Query 047875
Match_columns 92
No_of_seqs 112 out of 632
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:05:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 1.7E-41 3.7E-46 231.5 9.6 90 1-92 1-103 (104)
2 PLN03220 uncharacterized prote 100.0 5E-40 1.1E-44 224.6 9.7 91 1-91 1-102 (105)
3 PLN03219 uncharacterized prote 100.0 1.7E-37 3.7E-42 212.9 9.3 91 1-91 1-104 (108)
4 PF02519 Auxin_inducible: Auxi 100.0 4.5E-37 9.9E-42 207.5 8.1 90 1-92 1-99 (100)
5 PRK02899 adaptor protein; Prov 84.7 0.86 1.9E-05 33.8 2.5 24 54-78 39-62 (197)
6 smart00666 PB1 PB1 domain. Pho 81.1 5.8 0.00013 24.3 4.9 47 37-89 9-65 (81)
7 PRK02315 adaptor protein; Prov 79.5 1.6 3.5E-05 33.0 2.4 25 53-78 38-62 (233)
8 PF02214 BTB_2: BTB/POZ domain 77.6 1.5 3.3E-05 27.7 1.5 54 34-91 3-59 (94)
9 PF05389 MecA: Negative regula 73.5 1.1 2.4E-05 33.1 0.0 25 53-78 38-62 (220)
10 cd05992 PB1 The PB1 domain is 66.1 26 0.00057 21.0 6.4 51 35-90 6-66 (81)
11 PF02209 VHP: Villin headpiece 52.9 5.9 0.00013 22.3 0.5 19 50-68 1-19 (36)
12 smart00153 VHP Villin headpiec 52.1 7.5 0.00016 21.8 0.8 19 50-68 1-19 (36)
13 cd06410 PB1_UP2 Uncharacterize 51.2 44 0.00095 22.2 4.6 46 33-83 17-74 (97)
14 PF11834 DUF3354: Domain of un 50.2 14 0.0003 23.4 2.0 24 41-70 19-42 (69)
15 PF08861 DUF1828: Domain of un 47.7 41 0.00089 21.4 3.9 39 53-91 44-82 (90)
16 PRK14189 bifunctional 5,10-met 47.2 78 0.0017 24.9 6.1 54 26-92 30-85 (285)
17 PF12058 DUF3539: Protein of u 45.2 3.5 7.5E-05 27.7 -1.5 9 49-57 4-12 (88)
18 PRK14186 bifunctional 5,10-met 42.9 97 0.0021 24.6 6.1 54 26-92 30-85 (297)
19 PF00564 PB1: PB1 domain; Int 42.8 75 0.0016 19.1 4.5 48 35-88 7-65 (84)
20 cd06407 PB1_NLP A PB1 domain i 40.9 82 0.0018 20.2 4.5 44 36-84 7-61 (82)
21 PRK10308 3-methyl-adenine DNA 40.2 87 0.0019 24.3 5.3 62 29-91 45-120 (283)
22 PRK14193 bifunctional 5,10-met 39.5 1E+02 0.0022 24.4 5.6 54 26-92 30-85 (284)
23 PRK02797 4-alpha-L-fucosyltran 39.2 86 0.0019 25.5 5.3 45 26-70 141-206 (322)
24 cd06396 PB1_NBR1 The PB1 domai 37.1 1.2E+02 0.0026 19.8 5.0 43 40-84 10-60 (81)
25 PRK14188 bifunctional 5,10-met 36.0 1.7E+02 0.0036 23.1 6.4 54 26-92 30-85 (296)
26 PRK14179 bifunctional 5,10-met 34.3 1.8E+02 0.0038 23.0 6.3 53 27-92 31-85 (284)
27 PRK14170 bifunctional 5,10-met 33.9 1.6E+02 0.0036 23.2 6.0 53 26-91 29-83 (284)
28 cd01406 SIR2-like Sir2-like: P 33.0 54 0.0012 24.0 3.0 36 30-72 1-36 (242)
29 PF12062 HSNSD: heparan sulfat 32.3 36 0.00077 29.1 2.2 45 24-69 90-141 (487)
30 PF07429 Glyco_transf_56: 4-al 31.9 1.2E+02 0.0026 25.0 5.1 45 26-70 180-245 (360)
31 PRK14194 bifunctional 5,10-met 31.9 1.7E+02 0.0037 23.3 5.9 54 26-92 31-86 (301)
32 PRK14176 bifunctional 5,10-met 31.5 2.3E+02 0.0049 22.4 6.5 54 26-92 36-91 (287)
33 PRK14166 bifunctional 5,10-met 31.3 1.7E+02 0.0036 23.1 5.7 54 26-92 28-83 (282)
34 PF02100 ODC_AZ: Ornithine dec 30.8 33 0.00071 23.2 1.5 40 40-81 23-66 (108)
35 TIGR03793 TOMM_pelo TOMM prope 29.9 89 0.0019 20.0 3.3 21 52-72 15-39 (77)
36 PF14317 YcxB: YcxB-like prote 29.7 1E+02 0.0023 16.9 3.8 33 27-61 27-59 (62)
37 PRK14192 bifunctional 5,10-met 29.0 2E+02 0.0043 22.3 5.7 52 27-91 32-85 (283)
38 PRK14187 bifunctional 5,10-met 28.7 2.6E+02 0.0056 22.2 6.4 53 26-91 30-84 (294)
39 PRK14167 bifunctional 5,10-met 28.6 2.4E+02 0.0051 22.4 6.1 53 26-91 29-83 (297)
40 PRK14172 bifunctional 5,10-met 28.4 2.3E+02 0.0051 22.2 6.0 51 29-92 33-85 (278)
41 PRK14190 bifunctional 5,10-met 28.2 2E+02 0.0044 22.6 5.7 53 26-91 30-84 (284)
42 PF11876 DUF3396: Protein of u 27.5 51 0.0011 24.5 2.1 39 41-79 24-64 (208)
43 PRK13277 5-formaminoimidazole- 27.0 18 0.0004 29.6 -0.3 24 24-47 87-111 (366)
44 PF11470 TUG-UBL1: GLUT4 regul 26.9 84 0.0018 19.5 2.7 35 40-76 5-39 (65)
45 PRK14169 bifunctional 5,10-met 26.9 2.3E+02 0.005 22.3 5.8 53 26-91 28-82 (282)
46 PRK14182 bifunctional 5,10-met 26.8 2.3E+02 0.0049 22.4 5.7 53 26-91 28-82 (282)
47 PRK10792 bifunctional 5,10-met 26.7 2E+02 0.0044 22.7 5.4 53 27-92 32-86 (285)
48 PF05194 UreE_C: UreE urease a 26.6 1.1E+02 0.0023 19.4 3.3 28 29-63 24-51 (87)
49 cd06536 CIDE_N_ICAD CIDE_N dom 26.5 1.2E+02 0.0027 19.8 3.6 36 40-80 12-47 (80)
50 PRK14184 bifunctional 5,10-met 26.3 2.4E+02 0.0052 22.3 5.8 54 26-92 29-84 (286)
51 TIGR02529 EutJ ethanolamine ut 26.2 79 0.0017 23.5 3.0 42 41-83 32-73 (239)
52 COG4862 MecA Negative regulato 26.1 51 0.0011 25.5 2.0 27 52-79 37-63 (224)
53 COG1759 5-formaminoimidazole-4 25.9 30 0.00065 28.5 0.7 25 24-48 87-112 (361)
54 cd06398 PB1_Joka2 The PB1 doma 25.5 2E+02 0.0043 18.8 5.8 49 37-86 8-68 (91)
55 PF00651 BTB: BTB/POZ domain; 25.4 1.6E+02 0.0036 17.9 4.0 51 33-90 14-69 (111)
56 PF04341 DUF485: Protein of un 25.2 54 0.0012 21.2 1.7 12 51-62 2-13 (91)
57 KOG1748 Acyl carrier protein/N 25.0 35 0.00077 24.3 0.9 27 63-89 97-124 (131)
58 PF00763 THF_DHG_CYH: Tetrahyd 23.4 2E+02 0.0044 19.1 4.3 52 26-90 27-80 (117)
59 PRK14173 bifunctional 5,10-met 23.2 3.3E+02 0.0072 21.5 6.1 53 27-92 28-82 (287)
60 PRK14175 bifunctional 5,10-met 23.2 2.7E+02 0.0059 21.9 5.6 53 26-91 30-84 (286)
61 cd03397 PAP2_acid_phosphatase 23.1 54 0.0012 24.5 1.6 20 48-67 212-231 (232)
62 PF08948 DUF1859: Domain of un 22.8 29 0.00062 24.4 0.0 29 27-57 85-123 (126)
63 PRK14171 bifunctional 5,10-met 22.1 4E+02 0.0087 21.1 6.6 52 27-91 31-84 (288)
64 PLN02897 tetrahydrofolate dehy 22.1 2.8E+02 0.0061 22.6 5.6 52 27-91 85-138 (345)
65 PF11822 DUF3342: Domain of un 22.1 1E+02 0.0022 24.9 3.1 47 40-90 12-63 (317)
66 PF12518 DUF3721: Protein of u 22.0 60 0.0013 18.1 1.2 22 61-82 8-31 (34)
67 PRK14177 bifunctional 5,10-met 21.7 3.7E+02 0.0081 21.2 6.1 51 29-92 34-86 (284)
68 cd04751 Commd3 COMM_Domain con 21.6 64 0.0014 21.1 1.5 19 74-92 65-83 (95)
69 cd06080 MUM1_like Mutated mela 21.4 1.6E+02 0.0034 19.0 3.3 42 28-69 28-75 (80)
70 cd01615 CIDE_N CIDE_N domain, 20.7 1.6E+02 0.0034 19.2 3.2 34 40-80 12-45 (78)
71 cd06279 PBP1_LacI_like_3 Ligan 20.4 1E+02 0.0023 22.1 2.6 26 45-70 5-36 (283)
72 PRK00110 hypothetical protein; 20.0 4.1E+02 0.009 20.4 6.0 75 13-92 111-185 (245)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=231.54 Aligned_cols=90 Identities=53% Similarity=0.857 Sum_probs=82.4
Q ss_pred Cccccch----hHHHHHHHHhhhhhcc---------ccCCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhh
Q 047875 1 MAIRFPK----IVNAKQALRRAFMASE---------AATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEF 67 (92)
Q Consensus 1 m~~~~~~----~~~~k~~l~r~~s~~~---------~~~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEf 67 (92)
|||+..+ ++++||+||||.|.++ +.+||+||||||||+ +++||+||++|||||+|++||++|||||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf 79 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF 79 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence 7777553 6789999999998764 458999999999998 7899999999999999999999999999
Q ss_pred CCCCCCCceeeeCCHHHHHHhHhcC
Q 047875 68 GFDHPMGVLTIPCSEQVFFDLTCSL 92 (92)
Q Consensus 68 G~~~~~G~L~iPC~~~~F~~vl~~l 92 (92)
||+|+ |+|+|||+++.|++++|+|
T Consensus 80 Gf~~~-G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 80 GFDHD-MGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred CCCCC-CcEEEeCCHHHHHHHHHHh
Confidence 99998 8999999999999999986
No 2
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=5e-40 Score=224.57 Aligned_cols=91 Identities=62% Similarity=0.975 Sum_probs=81.6
Q ss_pred CccccchhHHH-HHHHHhhhhhcc-------ccCCCCceEEEEeccC---ceeEEEEeccCCCchHHHHHHHHHhhhhCC
Q 047875 1 MAIRFPKIVNA-KQALRRAFMASE-------AATVPKGHFAVYIGEF---EKKRFVVPISHLKHPSFQNLLSQAGEEFGF 69 (92)
Q Consensus 1 m~~~~~~~~~~-k~~l~r~~s~~~-------~~~vpkG~~aVyVG~~---e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~ 69 (92)
||++++.|.+. ||+++|++...+ +.+|||||||||||++ +++||+||++|||||.|++||++|||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf 80 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF 80 (105)
T ss_pred CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence 99999999966 999999883221 5689999999999972 589999999999999999999999999999
Q ss_pred CCCCCceeeeCCHHHHHHhHhc
Q 047875 70 DHPMGVLTIPCSEQVFFDLTCS 91 (92)
Q Consensus 70 ~~~~G~L~iPC~~~~F~~vl~~ 91 (92)
+|++|+|+|||+++.|++++++
T Consensus 81 ~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 81 NHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCEEeeCCHHHHHHHHHh
Confidence 9966999999999999999874
No 3
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=212.94 Aligned_cols=91 Identities=53% Similarity=0.862 Sum_probs=80.0
Q ss_pred CccccchhHHHHHHHHhhhhhcc------------ccCCCCceEEEEecc-CceeEEEEeccCCCchHHHHHHHHHhhhh
Q 047875 1 MAIRFPKIVNAKQALRRAFMASE------------AATVPKGHFAVYIGE-FEKKRFVVPISHLKHPSFQNLLSQAGEEF 67 (92)
Q Consensus 1 m~~~~~~~~~~k~~l~r~~s~~~------------~~~vpkG~~aVyVG~-~e~~RfvVpv~yL~hP~F~~LL~~aeeEf 67 (92)
||.....+.++||++|..+...| +.+|||||+|||||+ +|++||+||++|||||+|++||++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf 80 (108)
T PLN03219 1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC 80 (108)
T ss_pred CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence 78888888899999875443322 467999999999998 46999999999999999999999999999
Q ss_pred CCCCCCCceeeeCCHHHHHHhHhc
Q 047875 68 GFDHPMGVLTIPCSEQVFFDLTCS 91 (92)
Q Consensus 68 G~~~~~G~L~iPC~~~~F~~vl~~ 91 (92)
||+|++|+|+|||+++.|++++++
T Consensus 81 Gf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 81 GFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCCCCCCEEEeCCHHHHHHHHHh
Confidence 999866999999999999999974
No 4
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=4.5e-37 Score=207.48 Aligned_cols=90 Identities=56% Similarity=0.866 Sum_probs=76.3
Q ss_pred CccccchhHHHHHHHHhhhhhcc---------ccCCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCC
Q 047875 1 MAIRFPKIVNAKQALRRAFMASE---------AATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDH 71 (92)
Q Consensus 1 m~~~~~~~~~~k~~l~r~~s~~~---------~~~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~ 71 (92)
|.-++..+..+++...++.+..+ ..++|+||||||||+ +++||+||++|||||+|++||++|||||||++
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~ 79 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQ 79 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence 55666666655655554443211 368999999999998 89999999999999999999999999999999
Q ss_pred CCCceeeeCCHHHHHHhHhcC
Q 047875 72 PMGVLTIPCSEQVFFDLTCSL 92 (92)
Q Consensus 72 ~~G~L~iPC~~~~F~~vl~~l 92 (92)
+ |+|+|||+++.|++++|+|
T Consensus 80 ~-G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 80 D-GPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred C-CcEEeeCCHHHHHHHHHHh
Confidence 7 9999999999999999986
No 5
>PRK02899 adaptor protein; Provisional
Probab=84.73 E-value=0.86 Score=33.83 Aligned_cols=24 Identities=25% Similarity=0.717 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhhhhCCCCCCCceee
Q 047875 54 PSFQNLLSQAGEEFGFDHPMGVLTI 78 (92)
Q Consensus 54 P~F~~LL~~aeeEfG~~~~~G~L~i 78 (92)
-+|.++|++|..|+||..+ |||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~-~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEAD-GPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccC-CeEEE
Confidence 4677779999999999987 89876
No 6
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=81.12 E-value=5.8 Score=24.26 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=34.8
Q ss_pred ccCceeEEEEeccCCCchHHHHHHHHHhhhhCCC----------CCCCceeeeCCHHHHHHhH
Q 047875 37 GEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFD----------HPMGVLTIPCSEQVFFDLT 89 (92)
Q Consensus 37 G~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~----------~~~G~L~iPC~~~~F~~vl 89 (92)
|+ +.+||.+|- ...|.+|..+..+.|+.. .++..++|.++. ++...+
T Consensus 9 ~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~ 65 (81)
T smart00666 9 GG-ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAI 65 (81)
T ss_pred CC-EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHH
Confidence 65 789999986 778999999999999874 232367888875 444443
No 7
>PRK02315 adaptor protein; Provisional
Probab=79.47 E-value=1.6 Score=32.99 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.1
Q ss_pred chHHHHHHHHHhhhhCCCCCCCceee
Q 047875 53 HPSFQNLLSQAGEEFGFDHPMGVLTI 78 (92)
Q Consensus 53 hP~F~~LL~~aeeEfG~~~~~G~L~i 78 (92)
+-+|.++|++|..|+||..+ |||++
T Consensus 38 e~fF~~mm~Ea~~e~~F~~~-~pl~~ 62 (233)
T PRK02315 38 EEFFYSMMDEVDEEDDFADE-GPLWF 62 (233)
T ss_pred HHHHHHHHHHhccccCcccC-CeEEE
Confidence 35799999999999999986 99976
No 8
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=77.62 E-value=1.5 Score=27.67 Aligned_cols=54 Identities=20% Similarity=0.147 Sum_probs=38.4
Q ss_pred EEeccCceeEEEEeccCCC-ch--HHHHHHHHHhhhhCCCCCCCceeeeCCHHHHHHhHhc
Q 047875 34 VYIGEFEKKRFVVPISHLK-HP--SFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCS 91 (92)
Q Consensus 34 VyVG~~e~~RfvVpv~yL~-hP--~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~F~~vl~~ 91 (92)
.=|| .++|.++.+.|. +| .|..+++.......-+ +.|.+-|-++...|++|+.-
T Consensus 3 lNVG---G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~-~~~~~fiDRdp~~F~~IL~y 59 (94)
T PF02214_consen 3 LNVG---GTIFETSRSTLTRYPDSLLARLFSGERSDDYDD-DDGEYFIDRDPELFEYILNY 59 (94)
T ss_dssp EEET---TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEET-TTTEEEESS-HHHHHHHHHH
T ss_pred EEEC---CEEEEEcHHHHhhCCCChhhhHHhhccccccCC-ccceEEeccChhhhhHHHHH
Confidence 4467 489999998887 44 7888888652222222 23899999999999999863
No 9
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=73.45 E-value=1.1 Score=33.13 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhhhhCCCCCCCceee
Q 047875 53 HPSFQNLLSQAGEEFGFDHPMGVLTI 78 (92)
Q Consensus 53 hP~F~~LL~~aeeEfG~~~~~G~L~i 78 (92)
+-.|.++|++|.+|+||..+ |+|++
T Consensus 38 e~fF~~ileea~~e~~F~~~-~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFEND-GPLTF 62 (220)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhccccCcccC-CeEEE
Confidence 45799999999999999986 88875
No 10
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=66.07 E-value=26 Score=21.04 Aligned_cols=51 Identities=31% Similarity=0.443 Sum_probs=35.5
Q ss_pred EeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCC----------CCCCceeeeCCHHHHHHhHh
Q 047875 35 YIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFD----------HPMGVLTIPCSEQVFFDLTC 90 (92)
Q Consensus 35 yVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~----------~~~G~L~iPC~~~~F~~vl~ 90 (92)
+-+. +.+||.+|. .++.|.+|..+-++.|+.. .++-.++|.++ ++++..+.
T Consensus 6 ~~~~-~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~ 66 (81)
T cd05992 6 KYGG-EIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIE 66 (81)
T ss_pred EecC-CCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHH
Confidence 3343 689999998 8889999999999988885 12124666665 45555543
No 11
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=52.89 E-value=5.9 Score=22.27 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.3
Q ss_pred CCCchHHHHHHHHHhhhhC
Q 047875 50 HLKHPSFQNLLSQAGEEFG 68 (92)
Q Consensus 50 yL~hP~F~~LL~~aeeEfG 68 (92)
||+.-.|+++..++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 12
>smart00153 VHP Villin headpiece domain.
Probab=52.06 E-value=7.5 Score=21.75 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.1
Q ss_pred CCCchHHHHHHHHHhhhhC
Q 047875 50 HLKHPSFQNLLSQAGEEFG 68 (92)
Q Consensus 50 yL~hP~F~~LL~~aeeEfG 68 (92)
||+.-.|+..+.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 13
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=51.17 E-value=44 Score=22.23 Aligned_cols=46 Identities=28% Similarity=0.403 Sum_probs=33.2
Q ss_pred EEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCC------------CCceeeeCCHH
Q 047875 33 AVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHP------------MGVLTIPCSEQ 83 (92)
Q Consensus 33 aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~------------~G~L~iPC~~~ 83 (92)
.=|||. +.+-..|+-+ -.|.+|..+..+.++..+. ++-+.|.||.+
T Consensus 17 l~Y~GG-~tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeD 74 (97)
T cd06410 17 LRYVGG-ETRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDED 74 (97)
T ss_pred EEEcCC-ceEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHH
Confidence 469996 7888888877 3677788888888877651 14667788864
No 14
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=50.21 E-value=14 Score=23.39 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=19.3
Q ss_pred eeEEEEeccCCCchHHHHHHHHHhhhhCCC
Q 047875 41 KKRFVVPISHLKHPSFQNLLSQAGEEFGFD 70 (92)
Q Consensus 41 ~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~ 70 (92)
.+=..+| -.+++||+.|++.||+.
T Consensus 19 GKvi~lP------~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 19 GKVIWLP------DSLEELLKIASEKFGFS 42 (69)
T ss_pred CEEEEcC------ccHHHHHHHHHHHhCCC
Confidence 4555666 36899999999999996
No 15
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=47.67 E-value=41 Score=21.42 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=33.5
Q ss_pred chHHHHHHHHHhhhhCCCCCCCceeeeCCHHHHHHhHhc
Q 047875 53 HPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCS 91 (92)
Q Consensus 53 hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~F~~vl~~ 91 (92)
.|.=+++|+..-..||+.-++|.|.+.++.+.|-....+
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~ 82 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHR 82 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHH
Confidence 677789999999999999888999999999988766543
No 16
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.19 E-value=78 Score=24.94 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=39.6
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
..+.+...+.||+ +. ..-....--.++.+|.|+..+ .+.+| ++.+.|+..+..|
T Consensus 30 g~~p~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~l 85 (285)
T PRK14189 30 GHQPGLAVILVGD-NP----------ASQVYVRNKVKACEDNGFHSL--KDRYPADLSEAELLARIDEL 85 (285)
T ss_pred CCCCeEEEEEeCC-Cc----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 3455899999997 32 334556777888999999875 57788 7788888877653
No 17
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=45.25 E-value=3.5 Score=27.73 Aligned_cols=9 Identities=44% Similarity=0.932 Sum_probs=6.8
Q ss_pred cCCCchHHH
Q 047875 49 SHLKHPSFQ 57 (92)
Q Consensus 49 ~yL~hP~F~ 57 (92)
.|||||.|-
T Consensus 4 ~YLNHPtFG 12 (88)
T PF12058_consen 4 TYLNHPTFG 12 (88)
T ss_dssp -EEEETTTE
T ss_pred ccccCCccc
Confidence 589999884
No 18
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.91 E-value=97 Score=24.59 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=38.0
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
..+.+...+.||+ +. ..-....--.+++||+|++.+ .+.+| ++.+.+.+.+..|
T Consensus 30 g~~p~LaiI~vgd-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~l 85 (297)
T PRK14186 30 GRPPGLAVLRVGD-DP----------ASAVYVRNKEKACARVGIASF--GKHLPADTSQAEVEALIAQL 85 (297)
T ss_pred CCCceEEEEEeCC-Ch----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 3455899999997 22 233456677788899999875 46665 7788888877643
No 19
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=42.77 E-value=75 Score=19.12 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=30.9
Q ss_pred EeccCceeE-EEEeccCCCchHHHHHHHHHhhhhCCC----------CCCCceeeeCCHHHHHHh
Q 047875 35 YIGEFEKKR-FVVPISHLKHPSFQNLLSQAGEEFGFD----------HPMGVLTIPCSEQVFFDL 88 (92)
Q Consensus 35 yVG~~e~~R-fvVpv~yL~hP~F~~LL~~aeeEfG~~----------~~~G~L~iPC~~~~F~~v 88 (92)
+-++ +.+| +.+| +.+.|.+|..+.++.||.. .++-.++|.++. ++...
T Consensus 7 ~~~~-~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~-Dl~~a 65 (84)
T PF00564_consen 7 RYGG-DIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDE-DLQEA 65 (84)
T ss_dssp EETT-EEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHH-HHHHH
T ss_pred EECC-eeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHH-HHHHH
Confidence 3343 4555 4444 5679999999999999984 332257777775 44433
No 20
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=40.89 E-value=82 Score=20.17 Aligned_cols=44 Identities=30% Similarity=0.535 Sum_probs=32.0
Q ss_pred eccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCC-----------CCCceeeeCCHHH
Q 047875 36 IGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDH-----------PMGVLTIPCSEQV 84 (92)
Q Consensus 36 VG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~-----------~~G~L~iPC~~~~ 84 (92)
.|+ +..||-+|.+. -|++|.++-.+-|+.+. ++..++|.|+.+.
T Consensus 7 ~~~-d~~r~~l~~~~----~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL 61 (82)
T cd06407 7 YGE-EKIRFRLPPSW----GFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADL 61 (82)
T ss_pred eCC-eEEEEEcCCCC----CHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHH
Confidence 354 78999988754 68888888888887753 3246778888754
No 21
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=40.15 E-value=87 Score=24.29 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=41.7
Q ss_pred CceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCC--------------CCceeeeCCHHHHHHhHhc
Q 047875 29 KGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHP--------------MGVLTIPCSEQVFFDLTCS 91 (92)
Q Consensus 29 kG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~--------------~G~L~iPC~~~~F~~vl~~ 91 (92)
.|++.|.-.+ .+.++.|-++.-.-|....++.....-||.+.| .-+|++|...+.||-+++.
T Consensus 45 ~~~~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~a 120 (283)
T PRK10308 45 RGVVTVIPDI-ARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRA 120 (283)
T ss_pred cEEEEEEEcC-CCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHH
Confidence 4555555444 445666666654445666788888877777765 2358999999999988764
No 22
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.47 E-value=1e+02 Score=24.36 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=38.8
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
..+.+...++||+ +. ..-.....-.+++||.|++.+ .+.+| ++.+.|...+..|
T Consensus 30 g~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~el~~~I~~l 85 (284)
T PRK14193 30 GITPGLGTVLVGD-DP----------GSQAYVRGKHRDCAEVGITSI--RRDLPADATQEELNAVIDEL 85 (284)
T ss_pred CCCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 3455888999997 21 223456677888999999865 57777 7888888877643
No 23
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=39.24 E-value=86 Score=25.47 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=33.5
Q ss_pred CCCCceEEEEecc-------------------CceeEEEEeccC--CCchHHHHHHHHHhhhhCCC
Q 047875 26 TVPKGHFAVYIGE-------------------FEKKRFVVPISH--LKHPSFQNLLSQAGEEFGFD 70 (92)
Q Consensus 26 ~vpkG~~aVyVG~-------------------~e~~RfvVpv~y--L~hP~F~~LL~~aeeEfG~~ 70 (92)
..+++-+.+.||. ++.-|+.||.+| =|.--.++..+.+.+-||-+
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~ 206 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE 206 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc
Confidence 4577889999995 134599999999 56666777777777778843
No 24
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=37.06 E-value=1.2e+02 Score=19.80 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=32.6
Q ss_pred ceeEEEEeccCCCchHHHHHHHHHhhhhCCC--------CCCCceeeeCCHHH
Q 047875 40 EKKRFVVPISHLKHPSFQNLLSQAGEEFGFD--------HPMGVLTIPCSEQV 84 (92)
Q Consensus 40 e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~--------~~~G~L~iPC~~~~ 84 (92)
+..||.++-+ .++.|.+|..+-+.-|+++ .++-+++|.|+.+.
T Consensus 10 d~~rf~~~~~--~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eL 60 (81)
T cd06396 10 ESQSFLVSDS--ENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEY 60 (81)
T ss_pred eEEEEEecCC--CCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhH
Confidence 6899998762 2557999999998888853 44457899999754
No 25
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.97 E-value=1.7e+02 Score=23.14 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=38.0
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
..+.+...+.||+ +. ..-....--.+++||.|++.+ .+.+| ++.+.+...+..|
T Consensus 30 g~~p~La~i~vg~-~~----------~s~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~i~~l 85 (296)
T PRK14188 30 GVTPGLAVVLVGE-DP----------ASQVYVRSKGKQTKEAGMASF--EHKLPADTSQAELLALIARL 85 (296)
T ss_pred CCCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 3456899999997 21 223455667788899999865 46666 7888888877653
No 26
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.28 E-value=1.8e+02 Score=22.96 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=37.8
Q ss_pred CCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 27 VPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 27 vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
.+.+...+.||+ +. ..-....--.++.|+.|+..+ .+.+| ++.+.|...+..|
T Consensus 31 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~l 85 (284)
T PRK14179 31 IVPGLVVILVGD-NP----------ASQVYVRNKERSALAAGFKSE--VVRLPETISQEELLDLIERY 85 (284)
T ss_pred CCceEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 345889999997 21 223455667788999999875 57888 7788888777643
No 27
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.86 E-value=1.6e+02 Score=23.19 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=36.5
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhc
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCS 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~ 91 (92)
..+.+...+.||+ +. ..-....--.++++|+|++.+ .+.+| ++.+.+...+..
T Consensus 29 g~~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~ 83 (284)
T PRK14170 29 GKKPGLAVVLVGD-NQ----------ASRTYVRNKQKRTEEAGMKSV--LIELPENVTEEKLLSVVEE 83 (284)
T ss_pred CCCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 4556899999997 21 233456667788889998865 56777 666677776654
No 28
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=32.96 E-value=54 Score=23.97 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=28.6
Q ss_pred ceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCC
Q 047875 30 GHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHP 72 (92)
Q Consensus 30 G~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~ 72 (92)
|.++++||.|-... .+-|...+|++...+|+|.+.+
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccc
Confidence 78899999852232 5789999999999999987654
No 29
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=32.27 E-value=36 Score=29.15 Aligned_cols=45 Identities=27% Similarity=0.418 Sum_probs=37.6
Q ss_pred ccCCC-CceEEEEeccCceeEEEEec-----cCCCchH-HHHHHHHHhhhhCC
Q 047875 24 AATVP-KGHFAVYIGEFEKKRFVVPI-----SHLKHPS-FQNLLSQAGEEFGF 69 (92)
Q Consensus 24 ~~~vp-kG~~aVyVG~~e~~RfvVpv-----~yL~hP~-F~~LL~~aeeEfG~ 69 (92)
..-+| ||.+|+++-. ++.||.|=+ .|+|-|. -++||++=..|||-
T Consensus 90 ~ei~~~kg~lP~LT~~-~kGRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~V 141 (487)
T PF12062_consen 90 VEIASGKGDLPVLTDN-DKGRYSLIIFENLLKYLNLDSWNRELLDKYCREYGV 141 (487)
T ss_pred EEEccCCCCCCccccC-CCCcEEEEEehhHHHHcCChHHHHHHHHHHhHccCc
Confidence 34455 6899999976 688998876 8999998 89999999999974
No 30
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=31.91 E-value=1.2e+02 Score=25.04 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=35.0
Q ss_pred CCCCceEEEEecc-------------------CceeEEEEeccCC--CchHHHHHHHHHhhhhCCC
Q 047875 26 TVPKGHFAVYIGE-------------------FEKKRFVVPISHL--KHPSFQNLLSQAGEEFGFD 70 (92)
Q Consensus 26 ~vpkG~~aVyVG~-------------------~e~~RfvVpv~yL--~hP~F~~LL~~aeeEfG~~ 70 (92)
..+++-+.+.||. ++..|++||.+|= |.--.+++.+.+++-||-+
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~ 245 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAE 245 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCcc
Confidence 4557889999985 2468999999996 4567888888888888843
No 31
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.88 E-value=1.7e+02 Score=23.25 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=38.1
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
..+.+...+.||+ +. ..-.....-.++.||.|...+ .+.+| ++.+.+...+..|
T Consensus 31 g~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~l 86 (301)
T PRK14194 31 GIEPALAVILVGN-DP----------ASQVYVRNKILRAEEAGIRSL--EHRLPADTSQARLLALIAEL 86 (301)
T ss_pred CCCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 3456899999997 21 223455677788999999875 57777 7777888777543
No 32
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.53 E-value=2.3e+02 Score=22.45 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=38.2
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
..+.+...|.||+ +. ..-....--.++.||.|+..+ .+.+| ++.+.+...+..|
T Consensus 36 g~~P~Laii~vg~-d~----------aS~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~L 91 (287)
T PRK14176 36 GITPGLATILVGD-DP----------ASKMYVRLKHKACERVGIRAE--DQFLPADTTQEELLELIDSL 91 (287)
T ss_pred CCCCeEEEEEECC-Cc----------chHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 3455899999997 22 234556777888999999865 57777 6677787776543
No 33
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.34 E-value=1.7e+02 Score=23.13 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=37.9
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
.+..+...+.||+ +. ..-....--.++++++|++.+ .+.+| ++.+.|...+..|
T Consensus 28 g~~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~l 83 (282)
T PRK14166 28 GIESCLAVILVGD-NP----------ASQTYVKSKAKACEECGIKSL--VYHLNENTTQNELLALINTL 83 (282)
T ss_pred CCCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 3455889999997 21 223455667788899999865 57777 7788888776543
No 34
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=30.83 E-value=33 Score=23.17 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=20.9
Q ss_pred ceeEEE-EeccC---CCchHHHHHHHHHhhhhCCCCCCCceeeeCC
Q 047875 40 EKKRFV-VPISH---LKHPSFQNLLSQAGEEFGFDHPMGVLTIPCS 81 (92)
Q Consensus 40 e~~Rfv-Vpv~y---L~hP~F~~LL~~aeeEfG~~~~~G~L~iPC~ 81 (92)
++.=|+ +|-.. -+-..|.+||+.|||.+|.++ =.+.++=+
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~ 66 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKN 66 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECC
Confidence 456666 45444 345789999999999999875 25555533
No 35
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=29.87 E-value=89 Score=20.03 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=15.9
Q ss_pred CchHHHHHH----HHHhhhhCCCCC
Q 047875 52 KHPSFQNLL----SQAGEEFGFDHP 72 (92)
Q Consensus 52 ~hP~F~~LL----~~aeeEfG~~~~ 72 (92)
..|.|++.| +.+=+||||+-+
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P 39 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVP 39 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCC
Confidence 578999966 445578899877
No 36
>PF14317 YcxB: YcxB-like protein
Probab=29.66 E-value=1e+02 Score=16.90 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=24.6
Q ss_pred CCCceEEEEeccCceeEEEEeccCCCchHHHHHHH
Q 047875 27 VPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLS 61 (92)
Q Consensus 27 vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~ 61 (92)
.-+.++-+|++. ..-++||-+.++.-...++.+
T Consensus 27 e~~~~~~l~~~~--~~~~~iPk~~f~~~e~~~f~~ 59 (62)
T PF14317_consen 27 ETKDYFYLYLGK--NQAFIIPKRAFSEEEKEEFRE 59 (62)
T ss_pred EeCCEEEEEECC--CeEEEEEHHHCCHhHHHHHHH
Confidence 346778889985 699999999998655555544
No 37
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.99 E-value=2e+02 Score=22.33 Aligned_cols=52 Identities=8% Similarity=0.176 Sum_probs=35.4
Q ss_pred CCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceee--eCCHHHHHHhHhc
Q 047875 27 VPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTI--PCSEQVFFDLTCS 91 (92)
Q Consensus 27 vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~i--PC~~~~F~~vl~~ 91 (92)
.+.+...|.||+ +. ..-.....-.++.++.|.+.. -+.+ .|+.+.|+..+..
T Consensus 32 ~~p~L~~i~vg~-~~----------~s~~Y~~~~~~~~~~~Gi~~~--~~~l~~~~~~~~l~~~i~~ 85 (283)
T PRK14192 32 RTPILATILVGD-DP----------ASATYVRMKGNACRRVGMDSL--KVELPQETTTEQLLAKIEE 85 (283)
T ss_pred CCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHH
Confidence 455899999997 21 233456677778888888754 4566 4777777777654
No 38
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.68 E-value=2.6e+02 Score=22.23 Aligned_cols=53 Identities=11% Similarity=0.246 Sum_probs=36.0
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhc
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCS 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~ 91 (92)
..+.+...|.||+ +. ..-.....-.+++++.|+..+ -+.+| ++.+.|...+..
T Consensus 30 g~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~e~~l~~~I~~ 84 (294)
T PRK14187 30 NLFPCLIVILVGD-DP----------ASQLYVRNKQRKAEMLGLRSE--TILLPSTISESSLIEKINE 84 (294)
T ss_pred CCCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 3455899999997 21 233455667788889998865 56676 566677766654
No 39
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.57 E-value=2.4e+02 Score=22.43 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=36.9
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhc
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCS 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~ 91 (92)
..+.+...|.||+ +. ..-....--.++.++.|++.+ .+.+| ++.+.++..+..
T Consensus 29 g~~P~LaiI~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~ 83 (297)
T PRK14167 29 GVTPGLATVLMSD-DP----------ASETYVSMKQRDCEEVGIEAI--DVEIDPDAPAEELYDTIDE 83 (297)
T ss_pred CCCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 3455888999997 22 233455667788899998865 56777 667777777654
No 40
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.38 E-value=2.3e+02 Score=22.23 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=35.8
Q ss_pred CceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 29 KGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 29 kG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
.+...|.||+ +. ..-.....-.+++||.|...+ .+.+| |+.+.+...+..|
T Consensus 33 P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~l 85 (278)
T PRK14172 33 PKIASILVGN-DG----------GSIYYMNNQEKVANSLGIDFK--KIKLDESISEEDLINEIEEL 85 (278)
T ss_pred ceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 4788899997 21 122344566788899999865 57787 8788888776543
No 41
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.19 E-value=2e+02 Score=22.62 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=36.8
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhc
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCS 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~ 91 (92)
..+.+...|.||+ +. ..-....--.++.++.|++.+ .+.+| ++.+.|+..+..
T Consensus 30 g~~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~ 84 (284)
T PRK14190 30 GIVPGLAVILVGD-DP----------ASHSYVRGKKKAAEKVGIYSE--LYEFPADITEEELLALIDR 84 (284)
T ss_pred CCCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 3455888999997 21 233445677788899998865 57777 667777777654
No 42
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=27.46 E-value=51 Score=24.54 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=29.7
Q ss_pred eeEEEEeccCCCc-h-HHHHHHHHHhhhhCCCCCCCceeee
Q 047875 41 KKRFVVPISHLKH-P-SFQNLLSQAGEEFGFDHPMGVLTIP 79 (92)
Q Consensus 41 ~~RfvVpv~yL~h-P-~F~~LL~~aeeEfG~~~~~G~L~iP 79 (92)
-=+|.+|++||.. | .|++|+...++++.+.|--+++.+-
T Consensus 24 ~l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~~ 64 (208)
T PF11876_consen 24 YLSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAFN 64 (208)
T ss_pred EEEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEEe
Confidence 4589999999987 2 5999999999987777643455543
No 43
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=27.03 E-value=18 Score=29.61 Aligned_cols=24 Identities=46% Similarity=0.679 Sum_probs=18.8
Q ss_pred ccCCCCceEEEEeccCcee-EEEEe
Q 047875 24 AATVPKGHFAVYIGEFEKK-RFVVP 47 (92)
Q Consensus 24 ~~~vpkG~~aVyVG~~e~~-RfvVp 47 (92)
.--+|.|-|++|||-+.-+ .|.||
T Consensus 87 ~i~iPh~sf~~y~g~~~ie~~~~vp 111 (366)
T PRK13277 87 AIFVPNRSFAVYVGYDAIENEFKVP 111 (366)
T ss_pred eEEecCCCeEEEecHHHHhhcCCCC
Confidence 5579999999999973323 68888
No 44
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=26.95 E-value=84 Score=19.48 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=20.4
Q ss_pred ceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCce
Q 047875 40 EKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVL 76 (92)
Q Consensus 40 e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L 76 (92)
..+|+.|++.= .-.+.++|++|-+.||++.+.+.|
T Consensus 5 ~~rr~~vkvtp--~~~l~~VL~eac~k~~l~~~~~~L 39 (65)
T PF11470_consen 5 NFRRFKVKVTP--NTTLNQVLEEACKKFGLDPSSYDL 39 (65)
T ss_dssp TS-EEEE---T--TSBHHHHHHHHHHHTT--GGG-EE
T ss_pred CCcEEEEEECC--CCCHHHHHHHHHHHcCCCccceEE
Confidence 35777777753 336788999999999998654444
No 45
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.89 E-value=2.3e+02 Score=22.30 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=36.2
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhc
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCS 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~ 91 (92)
..+.+...+.||++ . ..-....--.++++++|+..+ -+.+| ++.+.|...+..
T Consensus 28 g~~P~Laii~vg~d-~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~ 82 (282)
T PRK14169 28 DVTPTLAVVLVGSD-P----------ASEVYVRNKQRRAEDIGVRSL--MFRLPEATTQADLLAKVAE 82 (282)
T ss_pred CCCCeEEEEEeCCC-h----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 34458899999972 1 123345666778889998865 56776 777778777654
No 46
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.77 E-value=2.3e+02 Score=22.40 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=37.2
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhc
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCS 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~ 91 (92)
.++.+...|.||+ +. ..-....--.++.++.|++.+ .+.+| ++.+.++..+..
T Consensus 28 g~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~ 82 (282)
T PRK14182 28 GVQTGLTVVRVGD-DP----------ASAIYVRGKRKDCEEVGITSV--EHHLPATTTQAELLALIAR 82 (282)
T ss_pred CCCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 4566899999997 21 223445667788899998865 57777 777778777654
No 47
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.74 E-value=2e+02 Score=22.67 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=37.7
Q ss_pred CCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 27 VPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 27 vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
...+...|.||+ +. ..-....--.++.+|.|++.. .+.+| ++.+.|...+..|
T Consensus 32 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~s~~el~~~I~~l 86 (285)
T PRK10792 32 RAPGLAVVLVGS-DP----------ASQVYVASKRKACEEVGFVSR--SYDLPETTSEAELLALIDEL 86 (285)
T ss_pred CCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 445888899997 22 223456667788899999865 57777 7888888877653
No 48
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=26.63 E-value=1.1e+02 Score=19.41 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=18.4
Q ss_pred CceEEEEeccCceeEEEEeccCCCchHHHHHHHHH
Q 047875 29 KGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQA 63 (92)
Q Consensus 29 kG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~a 63 (92)
.-|+|+++++ + +..|| ..+.++++|++-
T Consensus 24 NrH~p~~i~~-~--~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 24 NRHWPLFIEE-D--ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp HTT--EEEET-T--EEEEE------HHHHHHHHHT
T ss_pred CCccceEEcC-C--EEEec----CcHHHHHHHHHC
Confidence 3588999997 3 88888 677778888873
No 49
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=26.47 E-value=1.2e+02 Score=19.80 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=25.2
Q ss_pred ceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeeeC
Q 047875 40 EKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPC 80 (92)
Q Consensus 40 e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iPC 80 (92)
..+||=|=.+- +++|+.++.+-|....++++++|=+
T Consensus 12 r~~k~GV~A~s-----L~eL~~K~~~~l~l~~~~~~~~lvL 47 (80)
T cd06536 12 RQKQHGVAASS-----LEELRIKACESLGFDSSSAPITLVL 47 (80)
T ss_pred CCeeEeEEcCC-----HHHHHHHHHHHhCCCCCCCceEEEE
Confidence 45667666654 5899999999999985423455544
No 50
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.31 E-value=2.4e+02 Score=22.27 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=38.2
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
..+.+...|.||+ +. ..-....--.++.++.|+..+ .+.+| ++.+.|...+..|
T Consensus 29 g~~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~l 84 (286)
T PRK14184 29 GRAPGLAVILVGE-DP----------ASQVYVRNKERACEDAGIVSE--AFRLPADTTQEELEDLIAEL 84 (286)
T ss_pred CCCCEEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 3455899999997 21 123445666778899999875 57777 7888888877653
No 51
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=26.21 E-value=79 Score=23.50 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=29.1
Q ss_pred eeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeeeCCHH
Q 047875 41 KKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQ 83 (92)
Q Consensus 41 ~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~ 83 (92)
..+-++.++-.. -.++.|.++|++-.|...++-.+++|++..
T Consensus 32 ~~g~I~d~~~~~-~~l~~l~~~a~~~~g~~~~~vvisVP~~~~ 73 (239)
T TIGR02529 32 RDGIVVDFLGAV-EIVRRLKDTLEQKLGIELTHAATAIPPGTI 73 (239)
T ss_pred cCCeEEEhHHHH-HHHHHHHHHHHHHhCCCcCcEEEEECCCCC
Confidence 345555554433 367888999988889876645799998653
No 52
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=26.09 E-value=51 Score=25.55 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.7
Q ss_pred CchHHHHHHHHHhhhhCCCCCCCceeee
Q 047875 52 KHPSFQNLLSQAGEEFGFDHPMGVLTIP 79 (92)
Q Consensus 52 ~hP~F~~LL~~aeeEfG~~~~~G~L~iP 79 (92)
.|-.|-++++.+.+|-+|... |+|.|-
T Consensus 37 ~EE~F~~mMdEl~~ee~F~~~-GpL~iq 63 (224)
T COG4862 37 TEELFYEMMDELNLEEDFKDE-GPLWIQ 63 (224)
T ss_pred HHHHHHHHHHhcCCccccccC-CceEEE
Confidence 467899999999999999987 999874
No 53
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=25.87 E-value=30 Score=28.51 Aligned_cols=25 Identities=36% Similarity=0.705 Sum_probs=18.7
Q ss_pred ccCCCCceEEEEeccC-ceeEEEEec
Q 047875 24 AATVPKGHFAVYIGEF-EKKRFVVPI 48 (92)
Q Consensus 24 ~~~vpkG~~aVyVG~~-e~~RfvVpv 48 (92)
.--+|.|.|++|||-+ --..|.||+
T Consensus 87 ~I~IP~gSfv~Y~G~d~ie~~~~vP~ 112 (361)
T COG1759 87 AIFIPHGSFVAYVGYDGIENEFEVPM 112 (361)
T ss_pred eEEecCCceEEEecchhhhhcccCcc
Confidence 5579999999999962 135577775
No 54
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=25.50 E-value=2e+02 Score=18.77 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=33.7
Q ss_pred ccCceeEEEEeccC-CCchHHHHHHHHHhhhhCCCC-----------CCCceeeeCCHHHHH
Q 047875 37 GEFEKKRFVVPISH-LKHPSFQNLLSQAGEEFGFDH-----------PMGVLTIPCSEQVFF 86 (92)
Q Consensus 37 G~~e~~RfvVpv~y-L~hP~F~~LL~~aeeEfG~~~-----------~~G~L~iPC~~~~F~ 86 (92)
|+ +.+||-+|.+= -.+..|..|.++-++-|.... ++.-++|.|+.+.-+
T Consensus 8 ~~-~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~ 68 (91)
T cd06398 8 GG-TLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTD 68 (91)
T ss_pred CC-EEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHH
Confidence 54 79999999740 114578888888888777653 223588889876544
No 55
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=25.39 E-value=1.6e+02 Score=17.91 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=33.4
Q ss_pred EEEeccCceeEEEEeccCC--CchHHHHHHHHHhhhhCCCCCCC--ceeee-CCHHHHHHhHh
Q 047875 33 AVYIGEFEKKRFVVPISHL--KHPSFQNLLSQAGEEFGFDHPMG--VLTIP-CSEQVFFDLTC 90 (92)
Q Consensus 33 aVyVG~~e~~RfvVpv~yL--~hP~F~~LL~~aeeEfG~~~~~G--~L~iP-C~~~~F~~vl~ 90 (92)
.+.||+ .++|-+.-..| ..|.|+.+++.. +...+ + .+.++ |+.+.|+.+++
T Consensus 14 ~i~v~d--~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~~l~ 69 (111)
T PF00651_consen 14 TIRVGD--GKTFYVHKNILAARSPYFRNLFEGS----KFKES-TVPEISLPDVSPEAFEAFLE 69 (111)
T ss_dssp EEEETT--TEEEEE-HHHHHHHBHHHHHHHTTT----TSTTS-SEEEEEETTSCHHHHHHHHH
T ss_pred EEEECC--CEEEeechhhhhccchhhhhccccc----ccccc-cccccccccccccccccccc
Confidence 455552 58888888777 468999999887 22222 3 35544 77888888775
No 56
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=25.22 E-value=54 Score=21.17 Aligned_cols=12 Identities=42% Similarity=0.888 Sum_probs=10.5
Q ss_pred CCchHHHHHHHH
Q 047875 51 LKHPSFQNLLSQ 62 (92)
Q Consensus 51 L~hP~F~~LL~~ 62 (92)
++||.|++|.++
T Consensus 2 ~~~p~f~~L~r~ 13 (91)
T PF04341_consen 2 LRSPEFQELVRR 13 (91)
T ss_pred CCCHHHHHHHHH
Confidence 689999999876
No 57
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.05 E-value=35 Score=24.35 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=16.9
Q ss_pred HhhhhCCCCCCC-ceeeeCCHHHHHHhH
Q 047875 63 AGEEFGFDHPMG-VLTIPCSEQVFFDLT 89 (92)
Q Consensus 63 aeeEfG~~~~~G-~L~iPC~~~~F~~vl 89 (92)
-||||||..+++ +=.|-|-.+.++.+.
T Consensus 97 lEEEFgiEIpd~dAdki~t~~da~~yI~ 124 (131)
T KOG1748|consen 97 LEEEFGIEIPDEDADKIKTVRDAADYIA 124 (131)
T ss_pred hHHHhCCccCcchhhhhCCHHHHHHHHH
Confidence 489999987643 344555555555543
No 58
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=23.42 E-value=2e+02 Score=19.13 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=31.1
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHh
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTC 90 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~ 90 (92)
.++.+...|+||+ +. ..-.......++.+++|..-. ...+| ++.+.|...+.
T Consensus 27 ~~~P~Laii~vg~-d~----------~S~~Y~~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~i~ 80 (117)
T PF00763_consen 27 GITPKLAIILVGD-DP----------ASISYVRSKQKAAEKLGIEFE--LIELPEDISEEELLELIE 80 (117)
T ss_dssp T---EEEEEEES---H----------HHHHHHHHHHHHHHHHT-EEE--EEEE-TTSSHHHHHHHHH
T ss_pred CCCcEEEEEecCC-Ch----------hHHHHHHHHHHHHHHcCCceE--EEECCCCcCHHHHHHHHH
Confidence 6788999999997 21 223466777888899998765 46665 45566666554
No 59
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.23 E-value=3.3e+02 Score=21.50 Aligned_cols=53 Identities=21% Similarity=0.351 Sum_probs=37.4
Q ss_pred CCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 27 VPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 27 vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
...+...+.||+ +. ..-....--.++.||+|++.+ .+.+| ++.+.|...+..|
T Consensus 28 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~l 82 (287)
T PRK14173 28 FVPHLRVVRLGE-DP----------ASVSYVRLKDRQAKALGLRSQ--VEVLPESTSQEELLELIARL 82 (287)
T ss_pred CCCcEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 345899999997 21 122445667788899999875 57887 7788888777643
No 60
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.19 E-value=2.7e+02 Score=21.89 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=36.1
Q ss_pred CCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhc
Q 047875 26 TVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCS 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~ 91 (92)
.++.+...+.||+ +. ..-....--.++++|.|++.+ .+.+| ++.+.+...+..
T Consensus 30 g~~p~Laii~vg~-~~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~ 84 (286)
T PRK14175 30 GFTPKLSVILVGN-DG----------ASQSYVRSKKKAAEKIGMISE--IVHLEETATEEEVLNELNR 84 (286)
T ss_pred CCCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 3455888999997 21 223445667788889998865 57777 666777776654
No 61
>cd03397 PAP2_acid_phosphatase PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.
Probab=23.11 E-value=54 Score=24.53 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.7
Q ss_pred ccCCCchHHHHHHHHHhhhh
Q 047875 48 ISHLKHPSFQNLLSQAGEEF 67 (92)
Q Consensus 48 v~yL~hP~F~~LL~~aeeEf 67 (92)
...+++|.|++.+++|..|+
T Consensus 212 a~l~~~~~f~~~~~~A~~El 231 (232)
T cd03397 212 AALLADPAFAADLAAARAEL 231 (232)
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 45678899999999999885
No 62
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=22.84 E-value=29 Score=24.43 Aligned_cols=29 Identities=28% Similarity=0.474 Sum_probs=7.8
Q ss_pred CCCceEEEEeccCceeEEE----------EeccCCCchHHH
Q 047875 27 VPKGHFAVYIGEFEKKRFV----------VPISHLKHPSFQ 57 (92)
Q Consensus 27 vpkG~~aVyVG~~e~~Rfv----------Vpv~yL~hP~F~ 57 (92)
-.+||+|+.|-. +.+|+ ||+-+||.|.-|
T Consensus 85 G~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 85 GKQGYFPLLVPG--RAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp ---SS--EEE----SSSSEEEEEEEESS----S--------
T ss_pred CCcccceeeccc--hhhhhhhhccCCCcceeeEEEeceeee
Confidence 458999999953 34444 688888888644
No 63
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.11 E-value=4e+02 Score=21.06 Aligned_cols=52 Identities=8% Similarity=0.126 Sum_probs=36.1
Q ss_pred CCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhc
Q 047875 27 VPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCS 91 (92)
Q Consensus 27 vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~ 91 (92)
...+...|.||+ +. ..-....--.++.++.|+..+ .+.+| ++.+.+...+..
T Consensus 31 ~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~ 84 (288)
T PRK14171 31 ASPKLAIVLVGD-NP----------ASIIYVKNKIKNAHKIGIDTL--LVNLSTTIHTNDLISKINE 84 (288)
T ss_pred CCCeEEEEEeCC-Cc----------cHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 344789999997 31 123445566778889999865 57777 777777777654
No 64
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=22.09 E-value=2.8e+02 Score=22.65 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=35.9
Q ss_pred CCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhc
Q 047875 27 VPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCS 91 (92)
Q Consensus 27 vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~ 91 (92)
.+.+...|.||+ +. ..-....--.+++|+.|++.+ .+.+| ++.+.+...+..
T Consensus 85 ~~P~LaiIlvGd-dp----------aS~~Yv~~k~K~a~~~GI~~~--~~~l~~~~te~ell~~I~~ 138 (345)
T PLN02897 85 KVPGLAVVLVGQ-QR----------DSQTYVRNKIKACEETGIKSL--LAELPEDCTEGQILSALRK 138 (345)
T ss_pred CCCeEEEEEeCC-Ch----------HHHHHHHHHHHHHHhcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 445899999997 21 112455667788899998875 56777 667777777654
No 65
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=22.08 E-value=1e+02 Score=24.93 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=35.5
Q ss_pred ceeEEEEeccCCC--chHHHHHHHH---HhhhhCCCCCCCceeeeCCHHHHHHhHh
Q 047875 40 EKKRFVVPISHLK--HPSFQNLLSQ---AGEEFGFDHPMGVLTIPCSEQVFFDLTC 90 (92)
Q Consensus 40 e~~RfvVpv~yL~--hP~F~~LL~~---aeeEfG~~~~~G~L~iPC~~~~F~~vl~ 90 (92)
..+=|..|.+.|- ..-|++.|.. +.++.. + =.|.+-||+..|+.++.
T Consensus 12 ~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~-idisVhCDv~iF~WLm~ 63 (317)
T PF11822_consen 12 EKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---E-IDISVHCDVHIFEWLMR 63 (317)
T ss_pred cceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---C-cceEEecChhHHHHHHH
Confidence 5678999988885 4679999976 444433 2 25999999999999875
No 66
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=22.01 E-value=60 Score=18.14 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=16.5
Q ss_pred HHHhhhhCCC--CCCCceeeeCCH
Q 047875 61 SQAGEEFGFD--HPMGVLTIPCSE 82 (92)
Q Consensus 61 ~~aeeEfG~~--~~~G~L~iPC~~ 82 (92)
++.+.++|.. |+||..-.||+.
T Consensus 8 e~~A~~~GC~G~H~mg~~WMPC~~ 31 (34)
T PF12518_consen 8 EKRAKELGCKGAHKMGDKWMPCSN 31 (34)
T ss_pred HHHHHHcCCcchhhccCccccCcc
Confidence 3455678876 678999999974
No 67
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.69 E-value=3.7e+02 Score=21.21 Aligned_cols=51 Identities=8% Similarity=0.249 Sum_probs=36.3
Q ss_pred CceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeee--CCHHHHHHhHhcC
Q 047875 29 KGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIP--CSEQVFFDLTCSL 92 (92)
Q Consensus 29 kG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~F~~vl~~l 92 (92)
.+...+.||+ +. ..-....--.++.++.|+..+ .+.+| |+.+.+...+..|
T Consensus 34 P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~s~~el~~~I~~l 86 (284)
T PRK14177 34 PKLATILVGN-NP----------ASETYVSMKVKACHKVGMGSE--MIRLKEQTTTEELLGVIDKL 86 (284)
T ss_pred CeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 4788999997 22 123445666778999999875 57777 7888888877643
No 68
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=21.58 E-value=64 Score=21.09 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=16.7
Q ss_pred CceeeeCCHHHHHHhHhcC
Q 047875 74 GVLTIPCSEQVFFDLTCSL 92 (92)
Q Consensus 74 G~L~iPC~~~~F~~vl~~l 92 (92)
..+.+-|+++.|.++++.|
T Consensus 65 ~~i~f~c~~e~L~~Li~~L 83 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKL 83 (95)
T ss_pred ceEEEEeCHHHHHHHHHHH
Confidence 4799999999999998765
No 69
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=21.36 E-value=1.6e+02 Score=19.03 Aligned_cols=42 Identities=31% Similarity=0.319 Sum_probs=34.1
Q ss_pred CCceEEEEeccC---ceeEEEEeccCCCchHH---HHHHHHHhhhhCC
Q 047875 28 PKGHFAVYIGEF---EKKRFVVPISHLKHPSF---QNLLSQAGEEFGF 69 (92)
Q Consensus 28 pkG~~aVyVG~~---e~~RfvVpv~yL~hP~F---~~LL~~aeeEfG~ 69 (92)
++-+.+.+.|+. ...++-+..-|+.|+.+ |.|+++|.|.|.-
T Consensus 28 ~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~~~~ek~~~~~k~ke~~~~ 75 (80)
T cd06080 28 KQKARVNFIGDNMQSEKKGIRVVKRWLKHFDCTEKQKLTNKAKESYEQ 75 (80)
T ss_pred CCEEEEEEeCCCCceeccchhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 667888888973 24678888899999999 5899999998863
No 70
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=20.66 E-value=1.6e+02 Score=19.15 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=24.0
Q ss_pred ceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeeeC
Q 047875 40 EKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPC 80 (92)
Q Consensus 40 e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iPC 80 (92)
..+||=|=.+- +++|+.++.+-|+.+.. +++|=+
T Consensus 12 r~~k~GV~A~s-----L~eL~~K~~~~l~l~~~--~~~lvL 45 (78)
T cd01615 12 RSRKKGVAASS-----LEELLSKACEKLKLPSA--PVTLVL 45 (78)
T ss_pred CCeeEEEEcCC-----HHHHHHHHHHHcCCCCC--CeEEEE
Confidence 45677666654 58999999999999743 444443
No 71
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.39 E-value=1e+02 Score=22.11 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=17.7
Q ss_pred EEecc---CCCchHHHHHHH---HHhhhhCCC
Q 047875 45 VVPIS---HLKHPSFQNLLS---QAGEEFGFD 70 (92)
Q Consensus 45 vVpv~---yL~hP~F~~LL~---~aeeEfG~~ 70 (92)
+||.. ++.||.|.++++ ++.+++||.
T Consensus 5 i~p~~~~~~~~~~~~~~~~~gi~~~a~~~g~~ 36 (283)
T cd06279 5 VLTDSLSYAFSDPVASQFLAGVAEVLDAAGVN 36 (283)
T ss_pred EeCCcccccccCccHHHHHHHHHHHHHHCCCE
Confidence 56643 378999999976 445567764
No 72
>PRK00110 hypothetical protein; Validated
Probab=20.02 E-value=4.1e+02 Score=20.40 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHHhhhhhccccCCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCCCCCceeeeCCHHHHHHhHhcC
Q 047875 13 QALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92 (92)
Q Consensus 13 ~~l~r~~s~~~~~~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~F~~vl~~l 92 (92)
+-+|...+.....-.+.|.+.-.-- ..-.++|+.. -..-++-.+++--+|++- .++|.+.|-|+...|..+...|
T Consensus 111 ~~vR~~f~K~gG~l~~~Gsv~~~Fe--~kG~i~~~~~-~~d~~~e~aieaGaeDv~--~e~~~~~i~~~p~~~~~v~~~L 185 (245)
T PRK00110 111 AEVRHAFSKNGGNLGETGSVSYMFD--RKGVIVIEPL-DEDELMEAALEAGAEDVE--TDDESFEVITAPEDFEAVRDAL 185 (245)
T ss_pred HHHHHHHHhcCceeCCCcceEEEec--cceEEEeCCC-CHHHHHHHHHhCCCCEee--ccCCeEEEEECHHHHHHHHHHH
Confidence 3344333322344556677654433 4567777733 111223333333344432 2337899999999999887643
Done!