BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047888
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S4Y|A Chain A, Crystal Structure Of Human Thiamin Pyrophosphokinase 1
pdb|3S4Y|B Chain B, Crystal Structure Of Human Thiamin Pyrophosphokinase 1
Length = 247
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 142/242 (58%), Gaps = 21/242 (8%)
Query: 39 SLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPD 98
+L Y LV+LNQ L + LW A LR CADGGANR+YD R + P+
Sbjct: 20 NLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYD---------ITEGERESFLPE 70
Query: 99 LIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLR---I 155
I GD DSIR EV ++YA+ G +++ + DQD TD KC+ ++ +E+ +L+ I
Sbjct: 71 FINGDFDSIRPEVREYYATKGCELI-STPDQDHTDFTKCLKMLQK---KIEEKDLKVDVI 126
Query: 156 LVAGALGGRFDHEAGNINVLYRFSDIR---IILLSDDCHIQLLPKTHRHDIYIQSSVEGP 212
+ G L GRFD ++N L++ + I II++ ++ I LL + +H +++ + +EG
Sbjct: 127 VTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLL-QPGKHRLHVDTGMEGD 185
Query: 213 HCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEK-VTVRSDSDLLWTISI 271
CGLIP+G P +TTGL+W+L N FG LVSTSN G VTV +D LLWT++I
Sbjct: 186 WCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMAI 245
Query: 272 KN 273
K+
Sbjct: 246 KS 247
>pdb|1IG3|A Chain A, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin
pdb|1IG3|B Chain B, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin
pdb|2F17|A Chain A, Mouse Thiamin Pyrophosphokinase In A Ternary Complex With
Pyrithiamin Pyrophosphate And Amp At 2.5 Angstrom
pdb|2F17|B Chain B, Mouse Thiamin Pyrophosphokinase In A Ternary Complex With
Pyrithiamin Pyrophosphate And Amp At 2.5 Angstrom
Length = 263
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 143/257 (55%), Gaps = 18/257 (7%)
Query: 21 MTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELP 80
M H+ + L P PT + L Y LVVLNQ L LW+ A LR CADGGAN +YD
Sbjct: 21 MEHAFTPLEPLLPTGN---LKYCLVVLNQPLDARFRHLWKKALLRACADGGANHLYD--- 74
Query: 81 QLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAY 140
L E R + P+ + GD DSIR EV ++Y G ++ + DQD TD KC+
Sbjct: 75 -LTEGE-----RESFLPEFVSGDFDSIRPEVKEYYTKKGCDLI-STPDQDHTDFTKCLQV 127
Query: 141 IRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIR---IILLSDDCHIQLLPK 197
++ E I+ G LGGRFD ++N L++ + I II++ D I LL +
Sbjct: 128 LQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQKDSLIYLL-Q 186
Query: 198 THRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEK- 256
+H +++ + +EG CGLIP+G P +TTGL+W+L N FG LVSTSN G
Sbjct: 187 PGKHRLHVDTGMEGSWCGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLVSTSNTYDGSGL 246
Query: 257 VTVRSDSDLLWTISIKN 273
VTV +D LLWT++IK+
Sbjct: 247 VTVETDHPLLWTMAIKS 263
>pdb|1IG0|A Chain A, Crystal Structure Of Yeast Thiamin Pyrophosphokinase
pdb|1IG0|B Chain B, Crystal Structure Of Yeast Thiamin Pyrophosphokinase
Length = 319
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 58/279 (20%)
Query: 43 ALVVLNQRLPRFAPL---LWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDL 99
L++LNQ++ PL +W+ L++CADG ANR+YD L +D +R +Y P+
Sbjct: 40 TLLILNQKIDIPRPLFYKIWKLHDLKVCADGAANRLYDYL------DDDETLRIKYLPNY 93
Query: 100 IKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYI---------RDCTPN--- 147
I GD+DS+ ++V +Y ++ ++ Q +TD KCV I R N
Sbjct: 94 IIGDLDSLSEKVYKYYRKNKVTIIKQT-TQYSTDFTKCVNLISLHFNSPEFRSLISNKDN 152
Query: 148 --------LEK------------------SNLRILVAGALGGRFDHEAGNINVLYRFSD- 180
LEK + + +L G +GGRFD +I LY S+
Sbjct: 153 LQSNHGIELEKGIHTLYNTMTESLVFSKVTPISLLALGGIGGRFDQTVHSITQLYTLSEN 212
Query: 181 ---IRIILLSDDCHIQLLPKTH---RHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWD 234
++ ++ I L+ K +D +++ G +CGL+PIG + T GL+WD
Sbjct: 213 ASYFKLCYMTPTDLIFLIKKNGTLIEYDPQFRNTCIG-NCGLLPIGEATLVKETRGLKWD 271
Query: 235 LDNTETR-FGGLVSTSNIVKGEKVT-VRSDSDLLWTISI 271
+ N T G VS+SN G+ + + D++ + I
Sbjct: 272 VKNWPTSVVTGRVSSSNRFVGDNCCFIDTKDDIILNVEI 310
>pdb|2G9Z|A Chain A, Thiamin Pyrophosphokinase From Candida Albicans
pdb|2G9Z|B Chain B, Thiamin Pyrophosphokinase From Candida Albicans
Length = 348
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 124/277 (44%), Gaps = 46/277 (16%)
Query: 43 ALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRR-YKPDLIK 101
L++LNQ++ LW+ ++ +CADGGAN +Y+ H +++R Y PD I
Sbjct: 65 VLLILNQKITIDLISLWKKCEIIVCADGGANSLYEYFNDNNHHHHHENLQRSDYIPDYIV 124
Query: 102 GDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIR----------------DCT 145
GD DSI +V +Y S G+K++ +S Q D K + I+ D
Sbjct: 125 GDFDSISPDVKTYYESHGSKIIRQS-SQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEV 183
Query: 146 PNLEK--------------SNLRILVAGALGGRFDHEAGNINVLYRFSD----IRIILLS 187
L K ++ I V A+GGRFD +IN LY ++ + + ++
Sbjct: 184 DGLAKLWNGLNNSSDVVVDIDITIYVLNAIGGRFDQTVQSINQLYIMNEDYPKVTVFFIT 243
Query: 188 DDCHIQLLPKTHRHDIYI--------QSSVEGPHCGLIPIGMPSGST-STTGLQWDLDNT 238
+ I LL K + Y S P CGL+P+ + ++ GL++D+ N
Sbjct: 244 TNDIIFLLKKGVNYISYKNRLMFHKDNGSSPTPTCGLLPLSNKTPIILNSYGLKYDMRNW 303
Query: 239 ETRFGGLVSTSNIVKGEK-VTVRSDSDLLWTISIKNQ 274
+T G VS+SN + GE V D++ I I Q
Sbjct: 304 KTEMLGQVSSSNRISGETGFIVECSDDIVMNIEIDVQ 340
>pdb|2HH9|A Chain A, Thiamin Pyrophosphokinase From Candida Albicans
pdb|2HH9|B Chain B, Thiamin Pyrophosphokinase From Candida Albicans
Length = 339
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 123/274 (44%), Gaps = 46/274 (16%)
Query: 43 ALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRR-YKPDLIK 101
L++LNQ++ LW+ ++ +CADGGAN +Y+ H +++R Y PD I
Sbjct: 65 VLLILNQKITIDLISLWKKCEIIVCADGGANSLYEYFNDNNHHHHHENLQRSDYIPDYIV 124
Query: 102 GDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIR----------------DCT 145
GD DSI +V +Y S G+K++ +S Q D K + I+ D
Sbjct: 125 GDFDSISPDVKTYYESHGSKIIRQS-SQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEV 183
Query: 146 PNLEK--------------SNLRILVAGALGGRFDHEAGNINVLYRFSD----IRIILLS 187
L K ++ I V A+GGRFD +IN LY ++ + + ++
Sbjct: 184 DGLAKLWNGLNNSSDVVVDIDITIYVLNAIGGRFDQTVQSINQLYIMNEDYPKVTVFFIT 243
Query: 188 DDCHIQLLPKTHRHDIYI--------QSSVEGPHCGLIPIGMPSGST-STTGLQWDLDNT 238
+ I LL K + Y S P CGL+P+ + ++ GL++D+ N
Sbjct: 244 TNDIIFLLKKGVNYISYKNRLMFHKDNGSSPTPTCGLLPLSNKTPIILNSYGLKYDMRNW 303
Query: 239 ETRFGGLVSTSNIVKGEK-VTVRSDSDLLWTISI 271
+T G VS+SN + GE V D++ I I
Sbjct: 304 KTEMLGQVSSSNRISGETGFIVECSDDIVMNIEI 337
>pdb|3L8M|A Chain A, Crystal Structure Of A Probable Thiamine Pyrophosphokinase
From Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Id Syr86
pdb|3L8M|B Chain B, Crystal Structure Of A Probable Thiamine Pyrophosphokinase
From Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Id Syr86
Length = 212
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 25/182 (13%)
Query: 97 PDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRIL 156
P GD DSI +F ++ + ++D TDL + +++ I
Sbjct: 42 PQFAVGDFDSISDSERNFIQQ-QIEINPYNSEKDDTDLALGI------DQAVKRGYRNID 94
Query: 157 VAGALGGRFDHEAGNINVL----YRFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGP 212
V GA GGR DH G + +L Y +I I L+ D IQ + K + Y S + P
Sbjct: 95 VYGATGGRLDHFXGALQILEKPEYAKXNINIKLIDDTNEIQFIQKGQFNVTY---SEQFP 151
Query: 213 HCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSN----------IVKGEKVTVRSD 262
+ IP+ P+ S G +++L N + G ++ SN I++G + +RS
Sbjct: 152 YISFIPVIYPT-VISLKGFKYNLQNETLKLGSTLTISNELSQSCGNIEIIEGSVLXIRSK 210
Query: 263 SD 264
+
Sbjct: 211 DE 212
>pdb|3LM8|A Chain A, Crystal Structure Of Thiamine Pyrophosphokinase From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr677
pdb|3LM8|B Chain B, Crystal Structure Of Thiamine Pyrophosphokinase From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr677
pdb|3LM8|C Chain C, Crystal Structure Of Thiamine Pyrophosphokinase From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr677
pdb|3LM8|D Chain D, Crystal Structure Of Thiamine Pyrophosphokinase From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr677
Length = 222
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 21/172 (12%)
Query: 102 GDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGAL 161
GD DSI ++ + ++D TDL + + + P++ I + G
Sbjct: 50 GDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDI------IQIFGIT 103
Query: 162 GGRFDHEAGNINVLYRF--SDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPI 219
GGR DH GNI +LY+ ++I+I L+ HIQ P I+ + IP
Sbjct: 104 GGRADHFLGNIQLLYKGVKTNIKIRLIDKQNHIQXFPPGEYD---IEKDENKRYISFIPF 160
Query: 220 GMPSGSTSTTGLQWDLDNTETRFGGLVSTSN----------IVKGEKVTVRS 261
+ TG ++ L+N G + SN VKG + +RS
Sbjct: 161 SEDIHELTLTGFKYPLNNCHITLGSTLCISNELIHSRGTFSFVKGILIXIRS 212
>pdb|2OMK|A Chain A, Structure Of The Bacteroides Thetaiotaomicron Thiamin
Pyrophosphokinase
pdb|2OMK|B Chain B, Structure Of The Bacteroides Thetaiotaomicron Thiamin
Pyrophosphokinase
Length = 231
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 27/138 (19%)
Query: 43 ALVVLNQRLPRFA-PL-LWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLI 100
A+++ N P PL L A+ +C AN I R + PD+I
Sbjct: 34 AIILANGEYPAHELPLRLLAEAQFVVCCXXAANEY---------------ISRGHTPDVI 78
Query: 101 KGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGA 160
GD DS+ E ++S ++ + DQ+T D K V Y++ K +I + GA
Sbjct: 79 IGDGDSLLPEYKKRFSS----IILQISDQETNDQTKAVHYLQS------KGIRKIAIVGA 128
Query: 161 LGGRFDHEAGNINVLYRF 178
G R DH GNI++L +
Sbjct: 129 TGKREDHTLGNISLLVEY 146
>pdb|3IHK|A Chain A, Crystal Structure Of Thiamin Pyrophosphokinase From
S.Mutans, Northeast Structural Genomics Consortium
Target Smr83
pdb|3IHK|B Chain B, Crystal Structure Of Thiamin Pyrophosphokinase From
S.Mutans, Northeast Structural Genomics Consortium
Target Smr83
pdb|3IHK|C Chain C, Crystal Structure Of Thiamin Pyrophosphokinase From
S.Mutans, Northeast Structural Genomics Consortium
Target Smr83
Length = 218
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 98 DLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILV 157
DL GD DS+ E + K+V +++ TD + I DC +E I+V
Sbjct: 40 DLAIGDFDSVSAEEFKQIKAKAKKLVXAPAEKNDTDTELALKTIFDCFGRVE-----IIV 94
Query: 158 AGALGGRFDHEAGNI 172
GA GGR DH NI
Sbjct: 95 FGAFGGRIDHXLSNI 109
>pdb|3K94|A Chain A, Crystal Structure Of Thiamin Pyrophosphokinase From
Geobacillus Thermodenitrificans, Northeast Structural
Genomics Consortium Target Gtr2
pdb|3K94|B Chain B, Crystal Structure Of Thiamin Pyrophosphokinase From
Geobacillus Thermodenitrificans, Northeast Structural
Genomics Consortium Target Gtr2
Length = 223
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 148 LEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQL--LPKTHRHDIYI 205
+E++ I + GA GGR DH GN+ +L +++D R I + D ++ LP T+ +
Sbjct: 89 VEQTARXIRLFGATGGRLDHLFGNVELLLKYAD-RPIEIVDRQNVLTVHLPGTYT----V 143
Query: 206 QSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSN 250
+ IP+ + TG ++ L N G + SN
Sbjct: 144 XYDARYCYVSYIPVSETVAEFTLTGFKYPLTNXHISRGSTLXISN 188
>pdb|3MEL|A Chain A, Crystal Structure Of Thiamin Pyrophosphokinase Family
Protei Enterococcus Faecalis, Northeast Structural
Genomics Consor Target Efr150
pdb|3MEL|B Chain B, Crystal Structure Of Thiamin Pyrophosphokinase Family
Protei Enterococcus Faecalis, Northeast Structural
Genomics Consor Target Efr150
pdb|3MEL|C Chain C, Crystal Structure Of Thiamin Pyrophosphokinase Family
Protei Enterococcus Faecalis, Northeast Structural
Genomics Consor Target Efr150
pdb|3MEL|D Chain D, Crystal Structure Of Thiamin Pyrophosphokinase Family
Protei Enterococcus Faecalis, Northeast Structural
Genomics Consor Target Efr150
Length = 222
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 99 LIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVA 158
L GD DS+ +E F ++ ++D TD + P E + +
Sbjct: 45 LAVGDFDSLSREEYHFVQETTETLIQAPAEKDDTDTQLALQEALQRFPQAEXT-----II 99
Query: 159 GALGGRFDHEAGNINVLY--RFSDI-RIILLSD 188
GA GGR DH N+ + + RF + R I L D
Sbjct: 100 GATGGRIDHLLANLWLPFEPRFQGVLRQIRLCD 132
>pdb|3CQ9|A Chain A, Crystal Structure Of The Lp_1622 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr114
pdb|3CQ9|B Chain B, Crystal Structure Of The Lp_1622 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr114
pdb|3CQ9|C Chain C, Crystal Structure Of The Lp_1622 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr114
pdb|3CQ9|D Chain D, Crystal Structure Of The Lp_1622 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr114
Length = 227
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 91 IRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEK 150
++R +P + GD DSI + + DQD TD + I + L+
Sbjct: 38 VKRGIQPVXVVGDFDSIDAAELQTVKDALVGAIVVKPDQDHTDTQLAIKSIFE---QLQP 94
Query: 151 SNLRILVAGALGGRFDHEAGN 171
+ + GA GGR DH N
Sbjct: 95 DEVHLY--GATGGRLDHLLAN 113
>pdb|1GM9|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 209
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 90 DIRRRYKPDLIKGDMDSIRKEVMDF---YASLGTKVVDESHDQDTTDLHKCVAYIRDCTP 146
DIRR Y PD I+ + ++ E M YA +D+ + T L K
Sbjct: 68 DIRRNYWPDAIRAQIAALSPEDMSILQGYADGMNAWIDKVNTNPETLLPKQFNTFGFTPK 127
Query: 147 NLEKSNLRILVAGALGGRFDHEAGNINVL 175
E ++ ++ G + RF I+ L
Sbjct: 128 RWEPFDVAMIFVGTMANRFSDSTSEIDNL 156
>pdb|1GKF|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 260
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 90 DIRRRYKPDLIKGDMDSIRKE---VMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTP 146
DIRR Y PD I+ + ++ E ++ YA +D+ + T L K
Sbjct: 68 DIRRNYWPDAIRAQIAALSPEDMSILQGYADGMNAWIDKVNTNPETLLPKQFNTFGFTPK 127
Query: 147 NLEKSNLRILVAGALGGRFDHEAGNINVL 175
E ++ ++ G + RF I+ L
Sbjct: 128 RWEPFDVAMIFVGTMANRFSDSTSEIDNL 156
>pdb|1E3A|A Chain A, A Slow Processing Precursor Penicillin Acylase From
Escherichia Coli
pdb|1GK9|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 260
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 90 DIRRRYKPDLIKGDMDSIRKE---VMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTP 146
DIRR Y PD I+ + ++ E ++ YA +D+ + T L K
Sbjct: 68 DIRRNYWPDAIRAQIAALSPEDMSILQGYADGMNAWIDKVNTNPETLLPKQFNTFGFTPK 127
Query: 147 NLEKSNLRILVAGALGGRFDHEAGNINVL 175
E ++ ++ G + RF I+ L
Sbjct: 128 RWEPFDVAMIFVGTMANRFSDSTSEIDNL 156
>pdb|1GM7|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 209
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 90 DIRRRYKPDLIKGDMDSIRKEVMDF---YASLGTKVVDESHDQDTTDLHKCVAYIRDCTP 146
DIRR Y PD I+ + ++ E M YA +D+ + T L K
Sbjct: 68 DIRRNYWPDAIRAQIAALSPEDMSILQGYADGMNAWIDKVNTNPETLLPKQFNTFGFTPK 127
Query: 147 NLEKSNLRILVAGALGGRFDHEAGNINVL 175
E ++ ++ G + RF I+ L
Sbjct: 128 RWEPFDVAMIFVGTMANRFSDSTSEIDNL 156
>pdb|1JX9|A Chain A, Penicillin Acylase, Mutant
pdb|1K5Q|A Chain A, Penicillin Acylase, Mutant Complexed With Paa
pdb|1K5S|A Chain A, Penicillin Acylase, Mutant Complexed With Ppa
pdb|1K7D|A Chain A, Penicillin Acylase With Phenyl Proprionic Acid
Length = 209
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 90 DIRRRYKPDLIKGDMDSIRKEVMDF---YASLGTKVVDESHDQDTTDLHKCVAYIRDCTP 146
DIRR Y PD I+ + ++ E M YA +D+ + T L K
Sbjct: 69 DIRRNYWPDAIRAQIAALSPEDMSILQGYADGMNAWIDKVNTNPETLLPKQFNTFGFTPK 128
Query: 147 NLEKSNLRILVAGALGGRFDHEAGNINVL 175
E ++ ++ G + RF I+ L
Sbjct: 129 RWEPFDVAMIFVGTMANRFSDSTSEIDNL 157
>pdb|1PNK|A Chain A, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNL|A Chain A, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNM|A Chain A, Penicillin Acylase Has A Single-Amino-Acid Catalytic
Centre
pdb|1AI4|A Chain A, Penicillin Acylase Complexed With
3,4-Dihydroxyphenylacetic Acid
pdb|1AI5|A Chain A, Penicillin Acylase Complexed With M-Nitrophenylacetic Acid
pdb|1AI6|A Chain A, Penicillin Acylase With P-Hydroxyphenylacetic Acid
pdb|1AI7|A Chain A, Penicillin Acylase Complexed With Phenol
pdb|1AJN|A Chain A, Penicillin Acylase Complexed With P-Nitrophenylacetic Acid
pdb|1AJP|A Chain A, Penicillin Acylase Complexed With
2,5-Dihydroxyphenylacetic Acid
pdb|1AJQ|A Chain A, Penicillin Acylase Complexed With Thiopheneacetic Acid
pdb|1FXH|A Chain A, Mutant Of Penicillin Acylase Impaired In Catalysis With
Phenylacetic Acid In The Active Site
pdb|1FXV|A Chain A, Penicillin Acylase Mutant Impaired In Catalysis With
Penicillin G In The Active Site
pdb|1GM8|A Chain A, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1H2G|A Chain A, Altered Substrate Specificity Mutant Of Penicillin Acylase
Length = 209
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 90 DIRRRYKPDLIKGDMDSIRKEVMDF---YASLGTKVVDESHDQDTTDLHKCVAYIRDCTP 146
DIRR Y PD I+ + ++ E M YA +D+ + T L K
Sbjct: 68 DIRRNYWPDAIRAQIAALSPEDMSILQGYADGMNAWIDKVNTNPETLLPKQFNTFGFTPK 127
Query: 147 NLEKSNLRILVAGALGGRFDHEAGNINVL 175
E ++ ++ G + RF I+ L
Sbjct: 128 RWEPFDVAMIFVGTMANRFSDSTSEIDNL 156
>pdb|1XKW|A Chain A, Pyochelin Outer Membrane Receptor Fpta From Pseudomonas
Aeruginosa
Length = 665
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 223 SGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTIS 270
+ ST+ + +WD E GG +S S V+G V D D + ++
Sbjct: 133 AASTTLSAGRWDRYRAEVDVGGPLSASGNVRGRAVAAYEDRDYFYDVA 180
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 102 GDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNL-------- 153
G+ +I+KE+ Y L T+ +DES Q ++H I T +L+ S L
Sbjct: 345 GEAXAIKKELEQKYVDLCTRSIDESSQQYDQEIHDLQLQI--STVDLQISRLLQEQNSFY 402
Query: 154 -----RILVAGALGGRFDHEAGNINVLY--RFSDI 181
R+ AGA F ++ +Y + SD+
Sbjct: 403 NPKWERVFRAGAEESYFAYQVDRFACIYXEKLSDL 437
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 102 GDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNL-------- 153
G+ +I+KE+ Y L T+ +DES Q ++H I T +L+ S L
Sbjct: 345 GEAMAIKKELEQKYVDLCTRSIDESSQQYDQEIHDLQLQI--STVDLQISRLLQEQNSFY 402
Query: 154 -----RILVAGALGGRFDHEAGNINVLY--RFSDI 181
R+ AGA F ++ +Y + SD+
Sbjct: 403 NPKWERVFRAGAEESYFAYQVDRFACIYMEKLSDL 437
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,608,546
Number of Sequences: 62578
Number of extensions: 373478
Number of successful extensions: 927
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 25
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)