Query 047877
Match_columns 590
No_of_seqs 231 out of 898
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 5E-153 1E-157 1275.3 50.7 533 55-587 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 6E-137 1E-141 1169.4 44.1 485 99-590 267-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 1E-108 3E-113 933.0 40.7 448 99-589 307-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 1.2E-55 2.5E-60 426.0 12.8 173 65-238 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 1.4E-48 3E-53 397.2 18.6 269 268-536 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 5.6E-46 1.2E-50 380.7 29.2 283 282-564 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 4.2E-34 9.1E-39 297.2 21.5 251 283-539 11-265 (303)
8 PLN02150 terpene synthase/cycl 100.0 6.1E-31 1.3E-35 228.8 9.8 94 497-590 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 8.3E-21 1.8E-25 185.9 10.7 229 316-558 2-243 (243)
10 PF06330 TRI5: Trichodiene syn 97.7 0.00042 9E-09 73.9 12.6 194 323-538 78-276 (376)
11 cd00686 Terpene_cyclase_cis_tr 97.6 0.00089 1.9E-08 70.4 14.0 195 325-542 80-279 (357)
12 PF00494 SQS_PSY: Squalene/phy 88.8 8.8 0.00019 39.1 13.6 185 327-538 17-218 (267)
13 cd00867 Trans_IPPS Trans-Isopr 87.7 6.5 0.00014 39.1 11.6 118 404-537 86-214 (236)
14 cd00685 Trans_IPPS_HT Trans-Is 83.5 27 0.00058 35.7 13.9 121 403-537 108-239 (259)
15 TIGR03465 HpnD squalene syntha 82.5 62 0.0013 33.2 17.4 197 328-556 18-226 (266)
16 cd00683 Trans_IPPS_HH Trans-Is 78.7 67 0.0015 32.8 14.9 195 328-558 24-237 (265)
17 TIGR03464 HpnC squalene syntha 71.1 1.3E+02 0.0028 30.9 17.4 119 313-457 7-130 (266)
18 TIGR02749 prenyl_cyano solanes 66.3 1.4E+02 0.003 31.8 14.1 88 403-494 133-220 (322)
19 PLN02890 geranyl diphosphate s 61.2 1.4E+02 0.0031 33.1 13.3 89 403-495 227-315 (422)
20 PLN02857 octaprenyl-diphosphat 60.4 70 0.0015 35.5 10.7 88 404-495 228-315 (416)
21 COG0142 IspA Geranylgeranyl py 53.8 1.8E+02 0.0039 31.0 12.3 106 403-515 134-251 (322)
22 TIGR02748 GerC3_HepT heptapren 51.3 2.5E+02 0.0055 29.7 12.9 86 404-495 130-217 (319)
23 KOG1719 Dual specificity phosp 49.7 12 0.00026 35.8 2.3 30 498-527 119-149 (183)
24 PF10776 DUF2600: Protein of u 48.0 3.8E+02 0.0083 28.8 14.0 138 429-584 174-311 (330)
25 PLN02632 phytoene synthase 42.9 4.5E+02 0.0097 28.1 17.1 192 329-550 74-281 (334)
26 COG3707 AmiR Response regulato 42.6 18 0.0004 35.7 2.4 46 484-529 128-174 (194)
27 PF03861 ANTAR: ANTAR domain; 38.9 23 0.0005 27.6 2.0 29 502-530 15-43 (56)
28 CHL00151 preA prenyl transfera 35.1 5.7E+02 0.012 27.1 12.7 85 404-495 135-222 (323)
29 KOG3887 Predicted small GTPase 35.0 56 0.0012 33.8 4.5 182 320-518 87-314 (347)
30 PF12368 DUF3650: Protein of u 28.8 39 0.00084 23.0 1.5 18 508-525 9-26 (28)
31 PF13798 PCYCGC: Protein of un 28.5 54 0.0012 31.4 3.0 33 509-548 126-158 (158)
32 PRK10888 octaprenyl diphosphat 26.9 7.9E+02 0.017 26.1 14.7 88 403-495 130-218 (323)
33 PF14164 YqzH: YqzH-like prote 25.0 35 0.00076 27.8 0.9 21 152-172 9-29 (64)
34 smart00400 ZnF_CHCC zinc finge 24.9 60 0.0013 25.0 2.3 25 500-524 30-54 (55)
35 smart00463 SMR Small MutS-rela 24.4 88 0.0019 25.7 3.3 23 513-535 7-29 (80)
36 PRK10581 geranyltranstransfera 22.7 4.5E+02 0.0097 27.6 9.0 112 413-537 152-276 (299)
37 PF12469 DUF3692: CRISPR-assoc 22.1 1.1E+02 0.0023 27.6 3.6 41 498-539 77-117 (117)
38 PF01713 Smr: Smr domain; Int 21.7 90 0.002 25.9 2.9 26 513-538 4-29 (83)
39 COG1093 SUI2 Translation initi 21.6 95 0.0021 32.2 3.5 66 491-559 95-170 (269)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=5e-153 Score=1275.34 Aligned_cols=533 Identities=50% Similarity=0.858 Sum_probs=510.0
Q ss_pred CCCCCCCCCCCCC-CCcCC-Ccc-hhhhHHHHHHHHHHHHHHHHhhc--CCCcccchhHhHHHhhhCcccccHHHHHHHH
Q 047877 55 RPLGNFRPTIWKD-GSISS-PVL-EVETYDKLNEEMKDHVKEMLVAS--RNDPVEEVVLINLLCRLGVSYHFENEIEERL 129 (590)
Q Consensus 55 r~~~~~~ps~W~~-~fl~~-~~~-~~~~~~~~~e~lk~~vr~~l~~~--~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L 129 (590)
||++|||||+||| +|+++ ++. +...+.+++++||++||+||... +.|++++|+|||+||||||+|||++||+++|
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L 80 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEIL 80 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence 7899999999999 55555 443 23378999999999999999865 6799999999999999999999999999999
Q ss_pred HHHHhhCCccccCCCCChhhHHHHHHHhhhcCccccccccccccccccccccccccChHHHhhHhhhcccCCCCchHHHH
Q 047877 130 NHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEE 209 (590)
Q Consensus 130 ~~iy~~~~~~~~~~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLde 209 (590)
++||++|.+.+...+.||++|||+|||||||||+||||||++|||++|+|++++.+||+||||||||||+++|||+||||
T Consensus 81 ~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLde 160 (542)
T cd00684 81 DYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDE 160 (542)
T ss_pred HHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHH
Confidence 99999985422113579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCC--CChhHHHHHHHHhcCCccCCchhhhHhhhHhhccCCCcCCHHHHHHHhhhhHHHhhhhHHHH
Q 047877 210 ALTFTTAHLKSMAAPN--LDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQEL 287 (590)
Q Consensus 210 a~~ft~~~L~~~~~~~--~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El 287 (590)
|+.||++||++.++++ ++++|+++|++||++|||+++||+|||+||++|++++++|++||||||||||+||++||+||
T Consensus 161 A~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El 240 (542)
T cd00684 161 ALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEEL 240 (542)
T ss_pred HHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHH
Confidence 9999999999998732 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcC
Q 047877 288 AYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWD 367 (590)
Q Consensus 288 ~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD 367 (590)
++++|||+++||..++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||++|++.||+||+|||
T Consensus 241 ~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd 320 (542)
T cd00684 241 KILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWD 320 (542)
T ss_pred HHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhcc
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhccccccc
Q 047877 368 INCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTC 447 (590)
Q Consensus 368 ~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~ 447 (590)
.++++.+|+|||+||.++++++++++.++.+++++++++|++++|+++++||++||+|+++||+||++|||++|++|+|+
T Consensus 321 ~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~ 400 (542)
T cd00684 321 ISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGL 400 (542)
T ss_pred ccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhH
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHHHHHHHHHHH
Q 047877 448 FLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKM 527 (590)
Q Consensus 448 ~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~m 527 (590)
++++++++++||..+|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+|+|+|++++++|
T Consensus 401 ~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ 480 (542)
T cd00684 401 GPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKM 480 (542)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCHhHHHHHHHHhhhhchhcccCCCCCCchh-HHHHHHHHhccc
Q 047877 528 IADGWKDINEECMRP-TIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEY-LKDHVTKLFIDP 587 (590)
Q Consensus 528 i~~~wk~ln~e~l~~-~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~p 587 (590)
|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|+. ||++|++||++|
T Consensus 481 ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 481 IEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 999999999999997 789999999999999999999999999999966 999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=6e-137 Score=1169.36 Aligned_cols=485 Identities=25% Similarity=0.409 Sum_probs=459.3
Q ss_pred CCCcccchhHhHHHhhhCcccccHHHHHHHHHHHHhhCCccccCCCCChhhHHHHHHHhhhcCccccccccccccccccc
Q 047877 99 RNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGN 178 (590)
Q Consensus 99 ~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~iy~~~~~~~~~~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G~ 178 (590)
|.+.++++++||+||||||+|||++||+++|+++|++|.++......|+++|||+|||||||||+||||||++|+|+ |
T Consensus 267 p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~-~- 344 (784)
T PLN02279 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAED-H- 344 (784)
T ss_pred cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-c-
Confidence 57899999999999999999999999999999999998542111246999999999999999999999999999965 4
Q ss_pred ccccc---ccChHHHhhHhhhcccCCCCchHHHHHHHHHHHHHhhccCC------CCChhHHHHHHHHhcCCccCCchhh
Q 047877 179 FKESL---TSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAP------NLDQNLAKHINDALEQPLHMGVPRI 249 (590)
Q Consensus 179 F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~------~~~~~l~~~V~~aL~~P~~~~~~rl 249 (590)
|++++ .+||+||||||||||+++|||+|||||+.||++||++.+++ .+.++|++||+|||++|||+++||+
T Consensus 345 F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~Rl 424 (784)
T PLN02279 345 FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERL 424 (784)
T ss_pred ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHH
Confidence 99998 59999999999999999999999999999999999998763 1467899999999999999999999
Q ss_pred hHhhhHhhccCCCc------------CCHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHhhh
Q 047877 250 EAHKFISFYEHDDS------------KNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWS 317 (590)
Q Consensus 250 ear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~ 317 (590)
|||+||++|++++. +|++||||||+|||+||++||+||++++|||+++|| .++||||||++|||||+
T Consensus 425 EaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~a 503 (784)
T PLN02279 425 ANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSA 503 (784)
T ss_pred HHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHH
Confidence 99999999999875 899999999999999999999999999999999999 59999999999999999
Q ss_pred hccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcCcc-cccCCCCchHHHHHHHHHHHHHHHHHH
Q 047877 318 VAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDIN-CVSELPEYMKPLYGALLNLFDELNNEL 396 (590)
Q Consensus 318 ~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD~~-~~~~lPeymk~~~~al~~t~~ei~~~~ 396 (590)
+|++|||+||.+|++|||.+++++++||+||+|||+||++.||+||+|||.+ .++.+|+|||+||.+++++++|++.++
T Consensus 504 aa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~ 583 (784)
T PLN02279 504 AATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKA 583 (784)
T ss_pred HHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 568999999999999999999999875
Q ss_pred H-HcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhH
Q 047877 397 A-EEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPK 475 (590)
Q Consensus 397 ~-~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~ 475 (590)
. ++|+ ++.+|++++|++++++|++||+|+.+||+||+||||+|+.+|+|++++++.+++++|..+|+|+++| .++|+
T Consensus 584 ~~~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~-~~~~~ 661 (784)
T PLN02279 584 FTWQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDS-PELHK 661 (784)
T ss_pred HHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhC-cchhH
Confidence 5 5666 8899999999999999999999999999999999999999999999999999999999999999999 69999
Q ss_pred HHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHhHHH
Q 047877 476 IMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEY--GTSGEETAEEFKKMIADGWKDINEECMRP--TIVPMRLLN 551 (590)
Q Consensus 476 i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~--g~S~EeA~~~i~~mi~~~wk~ln~e~l~~--~~~p~~~~~ 551 (590)
|+++++.|+||+|||+||++|+++||+ |+|+|||+|+ |+|+|||+++++++|+++||+||++++++ +++|++|++
T Consensus 662 L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~~~ 740 (784)
T PLN02279 662 LYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPRECKD 740 (784)
T ss_pred HHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 999999999999999999999999998 9999999996 89999999999999999999999999964 579999999
Q ss_pred HHHHHhhhhchhcccCCCCCCchhHHHHHHHHhccccCC
Q 047877 552 VIVNIARLVEVFYKKMDGVTNPEYLKDHVTKLFIDPILV 590 (590)
Q Consensus 552 ~~~N~aR~~~~~Y~~~Dg~t~~~~~k~~i~~ll~~pi~i 590 (590)
.++|+||++++||+++||||.+ .||++|++||++||++
T Consensus 741 ~~ln~aR~~~~~Y~~~Dgyt~~-~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 741 LFWKMSKVLHLFYRKDDGFTSN-DMMSLVKSVIYEPVSL 778 (784)
T ss_pred HHHHHHHhhhhheeCCCCCChH-HHHHHHHHHhccCCcC
Confidence 9999999999999999999975 6999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1.4e-108 Score=932.97 Aligned_cols=448 Identities=23% Similarity=0.339 Sum_probs=407.0
Q ss_pred CCCcccchhHhHHHhhhCcccccHHHHHHHHHHHHhhCCccc--c-C--CCCChhhHHHHHHHhhhcCcccccccccccc
Q 047877 99 RNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLA--A-E--KDCDLYATAILFRVFRQHGFNVSSGVFNKFK 173 (590)
Q Consensus 99 ~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~iy~~~~~~~--~-~--~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~ 173 (590)
|.+++++|++||+||||||+|||++||+++|+++|++|.+.+ + . ...|+++|||+|||||||||+||||||++|+
T Consensus 307 P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~ 386 (800)
T PLN02592 307 PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFE 386 (800)
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhc
Confidence 578999999999999999999999999999999999885421 1 0 1369999999999999999999999999998
Q ss_pred cccccccccc---ccChHHHhhHhhhcccCCCCchHHHHHHHHHHHHHhhccC-CC------CChhHHHHHHHHhcCCcc
Q 047877 174 DHDGNFKESL---TSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAA-PN------LDQNLAKHINDALEQPLH 243 (590)
Q Consensus 174 d~~G~F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~-~~------~~~~l~~~V~~aL~~P~~ 243 (590)
+ +|+|++.+ .+|++|||+||||||+++|||+|||+|+.||++||++.+. ++ +.++|+++|+|||++|||
T Consensus 387 ~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~ 465 (800)
T PLN02592 387 K-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWY 465 (800)
T ss_pred C-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhh
Confidence 6 89999766 7999999999999999999999999999999999999753 11 357899999999999999
Q ss_pred CCchhhhHhhhHhhccCCCcC-------------CHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCchhhhHH
Q 047877 244 MGVPRIEAHKFISFYEHDDSK-------------NDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRT 310 (590)
Q Consensus 244 ~~~~rlear~yI~~y~~~~~~-------------n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ 310 (590)
+++||+|||+||++|++++++ |++||||||+|||+||++||+||++++|||+++||. +|||||||+
T Consensus 466 ~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~-~L~faRdr~ 544 (800)
T PLN02592 466 ASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLG-EFGVSRSEL 544 (800)
T ss_pred cCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCC-cCCcchhHH
Confidence 999999999999999987764 999999999999999999999999999999999995 999999999
Q ss_pred HHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhh--------hcCcccccCCCC------
Q 047877 311 VEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVE--------RWDINCVSELPE------ 376 (590)
Q Consensus 311 ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~ave--------rWD~~~~~~lPe------ 376 (590)
+|||||++|++|||+||.+|+++||.+++++++||+||+|||+||+++||++|+ |||.+.+++||+
T Consensus 545 ve~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~ 624 (800)
T PLN02592 545 LLAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVK 624 (800)
T ss_pred HHHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchh
Confidence 999999999999999999999999999999999999999999999999999996 999999999988
Q ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHH
Q 047877 377 YMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYI 456 (590)
Q Consensus 377 ymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~ 456 (590)
|||+||.+|++|+||++.++.+.+|.++.+|++++|.++|+ +|..+|+ +|+|+..+++++++
T Consensus 625 ~mki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~~~ 686 (800)
T PLN02592 625 TGEELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKTIN 686 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHHHH
Confidence 99999999999999999888776666899999999999998 6777665 45567767777777
Q ss_pred -hcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccC-CCHHHHHHHHHHHHHHHHHH
Q 047877 457 -GLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYG-TSGEETAEEFKKMIADGWKD 534 (590)
Q Consensus 457 -~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g-~S~EeA~~~i~~mi~~~wk~ 534 (590)
.+|..+|+|+++ +|++.++++.+.||+||++|+++|... .| +|+ +|.+++.+.|+.++++
T Consensus 687 l~~g~~lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~-------------~~~~~~-~a~~~~~~~ie~~~~e 748 (800)
T PLN02592 687 LTAGRSLSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH-------------INTYNP-EEKSKTTPSIESDMQE 748 (800)
T ss_pred HhcCCCCCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------------CCcccH-HHHHHHHHHHHHHHHH
Confidence 569999999876 699999999999999999999998841 23 445 8999999999999999
Q ss_pred HHHHhcC-C-CCCCHhHHHHHHHHhhhhchhcccCCCCCCchhHHHHHHHHhccccC
Q 047877 535 INEECMR-P-TIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEYLKDHVTKLFIDPIL 589 (590)
Q Consensus 535 ln~e~l~-~-~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~~k~~i~~ll~~pi~ 589 (590)
|.+.+++ . +.+|++|++.|||++| +||.. ||+.|..|++||+.+|++||+
T Consensus 749 L~~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~--~~~~~~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 749 LVQLVLQNSSDDIDPVIKQTFLMVAK---SFYYA--AYCDPGTINYHIAKVLFERVA 800 (800)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHH---HHHHh--hcCCHHHHHHHHHHHhCCCCC
Confidence 9999997 3 5699999999999999 45655 999997899999999999985
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=1.2e-55 Score=425.99 Aligned_cols=173 Identities=53% Similarity=0.831 Sum_probs=147.3
Q ss_pred CCCCCcCC-Cc-c------hhhhHHHHHHHHHHHHHHHHhhcCCCcccchhHhHHHhhhCcccccHHHHHHHHHHHHhhC
Q 047877 65 WKDGSISS-PV-L------EVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQ 136 (590)
Q Consensus 65 W~~~fl~~-~~-~------~~~~~~~~~e~lk~~vr~~l~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~iy~~~ 136 (590)
|||+||++ ++ . ..+.+.+++++||++||.||.....|+.++|+|||+||||||+||||+||+++|+++|+.|
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~ 80 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW 80 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence 99999943 21 1 2578999999999999999986445899999999999999999999999999999999988
Q ss_pred CccccCCCCChhhHHHHHHHhhhcCccccccccccccccccccccccccChHHHhhHhhhcccCCCCchHHHHHHHHHHH
Q 047877 137 PDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTA 216 (590)
Q Consensus 137 ~~~~~~~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~ 216 (590)
.+... ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||++++||+|||||+.||++
T Consensus 81 ~~~~~-~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~ 159 (183)
T PF01397_consen 81 DEDNE-EIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTK 159 (183)
T ss_dssp TTTSH-TSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHH
T ss_pred ccccc-ccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 54211 23499999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCC-CC-ChhHHHHHHHHh
Q 047877 217 HLKSMAAP-NL-DQNLAKHINDAL 238 (590)
Q Consensus 217 ~L~~~~~~-~~-~~~l~~~V~~aL 238 (590)
||++.+++ .. +++|+++|+|||
T Consensus 160 ~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 160 HLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHhccCCCCcHHHHHHHHHhC
Confidence 99999873 12 235999999998
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=1.4e-48 Score=397.19 Aligned_cols=269 Identities=31% Similarity=0.434 Sum_probs=248.5
Q ss_pred HHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhc
Q 047877 268 LLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTY 347 (590)
Q Consensus 268 lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~f 347 (590)
+|+|||+|||+||+.||+|++++++||+++|+..+.+.+|+|++.++|+.++++++|+.+..|+++||+++|+|++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999667777899999999999999999996677779999999999999999
Q ss_pred ccCCCHHHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHHHHHHh
Q 047877 348 DAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEE-GRSYSVSFTKDMMKGVVRAYFVEAQWF 426 (590)
Q Consensus 348 D~ygt~eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~-~~~~~~~~~~~~w~~~~~a~l~EAkW~ 426 (590)
|.+|+.++++.|+++++||++.....+|+++++++.++.++++++...+.+. ++..+..+++++|.+|++++++|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887777899999999999999999998777664 222356789999999999999999999
Q ss_pred hCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchh
Q 047877 427 REGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVV 506 (590)
Q Consensus 427 ~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V 506 (590)
..|++||++||+++|+.|+|+++++.++++++|..++++..+++..+|.+.++++.+++|+|||.|++||+++|+.+|+|
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~v 240 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNLV 240 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccHH
Confidence 99999999999999999999999999999999877777777777777889999999999999999999999999999999
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 047877 507 ESYMKEYGTSGEETAEEFKKMIADGWKDIN 536 (590)
Q Consensus 507 ~cyMke~g~S~EeA~~~i~~mi~~~wk~ln 536 (590)
.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 241 ~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 241 VVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=5.6e-46 Score=380.71 Aligned_cols=283 Identities=48% Similarity=0.851 Sum_probs=266.0
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Q 047877 282 LHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTD 361 (590)
Q Consensus 282 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 361 (590)
.||+|++++++||+++||....+++|.+...+|+|+++++++|+.+..|+++||+++|+|++||+||.+|+.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 49999999999999999976666999999999999999999999899999999999999999999999999999999999
Q ss_pred hhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhc
Q 047877 362 AVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNA 441 (590)
Q Consensus 362 averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~ 441 (590)
+++||+....+.+|+++++++.++.++++++...+.++++.....++++.|.+++.++.+||+|+..|++||++||+.+|
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R 160 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENR 160 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhc
Confidence 99999988888999999999999999999999888887776789999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHHHHH
Q 047877 442 IVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETA 521 (590)
Q Consensus 442 ~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~ 521 (590)
+.|+|+++++.++++++|..+|++.+.+.+...++++.++.+++|+||++||+||+.+|+.+|+|.|||+++|+|.++|+
T Consensus 161 ~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~eA~ 240 (284)
T cd00868 161 RVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEEAL 240 (284)
T ss_pred eehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHHHH
Confidence 99999999999999999999998555555888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCCHhHHHHHHHHhhhhchhc
Q 047877 522 EEFKKMIADGWKDINEECMRP-TIVPMRLLNVIVNIARLVEVFY 564 (590)
Q Consensus 522 ~~i~~mi~~~wk~ln~e~l~~-~~~p~~~~~~~~N~aR~~~~~Y 564 (590)
+++.++++++|+++++.+.+. ++.++.+++.+.|.+|.....|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 241 EELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 999999999999999999863 4678999999999999877654
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=4.2e-34 Score=297.16 Aligned_cols=251 Identities=15% Similarity=0.070 Sum_probs=218.9
Q ss_pred hHHHHHH-HHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhH-HHHHHHHHHHHhhhhcccC-CCHHHHHHH
Q 047877 283 HQQELAY-ITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRI-IFTKIYLLLLIIDDTYDAY-GTFGELQRF 359 (590)
Q Consensus 283 hq~El~~-lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri-~laK~~~l~~viDD~fD~y-gt~eEl~~f 359 (590)
|-.+++. ...|.++.|+. .-+.+|+++.+++|+.++.++.|+++.+|+ ++|+++.|+|++||+||.. +++++...+
T Consensus 11 ~~~~~~~~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~ 89 (303)
T cd00687 11 YVKEAQDEYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAG 89 (303)
T ss_pred ChHHHHHHHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHH
Confidence 4445555 45699999774 345799999999999888899999999999 7779999999999999987 499999999
Q ss_pred HHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhh
Q 047877 360 TDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMS 439 (590)
Q Consensus 360 t~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~ 439 (590)
++.+.++.......-|....++..++.+++.++..... .....++++.|.+++.|+++|++|+.+|++||++||++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~r~~~~~~----~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~ 165 (303)
T cd00687 90 VTRLLDILRGDGLDSPDDATPLEFGLADLWRRTLARMS----AEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLE 165 (303)
T ss_pred HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 99888874432211157788999999999999865432 23478999999999999999999999999999999999
Q ss_pred hcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhh-hcCCccchhhhhhhccCCCHH
Q 047877 440 NAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQ-ERGHVASVVESYMKEYGTSGE 518 (590)
Q Consensus 440 ~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~-~rG~~~n~V~cyMke~g~S~E 518 (590)
+|+.|+|+++++.++++++|..+|+++.+. +...++.++++.+++|+|||+||+||+ +.|+.+|+|.|+|+++|+|.|
T Consensus 166 ~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~ 244 (303)
T cd00687 166 MRRFNIGADPCLGLSEFIGGPEVPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLE 244 (303)
T ss_pred HhhhcccccccHHHHHHhcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHH
Confidence 999999999999999999999999988775 455679999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047877 519 ETAEEFKKMIADGWKDINEEC 539 (590)
Q Consensus 519 eA~~~i~~mi~~~wk~ln~e~ 539 (590)
+|++++.++++++++++.+..
T Consensus 245 eA~~~~~~~~~~~~~~f~~~~ 265 (303)
T cd00687 245 EAISVVRDMHNERITQFEELE 265 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987754
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.97 E-value=6.1e-31 Score=228.81 Aligned_cols=94 Identities=43% Similarity=0.654 Sum_probs=91.1
Q ss_pred hhcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhhhhchh-cccCCCCCCchh
Q 047877 497 QERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVF-YKKMDGVTNPEY 575 (590)
Q Consensus 497 ~~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~e~l~~~~~p~~~~~~~~N~aR~~~~~-Y~~~Dg~t~~~~ 575 (590)
++|||++|+|+|||||||+|+|||++++++||+++||++|+|+|+++++|.+++++++|+||+++|+ |++|||||.++.
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~ 80 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHG 80 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999 999999998876
Q ss_pred -HHHHHHHHhccccCC
Q 047877 576 -LKDHVTKLFIDPILV 590 (590)
Q Consensus 576 -~k~~i~~ll~~pi~i 590 (590)
+|++|++||++||+|
T Consensus 81 ~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 81 KLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHhccCCCC
Confidence 999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.84 E-value=8.3e-21 Score=185.91 Aligned_cols=229 Identities=28% Similarity=0.343 Sum_probs=184.5
Q ss_pred hhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHH
Q 047877 316 WSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNE 395 (590)
Q Consensus 316 w~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~ 395 (590)
+.++.++.|+++..|..++++.+|++++||++|..++..+.......+. ....|..+......+.+.+.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVA------IDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHH------hcCchHHHHHHHHHHHHHHHHHHhC
Confidence 4566778898889999999999999999999998887666655544331 2345667777788888888887543
Q ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhH
Q 047877 396 LAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPK 475 (590)
Q Consensus 396 ~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~ 475 (590)
.. .....++.+.|.+++.|+.+|+.|+.. .+||++||+.++..++ +.++......+++...++ .++.....+
T Consensus 76 ~~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 147 (243)
T cd00385 76 GS----PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLVGALCLLGAGLSGGE--AELLEALRK 147 (243)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 22 245888999999999999999999876 8899999999999998 555666666776666665 334455678
Q ss_pred HHHHHhhhhhhhcCcccchhhhhcC-CccchhhhhhhccCC------------CHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047877 476 IMTASFTLSRLIADLVSNKAEQERG-HVASVVESYMKEYGT------------SGEETAEEFKKMIADGWKDINEECMRP 542 (590)
Q Consensus 476 i~~~~~~i~RL~NDI~S~kkE~~rG-~~~n~V~cyMke~g~------------S~EeA~~~i~~mi~~~wk~ln~e~l~~ 542 (590)
+....+.+++|.||+.|+.+|.++| ..+|++.++|+++|+ +.++|.+++..+++++|+++++.....
T Consensus 148 ~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
T cd00385 148 LGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSL 227 (243)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 8999999999999999999999996 668999999999998 889999999999999999999877653
Q ss_pred CCCCHhHHHHHHHHhh
Q 047877 543 TIVPMRLLNVIVNIAR 558 (590)
Q Consensus 543 ~~~p~~~~~~~~N~aR 558 (590)
...+..+++.+.++.|
T Consensus 228 ~~~~~~~~~~~~~~~~ 243 (243)
T cd00385 228 PDVPRALLALALNLYR 243 (243)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3456777777777653
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.69 E-value=0.00042 Score=73.90 Aligned_cols=194 Identities=12% Similarity=0.102 Sum_probs=114.1
Q ss_pred CCCCcch-hHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCC
Q 047877 323 EPHFSRG-RIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGR 401 (590)
Q Consensus 323 eP~~s~~-Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~ 401 (590)
.|..+.. ++.+|-+.++++++||.++.. .+++..|-+-+-. ..+ ++. +++.++.+.+.++- +.=+
T Consensus 78 y~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq~----Q~~--p~L~~~~~~L~~~~----~~fg 143 (376)
T PF06330_consen 78 YPHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQP----QKH--PLLDGFASLLREMW----RHFG 143 (376)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T-------SS--HHHHHHHHHHHHHH----TTS-
T ss_pred cCCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CCC----CCC--HHHHHHHHHHHHHH----HHcc
Confidence 4666654 458899999999999998765 4666666654433 111 111 44555555554443 2223
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhH---HHH
Q 047877 402 SYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPK---IMT 478 (590)
Q Consensus 402 ~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~---i~~ 478 (590)
+.+-.-+.++--+++.+...|.+.. +-.|.-..|-..-|.=+|+..+.+...+ =...-|+. ..... .+-
T Consensus 144 pf~anmI~~STLdFi~g~~LE~~~f--~~~p~A~~FP~fLR~ktGlsEaYA~FiF-Pk~~fpe~-----~~~~~y~~AIp 215 (376)
T PF06330_consen 144 PFCANMIVKSTLDFINGCWLEQKNF--HGSPGAPDFPDFLRRKTGLSEAYAFFIF-PKALFPEV-----EYFIQYTPAIP 215 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT---TTTS-TT-----TTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccC--CCCCCCccccHHHHhccCcchhheeeec-ccccCChH-----HHHHHHHHHHH
Confidence 3455667788889999999998653 2235444555555555666666554333 12222321 11223 233
Q ss_pred HHhhhhhhhcCcccchhhhh-cCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047877 479 ASFTLSRLIADLVSNKAEQE-RGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEE 538 (590)
Q Consensus 479 ~~~~i~RL~NDI~S~kkE~~-rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~e 538 (590)
-....+-++|||.||=||.- .|+..|.|.-+-.-+|+|.-+|.+.+.+-.-++-+++.+-
T Consensus 216 dl~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~v 276 (376)
T PF06330_consen 216 DLMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRRV 276 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445569999999999977 7888999977777789999999998877666666665544
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.64 E-value=0.00089 Score=70.44 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=120.3
Q ss_pred CCcchhH-HHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCc
Q 047877 325 HFSRGRI-IFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSY 403 (590)
Q Consensus 325 ~~s~~Ri-~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~ 403 (590)
..|..=+ .++-..+.++++||.-|.. .+.+..|.+-+.. ..+- +. +++..+.+.+..+-.-. |++
T Consensus 80 ~~skev~~~isi~~tY~~~lDD~~~e~--~~~m~~f~~dL~~--G~~q----kh--P~l~~v~~~l~~~lr~f----GpF 145 (357)
T cd00686 80 KVSKECMADLSIHYTYTLVLDDSKDDP--YPTMVNYFDDLQA--GREQ----AH--PWWALVNEHFPNVLRHF----GPF 145 (357)
T ss_pred CCCHHHHHHHHHHHheeeEeccccccc--chHHHHHHHHHhc--CCCC----CC--cHHHHHHHHHHHHHHHh----hhh
Confidence 3566544 6677778889999997754 3356666655443 1111 11 33333333333332211 334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHh--
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASF-- 481 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~-- 481 (590)
+-.-+.++--+++.+.+-|... .+.-|.-.+|-...|.=+|.+-+.+...+ |++.+.-...+..+..+..
T Consensus 146 ~s~~IikSTLdFv~g~~iEq~n--f~~~p~A~~fP~ylR~ksGl~E~yA~FiF------Pk~~FpE~~~~~qi~~AIp~~ 217 (357)
T cd00686 146 CSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGASLW------PKEQFNERSLFLEITSAIAQM 217 (357)
T ss_pred hHHHHHHHHHHHHHHHHHhhhc--cCCCCCCcccchHHHhccCCcceeEEEec------chhhCchHhhHHHhhHHHHHH
Confidence 4445667778899999999664 34467777777777776776655543322 4433322222233333333
Q ss_pred -hhhhhhcCcccchhhhhc-CCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047877 482 -TLSRLIADLVSNKAEQER-GHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRP 542 (590)
Q Consensus 482 -~i~RL~NDI~S~kkE~~r-G~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~e~l~~ 542 (590)
..+-++|||.||=||--. ++-.|.|.-|-+.+|+|..+|.+.+.+-.-.+-+++.+ .|.+
T Consensus 218 ~~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~-VLse 279 (357)
T cd00686 218 ENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVA-VFSD 279 (357)
T ss_pred HHHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 344588999999999854 45578888888889999999999887777777767644 4543
No 12
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=88.84 E-value=8.8 Score=39.13 Aligned_cols=185 Identities=16% Similarity=0.163 Sum_probs=100.4
Q ss_pred cchhHHHHHHHHHHHHhhhhcccCCCHHH----HHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCC
Q 047877 327 SRGRIIFTKIYLLLLIIDDTYDAYGTFGE----LQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRS 402 (590)
Q Consensus 327 s~~Ri~laK~~~l~~viDD~fD~ygt~eE----l~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~ 402 (590)
...|-.+.-+-.+.-.+||+-|......+ ++-+-+++...-.+..+..+....++..++..+....
T Consensus 17 ~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~~~~~---------- 86 (267)
T PF00494_consen 17 KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADLVRRY---------- 86 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHHHCCS----------
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHHHHHH----------
Confidence 45666667888888999999997664332 4444444444321111233445556776666653211
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhh
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFT 482 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~ 482 (590)
..-++.+.++++|+.+... ...++|++|+......+.|....+++-.++..... .+..+. ....+.
T Consensus 87 ---~l~~~~l~~li~~~~~dl~---~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~~~-~~~~~~-------a~~lG~ 152 (267)
T PF00494_consen 87 ---GLPREPLLELIDGMEMDLE---FTPYETFADLERYCYYVAGSVGLLLLQLLGAHDPD-EAARDA-------ARALGR 152 (267)
T ss_dssp ---HHHHHHHHHHHHHHHHCTT----S--SSHHHHHHHHHHHTHHHHHHHHHHHHSSTSH-HHHHHH-------HHHHHH
T ss_pred ---hhhHHHHHHHHHHhccccc---CCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccch-hhHHHH-------HHHHHH
Confidence 1245667778888754433 34578999999999888888777666656553211 122222 233333
Q ss_pred hhhhhcCcccchhh-hhcCCc--cchhhhhhhccCCCHHHHHHH----------HHHHHHHHHHHHHHH
Q 047877 483 LSRLIADLVSNKAE-QERGHV--ASVVESYMKEYGTSGEETAEE----------FKKMIADGWKDINEE 538 (590)
Q Consensus 483 i~RL~NDI~S~kkE-~~rG~~--~n~V~cyMke~g~S~EeA~~~----------i~~mi~~~wk~ln~e 538 (590)
.+-+.|=|...... ..+|-+ +. =.|.++|+|.++-... +..+++.+...+.+.
T Consensus 153 alql~nilRd~~~D~~~~gR~ylP~---d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a 218 (267)
T PF00494_consen 153 ALQLTNILRDIPEDALRRGRIYLPL---DDLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEA 218 (267)
T ss_dssp HHHHHHHHHTHHHH-HHTT---S-H---HHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhcccccCCc---hhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444 455643 32 2467889988765432 455555555555443
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=87.73 E-value=6.5 Score=39.12 Aligned_cols=118 Identities=11% Similarity=0.092 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhccc-ccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhh
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIV-TGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFT 482 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~-Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~ 482 (590)
....+.+...+++.+...+..|... ..||.++|++.... |+++....+..-...+.. +++..+. ..++.+..+.
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~lG~ 160 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA-DDEQAEA---LKDYGRALGL 160 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc-CHHHHHH---HHHHHHHHHH
Confidence 3566778889999999999998654 57899999999887 666654433332222222 2222222 3467778888
Q ss_pred hhhhhcCcccchhhh----------hcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 483 LSRLIADLVSNKAEQ----------ERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 483 i~RL~NDI~S~kkE~----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
..-+.||+..+.... ++|.. +....++ .+.+.+..+.+++.+..
T Consensus 161 a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~ 214 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEA 214 (236)
T ss_pred HHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 889999998876644 45554 4444444 55566666666665543
No 14
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=83.47 E-value=27 Score=35.69 Aligned_cols=121 Identities=7% Similarity=-0.015 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhh
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFT 482 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~ 482 (590)
.....+.+.....+.+-..+..|... ..||.++|++....-+|.....+....++--..+++..+. ..++-+..+.
T Consensus 108 ~~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~---l~~~g~~lG~ 183 (259)
T cd00685 108 RALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAEA---LKRFGRNLGL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 34666778888899999989988654 5799999999987766665443322221101113333332 3467778888
Q ss_pred hhhhhcCcccchhhh-----------hcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 483 LSRLIADLVSNKAEQ-----------ERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 483 i~RL~NDI~S~kkE~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
..-+.||+..+.... ..|.. |...+|.. .+.+...++++++.+..
T Consensus 184 afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~-T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 184 AFQIQDDILDLFGDPETLGKPVGSDLREGKC-TLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHhhcccCChHHHCCCcchHHHcCCc-hHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 888899987765432 22332 44434333 45566666666666544
No 15
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=82.46 E-value=62 Score=33.18 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=97.6
Q ss_pred chhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcCc--cc-ccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCch
Q 047877 328 RGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDI--NC-VSELPEYMKPLYGALLNLFDELNNELAEEGRSYS 404 (590)
Q Consensus 328 ~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD~--~~-~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~ 404 (590)
..|-.++-+-.+.-.+||+-|..++.++-+.- +..|.. .. ...-|. .++..++..++... +. .
T Consensus 18 ~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~---L~~w~~~l~~~~~g~~~--~pv~~al~~~~~~~--------~l-~ 83 (266)
T TIGR03465 18 ERRRAMTALYAFCREVDDIVDEDSDPEVAQAK---LAWWRAEIDRLYAGAPS--HPVARALADPARRF--------DL-P 83 (266)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHH---HHHHHHHHHHHhCCCCC--ChHHHHHHHHHHHc--------CC-C
Confidence 45555667777888899999975544332222 223311 00 001122 25556665553322 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhh
Q 047877 405 VSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLS 484 (590)
Q Consensus 405 ~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~ 484 (590)
++.+.++++++.+... ...++|++|+......+.|.-..+++-.++.. ++....... .+-.+. -++
T Consensus 84 ----~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~vg~l~~~llg~~---~~~~~~~a~---~lG~Al-qlt 149 (266)
T TIGR03465 84 ----QEDFLEVIDGMEMDLE---QTRYPDFAELDLYCDRVAGAVGRLSARIFGAT---DARTLEYAH---HLGRAL-QLT 149 (266)
T ss_pred ----HHHHHHHHHHHHHHcC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC---ChhHHHHHH---HHHHHH-HHH
Confidence 3456777777754433 34578999988888777776655555444321 122222111 111111 133
Q ss_pred hhhcCcccchhhhhcCCccchhhhhhhccCCCHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 047877 485 RLIADLVSNKAEQERGHVASVVESYMKEYGTSGE---------ETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVN 555 (590)
Q Consensus 485 RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~E---------eA~~~i~~mi~~~wk~ln~e~l~~~~~p~~~~~~~~N 555 (590)
.++-|+. ...++|-+- +=.=-|.++|+|.+ ...+-+..+++.+..-+.+..--...+|......++-
T Consensus 150 nilRdv~---eD~~~gR~y-lP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~~~~~~~ 225 (266)
T TIGR03465 150 NILRDVG---EDARRGRIY-LPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAARA 225 (266)
T ss_pred HHHHHhH---HHHhCCCee-cCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhhhHHHHH
Confidence 3444553 334566531 10123567888866 3345566666666655554432223467544444333
Q ss_pred H
Q 047877 556 I 556 (590)
Q Consensus 556 ~ 556 (590)
.
T Consensus 226 ~ 226 (266)
T TIGR03465 226 M 226 (266)
T ss_pred H
Confidence 3
No 16
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=78.67 E-value=67 Score=32.81 Aligned_cols=195 Identities=15% Similarity=0.159 Sum_probs=99.7
Q ss_pred chhHHHHHHHHHHHHhhhhcccCCCH-H----HHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCC
Q 047877 328 RGRIIFTKIYLLLLIIDDTYDAYGTF-G----ELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRS 402 (590)
Q Consensus 328 ~~Ri~laK~~~l~~viDD~fD~ygt~-e----El~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~ 402 (590)
..|-.+.-+-.+.-.+||+-|..... . .|+-+-+++..-... .-|. .++..++..+..+. +.
T Consensus 24 ~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~---~~~~--~pv~~al~~~~~~~--------~l 90 (265)
T cd00683 24 ELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWG---GAPT--HPVLRALADLARRY--------GI 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcC---CCCC--ChHHHHHHHHHHHc--------CC
Confidence 45555666777778899999975532 2 233333333331110 1122 25666666654311 21
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhh
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFT 482 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~ 482 (590)
-++.+.++++++..... ....||++|.......+.|+-..+++-.++.+ -+++.... ....+.
T Consensus 91 -----~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~--~~~~~~~~-------A~~lG~ 153 (265)
T cd00683 91 -----PREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVFGAS--SDEAALER-------ARALGL 153 (265)
T ss_pred -----CHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC--CChHHHHH-------HHHHHH
Confidence 13557777888765544 45678998888887777776555554444321 12222221 222222
Q ss_pred ---hhhhhcCcccchhhhhcCCc--cchhhhhhhccCCCHHHH---------HHHHHHHHHHHHHHHHHHhcCCCCCCHh
Q 047877 483 ---LSRLIADLVSNKAEQERGHV--ASVVESYMKEYGTSGEET---------AEEFKKMIADGWKDINEECMRPTIVPMR 548 (590)
Q Consensus 483 ---i~RL~NDI~S~kkE~~rG~~--~n~V~cyMke~g~S~EeA---------~~~i~~mi~~~wk~ln~e~l~~~~~p~~ 548 (590)
++.++-|+. ...++|-+ +.- -|.++|+|.|+- ..-+..+++.+.+-+....-....+|..
T Consensus 154 AlqltnilRdv~---eD~~~gR~YlP~d---~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 227 (265)
T cd00683 154 ALQLTNILRDVG---EDARRGRIYLPRE---ELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRR 227 (265)
T ss_pred HHHHHHHHHHHH---HHHccCCCcCCHH---HHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHh
Confidence 333444554 23355542 221 266788887553 2445556666655554433222346755
Q ss_pred HHHHHHHHhh
Q 047877 549 LLNVIVNIAR 558 (590)
Q Consensus 549 ~~~~~~N~aR 558 (590)
..-.++-++.
T Consensus 228 ~~~~~~~~~~ 237 (265)
T cd00683 228 SRFCVRAAAM 237 (265)
T ss_pred hHHHHHHHHH
Confidence 5444444443
No 17
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=71.11 E-value=1.3e+02 Score=30.90 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=65.0
Q ss_pred HHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccC-CCHHH----HHHHHHhhhhcCcccccCCCCchHHHHHHHHH
Q 047877 313 IYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAY-GTFGE----LQRFTDAVERWDINCVSELPEYMKPLYGALLN 387 (590)
Q Consensus 313 ~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~y-gt~eE----l~~ft~averWD~~~~~~lPeymk~~~~al~~ 387 (590)
+|+|+.-.. | ...|..+.-+-.+.=++||+-|.. ++.++ |+.+-+.++.- ...-|. .++..++..
T Consensus 7 sf~~a~~~l--p--~~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~----~~g~~~--~pv~~aL~~ 76 (266)
T TIGR03464 7 NFPVASLLL--P--ARLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAI----YSGEPA--APVFVALAR 76 (266)
T ss_pred cHHHHHHhC--C--HHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHH----hCCCCC--ChHHHHHHH
Confidence 344444433 3 244555566777778899999975 44443 22233332221 111121 256667766
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHh
Q 047877 388 LFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIG 457 (590)
Q Consensus 388 t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~ 457 (590)
++.+. +. . ++.+.+++.++... ......+|++|.......++|+-..+++-.++
T Consensus 77 ~~~~~--------~l-~----~~~~~~li~~~~~D---l~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g 130 (266)
T TIGR03464 77 TVQRH--------GL-P----IEPFLDLLDAFRQD---VVVTRYATWAELLDYCRYSANPVGRLVLDLYG 130 (266)
T ss_pred HHHHc--------CC-C----hHHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 65432 21 1 24455666666432 23345679999888888877776666555444
No 18
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=66.28 E-value=1.4e+02 Score=31.79 Aligned_cols=88 Identities=2% Similarity=-0.068 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhh
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFT 482 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~ 482 (590)
.....+.+...+++.+-+.+..|... .-+|.++|++.-..=+|.....+...-++--..+++..+. .-++-+..++
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~~-~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~---l~~~G~~lG~ 208 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQFD-SDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVAND---LYEYGKHLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHH---HHHHHHHHHH
Confidence 34666777888889988888777543 3479999998755544444322211111111234544443 3467778888
Q ss_pred hhhhhcCcccch
Q 047877 483 LSRLIADLVSNK 494 (590)
Q Consensus 483 i~RL~NDI~S~k 494 (590)
..-+.||+..+.
T Consensus 209 aFQi~DDild~~ 220 (322)
T TIGR02749 209 AFQVVDDILDFT 220 (322)
T ss_pred HHHHHHHhccCC
Confidence 999999998865
No 19
>PLN02890 geranyl diphosphate synthase
Probab=61.15 E-value=1.4e+02 Score=33.10 Aligned_cols=89 Identities=11% Similarity=0.004 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhh
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFT 482 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~ 482 (590)
..+..+.++...++.+-+.+..|..+ ..+|+++|++....-+|.....+...-++=-..+++..+.+ -++-+..++
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~~-~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l---~~fG~~lGl 302 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSRE-QRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLA---FEYGRNLGL 302 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHHHH
Confidence 35677888899999999999998753 45899999987555444443322211111112355555443 467788888
Q ss_pred hhhhhcCcccchh
Q 047877 483 LSRLIADLVSNKA 495 (590)
Q Consensus 483 i~RL~NDI~S~kk 495 (590)
..-+.|||..+.-
T Consensus 303 AFQI~DDiLD~~g 315 (422)
T PLN02890 303 AFQLIDDVLDFTG 315 (422)
T ss_pred HHHHHHHHHhhcC
Confidence 8889999988754
No 20
>PLN02857 octaprenyl-diphosphate synthase
Probab=60.45 E-value=70 Score=35.47 Aligned_cols=88 Identities=7% Similarity=0.006 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhh
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTL 483 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i 483 (590)
....+.+...+++.+-+.+..+.. +.-+|.++|++....=+|.........-++=-..+++..+. ..++-+..++.
T Consensus 228 ~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~---l~~fG~~LGiA 303 (416)
T PLN02857 228 VIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQ---MYEYGKNLGLA 303 (416)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHH
Confidence 456677778888888877887764 34579999999765555444332221111111234544443 34677778888
Q ss_pred hhhhcCcccchh
Q 047877 484 SRLIADLVSNKA 495 (590)
Q Consensus 484 ~RL~NDI~S~kk 495 (590)
.-+.||+..+..
T Consensus 304 FQI~DDiLD~~~ 315 (416)
T PLN02857 304 FQVVDDILDFTQ 315 (416)
T ss_pred HHHHHHHHhhcC
Confidence 889999988753
No 21
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=53.85 E-value=1.8e+02 Score=30.95 Aligned_cols=106 Identities=11% Similarity=0.099 Sum_probs=69.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHH--HhcCCCcchhHHHhhhchhHHHHHH
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAY--IGLGDIAGIDAYEWLRSQPKIMTAS 480 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~i~~~~ 480 (590)
.....+.+....++.+-+.+..+.... +|.++|+.+-..=+|.....+... +..|. +++..+.+ -.+-+..
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~--~~~~~~~l---~~~g~~l 206 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAGA--DEELLEAL---EDYGRNL 206 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHH---HHHHHHh
Confidence 356677888999999999888887655 999999998665555443332222 12232 34555543 5677888
Q ss_pred hhhhhhhcCcccchhh-hhcCCc---------cchhhhhhhccCC
Q 047877 481 FTLSRLIADLVSNKAE-QERGHV---------ASVVESYMKEYGT 515 (590)
Q Consensus 481 ~~i~RL~NDI~S~kkE-~~rG~~---------~n~V~cyMke~g~ 515 (590)
++..-+.|||..+.-+ ..-|+. .++..+|.-+.+.
T Consensus 207 GlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~ 251 (322)
T COG0142 207 GLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKAN 251 (322)
T ss_pred hHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCc
Confidence 8899999999888764 223332 3566566655443
No 22
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=51.30 E-value=2.5e+02 Score=29.71 Aligned_cols=86 Identities=6% Similarity=-0.070 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhc--CCCcchhHHHhhhchhHHHHHHh
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGL--GDIAGIDAYEWLRSQPKIMTASF 481 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~--g~~l~~e~~e~~~~~p~i~~~~~ 481 (590)
....+.++...++.+-..+..|.. +.-+|.++|++.-..-+|.....+. ..|. + ..+++..+. .-++-+..+
T Consensus 130 ~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~~-~~ga~~a-g~~~~~~~~---l~~~g~~lG 203 (319)
T TIGR02748 130 AHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAASC-QLGAIAS-GANEAIVKK---LYWFGYYVG 203 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 456677888889999888888853 3457999999886665555433221 1211 1 123433333 246677788
Q ss_pred hhhhhhcCcccchh
Q 047877 482 TLSRLIADLVSNKA 495 (590)
Q Consensus 482 ~i~RL~NDI~S~kk 495 (590)
+..-+.||+..+..
T Consensus 204 ~aFQI~DDilD~~~ 217 (319)
T TIGR02748 204 MSYQITDDILDFVG 217 (319)
T ss_pred HHHHHHHHHHHccC
Confidence 88899999977643
No 23
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=49.66 E-value=12 Score=35.77 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=25.3
Q ss_pred hcCCccchhhhhhhcc-CCCHHHHHHHHHHH
Q 047877 498 ERGHVASVVESYMKEY-GTSGEETAEEFKKM 527 (590)
Q Consensus 498 ~rG~~~n~V~cyMke~-g~S~EeA~~~i~~m 527 (590)
.||-.+..|.||+-++ +.|.|+|.++++++
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~i 149 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRKI 149 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHhc
Confidence 4566678999998875 99999999999983
No 24
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=48.02 E-value=3.8e+02 Score=28.81 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=79.0
Q ss_pred CCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhh
Q 047877 429 GYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVES 508 (590)
Q Consensus 429 g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~c 508 (590)
+..|.++=| +.+..|++.-.++++.-++....++++..+.+.. .-.=..+-+-.|++=....+.+.+.|+. |.|..
T Consensus 174 ~~~p~l~W~-EfaAatGSTLgIF~L~a~A~~p~~t~~~a~~i~~--aYFPwI~gLHILLDy~IDq~EDr~~GdL-NFv~Y 249 (330)
T PF10776_consen 174 DKYPELEWW-EFAAATGSTLGIFALFAYAADPDLTPEDAEKIKD--AYFPWICGLHILLDYFIDQEEDREGGDL-NFVFY 249 (330)
T ss_pred hcCCCccHH-HHHHHhccHHHHHHHHHHHcCCCCCHHHHHHHHH--cccHHHHHHHHHHHHHhhhHhHhcCCCc-eeeee
Confidence 345644322 3333333333344444466677888887776532 2222344455566666666666677776 99975
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhhhhchhcccCCCCCCchhHHHHHHHHh
Q 047877 509 YMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEYLKDHVTKLF 584 (590)
Q Consensus 509 yMke~g~S~EeA~~~i~~mi~~~wk~ln~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~~k~~i~~ll 584 (590)
|- +.+++.+.+.-.++++-+...+ +|.+--...++=+ +--||-.++.=..+..++..-+.|+
T Consensus 250 Y~-----~~~~~~~Rl~~f~~~A~~~~~~-------Lp~~~fHr~iv~G--Lla~YLSD~K~~~~~~~~~~ak~Ll 311 (330)
T PF10776_consen 250 YP-----DEEEMEERLKYFVEKALEQASR-------LPYPKFHRMIVRG--LLAMYLSDPKVRSQPNVRPVAKRLL 311 (330)
T ss_pred CC-----CHHHHHHHHHHHHHHHHHHHHh-------CCCchHHHHHHHH--HHHHHhCCHhhccchhhHHHHHHHH
Confidence 54 5789999999999999887655 5554444444433 3346866544332222344444443
No 25
>PLN02632 phytoene synthase
Probab=42.88 E-value=4.5e+02 Score=28.11 Aligned_cols=192 Identities=15% Similarity=0.134 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHHHhhhhcccCCCH----HHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCch
Q 047877 329 GRIIFTKIYLLLLIIDDTYDAYGTF----GELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYS 404 (590)
Q Consensus 329 ~Ri~laK~~~l~~viDD~fD~ygt~----eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~ 404 (590)
.|..+.-+-.|.-.+||+-|..... ..|+..-+.++.- ...-|.. ++..++.++..+. +. .
T Consensus 74 ~R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~----~~g~~~~--pv~~aL~~~~~~~--------~L-~ 138 (334)
T PLN02632 74 RRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDL----FDGRPYD--MLDAALADTVSKF--------PL-D 138 (334)
T ss_pred HHHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHH----hCCCCCC--hHHHHHHHHHHHC--------CC-C
Confidence 4555566777788899999965432 2233333333221 1111221 4566666664432 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcc---hhHHHhhhchhHHHHHHh
Q 047877 405 VSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAG---IDAYEWLRSQPKIMTASF 481 (590)
Q Consensus 405 ~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~---~e~~e~~~~~p~i~~~~~ 481 (590)
++.+.+++.++..... ....+|++|+......+.|+--.+++..++.....+ ++..... ..+-.+.
T Consensus 139 ----~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~~~~~~~~~A---~~lG~Al- 207 (334)
T PLN02632 139 ----IQPFRDMIEGMRMDLV---KSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYNAA---LALGIAN- 207 (334)
T ss_pred ----hHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCccccchHHHHHHH---HHHHHHH-
Confidence 3445677777754332 345679998888877777766555554444322111 1111111 0111111
Q ss_pred hhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHHHH---------HHHHHHHHHHHHHHHHHHhcCCCCCCHhHH
Q 047877 482 TLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEET---------AEEFKKMIADGWKDINEECMRPTIVPMRLL 550 (590)
Q Consensus 482 ~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA---------~~~i~~mi~~~wk~ln~e~l~~~~~p~~~~ 550 (590)
-++.++-||. ...++|-+- +=.=.|.++|+|.++- ..-+..+++.+..-+.+..---..+|..+.
T Consensus 208 QltNILRDv~---eD~~~GRvY-LP~e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r 281 (334)
T PLN02632 208 QLTNILRDVG---EDARRGRVY-LPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASR 281 (334)
T ss_pred HHHHHHHHHH---HHHhCCcee-CCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhH
Confidence 1334445653 334666530 0011367889998772 334445555555444333211124676544
No 26
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=42.60 E-value=18 Score=35.68 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=30.0
Q ss_pred hhhhcCcccchhhhhcCC-ccchhhhhhhccCCCHHHHHHHHHHHHH
Q 047877 484 SRLIADLVSNKAEQERGH-VASVVESYMKEYGTSGEETAEEFKKMIA 529 (590)
Q Consensus 484 ~RL~NDI~S~kkE~~rG~-~~n~V~cyMke~g~S~EeA~~~i~~mi~ 529 (590)
-.|--++..+|+..+.-. +.-+=.+.|+++|+|++||.++++++-=
T Consensus 128 ~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM 174 (194)
T COG3707 128 RALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAM 174 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344455555555443322 2333346899999999999999998643
No 27
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=38.92 E-value=23 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=21.7
Q ss_pred ccchhhhhhhccCCCHHHHHHHHHHHHHH
Q 047877 502 VASVVESYMKEYGTSGEETAEEFKKMIAD 530 (590)
Q Consensus 502 ~~n~V~cyMke~g~S~EeA~~~i~~mi~~ 530 (590)
+.-++.+.|..+|+|+++|.+.+++.-.+
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~Am~ 43 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQAMR 43 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 44567789999999999999999885543
No 28
>CHL00151 preA prenyl transferase; Reviewed
Probab=35.14 E-value=5.7e+02 Score=27.09 Aligned_cols=85 Identities=6% Similarity=-0.085 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhc-ccccccchHHHHHH--HhcCCCcchhHHHhhhchhHHHHHH
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNA-IVTGTCFLDPAAAY--IGLGDIAGIDAYEWLRSQPKIMTAS 480 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~-~~Ssg~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~i~~~~ 480 (590)
....+.+....++.+-+.+..|.. ..-+|.++|+... ..|... ...+... +..| .+++..+. .-++-+..
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L-~~~~~~~ga~lag--~~~~~~~~---l~~~G~~l 207 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASL-IAASCKAAALLSD--ADEKDHND---FYLYGKHL 207 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHH-HHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 456677888888888877776643 3347999999974 444444 3222211 2223 34444333 34677788
Q ss_pred hhhhhhhcCcccchh
Q 047877 481 FTLSRLIADLVSNKA 495 (590)
Q Consensus 481 ~~i~RL~NDI~S~kk 495 (590)
++..-+.||+..+.-
T Consensus 208 G~aFQi~DDilD~~~ 222 (323)
T CHL00151 208 GLAFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHHHhhccc
Confidence 888999999988754
No 29
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.05 E-value=56 Score=33.77 Aligned_cols=182 Identities=20% Similarity=0.196 Sum_probs=97.1
Q ss_pred cccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhc---Cc--------ccccCCCCchHHHHHHHHHH
Q 047877 320 QYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERW---DI--------NCVSELPEYMKPLYGALLNL 388 (590)
Q Consensus 320 ~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averW---D~--------~~~~~lPeymk~~~~al~~t 388 (590)
-+|+|.|..+++ +.++.+|++++|-+=|- .+-+..+..-+.|- ++ ..++.|++..|+= +=.++
T Consensus 87 ~~Fd~s~D~e~i-F~~~gALifvIDaQddy---~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie--tqrdI 160 (347)
T KOG3887|consen 87 DFFDPSFDYEMI-FRGVGALIFVIDAQDDY---MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE--TQRDI 160 (347)
T ss_pred ccCCCccCHHHH-HhccCeEEEEEechHHH---HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhh--hHHHH
Confidence 468999999977 57999999999876442 33444444444442 22 4567788766532 11223
Q ss_pred HHHHHHHHHHcCC-----C-c----hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHH----
Q 047877 389 FDELNNELAEEGR-----S-Y----SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAA---- 454 (590)
Q Consensus 389 ~~ei~~~~~~~~~-----~-~----~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~---- 454 (590)
..+...++...|- + + .-+-.-+++.+.++... ..+||+|--|.+=..+|+..-.++.-
T Consensus 161 ~qr~~d~l~d~gle~v~vsf~LTSIyDHSIfEAFSkvVQkLi--------pqLptLEnlLnif~s~S~ieKafLFDv~SK 232 (347)
T KOG3887|consen 161 HQRTNDELADAGLEKVQVSFYLTSIYDHSIFEAFSKVVQKLI--------PQLPTLENLLNIFISNSKIEKAFLFDVLSK 232 (347)
T ss_pred HHHhhHHHHhhhhccceEEEEEeeecchHHHHHHHHHHHHHh--------hhchhHHHHHHHHhhccchhhhhhhhhhhe
Confidence 3333222222211 0 0 11122333433333322 45788888777766665543221100
Q ss_pred HHhcCCCcch----------------hHHHh-----hhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhcc
Q 047877 455 YIGLGDIAGI----------------DAYEW-----LRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEY 513 (590)
Q Consensus 455 ~~~~g~~l~~----------------e~~e~-----~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~ 513 (590)
.|...+.-|- ++..- -..-+..-+.++.+.||.|+..-|-+|..++- +.-|.|++.
T Consensus 233 IYiaTDS~PVdmq~YElC~d~IDV~iDl~~iYg~~~~~~~s~~d~~s~svirL~n~~vlyLrev~k~L---ALV~i~re~ 309 (347)
T KOG3887|consen 233 IYIATDSSPVDMQSYELCCDMIDVTIDLSSIYGLKEDGKGSDYDKESSSVIRLNNTTVLYLREVNKFL---ALVCIVRED 309 (347)
T ss_pred eEEecCCCcchhHHHHHHHhhhheeeehHHhhCCCCCCCCCchhhhhhhhhhhcCceEEeHHHhhhhe---EEEEEEccC
Confidence 0001111111 00000 01124556667789999999999999998764 345999998
Q ss_pred CCCHH
Q 047877 514 GTSGE 518 (590)
Q Consensus 514 g~S~E 518 (590)
|...+
T Consensus 310 ~~e~~ 314 (347)
T KOG3887|consen 310 GFEKK 314 (347)
T ss_pred Ccccc
Confidence 87544
No 30
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=28.83 E-value=39 Score=23.01 Aligned_cols=18 Identities=50% Similarity=0.661 Sum_probs=14.3
Q ss_pred hhhhccCCCHHHHHHHHH
Q 047877 508 SYMKEYGTSGEETAEEFK 525 (590)
Q Consensus 508 cyMke~g~S~EeA~~~i~ 525 (590)
-|.++||+|.||..+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 489999999999666554
No 31
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=28.47 E-value=54 Score=31.37 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=23.4
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHh
Q 047877 509 YMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMR 548 (590)
Q Consensus 509 yMke~g~S~EeA~~~i~~mi~~~wk~ln~e~l~~~~~p~~ 548 (590)
-|++.|.|..+ |++.|++.||+ .+.+|++-|+|
T Consensus 126 ~~~~~Gks~~e----IR~~ID~kYk~---g~~~pTpTp~P 158 (158)
T PF13798_consen 126 QMYQEGKSPKE----IRQYIDEKYKE---GYAKPTPTPMP 158 (158)
T ss_pred HHHHcCCCHHH----HHHHHHHHHHh---CCCCCCCCCCC
Confidence 35566766544 99999999974 47777776654
No 32
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=26.87 E-value=7.9e+02 Score=26.11 Aligned_cols=88 Identities=10% Similarity=-0.064 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhc-CCCcchhHHHhhhchhHHHHHHh
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGL-GDIAGIDAYEWLRSQPKIMTASF 481 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~-g~~l~~e~~e~~~~~p~i~~~~~ 481 (590)
.....+.++...++.+-..+..|... .-+|.++|+.....-+|.....+. ..|. =-..+++..+. .-++-+..+
T Consensus 130 ~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~i~~KTa~lf~~~~-~~ga~lag~~~~~~~~---l~~~g~~lG 204 (323)
T PRK10888 130 KVLEVMSEAVNVIAEGEVLQLMNVND-PDITEENYMRVIYSKTARLFEAAA-QCSGILAGCTPEQEKG---LQDYGRYLG 204 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHH
Confidence 34566778888889988888887543 357999999986665555433222 2221 01224443333 346777888
Q ss_pred hhhhhhcCcccchh
Q 047877 482 TLSRLIADLVSNKA 495 (590)
Q Consensus 482 ~i~RL~NDI~S~kk 495 (590)
+..-+.||+..+..
T Consensus 205 ~aFQi~DD~ld~~~ 218 (323)
T PRK10888 205 TAFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHHhhcccC
Confidence 88889999988753
No 33
>PF14164 YqzH: YqzH-like protein
Probab=25.01 E-value=35 Score=27.76 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=16.8
Q ss_pred HHHHHhhhcCccccccccccc
Q 047877 152 ILFRVFRQHGFNVSSGVFNKF 172 (590)
Q Consensus 152 l~FRLLR~~Gy~vS~Dvf~~F 172 (590)
|.=+-|||+||+++++.+...
T Consensus 9 mi~~~l~QYg~d~~~~pls~~ 29 (64)
T PF14164_consen 9 MIINCLRQYGYDVECMPLSDE 29 (64)
T ss_pred HHHHHHHHhCCcccCCCCCHH
Confidence 344679999999999988754
No 34
>smart00400 ZnF_CHCC zinc finger.
Probab=24.91 E-value=60 Score=25.00 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=20.6
Q ss_pred CCccchhhhhhhccCCCHHHHHHHH
Q 047877 500 GHVASVVESYMKEYGTSGEETAEEF 524 (590)
Q Consensus 500 G~~~n~V~cyMke~g~S~EeA~~~i 524 (590)
|...++|..+|+-+|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 3345789999998999999998875
No 35
>smart00463 SMR Small MutS-related domain.
Probab=24.39 E-value=88 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 047877 513 YGTSGEETAEEFKKMIADGWKDI 535 (590)
Q Consensus 513 ~g~S~EeA~~~i~~mi~~~wk~l 535 (590)
||++.++|+..+...++++++.-
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999888764
No 36
>PRK10581 geranyltranstransferase; Provisional
Probab=22.72 E-value=4.5e+02 Score=27.65 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhcc-cccccchHHHH--HHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcC
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNAI-VTGTCFLDPAA--AYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIAD 489 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~-~Ssg~~~~~~~--~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 489 (590)
..++.+-..+..|.. ..+|.++|++.-. .|+.. ...+. .-+..|.. +++..+. ..++-+..++..-+.||
T Consensus 152 ~~l~~GQ~ld~~~~~--~~~~~~~y~~i~~~KTa~L-~~~~~~~gailag~~-~~~~~~~---l~~~g~~lG~aFQI~DD 224 (299)
T PRK10581 152 AGMCGGQALDLEAEG--KQVPLDALERIHRHKTGAL-IRAAVRLGALSAGDK-GRRALPV---LDRYAESIGLAFQVQDD 224 (299)
T ss_pred chhhHhhHHHHhccC--CCCCHHHHHHHHHHhhHHH-HHHHHHHHHHHcCCC-cHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 346777777777753 4689999998755 45444 22221 11222321 2233333 34677888888899999
Q ss_pred cccchhh-hhcCC-----c----cchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 490 LVSNKAE-QERGH-----V----ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 490 I~S~kkE-~~rG~-----~----~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
|..+... ..-|. . .|.+.++ ..|.|.+.+.+.++.+.+.+..
T Consensus 225 ilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~------~~e~a~~~a~~~~~~A~~~l~~ 276 (299)
T PRK10581 225 ILDVVGDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLDQ 276 (299)
T ss_pred HccccCChHHHCCCcchhhhcCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9987432 22222 1 1343333 2478888888888888777654
No 37
>PF12469 DUF3692: CRISPR-associated protein ; InterPro: IPR024615 This uncharacterised N-terminal domain family is typically between 101 and 138 amino acids in length. ; PDB: 3UNG_C 4DOZ_A 3UR3_C.
Probab=22.10 E-value=1.1e+02 Score=27.62 Aligned_cols=41 Identities=29% Similarity=0.459 Sum_probs=25.6
Q ss_pred hcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 047877 498 ERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEEC 539 (590)
Q Consensus 498 ~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~e~ 539 (590)
.+..++|-+...+-. +-..++..+++++.+.+.|+++-+.|
T Consensus 77 ~~~~~Pnr~~a~~p~-~~~~~~~~~~~k~~~~~~w~~i~~~v 117 (117)
T PF12469_consen 77 PRAGIPNRFLAIVPG-DEEAEELAEEAKEAIREAWKEIAEKV 117 (117)
T ss_dssp GSB---SEEEEEEET-TT-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred cccCCCceeeeecCc-hhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333346776544432 22578899999999999999987653
No 38
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=21.74 E-value=90 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=21.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047877 513 YGTSGEETAEEFKKMIADGWKDINEE 538 (590)
Q Consensus 513 ~g~S~EeA~~~i~~mi~~~wk~ln~e 538 (590)
||++.+||+..+...+.++++.-...
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~~ 29 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIRE 29 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHSE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCE
Confidence 79999999999999999998764433
No 39
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=21.64 E-value=95 Score=32.18 Aligned_cols=66 Identities=24% Similarity=0.271 Sum_probs=50.1
Q ss_pred ccchhhhhcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH----------HhcCCCCCCHhHHHHHHHHhhh
Q 047877 491 VSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE----------ECMRPTIVPMRLLNVIVNIARL 559 (590)
Q Consensus 491 ~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~----------e~l~~~~~p~~~~~~~~N~aR~ 559 (590)
..+++||+ .+++++..+...|.+.++|.+.++--+++.|-++=. +.|...++|...+..+.++||-
T Consensus 95 ~~wk~~qk---a~klle~aaekl~~~~ee~~~~vg~~L~e~fG~~y~aFE~aa~~g~~~l~~~~~~~~~~~~l~e~a~e 170 (269)
T COG1093 95 QEWKKEQK---ADKLLELAAEKLGKDLEEAYEEVGWKLEEEFGSLYDAFEAAAKEGGEVLDDEGVPEEWKEVLKEIARE 170 (269)
T ss_pred HHHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHhHHHHHHhCCHHHHHHHHHhcCCcccccCCCCHHHHHHHHHHHHh
Confidence 34567775 357788888889999999999999888877755422 3444457898999999999973
Done!