BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047877
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 447 bits (1150), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/542 (43%), Positives = 333/542 (61%), Gaps = 14/542 (2%)
Query: 55 RPLGNFRPTIWKDGSISSPVLE--VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
RP+ +F P++W D +S + E Y + E +K+ + ML+A+ + + LI+++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDC-DLYATAILFRVFRQHGFNVSSGVFNK 171
RLG+SYHFE EI+E L+ I+ +C DL +A+ FR+ RQHGFN+S +F+K
Sbjct: 75 ERLGISYHFEKEIDEILDQIYNQN------SNCNDLCTSALQFRLLRQHGFNISPEIFSK 128
Query: 172 FKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLA 231
F+D +G FKESL SD G+L+LYEA+H+R H +DILE+AL F+T HL+S AAP+L L
Sbjct: 129 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES-AAPHLKSPLR 187
Query: 232 KHINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYI 290
+ + ALEQ LH GVPR+E FIS Y+ + SKN+ LL+FAKLDFN +Q+LH+QELA +
Sbjct: 188 EQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQV 247
Query: 291 TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXX 350
+RW K L+F +T Y+RDR VE Y W++ YFEP +S+ R++ K
Sbjct: 248 SRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAY 307
Query: 351 GTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKD 410
GT EL+ +TDA++RWDIN + LP+YMK Y A GRS+ V +
Sbjct: 308 GTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIE 367
Query: 411 MMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWL 470
MK VVR Y VE+ WF EGY PP E +SNA+ T T + +Y+G+ D +EWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQD-FEWL 426
Query: 471 RSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIAD 530
PKI+ AS + R+I D + + E+ RG +A+ +E M++YG S +E +F+ M
Sbjct: 427 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 531 GWKDINEECMRPTIVPMRLLNVIVNIARLVEVFY-KKMDGVTNPE-YLKDHVTKLFIDPI 588
WKDINE +RPT V L I+N+AR+VEV Y +DG T+PE LK H+ L +D I
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 546
Query: 589 LV 590
+
Sbjct: 547 KI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 447 bits (1149), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/542 (43%), Positives = 333/542 (61%), Gaps = 14/542 (2%)
Query: 55 RPLGNFRPTIWKDGSISSPVLE--VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
RP+ +F P++W D +S + E Y + E +K+ + ML+A+ + + LI+++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDC-DLYATAILFRVFRQHGFNVSSGVFNK 171
RLG+SYHFE EI+E L+ I+ +C DL +A+ FR+ RQHGFN+S +F+K
Sbjct: 75 ERLGISYHFEKEIDEILDQIYNQN------SNCNDLCTSALQFRLLRQHGFNISPEIFSK 128
Query: 172 FKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLA 231
F+D +G FKESL SD G+L+LYEA+H+R H +DILE+AL F+T HL+S AAP+L L
Sbjct: 129 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES-AAPHLKSPLR 187
Query: 232 KHINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYI 290
+ + ALEQ LH GVPR+E FIS Y+ + SKN+ LL+FAKLDFN +Q+LH+QELA +
Sbjct: 188 EQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQV 247
Query: 291 TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXX 350
+RW K L+F +T Y+RDR VE Y W++ YFEP +S+ R++ K
Sbjct: 248 SRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAY 307
Query: 351 GTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKD 410
GT EL+ +TDA++RWDIN + LP+YMK Y A GRS+ V +
Sbjct: 308 GTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIE 367
Query: 411 MMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWL 470
MK VVR Y VE+ WF EGY PP E +SNA+ T T + +Y+G+ D +EWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQD-FEWL 426
Query: 471 RSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIAD 530
PKI+ AS + R+I D + + E+ RG +A+ +E M++YG S +E +F+ M
Sbjct: 427 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 531 GWKDINEECMRPTIVPMRLLNVIVNIARLVEVFY-KKMDGVTNP-EYLKDHVTKLFIDPI 588
WKDINE +RPT V L I+N+AR+VEV Y +DG T+P E LK H+ L +D I
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
Query: 589 LV 590
+
Sbjct: 547 KI 548
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 447 bits (1149), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/543 (40%), Positives = 339/543 (62%), Gaps = 9/543 (1%)
Query: 49 NNQENDRPLGNFRPTIWKDGSISSP--VLEVETYDKLNEEMKDHVKEMLVASRNDPVEEV 106
+N++ RP +F+P+IW D ++ P ++ ET +K ++++K+ V++M+VA + +++
Sbjct: 16 SNKDEMRPKADFQPSIWGDLFLNCPDKNIDAET-EKRHQQLKEEVRKMIVAPMANSTQKL 74
Query: 107 VLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSS 166
I+ + RLGVSYHF EIE+ L +I+ D + DLY T+I FR+ R+HG+NVS
Sbjct: 75 AFIDSVQRLGVSYHFTKEIEDELENIYHNNND----AENDLYTTSIRFRLLREHGYNVSC 130
Query: 167 GVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNL 226
VFNKFKD GNFK S+TSD RG+L LY+A++LRVHGEDIL+EA++FTT HL S+A +L
Sbjct: 131 DVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHL-SLAVASL 189
Query: 227 DQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQE 286
D L++ ++ AL+Q + G+PR+EA ++S Y+ +S N LL+FAK+DFN +Q LH++E
Sbjct: 190 DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKE 249
Query: 287 LAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXX 346
L+ I RW K L+F Y+RDR VE Y W YFEP +S GR + TK
Sbjct: 250 LSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDT 309
Query: 347 XXXXGTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVS 406
T+ EL +T+A+ERWDI C+ E+PEYMKP Y A GR Y V
Sbjct: 310 YDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVE 369
Query: 407 FTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDA 466
+ K+ M + ++Y VEA+W + Y P F+E +NA+ T + +++G+GDI +
Sbjct: 370 YAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPET 429
Query: 467 YEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKK 526
++W S PKI+ AS + R + D+ +K + R S +E YM+EYG + +E + F K
Sbjct: 430 FKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNK 489
Query: 527 MIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTN-PEYLKDHVTKLFI 585
+ WKD+N+E ++PT +P +LN +N+AR+++V Y++ DG T + K +T L I
Sbjct: 490 HVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLI 549
Query: 586 DPI 588
+PI
Sbjct: 550 EPI 552
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/542 (43%), Positives = 332/542 (61%), Gaps = 14/542 (2%)
Query: 55 RPLGNFRPTIWKDGSISSPVLE--VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
RP+ +F P++W D +S + E Y K E +K+ + ML+A+ + + LI+ +
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 76
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDC-DLYATAILFRVFRQHGFNVSSGVFNK 171
RLG+SYHFE EI++ L+ I+ +C DL +A+ FR+ RQHGFN+S +F+K
Sbjct: 77 ERLGISYHFEKEIDDILDQIYNQN------SNCNDLCTSALQFRLLRQHGFNISPEIFSK 130
Query: 172 FKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLA 231
F+D +G FKESL SD G+L+LYEA+H+R H +DILE+AL F+T HL+S AAP+L L
Sbjct: 131 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES-AAPHLKSPLR 189
Query: 232 KHINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYI 290
+ + ALEQ LH GVPR+E FIS Y+ + SKN+ LL+FAKLDFN +Q+LH+QELA +
Sbjct: 190 EQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQV 249
Query: 291 TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXX 350
+RW K L+F +T Y+RDR VE Y W++ YFEP +S+ R++ K
Sbjct: 250 SRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAY 309
Query: 351 GTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKD 410
GT EL+ +TDA++RWDIN + LP+YMK Y A GRS+ V +
Sbjct: 310 GTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIE 369
Query: 411 MMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWL 470
MK VVR Y VE+ WF EGY PP E +SNA+ T T + +Y+G+ D +EWL
Sbjct: 370 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQD-FEWL 428
Query: 471 RSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIAD 530
PKI+ AS + R+I D + + E+ RG +A+ +E M++YG S +E +F+ M
Sbjct: 429 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 488
Query: 531 GWKDINEECMRPTIVPMRLLNVIVNIARLVEVFY-KKMDGVTNPE-YLKDHVTKLFIDPI 588
WKDINE +RPT V L I+N+AR+VEV Y +DG T+PE LK H+ L +D I
Sbjct: 489 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 548
Query: 589 LV 590
+
Sbjct: 549 KI 550
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/541 (43%), Positives = 331/541 (61%), Gaps = 12/541 (2%)
Query: 55 RPLGNFRPTIWKDGSISSPVLE--VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
RP+ +F P++W D +S + E Y K E +K+ + ML+A+ + + LI+ +
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 61
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKF 172
RLG+SYHFE EI++ L+ I+ + DL +A+ FR+ RQHGFN+S +F+KF
Sbjct: 62 ERLGISYHFEKEIDDILDQIYNQNSNCN-----DLCTSALQFRLLRQHGFNISPEIFSKF 116
Query: 173 KDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLAK 232
+D +G FKESL SD G+L+LYEA+H+R H +DILE+AL F+T HL+S AAP+L L +
Sbjct: 117 QDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES-AAPHLKSPLRE 175
Query: 233 HINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYIT 291
+ ALEQ LH GVPR+E FIS Y+ + SKN+ LL+FAKLDFN +Q+LH+QELA ++
Sbjct: 176 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVS 235
Query: 292 RWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXXG 351
RW K L+F +T Y+RDR VE Y W++ YFEP +S+ R++ K G
Sbjct: 236 RWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 295
Query: 352 TFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKDM 411
T EL+ +TDA++RWDIN + LP+YMK Y A GRS+ V +
Sbjct: 296 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIER 355
Query: 412 MKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLR 471
MK VVR Y VE+ WF EGY PP E +SNA+ T T + +Y+G+ D +EWL
Sbjct: 356 MKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQD-FEWLS 414
Query: 472 SQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADG 531
PKI+ AS + R+I D + + E+ RG +A+ +E M++YG S +E +F+ M
Sbjct: 415 KNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETA 474
Query: 532 WKDINEECMRPTIVPMRLLNVIVNIARLVEVFY-KKMDGVTNPE-YLKDHVTKLFIDPIL 589
WKDINE +RPT V L I+N+AR+VEV Y +DG T+PE LK H+ L +D I
Sbjct: 475 WKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIK 534
Query: 590 V 590
+
Sbjct: 535 I 535
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/542 (42%), Positives = 333/542 (61%), Gaps = 14/542 (2%)
Query: 55 RPLGNFRPTIWKDGSISSPVLE--VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
RP+ +F P++W D +S + E Y K E +K+ + ML+A+ + + LI+ +
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 76
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDC-DLYATAILFRVFRQHGFNVSSGVFNK 171
RLG+SYHFE EI++ L+ I+ +C DL +A+ FR+ RQHGFN+S +F+K
Sbjct: 77 ERLGISYHFEKEIDDILDQIYNQN------SNCNDLCTSALQFRLLRQHGFNISPEIFSK 130
Query: 172 FKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLA 231
F+D +G FKESL SD G+L+LYEA+H+R H +DILE+AL F+T HL+S AAP+L L
Sbjct: 131 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES-AAPHLKSPLR 189
Query: 232 KHINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYI 290
+ + ALEQ LH GVPR+E FIS Y+ + SKN+ LL+FAKLDFN +Q+LH+QELA +
Sbjct: 190 EQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQV 249
Query: 291 TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXX 350
+RW K L+F +T Y+RDR VE Y W++ YFEP +S+ R++ K
Sbjct: 250 SRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAY 309
Query: 351 GTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKD 410
GT EL+ +TDA++RWDIN + LP+YMK Y A GRS+ V +
Sbjct: 310 GTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIE 369
Query: 411 MMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWL 470
MK +VR Y VE+ WF EGY PP E +SNA+ T T +L +Y+G+ D +EWL
Sbjct: 370 RMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKSATEQD-FEWL 428
Query: 471 RSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIAD 530
PKI+ AS + R+I D + + E+ RG +A+ +E M++YG S +E +F+ M
Sbjct: 429 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 488
Query: 531 GWKDINEECMRPTIVPMRLLNVIVNIARLVEVFY-KKMDGVTNPE-YLKDHVTKLFIDPI 588
WKDINE +RPT V L I+N+AR++EV Y +DG T+PE LK H+ L +D I
Sbjct: 489 AWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 548
Query: 589 LV 590
+
Sbjct: 549 KI 550
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/542 (43%), Positives = 332/542 (61%), Gaps = 14/542 (2%)
Query: 55 RPLGNFRPTIWKDGSISSPVLE--VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
RP+ +F P++W D +S + E Y K E +K+ + ML+A+ + + LI+ +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDC-DLYATAILFRVFRQHGFNVSSGVFNK 171
RLG+SYHFE EI++ L+ I+ +C DL +A+ FR+ RQHGFN+S +F+K
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQN------SNCNDLCTSALQFRLLRQHGFNISPEIFSK 128
Query: 172 FKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLA 231
F+D +G FKESL SD G+L+LYEA+H+R H +DILE+AL F+T HL+S AAP+L L
Sbjct: 129 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES-AAPHLKSPLR 187
Query: 232 KHINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYI 290
+ + ALEQ LH GVPR+E FIS Y+ + SKN+ LL+FAKLDFN +Q+LH+QELA +
Sbjct: 188 EQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQV 247
Query: 291 TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXX 350
+RW K L+F +T Y+RDR VE Y W++ YFEP +S+ R++ K
Sbjct: 248 SRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAY 307
Query: 351 GTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKD 410
GT EL+ +TDA++RWDIN + LP+YMK Y A GRS+ V +
Sbjct: 308 GTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIE 367
Query: 411 MMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWL 470
MK VVR Y VE+ WF EGY PP E +SNA+ T T + +Y+G+ D +EWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQD-FEWL 426
Query: 471 RSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIAD 530
PKI+ AS + R+I D + + E+ RG +A+ +E M++YG S +E +F+ M
Sbjct: 427 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 531 GWKDINEECMRPTIVPMRLLNVIVNIARLVEVFY-KKMDGVTNPE-YLKDHVTKLFIDPI 588
WKDINE +RPT V L I+N+AR+VEV Y +DG T+PE LK H+ L +D I
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 546
Query: 589 LV 590
+
Sbjct: 547 KI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 444 bits (1141), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/542 (43%), Positives = 332/542 (61%), Gaps = 14/542 (2%)
Query: 55 RPLGNFRPTIWKDGSISSPVLE--VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
RP+ +F P++W D +S + E Y K E +K+ + ML+A+ + + LI+ +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDC-DLYATAILFRVFRQHGFNVSSGVFNK 171
RLG+SYHFE EI++ L+ I+ +C DL +A+ FR+ RQHGFN+S +F+K
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQN------SNCNDLCTSALQFRLLRQHGFNISPEIFSK 128
Query: 172 FKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLA 231
F+D +G FKESL SD G+L+LYEA+H+R H +DILE+AL F+T HL+S AAP+L L
Sbjct: 129 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES-AAPHLKSPLR 187
Query: 232 KHINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYI 290
+ + ALEQ LH GVPR+E FIS Y+ + SKN+ LL+FAKLDFN +Q+LH+QELA +
Sbjct: 188 EQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQV 247
Query: 291 TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXX 350
+RW K L+F +T Y+RDR VE Y W++ YFEP +S+ R++ K
Sbjct: 248 SRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAY 307
Query: 351 GTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKD 410
GT EL+ +TDA++RWDIN + LP+YMK Y A GRS+ V +
Sbjct: 308 GTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIE 367
Query: 411 MMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWL 470
MK VVR Y VE+ WF EGY PP E +SNA+ T T + +Y+G+ D +EWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQD-FEWL 426
Query: 471 RSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIAD 530
PKI+ AS + R+I D + + E+ RG +A+ +E M++YG S +E +F+ M
Sbjct: 427 SKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 531 GWKDINEECMRPTIVPMRLLNVIVNIARLVEVFY-KKMDGVTNP-EYLKDHVTKLFIDPI 588
WKDINE +RPT V L I+N+AR+VEV Y +DG T+P E LK H+ L +D I
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
Query: 589 LV 590
+
Sbjct: 547 KI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/542 (42%), Positives = 331/542 (61%), Gaps = 14/542 (2%)
Query: 55 RPLGNFRPTIWKDGSISSPVLE--VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
RP+ +F P++W D +S + E Y K E +K+ + ML+A+ + + LI+ +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDC-DLYATAILFRVFRQHGFNVSSGVFNK 171
RLG+SYHFE EI++ L+ I+ +C DL +A+ FR+ RQHGFN+S +F+K
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQN------SNCNDLCTSALQFRLLRQHGFNISPEIFSK 128
Query: 172 FKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLA 231
F+D +G FKESL SD G+L+LYEA+H+R H +DILE+AL F+T HL+S AAP+L L
Sbjct: 129 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES-AAPHLKSPLR 187
Query: 232 KHINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYI 290
+ + ALEQ LH GVPR+E FIS Y+ + SKN+ LL+FAKLDFN +Q+LH+QELA +
Sbjct: 188 EQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQV 247
Query: 291 TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXX 350
+RW K L+F +T Y+RDR VE Y ++ YFEP +S+ R++ K
Sbjct: 248 SRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAY 307
Query: 351 GTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKD 410
GT EL+ +TDA++RWDIN + LP+YMK Y A GRS+ V +
Sbjct: 308 GTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIE 367
Query: 411 MMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWL 470
MK VVR Y VE+ WF EGY PP E +SNA+ T T + +Y+G+ D +EWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQD-FEWL 426
Query: 471 RSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIAD 530
PKI+ AS + R+I D + + E+ RG +A+ +E M++YG S +E +F+ M
Sbjct: 427 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 531 GWKDINEECMRPTIVPMRLLNVIVNIARLVEVFY-KKMDGVTNP-EYLKDHVTKLFIDPI 588
WKDINE +RPT V L I+N+AR+VEV Y +DG T+P E LK H+ L +D I
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
Query: 589 LV 590
+
Sbjct: 547 KI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/542 (42%), Positives = 331/542 (61%), Gaps = 14/542 (2%)
Query: 55 RPLGNFRPTIWKDGSISSPVLE--VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
RP+ +F P++W D +S + E Y K E +K+ + ML+A+ + + LI+ +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDC-DLYATAILFRVFRQHGFNVSSGVFNK 171
RLG+SYHFE EI++ L+ I+ +C DL +A+ FR+ RQHGFN+S +F+K
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQN------SNCNDLCTSALQFRLLRQHGFNISPEIFSK 128
Query: 172 FKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLA 231
F+D +G FKESL SD G+L+LYEA+H+R H +DILE+AL F+T HL+S AAP+L L
Sbjct: 129 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES-AAPHLKSPLR 187
Query: 232 KHINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYI 290
+ + ALEQ LH GVPR+E FIS Y+ + SKN+ LL+FAKLDFN +Q+LH+QELA +
Sbjct: 188 EQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQV 247
Query: 291 TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXX 350
+RW K L+F +T Y+RDR VE Y ++ YFEP +S+ R++ K
Sbjct: 248 SRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAY 307
Query: 351 GTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKD 410
GT EL+ +TDA++RWDIN + LP+YMK Y A GRS+ V +
Sbjct: 308 GTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIE 367
Query: 411 MMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWL 470
MK VVR Y VE+ WF EGY PP E +SNA+ T T + +Y+G+ D +EWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQD-FEWL 426
Query: 471 RSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIAD 530
PKI+ AS + R+I D + + E+ RG +A+ +E M++YG S +E +F+ M
Sbjct: 427 SKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 531 GWKDINEECMRPTIVPMRLLNVIVNIARLVEVFY-KKMDGVTNP-EYLKDHVTKLFIDPI 588
WKDINE +RPT V L I+N+AR+VEV Y +DG T+P E LK H+ L +D I
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
Query: 589 LV 590
+
Sbjct: 547 KI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 272 bits (696), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 168/538 (31%), Positives = 264/538 (49%), Gaps = 4/538 (0%)
Query: 55 RPLGNFRPTIWK-DGSISSPVLE-VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
R ++ P W D +SS E +E Y ++++ V+ + + + + + LI+ +
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNV 74
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKF 172
RLG+ Y FE++I L+ F L+ATA+ FR+ RQHGF VS F+ F
Sbjct: 75 QRLGLGYRFESDIRRALDR-FVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGF 133
Query: 173 KDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLAK 232
KD +GNF E+L D + +LSLYEA+ L + GE+IL+EA F +HLK ++ + + LA+
Sbjct: 134 KDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELAE 193
Query: 233 HINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYITR 292
+N ALE PLH R+EA I Y + N LL+ A LD+N +Q ++Q++L +R
Sbjct: 194 QVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSR 253
Query: 293 WMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXXGT 352
W + + + ++RDR +E + W+V FEP +S R K GT
Sbjct: 254 WWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGT 313
Query: 353 FGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKDMM 412
EL+ FTDAVERWD+N +++LP+YMK + A + +
Sbjct: 314 LDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAW 373
Query: 413 KGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRS 472
+ A+ EA+W P FD+ NA + + L AY + + E L+
Sbjct: 374 ADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQK 433
Query: 473 QPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGW 532
I++ + RL DL S AE RG A+ V YM+ G S E E +I + W
Sbjct: 434 YHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETW 493
Query: 533 KDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEYL-KDHVTKLFIDPIL 589
K +N+E + ++ + +N+AR Y D T+P+ L + V + +PIL
Sbjct: 494 KKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 180/552 (32%), Positives = 263/552 (47%), Gaps = 29/552 (5%)
Query: 55 RPLGNFRPTIWKDG---SISSPVLEVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINL 111
R GN++P +W S+++P E D+ E+ V+ +L+ + +PV+++ LI+
Sbjct: 6 RRSGNYQPALWDSNYIQSLNTPYTEERHLDR-KAELIVQVR-ILLKEKMEPVQQLELIHD 63
Query: 112 LCRLGVSYHFENEIEERLNHIFEMQPDLAAEK--DCDLYATAILFRVFRQHGFNVSSGVF 169
L LG+S F++EI+E L I+ + DLY TA+ FR+ RQHGFN+S VF
Sbjct: 64 LKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVF 123
Query: 170 NKFKDHDG-NFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSM---AAPN 225
N FK+ G +FK SL D +GML LYEA+ L GED LE A F T L+
Sbjct: 124 NCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNE 183
Query: 226 LDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQ 285
+D+NL I +L+ PLH + +EA FI Y N + + AKL+FN +Q HQQ
Sbjct: 184 IDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQ 243
Query: 286 ELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPH-FSRGRIIFTKXXXXXXXXX 344
EL ++RW L F + RDR VE + W+V FEPH R +
Sbjct: 244 ELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGM-FEPHQHGYQRKMAATIIVLATVID 302
Query: 345 XXXXXXGTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYS 404
GT EL+ FTD +RWD ++ LP YM+ Y +
Sbjct: 303 DIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFC 362
Query: 405 VSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERM--------SNAIVTGTCFLDPAAAYI 456
+ + + + +V AYF EA+W+ GY P DE + S AI++ T F A++
Sbjct: 363 LQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASH- 421
Query: 457 GLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTS 516
D A ID+ L I+ + + RL DL ++ E RG V ++ YMKE S
Sbjct: 422 ---DTAVIDS---LYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNAS 475
Query: 517 GEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGV-TNPEY 575
EE E K +I + WKD+N P ++ NI R+ + Y DG
Sbjct: 476 EEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSK 535
Query: 576 LKDHVTKLFIDP 587
+H+ L +P
Sbjct: 536 TYEHIAGLLFEP 547
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 172/511 (33%), Positives = 247/511 (48%), Gaps = 8/511 (1%)
Query: 58 GNFRPTIWKDGSISSPVLEVETYDKLNEE--MKDHVKEMLVASRNDPVEEVVLINLLCRL 115
G ++PT+W +I S E + L M D VK M++ D + + LI+ L RL
Sbjct: 38 GGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVK-MMLQEEVDSIRRLELIDDLRRL 96
Query: 116 GVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDH 175
G+S HFE EI E LN + ++ + DLY+TA+ FR+ RQ+ F+VS VF+ FK+
Sbjct: 97 GISCHFEREIVEILNSKYYTNNEI---DERDLYSTALRFRLLRQYDFSVSQEVFDCFKNA 153
Query: 176 DG-NFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLAKHI 234
G +FK SL D RG+L LYEA+ L GE+ L A F T L+ + D NL I
Sbjct: 154 KGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSI 213
Query: 235 NDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYITRWM 294
ALE P H V A FI Y+ N T+L+ AKLDFN VQ QQEL +RW
Sbjct: 214 ERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWW 273
Query: 295 KGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXXGTFG 354
+ RDR VE Y W+ RI+ TK GT
Sbjct: 274 NSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLE 333
Query: 355 ELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKDMMKG 414
ELQ FT A++RWDI + +LP YM+ Y A S + + + G
Sbjct: 334 ELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVG 393
Query: 415 VVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQP 474
++ +Y +EA+W+ +G+ P +E M N+ ++ + + L D +A E +
Sbjct: 394 LIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYH 453
Query: 475 KIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKD 534
I+ AS T+ RL D+ ++ E ERG V V+ YM E S EE E + +I WK
Sbjct: 454 DIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKM 513
Query: 535 INEECMRPTIVPMRLLNVIVNIARLVEVFYK 565
+N+E M + + V N+AR+ + Y+
Sbjct: 514 MNKEMMTSSFSKY-FVEVSANLARMAQWIYQ 543
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 158/521 (30%), Positives = 256/521 (49%), Gaps = 35/521 (6%)
Query: 101 DPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAA-----EKDCDLYATAILFR 155
D +E +++++ + RLG+ HFE EI+E L++++ + DL TA+ FR
Sbjct: 297 DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFR 356
Query: 156 VFRQHGFNVSSGVFNKFKDHDGNFKES---LTSDARGMLSLYEATHLRVHGEDILEEALT 212
+ R H +NVS +F+ FKD +G F S D ML+LY A+ L GE+IL+EA +
Sbjct: 357 LLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKS 416
Query: 213 FTTAHLK-------SMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSK- 264
F T +L+ + +A N QNL++ I AL+ H VPR+EA ++ Y D ++
Sbjct: 417 FATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARI 476
Query: 265 -----------NDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEI 313
N+ L+ KLDFN +Q +HQ+E+ +T W + ++++R+R +E
Sbjct: 477 AKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLEF 535
Query: 314 YLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXXGTFGELQRFTDAVERWDINCVSE 373
Y A +EP +++ R +FTK GT EL+ FT+AV RWD++
Sbjct: 536 YFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTEN 595
Query: 374 LPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPP 433
LP+YMK Y VSF + + + Y+ EA+W YVP
Sbjct: 596 LPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPT 655
Query: 434 FDERMSNAIVT-GTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFT--LSRLIADL 490
DE + N I + G L + I G + +A E + + + +SRL D
Sbjct: 656 LDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDT 715
Query: 491 VSNKAEQERGHVASVVESYMKEYGTSGEETA-EEFKKMIADGWKDINEECMRPTIVPMRL 549
+ KAE+ RG +AS +E YMK++ EE A + ++ K++ E ++P VP
Sbjct: 716 KTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFAC 775
Query: 550 LNVIVNIARLVEVFYKKMD--GVTNPEYLKDHVTKLFIDPI 588
++ R+ V +K D GV+ E +KDH+ + I+P+
Sbjct: 776 KKMLFEETRVTMVIFKDGDGFGVSKLE-VKDHIKECLIEPL 815
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 234 bits (597), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 162/544 (29%), Positives = 258/544 (47%), Gaps = 15/544 (2%)
Query: 55 RPLGNFRPTIWKDGSISSPVLEVETYDK---LNEEMKDHVKEMLVASRNDPVEEVVLINL 111
R GN+ P+ W I S +L DK E+ VK M + D + ++ LI+
Sbjct: 2 RRSGNYNPSRWDVNFIQS-LLSDYKEDKHVIRASELVTLVK-MELEKETDQIRQLELIDD 59
Query: 112 LCRLGVSYHFENEIEERLNHIF---EMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGV 168
L R+G+S HF+NE +E L+ I+ + +++ DLY+T++ FR+ R+HGF V+ V
Sbjct: 60 LQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEV 119
Query: 169 FNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLK-SMAAPNLD 227
F+ FK+ +G FKESL+ D RG+L LYEA+ L GE LE A F T L+ + +D
Sbjct: 120 FDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVD 179
Query: 228 QNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQEL 287
+L I +L+ PLH + R A +I +Y N +L+ A LD N VQ Q+EL
Sbjct: 180 GDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEEL 239
Query: 288 AYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXX 347
RW + F ++RDR VE Y W+ + RI+ K
Sbjct: 240 KESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIY 299
Query: 348 XXXGTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSF 407
GT EL++FTD + RWDIN + +LP+YM+ + A + +
Sbjct: 300 DVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPY 359
Query: 408 TKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAI--VTGTCFLDPAAAYIGLGDIAGID 465
+ + Y VEA+WF G+ P +E + N+ ++G C L + + D +
Sbjct: 360 LRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCML--THIFFRVTDSFTKE 417
Query: 466 AYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFK 525
+ L ++ S + RL DL ++ E RG V ++ YM +Y S E + K
Sbjct: 418 TVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVK 477
Query: 526 KMIADGWKDIN-EECMRPTIVPMRLLNVIVNIARLVEVFYKKMDG-VTNPEYLKDHVTKL 583
+IA+ WK +N E + + + V++ R+ ++ Y DG T + +T+
Sbjct: 478 WLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRT 537
Query: 584 FIDP 587
+P
Sbjct: 538 LFEP 541
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 156/520 (30%), Positives = 251/520 (48%), Gaps = 38/520 (7%)
Query: 101 DPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPD--LAAEKDC---DLYATAILFR 155
D +E + L++ + LG+ HF+ EI+ L++++ + + +D DL TA+ R
Sbjct: 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLR 304
Query: 156 VFRQHGFNVSSGVFNKFKDHDGNFKESLTS---DARGMLSLYEATHLRVHGEDILEEALT 212
R HG+NVSS V N FKD +G F S + R +++L+ A+ L E +++A
Sbjct: 305 TLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARK 364
Query: 213 FTTAHLKSMAAPNLDQN--LAKHINDALEQPLHMGVPRIEAHKFISFYEHD--------- 261
F +L+ A + N L K I +E P HM +PR+EA +I Y+ +
Sbjct: 365 FAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLY 424
Query: 262 ---DSKNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSV 318
N L+ AKLDFN VQ LHQ+EL +TRW K +++R R E+Y S
Sbjct: 425 RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADI-NFTRHRVAEVYFSSA 483
Query: 319 AQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXXGTFGELQRFTDAVERWDINCVSELPEYM 378
FEP +S RI FTK T EL+ FT+ V+RWD + + E+PE M
Sbjct: 484 T--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECM 541
Query: 379 KPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERM 438
+ + ++ + + Y E +W GY+P F+E +
Sbjct: 542 QTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYL 601
Query: 439 SNAIVT---GTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLS-RLIADLVSNK 494
++ G C L P + +G++ D E + P M +LS RL D + +
Sbjct: 602 KTYAISVGLGPCTLQPI---LLMGELVKDDVVEKVH-YPSNMFELVSLSWRLTNDTKTYQ 657
Query: 495 AEQERGHVASVVESYMKEY-GTSGEETAEEFKKMIADGWKDINEECMRPT-IVPMRLLNV 552
AE+ RG AS + YMK+ G + E+ + +++ K+ + E +P+ +PM +
Sbjct: 658 AEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSF 717
Query: 553 IVNIARLVEVFYKKMD--GVTNPEYLKDHVTKLFIDPILV 590
I N+ V++FYK +D G+ N E +KD++ K++IDPI V
Sbjct: 718 IFNLRLCVQIFYKFIDGYGIANEE-IKDYIRKVYIDPIQV 756
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 155/523 (29%), Positives = 260/523 (49%), Gaps = 42/523 (8%)
Query: 101 DPVEEVVLINLLCRLGVSYHFENEIEERLNHIF----EMQPDLAAEKDC-DLYATAILFR 155
D E + ++ + RLG+ HF+ EI+E L++++ E A E D+ TA+ R
Sbjct: 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLR 328
Query: 156 VFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARG---MLSLYEATHLRVHGEDILEEALT 212
+ R HG+NVSS V F+D +G F L RG ML++ +H+ GE I+EEA
Sbjct: 329 ILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKL 388
Query: 213 FTTAHLKSMAAPNLD--------QNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDS- 263
T +L++ A N+D +N+ + AL+ P H +PR+EA +I Y DD
Sbjct: 389 CTERYLRN-ALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVW 447
Query: 264 -----------KNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVE 312
N+ L+ AKLDFN+VQ +HQ EL + RW K F + +++R+R E
Sbjct: 448 LGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTE 506
Query: 313 IYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXXGTFGELQRFTDAVERWDINCVS 372
IY + FEP FS+ R ++TK G+ +L+ FT++V+RWD++ V
Sbjct: 507 IYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVD 566
Query: 373 ELPEYMKPLY-GAXXXXXXXXXXXXXXXGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYV 431
++P+ MK + G GR + + +++ K + AY EA+W YV
Sbjct: 567 QMPQQMKICFVGFYNTFNDIAKEGRERQGRDV-LGYIQNVWKVQLEAYTKEAEWSEAKYV 625
Query: 432 PPFDERMSNA---IVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIA 488
P F+E + NA I GT L A + G++ + + + + + RL+
Sbjct: 626 PSFNEYIENASVSIALGTVVLISA---LFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVN 682
Query: 489 DLVSNKAEQERGHVASVVESYMKEY-GTSGEETAEEFKKMIADGWKDINEECMRPTIVPM 547
D + +AE+ +G VAS ++ YMK++ S EE + ++ + +++N E + I P
Sbjct: 683 DTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNKI-PD 741
Query: 548 RLLNVIVNIARLVEVFYKKMDGVT--NPEYLKDHVTKLFIDPI 588
++ AR++++FY + DG+T + +K+HV P+
Sbjct: 742 IYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 36/266 (13%)
Query: 101 DPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLA-AEKDC----DLYATAILFR 155
D E + +++ L RLG+S +FE EI+E L+++ D C D+ TA+ FR
Sbjct: 244 DLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFR 303
Query: 156 VFRQHGFNVSSGVFNKFKDHD------GNFKESLTSDARGMLSLYEATHLRVHGEDILEE 209
+ RQHG+ VS+ VF F+ G +++T GM +LY A+ L E+IL+
Sbjct: 304 LLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVT----GMFNLYRASQLAFPREEILKN 359
Query: 210 ALTFTTAHL--KSMAAPNLD-----QNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDD 262
A F+ +L K +D ++L I ALE P + +PR+E +I Y ++
Sbjct: 360 AKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGEN 419
Query: 263 S-------------KNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDR 309
N+ L+ AK D+N Q HQ E +W + N S + R
Sbjct: 420 DVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE-NRLSEWGVRRSE 478
Query: 310 TVEIYLWSVAQYFEPHFSRGRIIFTK 335
+E Y + A FE S R+++ K
Sbjct: 479 LLECYYLAAATIFESERSHERMVWAK 504
>pdb|2WQQ|A Chain A, Crystallographic Analysis Of Monomeric Cstii
Length = 291
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 40/115 (34%)
Query: 414 GVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQ 473
G Y +++ G FD + N + F + + YIG I A E+L
Sbjct: 144 GYKEIYLSGIDFYQNGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKT 203
Query: 474 PKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMI 528
KI + L+A+ + + +Y K+ E +F K I
Sbjct: 204 YKIKLYCLCPNSLLANFIGLAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNI 258
>pdb|2X62|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii Y81f In
Complex With Cmp
pdb|2X62|B Chain B, Crystal Structure Of The Sialyltransferase Cst-Ii Y81f In
Complex With Cmp
Length = 259
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 40/115 (34%)
Query: 414 GVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQ 473
G Y +++ G FD + N + F + + YIG I A E+L
Sbjct: 144 GYKEIYLSGIDFYQNGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKT 203
Query: 474 PKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMI 528
KI + L+A+ + + +Y K+ E +F K I
Sbjct: 204 YKIKLYCLCPNSLLANFIGLAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNI 258
>pdb|1RO8|A Chain A, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cytidine-5'-monophosphate
pdb|1RO8|B Chain B, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cytidine-5'-monophosphate
Length = 262
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 40/115 (34%)
Query: 414 GVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQ 473
G Y +++ G FD + N + F + + YIG I A E+L
Sbjct: 147 GYKEIYLSGIDFYQNGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKT 206
Query: 474 PKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMI 528
KI + L+A+ + + +Y K+ E +F K I
Sbjct: 207 YKIKLYCLCPNSLLANFIGLAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNI 261
>pdb|2DRJ|A Chain A, Xray Structure Of Alpha-2,38-Sialyltransferase Cstii F91y
Mutant
Length = 262
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 40/115 (34%)
Query: 414 GVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQ 473
G Y +++ G FD + N + F + + YIG I A E+L
Sbjct: 147 GYKEIYLSGIDFYQNGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKT 206
Query: 474 PKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMI 528
KI + L+A+ + + +Y K+ E +F K I
Sbjct: 207 YKIKLYCLCPNSLLANFIGLAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNI 261
>pdb|1RO7|A Chain A, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|B Chain B, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|C Chain C, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|D Chain D, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac
Length = 259
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 40/115 (34%)
Query: 414 GVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQ 473
G Y +++ G FD + N + F + + YIG I A E+L
Sbjct: 144 GYKEIYLSGIDFYQNGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKT 203
Query: 474 PKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMI 528
KI + L+A+ + + +Y K+ E +F K I
Sbjct: 204 YKIKLYCLCPNSLLANFIELAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNI 258
>pdb|2X61|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii In
Complex With Trisaccharide Acceptor And Cmp
pdb|2X61|B Chain B, Crystal Structure Of The Sialyltransferase Cst-Ii In
Complex With Trisaccharide Acceptor And Cmp
Length = 258
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 40/115 (34%)
Query: 414 GVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQ 473
G Y +++ G FD + N + F + + YIG I A E+L
Sbjct: 144 GYKEIYLSGIDFYQNGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKT 203
Query: 474 PKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMI 528
KI + L+A+ + + +Y K+ E +F K I
Sbjct: 204 YKIKLYCLCPNSLLANFIGLAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNI 258
>pdb|2X63|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii N51a In
Complex With Cmp
Length = 258
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 40/115 (34%)
Query: 414 GVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQ 473
G Y +++ G FD + N + F + + YIG I A E+L
Sbjct: 143 GYKEIYLSGIDFYQNGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKT 202
Query: 474 PKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMI 528
KI + L+A+ + + +Y K+ E +F K I
Sbjct: 203 YKIKLYCLCPNSLLANFIGLAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNI 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,767,690
Number of Sequences: 62578
Number of extensions: 670801
Number of successful extensions: 1929
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1804
Number of HSP's gapped (non-prelim): 41
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)