Query 047877
Match_columns 590
No_of_seqs 231 out of 898
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 9E-168 3E-172 1382.0 48.6 540 46-590 13-554 (554)
2 3m00_A Aristolochene synthase; 100.0 1E-166 4E-171 1371.9 48.1 533 51-590 13-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 1E-165 3E-170 1367.5 43.7 533 54-589 14-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 5E-160 2E-164 1327.8 47.5 535 54-589 1-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 1E-159 4E-164 1325.1 42.1 536 53-589 4-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 1E-159 5E-164 1327.7 42.3 546 37-589 17-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 7E-143 3E-147 1230.0 41.8 491 99-590 295-817 (817)
8 3s9v_A Abietadiene synthase, c 100.0 2E-142 5E-147 1223.0 44.2 488 99-589 267-785 (785)
9 3p5p_A Taxadiene synthase; cla 100.0 2E-142 8E-147 1218.6 44.5 488 99-590 243-756 (764)
10 3pya_A ENT-copalyl diphosphate 100.0 2E-107 7E-112 922.1 34.0 476 56-589 192-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.9E-51 6.4E-56 431.3 15.9 252 279-539 14-270 (337)
12 1di1_A Aristolochene synthase; 100.0 1E-49 3.6E-54 411.0 19.0 243 281-539 12-264 (300)
13 3bny_A Aristolochene synthase; 100.0 2.1E-48 7.3E-53 405.3 17.9 248 276-539 21-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 4.7E-46 1.6E-50 398.2 18.3 248 284-538 59-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 6.5E-33 2.2E-37 300.3 20.0 247 283-539 127-390 (433)
16 1yyq_A Trichodiene synthase; t 99.7 5.8E-18 2E-22 179.9 13.1 245 288-559 33-294 (374)
17 3sdr_A Alpha-bisabolene syntha 96.9 0.0002 6.7E-09 83.0 1.1 44 53-96 23-68 (817)
18 3acx_A Dehydrosqualene synthas 79.5 53 0.0018 32.7 18.1 183 328-538 38-232 (293)
19 3lmd_A Geranylgeranyl pyrophos 72.9 12 0.00042 38.9 9.4 85 403-494 160-246 (360)
20 3ipi_A Geranyltranstransferase 67.8 22 0.00075 36.0 9.7 141 404-559 128-278 (295)
21 4hd1_A Squalene synthase HPNC; 65.0 1.2E+02 0.0039 30.3 19.2 187 329-550 40-239 (294)
22 2ftz_A Geranyltranstransferase 58.4 61 0.0021 32.5 10.9 120 404-537 135-264 (284)
23 3mzv_A Decaprenyl diphosphate 56.4 78 0.0027 32.5 11.6 87 403-495 139-227 (341)
24 3oyr_A Trans-isoprenyl diphosp 55.3 56 0.0019 33.7 10.3 87 403-495 151-239 (345)
25 3m0g_A Farnesyl diphosphate sy 54.0 26 0.00089 35.4 7.4 110 413-536 147-268 (297)
26 3rmg_A Octaprenyl-diphosphate 53.3 1.5E+02 0.0052 30.1 13.2 87 403-495 133-221 (334)
27 3ts7_A Geranyltranstransferase 52.8 52 0.0018 33.7 9.5 111 413-536 158-281 (324)
28 1rtr_A Geranyltranstransferase 52.7 36 0.0012 34.4 8.2 112 413-537 148-271 (301)
29 3p8l_A Geranyltranstransferase 52.7 50 0.0017 33.4 9.2 110 413-537 156-279 (302)
30 3p8r_A Geranyltranstransferase 50.8 37 0.0013 34.4 7.9 111 413-537 158-282 (302)
31 3lsn_A Geranyltranstransferase 48.7 50 0.0017 33.4 8.5 109 415-536 154-275 (304)
32 1wy0_A Geranylgeranyl pyrophos 47.6 59 0.002 33.3 9.0 85 404-494 138-224 (342)
33 2h8o_A Geranyltranstransferase 42.7 54 0.0018 33.7 7.7 111 413-537 192-315 (335)
34 3lom_A Geranyltranstransferase 42.4 82 0.0028 32.0 9.0 112 413-536 158-282 (313)
35 4f62_A Geranyltranstransferase 41.8 61 0.0021 33.0 7.9 110 414-537 152-275 (317)
36 4dhd_A Polyprenyl synthetase; 41.2 87 0.003 32.3 9.1 86 404-494 133-231 (358)
37 3pde_A Farnesyl-diphosphate sy 39.0 92 0.0032 31.6 8.7 109 414-537 156-278 (309)
38 1pd3_A Nonstructural protein N 37.6 20 0.00069 26.7 2.5 33 82-115 16-48 (58)
39 3npk_A Geranyltranstransferase 37.6 1.4E+02 0.0047 30.0 9.6 112 412-536 144-265 (291)
40 1rqj_A Geranyltranstransferase 37.2 1.2E+02 0.0041 30.3 9.2 112 413-537 152-276 (299)
41 3pko_A Geranylgeranyl pyrophos 35.6 1E+02 0.0036 31.4 8.6 102 404-512 144-258 (334)
42 3uca_A Geranyltranstransferase 34.4 1.2E+02 0.004 31.0 8.6 111 413-537 180-304 (324)
43 3apz_A Geranyl diphosphate syn 33.8 1E+02 0.0035 31.6 8.2 88 403-495 153-241 (348)
44 1wmw_A Geranylgeranyl diphosph 33.2 1.2E+02 0.004 30.8 8.5 84 404-494 131-218 (330)
45 3llw_A Geranyltranstransferase 33.1 88 0.003 31.7 7.4 112 413-536 159-280 (311)
46 3nf2_A Putative polyprenyl syn 32.2 1.3E+02 0.0043 31.0 8.6 85 404-494 144-230 (352)
47 3s9v_A Abietadiene synthase, c 31.9 20 0.00067 41.3 2.5 38 59-96 5-45 (785)
48 1uby_A FPS, farnesyl diphospha 22.2 2E+02 0.007 29.6 8.0 88 404-495 170-264 (367)
49 3vj8_A Squalene synthase; farn 22.2 6.2E+02 0.021 25.6 17.5 192 328-537 37-245 (343)
50 2j1p_A Geranylgeranyl pyrophos 21.4 60 0.002 32.6 3.6 108 414-536 161-271 (293)
51 3fau_A NEDD4-binding protein 2 20.4 77 0.0026 25.2 3.4 23 513-535 6-28 (82)
52 2q80_A Geranylgeranyl pyrophos 20.1 2.3E+02 0.008 28.3 7.7 84 403-494 111-195 (301)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=9e-168 Score=1381.98 Aligned_cols=540 Identities=42% Similarity=0.797 Sum_probs=498.2
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcCC-CcchhhhHHHHHHHHHHHHHHHHhhcCCCcccchhHhHHHhhhCcccccHHH
Q 047877 46 AYKNNQENDRPLGNFRPTIWKDGSISS-PVLEVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENE 124 (590)
Q Consensus 46 ~~~~~~~~~r~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~e~lk~~vr~~l~~~~~~~~~~l~lID~lqrLGi~~hFe~E 124 (590)
+.+.+.++.||+||||||+|||+||++ +++..+.+.+|+++||++||+||.+...|+.++|+|||+||||||+|||++|
T Consensus 13 ~~~~~~~~~R~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~E 92 (554)
T 3g4d_A 13 PLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKE 92 (554)
T ss_dssp ------------CCCCCCTTTTTTTSCCC---CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHH
T ss_pred hhhccCCCCCCCCCCCccccccccccCCCchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHH
Confidence 333445568999999999999999998 3334677899999999999999974357899999999999999999999999
Q ss_pred HHHHHHHHHhhCCccccCCCCChhhHHHHHHHhhhcCccccccccccccccccccccccccChHHHhhHhhhcccCCCCc
Q 047877 125 IEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGE 204 (590)
Q Consensus 125 I~~~L~~iy~~~~~~~~~~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE 204 (590)
|+++|++||+. + ..++.||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||
T Consensus 93 I~~~L~~i~~~--~--~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE 168 (554)
T 3g4d_A 93 IEDELENIYHN--N--NDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGE 168 (554)
T ss_dssp HHHHHHHHHHS--C--CCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHhc--c--CCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCc
Confidence 99999999985 1 2133699999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHhcCCccCCchhhhHhhhHhhccCCCcCCHHHHHHHhhhhHHHhhhhH
Q 047877 205 DILEEALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQ 284 (590)
Q Consensus 205 ~iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq 284 (590)
+|||||+.||++||++.+. +++++|+++|+|||++|||+++||+|||+||++|++++++|++||||||||||+||++||
T Consensus 169 ~iLdeA~~fs~~~L~~~~~-~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq 247 (554)
T 3g4d_A 169 DILDEAISFTTHHLSLAVA-SLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHR 247 (554)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999887 677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhh
Q 047877 285 QELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVE 364 (590)
Q Consensus 285 ~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~ave 364 (590)
+||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+
T Consensus 248 ~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~ 327 (554)
T 3g4d_A 248 KELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIE 327 (554)
T ss_dssp HHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccc
Q 047877 365 RWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVT 444 (590)
Q Consensus 365 rWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S 444 (590)
|||++++++||+|||+||.+++++++|+++++.++||+++++|++++|+++++||++||+|+++||+||+||||+||++|
T Consensus 328 RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vS 407 (554)
T 3g4d_A 328 RWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPT 407 (554)
T ss_dssp HCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGG
T ss_pred hcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHHHHHHHH
Q 047877 445 GTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEF 524 (590)
Q Consensus 445 sg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i 524 (590)
+|+++++++++++||+.+|+|+++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|||++++
T Consensus 408 sg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i 487 (554)
T 3g4d_A 408 CGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVF 487 (554)
T ss_dssp SCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHH
T ss_pred ehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhhhhchhcccCCCCCCchh-HHHHHHHHhccccCC
Q 047877 525 KKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEY-LKDHVTKLFIDPILV 590 (590)
Q Consensus 525 ~~mi~~~wk~ln~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~i 590 (590)
++||+++||+||++|++++++|++|+++++|+||++++||+++||||.|+. ||++|++||++||++
T Consensus 488 ~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 488 NKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 999999999999999998899999999999999999999999999999965 999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.2e-166 Score=1371.87 Aligned_cols=533 Identities=45% Similarity=0.820 Sum_probs=508.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcCC-Ccc-hhhhHHHHHHHHHHHHHHHHhhcCCCcccchhHhHHHhhhCcccccHHHHHHH
Q 047877 51 QENDRPLGNFRPTIWKDGSISS-PVL-EVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEER 128 (590)
Q Consensus 51 ~~~~r~~~~~~ps~W~~~fl~~-~~~-~~~~~~~~~e~lk~~vr~~l~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~~ 128 (590)
.++.||+||||||+|||+||++ ++. ..+.+.+|+|+||++||+||.+...|+.++|+|||+||||||+|||++||+++
T Consensus 13 ~~~~R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~ 92 (550)
T 3m00_A 13 EEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDI 92 (550)
T ss_dssp ---CCCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHH
T ss_pred cccCCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 3357999999999999999998 544 46788999999999999999743578999999999999999999999999999
Q ss_pred HHHHHhhCCccccCCCCChhhHHHHHHHhhhcCccccccccccccccccccccccccChHHHhhHhhhcccCCCCchHHH
Q 047877 129 LNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILE 208 (590)
Q Consensus 129 L~~iy~~~~~~~~~~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLd 208 (590)
|++||++|.+ ..||++|||+|||||||||+||||||++|||++|+|++++.+||+|||||||||||++|||+|||
T Consensus 93 L~~i~~~~~~-----~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLd 167 (550)
T 3m00_A 93 LDQIYNQNSN-----CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 167 (550)
T ss_dssp HHHHHHHCCC-----CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGT
T ss_pred HHHHHHhccc-----CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHHH
Confidence 9999998732 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhHHHHHHHHhcCCccCCchhhhHhhhHh-hccCCCcCCHHHHHHHhhhhHHHhhhhHHHH
Q 047877 209 EALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQEL 287 (590)
Q Consensus 209 ea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~-~y~~~~~~n~~lLelAkldFn~~Q~~hq~El 287 (590)
||+.||++||++.++ +++++|+++|+|||++|||+++||+|||+||+ +|++++++|++||||||||||+||++||+||
T Consensus 168 eA~~fs~~~L~~~~~-~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL 246 (550)
T 3m00_A 168 DALAFSTIHLESAAP-HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 246 (550)
T ss_dssp THHHHHHHHHHHHGG-GCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999876 56788999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcC
Q 047877 288 AYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWD 367 (590)
Q Consensus 288 ~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD 367 (590)
++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+|||
T Consensus 247 ~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD 326 (550)
T 3m00_A 247 AQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWD 326 (550)
T ss_dssp HHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhccccccc
Q 047877 368 INCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTC 447 (590)
Q Consensus 368 ~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~ 447 (590)
++++++||+|||+||.+++++++|+++++.++||+++++|++++|+++++||++||+|+++||+||+||||+||++|+|+
T Consensus 327 ~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~ 406 (550)
T 3m00_A 327 INEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTY 406 (550)
T ss_dssp GGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSH
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHHHHHHHHHHH
Q 047877 448 FLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKM 527 (590)
Q Consensus 448 ~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~m 527 (590)
+++++++++|+ +.+|+|+++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++++++|
T Consensus 407 ~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~ 485 (550)
T 3m00_A 407 YLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 485 (550)
T ss_dssp HHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999998877 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHhHHHHHHHHhhhhchhcccC-CCCCCchh-HHHHHHHHhccccCC
Q 047877 528 IADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKM-DGVTNPEY-LKDHVTKLFIDPILV 590 (590)
Q Consensus 528 i~~~wk~ln~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~-Dg~t~~~~-~k~~i~~ll~~pi~i 590 (590)
|+++||+||++|++++++|++|+++++|+||++++||+++ ||||.|+. ||++|++||++||+|
T Consensus 486 Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 486 AETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 9999999999999988999999999999999999999998 99999975 999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=9.8e-166 Score=1367.45 Aligned_cols=533 Identities=32% Similarity=0.573 Sum_probs=502.9
Q ss_pred CCCCCCCCCCCCCCCCcCC-Ccc-hhhhHHHHHHHHHHHHHHHHhhcCC-CcccchhHhHHHhhhCcccccHHHHHHHHH
Q 047877 54 DRPLGNFRPTIWKDGSISS-PVL-EVETYDKLNEEMKDHVKEMLVASRN-DPVEEVVLINLLCRLGVSYHFENEIEERLN 130 (590)
Q Consensus 54 ~r~~~~~~ps~W~~~fl~~-~~~-~~~~~~~~~e~lk~~vr~~l~~~~~-~~~~~l~lID~lqrLGi~~hFe~EI~~~L~ 130 (590)
.|++||||||+|||+||++ +++ ..+.+.+|+++||++||+||.+ .. +++++|+|||+||||||+|||++||+++|+
T Consensus 14 ~~~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~-~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~ 92 (555)
T 3n0f_A 14 ARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINN-EKAEFLTLLELIDNVQRLGLGYRFESDIRRALD 92 (555)
T ss_dssp ---CCCCCCCTTCHHHHTCC-----CHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHH
T ss_pred cCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHcCchhhhHHHHHHHHH
Confidence 6999999999999999998 543 4678999999999999999975 45 899999999999999999999999999999
Q ss_pred HHHhhCCcc-ccCCCCChhhHHHHHHHhhhcCccccccccccccccccccccccccChHHHhhHhhhcccCCCCchHHHH
Q 047877 131 HIFEMQPDL-AAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEE 209 (590)
Q Consensus 131 ~iy~~~~~~-~~~~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLde 209 (590)
+||+.- +. .+ ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+||||
T Consensus 93 ~i~~~~-~~~~~-~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLde 170 (555)
T 3n0f_A 93 RFVSSG-GFDGV-TKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDE 170 (555)
T ss_dssp HHHHTC-HHHHH-TTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHH
T ss_pred HHHhhc-ccccc-ccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHH
Confidence 999731 00 12 3479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChhHHHHHHHHhcCCccCCchhhhHhhhHhhccCCCcCCHHHHHHHhhhhHHHhhhhHHHHHH
Q 047877 210 ALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAY 289 (590)
Q Consensus 210 a~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~ 289 (590)
|+.||++||++.+.++++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++
T Consensus 171 A~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~ 250 (555)
T 3n0f_A 171 ARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRE 250 (555)
T ss_dssp HHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 99999999998764235688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcCcc
Q 047877 290 ITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDIN 369 (590)
Q Consensus 290 lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD~~ 369 (590)
++|||+++||+++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+||+++||+||+|||++
T Consensus 251 lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~ 330 (555)
T 3n0f_A 251 TSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVN 330 (555)
T ss_dssp HHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCcc
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccch
Q 047877 370 CVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFL 449 (590)
Q Consensus 370 ~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~ 449 (590)
++++||+|||+||.+|+++++|++.++.+++|.++++|++++|+++++||++||+|+++||+||+||||+||.+|+|+++
T Consensus 331 ~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~ 410 (555)
T 3n0f_A 331 AINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPL 410 (555)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHH
Confidence 99999999999999999999999998888777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHHHHHHHHHHHHH
Q 047877 450 DPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIA 529 (590)
Q Consensus 450 ~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~ 529 (590)
++++++++||+.+|+|+++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++++++||+
T Consensus 411 l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie 490 (555)
T 3n0f_A 411 QLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLID 490 (555)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHhhhhchhcccCCCCCCchh-HHHHHHHHhccccC
Q 047877 530 DGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEY-LKDHVTKLFIDPIL 589 (590)
Q Consensus 530 ~~wk~ln~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~ 589 (590)
++||+||++|++++++|++|+++++|+||++++||+++||||.|+. ||++|++||++||+
T Consensus 491 ~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 491 ETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 9999999999998899999999999999999999999999999975 99999999999996
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=5.2e-160 Score=1327.81 Aligned_cols=535 Identities=31% Similarity=0.523 Sum_probs=511.7
Q ss_pred CCCCCCCCCCCCCCCCcCC-Ccc-hhhhHHHHHHHHHHHHHHHHhhcCCCcccchhHhHHHhhhCcccccHHHHHHHHHH
Q 047877 54 DRPLGNFRPTIWKDGSISS-PVL-EVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNH 131 (590)
Q Consensus 54 ~r~~~~~~ps~W~~~fl~~-~~~-~~~~~~~~~e~lk~~vr~~l~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~ 131 (590)
.||++|||||+|||+||++ ++. ..+.+.+++++||++||+|+.+ ..|++++|+|||+||||||+|||++||+++|++
T Consensus 1 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~V~~~~~~-~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~ 79 (543)
T 2ong_A 1 MRRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEK-ETDQIRQLELIDDLQRMGLSDHFQNEFKEILSS 79 (543)
T ss_dssp CCCCCCCCCCSSCHHHHHHCCCSSCSTHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCcccccCCCchhhhhHHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHH
Confidence 3899999999999999987 433 4557899999999999999986 458999999999999999999999999999999
Q ss_pred HHhhCCccc-c-CC-CCChhhHHHHHHHhhhcCccccccccccccccccccccccccChHHHhhHhhhcccCCCCchHHH
Q 047877 132 IFEMQPDLA-A-EK-DCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILE 208 (590)
Q Consensus 132 iy~~~~~~~-~-~~-~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLd 208 (590)
||++|.+++ + .+ ..||++|||+|||||||||+||||||++|||++|+|++++++||+|||||||||||++|||+|||
T Consensus 80 i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ 159 (543)
T 2ong_A 80 IYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLE 159 (543)
T ss_dssp HHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHH
T ss_pred HHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHH
Confidence 999884321 1 12 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCC-ChhHHHHHHHHhcCCccCCchhhhHhhhHhhccCCCcCCHHHHHHHhhhhHHHhhhhHHHH
Q 047877 209 EALTFTTAHLKSMAAPNL-DQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQEL 287 (590)
Q Consensus 209 ea~~ft~~~L~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El 287 (590)
||+.||++||++.+...+ +++|+++|+|||++|||+++||+|||+||++|++++++|++||||||||||+||++||+||
T Consensus 160 eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El 239 (543)
T 2ong_A 160 SAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEEL 239 (543)
T ss_dssp HHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999876224 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcC
Q 047877 288 AYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWD 367 (590)
Q Consensus 288 ~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD 367 (590)
++++|||+++||.+++||||||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||
T Consensus 240 ~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD 319 (543)
T 2ong_A 240 KESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWD 319 (543)
T ss_dssp HHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Confidence 99999999999987899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhccccccc
Q 047877 368 INCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTC 447 (590)
Q Consensus 368 ~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~ 447 (590)
+++++++|+|||+||.+++++++|++.++.+.++.++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+
T Consensus 320 ~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~ 399 (543)
T 2ong_A 320 INSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISG 399 (543)
T ss_dssp SSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCH
T ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchH
Confidence 99999999999999999999999999999887777899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHHHHHHHHHHH
Q 047877 448 FLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKM 527 (590)
Q Consensus 448 ~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~m 527 (590)
++++++++++||..+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++
T Consensus 400 ~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ 479 (543)
T 2ong_A 400 PCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWL 479 (543)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCCCCCCHhHHHHHHHHhhhhchhcccCCCCCCchh-HHHHHHHHhccccC
Q 047877 528 IADGWKDINEEC-MRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEY-LKDHVTKLFIDPIL 589 (590)
Q Consensus 528 i~~~wk~ln~e~-l~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~ 589 (590)
|+++||+||+++ ++++++|++|+++++|+||+++++|+++||||.|+. ||++|++||++|||
T Consensus 480 ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 480 IAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 999999999999 998889999999999999999999999999999965 99999999999996
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1e-159 Score=1325.06 Aligned_cols=536 Identities=33% Similarity=0.544 Sum_probs=488.4
Q ss_pred CCCCCCCCCCCCCCCCCcCC-Ccc-hhhhHHHHHHHHHHHHHHHHhhcCCCcccchhHhHHHhhhCcccccHHHHHHHHH
Q 047877 53 NDRPLGNFRPTIWKDGSISS-PVL-EVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLN 130 (590)
Q Consensus 53 ~~r~~~~~~ps~W~~~fl~~-~~~-~~~~~~~~~e~lk~~vr~~l~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~ 130 (590)
+.||++|||||+|||+||++ +.. ..+.+.+++++||++||+|+.+ ..|++++|+|||+||||||+|||++||+++|+
T Consensus 4 ~~r~~~~~~ps~W~~~fl~s~~~~~~~~~~~~~~~~Lk~~V~~~~~~-~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~ 82 (549)
T 1n1b_A 4 QIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKE-KMEPVQQLELIHDLKYLGLSDFFQDEIKEILG 82 (549)
T ss_dssp -----------CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCcccCCCcchhhhHHHHHHHHHHHHHHHHHhc-ccCHHHHHHhHHHHHhCCchhhhHHHHHHHHH
Confidence 46999999999999999965 333 4567899999999999999986 45899999999999999999999999999999
Q ss_pred HHHhhCCccccC--CCCChhhHHHHHHHhhhcCcccccccccccccccc-ccccccccChHHHhhHhhhcccCCCCchHH
Q 047877 131 HIFEMQPDLAAE--KDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDG-NFKESLTSDARGMLSLYEATHLRVHGEDIL 207 (590)
Q Consensus 131 ~iy~~~~~~~~~--~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G-~F~~~l~~dv~glL~LYeAs~l~~~gE~iL 207 (590)
+||+.|.+.... ...||++|||+|||||||||+||||||++|||++| +|++++.+||+||||||||||+++|||+||
T Consensus 83 ~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL 162 (549)
T 1n1b_A 83 VIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL 162 (549)
T ss_dssp HHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHH
Confidence 999876321111 14699999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCC--C-ChhHHHHHHHHhcCCccCCchhhhHhhhHhhccCCCcCCHHHHHHHhhhhHHHhhhhH
Q 047877 208 EEALTFTTAHLKSMAAPN--L-DQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQ 284 (590)
Q Consensus 208 dea~~ft~~~L~~~~~~~--~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq 284 (590)
|||+.||++||++.+.+. + +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||
T Consensus 163 ~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq 242 (549)
T 1n1b_A 163 ELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQ 242 (549)
T ss_dssp HHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHH
Confidence 999999999999998731 4 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhh
Q 047877 285 QELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVE 364 (590)
Q Consensus 285 ~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~ave 364 (590)
+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+
T Consensus 243 ~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~ 322 (549)
T 1n1b_A 243 QELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFK 322 (549)
T ss_dssp HHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999987899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccc
Q 047877 365 RWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVT 444 (590)
Q Consensus 365 rWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S 444 (590)
|||+++++++|+|||+||.+++++++|++.++.+.++.++++|++++|++++++|++||+|+++||+||+||||++|.+|
T Consensus 323 rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS 402 (549)
T 1n1b_A 323 RWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 402 (549)
T ss_dssp HTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred hcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccc
Confidence 99999999999999999999999999999998887777899999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhcCCCcchhH-HHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHHHHHHH
Q 047877 445 GTCFLDPAAAYIGLGDIAGIDA-YEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEE 523 (590)
Q Consensus 445 sg~~~~~~~~~~~~g~~l~~e~-~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~ 523 (590)
+|+++++++++++||..+|+|+ ++|+.++|+++++++.|+||+|||+|+++|+++|+++|+|+|||+|+|+|+|||+++
T Consensus 403 ~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~ 482 (549)
T 1n1b_A 403 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEH 482 (549)
T ss_dssp TCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhhhhchhcccCCCCCCchh-HHHHHHHHhccccC
Q 047877 524 FKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEY-LKDHVTKLFIDPIL 589 (590)
Q Consensus 524 i~~mi~~~wk~ln~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~ 589 (590)
+++||+++||+||++|++++++|++|+++++|+||++++||+++||||.|+. ||++|++||++|||
T Consensus 483 i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 483 VKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 9999999999999999998899999999999999999999999999999975 99999999999996
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=1.5e-159 Score=1327.72 Aligned_cols=546 Identities=34% Similarity=0.515 Sum_probs=467.8
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCCcCC-Ccc-hhhhHHHHHHHHHHHHHHHHhhcCCCcccchhHhHHHhh
Q 047877 37 NSPSKVLCLAYKNNQENDRPLGNFRPTIWKDGSISS-PVL-EVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCR 114 (590)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~r~~~~~~ps~W~~~fl~~-~~~-~~~~~~~~~e~lk~~vr~~l~~~~~~~~~~l~lID~lqr 114 (590)
.-.+..+|.-..+..+..||++|||||+|||+||++ ++. ..+.+.+++++||++||+|+.+ ..|++++|+|||+|||
T Consensus 17 ~~~~~~~~~~~~~~~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~Vr~~~~~-~~d~~~~l~lID~lqr 95 (569)
T 2j5c_A 17 GGQQMGRDLYDDDDKDRWIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQE-EVDSIRRLELIDDLRR 95 (569)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCcccccCCCCCCCCCcCCcccccCCCchhhhHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHh
Confidence 334455566554445567999999999999999998 433 4557899999999999999986 4589999999999999
Q ss_pred hCcccccHHHHHHHHHHHH-hhCCccccCCCCChhhHHHHHHHhhhcCcccccccccccccccc-ccccccccChHHHhh
Q 047877 115 LGVSYHFENEIEERLNHIF-EMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDG-NFKESLTSDARGMLS 192 (590)
Q Consensus 115 LGi~~hFe~EI~~~L~~iy-~~~~~~~~~~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G-~F~~~l~~dv~glL~ 192 (590)
|||+|||++||+++|++|| +.+.+ ...||++|||+|||||||||+||||||++|||++| +|++++.+||+||||
T Consensus 96 LGi~~hFe~EI~~~L~~i~~~~~~~----~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~ 171 (569)
T 2j5c_A 96 LGISCHFEREIVEILNSKYYTNNEI----DERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQ 171 (569)
T ss_dssp HTCGGGGHHHHHHHHHHHTTSSCCS----CTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHH
T ss_pred CCchhhhHHHHHHHHHHHHHhccCc----ccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHH
Confidence 9999999999999999999 76421 34699999999999999999999999999999999 999999999999999
Q ss_pred HhhhcccCCCCchHHHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHhcCCccCCchhhhHhhhHhhccCCCcCCHHHHHH
Q 047877 193 LYEATHLRVHGEDILEEALTFTTAHLKSMAAPNL-DQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKF 271 (590)
Q Consensus 193 LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLel 271 (590)
|||||||++|||+|||||+.||++||++++. ++ +++|+++|+|||++|||+++||||||+||++|++++++|++||||
T Consensus 172 LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~-~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLel 250 (569)
T 2j5c_A 172 LYEASFLSAQGEETLRLARDFATKFLQKRVL-VDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLEL 250 (569)
T ss_dssp HHHHHTTCCTTCHHHHHHHHHHHHTTSSCC-----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHh-hcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHH
Confidence 9999999999999999999999999999887 56 789999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCC
Q 047877 272 AKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYG 351 (590)
Q Consensus 272 AkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~yg 351 (590)
||||||+||++||+||++++|||+++||.+++||||||++|||||++|++|||++|.+|+++||+++|+|++||+||+||
T Consensus 251 AkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~yg 330 (569)
T 2j5c_A 251 AKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYG 330 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 047877 352 TFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYV 431 (590)
Q Consensus 352 t~eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~i 431 (590)
|++|++.||+||+|||+++++++|+|||+||.+++++++|++.++.+.++.++++|++++|++++++|++||+|+.+||+
T Consensus 331 T~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~v 410 (569)
T 2j5c_A 331 TLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHK 410 (569)
T ss_dssp CHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999988777789999999999999999999999999999
Q ss_pred CChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhh
Q 047877 432 PPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMK 511 (590)
Q Consensus 432 PtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMk 511 (590)
||+||||+||.+|+|+++++++++++||..+|+|+++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+
T Consensus 411 Pt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMk 490 (569)
T 2j5c_A 411 PSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMN 490 (569)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC--
T ss_pred CCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhhhhchhcccC-CCCCCchh-HHHHHHHHhccccC
Q 047877 512 EYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKM-DGVTNPEY-LKDHVTKLFIDPIL 589 (590)
Q Consensus 512 e~g~S~EeA~~~i~~mi~~~wk~ln~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~-Dg~t~~~~-~k~~i~~ll~~pi~ 589 (590)
|+|+|+|+|+++++++|+++||+||++|++ +++|++|+++++|+||+++++|+++ ||||.|+. ||++|++||++|||
T Consensus 491 e~g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 491 EKNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999 8899999999999999999999999 99999965 99999999999996
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=7.3e-143 Score=1230.04 Aligned_cols=491 Identities=33% Similarity=0.576 Sum_probs=458.1
Q ss_pred CCCcccchhHhHHHhhhCcccccHHHHHHHHHHHHhhCCcc-ccC----CCCChhhHHHHHHHhhhcCcccccccccccc
Q 047877 99 RNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDL-AAE----KDCDLYATAILFRVFRQHGFNVSSGVFNKFK 173 (590)
Q Consensus 99 ~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~iy~~~~~~-~~~----~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~ 173 (590)
|.|++++|+|||+||||||+|||++||+++|+++|+.|.+. +.. ...||++|||+|||||||||+||||||++|+
T Consensus 295 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 374 (817)
T 3sdr_A 295 PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFK 374 (817)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHh
Confidence 57899999999999999999999999999999999988542 111 1359999999999999999999999999999
Q ss_pred cccccccccc---ccChHHHhhHhhhcccCCCCchHHHHHHHHHHHHHhhccCC--CC-----ChhHHHHHHHHhcCCcc
Q 047877 174 DHDGNFKESL---TSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAP--NL-----DQNLAKHINDALEQPLH 243 (590)
Q Consensus 174 d~~G~F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--~~-----~~~l~~~V~~aL~~P~~ 243 (590)
|++|+|++++ .+||+|||||||||||++|||+|||||+.||++||++.+.+ .+ .++|++||+|||++|||
T Consensus 375 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~ 454 (817)
T 3sdr_A 375 DANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWH 454 (817)
T ss_dssp CC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCST
T ss_pred hcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchh
Confidence 9999999966 58999999999999999999999999999999999998752 11 36799999999999999
Q ss_pred CCchhhhHhhhHhhccCCCc------------CCHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCchhhhHHH
Q 047877 244 MGVPRIEAHKFISFYEHDDS------------KNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTV 311 (590)
Q Consensus 244 ~~~~rlear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~v 311 (590)
+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++|+ .++||||||++
T Consensus 455 ~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~v 533 (817)
T 3sdr_A 455 ASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPL 533 (817)
T ss_dssp TCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHH
T ss_pred ccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHH
Confidence 99999999999999998875 499999999999999999999999999999999999 59999999999
Q ss_pred HHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHH
Q 047877 312 EIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDE 391 (590)
Q Consensus 312 e~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~e 391 (590)
|||||++|++|||+||.+|+++||+++|++++||+||+|||+||+++||+||+|||.+++++||||||+||.+|+++++|
T Consensus 534 e~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e 613 (817)
T 3sdr_A 534 EFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHE 613 (817)
T ss_dssp HHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccch-HHHHHHHhcCCCcchhHHHhh
Q 047877 392 LNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFL-DPAAAYIGLGDIAGIDAYEWL 470 (590)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~-~~~~~~~~~g~~l~~e~~e~~ 470 (590)
++.++.+++|.++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++ +++++++++|+.+|+|+++|+
T Consensus 614 ~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~ 693 (817)
T 3sdr_A 614 VAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKV 693 (817)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTT
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcc
Confidence 9988877656688999999999999999999999999999999999999999999999 888889999999999999997
Q ss_pred h--chhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 047877 471 R--SQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEY-GTSGEETAEEFKKMIADGWKDINEECMRPTIVPM 547 (590)
Q Consensus 471 ~--~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~-g~S~EeA~~~i~~mi~~~wk~ln~e~l~~~~~p~ 547 (590)
. ++|+|+++++.|+||+|||+||++|+++|+++|+|+|||||+ |+|+|+|+++++++|+++||+||++|++++++|+
T Consensus 694 ~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p~ 773 (817)
T 3sdr_A 694 DYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPF 773 (817)
T ss_dssp CCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCH
T ss_pred cccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 6 456999999999999999999999999999999999999999 7999999999999999999999999999889999
Q ss_pred hHHHHHHHHhhhhchhcccCCCCCCchh-HHHHHHHHhccccCC
Q 047877 548 RLLNVIVNIARLVEVFYKKMDGVTNPEY-LKDHVTKLFIDPILV 590 (590)
Q Consensus 548 ~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~i 590 (590)
+|+++++|+||++++||+++||||.|+. ||++|++||++||++
T Consensus 774 ~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 774 ACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999975 999999999999985
No 8
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.6e-142 Score=1222.96 Aligned_cols=488 Identities=31% Similarity=0.532 Sum_probs=461.2
Q ss_pred CCCcccchhHhHHHhhhCcccccHHHHHHHHHHHHhhCCccc-cC----CCCChhhHHHHHHHhhhcCcccccccccccc
Q 047877 99 RNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLA-AE----KDCDLYATAILFRVFRQHGFNVSSGVFNKFK 173 (590)
Q Consensus 99 ~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~iy~~~~~~~-~~----~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~ 173 (590)
|.|++++|++||+||||||+|||++||+++|+++|+.|.+++ .. ...||++|||+|||||||||+||||||++|+
T Consensus 267 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 346 (785)
T 3s9v_A 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFR 346 (785)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 578999999999999999999999999999999999885421 11 1359999999999999999999999999999
Q ss_pred cccccccccc---ccChHHHhhHhhhcccCCCCchHHHHHHHHHHHHHhhccCC-------CCChhHHHHHHHHhcCCcc
Q 047877 174 DHDGNFKESL---TSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAP-------NLDQNLAKHINDALEQPLH 243 (590)
Q Consensus 174 d~~G~F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-------~~~~~l~~~V~~aL~~P~~ 243 (590)
|++|+|++++ .+||+|||||||||||++|||+|||||+.||++||++.+.+ .++++|++||+|||++|||
T Consensus 347 d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~ 426 (785)
T 3s9v_A 347 DENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWH 426 (785)
T ss_dssp CTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGG
T ss_pred hcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccc
Confidence 9999999876 69999999999999999999999999999999999998652 2467899999999999999
Q ss_pred CCchhhhHhhhHhhccCCCc------------CCHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCchhhhHHH
Q 047877 244 MGVPRIEAHKFISFYEHDDS------------KNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTV 311 (590)
Q Consensus 244 ~~~~rlear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~v 311 (590)
+++||||||+||++|++++. +|++||||||||||+||++||+||++++|||+++|+ .++||||||++
T Consensus 427 ~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~v 505 (785)
T 3s9v_A 427 KSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVT 505 (785)
T ss_dssp GCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHH
T ss_pred cCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHH
Confidence 99999999999999998875 499999999999999999999999999999999999 69999999999
Q ss_pred HHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHH
Q 047877 312 EIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDE 391 (590)
Q Consensus 312 e~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~e 391 (590)
|||||++|++|||+||.+|+++||+++|++++||+||+|||+||+++||+||+|||++++++||+|||+||.+|+++++|
T Consensus 506 e~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~ne 585 (785)
T 3s9v_A 506 EIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFND 585 (785)
T ss_dssp HHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhh
Q 047877 392 LNNELAE-EGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWL 470 (590)
Q Consensus 392 i~~~~~~-~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~ 470 (590)
+++++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++++++++++||+.+|+|+++|+
T Consensus 586 i~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~ 664 (785)
T 3s9v_A 586 IAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKI 664 (785)
T ss_dssp HHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTT
T ss_pred HHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcc
Confidence 9988877 555 78999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhH
Q 047877 471 RSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEY-GTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRL 549 (590)
Q Consensus 471 ~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~-g~S~EeA~~~i~~mi~~~wk~ln~e~l~~~~~p~~~ 549 (590)
..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||||+ |+|+|+|+++++++|+++||+||++|++++ +|++|
T Consensus 665 ~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~ 743 (785)
T 3s9v_A 665 DRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDIY 743 (785)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHH
T ss_pred cccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHH
Confidence 7779999999999999999999999999999999999999999 899999999999999999999999999987 99999
Q ss_pred HHHHHHHhhhhchhcccCCCCCCchh--HHHHHHHHhccccC
Q 047877 550 LNVIVNIARLVEVFYKKMDGVTNPEY--LKDHVTKLFIDPIL 589 (590)
Q Consensus 550 ~~~~~N~aR~~~~~Y~~~Dg~t~~~~--~k~~i~~ll~~pi~ 589 (590)
+++++|+||++++||+++||||.|+. ||++|++||++||.
T Consensus 744 ~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 744 KRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999999999999999964 99999999999983
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=2.4e-142 Score=1218.59 Aligned_cols=488 Identities=32% Similarity=0.540 Sum_probs=457.7
Q ss_pred CCCcccchhHhHHHhhhCcccccHHHHHHHHHHHHhhCCcc-ccC--C--CCChhhHHHHHHHhhhcCcccccccccccc
Q 047877 99 RNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDL-AAE--K--DCDLYATAILFRVFRQHGFNVSSGVFNKFK 173 (590)
Q Consensus 99 ~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~iy~~~~~~-~~~--~--~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~ 173 (590)
|.|++++|++||+||||||+|||++||+++|+++|+.|.+. +.. + ..||++|||+|||||||||+||||||++|+
T Consensus 243 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 322 (764)
T 3p5p_A 243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFK 322 (764)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhh
Confidence 57899999999999999999999999999999999988542 111 1 359999999999999999999999999999
Q ss_pred ccccccccc---cccChHHHhhHhhhcccCCCCchHHHHHHHHHHHHHhhccCC--CCChhHHHHHHHHhcCCccCCchh
Q 047877 174 DHDGNFKES---LTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAP--NLDQNLAKHINDALEQPLHMGVPR 248 (590)
Q Consensus 174 d~~G~F~~~---l~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~r 248 (590)
|++|+|+++ +.+||+|||||||||||++|||+|||||+.||++||++.+.+ .++++|+++|+|||++|||+++||
T Consensus 323 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~R 402 (764)
T 3p5p_A 323 DENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPR 402 (764)
T ss_dssp CTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHH
T ss_pred cCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchH
Confidence 999999975 589999999999999999999999999999999999987642 357889999999999999999999
Q ss_pred hhHhhhHhhccCCCc------------CCHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHhh
Q 047877 249 IEAHKFISFYEHDDS------------KNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLW 316 (590)
Q Consensus 249 lear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw 316 (590)
||||+||++|++++. +|++||||||||||+||++||+||++++||||++|+ .++||||||++|||||
T Consensus 403 lear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw 481 (764)
T 3p5p_A 403 LEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFS 481 (764)
T ss_dssp HHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHH
Confidence 999999999998865 499999999999999999999999999999999999 5999999999999999
Q ss_pred hhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHH
Q 047877 317 SVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNEL 396 (590)
Q Consensus 317 ~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~ 396 (590)
++| |||+||.+|+++||+++|++++||+||+|||+||+++||+||+|||++++++||+|||+||.+++++++|+++++
T Consensus 482 ~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~ 559 (764)
T 3p5p_A 482 SAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDV 559 (764)
T ss_dssp TCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 999 999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HH-cCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhH
Q 047877 397 AE-EGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPK 475 (590)
Q Consensus 397 ~~-~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~ 475 (590)
.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++.+++++|+.+|+|+++|+..+|+
T Consensus 560 ~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~ 638 (764)
T 3p5p_A 560 VKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSN 638 (764)
T ss_dssp HHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSH
T ss_pred HHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHH
Confidence 77 555 7899999999999999999999999999999999999999999999999999999999999999999777799
Q ss_pred HHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCHhHHHHH
Q 047877 476 IMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEY-GTSGEETAEEFKKMIADGWKDINEECMR-PTIVPMRLLNVI 553 (590)
Q Consensus 476 i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~-g~S~EeA~~~i~~mi~~~wk~ln~e~l~-~~~~p~~~~~~~ 553 (590)
|+++++.|+||+|||+||++|+++|+++|+|+|||||+ |+|+|+|+++++++|+++||+||++|++ ++++|++|++++
T Consensus 639 l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~ 718 (764)
T 3p5p_A 639 MFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFI 718 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999 7999999999999999999999999997 778999999999
Q ss_pred HHHhhhhchhcccCCCCCCchh-HHHHHHHHhccccCC
Q 047877 554 VNIARLVEVFYKKMDGVTNPEY-LKDHVTKLFIDPILV 590 (590)
Q Consensus 554 ~N~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~i 590 (590)
+|+||++++||+++||||.|+. ||++|++||++||++
T Consensus 719 ~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 719 FNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999976 999999999999974
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=2.1e-107 Score=922.10 Aligned_cols=476 Identities=21% Similarity=0.300 Sum_probs=401.0
Q ss_pred CCCCCCCCCCCCCCcCCCcch-----hhhHHHHHHHHHHHHHHHHhhc----CCCcccchhHhHHHhhhCcccccHHHHH
Q 047877 56 PLGNFRPTIWKDGSISSPVLE-----VETYDKLNEEMKDHVKEMLVAS----RNDPVEEVVLINLLCRLGVSYHFENEIE 126 (590)
Q Consensus 56 ~~~~~~ps~W~~~fl~~~~~~-----~~~~~~~~e~lk~~vr~~l~~~----~~~~~~~l~lID~lqrLGi~~hFe~EI~ 126 (590)
++..+++. +-.|+.||... .....+..+-|+..|+++.... |.|++++|++||+||||||+|||++||+
T Consensus 192 ~~~~~q~~--~GS~~~SPsaTAa~l~~~~d~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~ 269 (727)
T 3pya_A 192 KLLKLQSQ--DGSFLFSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIK 269 (727)
T ss_dssp HHGGGCCT--TSSBTTBHHHHHHHHHHHCCHHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred HHhcccCC--CCCcccCHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHH
Confidence 34456654 44455542111 2223566778999998875432 5789999999999999999999999999
Q ss_pred HHHHHHHhhCCcccc--C---CCCChhhHHHHHHHhhhcCccccccccccccccccccccc---cccChHHHhhHhhhcc
Q 047877 127 ERLNHIFEMQPDLAA--E---KDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKES---LTSDARGMLSLYEATH 198 (590)
Q Consensus 127 ~~L~~iy~~~~~~~~--~---~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G~F~~~---l~~dv~glL~LYeAs~ 198 (590)
++|+++|+.|.+.+. . ...||++|||+|||||||||+||||||++|+ ++|+|++. +.+|++|||+||||||
T Consensus 270 ~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~ 348 (727)
T 3pya_A 270 ECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQ 348 (727)
T ss_dssp HHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHH
Confidence 999999998843211 1 1359999999999999999999999999999 88999954 3689999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHhhccCC-C------CChhHHHHHHHHhcCCccCCchhhhHhhhHhhccCCCc--------
Q 047877 199 LRVHGEDILEEALTFTTAHLKSMAAP-N------LDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDS-------- 263 (590)
Q Consensus 199 l~~~gE~iLdea~~ft~~~L~~~~~~-~------~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~-------- 263 (590)
+++|||+|||||+.||++||++.+.+ . ++++|+++|+|||++|||+++||+|||+||++|+++++
T Consensus 349 l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~y 428 (727)
T 3pya_A 349 LAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLY 428 (727)
T ss_dssp TCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEE
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhc
Confidence 99999999999999999999987532 2 24789999999999999999999999999999997654
Q ss_pred -----CCHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHH
Q 047877 264 -----KNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYL 338 (590)
Q Consensus 264 -----~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~ 338 (590)
+|++||||||||||+||++||+||++++||||++|| .+|||||||++|||||++|++|||+||.+|+++||+++
T Consensus 429 r~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~ 507 (727)
T 3pya_A 429 RMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSV 507 (727)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999 46999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCCHHHHHHHHHhhhhcCcc---------cccC---CCCc--hHHHHHHHHHHHHHHHHHHHHcCCCch
Q 047877 339 LLLIIDDTYDAYGTFGELQRFTDAVERWDIN---------CVSE---LPEY--MKPLYGALLNLFDELNNELAEEGRSYS 404 (590)
Q Consensus 339 l~~viDD~fD~ygt~eEl~~ft~averWD~~---------~~~~---lPey--mk~~~~al~~t~~ei~~~~~~~~~~~~ 404 (590)
+++++||+||+|| |||++||+||+|||.+ +.+. +|+| ||+||.+|++|+||++.++.+++|.++
T Consensus 508 l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v 585 (727)
T 3pya_A 508 LVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDV 585 (727)
T ss_dssp HHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 9999999999999 9999999999999974 3333 3877 999999999999999987777656678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhh
Q 047877 405 VSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLS 484 (590)
Q Consensus 405 ~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~ 484 (590)
.+|++++|.++++++++||+ + +| |. +++..+.+..|..+++ ++.. +.+..|.++++.||
T Consensus 586 ~~~l~~~W~~~l~s~~~Ea~-~--------~E---------Ae-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~ic 644 (727)
T 3pya_A 586 NNLLYLSWGDWMEKWKLYGD-E--------GE---------GE-LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRIC 644 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-C--------CH---------HH-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcc-c--------cc---------ee-eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHh
Confidence 99999999999999999998 2 33 11 3344444444888888 6665 66778999999999
Q ss_pred hhhcCcccchhhhhcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHhHHHHHHHHhhhhch
Q 047877 485 RLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPT--IVPMRLLNVIVNIARLVEV 562 (590)
Q Consensus 485 RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~e~l~~~--~~p~~~~~~~~N~aR~~~~ 562 (590)
||+||+.+|++|+ .+++.+.|+..|++|++.+++++ .+|++| |+.++++.
T Consensus 645 rllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ks 696 (727)
T 3pya_A 645 LPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKA 696 (727)
T ss_dssp CCCC------CHH-----------------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHH
T ss_pred HHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHH
Confidence 9999999999977 55789999999999999999854 699999 88888999
Q ss_pred hcccCCCCCCchhHHHHHHHHhccccC
Q 047877 563 FYKKMDGVTNPEYLKDHVTKLFIDPIL 589 (590)
Q Consensus 563 ~Y~~~Dg~t~~~~~k~~i~~ll~~pi~ 589 (590)
||.. ||+.|+ |+.+|.++|++|+-
T Consensus 697 FYy~--ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 697 FYYF--ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HHHH--HHHTTS-CHHHHHHHHHSCCC
T ss_pred HHhh--hcCCHH-HHHHHHHHHcCccc
Confidence 9986 999998 99999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.9e-51 Score=431.35 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=228.5
Q ss_pred HhhhhHHHHHHH-HHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhH-HHHHHHHHHHHhhhhcccC--CCHH
Q 047877 279 VQLLHQQELAYI-TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRI-IFTKIYLLLLIIDDTYDAY--GTFG 354 (590)
Q Consensus 279 ~Q~~hq~El~~l-srWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri-~laK~~~l~~viDD~fD~y--gt~e 354 (590)
-...|.+|+++. ++||+++|+.+ .||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||++
T Consensus 14 ~~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~e 92 (337)
T 1ps1_A 14 RQSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPE 92 (337)
T ss_dssp CCCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHH
Confidence 356788898877 45999999964 69999999999999999999999999999 9999999999999999998 6999
Q ss_pred HHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCC-C
Q 047877 355 ELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVP-P 433 (590)
Q Consensus 355 El~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iP-t 433 (590)
|++.|++++.+|+.+ .+|+++++++.++.+++++++.... .....+++++|++|++++++||+|+.+|++| |
T Consensus 93 e~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s 165 (337)
T 1ps1_A 93 DTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMT----PAWCARSARHWRNYFDGYVDEAESRFWNAPCDS 165 (337)
T ss_dssp HHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999864 4799999999999999999976532 3457899999999999999999999999999 9
Q ss_pred hHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhcc
Q 047877 434 FDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEY 513 (590)
Q Consensus 434 leEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~ 513 (590)
++|||++|++|+|++++++++++++|..+|+++++. +..++|+++++.++||+|||+||+||+++|+++|+|.|||+++
T Consensus 166 ~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 166 AAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHc
Confidence 999999999999999999999999999999988776 4556999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Q 047877 514 GTSGEETAEEFKKMIADGWKDINEEC 539 (590)
Q Consensus 514 g~S~EeA~~~i~~mi~~~wk~ln~e~ 539 (590)
|+|+|+|++++.++|+++||++|++.
T Consensus 245 g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 245 GWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=1e-49 Score=410.99 Aligned_cols=243 Identities=13% Similarity=0.068 Sum_probs=224.6
Q ss_pred hhhHHHHHHHHH-HHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhH-HHHHHHHHHHHhhhhcccCCCHHHHHH
Q 047877 281 LLHQQELAYITR-WMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRI-IFTKIYLLLLIIDDTYDAYGTFGELQR 358 (590)
Q Consensus 281 ~~hq~El~~lsr-Wwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri-~laK~~~l~~viDD~fD~ygt~eEl~~ 358 (590)
..|.+|+++..+ ||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.
T Consensus 12 ~P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~ 89 (300)
T 1di1_A 12 HPRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEA 89 (300)
T ss_dssp CTTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHH
Confidence 568889998855 77999996 579999999999999999999999999999 999999999999999999 78999999
Q ss_pred HHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhh
Q 047877 359 FTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERM 438 (590)
Q Consensus 359 ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl 438 (590)
|++++.||+.+ +.+|+||++++.++++++++++..+. .+.++.|+.++++|+ ||+|+..|++||++|||
T Consensus 90 ~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl 158 (300)
T 1di1_A 90 YNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYL 158 (300)
T ss_dssp HHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHH
T ss_pred HHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHH
Confidence 99999999765 47899999999999999999987652 346777999999997 89999999999999999
Q ss_pred hhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCC--------ccchhhhhh
Q 047877 439 SNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGH--------VASVVESYM 510 (590)
Q Consensus 439 ~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~--------~~n~V~cyM 510 (590)
++|++|+|++++++++++++|..+|+++++ ..|+|+++++.++||+|||+||+||+++|+ ++|+|.|||
T Consensus 159 ~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 159 EYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 999999999999999999999999999998 369999999999999999999999999999 779999999
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 047877 511 KEYGTSGEETAEEFKKMIADGWKDINEEC 539 (590)
Q Consensus 511 ke~g~S~EeA~~~i~~mi~~~wk~ln~e~ 539 (590)
+++|+|+|+|++++.++|+++||++|+..
T Consensus 236 ~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 236 EESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=2.1e-48 Score=405.31 Aligned_cols=248 Identities=12% Similarity=0.077 Sum_probs=223.5
Q ss_pred hHHHhhhhHHHHHHHHH-HHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhH-HHHHHHHHHHHhhhhcccCCCH
Q 047877 276 FNRVQLLHQQELAYITR-WMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRI-IFTKIYLLLLIIDDTYDAYGTF 353 (590)
Q Consensus 276 Fn~~Q~~hq~El~~lsr-Wwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri-~laK~~~l~~viDD~fD~ygt~ 353 (590)
|..-..+|.+|+++.+. ||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |++
T Consensus 21 ~p~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~ 98 (320)
T 3bny_A 21 FQPLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSF 98 (320)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CCh
Confidence 33445678889998855 7799999755 9999999999999999999999999999 999999999999999999 889
Q ss_pred HHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 047877 354 GELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPP 433 (590)
Q Consensus 354 eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPt 433 (590)
+|++.|++++.+|+.+ +.+|++|++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||
T Consensus 99 ~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps 167 (320)
T 3bny_A 99 EEGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMG 167 (320)
T ss_dssp HHHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCC
T ss_pred hhHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCC
Confidence 9999999999999864 4689999999999999999998664 2 24456677777 5999999999999999
Q ss_pred hHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCC--------ccch
Q 047877 434 FDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGH--------VASV 505 (590)
Q Consensus 434 leEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~--------~~n~ 505 (590)
++|||++|++|+|++++++++++++|..+|+++++. .|+|+++++.++||+|||+||+||+++|+ ++|+
T Consensus 168 ~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~ 244 (320)
T 3bny_A 168 LGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTS 244 (320)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccch
Confidence 999999999999999999999999999999999983 69999999999999999999999999998 7899
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 047877 506 VESYMKEYGTSGEETAEEFKKMIADGWKDINEEC 539 (590)
Q Consensus 506 V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~e~ 539 (590)
|.|||+++|+|+|+|++++.++|++.|+++|+..
T Consensus 245 V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 245 VQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=4.7e-46 Score=398.24 Aligned_cols=248 Identities=12% Similarity=0.030 Sum_probs=225.3
Q ss_pred HHHHHH-HHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhH-HHHHHHHHHHHhhhhccc--CC-CHHHHHH
Q 047877 284 QQELAY-ITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRI-IFTKIYLLLLIIDDTYDA--YG-TFGELQR 358 (590)
Q Consensus 284 q~El~~-lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri-~laK~~~l~~viDD~fD~--yg-t~eEl~~ 358 (590)
-++++. +.+||+++|+. ..+++|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.
T Consensus 59 ~~~v~~~~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~ 137 (382)
T 3kb9_A 59 WPKLQETTRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRR 137 (382)
T ss_dssp HHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHH
Confidence 334443 46699999995 447899999999999999999999999999 999999999999999996 66 9999999
Q ss_pred HHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhh
Q 047877 359 FTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERM 438 (590)
Q Consensus 359 ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl 438 (590)
|++++.++-.. ...+|+++++++.++.+++++++..+.+ ....+++++|++++++|++||+|+.+|++||++|||
T Consensus 138 ~~~~l~~~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl 212 (382)
T 3kb9_A 138 LRGLLHTALDS-PGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYL 212 (382)
T ss_dssp HHHHHHHHHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHhcC-CCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 99999987211 2336889999999999999999754433 247899999999999999999999999999999999
Q ss_pred hhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHH
Q 047877 439 SNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGE 518 (590)
Q Consensus 439 ~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~E 518 (590)
++|++|+|++++++++++++|..+|++++++ +..++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|
T Consensus 213 ~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~e 291 (382)
T 3kb9_A 213 ELRRLTFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLE 291 (382)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHH
T ss_pred HHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999987 667889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047877 519 ETAEEFKKMIADGWKDINEE 538 (590)
Q Consensus 519 eA~~~i~~mi~~~wk~ln~e 538 (590)
+|++++.+||+++||++|+.
T Consensus 292 eA~~~v~~~i~~~~k~~~~~ 311 (382)
T 3kb9_A 292 EAIGEVRRRVEECITEFLAV 311 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=6.5e-33 Score=300.26 Aligned_cols=247 Identities=11% Similarity=0.056 Sum_probs=190.0
Q ss_pred hHHHHHHH-HHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCC-cchhH-HHHHHHHHHHHhhhh-cccCC-CHHHH-
Q 047877 283 HQQELAYI-TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHF-SRGRI-IFTKIYLLLLIIDDT-YDAYG-TFGEL- 356 (590)
Q Consensus 283 hq~El~~l-srWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~-s~~Ri-~laK~~~l~~viDD~-fD~yg-t~eEl- 356 (590)
|-+|++.- ..|..++++... +-.|+++..+-|-.++.+..|.. +..|+ .++|+++|+|++||. +|..| +.+.+
T Consensus 127 ~~~ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~ 205 (433)
T 3v1v_A 127 RVEEVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLG 205 (433)
T ss_dssp HHHHHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhH
Confidence 34466654 559999876433 33577777775544444445999 79999 999999999999999 59855 33321
Q ss_pred HHHHH---hhhhcCcccccC-------CCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 047877 357 QRFTD---AVERWDINCVSE-------LPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWF 426 (590)
Q Consensus 357 ~~ft~---averWD~~~~~~-------lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~ 426 (590)
..+.. ++..... ..+. .++ ..+-.+++++++++...+.+ ....+++++|++|+++|++||+|+
T Consensus 206 ~~l~~a~~~~d~l~~-~~~g~p~~~~~~~~--dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~ 278 (433)
T 3v1v_A 206 GRLLLAHTAIDHFHS-TAEYTPTWQASLAA--DAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWA 278 (433)
T ss_dssp HHHHHHHTTTSCCCC-CTTTHHHHHHHTTS--SHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhc-ccCCCCccccccCC--chHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 2222110 0000 011 24578999999999765444 358899999999999999999999
Q ss_pred hCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcC-Cccch
Q 047877 427 REGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERG-HVASV 505 (590)
Q Consensus 427 ~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG-~~~n~ 505 (590)
..|++||+||||++|++| |+.+++.++.+++|..+|++++++ +...+|+++++.++||+|||+||+||+++| +++|+
T Consensus 279 ~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~ 356 (433)
T 3v1v_A 279 QTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNL 356 (433)
T ss_dssp HHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCH
T ss_pred hcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcH
Confidence 999999999999999999 777777778899999999999887 556789999999999999999999999995 78899
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 047877 506 VESYMKEYGTSGEETAEEFKKMIADGWKDINEEC 539 (590)
Q Consensus 506 V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~e~ 539 (590)
|.|||+++|+|+|+|++++.+||+++++++.+..
T Consensus 357 V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 357 PVVIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987653
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.74 E-value=5.8e-18 Score=179.90 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=178.2
Q ss_pred HHHHHHHhhcC------------CCCCCchhhhHHHHHHhhhhccccCCCCcchhH-HHHHHHHHHHHhhhhcccCCCHH
Q 047877 288 AYITRWMKGLN------------FGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRI-IFTKIYLLLLIIDDTYDAYGTFG 354 (590)
Q Consensus 288 ~~lsrWwk~~~------------l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri-~laK~~~l~~viDD~fD~ygt~e 354 (590)
.+..+|..+.| +. --+-..++++.+=.|.++..| |+.+...+ .++++.+|+|++||++|..+ +
T Consensus 33 ~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~ 108 (374)
T 1yyq_A 33 IENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--P 108 (374)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--H
T ss_pred HHHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--H
Confidence 34457998888 52 233456777777777666555 99999998 99999999999999999654 6
Q ss_pred HHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCCh
Q 047877 355 ELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPF 434 (590)
Q Consensus 355 El~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtl 434 (590)
++..|.+.+-+ ... |+ .++..++.+.+.++... .++.+..++.++|.+++.+++.|+.. .+..|+.
T Consensus 109 ~l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~rl~~~----~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~ 174 (374)
T 1yyq_A 109 TMVNYFDDLQA--GRE----QA--HPWWALVNEHFPNVLRH----FGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGS 174 (374)
T ss_dssp HHTTHHHHHHH--TCC----CS--SHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTC
T ss_pred HHHHHHHHHhc--CCC----CC--ChHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCH
Confidence 67777776554 111 11 15667777777776433 34456888999999999999999873 6778999
Q ss_pred HHhhhhcccccccchHHHHHHHhcCCCcchhHHH-h--hhchhHHHHHHhhhhhhhcCcccchhhhhc-CCccchhhhhh
Q 047877 435 DERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYE-W--LRSQPKIMTASFTLSRLIADLVSNKAEQER-GHVASVVESYM 510 (590)
Q Consensus 435 eEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e-~--~~~~p~i~~~~~~i~RL~NDI~S~kkE~~r-G~~~n~V~cyM 510 (590)
++|...++.++|+.-.... -.+|+..+. . .+.+...+.....++.|+|||.||.||... |+.+|+|.+++
T Consensus 175 ~~Y~~~rR~~sG~~E~~~~------~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~ 248 (374)
T 1yyq_A 175 HDYPQFLRRMNGLGHCVGA------SLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYV 248 (374)
T ss_dssp TTHHHHHHHHHHCHHHHHH------TTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHH------hhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhheh
Confidence 9999998888887533322 223443331 1 122346666777799999999999999984 99999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhhh
Q 047877 511 KEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARL 559 (590)
Q Consensus 511 ke~g~S~EeA~~~i~~mi~~~wk~ln~e~l~~~~~p~~~~~~~~N~aR~ 559 (590)
.++|+|.++|++++..++..+..++.. .+. ...|. +++.+-+..|-
T Consensus 249 ~~~g~S~~eAl~~v~~~~~~~~~r~~~-~L~-~~~~~-~l~al~~~irG 294 (374)
T 1yyq_A 249 VSDEISLHEALEKLTQDTLHSSKQMVA-VFS-DKDPQ-VMDTIECFMHG 294 (374)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHH-HHS-SSCHH-HHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHH-Hhc-cCCHH-HHHHHHHHHhH
Confidence 999999999999999999999888855 332 22332 44555444443
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.90 E-value=0.0002 Score=82.95 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=27.9
Q ss_pred CCCCCCCCCCCCCCCCCcCC-C-cchhhhHHHHHHHHHHHHHHHHh
Q 047877 53 NDRPLGNFRPTIWKDGSISS-P-VLEVETYDKLNEEMKDHVKEMLV 96 (590)
Q Consensus 53 ~~r~~~~~~ps~W~~~fl~~-~-~~~~~~~~~~~e~lk~~vr~~l~ 96 (590)
+.||+|||+||+|+++||++ + +...+.+.+++++||++||+||.
T Consensus 23 ~~Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 23 LIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp ------------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhc
Confidence 47999999999999999998 4 33567889999999999999997
No 18
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=79.47 E-value=53 Score=32.74 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=97.7
Q ss_pred chhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhc-Ccccc--cCCCCchHHHHHHHHHHHHHHHHHHHHcCCCch
Q 047877 328 RGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERW-DINCV--SELPEYMKPLYGALLNLFDELNNELAEEGRSYS 404 (590)
Q Consensus 328 ~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averW-D~~~~--~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~ 404 (590)
..|-.+.-+-.|.-.+||+=|......+|+.+-+.+++- +.... ...|+ .++..++..++.+. +. .
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~--------~l-~ 106 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHK--------NI-A 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHS--------CC-C
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHh--------CC-C
Confidence 456666777788888999999766544466665555441 11110 00022 36777777765443 21 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhh
Q 047877 405 VSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLS 484 (590)
Q Consensus 405 ~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~ 484 (590)
++.+.+++.++-. +......+|++|+......+.|+--.+++-.++..+ .++..+.. ..+-.+.. ++
T Consensus 107 ----~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~~A---~~lG~AlQ-lt 173 (293)
T 3acx_A 107 ----FQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYDVA---RRLGESLQ-LI 173 (293)
T ss_dssp ----HHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHHHH---HHHHHHHH-HH
T ss_pred ----HHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHHHH---HHHHHHHH-HH
Confidence 3445667777743 334456789998888887777765555544443321 12222211 11222221 22
Q ss_pred hhhcCcccchhhhhcCCccchhhhhhhccCCCHHH---------HHHHHHHHHHHHHHHHHHH
Q 047877 485 RLIADLVSNKAEQERGHVASVVESYMKEYGTSGEE---------TAEEFKKMIADGWKDINEE 538 (590)
Q Consensus 485 RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~Ee---------A~~~i~~mi~~~wk~ln~e 538 (590)
-++-|+. ....+|-+- +=.=-|.++|+|.++ ..+-+..++..+...+.+.
T Consensus 174 NilRDv~---eD~~~gR~Y-LP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a 232 (293)
T 3acx_A 174 NILRDVG---EDFENERIY-FSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDV 232 (293)
T ss_dssp HHHHCHH---HHHHTTCCC-SCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHhCCcEE-eCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2344553 334566431 111235678998776 2345566666666665543
No 19
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=72.91 E-value=12 Score=38.93 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHH--HhcCCCcchhHHHhhhchhHHHHHH
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAY--IGLGDIAGIDAYEWLRSQPKIMTAS 480 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~i~~~~ 480 (590)
..+..+.+++..++.+-..+..|...+ ||.++|++.-..-+|.......-. +..| .+++..+. .-++-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~---l~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDA---LKNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 356778888999999999999997655 999999988655555443322211 1123 34554443 24677788
Q ss_pred hhhhhhhcCcccch
Q 047877 481 FTLSRLIADLVSNK 494 (590)
Q Consensus 481 ~~i~RL~NDI~S~k 494 (590)
++..-+.||+..+.
T Consensus 233 G~aFQI~DDilD~~ 246 (360)
T 3lmd_A 233 GMIFQIVDDIIDIF 246 (360)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc
Confidence 88888899987764
No 20
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=67.77 E-value=22 Score=35.96 Aligned_cols=141 Identities=11% Similarity=0.034 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHh
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASF 481 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~ 481 (590)
.+..+.++...++.+-..+..|... .||.++|++.-..-+|.....+ ...| ++ ..+++..+. .-++-+..+
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~la-g~~~~~~~~---l~~~g~~lG 200 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTG-GAEEELAER---FSHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 4566677778888998888888654 3899999987655555443222 1222 12 234544443 346777888
Q ss_pred hhhhhhcCcccchhhh-----hcCCccchhhhhhhccCC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH-hHHHHH
Q 047877 482 TLSRLIADLVSNKAEQ-----ERGHVASVVESYMKEYGT--SGEETAEEFKKMIADGWKDINEECMRPTIVPM-RLLNVI 553 (590)
Q Consensus 482 ~i~RL~NDI~S~kkE~-----~rG~~~n~V~cyMke~g~--S~EeA~~~i~~mi~~~wk~ln~e~l~~~~~p~-~~~~~~ 553 (590)
+..-+.||+..+.... ..|. .+...+|..+.+- ..+.|.+.+.+.++++.+.+. .+|. +-++..
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~-------~lp~~~~~~~L 272 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE-------TFRECPARDKL 272 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT-------TSCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-------hCCCchHHHHH
Confidence 8889999988875433 2233 2566666554421 145555555555555555443 2443 344555
Q ss_pred HHHhhh
Q 047877 554 VNIARL 559 (590)
Q Consensus 554 ~N~aR~ 559 (590)
.++++.
T Consensus 273 ~~l~~~ 278 (295)
T 3ipi_A 273 FQITDY 278 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 21
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=64.97 E-value=1.2e+02 Score=30.31 Aligned_cols=187 Identities=13% Similarity=0.140 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHhhhhcccCCC--HHHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHH
Q 047877 329 GRIIFTKIYLLLLIIDDTYDAYGT--FGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVS 406 (590)
Q Consensus 329 ~Ri~laK~~~l~~viDD~fD~ygt--~eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~ 406 (590)
.|-.+.-+-.|.=.+||+-|.... ...|+.+-+.+++-- ..-|.. +++.+|..++.+.. . .
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~----~g~~~~--pv~~al~~~~~~~~--------l-~-- 102 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAF----AGEATT--PAFRALQFTIATCN--------L-P-- 102 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHH----HTCCCS--HHHHHHHHHHHHHT--------C-C--
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHcC--------C-C--
Confidence 444445666777789999996442 233444444444320 111222 67788877765541 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhh
Q 047877 407 FTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRL 486 (590)
Q Consensus 407 ~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL 486 (590)
++.+.+++.++..... ....+|++|+......+.|+--.+++-.+ |.. +++..... ..+-.+. -++-+
T Consensus 103 --~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~-~~~~~~~A---~~lG~Al-QltNi 170 (294)
T 4hd1_A 103 --MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL-DDERARLS---DATCTAL-QVANH 170 (294)
T ss_dssp --SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC-SHHHHHHH---HHHHHHH-HHHHH
T ss_pred --HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC-CHHHHHHH---HHHHHHH-HHHHH
Confidence 2345567777754433 34568988888877776665444444334 322 22222221 1121111 13333
Q ss_pred hcCcccchhhhhcCCc--cchhhhhhhccCCCHHHH---------HHHHHHHHHHHHHHHHHHhcCCCCCCHhHH
Q 047877 487 IADLVSNKAEQERGHV--ASVVESYMKEYGTSGEET---------AEEFKKMIADGWKDINEECMRPTIVPMRLL 550 (590)
Q Consensus 487 ~NDI~S~kkE~~rG~~--~n~V~cyMke~g~S~EeA---------~~~i~~mi~~~wk~ln~e~l~~~~~p~~~~ 550 (590)
+-|+. ...++|-+ +. -.|.++|+|.++- ..-+..+++.+..-+.+..--...+|..+.
T Consensus 171 lRDv~---eD~~~gR~YlP~---~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r 239 (294)
T 4hd1_A 171 MQDID---RDLALGRIYVPR---ADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLA 239 (294)
T ss_dssp HHTHH---HHHHTTCBCSCH---HHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHH
T ss_pred HHhch---hhhccCceeCCH---HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 34543 34456653 22 3467889988752 233444444444333332211234776544
No 22
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=58.39 E-value=61 Score=32.46 Aligned_cols=120 Identities=8% Similarity=-0.044 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHH--HhcCCCcchhHHHhhhchhHHHHHHh
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAY--IGLGDIAGIDAYEWLRSQPKIMTASF 481 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~i~~~~~ 481 (590)
.+..+.++...++.+-..+..|......||.++|+..-..-+|......... +..|. +++ ..-++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~--~~~------~l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGX--DHT------XMXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--Chh------HHHHHHHHHH
Confidence 4666777778899999999999865447899999998665555443222111 12232 333 1246777888
Q ss_pred hhhhhhcCcccchhhh-hcCC-----c--cchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 482 TLSRLIADLVSNKAEQ-ERGH-----V--ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 482 ~i~RL~NDI~S~kkE~-~rG~-----~--~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
+..-+.||+..+.-.. ..|+ . .+...+| ..|.|.+.+.+.++.+.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999998886532 2333 1 2333333 2688899999999999988765
No 23
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=56.45 E-value=78 Score=32.49 Aligned_cols=87 Identities=10% Similarity=0.010 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHH
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTAS 480 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~ 480 (590)
.....+.++...++.+-+.+..|.. +..||.++|++.-..-+|....... ..| ++ ..+++..+. .-.+....
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~la-g~~~~~~~~---l~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAAT-EVGGIIG-GAPEDQVQA---LFDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHH
Confidence 4566777888899999999999864 3468999999876555554432221 221 11 234444443 34677788
Q ss_pred hhhhhhhcCcccchh
Q 047877 481 FTLSRLIADLVSNKA 495 (590)
Q Consensus 481 ~~i~RL~NDI~S~kk 495 (590)
++..-+.||+..+.-
T Consensus 213 G~aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 213 GIAFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhccC
Confidence 888888999877643
No 24
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=55.33 E-value=56 Score=33.69 Aligned_cols=87 Identities=6% Similarity=-0.101 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHH
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTAS 480 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~ 480 (590)
..+..+.++...++.+-+.+..|.. +.-||.++|++.-..-+|...... ...| ++ ..+++..+. .-++-+..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~---l~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSA-GVDVAKSEA---LRDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHH
Confidence 4566778888899999998888854 345899999988666555543322 2222 12 235554443 34677888
Q ss_pred hhhhhhhcCcccchh
Q 047877 481 FTLSRLIADLVSNKA 495 (590)
Q Consensus 481 ~~i~RL~NDI~S~kk 495 (590)
++..-+.||+..+..
T Consensus 225 G~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 225 GLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 888999999988754
No 25
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=53.98 E-value=26 Score=35.42 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHH--HHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCc
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAA--YIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADL 490 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~--~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 490 (590)
..++.+-..+..|...+..||.++|+..-..-+|........ -+..| .+++. .-++....++..-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~~------l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRGP------LTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCHH------HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHHH------HHHHHHHHHHHHHHHHHH
Confidence 457778888888976577899999999754444433222111 11123 23331 246777888888999999
Q ss_pred ccchhhh-hcCC-----c----cchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 047877 491 VSNKAEQ-ERGH-----V----ASVVESYMKEYGTSGEETAEEFKKMIADGWKDIN 536 (590)
Q Consensus 491 ~S~kkE~-~rG~-----~----~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln 536 (590)
..+.-+. .-|+ . .+.+.+| | .|.|.+...+.++++...+.
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~----~--l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKATFVSLL----G--LAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp C---------------------CCHHHHH----C--SSHHHHHHHHHHHHHHHHTG
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH----H--HHHHHHHHHHHHHHHHHHHH
Confidence 8875432 2222 1 1444333 3 47788888888888887664
No 26
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=53.32 E-value=1.5e+02 Score=30.14 Aligned_cols=87 Identities=3% Similarity=-0.034 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHH--HhcCCCcchhHHHhhhchhHHHHHH
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAY--IGLGDIAGIDAYEWLRSQPKIMTAS 480 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~i~~~~ 480 (590)
.....+.++...++.+-..+..|.. +..||.++|+..-..-+|.....+... +..| .+++..+. .-.+....
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4567788888999999999998864 335899999988666555543322211 1122 34544443 34677788
Q ss_pred hhhhhhhcCcccchh
Q 047877 481 FTLSRLIADLVSNKA 495 (590)
Q Consensus 481 ~~i~RL~NDI~S~kk 495 (590)
+...-+.||+..+..
T Consensus 207 G~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 207 GICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhccCCC
Confidence 888889999887753
No 27
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=52.78 E-value=52 Score=33.66 Aligned_cols=111 Identities=6% Similarity=0.056 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHhhhhhhhcCc
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASFTLSRLIADL 490 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 490 (590)
..++.+-..+..|... .||.++|+..-..-+|...... ...| ++...+++..+.+ -++-+..++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777787543 7899999998544444332222 2222 2222455554432 46777788888899998
Q ss_pred ccchhh-----------hhcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 047877 491 VSNKAE-----------QERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDIN 536 (590)
Q Consensus 491 ~S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln 536 (590)
..+..+ ...|.. +.+.+| ..|.|.+...+.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 776432 122332 455444 368888888888887776553
No 28
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=52.68 E-value=36 Score=34.35 Aligned_cols=112 Identities=10% Similarity=0.020 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHH--HhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCc
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAY--IGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADL 490 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 490 (590)
..++.+-..+..|... .+|.++|+..-..-+|......... +..| .+++..+.+ -++-...++..-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577777778887543 7899999998665555443222211 1123 455555443 46778888899999999
Q ss_pred ccchhhh-hcCC-----c----cchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 491 VSNKAEQ-ERGH-----V----ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 491 ~S~kkE~-~rG~-----~----~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
..+.-.. .-|+ . .+.+.+|- .+.|.+.+.+.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKSTYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 1222 1 24444432 578888888888888877654
No 29
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=52.67 E-value=50 Score=33.41 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhc-ccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHhhhhhhhcC
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNA-IVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASFTLSRLIAD 489 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~-~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 489 (590)
..++.+-..+..|.. ..||.++|...- ..|++. .... ...| ++ ..+++..+. .-++-+..++..-+.||
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L-~~~~-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DD 227 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGAL-IEFA-LIAGGVLA-NQTEEVIGL---LTQFAHHYGLAFQIRDD 227 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHH-HHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 346677777777753 468999999874 555543 2222 1121 12 234544443 34677788888889999
Q ss_pred cccchhh-----------hhcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 490 LVSNKAE-----------QERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 490 I~S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
+..+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.++.
T Consensus 228 ilD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 228 LLDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8776432 222222 444333 3689999999999999888765
No 30
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=50.77 E-value=37 Score=34.38 Aligned_cols=111 Identities=10% Similarity=0.056 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhcc-cccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHhhhhhhhcC
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNAI-VTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASFTLSRLIAD 489 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~-~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 489 (590)
..++.+-..+..|. +..||.++|+..-. .|++. .... ...| ++...+++..+. .-++.+..++..-+.||
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L-~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DD 230 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGAL-MRCA-IRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDD 230 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHH-HHHH-HHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHH-HHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 35677888888886 45789999999854 45443 2222 2222 222123333333 34677788888889999
Q ss_pred cccchhhh-----------hcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 490 LVSNKAEQ-----------ERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 490 I~S~kkE~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
+..+.-+. ..|.. +...+| ..+.|.+.+.+.++++.+.++.
T Consensus 231 ilD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 231 ILDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 87764321 22222 444444 2688888888888888877643
No 31
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=48.71 E-value=50 Score=33.40 Aligned_cols=109 Identities=8% Similarity=0.000 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhCCCCCChHHhhhhc-ccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcc
Q 047877 415 VVRAYFVEAQWFREGYVPPFDERMSNA-IVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLV 491 (590)
Q Consensus 415 ~~~a~l~EAkW~~~g~iPtleEYl~~~-~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~ 491 (590)
++.+-..+..|... .||.++|+..- ..|++. .... ...| ++...+++..+. .-++-...++..-+.||+.
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L-~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lGlaFQI~DDil 226 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGAL-IEAS-VILGALASGRAEKGELKA---LQTYAQAIGLAFQVQDDIL 226 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHH-HHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 67777777777643 48999999884 455443 2222 1222 222214544443 2467778888889999998
Q ss_pred cchhhh-hcCC-----c----cchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 047877 492 SNKAEQ-ERGH-----V----ASVVESYMKEYGTSGEETAEEFKKMIADGWKDIN 536 (590)
Q Consensus 492 S~kkE~-~rG~-----~----~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln 536 (590)
.+.-+. .-|+ . .+.+.+| ..|.|.+...+.++++.+.++
T Consensus 227 D~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 227 DVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 875432 2222 1 2444443 368888888888888876654
No 32
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=47.57 E-value=59 Score=33.29 Aligned_cols=85 Identities=6% Similarity=-0.053 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHH--HhcCCCcchhHHHhhhchhHHHHHHh
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAY--IGLGDIAGIDAYEWLRSQPKIMTASF 481 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~i~~~~~ 481 (590)
.+..+.++...++.+-..+..|.... ..|.++|++.-..-+|......... +..| .+++..+. .-++....+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKA---LSSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 45667777888999999999997643 4599999998665555443332211 1123 35554443 346778888
Q ss_pred hhhhhhcCcccch
Q 047877 482 TLSRLIADLVSNK 494 (590)
Q Consensus 482 ~i~RL~NDI~S~k 494 (590)
+..-+.||+..+.
T Consensus 212 ~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 212 IAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8899999988774
No 33
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=42.66 E-value=54 Score=33.69 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHH--HhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCc
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAY--IGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADL 490 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~--~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 490 (590)
..++.+-..+..|... .+|.++|+..-..-+|......... +..| .+++..+. .-++-...++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5577788888888764 6899999998666555443222111 1223 35555444 346777888888999998
Q ss_pred ccchhhh-----------hcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 491 VSNKAEQ-----------ERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 491 ~S~kkE~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
..+.-+. ..|. .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGK-GTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7764321 1222 2444443 2588888888888888877643
No 34
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=42.42 E-value=82 Score=31.96 Aligned_cols=112 Identities=9% Similarity=0.001 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhcc-cccccchHHHHHHHhcCCC-cchhHHHhhhchhHHHHHHhhhhhhhcCc
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNAI-VTGTCFLDPAAAYIGLGDI-AGIDAYEWLRSQPKIMTASFTLSRLIADL 490 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~-~Ssg~~~~~~~~~~~~g~~-l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 490 (590)
..++.+-..+..|... ..||.++|+..-. .|++...+.+.. ..++.. .+++..+.+ -++-...++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3567777777887543 3789999998754 555543333333 233332 556555543 46777888888899998
Q ss_pred ccchhhh-----------hcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 047877 491 VSNKAEQ-----------ERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDIN 536 (590)
Q Consensus 491 ~S~kkE~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln 536 (590)
..+.-+. ..|.. +.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8764321 22222 444443 368888888888888876653
No 35
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=41.83 E-value=61 Score=33.02 Aligned_cols=110 Identities=10% Similarity=0.069 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHhhhhcc-cccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHhhhhhhhcCc
Q 047877 414 GVVRAYFVEAQWFREGYVPPFDERMSNAI-VTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASFTLSRLIADL 490 (590)
Q Consensus 414 ~~~~a~l~EAkW~~~g~iPtleEYl~~~~-~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 490 (590)
.++.+-..+..|. +..||.++|+..-. .|++. .... ...| ++...+++..+. .-++-+..++..-+.||+
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L-~~~a-~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDi 224 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGAL-IKAS-VRMGALSTGQVKPEQLAK---LDAYAHAIGLAFQVQDDI 224 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHH-HHHH-HHHHHHTTTCCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHH-HHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4667777777775 44589999998854 45443 2222 2222 222245554443 246777888888899998
Q ss_pred ccchhhh-----------hcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 491 VSNKAEQ-----------ERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 491 ~S~kkE~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
..+.-+. ..|. .+.+.+| ..|.|.+.+.+.++++.+.+..
T Consensus 225 LD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 225 IDLTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HHTC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7764321 2222 2455444 3688888899988888877653
No 36
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=41.19 E-value=87 Score=32.34 Aligned_cols=86 Identities=9% Similarity=0.070 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh----------CCC-CCChHHhhhhcccccccchHHHHHH--HhcCCCcchhHHHhh
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFR----------EGY-VPPFDERMSNAIVTGTCFLDPAAAY--IGLGDIAGIDAYEWL 470 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~----------~g~-iPtleEYl~~~~~Ssg~~~~~~~~~--~~~g~~l~~e~~e~~ 470 (590)
....+.++...++.+-..+..|.. .+. .||.++|+..-..-+|.......-. +..| .+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVS--DDRGLAEA- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH-
Confidence 456778888899999999999972 233 6799999998655555443322211 1122 34444443
Q ss_pred hchhHHHHHHhhhhhhhcCcccch
Q 047877 471 RSQPKIMTASFTLSRLIADLVSNK 494 (590)
Q Consensus 471 ~~~p~i~~~~~~i~RL~NDI~S~k 494 (590)
.-++....++..-+.||+..+-
T Consensus 210 --l~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 210 --AWNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 2467777888888889887764
No 37
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=39.04 E-value=92 Score=31.56 Aligned_cols=109 Identities=15% Similarity=0.058 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHhhhhc-ccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHhhhhhhhcCc
Q 047877 414 GVVRAYFVEAQWFREGYVPPFDERMSNA-IVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASFTLSRLIADL 490 (590)
Q Consensus 414 ~~~~a~l~EAkW~~~g~iPtleEYl~~~-~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 490 (590)
.++.+-..+..|. +..+|.++|...- ..|++. .... ...| ++ ..+++..+. .-++....++..-+.||+
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L-~~~a-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDi 227 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGAL-LHYA-VQAGLILG-QAPEAQWPA---YLQFADAFGLAFQIYDDI 227 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHT-TCCGGGHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHH-HHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566666677774 3468999999884 445443 2222 1121 12 234444433 246777788888899998
Q ss_pred ccchhh-----------hhcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 491 VSNKAE-----------QERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 491 ~S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
..+.-. ...|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 228 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 228 LDVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 776432 122222 444333 3578888899999988877753
No 38
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=37.58 E-value=20 Score=26.73 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccchhHhHHHhhh
Q 047877 82 KLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRL 115 (590)
Q Consensus 82 ~~~e~lk~~vr~~l~~~~~~~~~~l~lID~lqrL 115 (590)
+++.-|.+|||.-|.. +.+.++++.++.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~-TensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKI-TENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCC-CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHH
Confidence 5566788999998875 68899999999998864
No 39
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=37.56 E-value=1.4e+02 Score=29.97 Aligned_cols=112 Identities=11% Similarity=0.090 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHhhhhhhhcC
Q 047877 412 MKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASFTLSRLIAD 489 (590)
Q Consensus 412 w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 489 (590)
...++.+-..+..|. +..||.++|...-..-+|...... ...| ++ ..+++..+. .-++.+..++..-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAA-LKMGCEIC-ELNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 445666766677775 346899999988544444332222 1222 12 234444443 34677788888889999
Q ss_pred cccchhh-hhcCCcc-------chhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 047877 490 LVSNKAE-QERGHVA-------SVVESYMKEYGTSGEETAEEFKKMIADGWKDIN 536 (590)
Q Consensus 490 I~S~kkE-~~rG~~~-------n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln 536 (590)
+..+.-. ...|+.. +.+.++ ..+.|.+..+++++++.+.++
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 8877543 2333321 222222 357888888888888887765
No 40
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=37.15 E-value=1.2e+02 Score=30.34 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHh--c-CCCcchhHHHhhhchhHHHHHHhhhhhhhcC
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIG--L-GDIAGIDAYEWLRSQPKIMTASFTLSRLIAD 489 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~--~-g~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 489 (590)
..++.+-..+..|... .+|.++|+..-..-+|...... ...| + + ..+++..+. .-++-...++..-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~a-g~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAG-DKGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTT-HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhC-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777878888643 7899999998654444432222 2222 1 1 134444443 34677788888899999
Q ss_pred cccchhhh-hcCCc---------cchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 490 LVSNKAEQ-ERGHV---------ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 490 I~S~kkE~-~rG~~---------~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
+..+.-.. .-|+. .+...+|- .+.|.+.+++.++++.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~------l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKSTYPALLG------LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCCCHHHHHC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 88775422 22321 24444432 477888899999999888765
No 41
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=35.57 E-value=1e+02 Score=31.40 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHh
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASF 481 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~ 481 (590)
....+.+....++.+-+.+..|.. +.-||.++|++.-..-+|...... ...| ++ ..+++..+.+ -++-+..+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLA-GAPQSVIDRT---RDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 456677788888988888888754 346899999987554444432222 2222 12 1355544432 46667777
Q ss_pred hhhhhhcCcccchh-----------hhhcCCccchhhhhhhc
Q 047877 482 TLSRLIADLVSNKA-----------EQERGHVASVVESYMKE 512 (590)
Q Consensus 482 ~i~RL~NDI~S~kk-----------E~~rG~~~n~V~cyMke 512 (590)
+..-+.||+..+.. ....|.. ++..+|.-+
T Consensus 218 ~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 218 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 78888888766532 2344554 555555544
No 42
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=34.35 E-value=1.2e+02 Score=30.98 Aligned_cols=111 Identities=12% Similarity=0.039 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhc-ccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHhhhhhhhcC
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNA-IVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASFTLSRLIAD 489 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~-~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 489 (590)
..++.+-..+..|... ..||.++|+..- ..|++. .... ...| ++ ..+++..+. .-++-+..++..-+.||
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L-~~~a-~~~Ga~la-ga~~~~~~~---l~~~g~~lGlAFQI~DD 252 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGEL-IKAS-IMSGAVLA-EASEGDIKK---LEGFGYKLGLAFQIKDD 252 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHH-HHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3567788888888543 368999999984 455443 2222 1221 12 234544443 34677778888889999
Q ss_pred cccchhh-----------hhcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 047877 490 LVSNKAE-----------QERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 490 I~S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~ 537 (590)
+..+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 253 iLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 253 ILDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8776332 122222 444333 3688999999999999887754
No 43
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=33.82 E-value=1e+02 Score=31.57 Aligned_cols=88 Identities=11% Similarity=-0.027 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHH-HhcCCCcchhHHHhhhchhHHHHHHh
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAY-IGLGDIAGIDAYEWLRSQPKIMTASF 481 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~-~~~g~~l~~e~~e~~~~~p~i~~~~~ 481 (590)
..+..+.++...++.+-..+..|... ..+|.++|+..-..-+|......... ..++ ..+++..+.+ -++-...+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~lG 227 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLT-GQTAEVAVLA---FEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CcCHHHHHHH---HHHHHHHH
Confidence 34666777888888888888776532 35799999998554444333222111 1112 2345444432 46777788
Q ss_pred hhhhhhcCcccchh
Q 047877 482 TLSRLIADLVSNKA 495 (590)
Q Consensus 482 ~i~RL~NDI~S~kk 495 (590)
+..-+.||+..+.-
T Consensus 228 ~aFQi~DD~lD~~g 241 (348)
T 3apz_A 228 LAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccC
Confidence 88888999888754
No 44
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=33.17 E-value=1.2e+02 Score=30.84 Aligned_cols=84 Identities=6% Similarity=0.012 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhCCCCCChHHhhhhcccccccc-hHHH--HHHHhcCCCcchhHHHhhhchhHHHHH
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQW-FREGYVPPFDERMSNAIVTGTCF-LDPA--AAYIGLGDIAGIDAYEWLRSQPKIMTA 479 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW-~~~g~iPtleEYl~~~~~Ssg~~-~~~~--~~~~~~g~~l~~e~~e~~~~~p~i~~~ 479 (590)
....+.++...++.+-+.+..| ...+.-||.++|++.-..-+|.. .... +.-+..|. +++.. .-++...
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHHH
Confidence 4666778889999999999999 65435689999998866544444 2222 11122332 22222 2466777
Q ss_pred HhhhhhhhcCcccch
Q 047877 480 SFTLSRLIADLVSNK 494 (590)
Q Consensus 480 ~~~i~RL~NDI~S~k 494 (590)
.++..-+.||+..+.
T Consensus 204 lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCccc
Confidence 788888888887764
No 45
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=33.06 E-value=88 Score=31.72 Aligned_cols=112 Identities=9% Similarity=0.123 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHH--HhcCCCcchhHH-HhhhchhHHHHHHhhhhhhhcC
Q 047877 413 KGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAY--IGLGDIAGIDAY-EWLRSQPKIMTASFTLSRLIAD 489 (590)
Q Consensus 413 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~--~~~g~~l~~e~~-e~~~~~p~i~~~~~~i~RL~ND 489 (590)
..++.+-..+..|. +..||.++|+..-..-+|......... +..| .+++.. +. .-++.+..+...-+.||
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~---l~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKW---LQAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45677777777775 567899999988544444332222111 1113 344443 33 24677788888889999
Q ss_pred cccchhh-hhcCCccchhhhhhhccCCC------HHHHHHHHHHHHHHHHHHHH
Q 047877 490 LVSNKAE-QERGHVASVVESYMKEYGTS------GEETAEEFKKMIADGWKDIN 536 (590)
Q Consensus 490 I~S~kkE-~~rG~~~n~V~cyMke~g~S------~EeA~~~i~~mi~~~wk~ln 536 (590)
+..+.-+ ..-|+.... ++...| .|.|.+..+++++++.+.+.
T Consensus 232 iLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9887543 333443211 233333 58888888888888887764
No 46
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=32.21 E-value=1.3e+02 Score=31.04 Aligned_cols=85 Identities=13% Similarity=-0.003 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHh--cCCCcchhHHHhhhchhHHHHHHh
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIG--LGDIAGIDAYEWLRSQPKIMTASF 481 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~--~g~~l~~e~~e~~~~~p~i~~~~~ 481 (590)
.+..+.++...++.+-..+..|... .-||.++|+..-..-+|....... .+| ++ ..+++..+. .-.+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~la-g~~~~~~~~---l~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACAS-SIGAVLG-GADERTADT---LEKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 4566778888999999999999653 368999999876555555433222 222 12 235555443 346778888
Q ss_pred hhhhhhcCcccch
Q 047877 482 TLSRLIADLVSNK 494 (590)
Q Consensus 482 ~i~RL~NDI~S~k 494 (590)
+..-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888999987764
No 47
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=31.88 E-value=20 Score=41.33 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCcCC-Ccc-h-hhhHHHHHHHHHHHHHHHHh
Q 047877 59 NFRPTIWKDGSISS-PVL-E-VETYDKLNEEMKDHVKEMLV 96 (590)
Q Consensus 59 ~~~ps~W~~~fl~~-~~~-~-~~~~~~~~e~lk~~vr~~l~ 96 (590)
+|||++|+++++.+ ..+ . ...+.+++++|+++||+||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 68999999999987 333 2 44567889999999999995
No 48
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=22.23 E-value=2e+02 Score=29.61 Aligned_cols=88 Identities=8% Similarity=-0.096 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCC----CCChHHhhhhcccccccc-hH--HHHHHHhcCCCcchhHHHhhhchhHH
Q 047877 404 SVSFTKDMMKGVVRAYFVEAQWFREGY----VPPFDERMSNAIVTGTCF-LD--PAAAYIGLGDIAGIDAYEWLRSQPKI 476 (590)
Q Consensus 404 ~~~~~~~~w~~~~~a~l~EAkW~~~g~----iPtleEYl~~~~~Ssg~~-~~--~~~~~~~~g~~l~~e~~e~~~~~p~i 476 (590)
.+..+.+.....+.+-+.+..|...+. .+|+++|+..-..-+|.. .. +.+.-+..|. .+++..+. .-++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~~~~~~~~---l~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-DSKEEHEN---AKAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-CCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-ccHHHHHH---HHHH
Confidence 456677788888999999999976543 579999999866555544 21 1222222231 34444443 3467
Q ss_pred HHHHhhhhhhhcCcccchh
Q 047877 477 MTASFTLSRLIADLVSNKA 495 (590)
Q Consensus 477 ~~~~~~i~RL~NDI~S~kk 495 (590)
....++..-+.||+..+.-
T Consensus 246 g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7888888889999887653
No 49
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=22.19 E-value=6.2e+02 Score=25.58 Aligned_cols=192 Identities=9% Similarity=0.054 Sum_probs=91.5
Q ss_pred chhHHHHHHHHHHHHhhhhcccCC-CHHH----HHHHHHhhhh--cCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcC
Q 047877 328 RGRIIFTKIYLLLLIIDDTYDAYG-TFGE----LQRFTDAVER--WDINCVSELPEYMKPLYGALLNLFDELNNELAEEG 400 (590)
Q Consensus 328 ~~Ri~laK~~~l~~viDD~fD~yg-t~eE----l~~ft~aver--WD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~ 400 (590)
..|-.++-+-.|.=..||+-|... +.++ |+.|.+.+.. |.... .-|. .+.++..+-.+...+. .-.
T Consensus 37 ~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~--~~~~-~~~ll~~~p~v~~~f~----~l~ 109 (343)
T 3vj8_A 37 EMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME--SKEK-DRQVLEDFPTISLEFR----NLA 109 (343)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC--CCST-TTHHHHTHHHHHHHHH----HSC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcC--CChh-hHHHHhcCcHHHHHHH----HhH
Confidence 346666677888899999999764 3333 4555555543 32111 1121 2232222211221211 000
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHH
Q 047877 401 RSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTAS 480 (590)
Q Consensus 401 ~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~ 480 (590)
.. ......+....++.++. .+.. ..++|++|+......+.|+--.+++-.++....-+. ..+. ........
T Consensus 110 ~~-~~~~i~~~~~~m~~gm~---~dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~~---~~~~A~~l 180 (343)
T 3vj8_A 110 EK-YQTVIADICRRMGIGMA---EFLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVGE---DTERANSM 180 (343)
T ss_dssp HH-HHHHHHHHHHHHHHHHH---HGGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHHH---CHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHH---Hhcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhhh---HHHHHHHH
Confidence 00 11122333344555553 2332 567898888888777776665555554544321111 1111 12233344
Q ss_pred hhhhhhhcCcccchhhhhcCCccchhh-hhhhccCCCHH---------HHHHHHHHHHHHHHHHHHH
Q 047877 481 FTLSRLIADLVSNKAEQERGHVASVVE-SYMKEYGTSGE---------ETAEEFKKMIADGWKDINE 537 (590)
Q Consensus 481 ~~i~RL~NDI~S~kkE~~rG~~~n~V~-cyMke~g~S~E---------eA~~~i~~mi~~~wk~ln~ 537 (590)
+.-.-+.|=|........+|-+ .+. =.|.++|++.+ .+..-+..++..+..-+.+
T Consensus 181 G~AlQltNilRDv~eD~~~gR~--YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~ 245 (343)
T 3vj8_A 181 GLFLQKTNIIRDYLEDQQGGRE--FWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPD 245 (343)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCC--CSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhHHHHhCCCe--eCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555566653 111 13567888754 3455567777766655544
No 50
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=21.41 E-value=60 Score=32.56 Aligned_cols=108 Identities=13% Similarity=0.007 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhCC-CCCChHHhhhhc-ccccccchHHHH-HHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCc
Q 047877 414 GVVRAYFVEAQWFREG-YVPPFDERMSNA-IVTGTCFLDPAA-AYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADL 490 (590)
Q Consensus 414 ~~~~a~l~EAkW~~~g-~iPtleEYl~~~-~~Ssg~~~~~~~-~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 490 (590)
.++.+-..+..|...+ ..+|.++|+..- ..|++...+.+. .-+..| .+++..+. .-++-...++..-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG--GSDEEIER---LRKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566777777775321 246899999884 455544222111 111123 35555444 346777888888999999
Q ss_pred ccchhhhhcCCccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 047877 491 VSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDIN 536 (590)
Q Consensus 491 ~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln 536 (590)
..+..+. -.+...+| ..|.|.+.+.+.++++.+.+.
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 271 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLL 271 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8876443 23454444 357788888888887776654
No 51
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=20.40 E-value=77 Score=25.23 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 047877 513 YGTSGEETAEEFKKMIADGWKDI 535 (590)
Q Consensus 513 ~g~S~EeA~~~i~~mi~~~wk~l 535 (590)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888654
No 52
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=20.13 E-value=2.3e+02 Score=28.26 Aligned_cols=84 Identities=8% Similarity=0.055 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccccccchHHHHHHHh-cCCCcchhHHHhhhchhHHHHHHh
Q 047877 403 YSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIG-LGDIAGIDAYEWLRSQPKIMTASF 481 (590)
Q Consensus 403 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~-~g~~l~~e~~e~~~~~p~i~~~~~ 481 (590)
.....+.+.+..++.+-..+..|......||.++|+..-..-+|..........+ .+. .++ ..-++-...+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 3466678888999999999999987666799999999866555543322221111 121 121 1245677778
Q ss_pred hhhhhhcCcccch
Q 047877 482 TLSRLIADLVSNK 494 (590)
Q Consensus 482 ~i~RL~NDI~S~k 494 (590)
+..-+.||+..+.
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 8888888887664
Done!