BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047888
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H3S4|TPK1_HUMAN Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK1 PE=1 SV=1
Length = 243
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 145/251 (57%), Gaps = 21/251 (8%)
Query: 30 PSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPS 89
P P S +L Y LV+LNQ L + LW A LR CADGGANR+YD
Sbjct: 7 PLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYD---------ITE 57
Query: 90 DIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLE 149
R + P+ I GD DSIR EV ++YA+ G +++ + DQD TD KC+ ++ +E
Sbjct: 58 GERESFLPEFINGDFDSIRPEVREYYATKGCELI-STPDQDHTDFTKCLKMLQK---KIE 113
Query: 150 KSNLR---ILVAGALGGRFDHEAGNINVLYRFSDIR---IILLSDDCHIQLLPKTHRHDI 203
+ +L+ I+ G L GRFD ++N L++ + I II++ ++ I LL + +H +
Sbjct: 114 EKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLL-QPGKHRL 172
Query: 204 YIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEK-VTVRSD 262
++ + +EG CGLIP+G P +TTGL+W+L N FG LVSTSN G VTV +D
Sbjct: 173 HVDTGMEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETD 232
Query: 263 SDLLWTISIKN 273
LLWT++IK+
Sbjct: 233 HPLLWTMAIKS 243
>sp|Q9R0M5|TPK1_MOUSE Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk1 PE=1 SV=1
Length = 243
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 143/257 (55%), Gaps = 18/257 (7%)
Query: 21 MTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELP 80
M H+ + L P PT + L Y LVVLNQ L LW+ A LR CADGGAN +YD
Sbjct: 1 MEHAFTPLEPLLPTGN---LKYCLVVLNQPLDARFRHLWKKALLRACADGGANHLYD--- 54
Query: 81 QLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAY 140
L E R + P+ + GD DSIR EV ++Y G ++ + DQD TD KC+
Sbjct: 55 -LTEGE-----RESFLPEFVSGDFDSIRPEVKEYYTKKGCDLI-STPDQDHTDFTKCLQV 107
Query: 141 IRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIR---IILLSDDCHIQLLPK 197
++ E I+ G LGGRFD ++N L++ + I II++ D I LL +
Sbjct: 108 LQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQKDSLIYLL-Q 166
Query: 198 THRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEK- 256
+H +++ + +EG CGLIP+G P +TTGL+W+L N FG LVSTSN G
Sbjct: 167 PGKHRLHVDTGMEGSWCGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLVSTSNTYDGSGL 226
Query: 257 VTVRSDSDLLWTISIKN 273
VTV +D LLWT++IK+
Sbjct: 227 VTVETDHPLLWTMAIKS 243
>sp|Q5E9T4|TPK1_BOVIN Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 PE=2 SV=1
Length = 243
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 147/260 (56%), Gaps = 24/260 (9%)
Query: 21 MTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELP 80
M H+ + L P P+ S L Y LV+LNQ L + LW A LR CADGGAN +YD
Sbjct: 1 MEHAITPLDPLLPSGS---LKYCLVILNQPLDKCFRHLWHKALLRACADGGANHLYDV-- 55
Query: 81 QLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAY 140
R + P+ I GD DSIR EV + YA G +++ + DQD TD KC+
Sbjct: 56 -------TEGERESFLPEFISGDFDSIRPEVREHYAIKGCEIIS-TPDQDHTDFTKCLEV 107
Query: 141 IRDCTPNLEKSNLR---ILVAGALGGRFDHEAGNINVLYR---FSDIRIILLSDDCHIQL 194
++ +E+ +L+ I+ G L GRFD +++ L++ + + +I++ ++ I L
Sbjct: 108 LQK---KIEEKDLQVDMIVTLGGLAGRFDQIMASVSTLFQAPQITSLPVIIIQEESLIYL 164
Query: 195 LPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKG 254
L + +H +++ + +EG CGLIP+G P +TTGL+W+L + FG LVSTSN G
Sbjct: 165 L-QPGKHKLHVDTGMEGDWCGLIPVGQPCNQVTTTGLKWNLTHQMLGFGTLVSTSNTYDG 223
Query: 255 EK-VTVRSDSDLLWTISIKN 273
VTV +D LLWT++IKN
Sbjct: 224 SGVVTVETDHPLLWTMAIKN 243
>sp|P41888|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=tnr3 PE=4 SV=1
Length = 569
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 37/242 (15%)
Query: 42 YALVVLNQRLP----RFAPLLWQHAKLRLCADGGAN--RVYDELPQLFPHEDPSDIRRRY 95
+A+++LNQ + RF LW+ A +R+CADGGAN R YD
Sbjct: 353 FAVLLLNQPIDIPDDRFR-TLWKRASIRVCADGGANQLRNYDS---------------SL 396
Query: 96 KPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRI 155
KPD + GD DS+ E +Y +G +V + Q+TTD KC I+ E I
Sbjct: 397 KPDYVVGDFDSLTDETKAYYKEMGVNIVFDPC-QNTTDFMKCHKIIK------EHGIDTI 449
Query: 156 LVAGALGGRFDHEAGNINVLYRFSDI----RIILLSD-DCHIQLLPKTHRHDIYIQSSVE 210
V +GGR DH GN+N L+ + I + LL++ + L P + D +
Sbjct: 450 FVLCGMGGRVDHAIGNLNHLFWAASISEKNEVFLLTELNVSTLLQPGINHVDCHDNI--- 506
Query: 211 GPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTIS 270
G HCGL+P+G T+GL+W++++ +FGGLVS+ N+V VT+ ++ ++WT+
Sbjct: 507 GLHCGLLPVGQSVYVKKTSGLEWNIEDRICQFGGLVSSCNVVTKATVTIEVNNFIVWTME 566
Query: 271 IK 272
+
Sbjct: 567 TR 568
>sp|P30636|TPK1_CAEEL Thiamin pyrophosphokinase 1 OS=Caenorhabditis elegans GN=tpk-1 PE=1
SV=3
Length = 243
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 26/224 (11%)
Query: 55 APLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYK--PDLIKGDMDSIRKEVM 112
A LW AK R+ DG N + R+ + P +I GD DSI K++
Sbjct: 33 AENLWNKAKYRVATDGAVNEILK--------------RKSFVEWPHIICGDFDSINKQI- 77
Query: 113 DFYASLGTKVVDESH--DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAG 170
TK H DQD TDL K V + + I+V G L GRFDH
Sbjct: 78 ------DTKNAKVVHLPDQDYTDLSKSVQWCLEQKTLTSWEFENIVVLGGLNGRFDHTMS 131
Query: 171 NINVLYRFSDIRI-ILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTT 229
++ L RF D + +++ D ++ L T ++ + + CG+IPI S+
Sbjct: 132 TLSSLIRFVDSQTPVIVLDSRNLVLAVPTGDSNLDVNLEMTTKMCGIIPIVQKETIVSSI 191
Query: 230 GLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKN 273
GL+++++N FG L+STSN V +V ++S S L+++I ++N
Sbjct: 192 GLKYEMENLALEFGKLISTSNEVTTSQVFLKSSSSLIFSIELEN 235
>sp|P35202|THI80_YEAST Thiamine pyrophosphokinase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=THI80 PE=1 SV=1
Length = 319
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 58/279 (20%)
Query: 43 ALVVLNQRLPRFAPL---LWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDL 99
L++LNQ++ PL +W+ L++CADG ANR+YD L +D +R +Y P+
Sbjct: 40 TLLILNQKIDIPRPLFYKIWKLHDLKVCADGAANRLYDYL------DDDETLRIKYLPNY 93
Query: 100 IKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYI---------RDCTPN--- 147
I GD+DS+ ++V +Y ++ ++ Q +TD KCV I R N
Sbjct: 94 IIGDLDSLSEKVYKYYRKNKVTIIKQT-TQYSTDFTKCVNLISLHFNSPEFRSLISNKDN 152
Query: 148 --------LEK------------------SNLRILVAGALGGRFDHEAGNINVLYRFSD- 180
LEK + + +L G +GGRFD +I LY S+
Sbjct: 153 LQSNHGIELEKGIHTLYNTMTESLVFSKVTPISLLALGGIGGRFDQTVHSITQLYTLSEN 212
Query: 181 ---IRIILLSDDCHIQLLPKTH---RHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWD 234
++ ++ I L+ K +D +++ G +CGL+PIG + T GL+WD
Sbjct: 213 ASYFKLCYMTPTDLIFLIKKNGTLIEYDPQFRNTCIG-NCGLLPIGEATLVKETRGLKWD 271
Query: 235 LDNTETR-FGGLVSTSNIVKGEKVT-VRSDSDLLWTISI 271
+ N T G VS+SN G+ + + D++ + I
Sbjct: 272 VKNWPTSVVTGRVSSSNRFVGDNCCFIDTKDDIILNVEI 310
>sp|O34664|THIN_BACSU Thiamine pyrophosphokinase OS=Bacillus subtilis (strain 168)
GN=thiN PE=1 SV=1
Length = 214
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 11/151 (7%)
Query: 102 GDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGAL 161
GD DSI ++ + ++D TDL + + + P++ I + G
Sbjct: 50 GDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDI------IQIFGIT 103
Query: 162 GGRFDHEAGNINVLYRF--SDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPI 219
GGR DH GNI +LY+ ++I+I L+ HIQ+ P I+ + IP
Sbjct: 104 GGRADHFLGNIQLLYKGVKTNIKIRLIDKQNHIQMFPPGEYD---IEKDENKRYISFIPF 160
Query: 220 GMPSGSTSTTGLQWDLDNTETRFGGLVSTSN 250
+ TG ++ L+N G + SN
Sbjct: 161 SEDIHELTLTGFKYPLNNCHITLGSTLCISN 191
>sp|Q6AYP0|ALLC_RAT Probable allantoicase OS=Rattus norvegicus GN=Allc PE=2 SV=1
Length = 413
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 16 AFMELMTHSSSFLLPST---PTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGA 72
A EL +HS +L+P + P D S Y V QR W H +L + DGG
Sbjct: 142 AITELKSHSWDYLVPMSELKPGDPDSSHNYFFVNSQQR--------WTHIRLNIFPDGGV 193
Query: 73 NRV 75
R+
Sbjct: 194 ARL 196
>sp|Q94469|G3P_DICDI Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium
discoideum GN=gpdA PE=1 SV=2
Length = 335
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 203 IYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSN---IVKGEKVTV 259
+ +++S+E P C ++ I P + D+T RF G V N +V G K+ V
Sbjct: 16 LVLRASLENPECRVLAINEPFMDVKYMVYMFKYDSTHGRFKGTVEDINGEFVVNGNKIHV 75
Query: 260 RSDSD 264
++ D
Sbjct: 76 FAEKD 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,570,271
Number of Sequences: 539616
Number of extensions: 4678598
Number of successful extensions: 10000
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9971
Number of HSP's gapped (non-prelim): 13
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)