Query 047888
Match_columns 274
No_of_seqs 129 out of 1044
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02714 thiamin pyrophosphoki 100.0 6.2E-60 1.3E-64 421.8 25.6 229 43-271 1-229 (229)
2 cd07995 TPK Thiamine pyrophosp 100.0 1.8E-55 3.9E-60 387.4 25.6 203 43-270 1-207 (208)
3 TIGR01378 thi_PPkinase thiamin 100.0 3.8E-55 8.2E-60 384.5 23.6 200 46-269 1-203 (203)
4 KOG3153 Thiamine pyrophosphoki 100.0 3.9E-55 8.6E-60 380.5 18.6 223 38-272 20-249 (250)
5 COG1564 THI80 Thiamine pyropho 100.0 2.6E-49 5.7E-54 347.1 24.2 204 42-273 2-210 (212)
6 PF04263 TPK_catalytic: Thiami 100.0 6.7E-38 1.5E-42 254.9 13.9 118 48-187 1-122 (123)
7 PF04265 TPK_B1_binding: Thiam 99.6 9E-16 2E-20 112.3 4.0 67 200-267 2-68 (68)
8 COG4825 Uncharacterized membra 98.9 5.7E-09 1.2E-13 95.3 9.9 123 16-161 153-302 (395)
9 COG1634 Uncharacterized Rossma 98.1 2.7E-05 5.9E-10 69.2 10.8 74 38-131 50-125 (232)
10 PF01973 MAF_flag10: Protein o 95.8 0.081 1.8E-06 44.7 9.4 51 40-106 24-77 (170)
11 COG2604 Uncharacterized protei 87.3 0.64 1.4E-05 47.0 3.9 46 41-101 225-273 (594)
12 smart00852 MoCF_biosynth Proba 84.7 4.4 9.4E-05 32.7 7.0 65 104-175 16-82 (135)
13 PRK08621 galactose-6-phosphate 84.6 8.1 0.00018 32.3 8.6 48 110-162 17-66 (142)
14 PRK12613 galactose-6-phosphate 83.4 10 0.00022 31.7 8.6 48 110-162 17-65 (141)
15 cd00758 MoCF_BD MoCF_BD: molyb 82.4 5.2 0.00011 32.4 6.6 65 104-175 17-83 (133)
16 cd00886 MogA_MoaB MogA_MoaB fa 82.2 6.2 0.00013 32.8 7.1 66 104-175 18-86 (152)
17 TIGR02133 RPI_actino ribose 5- 80.4 14 0.00031 31.0 8.6 48 110-162 17-69 (148)
18 PF02502 LacAB_rpiB: Ribose/Ga 79.4 15 0.00033 30.4 8.4 48 110-162 16-67 (140)
19 TIGR01118 lacA galactose-6-pho 78.0 19 0.00042 30.0 8.6 48 110-162 17-66 (141)
20 TIGR01120 rpiB ribose 5-phosph 77.7 21 0.00046 29.8 8.8 68 110-188 16-87 (143)
21 PRK12615 galactose-6-phosphate 77.1 20 0.00043 30.9 8.6 48 110-162 17-68 (171)
22 TIGR00689 rpiB_lacA_lacB sugar 75.7 21 0.00044 29.9 8.2 69 109-188 14-86 (144)
23 TIGR00177 molyb_syn molybdenum 75.2 12 0.00026 30.8 6.7 65 104-175 25-91 (144)
24 PRK08622 galactose-6-phosphate 75.2 24 0.00052 30.4 8.6 67 110-188 17-88 (171)
25 TIGR01119 lacB galactose-6-pho 75.0 24 0.00053 30.4 8.6 48 110-162 17-68 (171)
26 PTZ00215 ribose 5-phosphate is 74.8 25 0.00055 29.6 8.5 48 110-162 19-72 (151)
27 COG0698 RpiB Ribose 5-phosphat 74.0 24 0.00051 29.9 8.1 69 109-188 16-89 (151)
28 PRK05571 ribose-5-phosphate is 73.0 31 0.00067 29.0 8.6 68 110-188 17-89 (148)
29 PF00994 MoCF_biosynth: Probab 72.6 7.9 0.00017 31.6 5.0 65 104-175 15-81 (144)
30 TIGR02667 moaB_proteo molybden 72.3 18 0.0004 30.5 7.3 66 104-175 20-88 (163)
31 cd00885 cinA Competence-damage 71.6 13 0.00028 31.6 6.3 66 104-176 17-84 (170)
32 TIGR02478 6PF1K_euk 6-phosphof 69.0 93 0.002 32.9 12.9 103 40-177 390-499 (745)
33 KOG3849 GDP-fucose protein O-f 64.1 9.3 0.0002 35.6 4.0 56 98-178 303-359 (386)
34 cd01141 TroA_d Periplasmic bin 59.7 27 0.00059 29.2 5.9 48 93-140 66-113 (186)
35 COG0412 Dienelactone hydrolase 57.0 11 0.00024 33.7 3.2 68 95-166 58-126 (236)
36 cd00887 MoeA MoeA family. Memb 56.1 34 0.00074 33.0 6.6 64 105-175 194-259 (394)
37 PRK03670 competence damage-ind 55.1 42 0.0009 30.6 6.6 66 105-176 19-86 (252)
38 COG4558 ChuT ABC-type hemin tr 52.9 45 0.00097 31.2 6.4 90 42-133 43-135 (300)
39 PRK09822 lipopolysaccharide co 52.3 37 0.00081 30.9 5.6 76 41-132 22-100 (269)
40 cd08186 Fe-ADH8 Iron-containin 52.2 68 0.0015 30.7 8.0 67 94-168 25-100 (383)
41 TIGR02482 PFKA_ATP 6-phosphofr 47.7 2.4E+02 0.0052 26.4 11.0 103 41-178 1-113 (301)
42 cd08551 Fe-ADH iron-containing 47.5 1E+02 0.0022 29.1 8.4 54 94-147 22-82 (370)
43 cd08181 PPD-like 1,3-propanedi 47.2 96 0.0021 29.3 8.1 65 96-168 26-99 (357)
44 COG0826 Collagenase and relate 47.2 1.2E+02 0.0026 28.9 8.7 106 39-165 61-180 (347)
45 PRK01215 competence damage-ind 46.8 78 0.0017 29.0 7.1 65 104-175 21-87 (264)
46 PRK15454 ethanol dehydrogenase 46.8 96 0.0021 29.9 8.1 52 109-168 67-122 (395)
47 cd08193 HVD 5-hydroxyvalerate 46.5 98 0.0021 29.4 8.0 52 109-168 44-99 (376)
48 PRK03202 6-phosphofructokinase 45.0 2.1E+02 0.0046 26.9 9.9 103 41-178 3-115 (320)
49 PRK03604 moaC bifunctional mol 44.1 60 0.0013 30.6 6.0 71 99-175 161-240 (312)
50 PRK12595 bifunctional 3-deoxy- 43.5 2.1E+02 0.0046 27.4 9.8 84 95-185 201-292 (360)
51 PRK10624 L-1,2-propanediol oxi 43.4 1.1E+02 0.0024 29.2 7.9 52 109-168 48-103 (382)
52 cd01143 YvrC Periplasmic bindi 42.8 86 0.0019 26.0 6.4 50 93-143 57-106 (195)
53 cd03522 MoeA_like MoeA_like. T 42.4 64 0.0014 30.4 5.9 66 104-175 177-244 (312)
54 TIGR02638 lactal_redase lactal 42.4 1.4E+02 0.003 28.5 8.3 52 109-168 47-102 (379)
55 PRK14498 putative molybdopteri 40.7 59 0.0013 33.3 5.8 65 104-175 211-277 (633)
56 PRK09860 putative alcohol dehy 40.0 1.5E+02 0.0033 28.4 8.3 67 93-168 29-104 (383)
57 PF09419 PGP_phosphatase: Mito 38.4 2.5E+02 0.0055 24.0 8.6 83 93-183 15-109 (168)
58 TIGR02530 flg_new flagellar op 36.8 44 0.00096 26.1 3.2 38 107-148 17-54 (96)
59 cd00363 PFK Phosphofructokinas 36.5 1.7E+02 0.0036 27.8 7.8 103 41-178 2-114 (338)
60 cd08190 HOT Hydroxyacid-oxoaci 35.9 2.2E+02 0.0047 27.6 8.7 51 109-167 41-95 (414)
61 PF02568 ThiI: Thiamine biosyn 35.8 79 0.0017 27.8 5.1 83 138-231 101-188 (197)
62 COG2374 Predicted extracellula 35.0 82 0.0018 33.3 5.7 71 94-184 673-744 (798)
63 PRK13347 coproporphyrinogen II 34.8 3.1E+02 0.0066 26.9 9.6 78 102-183 145-236 (453)
64 cd00764 Eukaryotic_PFK Phospho 34.5 3.2E+02 0.0069 29.1 10.1 105 38-177 388-499 (762)
65 cd08172 GlyDH-like1 Glycerol d 34.0 89 0.0019 29.4 5.5 49 111-167 42-91 (347)
66 PRK03379 vitamin B12-transport 33.6 1.2E+02 0.0026 27.1 6.1 48 93-141 69-116 (260)
67 cd08176 LPO Lactadehyde:propan 33.0 2E+02 0.0044 27.3 7.9 50 110-167 47-100 (377)
68 PRK13264 3-hydroxyanthranilate 32.8 31 0.00066 30.0 2.0 77 154-237 36-125 (177)
69 PRK10680 molybdopterin biosynt 32.7 94 0.002 30.3 5.6 65 104-175 202-268 (411)
70 cd06167 LabA_like LabA_like pr 32.6 1.7E+02 0.0037 23.4 6.4 86 96-189 40-132 (149)
71 PF00465 Fe-ADH: Iron-containi 32.5 1.1E+02 0.0025 28.8 6.0 51 109-167 39-93 (366)
72 PRK09534 btuF corrinoid ABC tr 32.4 1.2E+02 0.0026 28.7 6.2 46 93-139 116-161 (359)
73 PF06057 VirJ: Bacterial virul 31.7 1E+02 0.0022 27.0 5.1 34 125-163 45-78 (192)
74 TIGR00200 cinA_nterm competenc 31.7 1.7E+02 0.0036 28.7 7.1 64 104-174 18-83 (413)
75 PF12367 PFO_beta_C: Pyruvate 31.6 72 0.0016 23.2 3.5 30 111-143 9-38 (67)
76 PRK14690 molybdopterin biosynt 31.6 1.1E+02 0.0023 30.0 5.8 64 105-175 219-284 (419)
77 PRK09423 gldA glycerol dehydro 31.1 1.3E+02 0.0027 28.6 6.1 51 109-167 46-99 (366)
78 TIGR01508 rib_reduct_arch 2,5- 30.6 1.5E+02 0.0032 25.8 6.1 45 108-160 101-145 (210)
79 cd08182 HEPD Hydroxyethylphosp 30.3 2.3E+02 0.0049 26.8 7.7 51 109-167 38-92 (367)
80 PLN02564 6-phosphofructokinase 30.0 2.8E+02 0.0061 27.9 8.4 90 41-162 89-187 (484)
81 cd01149 HutB Hemin binding pro 29.9 1.8E+02 0.004 25.0 6.6 47 93-139 55-101 (235)
82 cd08189 Fe-ADH5 Iron-containin 29.7 2.8E+02 0.0061 26.3 8.3 51 110-168 45-99 (374)
83 PF13344 Hydrolase_6: Haloacid 29.7 52 0.0011 25.3 2.7 60 93-161 29-89 (101)
84 PRK09417 mogA molybdenum cofac 29.7 2E+02 0.0044 25.0 6.7 66 105-176 22-92 (193)
85 PTZ00413 lipoate synthase; Pro 29.1 3.3E+02 0.0071 26.7 8.5 108 69-187 209-330 (398)
86 cd08185 Fe-ADH1 Iron-containin 28.9 2.6E+02 0.0057 26.5 7.9 52 109-168 44-99 (380)
87 cd08550 GlyDH-like Glycerol_de 28.8 1.6E+02 0.0035 27.6 6.4 52 109-168 39-93 (349)
88 cd08188 Fe-ADH4 Iron-containin 27.8 2.9E+02 0.0064 26.2 8.0 52 109-168 46-101 (377)
89 cd08179 NADPH_BDH NADPH-depend 27.7 3.9E+02 0.0084 25.4 8.8 52 109-168 42-97 (375)
90 cd00763 Bacterial_PFK Phosphof 27.4 4.3E+02 0.0094 24.8 8.9 103 41-178 2-114 (317)
91 COG1058 CinA Predicted nucleot 27.1 1.6E+02 0.0035 27.0 5.7 62 105-173 20-83 (255)
92 PRK13805 bifunctional acetalde 26.6 2.5E+02 0.0055 30.0 8.0 50 110-167 499-554 (862)
93 KOG0780 Signal recognition par 25.9 5.7E+02 0.012 25.4 9.4 87 93-196 128-222 (483)
94 PLN03028 pyrophosphate--fructo 25.9 4E+02 0.0088 27.6 8.9 104 40-178 80-195 (610)
95 PF01497 Peripla_BP_2: Peripla 25.8 2.3E+02 0.0049 24.1 6.4 51 93-143 57-107 (238)
96 PRK09273 hypothetical protein; 24.9 2.6E+02 0.0056 25.0 6.4 69 109-188 20-94 (211)
97 cd08183 Fe-ADH2 Iron-containin 24.9 2.5E+02 0.0055 26.6 7.0 51 110-168 38-91 (374)
98 PRK14491 putative bifunctional 24.8 1.9E+02 0.0041 29.7 6.4 63 105-174 393-457 (597)
99 cd08170 GlyDH Glycerol dehydro 24.4 2.1E+02 0.0045 26.8 6.2 51 110-168 40-93 (351)
100 PRK10444 UMP phosphatase; Prov 24.3 1.7E+02 0.0038 26.2 5.4 49 93-144 32-80 (248)
101 cd08192 Fe-ADH7 Iron-containin 24.3 3.5E+02 0.0076 25.5 7.8 51 109-167 42-96 (370)
102 cd07766 DHQ_Fe-ADH Dehydroquin 24.2 4.1E+02 0.0088 24.5 8.1 65 94-167 22-93 (332)
103 PF07905 PucR: Purine cataboli 24.0 2E+02 0.0043 22.8 5.2 41 101-141 80-121 (123)
104 COG0541 Ffh Signal recognition 23.1 5E+02 0.011 25.9 8.6 67 93-169 127-200 (451)
105 PF04962 KduI: KduI/IolB famil 23.0 3E+02 0.0065 25.2 6.8 61 209-270 44-105 (261)
106 cd08191 HHD 6-hydroxyhexanoate 22.9 4.7E+02 0.01 24.9 8.4 51 110-168 41-95 (386)
107 TIGR01361 DAHP_synth_Bsub phos 22.9 5.8E+02 0.012 23.1 10.5 85 95-185 108-199 (260)
108 PRK05625 5-amino-6-(5-phosphor 22.5 3.8E+02 0.0083 23.1 7.2 55 97-160 95-149 (217)
109 PTZ00286 6-phospho-1-fructokin 22.5 3.9E+02 0.0084 26.7 7.9 91 41-163 89-188 (459)
110 PRK08207 coproporphyrinogen II 22.3 7.9E+02 0.017 24.5 10.3 76 101-180 261-350 (488)
111 PLN02428 lipoic acid synthase 22.3 5.6E+02 0.012 24.6 8.6 100 69-178 162-274 (349)
112 PLN02699 Bifunctional molybdop 22.1 2.2E+02 0.0047 29.7 6.2 64 105-174 208-273 (659)
113 KOG3043 Predicted hydrolase re 22.0 3E+02 0.0064 25.1 6.3 67 93-171 69-139 (242)
114 PLN02335 anthranilate synthase 22.0 1.7E+02 0.0038 25.7 4.9 50 103-164 25-75 (222)
115 cd08194 Fe-ADH6 Iron-containin 21.9 4.8E+02 0.01 24.7 8.2 50 110-167 42-95 (375)
116 PTZ00287 6-phosphofructokinase 21.7 1.1E+03 0.023 27.2 11.6 105 38-178 835-950 (1419)
117 PRK08007 para-aminobenzoate sy 21.2 2.8E+02 0.0061 23.5 6.0 57 99-167 3-59 (187)
118 PRK14497 putative molybdopteri 21.1 1.8E+02 0.0039 29.6 5.3 64 105-175 205-270 (546)
119 PF11230 DUF3029: Protein of u 20.3 96 0.0021 30.9 3.1 64 91-169 43-106 (487)
120 PRK08208 coproporphyrinogen II 20.2 7.4E+02 0.016 24.0 9.3 72 102-179 134-221 (430)
No 1
>PLN02714 thiamin pyrophosphokinase
Probab=100.00 E-value=6.2e-60 Score=421.76 Aligned_cols=229 Identities=82% Similarity=1.343 Sum_probs=201.5
Q ss_pred EEEEeCCCCCCCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCCeE
Q 047888 43 ALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKV 122 (274)
Q Consensus 43 avIvlng~~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~i 122 (274)
|+|++|+|+|..+..+|++++++|||||||++|++.+...+.+++....+.+++||+|||||||++++++++|+++|+++
T Consensus 1 a~~~~n~~i~~~~~~~~~~a~~~i~aDgGa~~l~~~~~~~~~~~~~~~~~~gi~Pd~iiGDfDSi~~e~~~~~~~~~~~i 80 (229)
T PLN02714 1 ALVVLNQRLPRFTPLLWEHAKLRVCADGGANRLYDEMPLLFPDEDPLAVRNRYKPDVIKGDMDSIRPEVLDFYSNLGTKI 80 (229)
T ss_pred CEEEcCCccHHHHHHHHhcCcEEEEecCcHHHHHhhhhhccccccccccccCcCCCEEEeeccCCCHHHHHHHHHCCCEE
Confidence 68999999987667889999999999999999998544434444444445799999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCeEEEEeCCeEEEEecCCceeE
Q 047888 123 VDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHD 202 (274)
Q Consensus 123 i~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~i~li~~~~~i~ll~~g~~~~ 202 (274)
+++|||||+||+||||+++.++.+.......+|+++||+|||+||+||||++|+++.+.++++++++++++++++++++.
T Consensus 81 ~~~~~eKD~TD~e~Al~~~~~~~~~~~~~~~~I~v~Ga~GGRlDH~laNi~~L~~~~~~~i~lid~~~~i~~l~~~~~~~ 160 (229)
T PLN02714 81 VDESHDQDTTDLHKCIAYIRDSTPDLDKSNLCILVLGALGGRFDHEAGNINVLYRFPDLRIVLLSDDCLIRLLPATHRHE 160 (229)
T ss_pred EECCCCcccCHHHHHHHHHHHhccccccCCceEEEEcccCCchHHHHHHHHHHHhcCCceEEEEcCCcEEEEEcCCCeEE
Confidence 99999999999999999999765532233448999999999999999999999998878999999999999998666777
Q ss_pred EEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEEE
Q 047888 203 IYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISI 271 (274)
Q Consensus 203 i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~~ 271 (274)
+.......+++|||||+++++++||++||||||++..+.++.++|+||++.+++++|+++.+++|+|++
T Consensus 161 i~~~~~~~~~~~Slipl~~~~~~vt~~Glky~L~~~~l~~~~~~~vSNe~~~~~v~I~~~~~~~~t~~~ 229 (229)
T PLN02714 161 IHIDSSVEGPHCGLIPIGGPSASTTTTGLQWNLDNTEMRFGGLISTSNIVKEDKVTVESDSDLLWTISI 229 (229)
T ss_pred EeecCCCCCCEEEEEECCCCcceEEeeCceeeCCCCeeeCCCceEEeeEEcCCEEEEEeCCCEEEEeeC
Confidence 754334578999999999888899999999999999999999999999999999999999999999984
No 2
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=100.00 E-value=1.8e-55 Score=387.44 Aligned_cols=203 Identities=38% Similarity=0.633 Sum_probs=187.0
Q ss_pred EEEEeCCCCCCCch--HHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCC
Q 047888 43 ALVVLNQRLPRFAP--LLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGT 120 (274)
Q Consensus 43 avIvlng~~~~~~~--~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~ 120 (274)
|+|++||+++.... .+|++++++|||||||++|++ .++.||++||||||++++++++|+++++
T Consensus 1 ~~Ii~~g~~~~~~~~~~~~~~~~~~i~aDgGa~~l~~---------------~gi~Pd~iiGDfDSi~~~~~~~~~~~~~ 65 (208)
T cd07995 1 ALILLGGPLPDSPLLLKLWKKADLIIAADGGANHLLD---------------LGIVPDLIIGDFDSISPEVLEYYKSKGV 65 (208)
T ss_pred CEEEECCcCCcchhHHHhhccCCEEEEEChHHHHHHH---------------cCCCCCEEEecCcCCCHHHHHHHHhcCC
Confidence 58999999986432 478889999999999999999 9999999999999999999999999999
Q ss_pred eEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcC--CCeEEEEeCCeEEEEecCC
Q 047888 121 KVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFS--DIRIILLSDDCHIQLLPKT 198 (274)
Q Consensus 121 ~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~--~~~i~li~~~~~i~ll~~g 198 (274)
+++++|++||+||+||||+++.++++. +|+++||+|||+||+|+||++|+++. +.+++++++++.++++++|
T Consensus 66 ~~~~~p~~KD~TD~e~Al~~~~~~~~~------~i~i~Ga~GgR~DH~lani~~l~~~~~~~~~~~l~d~~~~i~~l~~g 139 (208)
T cd07995 66 EIIHFPDEKDFTDFEKALKLALERGAD------EIVILGATGGRLDHTLANLNLLLKYAKDGIKIVLIDEQNEIFLLLPG 139 (208)
T ss_pred eEEECCCCCCCCHHHHHHHHHHHcCCC------EEEEEccCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCcEEEEEcCC
Confidence 999999999999999999999999987 99999999999999999999999985 5789999999999999866
Q ss_pred ceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEE
Q 047888 199 HRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTIS 270 (274)
Q Consensus 199 ~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~ 270 (274)
++++.. ...+++|||||++++ ++||++||||||++..+.++.++|+||++.+++++|++++|.+++++
T Consensus 140 -~~~i~~--~~~~~~~Sl~pl~~~-~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~~~I~v~~G~llvi~ 207 (208)
T cd07995 140 -SHTLEL--EEEGKYVSLIPLGEV-TGLTLKGLKYPLDNATLSFGSSLGTSNEFTGEKATVSVESGLLLVIL 207 (208)
T ss_pred -CEEEee--cCCCCEEEEEeccCC-cceEEeCCEEecCCceEeCCCeEEEeEEEeCCeEEEEEccCEEEEEE
Confidence 666743 227999999999986 78999999999999999999999999999999999999999999986
No 3
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=100.00 E-value=3.8e-55 Score=384.47 Aligned_cols=200 Identities=34% Similarity=0.553 Sum_probs=178.5
Q ss_pred EeCC-CCCCCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCCeEEE
Q 047888 46 VLNQ-RLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVD 124 (274)
Q Consensus 46 vlng-~~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~ 124 (274)
|+|| +.+.++..+....+++|||||||++|++ .++.||++||||||++++++++|+++++++++
T Consensus 1 v~gG~~~~~~~~~~~~~~~~~i~aDgGa~~l~~---------------~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~ 65 (203)
T TIGR01378 1 LAGGGPDLELPLRLLKEHDLVIAADGGANHLLK---------------LGLTPDLIVGDFDSIDEEELDFYKKAGVKIIV 65 (203)
T ss_pred CCCCccchHHHHhhccccCEEEEEChHHHHHHH---------------CCCCCCEEEeCcccCCHHHHHHHHHcCCceEE
Confidence 4677 2234433334455799999999999999 99999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcC--CCeEEEEeCCeEEEEecCCceeE
Q 047888 125 ESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFS--DIRIILLSDDCHIQLLPKTHRHD 202 (274)
Q Consensus 125 ~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~--~~~i~li~~~~~i~ll~~g~~~~ 202 (274)
+|+|||+||+|+||+++.+++++ +|+++||+|||+||+|+||++|+++. +.++++++++++++++++| .+.
T Consensus 66 ~~~eKD~TD~e~Al~~~~~~~~~------~i~i~Ga~GgR~DH~lani~~L~~~~~~~~~i~l~d~~~~i~~l~~g-~~~ 138 (203)
T TIGR01378 66 FPPEKDTTDLELALKYALERGAD------EITILGATGGRLDHTLANLNLLLEYAKRGIKVRLIDEQNVIRLLLPG-KYQ 138 (203)
T ss_pred cCCCCCCCHHHHHHHHHHHCCCC------EEEEEcCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCcEEEEEcCC-CEE
Confidence 99999999999999999999887 89999999999999999999999974 4689999999999999877 455
Q ss_pred EEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEE
Q 047888 203 IYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTI 269 (274)
Q Consensus 203 i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i 269 (274)
+. ....+++|||||+++++++||++||||||++..+.++.++|+|||+.+++++|++++|.+|++
T Consensus 139 ~~--~~~~~~~~Sl~pl~~~~~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~~~I~~~~G~ll~i 203 (203)
T TIGR01378 139 IF--KEPKGTYISLLPFGGDAHGLTTKGLKYPLNNAHLKFGGSRGISNEFIGNKATVSVESGILLVI 203 (203)
T ss_pred Ee--cCCCCCEEEEEECCCCcccEEeeCCEeecCCceeeCCCeeEECeeEECCcEEEEEcCCEEEEC
Confidence 43 344689999999997788899999999999999999999999999999999999999999975
No 4
>KOG3153 consensus Thiamine pyrophosphokinase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.9e-55 Score=380.54 Aligned_cols=223 Identities=52% Similarity=0.836 Sum_probs=200.7
Q ss_pred CCCcEEEEEeCCCCC---CCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHH
Q 047888 38 PSLTYALVVLNQRLP---RFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDF 114 (274)
Q Consensus 38 ~~~~~avIvlng~~~---~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~ 114 (274)
...++++++|||+++ ++++.+|++|++++|||||||++|+++. .+..++||+|+||||||++++.+|
T Consensus 20 ~d~~~~lvvLN~~iq~p~~~f~~LWk~A~lRvcaDGgaNrlyd~~~----------~~~~~~Pd~I~GDfDSi~~ev~~y 89 (250)
T KOG3153|consen 20 GDCKSVLVVLNQEIQIPDNRFRLLWKKAKLRVCADGGANRLYDYLS----------DRTSEKPDYICGDFDSITEEVDDY 89 (250)
T ss_pred CCcceEEEEeCCCCCCchHHHHHHHhhhheeEeccCchhhhhhhcc----------cccccCCceeecchhhhhHHHHHH
Confidence 345789999999874 3457899999999999999999999543 235789999999999999999999
Q ss_pred HHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCC--eEEEEeCCeEE
Q 047888 115 YASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDI--RIILLSDDCHI 192 (274)
Q Consensus 115 ~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~--~i~li~~~~~i 192 (274)
|+..|+++++ .|+||.|||.||+++++++....+.....|+++|++||||||+|+|+++||++.+. +++++++.+.+
T Consensus 90 y~~~g~~vV~-~pdQd~TDftKcv~~i~~~~~~~e~~~~~IvvlgglgGRfDq~m~nln~Ly~~~~~~~~i~llt~~~li 168 (250)
T KOG3153|consen 90 YKKNGVTVVH-TPDQDTTDFTKCVKWIQEHKTLTEWKFLNIVVLGGLGGRFDQTMANLNTLYRAVDIQFPIFLLTEDSLI 168 (250)
T ss_pred HHhcCCeeEe-CCCcCcchHHHHHHHHHHhcccccceeeeEEEecccCccHHHHHHhHHHhhehhccccceEEecCCchH
Confidence 9999999985 59999999999999999998887677778999999999999999999999999864 69999999999
Q ss_pred EEecCCceeEE--EEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEE
Q 047888 193 QLLPKTHRHDI--YIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTIS 270 (274)
Q Consensus 193 ~ll~~g~~~~i--~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~ 270 (274)
+++.|| .|++ +++-...++.|||||++.++...|+.||||+|.+..++||+.+|+||.+.++.|+|+++.+++|+|+
T Consensus 169 ~Ll~pg-~h~ie~~v~~~~~~~~CGLiPIGq~~~~ktT~GLkWnl~n~~~~fgglvStsN~~~~~~vtvetd~~liwtm~ 247 (250)
T KOG3153|consen 169 DLLQPG-KHRIELHVNLGMTGKWCGLIPIGQPETVKTTTGLKWNLSNRRMKFGGLVSTSNTYDGEVVTVETDHDLIWTME 247 (250)
T ss_pred hhhcCC-CceEEeccccccccCceeeeecccceeeeeecccccccccceeecceEEeecceeeccEEEEecCCceEEEEE
Confidence 999777 4554 4444556788999999999999999999999999999999999999999999999999999999999
Q ss_pred Ec
Q 047888 271 IK 272 (274)
Q Consensus 271 ~~ 272 (274)
++
T Consensus 248 i~ 249 (250)
T KOG3153|consen 248 IK 249 (250)
T ss_pred ee
Confidence 87
No 5
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-49 Score=347.09 Aligned_cols=204 Identities=29% Similarity=0.452 Sum_probs=181.6
Q ss_pred EEEEEeCCCCCC---CchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhc
Q 047888 42 YALVVLNQRLPR---FAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASL 118 (274)
Q Consensus 42 ~avIvlng~~~~---~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~ 118 (274)
.+++++||+.+. .+...|+ ++.+||||||+++|++ .+++|+++||||||++++++++|+++
T Consensus 2 ~~~~il~g~~~~~~~~~~~~~~-~~~~v~aDgGa~~l~~---------------~gl~P~~~vGDfDSv~~e~~~~~~~~ 65 (212)
T COG1564 2 SAVLILNGGILAPTDRLDYLWK-FDKIVAADGGANHLLE---------------LGLVPDLAVGDFDSVSEELLAYYKEK 65 (212)
T ss_pred ceEEEEcCcccCChhhhhhccc-cceEEEECcHHHHHHH---------------cCCCccEEEecccccCHHHHHHHhhc
Confidence 478888888753 2223344 4569999999999999 99999999999999999999999999
Q ss_pred CCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCC--CeEEEEeCCeEEEEec
Q 047888 119 GTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSD--IRIILLSDDCHIQLLP 196 (274)
Q Consensus 119 g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~--~~i~li~~~~~i~ll~ 196 (274)
.+. +++|++||+||+|+|+++|.++++. +|+++||+|||+||+|+|+.+|+++.. .++.+++++|.++.++
T Consensus 66 ~~~-~~f~~eKd~TD~elAl~~a~e~g~d------~i~i~Ga~GGR~DH~l~nl~ll~~~~~~~~~i~l~~~~n~~~~l~ 138 (212)
T COG1564 66 TVT-IKFPAEKDSTDLELALDEALERGAD------EIVILGALGGRLDHALANLFLLLRPAKSGFKITLISGQNLITPLP 138 (212)
T ss_pred Ccc-eecChhhccchHHHHHHHHHHcCCC------EEEEEecCCChHHHHHHHHHHHHhhhhccceEEEecCCceEEEeC
Confidence 877 7899999999999999999999998 899999999999999999999999853 7899999999999999
Q ss_pred CCceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEEEcc
Q 047888 197 KTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKN 273 (274)
Q Consensus 197 ~g~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~~~~ 273 (274)
+| .|.+ +...+..+|+|+.. .+.++|++|+||||++..+.+++.+++||++.++.++|++.+|++|++++.+
T Consensus 139 ~g-~~~i---~~~~~~~~s~f~~~-~~~~Lti~g~KypL~~~~~~~g~~~siSN~~~~~~~~vs~~~G~~l~~~~~~ 210 (212)
T COG1564 139 PG-QHTI---EKDPGYLYSIFGGE-DVAGLTIKGAKYPLKNADLPFGSSRSISNEFIGDPVTVSLKSGIVLVIASPD 210 (212)
T ss_pred CC-ceEe---ccCCCccEEEEecc-cccceEeccceeeccCccccccceeEEeeeeeCCcEEEEeCCCEEEEEEccC
Confidence 98 4666 34556777777754 5789999999999999999999999999999999999999999999999875
No 6
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=100.00 E-value=6.7e-38 Score=254.92 Aligned_cols=118 Identities=48% Similarity=0.903 Sum_probs=103.5
Q ss_pred CCCCCC-CchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccC-CccccEEeeCCCCCCHHHHHHHHhcCCeEEEc
Q 047888 48 NQRLPR-FAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRR-RYKPDLIKGDMDSIRKEVMDFYASLGTKVVDE 125 (274)
Q Consensus 48 ng~~~~-~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~-~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~ 125 (274)
||++|. ++..+|++++++||||||+|+|++ . ++.||++||||||++++++++|+++|++++++
T Consensus 1 ~~~~p~~~~~~l~~~~~~~i~aDgGa~~l~~---------------~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~ 65 (123)
T PF04263_consen 1 NQQLPKDFFKNLWKNADFIIAADGGANRLYE---------------LFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHF 65 (123)
T ss_dssp STTS-TTHHHHHHHTTSEEEEETTHHHHHHH---------------TTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE
T ss_pred CCCCCHHHHHhhhhcCCEEEEEchHHHHHHH---------------hcCCCCCEEEecCCCCChHHHHHHHhhccceecc
Confidence 788887 557889999999999999999999 8 99999999999999999999999999999988
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcC--CCeEEEEe
Q 047888 126 SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFS--DIRIILLS 187 (274)
Q Consensus 126 ~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~--~~~i~li~ 187 (274)
| +||+||+||||+++.+.++. +|+++||+|||+||+|+||++|+++. +.++++++
T Consensus 66 p-~kD~TD~e~Al~~~~~~~~~------~i~v~Ga~GgR~DH~lanl~~l~~~~~~~~~i~lid 122 (123)
T PF04263_consen 66 P-EKDYTDLEKALEYAIEQGPD------EIIVLGALGGRFDHTLANLNLLYKYKKRGIKIVLID 122 (123)
T ss_dssp --STTS-HHHHHHHHHHHTTTS------EEEEES-SSSSHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred c-ccccCHHHHHHHHHHHCCCC------EEEEEecCCCcHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6 99999999999999999888 99999999999999999999999987 57888886
No 7
>PF04265 TPK_B1_binding: Thiamin pyrophosphokinase, vitamin B1 binding domain; InterPro: IPR007373 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0009229 thiamine diphosphate biosynthetic process; PDB: 3LM8_B 1IG0_A 3CQ9_A 3L8M_B 3IHK_B 3MEL_B 2HH9_A 2F17_B 1IG3_B 2G9Z_A ....
Probab=99.59 E-value=9e-16 Score=112.29 Aligned_cols=67 Identities=28% Similarity=0.477 Sum_probs=58.8
Q ss_pred eeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEE
Q 047888 200 RHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLW 267 (274)
Q Consensus 200 ~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~ 267 (274)
+|+++.+...+|++|||||+++++. +|++||||||+++.+.++.++++||++.++.++|++++|.++
T Consensus 2 ~h~i~~~~~~~g~~~Sl~pl~~~~~-vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~~~i~i~~G~~l 68 (68)
T PF04265_consen 2 THEIKKDEGYEGKYVSLFPLGEPVT-VTIKGLKYPLDNYTLSFGSSIGISNEFIEDSAEISISSGMLL 68 (68)
T ss_dssp EEEEE-BTTCCEEEEEEEESSSEEE-EEEESBSSEEEEEEEBTTTBTEEEEEBSSSCEEEEEEESSEE
T ss_pred cEEEEECCCccCCEEEEEECcCCeE-EEEeCCEEECccceecCCCeeEECeEEECCcEEEEEecCcCC
Confidence 6778765555579999999998666 999999999999999999999999999999999999988764
No 8
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=5.7e-09 Score=95.33 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=99.6
Q ss_pred hhHHhhhhccccccCCCCCCCC---CCCcEEEEEeCCCCC-CC---chHHh-ccCCEEEEEechHHHHHhhcCCCCCCCC
Q 047888 16 AFMELMTHSSSFLLPSTPTDSR---PSLTYALVVLNQRLP-RF---APLLW-QHAKLRLCADGGANRVYDELPQLFPHED 87 (274)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~avIvlng~~~-~~---~~~l~-~~~~~~I~aDgGa~~l~~~~~~~~~~~~ 87 (274)
-|+++...+.++|...-..|-. -.+++++|+.-++-- +. +++++ +...+.|+|||+|+.+.+
T Consensus 153 NTi~fiksE~pllidg~gIPD~~n~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdGaAD~l~~---------- 222 (395)
T COG4825 153 NTIEFIKSESPLLIDGIGIPDLDNDLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGAADVLRK---------- 222 (395)
T ss_pred cHHHHHhccChhhhcCCCCCcccchhcccEEEEEeCCCChHhHHHHHHHHHHhhCCEEEEccchHHHHHH----------
Confidence 3788889999999998888833 557889999877642 21 23445 455789999999999999
Q ss_pred cccccCCccccEEeeCCCCCCHHHH-------------------HHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCC
Q 047888 88 PSDIRRRYKPDLIKGDMDSIRKEVM-------------------DFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNL 148 (274)
Q Consensus 88 ~~~~~~~i~Pd~iiGDfDSi~~~~~-------------------~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~ 148 (274)
.|++|++||||.||++.+.+ |.++..|+--..||.---+|| +|+-++.-+++.
T Consensus 223 -----~GykP~lIvGdp~~i~~~aLR~ga~vvlpad~dGhApGleRiQdLGvgAmTFP~~gsstD--lAllLAd~hga~- 294 (395)
T COG4825 223 -----AGYKPQLIVGDPDQISTEALRCGAKVVLPADADGHAPGLERIQDLGVGAMTFPAAGSSTD--LALLLADHHGAA- 294 (395)
T ss_pred -----cCCCcceeecCcchhhHHHHhcccceeeccCCCCCCchHHHHHhcCcceeeccCCCchhh--HHHHHhhccCcc-
Confidence 99999999999999999875 777888888888998888888 788888888887
Q ss_pred cCCCcEEEEEecC
Q 047888 149 EKSNLRILVAGAL 161 (274)
Q Consensus 149 ~~~~~~I~i~Ga~ 161 (274)
.++.+|..
T Consensus 295 -----~lv~vG~~ 302 (395)
T COG4825 295 -----LLVTVGHR 302 (395)
T ss_pred -----eeEecCCc
Confidence 78887765
No 9
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=98.12 E-value=2.7e-05 Score=69.19 Aligned_cols=74 Identities=22% Similarity=0.216 Sum_probs=54.4
Q ss_pred CCCcEEEEEeCCCCCCCchHHhc--cCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHH
Q 047888 38 PSLTYALVVLNQRLPRFAPLLWQ--HAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFY 115 (274)
Q Consensus 38 ~~~~~avIvlng~~~~~~~~l~~--~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~ 115 (274)
..++.+.||.|||- +...++ .+.++|+|||.++.+++ .|+.||++|+|+|= +++.+-..
T Consensus 50 i~g~~v~vvG~gP~---l~e~~~~~~~~~vi~AdgA~~~l~~---------------~gi~pDiiVTDlDg-d~e~~~~~ 110 (232)
T COG1634 50 IEGREVAVVGAGPS---LEEEIKGLSSEVVIAADGAVSALLE---------------RGIRPDIIVTDLDG-DPEDLLSC 110 (232)
T ss_pred ccCCEEEEECCCCc---HhhhhcccccceEEeccHHHHHHHH---------------cCCCCcEEEecCCC-CHHHHHHh
Confidence 44788999999974 222232 36899999999999999 99999999999996 55555555
Q ss_pred HhcCCeEEEcCCCCCh
Q 047888 116 ASLGTKVVDESHDQDT 131 (274)
Q Consensus 116 ~~~g~~ii~~~~dKD~ 131 (274)
.++|.-++.| +.-|.
T Consensus 111 ~~~g~i~VVH-AHGDN 125 (232)
T COG1634 111 TAKGSIVVVH-AHGDN 125 (232)
T ss_pred hccCCEEEEE-ecCcC
Confidence 6677655555 34443
No 10
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=95.81 E-value=0.081 Score=44.70 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=38.6
Q ss_pred CcEEEEEeCCCC-CCCchHH--hccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCC
Q 047888 40 LTYALVVLNQRL-PRFAPLL--WQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDS 106 (274)
Q Consensus 40 ~~~avIvlng~~-~~~~~~l--~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDS 106 (274)
...|+|++|||= ...+..+ .++.-++||||..+..+.+ .|++||++|- +|.
T Consensus 24 ~~~~~IvgaGPSL~~~i~~lk~~~~~~~iia~~sa~~~L~~---------------~gI~Pd~~v~-~D~ 77 (170)
T PF01973_consen 24 GKPAIIVGAGPSLDKNIELLKENRNKAIIIAVNSALKALLK---------------NGIKPDFVVS-IDP 77 (170)
T ss_pred CCeEEEEecCCCHHHHHHHHHhcccCcEEEEecHHHHHHHH---------------cCceEEEEEE-cCC
Confidence 367999999974 2222211 2345789999999999998 9999999988 776
No 11
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.31 E-value=0.64 Score=47.00 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=34.7
Q ss_pred cEEEEEeCCCCCC-CchHH--hccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEe
Q 047888 41 TYALVVLNQRLPR-FAPLL--WQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIK 101 (274)
Q Consensus 41 ~~avIvlng~~~~-~~~~l--~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~ii 101 (274)
..|+||.+||=-+ .++.+ .++-..++|||+.+.-|.+ .|++||++|
T Consensus 225 ~~aiIVSaGPSL~Kql~lLK~y~~k~~IFcadsal~~L~k---------------~GIkPDyVc 273 (594)
T COG2604 225 EPAIIVSAGPSLEKQLPLLKKYQDKATIFCADSALPILAK---------------HGIKPDYVC 273 (594)
T ss_pred CceEEEcCCcChhhccHHHHhcccceEEEECCCcchHHHh---------------cCCCCCeEE
Confidence 4699999997422 12211 2344679999999999999 999999997
No 12
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=84.74 E-value=4.4 Score=32.74 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcC-CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDES-HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~-~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.|+-.+-+.+++++.|.++..+. .-.|..+...+++.+.+. ++ -|++.|++| |+-|++-.-+.-+
T Consensus 16 ~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~-~d------liittGG~g~g~~D~t~~~l~~~ 82 (135)
T smart00852 16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALER-AD------LVITTGGTGPGPDDVTPEAVAEA 82 (135)
T ss_pred ccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhC-CC------EEEEcCCCCCCCCcCcHHHHHHH
Confidence 47877788889999996553221 125667788888877653 45 788999998 8999999987655
No 13
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=84.60 E-value=8.1 Score=32.28 Aligned_cols=48 Identities=25% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCeEEEcCCC--CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYASLGTKVVDESHD--QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~d--KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
.++++++++|.+++.+.++ -|+.|+..++......+.. +.=++++++|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~-----~~GIliCGTG 66 (142)
T PRK08621 17 VVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSED-----NLGIVIDAYG 66 (142)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCC-----ceEEEEcCCC
Confidence 6788999999999888773 4889988888777765543 2566667676
No 14
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=83.40 E-value=10 Score=31.72 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
.++++++++|.+++.+.++ -|+.|+..++..+...+.. +.=++++++|
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~-----~~GIliCGtG 65 (141)
T PRK12613 17 LIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEG-----RLGIMVDAYG 65 (141)
T ss_pred HHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHcCCC-----ceEEEEcCCC
Confidence 6788999999999888764 3889988888777765543 2566777777
No 15
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=82.38 E-value=5.2 Score=32.38 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-+.+.+++.|.++.....- .|.-.+..+++.+.+. ++ -|++.|++| |+.||+-.-+.-+
T Consensus 17 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~-~D------lvittGG~g~g~~D~t~~ai~~~ 83 (133)
T cd00758 17 EDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASRE-AD------LVLTTGGTGVGRRDVTPEALAEL 83 (133)
T ss_pred EEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhc-CC------EEEECCCCCCCCCcchHHHHHHh
Confidence 4887778888899999877655333 4445577777777655 45 788899998 6999998877554
No 16
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=82.19 E-value=6.2 Score=32.79 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCCCCh-hHHHHHHHHHHHh-CCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHDQDT-TDLHKCVAYIRDC-TPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~dKD~-TD~ekAl~~~~~~-~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-..+++++.|.++..+..-+|+ -++..+++.+.+. .++ -|+..|++| |+.|++-.-+.-+
T Consensus 18 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~D------lVittGG~s~g~~D~t~~al~~~ 86 (152)
T cd00886 18 EDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVD------LILTTGGTGLAPRDVTPEATRPL 86 (152)
T ss_pred ccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCC------EEEECCCcCCCCCcCcHHHHHHH
Confidence 6888888888999999877665444444 4577778777652 344 788888888 6999977766544
No 17
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=80.43 E-value=14 Score=31.00 Aligned_cols=48 Identities=19% Similarity=0.032 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCeEEEcCC-----CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYASLGTKVVDESH-----DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~-----dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
.++++++++|.+++.+.+ ..|+.|+..++-.....+.. +.=++++++|
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~-----~~GIliCGtG 69 (148)
T TIGR02133 17 ALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAA-----DLGIVIGGSG 69 (148)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCC-----ceEEEEcCCC
Confidence 678899999999988876 24688887777777655443 2667777777
No 18
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=79.40 E-value=15 Score=30.45 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCeEEEcCCCC----ChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYASLGTKVVDESHDQ----DTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~dK----D~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
.++++++++|.+++.+.+.. |+.|+...+-.+...+.. +.-++++++|
T Consensus 16 ~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~-----d~GIliCgtG 67 (140)
T PF02502_consen 16 AIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEA-----DRGILICGTG 67 (140)
T ss_dssp HHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSS-----SEEEEEESSS
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccC-----CeEEEEcCCC
Confidence 67899999999999998887 788888888777665543 2777888887
No 19
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=77.96 E-value=19 Score=29.99 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCeEEEcCC--CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYASLGTKVVDESH--DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~--dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
.++++++++|.+++.+.+ .-|+.|+...+......+.. +.=++++++|
T Consensus 17 ~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~-----~~GIliCGtG 66 (141)
T TIGR01118 17 VIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQ-----NLGIVIDAYG 66 (141)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCC-----ceEEEEcCCC
Confidence 678899999999988876 34888887777776655433 2566667676
No 20
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=77.68 E-value=21 Score=29.79 Aligned_cols=68 Identities=25% Similarity=0.240 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCeEEEcCC----CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCeEEE
Q 047888 110 EVMDFYASLGTKVVDESH----DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIIL 185 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~----dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~i~l 185 (274)
.++++++++|.+++.+.+ .-|+.|+...+-.....+.. +.-++++++|= +---..-|+++++.-+
T Consensus 16 ~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~-----~~GIliCGtGi------G~siaANK~~GIraa~ 84 (143)
T TIGR01120 16 EIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEV-----DGGILICGTGI------GMSIAANKFAGIRAAL 84 (143)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCC-----ceEEEEcCCcH------HHHHHHhcCCCeEEEE
Confidence 678889999999987755 23788877777776655433 26777788871 1111223666666555
Q ss_pred EeC
Q 047888 186 LSD 188 (274)
Q Consensus 186 i~~ 188 (274)
..+
T Consensus 85 ~~d 87 (143)
T TIGR01120 85 CSE 87 (143)
T ss_pred ECC
Confidence 554
No 21
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=77.13 E-value=20 Score=30.93 Aligned_cols=48 Identities=21% Similarity=0.062 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCeEEEcCC----CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYASLGTKVVDESH----DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~----dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
.++++++++|.+++.+.+ .-|+.|+..++..+...+.. +.-++++++|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~-----d~GIliCGTG 68 (171)
T PRK12615 17 AVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQA-----DLGVCICGTG 68 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC-----CEEEEEcCCc
Confidence 678899999999988776 34788988888777765543 2677788887
No 22
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=75.67 E-value=21 Score=29.92 Aligned_cols=69 Identities=23% Similarity=0.193 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCeEEEcCC----CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCeEE
Q 047888 109 KEVMDFYASLGTKVVDESH----DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRII 184 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~~----dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~i~ 184 (274)
+.++++++++|.+++.+.+ .-|+.|+..++..+...+.. +.=++++++|= +---..-|+++++.-
T Consensus 14 ~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~-----~~GIliCGtGi------G~siaANK~~GIraa 82 (144)
T TIGR00689 14 SEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEV-----SLGILICGTGI------GMSIAANKFKGIRAA 82 (144)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC-----ceEEEEcCCcH------HHHHHHhcCCCeEEE
Confidence 3678899999999988755 34889988888777765543 26777777771 111122366666555
Q ss_pred EEeC
Q 047888 185 LLSD 188 (274)
Q Consensus 185 li~~ 188 (274)
+..+
T Consensus 83 ~~~d 86 (144)
T TIGR00689 83 LCVD 86 (144)
T ss_pred EECC
Confidence 5554
No 23
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=75.20 E-value=12 Score=30.77 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCC-CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESH-DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~-dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-+.+.+++.|.++..... ..|..++..+++.+.+ ..+ -|++.|++| |+-|++-.-+.-+
T Consensus 25 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-~~D------liIttGG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 25 YDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVD-EAD------VVLTTGGTGVGPRDVTPEALEEL 91 (144)
T ss_pred EeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHh-CCC------EEEECCCCCCCCCccHHHHHHHh
Confidence 488888888889999988775543 3345567888887765 344 788888888 5999988877654
No 24
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=75.18 E-value=24 Score=30.42 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCeEEEcCC----CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHH-HHhcCCCeEE
Q 047888 110 EVMDFYASLGTKVVDESH----DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINV-LYRFSDIRII 184 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~----dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~-L~~~~~~~i~ 184 (274)
.++++++++|.+|+.+.+ .-|+.|+..++..+...+.. +.=++++++|= -+++ .-|+++++.-
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~-----d~GIliCGTGi-------G~siaANKv~GIRAA 84 (171)
T PRK08622 17 AVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEA-----DLGVCICGTGV-------GISNAVNKVPGIRSA 84 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCC-----cEEEEEcCCcH-------HHHHHHhcCCCeEEE
Confidence 678899999999998876 34788888888777765543 26777888871 1222 2356665555
Q ss_pred EEeC
Q 047888 185 LLSD 188 (274)
Q Consensus 185 li~~ 188 (274)
+..+
T Consensus 85 ~~~d 88 (171)
T PRK08622 85 LVRD 88 (171)
T ss_pred EeCC
Confidence 5544
No 25
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=75.05 E-value=24 Score=30.39 Aligned_cols=48 Identities=21% Similarity=0.070 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCeEEEcCCC----CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYASLGTKVVDESHD----QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~d----KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
.++++++++|.+|+.+.+. -|+.|+..++..+...+.. +.=++++++|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~-----~~GIliCGTG 68 (171)
T TIGR01119 17 EVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEA-----DLGVCICGTG 68 (171)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCC-----CEEEEEcCCc
Confidence 6788999999999887763 3688887777777665533 2677777777
No 26
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=74.79 E-value=25 Score=29.64 Aligned_cols=48 Identities=17% Similarity=0.078 Sum_probs=34.8
Q ss_pred HHHHHHHh--cCCeEEEcCCC----CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYAS--LGTKVVDESHD----QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~--~g~~ii~~~~d----KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
.+++++++ +|.+++.+.++ -|+.|+...+......+.. +.-++++++|
T Consensus 19 ~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~-----~~GIliCGtG 72 (151)
T PTZ00215 19 EIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEA-----DTGILVCGSG 72 (151)
T ss_pred HHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCC-----cEEEEEcCCc
Confidence 67888888 89899888763 3788877777666655443 2677778777
No 27
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=73.95 E-value=24 Score=29.87 Aligned_cols=69 Identities=25% Similarity=0.182 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCeEEEc---CCC--CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCeE
Q 047888 109 KEVMDFYASLGTKVVDE---SHD--QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRI 183 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~---~~d--KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~i 183 (274)
..+.++++++|.+++.+ ..+ -|++|+.+.+......+.. +.-++++++|= +-.-.+-|+++++.
T Consensus 16 ~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~-----d~GIliCGTGi------G~~iaANKv~Gira 84 (151)
T COG0698 16 EIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEA-----DLGILICGTGI------GMSIAANKVPGIRA 84 (151)
T ss_pred HHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCC-----CeeEEEecCCh------hHHHHhhccCCeEE
Confidence 36788999999999873 333 6899988888777665422 26777777771 12222345566554
Q ss_pred EEEeC
Q 047888 184 ILLSD 188 (274)
Q Consensus 184 ~li~~ 188 (274)
-+..+
T Consensus 85 Al~~D 89 (151)
T COG0698 85 ALVSD 89 (151)
T ss_pred EEecC
Confidence 44443
No 28
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=73.01 E-value=31 Score=28.99 Aligned_cols=68 Identities=25% Similarity=0.233 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCeEEEcCC-----CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCeEE
Q 047888 110 EVMDFYASLGTKVVDESH-----DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRII 184 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~-----dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~i~ 184 (274)
.++++++++|.+++.+.+ .-|+.|+...+......+.. +.=++++++|= +---..-|+++++.-
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~-----~~GIliCGtGi------G~siaANK~~GIRAA 85 (148)
T PRK05571 17 EIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEA-----DRGILICGTGI------GMSIAANKVKGIRAA 85 (148)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCC-----CEEEEEcCCcH------HHHHHHhcCCCeEEE
Confidence 678899999999988765 23788887777776665533 26777777772 111122366666655
Q ss_pred EEeC
Q 047888 185 LLSD 188 (274)
Q Consensus 185 li~~ 188 (274)
+..+
T Consensus 86 ~~~d 89 (148)
T PRK05571 86 LCHD 89 (148)
T ss_pred EECC
Confidence 5554
No 29
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=72.56 E-value=7.9 Score=31.56 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHhcCCeEEEc-CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDE-SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~-~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-..+++++.|.++..+ .-..|..+...++..+.+.. + -|+..|++| |+-|++..-+.-+
T Consensus 15 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~-D------~VittGG~g~~~~D~t~~a~~~~ 81 (144)
T PF00994_consen 15 RDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRA-D------LVITTGGTGPGPDDVTPEALAEA 81 (144)
T ss_dssp EBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTT-S------EEEEESSSSSSTTCHHHHHHHHH
T ss_pred EEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccC-C------EEEEcCCcCcccCCcccHHHHHh
Confidence 4666666778888888766532 23357788888887776665 4 799999998 6999998877643
No 30
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=72.34 E-value=18 Score=30.48 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHH-hCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRD-CTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~-~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.|+-.+-+.+++++.|.++..+..- .|.-++..+++.+.+ ...+ -|++.|++| |.-|++-.-+.-+
T Consensus 20 ~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~D------lVIttGGtg~g~~D~t~eal~~l 88 (163)
T TIGR02667 20 DDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQ------VILITGGTGFTGRDVTPEALEPL 88 (163)
T ss_pred CCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCC------EEEECCCcCCCCCCCcHHHHHHH
Confidence 5887777888899999877654333 344567788877754 4455 788889988 6999988877554
No 31
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=71.65 E-value=13 Score=31.65 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=47.3
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcC-CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDES-HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVLY 176 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~-~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L~ 176 (274)
.|+-.+-..+++++.|.++.... ...|..++..+++.+.+ ..+ -|++.|++| |+-|++-.-+.-+.
T Consensus 17 ~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~-~~d------lVIttGG~G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 17 VDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE-RAD------LVITTGGLGPTHDDLTREAVAKAF 84 (170)
T ss_pred EEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-CCC------EEEECCCCCCCCCChHHHHHHHHh
Confidence 47766777788888898765432 23455557888888765 344 788889998 69999998887643
No 32
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=69.01 E-value=93 Score=32.92 Aligned_cols=103 Identities=12% Similarity=0.172 Sum_probs=67.5
Q ss_pred CcEEEEEeCCCCCCC---ch----HHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHH
Q 047888 40 LTYALVVLNQRLPRF---AP----LLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVM 112 (274)
Q Consensus 40 ~~~avIvlng~~~~~---~~----~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~ 112 (274)
.+.+++..|||-|-. .. ....+..-++++=+|..=|++ ||+..++....
T Consensus 390 ~rIaIltsGG~apGmNaair~vv~~a~~~g~~V~Gi~~G~~GL~~------------------------~~~~~l~~~~v 445 (745)
T TIGR02478 390 LRIAIIHVGAPAGGMNAATRSAVRYAIARGHTVIAIHNGFSGLAR------------------------GDVRELTWSDV 445 (745)
T ss_pred eEEEEEecCCCchhHHHHHHHHHHHHHhCCCEEEEEecChhhhcc------------------------CCeecCCHHHH
Confidence 345777779988742 11 222334568999999998886 23555677766
Q ss_pred HHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHh
Q 047888 113 DFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYR 177 (274)
Q Consensus 113 ~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~ 177 (274)
+.+...|=.++.-......-|++++++.+.+++-+ -++++|+.| ++.....|.+
T Consensus 446 ~~~~~~GGt~LgtsR~~~~~~~~~i~~~l~~~~Id------~LivIGGdg-----s~~~a~~L~~ 499 (745)
T TIGR02478 446 EGWVGEGGSELGTNRELPGKDLGMIAYYFQKHKID------GLLIIGGFE-----AFEALLQLEQ 499 (745)
T ss_pred HHHHhcCCcccccCCCCchhHHHHHHHHHHHcCCC------EEEEeCChH-----HHHHHHHHHH
Confidence 66665532233222211145899999999999887 899999988 6666666665
No 33
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.12 E-value=9.3 Score=35.57 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=39.2
Q ss_pred cEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHH-HHHH
Q 047888 98 DLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNI-NVLY 176 (274)
Q Consensus 98 d~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani-~~L~ 176 (274)
-++--|=|+.=+|+-+.+...++++.+++||.-+||+ || =||.||+++|- +...
T Consensus 303 VfVAsDs~hmi~Eln~aL~~~~i~vh~l~pdd~y~dL--aI-----------------------lGqadhFiGNCvSsfs 357 (386)
T KOG3849|consen 303 VFVASDSDHMIDELNEALKPYEIEVHRLEPDDMYTDL--AI-----------------------LGQADHFIGNCVSSFS 357 (386)
T ss_pred EEEeccchhhhHHHHHhhcccceeEEecCcccchhhh--hh-----------------------hcccchhhhhhHHHHH
Confidence 3445566777777777777778888888888888882 22 17889999994 4443
Q ss_pred hc
Q 047888 177 RF 178 (274)
Q Consensus 177 ~~ 178 (274)
.+
T Consensus 358 af 359 (386)
T KOG3849|consen 358 AF 359 (386)
T ss_pred HH
Confidence 33
No 34
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=59.72 E-value=27 Score=29.18 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=31.4
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHH
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAY 140 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~ 140 (274)
....||+|++.-.+..++..+.+++.|++++..+...+..+...+++.
T Consensus 66 l~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~ 113 (186)
T cd01141 66 VALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKF 113 (186)
T ss_pred hccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHH
Confidence 468899999865444445888999999888766543333343344433
No 35
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.99 E-value=11 Score=33.73 Aligned_cols=68 Identities=22% Similarity=0.237 Sum_probs=41.0
Q ss_pred ccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEe-cCCCChh
Q 047888 95 YKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAG-ALGGRFD 166 (274)
Q Consensus 95 i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~G-a~GGR~D 166 (274)
+.||+.-..-++...+..+.....+ .+.+.++.+-..|...++.++.++..- ...+|.++| .+||++=
T Consensus 58 ~~Pdl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~a~~~~L~~~~~~---~~~~ig~~GfC~GG~~a 126 (236)
T COG0412 58 LAPDLYGRQGDPTDIEDEPAELETG-LVERVDPAEVLADIDAALDYLARQPQV---DPKRIGVVGFCMGGGLA 126 (236)
T ss_pred EechhhccCCCCCcccccHHHHhhh-hhccCCHHHHHHHHHHHHHHHHhCCCC---CCceEEEEEEcccHHHH
Confidence 4477776555444443111111111 223345678889999999999987611 123799999 7788763
No 36
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=56.12 E-value=34 Score=32.97 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHhcCCeEEEcCCCCCh-hHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 105 DSIRKEVMDFYASLGTKVVDESHDQDT-TDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 105 DSi~~~~~~~~~~~g~~ii~~~~dKD~-TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
||-.+-+.+.+++.|.++..+..-+|+ ..+..+|+.+.+. ++ -|+..|++| |+.|++-.-+.-+
T Consensus 194 dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~-~D------liittGG~s~g~~D~~~~al~~~ 259 (394)
T cd00887 194 DSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEE-AD------VVITSGGVSVGDYDFVKEVLEEL 259 (394)
T ss_pred EChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhC-CC------EEEEeCCCCCCcchhHHHHHHhC
Confidence 777777888899999888777655554 5677778777654 44 788889888 7999998877765
No 37
>PRK03670 competence damage-inducible protein A; Provisional
Probab=55.10 E-value=42 Score=30.59 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHhcCCeEEEcCC-CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHHH
Q 047888 105 DSIRKEVMDFYASLGTKVVDESH-DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVLY 176 (274)
Q Consensus 105 DSi~~~~~~~~~~~g~~ii~~~~-dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L~ 176 (274)
|+-..-..+.+.+.|.++..... ..|.-++..+++.+.+..++ -|++.|++| +.-|.|..-+.-+.
T Consensus 19 dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~D------lVIttGGlGpt~dD~T~eava~a~ 86 (252)
T PRK03670 19 DSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPE------VLVISGGLGPTHDDVTMLAVAEAL 86 (252)
T ss_pred ehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCC------EEEECCCccCCCCCchHHHHHHHh
Confidence 66555667778888987754322 34555677888877665455 799999998 59999988876654
No 38
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=52.90 E-value=45 Score=31.23 Aligned_cols=90 Identities=20% Similarity=0.171 Sum_probs=56.8
Q ss_pred EEEEEeCCCCCCCchHHhccCCEEEEEechHHHH--HhhcCCCCCCCC-cccccCCccccEEeeCCCCCCHHHHHHHHhc
Q 047888 42 YALVVLNQRLPRFAPLLWQHAKLRLCADGGANRV--YDELPQLFPHED-PSDIRRRYKPDLIKGDMDSIRKEVMDFYASL 118 (274)
Q Consensus 42 ~avIvlng~~~~~~~~l~~~~~~~I~aDgGa~~l--~~~~~~~~~~~~-~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~ 118 (274)
.=++-+||.+-++... +-..+-+|+.|.-..+= .+-++++--.-. +.|.=..++||++||+=++-.+++++.++..
T Consensus 43 ~riV~~ggtvtEiiyA-LGa~~~iVgrD~TS~~P~a~~klP~VGy~r~LaaEGILslkPdlvi~~~~aGP~~vl~qLraa 121 (300)
T COG4558 43 ERIVALGGTVTEIIYA-LGAEDRIVGRDSTSSYPAAALKLPDVGYMRQLAAEGILSLKPDLVIGSEGAGPATVLDQLRAA 121 (300)
T ss_pred eeEEEecccHHHHHHH-hCCCceeEEeecCCcCchHHhcCCccchhhhcCcccceecCCCEEEeecccCcHHHHHHHHHc
Confidence 3455667776554322 23447789998755443 222222110000 1122356889999999999999999999999
Q ss_pred CCeEEEcCCCCChhH
Q 047888 119 GTKVVDESHDQDTTD 133 (274)
Q Consensus 119 g~~ii~~~~dKD~TD 133 (274)
|++++..| +++.-|
T Consensus 122 gV~vv~v~-~~~~~~ 135 (300)
T COG4558 122 GVPVVTVP-EQPTLD 135 (300)
T ss_pred CCcEEEcC-CCCCHH
Confidence 99999875 666555
No 39
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=52.27 E-value=37 Score=30.89 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=50.3
Q ss_pred cEEEEEeCCCCC-CCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccc-cEEeeCCCCCCHHHHHHHH-h
Q 047888 41 TYALVVLNQRLP-RFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKP-DLIKGDMDSIRKEVMDFYA-S 117 (274)
Q Consensus 41 ~~avIvlng~~~-~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~P-d~iiGDfDSi~~~~~~~~~-~ 117 (274)
.-++|++.|+-. .+....+..-+ +||+.|.+..+.. .+++| -+++-|-+-....--.+|+ .
T Consensus 22 ~~v~i~~SG~sak~~Pl~~~~~~~-~Ia~NGs~~~~~~---------------~~ikP~~Yv~tD~~F~~q~~~~F~~~~ 85 (269)
T PRK09822 22 EDCIIFLSGPTSRKTPLSLLRMKD-VIAVNGSVQYLLN---------------NNVKPFLYLLTDVRFLHRRREDFYNFS 85 (269)
T ss_pred CCEEEEecCcccccCchHHhccCC-EEEEccHHHHHhh---------------cCCceEEEEeeccchhhhCHHHHHHHh
Confidence 347888888764 44445566655 8999999999998 99999 5679998877543222222 1
Q ss_pred cCCeEEEcCCCCChh
Q 047888 118 LGTKVVDESHDQDTT 132 (274)
Q Consensus 118 ~g~~ii~~~~dKD~T 132 (274)
+..+.....+||.+.
T Consensus 86 r~S~~~~~~~d~~~~ 100 (269)
T PRK09822 86 RNSQFTIVNLDVYEQ 100 (269)
T ss_pred hhcceeeecHHHhcc
Confidence 233444455677665
No 40
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=52.23 E-value=68 Score=30.68 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=44.9
Q ss_pred CccccEEeeCCCCCC-----HHHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-C
Q 047888 94 RYKPDLIKGDMDSIR-----KEVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-R 164 (274)
Q Consensus 94 ~i~Pd~iiGDfDSi~-----~~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R 164 (274)
+.+.-++|.|=-+.. +++.+.++..|+++..|+ ++++..+.+++++.+++.+.+ -|+.+| || -
T Consensus 25 g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D------~IIaiG--GGS~ 96 (383)
T cd08186 25 GISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQ------AVIAIG--GGSP 96 (383)
T ss_pred CCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCC------EEEEeC--CccH
Confidence 445556666633322 456777787787766654 677889999999999998776 444444 55 6
Q ss_pred hhhH
Q 047888 165 FDHE 168 (274)
Q Consensus 165 ~DH~ 168 (274)
+|=.
T Consensus 97 iD~a 100 (383)
T cd08186 97 IDSA 100 (383)
T ss_pred HHHH
Confidence 6653
No 41
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=47.65 E-value=2.4e+02 Score=26.35 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=64.9
Q ss_pred cEEEEEeCCCCCCC---c----hHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHH
Q 047888 41 TYALVVLNQRLPRF---A----PLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMD 113 (274)
Q Consensus 41 ~~avIvlng~~~~~---~----~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~ 113 (274)
+.+++..||+-|-. . ....+..--++++=.|.+=|++ ..+ --++.+..+
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~~g~~v~G~~~G~~GL~~---------------~~~---------~~l~~~~v~ 56 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIYHGFEVYGIRRGYKGLIN---------------GEI---------KPLESKNVS 56 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcC---------------CCe---------EeCCHHHHh
Confidence 35788889998742 1 1222233358899999999987 322 224444444
Q ss_pred HHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhc
Q 047888 114 FYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRF 178 (274)
Q Consensus 114 ~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~ 178 (274)
.+...|=.++.- .+.++.-+.+++++-+.+++-+ .++++|+-| ++...+.|.++
T Consensus 57 ~~~~~gGt~LgtsR~~~~~~~~~~~~~~~~l~~~~Id------~Li~IGGdg-----s~~~a~~L~e~ 113 (301)
T TIGR02482 57 GIIHRGGTILGTARCPEFKTEEGRQKAVENLKKLGIE------GLVVIGGDG-----SYTGAQKLYEE 113 (301)
T ss_pred hHHhCCCceeccCCCCccCCHHHHHHHHHHHHHcCCC------EEEEeCCch-----HHHHHHHHHHh
Confidence 444443223322 2334566789999999998877 789998865 56666666664
No 42
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=47.48 E-value=1e+02 Score=29.08 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=36.8
Q ss_pred CccccEEeeCCCCCC----HHHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCC
Q 047888 94 RYKPDLIKGDMDSIR----KEVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPN 147 (274)
Q Consensus 94 ~i~Pd~iiGDfDSi~----~~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~ 147 (274)
+..--++|.|=.+.+ +++.+.++..|+++..+. ++.+..+.+.+++.+++.+.+
T Consensus 22 ~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d 82 (370)
T cd08551 22 GGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCD 82 (370)
T ss_pred CCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 433345566644433 356777777777666543 578888999999999888776
No 43
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=47.24 E-value=96 Score=29.32 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=43.6
Q ss_pred cccEEeeCCCCCC-----HHHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chh
Q 047888 96 KPDLIKGDMDSIR-----KEVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFD 166 (274)
Q Consensus 96 ~Pd~iiGDfDSi~-----~~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~D 166 (274)
..-++|.|=.+.. +++.+.++..|+++..| .++....+.+.+++.+++.+++ -|+.+| || -+|
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D------~IIavG--GGSviD 97 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNAD------FVIGIG--GGSPLD 97 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCC------EEEEeC--CchHHH
Confidence 3445566543322 45677788777776654 4678888899999999998887 454444 45 677
Q ss_pred hH
Q 047888 167 HE 168 (274)
Q Consensus 167 H~ 168 (274)
-.
T Consensus 98 ~a 99 (357)
T cd08181 98 AA 99 (357)
T ss_pred HH
Confidence 63
No 44
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=47.16 E-value=1.2e+02 Score=28.93 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=63.7
Q ss_pred CCcEEEEEeCCCCCC--------CchHHhc-cCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCC-C
Q 047888 39 SLTYALVVLNQRLPR--------FAPLLWQ-HAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSI-R 108 (274)
Q Consensus 39 ~~~~avIvlng~~~~--------~~~~l~~-~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi-~ 108 (274)
.+.+..+..|.-..+ ++..+.+ ..|-+|++|=|+-.+.+ +.+-.-.+.++=.=++ +
T Consensus 61 ~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~--------------e~~p~l~ih~S~q~~v~N 126 (347)
T COG0826 61 AGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPGLIMLAR--------------ERGPDLPIHVSTQANVTN 126 (347)
T ss_pred cCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHH--------------HhCCCCcEEEeeeEecCC
Confidence 446677777776532 1123333 46999999999999887 1221112223333333 4
Q ss_pred HHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecC----CCCh
Q 047888 109 KEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGAL----GGRF 165 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~----GGR~ 165 (274)
.+..++++++|.+.+..+.+=-.-++....+.+ ++ ...++.+.|++ .||-
T Consensus 127 ~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~----~~---veiEvfVhGalcia~SgRC 180 (347)
T COG0826 127 AETAKFWKELGAKRVVLPRELSLEEIKEIKEQT----PD---VEIEVFVHGALCIAYSGRC 180 (347)
T ss_pred HHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC----CC---ceEEEEEecchhhccCchh
Confidence 567899999999888887665555543333322 10 22489999987 5775
No 45
>PRK01215 competence damage-inducible protein A; Provisional
Probab=46.84 E-value=78 Score=28.98 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcC-CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDES-HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~-~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.|+-..-..+.+++.|+++.... .-.|.-+...+|+.+.+.. + -|++.|++| |.-|.+..-+.-+
T Consensus 21 ~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~-D------lVIttGG~g~t~dD~t~eaia~~ 87 (264)
T PRK01215 21 VNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRA-D------VVVSTGGLGPTYDDKTNEGFAKA 87 (264)
T ss_pred EEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCC-C------EEEEeCCCcCChhhhHHHHHHHH
Confidence 37766667788889998876543 2345556788888887643 4 788999998 6999998877655
No 46
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=46.77 E-value=96 Score=29.92 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 109 KEVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
+++.+.+++.|+++..+ .++-...+.+.+++.+++.+++ -|+-+| || -+|-.
T Consensus 67 ~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D------~IiavG--GGS~iD~A 122 (395)
T PRK15454 67 AGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCD------GVIAFG--GGSVLDAA 122 (395)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcC------EEEEeC--ChHHHHHH
Confidence 34677788888877655 4556667788999999998887 555444 55 77764
No 47
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=46.53 E-value=98 Score=29.44 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 109 KEVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
+++.+.+++.++++..+. ++....+.+++++.+++.+.+ -|+-+| || -+|=.
T Consensus 44 ~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D------~IIaiG--GGs~iD~a 99 (376)
T cd08193 44 DPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGAD------GVIGFG--GGSSMDVA 99 (376)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCC------EEEEeC--CchHHHHH
Confidence 356677777777766554 788889999999999988776 455444 55 66653
No 48
>PRK03202 6-phosphofructokinase; Provisional
Probab=45.00 E-value=2.1e+02 Score=26.94 Aligned_cols=103 Identities=9% Similarity=0.052 Sum_probs=65.8
Q ss_pred cEEEEEeCCCCCCC---c----hHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHH
Q 047888 41 TYALVVLNQRLPRF---A----PLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMD 113 (274)
Q Consensus 41 ~~avIvlng~~~~~---~----~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~ 113 (274)
+.+++..||+-|-. . ....++..-++++=.|..-|++ ..+.+ ++.+..+
T Consensus 3 ~i~Il~sGG~apG~Na~i~~~~~~~~~~g~~v~g~~~G~~GL~~---------------~~~~~---------l~~~~v~ 58 (320)
T PRK03202 3 RIGVLTSGGDAPGMNAAIRAVVRTAISEGLEVYGIYDGYAGLLE---------------GDIVK---------LDLKSVS 58 (320)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHHHCCCeEEEEecChhhhcC---------------CCEEE---------CCHHHHh
Confidence 45677778988742 1 1223333468999889999987 32222 3455455
Q ss_pred HHHhcCCeEEE---cCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhc
Q 047888 114 FYASLGTKVVD---ESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRF 178 (274)
Q Consensus 114 ~~~~~g~~ii~---~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~ 178 (274)
.+...|=.++. +.+.++..+.+++++-+.+++-+ .++++|+ |-++.....|.++
T Consensus 59 ~~~~~gGs~LgtsR~~~~~~~~~~~~~~~~l~~~~Id------~Li~IGG-----d~s~~~a~~L~e~ 115 (320)
T PRK03202 59 DIINRGGTILGSARFPEFKDEEGRAKAIENLKKLGID------ALVVIGG-----DGSYMGAKRLTEH 115 (320)
T ss_pred hHHhCCCcccccCCCCCcCCHHHHHHHHHHHHHcCCC------EEEEeCC-----hHHHHHHHHHHhc
Confidence 55444322222 23445667899999999998877 7888888 5677777777664
No 49
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=44.09 E-value=60 Score=30.59 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=50.5
Q ss_pred EEeeC-------CCCCCHHHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHH
Q 047888 99 LIKGD-------MDSIRKEVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEA 169 (274)
Q Consensus 99 ~iiGD-------fDSi~~~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~l 169 (274)
+++|| .||-.+-+.+.+++.|.++..+.-- .|.-.+..+++.+.....+ -|+..|++| |.-|++-
T Consensus 161 ltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~D------lIITTGGtg~g~~D~tp 234 (312)
T PRK03604 161 LVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYA------LIITTGGTGLGPRDVTP 234 (312)
T ss_pred EEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCC------EEEECCCCCCCCCccHH
Confidence 44888 5887778888999999877654332 3344467777766444445 788889998 6999988
Q ss_pred HHHHHH
Q 047888 170 GNINVL 175 (274)
Q Consensus 170 ani~~L 175 (274)
.-+.-+
T Consensus 235 eAl~~l 240 (312)
T PRK03604 235 EALAPL 240 (312)
T ss_pred HHHHHh
Confidence 887654
No 50
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=43.55 E-value=2.1e+02 Score=27.38 Aligned_cols=84 Identities=12% Similarity=0.181 Sum_probs=65.3
Q ss_pred ccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCC--ChhHHHHHHHHHHHhCCCCcCCCcEEEEE--ecCC----CChh
Q 047888 95 YKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQ--DTTDLHKCVAYIRDCTPNLEKSNLRILVA--GALG----GRFD 166 (274)
Q Consensus 95 i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dK--D~TD~ekAl~~~~~~~~~~~~~~~~I~i~--Ga~G----GR~D 166 (274)
+.+-+-||=++.-.-+.+++..+.|.+|+- ..-+ +-.|...|++++.+.|.. +|+++ |... +|.+
T Consensus 201 ~vd~lkI~s~~~~n~~LL~~~a~~gkPVil-k~G~~~t~~e~~~Ave~i~~~Gn~------~i~L~erg~s~yp~~~~~~ 273 (360)
T PRK12595 201 YVDVIQIGARNMQNFELLKAAGRVNKPVLL-KRGLSATIEEFIYAAEYIMSQGNG------QIILCERGIRTYEKATRNT 273 (360)
T ss_pred hCCeEEECcccccCHHHHHHHHccCCcEEE-eCCCCCCHHHHHHHHHHHHHCCCC------CEEEECCccCCCCCCCCCC
Confidence 456666999999999999999999988874 4554 888999999999998876 68888 6664 6877
Q ss_pred hHHHHHHHHHhcCCCeEEE
Q 047888 167 HEAGNINVLYRFSDIRIIL 185 (274)
Q Consensus 167 H~lani~~L~~~~~~~i~l 185 (274)
=-|..|..|.+..+.++.+
T Consensus 274 ldl~~i~~lk~~~~~PV~~ 292 (360)
T PRK12595 274 LDISAVPILKQETHLPVMV 292 (360)
T ss_pred cCHHHHHHHHHHhCCCEEE
Confidence 7777777777644555544
No 51
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=43.39 E-value=1.1e+02 Score=29.23 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 109 KEVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
+.+.+.+++.|+++..| .++....+.+.+++.+++.+++ -| +|.-|| -+|=.
T Consensus 48 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D------~I--IaiGGGS~iD~a 103 (382)
T PRK10624 48 AKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGAD------YL--IAIGGGSPQDTC 103 (382)
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCC------EE--EEeCChHHHHHH
Confidence 34566777777766555 3566778888999999998876 44 444455 67754
No 52
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=42.84 E-value=86 Score=25.95 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=32.5
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHH
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRD 143 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~ 143 (274)
..+.||+|++.- +..++..+.+++.|++++.++...+..|....++.+-+
T Consensus 57 ~~l~PDlii~~~-~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~ 106 (195)
T cd01143 57 VALKPDLVIVSS-SSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGK 106 (195)
T ss_pred hccCCCEEEEcC-CcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999853 23445778889999887766555444455555554433
No 53
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=42.43 E-value=64 Score=30.38 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.|+-.+-+.+++++.|.++..+..- .|...+..|+..+.+.+.+ -|++.|++| |+-|++-.-+.-+
T Consensus 177 ~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~D------lIItTGGtsvg~~D~tp~Ai~~~ 244 (312)
T cd03522 177 EDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAE------LLILTGGASVDPDDVTPAAIRAA 244 (312)
T ss_pred EEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCC------EEEEeCCcccCCcchHHHHHHhc
Confidence 4888888889999999877654333 3446678888887766565 788888887 6999998877654
No 54
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=42.38 E-value=1.4e+02 Score=28.54 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 109 KEVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
+++.+.+++.|+++..| .++....+.+++++.+++.+.+ -|+.+ -|| -+|=.
T Consensus 47 ~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D------~Iiai--GGGSviD~a 102 (379)
T TIGR02638 47 DKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGAD------YLIAI--GGGSPIDTA 102 (379)
T ss_pred HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCC------EEEEe--CChHHHHHH
Confidence 35667777777776665 4667788888999999998877 44434 344 66754
No 55
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=40.68 E-value=59 Score=33.32 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCCCCh-hHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHDQDT-TDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~dKD~-TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-+.+.+++.|.+++.+..-+|+ .++..+++.+.+ ..+ -|++.|++| |+-|++-.-+.-+
T Consensus 211 ~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~-~~D------~iIttGG~s~g~~D~~~~~l~~~ 277 (633)
T PRK14498 211 YDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALK-ECD------LVLLSGGTSAGAGDVTYRVIEEL 277 (633)
T ss_pred EEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-cCC------EEEECCCCcCCCcccHHHHHHhc
Confidence 3787777888899999888766555555 457888888765 455 788889988 6999988766544
No 56
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=40.04 E-value=1.5e+02 Score=28.37 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=43.9
Q ss_pred CCccccEEeeCCCCC-----CHHHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-
Q 047888 93 RRYKPDLIKGDMDSI-----RKEVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG- 163 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi-----~~~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG- 163 (274)
.|.+--++++| .|+ -+++.+.+++.|+.+..|. |+-...+.+++++.+++.+++ -|+-+| ||
T Consensus 29 ~g~~~~livt~-~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D------~IiaiG--GGS 99 (383)
T PRK09860 29 YGFTRTLIVTD-NMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCD------SVISLG--GGS 99 (383)
T ss_pred cCCCEEEEEcC-cchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCC------EEEEeC--Cch
Confidence 34444455655 333 2256777888887765553 466788899999999998887 444444 55
Q ss_pred ChhhH
Q 047888 164 RFDHE 168 (274)
Q Consensus 164 R~DH~ 168 (274)
-+|=.
T Consensus 100 ~iD~A 104 (383)
T PRK09860 100 PHDCA 104 (383)
T ss_pred HHHHH
Confidence 77764
No 57
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=38.39 E-value=2.5e+02 Score=23.95 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=55.5
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCCh-----------hHHHHHHHHHHHhCCCCcCCCcEEEEEecC
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDT-----------TDLHKCVAYIRDCTPNLEKSNLRILVAGAL 161 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~-----------TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~ 161 (274)
.-+.|++.+-|+-.|+.+.- .+++.|++.+.+ |+|- .+....++.+++.+... .|+|+-..
T Consensus 15 ~l~~P~l~V~si~~I~~~~~-~Lk~~Gik~li~--DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~-----~v~IvSNs 86 (168)
T PF09419_consen 15 SLLLPHLYVPSIRDIDFEAN-HLKKKGIKALIF--DKDNTLTPPYEDEIPPEYAEWLNELKKQFGKD-----RVLIVSNS 86 (168)
T ss_pred cccCCCEEcCChhhCCcchh-hhhhcCceEEEE--cCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCC-----eEEEEECC
Confidence 56889999999999987651 256678887765 4444 36677788888776532 68888876
Q ss_pred CC-ChhhHHHHHHHHHhcCCCeE
Q 047888 162 GG-RFDHEAGNINVLYRFSDIRI 183 (274)
Q Consensus 162 GG-R~DH~lani~~L~~~~~~~i 183 (274)
-| +-|..-.....+.+.-++++
T Consensus 87 aGs~~d~~~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 87 AGSSDDPDGERAEALEKALGIPV 109 (168)
T ss_pred CCcccCccHHHHHHHHHhhCCcE
Confidence 44 55655555555555444443
No 58
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=36.77 E-value=44 Score=26.11 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=32.4
Q ss_pred CCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCC
Q 047888 107 IRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNL 148 (274)
Q Consensus 107 i~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~ 148 (274)
++.++.+.++++|+.+ .+++..-++.|++.|.++|...
T Consensus 17 fSkHA~~RL~~R~I~l----~~~~~~~i~~av~~A~~KG~ke 54 (96)
T TIGR02530 17 LSKHALERMRERNISI----NPDDWKKLLEAVEEAESKGVKD 54 (96)
T ss_pred EcHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHhcCCCc
Confidence 5778888999998754 6889999999999999999873
No 59
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=36.49 E-value=1.7e+02 Score=27.75 Aligned_cols=103 Identities=9% Similarity=0.039 Sum_probs=62.3
Q ss_pred cEEEEEeCCCCCCC---c----hHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHH
Q 047888 41 TYALVVLNQRLPRF---A----PLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMD 113 (274)
Q Consensus 41 ~~avIvlng~~~~~---~----~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~ 113 (274)
+.+++..||+-|-. + ....+...-++++-+|..=|++ ..+.+ ++++..+
T Consensus 2 ri~Il~sGG~apG~N~~i~~~v~~~~~~g~~v~G~~~G~~GL~~---------------~~~~~---------l~~~~v~ 57 (338)
T cd00363 2 KIGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYAGLVE---------------GDIKE---------LDWESVS 57 (338)
T ss_pred eEEEEccCCCchhHHHHHHHHHHHHHHCCCEEEEEecChHHhCC---------------CCeEe---------CCHHHhc
Confidence 45677779988842 1 2233344579999999999987 22221 3334333
Q ss_pred HHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhc
Q 047888 114 FYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRF 178 (274)
Q Consensus 114 ~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~ 178 (274)
.+...|=.++.- ++-++..+.+++++-+.+++-+ .++++|+- -++.....|.++
T Consensus 58 ~~~~~gGs~LgtsR~~~~~~~~~~~~~~~~l~~~~I~------~Lv~IGGd-----~s~~~a~~L~e~ 114 (338)
T cd00363 58 DIINRGGTIIGSARCKEFRTEEGRAKAAENLKKHGID------ALVVIGGD-----GSYTGADLLTEE 114 (338)
T ss_pred chhhCCCeecccCCCCccCCHHHHHHHHHHHHHhCCC------EEEEeCCH-----HHHHHHHHHHHH
Confidence 444332223322 2324566788999999888877 78888874 456666666554
No 60
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=35.94 E-value=2.2e+02 Score=27.64 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 109 KEVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
+++.+.++..|+++..|. ++-.....+++++.+++.+.+ -|+ |.-|| -+|=
T Consensus 41 ~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D------~II--aiGGGSviD~ 95 (414)
T cd08190 41 KVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFD------AFV--AVGGGSVIDT 95 (414)
T ss_pred HHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCC------EEE--EeCCccHHHH
Confidence 345666777777776553 566777888999999998877 444 44455 6665
No 61
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=35.78 E-value=79 Score=27.76 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=29.5
Q ss_pred HHHHHHhCCCCcCCCcEEEEEe-cCCCChhhHHHHHHHHHhcCCCe----EEEEeCCeEEEEecCCceeEEEEccCCCCC
Q 047888 138 VAYIRDCTPNLEKSNLRILVAG-ALGGRFDHEAGNINVLYRFSDIR----IILLSDDCHIQLLPKTHRHDIYIQSSVEGP 212 (274)
Q Consensus 138 l~~~~~~~~~~~~~~~~I~i~G-a~GGR~DH~lani~~L~~~~~~~----i~li~~~~~i~ll~~g~~~~i~~~~~~~g~ 212 (274)
-++|.+.++ ..++.| .+|-|.-||+.||....+..+.. ++-+|..+++-+...=+++.+. ...+.
T Consensus 101 ~~ia~~~ga-------~~IvTGEsLGQvaSQTl~nL~~i~~~~~~pIlRPLig~dK~EIi~~Ar~Igtye~S---~~~~~ 170 (197)
T PF02568_consen 101 EEIAEEEGA-------DAIVTGESLGQVASQTLENLRVIESASDLPILRPLIGFDKEEIIEIARKIGTYEIS---IRPYD 170 (197)
T ss_dssp HHHHHHTT---------EEE----SSSTTS--HHHHHHHGGG--S-EE-TTTT--HHHHHHHHHHTT-HHHH---TS---
T ss_pred HHHHHHCCC-------CEEEeCchhHHHHhhhHHHHhhhhcccCCceeCCcCCCCHHHHHHHHHHhCchhhh---cCCCC
Confidence 345556666 488999 78889999999999987765421 1122333333222222354432 12348
Q ss_pred EEEEEeecCCcccEEEccc
Q 047888 213 HCGLIPIGMPSGSTSTTGL 231 (274)
Q Consensus 213 ~~SliPl~~~~~~vt~~Gl 231 (274)
.|+++| ..|++.-+.+-+
T Consensus 171 ~C~~~~-k~p~t~~~~~~~ 188 (197)
T PF02568_consen 171 CCSLFP-KHPVTKAKLEEV 188 (197)
T ss_dssp ---------------HHHH
T ss_pred cceeeC-CCCCcCCCHHHH
Confidence 899999 667665554433
No 62
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=34.95 E-value=82 Score=33.27 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=44.7
Q ss_pred CccccEEeeCCCCCCHH-HHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHH
Q 047888 94 RYKPDLIKGDMDSIRKE-VMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNI 172 (274)
Q Consensus 94 ~i~Pd~iiGDfDSi~~~-~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani 172 (274)
.=.|-+|+|||-|...+ .++.++..| +..++++... ..++ -=|+|-+--|-+||.|+|-
T Consensus 673 ~d~~~viLGD~N~y~~edpI~~l~~aG-------------y~~l~~~~~~--~~~~-----YSY~f~G~~gtLDhaLas~ 732 (798)
T COG2374 673 ADADIVILGDFNDYAFEDPIQALEGAG-------------YMNLAARFHD--AGDR-----YSYVFNGQSGTLDHALASA 732 (798)
T ss_pred cCCCEEEEeccchhhhccHHHHHhhcC-------------chhhhhhccC--CCCc-----eEEEECCccchHhhhhhhh
Confidence 34578889999987665 455555544 1223333321 1111 5688999999999999998
Q ss_pred HHHHhcCCCeEE
Q 047888 173 NVLYRFSDIRII 184 (274)
Q Consensus 173 ~~L~~~~~~~i~ 184 (274)
++..+-.....|
T Consensus 733 sl~~~v~~a~ew 744 (798)
T COG2374 733 SLAAQVSGATEW 744 (798)
T ss_pred hhhhhccCceee
Confidence 876655443333
No 63
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=34.81 E-value=3.1e+02 Score=26.89 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=55.4
Q ss_pred eCCCCCCHHHHHHHHhcCCeEEEcC-------------CCCChhHHHHHHHHHHHhCCCCcCCCcEE-EEEecCCCChhh
Q 047888 102 GDMDSIRKEVMDFYASLGTKVVDES-------------HDQDTTDLHKCVAYIRDCTPNLEKSNLRI-LVAGALGGRFDH 167 (274)
Q Consensus 102 GDfDSi~~~~~~~~~~~g~~ii~~~-------------~dKD~TD~ekAl~~~~~~~~~~~~~~~~I-~i~Ga~GGR~DH 167 (274)
.+-++++++.++.+++.|+..+.+. ...+.-+...|++.+++.+.. ...+ +++|-.|--.|+
T Consensus 145 ~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~----~v~~dli~GlPgqt~e~ 220 (453)
T PRK13347 145 IDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFE----SINFDLIYGLPHQTVES 220 (453)
T ss_pred eccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCC----cEEEeEEEeCCCCCHHH
Confidence 5778888888888888887665432 224555777888888887754 1123 578888889999
Q ss_pred HHHHHHHHHhcCCCeE
Q 047888 168 EAGNINVLYRFSDIRI 183 (274)
Q Consensus 168 ~lani~~L~~~~~~~i 183 (274)
....+..+.++....+
T Consensus 221 ~~~tl~~~~~l~p~~i 236 (453)
T PRK13347 221 FRETLDKVIALSPDRI 236 (453)
T ss_pred HHHHHHHHHhcCCCEE
Confidence 9999988877654333
No 64
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=34.49 E-value=3.2e+02 Score=29.12 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=65.6
Q ss_pred CCCcEEEEEeCCCCCCC---ch----HHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHH
Q 047888 38 PSLTYALVVLNQRLPRF---AP----LLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKE 110 (274)
Q Consensus 38 ~~~~~avIvlng~~~~~---~~----~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~ 110 (274)
...+.+++-.|||-|-. .+ ....+..-++++=.|..=|++ ..+.+ ++.+
T Consensus 388 ~~~~IaIltsGG~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~---------------~~~~~---------l~~~ 443 (762)
T cd00764 388 TNLNIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAK---------------GQIVE---------LGWI 443 (762)
T ss_pred cccEEEEEecCCCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcC---------------CCccc---------CCHH
Confidence 33566788889998742 11 122334568999999998887 33333 3444
Q ss_pred HHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHh
Q 047888 111 VMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYR 177 (274)
Q Consensus 111 ~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~ 177 (274)
..+-+...|=.++--...+...|.+++.+.+.+++-+ -++++|+.| ++.....|.+
T Consensus 444 ~v~~~~~~GGt~LGT~R~~~~~~~~~i~~~l~~~~Id------~LivIGGdg-----s~~~a~~L~~ 499 (762)
T cd00764 444 DVGGWTGRGGSELGTKRTLPKKDLETIAYNFQKYGID------GLIIVGGFE-----AYKGLLQLRE 499 (762)
T ss_pred HHHHHHhCCcccccccCCCcHHHHHHHHHHHHHcCCC------EEEEECChh-----HHHHHHHHHH
Confidence 4443444432233333333356999999999999888 899999866 4555555554
No 65
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=34.03 E-value=89 Score=29.37 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=33.4
Q ss_pred HHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 111 VMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 111 ~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
+.+.++..++.+..+.-+++..+.+++++.+++.+++ -|+.+| || -+|=
T Consensus 42 l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D------~iIavG--GGs~~D~ 91 (347)
T cd08172 42 LPESLAAGEAFVLRYDGECSEENIERLAAQAKENGAD------VIIGIG--GGKVLDT 91 (347)
T ss_pred HHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCC------EEEEeC--CcHHHHH
Confidence 3344444566666777778999999999999988876 554444 55 4553
No 66
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=33.64 E-value=1.2e+02 Score=27.06 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=32.6
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHH
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYI 141 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~ 141 (274)
..+.||+|++.-..-.++..+.+++.|++++.+.+ +..-|....++.+
T Consensus 69 l~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~-~~~~~~~~~i~~l 116 (260)
T PRK03379 69 VALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDA-TSIEQIANALRQL 116 (260)
T ss_pred HhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHHH
Confidence 46889999986543446677889999999887643 3444555555444
No 67
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=32.99 E-value=2e+02 Score=27.33 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 110 EVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
++.+.++..|+++..+. ++......+.+++.+++.+++ -|+-+| || -+|=
T Consensus 47 ~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D------~IIavG--GGS~iD~ 100 (377)
T cd08176 47 KVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCD------FIISIG--GGSPHDC 100 (377)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCC------EEEEeC--CcHHHHH
Confidence 46677777777776654 367778889999999888776 444444 55 5664
No 68
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=32.77 E-value=31 Score=29.96 Aligned_cols=77 Identities=23% Similarity=0.387 Sum_probs=42.1
Q ss_pred EEEEEecCCCChh-hHHHHHHHHHhcCC-CeEEEEeC---------CeEEEEecCCceeEEEEccCCCCCEEEEE--eec
Q 047888 154 RILVAGALGGRFD-HEAGNINVLYRFSD-IRIILLSD---------DCHIQLLPKTHRHDIYIQSSVEGPHCGLI--PIG 220 (274)
Q Consensus 154 ~I~i~Ga~GGR~D-H~lani~~L~~~~~-~~i~li~~---------~~~i~ll~~g~~~~i~~~~~~~g~~~Sli--Pl~ 220 (274)
.+.++|+-|.|.| |.=..=-.+|.+.+ ..+.+.++ ...+|++|+|..|... . ....++|+ |-.
T Consensus 36 ~VmvvgGpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~---r-~~~tv~LviE~~r 111 (177)
T PRK13264 36 IVMVVGGPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQ---R-EAGSIGLVIERKR 111 (177)
T ss_pred EEEEEccCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCc---c-CCCeEEEEEEeCC
Confidence 6888999999999 85121222333343 23444443 2234677777666542 1 23344433 332
Q ss_pred CCcccEEEccceeecCC
Q 047888 221 MPSGSTSTTGLQWDLDN 237 (274)
Q Consensus 221 ~~~~~vt~~Glky~L~~ 237 (274)
..=.+.||+|=-.+
T Consensus 112 ---~~~~~d~~~wyc~~ 125 (177)
T PRK13264 112 ---PEGELDGFQWYCDE 125 (177)
T ss_pred ---CCCCccceEEECCC
Confidence 23457888887764
No 69
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=32.68 E-value=94 Score=30.32 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCCCCh-hHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHDQDT-TDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~dKD~-TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-++-+..++++.|.++..+..-+|+ -.+..+++.+. ..++ -|++.|+++ |..|++-.-+.-+
T Consensus 202 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~-~~~D------lvIttGG~S~G~~D~~~~al~~l 268 (411)
T PRK10680 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEAD-SQAD------VVISSGGVSVGEADYTKTILEEL 268 (411)
T ss_pred EEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhc-cCCC------EEEEcCCCCCCCcchHHHHHHhc
Confidence 3776667778889999877655444444 44667776653 3334 677788877 7999988776654
No 70
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=32.60 E-value=1.7e+02 Score=23.36 Aligned_cols=86 Identities=14% Similarity=0.131 Sum_probs=51.2
Q ss_pred cccEEeeCCCC--CCHHHHHHHHhcCCeEEEcC-----CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhH
Q 047888 96 KPDLIKGDMDS--IRKEVMDFYASLGTKVVDES-----HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHE 168 (274)
Q Consensus 96 ~Pd~iiGDfDS--i~~~~~~~~~~~g~~ii~~~-----~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~ 168 (274)
.--.+.++.+. ......+.++..|.+++..+ ..|..+|..+|++.+...... ..+.|+++.+=+ | +
T Consensus 40 ~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~---~~d~ivLvSgD~---D-f 112 (149)
T cd06167 40 VLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKR---RIDTIVLVSGDS---D-F 112 (149)
T ss_pred EEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhc---CCCEEEEEECCc---c-H
Confidence 33456777764 45556778888999888776 578999999998876432221 123666666543 2 2
Q ss_pred HHHHHHHHhcCCCeEEEEeCC
Q 047888 169 AGNINVLYRFSDIRIILLSDD 189 (274)
Q Consensus 169 lani~~L~~~~~~~i~li~~~ 189 (274)
..-+..| +-.+.+++++.-.
T Consensus 113 ~~~i~~l-r~~G~~V~v~~~~ 132 (149)
T cd06167 113 VPLVERL-RELGKRVIVVGFE 132 (149)
T ss_pred HHHHHHH-HHcCCEEEEEccC
Confidence 2222322 2335566655543
No 71
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=32.52 E-value=1.1e+02 Score=28.76 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 109 KEVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
+.+.+.+++.++++..+. ++-+..+.+.+++.+++.+++ -|+.+| || -+|=
T Consensus 39 ~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D------~IIaiG--GGS~~D~ 93 (366)
T PF00465_consen 39 DRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGAD------CIIAIG--GGSVMDA 93 (366)
T ss_dssp HHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSS------EEEEEE--SHHHHHH
T ss_pred HHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCC------EEEEcC--CCCcCcH
Confidence 355667777787775554 899999999999999999887 566555 44 4443
No 72
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=32.40 E-value=1.2e+02 Score=28.67 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHH
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVA 139 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~ 139 (274)
..+.||+|++...+ ..+..+.+++.|++++.+++.++.-|....++
T Consensus 116 l~l~PDLVi~~~~~-~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~ 161 (359)
T PRK09534 116 VGLDPDLVLAPNAV-AGDTVTRLREAGITVFHFPAATSIEDVAEKTA 161 (359)
T ss_pred hcCCCCEEEEcCCC-chHHHHHHHHCCCeEEEeCCCCCHHHHHHHHH
Confidence 46889999986543 44568889999999977654444444444343
No 73
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=31.73 E-value=1e+02 Score=27.05 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=27.6
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC
Q 047888 125 ESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG 163 (274)
Q Consensus 125 ~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG 163 (274)
-.|+|-..|++..+++..++.... +++++|-.=|
T Consensus 45 rtP~~~a~Dl~~~i~~y~~~w~~~-----~vvLiGYSFG 78 (192)
T PF06057_consen 45 RTPEQTAADLARIIRHYRARWGRK-----RVVLIGYSFG 78 (192)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCc-----eEEEEeecCC
Confidence 368889999999999998875543 8999996655
No 74
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=31.72 E-value=1.7e+02 Score=28.72 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcC-CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDES-HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINV 174 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~-~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~ 174 (274)
.||-.+-..+.+++.|.++..+. -..|..++..+++.+.+. .+ -|++.|++| |+-|++-.-+.-
T Consensus 18 ~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~-~D------lVIttGGlgpt~dD~t~eava~ 83 (413)
T TIGR00200 18 VNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASER-AD------VLIFNGGLGPTSDDLTAETIAT 83 (413)
T ss_pred EEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcC-CC------EEEEcCCCCCCCcccHHHHHHH
Confidence 47766677788899998776443 245566677888877643 34 788889988 699998888743
No 75
>PF12367 PFO_beta_C: Pyruvate ferredoxin oxidoreductase beta subunit C terminal
Probab=31.63 E-value=72 Score=23.15 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=24.6
Q ss_pred HHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHH
Q 047888 111 VMDFYASLGTKVVDESHDQDTTDLHKCVAYIRD 143 (274)
Q Consensus 111 ~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~ 143 (274)
..+||+++ +..++.+-|-+|.++|++.|.+
T Consensus 9 T~~wY~~r---vy~l~e~~Dp~d~~~A~~~a~e 38 (67)
T PF12367_consen 9 TYDWYKER---VYKLDEDHDPSDREAAMEKARE 38 (67)
T ss_pred hHHHHHHh---eEECCCCCCchhHHHHHHHHHh
Confidence 46788875 4445789999999999999998
No 76
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=31.61 E-value=1.1e+02 Score=30.03 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHhcCCeEEEcCCCCChhH-HHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 105 DSIRKEVMDFYASLGTKVVDESHDQDTTD-LHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 105 DSi~~~~~~~~~~~g~~ii~~~~dKD~TD-~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
||-.+-+...+++.|.+++.+..-+|+.+ +.++++.+.+ ..+ -|++.|+++ |..|++-.-+.-+
T Consensus 219 dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~-~~D------lIItTGG~S~G~~D~v~~~l~~~ 284 (419)
T PRK14690 219 DANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAA-EAD------VILTSGGASAGDEDHVSALLREA 284 (419)
T ss_pred eCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCc-cCC------EEEEcCCccCCCcchHHHHHHhc
Confidence 67677777888999988876655555544 5667766643 233 677777776 7999988777654
No 77
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=31.09 E-value=1.3e+02 Score=28.57 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCeE--EEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 109 KEVMDFYASLGTKV--VDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 109 ~~~~~~~~~~g~~i--i~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
+.+.+.++..|+++ ..++++......+++++.+++.+.+ -|+.+| || -+|=
T Consensus 46 ~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d------~IIavG--GGsv~D~ 99 (366)
T PRK09423 46 DRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCD------VVIGIG--GGKTLDT 99 (366)
T ss_pred HHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCC------EEEEec--ChHHHHH
Confidence 34555666655543 2466788888899999999888776 555555 45 5554
No 78
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=30.56 E-value=1.5e+02 Score=25.80 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=33.2
Q ss_pred CHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEec
Q 047888 108 RKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGA 160 (274)
Q Consensus 108 ~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga 160 (274)
+++..+++++.|++++... + ...|+..+++.+.+++.. +|++-|+
T Consensus 101 ~~~~~~~l~~~gv~vi~~~-~-~~~dl~~~l~~L~~~g~~------~vlveGG 145 (210)
T TIGR01508 101 PEEKVEELEDKGVEVVKFG-E-GRVDLKKLLDILYDKGVR------RLMVEGG 145 (210)
T ss_pred CHHHHHHHHHCCCEEEEeC-C-CCcCHHHHHHHHHHCCCC------EEEEeeC
Confidence 3455667788888887542 2 347899999999888877 7888775
No 79
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=30.27 E-value=2.3e+02 Score=26.79 Aligned_cols=51 Identities=29% Similarity=0.445 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 109 KEVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
..+.+.++..++++..+ .++.+....+.+++.+++.+++ -|+ |.-|| -+|=
T Consensus 38 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D------~II--avGGGs~~D~ 92 (367)
T cd08182 38 SGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPD------AVL--AVGGGSVLDT 92 (367)
T ss_pred HHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcC------EEE--EeCCcHHHHH
Confidence 34556666667665543 4667788889999999988776 444 44455 5665
No 80
>PLN02564 6-phosphofructokinase
Probab=29.97 E-value=2.8e+02 Score=27.88 Aligned_cols=90 Identities=23% Similarity=0.255 Sum_probs=53.3
Q ss_pred cEEEEEeCCCCCCC---c----hHHhccC--CEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHH
Q 047888 41 TYALVVLNQRLPRF---A----PLLWQHA--KLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEV 111 (274)
Q Consensus 41 ~~avIvlng~~~~~---~----~~l~~~~--~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~ 111 (274)
+.|++..||+-|-. . ..++... .-++++-.|..=|++ ..+.+ ++++.
T Consensus 89 riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~---------------~~~i~---------Lt~~~ 144 (484)
T PLN02564 89 RACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYS---------------RNTIP---------LTPKV 144 (484)
T ss_pred EEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCC---------------CCeEe---------CCHHH
Confidence 44667778887742 1 2233332 368999999998886 22211 34443
Q ss_pred HHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 112 MDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 112 ~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
...+...|=.++.-.. ..-|.+++++-+.+++-+ .++++|+-|
T Consensus 145 V~~i~~~GGTiLGTsR--~~~~~~~iv~~L~~~~Id------~LivIGGDG 187 (484)
T PLN02564 145 VNDIHKRGGTILGTSR--GGHDTSKIVDSIQDRGIN------QVYIIGGDG 187 (484)
T ss_pred hhcHhhCCCceeccCC--CcchHHHHHHHHHHhCCC------EEEEECCch
Confidence 3334444434443222 223788999888888877 788888755
No 81
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=29.92 E-value=1.8e+02 Score=25.03 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=26.8
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHH
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVA 139 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~ 139 (274)
..+.||+|++.-...+.+..+.+++.|++++.++......|....++
T Consensus 55 ~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~ 101 (235)
T cd01149 55 LSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIR 101 (235)
T ss_pred hccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHH
Confidence 35668888875433344566777777777765543333334433333
No 82
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=29.71 E-value=2.8e+02 Score=26.27 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 110 EVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
++.+.++..|+++..+ .++....+.+++++.+++.+.+ -|+.+| || -+|=.
T Consensus 45 ~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d------~IIaiG--GGS~~D~a 99 (374)
T cd08189 45 KVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCD------AILAVG--GGSVIDCA 99 (374)
T ss_pred HHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCC------EEEEeC--CccHHHHH
Confidence 4566677777766544 4578888899999999998876 444444 44 67754
No 83
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.70 E-value=52 Score=25.27 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=41.2
Q ss_pred CCccccEEeeCCCCCC-HHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecC
Q 047888 93 RRYKPDLIKGDMDSIR-KEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGAL 161 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~-~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~ 161 (274)
.+ +|-+++-.=-|-+ .+..+.++..|..+ .+++=.|-...|..++.++... .+++++|.-
T Consensus 29 ~g-~~~~~lTNns~~s~~~~~~~L~~~Gi~~---~~~~i~ts~~~~~~~l~~~~~~-----~~v~vlG~~ 89 (101)
T PF13344_consen 29 RG-KPVVFLTNNSSRSREEYAKKLKKLGIPV---DEDEIITSGMAAAEYLKEHKGG-----KKVYVLGSD 89 (101)
T ss_dssp TT-SEEEEEES-SSS-HHHHHHHHHHTTTT-----GGGEEEHHHHHHHHHHHHTTS-----SEEEEES-H
T ss_pred cC-CCEEEEeCCCCCCHHHHHHHHHhcCcCC---CcCEEEChHHHHHHHHHhcCCC-----CEEEEEcCH
Confidence 44 4555555555555 45678889999875 4689999999999999995333 289999865
No 84
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=29.69 E-value=2e+02 Score=25.03 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHhcCC---eEEEcCCCCChhHHHHHHHHHHH-hCCCCcCCCcEEEEEecCC-CChhhHHHHHHHHH
Q 047888 105 DSIRKEVMDFYASLGT---KVVDESHDQDTTDLHKCVAYIRD-CTPNLEKSNLRILVAGALG-GRFDHEAGNINVLY 176 (274)
Q Consensus 105 DSi~~~~~~~~~~~g~---~ii~~~~dKD~TD~ekAl~~~~~-~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L~ 176 (274)
|+-.+-+.+.+++.|. .+....-..|.-++..+|+.+.+ ...+ -|++.|++| |.-|.+-.-+.-+.
T Consensus 22 D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~D------lIITTGGtg~g~rDvTpeAv~~l~ 92 (193)
T PRK09417 22 DKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCD------LVLTTGGTGPARRDVTPEATLAVA 92 (193)
T ss_pred echHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCC------EEEECCCCCCCCCCcHHHHHHHHh
Confidence 6656666777777742 22111122445568888888765 3455 788889888 69999988876654
No 85
>PTZ00413 lipoate synthase; Provisional
Probab=29.08 E-value=3.3e+02 Score=26.69 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=64.8
Q ss_pred echHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcC-------------CCCChhHHH
Q 047888 69 DGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDES-------------HDQDTTDLH 135 (274)
Q Consensus 69 DgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~-------------~dKD~TD~e 135 (274)
|||+.++.+..+.+-. ..-++.+.+.+|||-= +.+.++.+.+.|+.++.|. +--++.+.-
T Consensus 209 D~ga~~~a~~I~~Ir~------~~p~~~IevligDf~g-~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sL 281 (398)
T PTZ00413 209 DGGASHVARCVELIKE------SNPELLLEALVGDFHG-DLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSL 281 (398)
T ss_pred hhhHHHHHHHHHHHHc------cCCCCeEEEcCCcccc-CHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHH
Confidence 6889998874332110 0135777888999932 3456677777787776654 223566666
Q ss_pred HHHHHHHHh-CCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCeEEEEe
Q 047888 136 KCVAYIRDC-TPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLS 187 (274)
Q Consensus 136 kAl~~~~~~-~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~i~li~ 187 (274)
..|+.+.+. ... .....=+|+| +|-..+..+..+.-|... +.++.-++
T Consensus 282 e~Lr~AKe~f~~g--i~tcSGiIVG-LGET~eEvie~m~dLrel-GVDivtIG 330 (398)
T PTZ00413 282 KVLEHVKEFTNGA--MLTKSSIMLG-LGETEEEVRQTLRDLRTA-GVSAVTLG 330 (398)
T ss_pred HHHHHHHHHhcCC--ceEeeeeEec-CCCCHHHHHHHHHHHHHc-CCcEEeec
Confidence 667766654 111 0011235677 999999988887776543 33444443
No 86
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=28.89 E-value=2.6e+02 Score=26.53 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 109 KEVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
+++.+.++..|+++..| .++-...+.+++++.+++.+++ -|+-+| || -+|=.
T Consensus 44 ~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D------~IiavG--GGS~iD~a 99 (380)
T cd08185 44 DRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCD------FVVGLG--GGSSMDTA 99 (380)
T ss_pred HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCC------EEEEeC--CccHHHHH
Confidence 45666777778777654 4567888889999999998777 444444 55 66753
No 87
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=28.83 E-value=1.6e+02 Score=27.62 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCe--EEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 109 KEVMDFYASLGTK--VVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 109 ~~~~~~~~~~g~~--ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
+++.+.++..|+. +..+..+-.....+++++.+++...+ -|+-+| || -+|-.
T Consensus 39 ~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d------~IIavG--GGs~~D~a 93 (349)
T cd08550 39 PRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEAD------VIIGVG--GGKTLDTA 93 (349)
T ss_pred HHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCC------EEEEec--CcHHHHHH
Confidence 4556667776753 44566665666788888888887766 444444 55 66653
No 88
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=27.80 E-value=2.9e+02 Score=26.22 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 109 KEVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
+++.+.++..|+++..+. ++-...+.+.+++.+++...+ -|+.+| || -+|=.
T Consensus 46 ~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d------~IIaiG--GGsviD~A 101 (377)
T cd08188 46 DRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCD------VIIAVG--GGSPIDCA 101 (377)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCC------EEEEeC--CchHHHHH
Confidence 456677777777666553 445566678888888887776 444444 55 77764
No 89
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=27.67 E-value=3.9e+02 Score=25.35 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 109 KEVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
+++.+.++..|+++..|. ++.+....+.+++.+++.+.+ -|+-+| || =+|=.
T Consensus 42 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D------~IIavG--GGSviD~A 97 (375)
T cd08179 42 DKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPD------WIIALG--GGSPIDAA 97 (375)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCC------EEEEeC--CccHHHHH
Confidence 567778887787776654 477788888999999998877 444444 55 66654
No 90
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=27.44 E-value=4.3e+02 Score=24.81 Aligned_cols=103 Identities=10% Similarity=0.054 Sum_probs=63.2
Q ss_pred cEEEEEeCCCCCCC---c----hHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHH
Q 047888 41 TYALVVLNQRLPRF---A----PLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMD 113 (274)
Q Consensus 41 ~~avIvlng~~~~~---~----~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~ 113 (274)
+.+++..||+-|-. . .....+..-++++=.|..-|++ ..+.+ ++++...
T Consensus 2 ~IaIltsGG~apGmNa~i~~vv~~a~~~g~~v~G~~~G~~GL~~---------------~~~~~---------l~~~~v~ 57 (317)
T cd00763 2 RIGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIA---------------GDIVP---------LDRYSVS 57 (317)
T ss_pred EEEEEccCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcC---------------CCeEe---------CCHHHhh
Confidence 45778889998742 1 1223333468899889999986 22221 3333333
Q ss_pred HHHhcCCeEEE---cCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhc
Q 047888 114 FYASLGTKVVD---ESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRF 178 (274)
Q Consensus 114 ~~~~~g~~ii~---~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~ 178 (274)
.+...|=.++. .++.++..+.+++++.+.+++-+ .++++|+-| ++.....|.++
T Consensus 58 ~~~~~gGt~LgtsR~~~~~~~~~~~~~~~~l~~~~Id------~Li~IGGdg-----s~~~a~~L~e~ 114 (317)
T cd00763 58 DIINRGGTFLGSARFPEFKDEEGQAKAIEQLKKHGID------ALVVIGGDG-----SYMGAMRLTEH 114 (317)
T ss_pred hHHhCCCeeeccCCCCccCCHHHHHHHHHHHHHcCCC------EEEEECCch-----HHHHHHHHHHc
Confidence 33333322322 23445677899999999999877 788888744 55555555554
No 91
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=27.12 E-value=1.6e+02 Score=27.01 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHhcCCeEEEcC-CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCCh-hhHHHHHH
Q 047888 105 DSIRKEVMDFYASLGTKVVDES-HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRF-DHEAGNIN 173 (274)
Q Consensus 105 DSi~~~~~~~~~~~g~~ii~~~-~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~-DH~lani~ 173 (274)
|+=..-..+++..+|+.+.+.. --.|..+...+|+.+.++ ++ -|++.|++|=-- |+|..-+.
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D------~vI~tGGLGPT~DDiT~e~vA 83 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-AD------VVITTGGLGPTHDDLTAEAVA 83 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CC------EEEECCCcCCCccHhHHHHHH
Confidence 4433345677788887554322 346788999999999998 77 899999999755 45544443
No 92
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=26.64 E-value=2.5e+02 Score=30.01 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=35.0
Q ss_pred HHHHHHH--hcCCeEEEcC---CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 110 EVMDFYA--SLGTKVVDES---HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 110 ~~~~~~~--~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
.+.+.++ ..++.+..+. |+......+.+++.+++.+.+ -|+.+| || =+|=
T Consensus 499 ~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D------~IIaiG--GGSviD~ 554 (862)
T PRK13805 499 KVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPD------TIIALG--GGSPMDA 554 (862)
T ss_pred HHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCC------EEEEeC--CchHHHH
Confidence 4566666 5566665553 578888999999999998877 555555 55 5554
No 93
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.88 E-value=5.7e+02 Score=25.40 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=46.7
Q ss_pred CCccccEEeeCCCCCCHHH----HHHHHhcCCeEEEcCCCCChhHHH----HHHHHHHHhCCCCcCCCcEEEEEecCCCC
Q 047888 93 RRYKPDLIKGDMDSIRKEV----MDFYASLGTKVVDESHDQDTTDLH----KCVAYIRDCTPNLEKSNLRILVAGALGGR 164 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~----~~~~~~~g~~ii~~~~dKD~TD~e----kAl~~~~~~~~~~~~~~~~I~i~Ga~GGR 164 (274)
.|++|-++||| ..++.+ .+.....++++.- .=+++|-. .+++...+.+++ + |+--+.||
T Consensus 128 kG~K~~LvcaD--TFRagAfDQLkqnA~k~~iP~yg---syte~dpv~ia~egv~~fKke~fd-------v-IIvDTSGR 194 (483)
T KOG0780|consen 128 KGYKVALVCAD--TFRAGAFDQLKQNATKARVPFYG---SYTEADPVKIASEGVDRFKKENFD-------V-IIVDTSGR 194 (483)
T ss_pred cCCceeEEeec--ccccchHHHHHHHhHhhCCeeEe---cccccchHHHHHHHHHHHHhcCCc-------E-EEEeCCCc
Confidence 78999999987 223333 3333334566643 33444433 334444444443 4 44578889
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEeCCeEEEEec
Q 047888 165 FDHEAGNINVLYRFSDIRIILLSDDCHIQLLP 196 (274)
Q Consensus 165 ~DH~lani~~L~~~~~~~i~li~~~~~i~ll~ 196 (274)
.-+.-+=+.-+....+ .+..++++|++.
T Consensus 195 h~qe~sLfeEM~~v~~----ai~Pd~vi~VmD 222 (483)
T KOG0780|consen 195 HKQEASLFEEMKQVSK----AIKPDEIIFVMD 222 (483)
T ss_pred hhhhHHHHHHHHHHHh----hcCCCeEEEEEe
Confidence 8776665555544332 344555666654
No 94
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=25.87 E-value=4e+02 Score=27.58 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=67.5
Q ss_pred CcEEEEEeCCCCCCC---c----hHHhcc--CCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHH
Q 047888 40 LTYALVVLNQRLPRF---A----PLLWQH--AKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKE 110 (274)
Q Consensus 40 ~~~avIvlng~~~~~---~----~~l~~~--~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~ 110 (274)
.+.+|++.||+-|-. . ..+... ..-++++-+|..=+++ ..+.+ ++++
T Consensus 80 ~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~---------------~~~v~---------Lt~~ 135 (610)
T PLN03028 80 VRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFA---------------QKTLE---------ITDD 135 (610)
T ss_pred cEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcC---------------CCeEE---------CCHH
Confidence 467888889998852 1 122222 4579999999999997 33222 4556
Q ss_pred HHHHHHhcC-CeEEEcCCCC--ChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhc
Q 047888 111 VMDFYASLG-TKVVDESHDQ--DTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRF 178 (274)
Q Consensus 111 ~~~~~~~~g-~~ii~~~~dK--D~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~ 178 (274)
.++.+...| ..++.-..+| +.-+++++++-+.+++-+ -++++|+- -++.+.+.|.++
T Consensus 136 ~v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id------~LvvIGGd-----dS~~~A~~Lae~ 195 (610)
T PLN03028 136 VLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLD------GLVIIGGV-----TSNTDAAQLAET 195 (610)
T ss_pred HHHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCC------EEEEeCCc-----hHHHHHHHHHHH
Confidence 566666554 3233322222 455889999999988877 78888874 466666777664
No 95
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=25.81 E-value=2.3e+02 Score=24.09 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHH
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRD 143 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~ 143 (274)
..+.||+|++....-..+..+...+.+++++.+.+.....|....++.+-+
T Consensus 57 ~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~ 107 (238)
T PF01497_consen 57 LALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGK 107 (238)
T ss_dssp HHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHH
T ss_pred HhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHH
Confidence 347799999887763445556667779999877554443677677766644
No 96
>PRK09273 hypothetical protein; Provisional
Probab=24.92 E-value=2.6e+02 Score=24.98 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCeEEEcCC---C---CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCe
Q 047888 109 KEVMDFYASLGTKVVDESH---D---QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIR 182 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~~---d---KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~ 182 (274)
+++.++++.+|-+|+.+.+ + -|+.|+...+..+...+.. +..++++++|= +-.-.+-|++++.
T Consensus 20 ~~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~g~~-----d~GIliCGTGi------G~siAANK~pGIr 88 (211)
T PRK09273 20 EALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLNSKAV-----DFVVTGCGTGQ------GAMLALNSFPGVV 88 (211)
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHcCCC-----CEEEEEcCcHH------HHHHHHhcCCCeE
Confidence 3567888899999988776 2 4788877777776655433 26777777771 2222234566655
Q ss_pred EEEEeC
Q 047888 183 IILLSD 188 (274)
Q Consensus 183 i~li~~ 188 (274)
.-+..+
T Consensus 89 aalc~d 94 (211)
T PRK09273 89 CGYCID 94 (211)
T ss_pred EEEeCC
Confidence 554444
No 97
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=24.89 E-value=2.5e+02 Score=26.62 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCeEEEc--CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 110 EVMDFYASLGTKVVDE--SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~--~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
++.+.++..|+++..+ .++-...+.+++++.+++.+++ -|+-+| || -+|=.
T Consensus 38 ~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D------~IIaiG--GGS~~D~a 91 (374)
T cd08183 38 WLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCD------VVIAIG--GGSVIDAG 91 (374)
T ss_pred HHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCC------EEEEec--CchHHHHH
Confidence 4556677777765443 4555566788899988888777 444444 55 66754
No 98
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=24.82 E-value=1.9e+02 Score=29.73 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHhcCCeEEEcC-CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHH
Q 047888 105 DSIRKEVMDFYASLGTKVVDES-HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINV 174 (274)
Q Consensus 105 DSi~~~~~~~~~~~g~~ii~~~-~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~ 174 (274)
||-.+-+...+++.|.++..+. ...|...++.+|+.+.+ ..+ -|+..|++| |+.|++-.-+.-
T Consensus 393 dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~-~~D------lIIttGG~s~G~~D~~~~al~~ 457 (597)
T PRK14491 393 DSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAA-QAD------VVISSGGVSVGDADYIKTALAK 457 (597)
T ss_pred eCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhh-cCC------EEEEcCCccCCCcccHHHHHHh
Confidence 7877788888999998775442 34556667888887754 334 677778877 799998766544
No 99
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.38 E-value=2.1e+02 Score=26.82 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCeE--EEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 110 EVMDFYASLGTKV--VDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 110 ~~~~~~~~~g~~i--i~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
.+.+.+++.|+++ ..+.++....+.+++++.+++..++ -|+.+| || -+|=.
T Consensus 40 ~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D------~IIavG--GGS~iD~a 93 (351)
T cd08170 40 KIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGAD------VVIGIG--GGKTLDTA 93 (351)
T ss_pred HHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCC------EEEEec--CchhhHHH
Confidence 4455566666653 4567888889999999999998777 555555 55 66653
No 100
>PRK10444 UMP phosphatase; Provisional
Probab=24.29 E-value=1.7e+02 Score=26.17 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=26.2
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHh
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDC 144 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~ 144 (274)
.|...-++.+.----..+..+.++..|.++ ++++-.|-.+.|..++.++
T Consensus 32 ~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~---~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 32 KGLPLVLLTNYPSQTGQDLANRFATAGVDV---PDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHcCCCC---CHhhEecHHHHHHHHHHhC
Confidence 455555555554333344555566666543 3555566666666666554
No 101
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=24.29 E-value=3.5e+02 Score=25.51 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 109 KEVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
+++.+.+++.|+++..+ .++......+++++.+++.+.+ -|+-+| || =+|=
T Consensus 42 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d------~IIaiG--GGSviD~ 96 (370)
T cd08192 42 ARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCD------GVIAFG--GGSALDL 96 (370)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCC------EEEEeC--CchHHHH
Confidence 45667777777666544 4677777888999999888776 444444 55 5554
No 102
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=24.24 E-value=4.1e+02 Score=24.47 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=37.2
Q ss_pred CccccEEeeCCCCCC---HHHHHHHHhcCCeEEE---cCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chh
Q 047888 94 RYKPDLIKGDMDSIR---KEVMDFYASLGTKVVD---ESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFD 166 (274)
Q Consensus 94 ~i~Pd~iiGDfDSi~---~~~~~~~~~~g~~ii~---~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~D 166 (274)
+...-++|.|=.+.+ +.+.+.+++. +++.. ..++++..+.+.+++.+++...+ -|+.+| || -+|
T Consensus 22 g~~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d------~IIaiG--GGs~~D 92 (332)
T cd07766 22 GFDRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVD------AVIAVG--GGSTLD 92 (332)
T ss_pred CCCeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcC------EEEEeC--CchHHH
Confidence 444445566533322 2344555543 33322 24568888999999999887666 444444 55 555
Q ss_pred h
Q 047888 167 H 167 (274)
Q Consensus 167 H 167 (274)
=
T Consensus 93 ~ 93 (332)
T cd07766 93 T 93 (332)
T ss_pred H
Confidence 4
No 103
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=23.97 E-value=2e+02 Score=22.77 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=35.9
Q ss_pred ee-CCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHH
Q 047888 101 KG-DMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYI 141 (274)
Q Consensus 101 iG-DfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~ 141 (274)
+| .++.++++++++.++++.+++..|.+=.+.|....+...
T Consensus 80 ~~~~~~~iP~~~i~~A~~~~lPli~ip~~~~f~~I~~~v~~~ 121 (123)
T PF07905_consen 80 TGRYLDEIPEEIIELADELGLPLIEIPWEVPFSDITREVMRA 121 (123)
T ss_pred ccCccccCCHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHH
Confidence 56 789999999999999999999999999999988777543
No 104
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=23.14 E-value=5e+02 Score=25.90 Aligned_cols=67 Identities=15% Similarity=0.330 Sum_probs=41.6
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHh----cCCeEEEcCCCCChhHH-HHHHHHHHHhCCCCcCCCcEEEEEecCCCC--h
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYAS----LGTKVVDESHDQDTTDL-HKCVAYIRDCTPNLEKSNLRILVAGALGGR--F 165 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~----~g~~ii~~~~dKD~TD~-ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR--~ 165 (274)
.+.+|-++.=| -.+|.+.++++. .++++.....++|--|. ..||+++.+.+++ ++|+ -+.|| +
T Consensus 127 ~~~kvllVaaD--~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~D-------vvIv-DTAGRl~i 196 (451)
T COG0541 127 KGKKVLLVAAD--TYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYD-------VVIV-DTAGRLHI 196 (451)
T ss_pred cCCceEEEecc--cCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCC-------EEEE-eCCCcccc
Confidence 56666666544 347777766654 46777544445667766 5678888888765 5444 45565 4
Q ss_pred hhHH
Q 047888 166 DHEA 169 (274)
Q Consensus 166 DH~l 169 (274)
|..|
T Consensus 197 de~L 200 (451)
T COG0541 197 DEEL 200 (451)
T ss_pred cHHH
Confidence 5544
No 105
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=23.03 E-value=3e+02 Score=25.17 Aligned_cols=61 Identities=20% Similarity=0.401 Sum_probs=37.3
Q ss_pred CCCCEEEEEeecCCcccEEEcc-ceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEE
Q 047888 209 VEGPHCGLIPIGMPSGSTSTTG-LQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTIS 270 (274)
Q Consensus 209 ~~g~~~SliPl~~~~~~vt~~G-lky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~ 270 (274)
...+.++++++++.+ .|+..| -.|.|....--|...--+--.-.+.+++|+..++.-+.+.
T Consensus 44 ~~~~E~~vv~l~G~~-~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~ 105 (261)
T PF04962_consen 44 LERRELGVVNLGGKA-TVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVC 105 (261)
T ss_dssp CCSEEEEEEEESSSE-EEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEE
T ss_pred CCCcEEEEEEeCCEE-EEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEE
Confidence 346789999999975 599988 7888888754554332222333455677777766555544
No 106
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=22.93 E-value=4.7e+02 Score=24.93 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCeEEEcCCCC---ChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhH
Q 047888 110 EVMDFYASLGTKVVDESHDQ---DTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHE 168 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~dK---D~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~ 168 (274)
++.+.++..|+++..|...+ ...+...+++.+++.+.+ -|+ |.-|| -+|=.
T Consensus 41 ~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D------~II--aiGGGS~iD~a 95 (386)
T cd08191 41 ELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPD------VII--GLGGGSCIDLA 95 (386)
T ss_pred HHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCC------EEE--EeCCchHHHHH
Confidence 45556777788887775333 455566777777776665 444 44455 66653
No 107
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=22.88 E-value=5.8e+02 Score=23.15 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=63.3
Q ss_pred ccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCC-ChhHHHHHHHHHHHhCCCCcCCCcEEEEE--ecC---C-CChhh
Q 047888 95 YKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQ-DTTDLHKCVAYIRDCTPNLEKSNLRILVA--GAL---G-GRFDH 167 (274)
Q Consensus 95 i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dK-D~TD~ekAl~~~~~~~~~~~~~~~~I~i~--Ga~---G-GR~DH 167 (274)
+.|-+-||=++.-+...++...+.|.+|+.-..-- +-.|...|++++.+.|.. +|+++ |.. + .|.|=
T Consensus 108 ~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~------~i~l~~rG~s~y~~~~~~~~ 181 (260)
T TIGR01361 108 YADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNG------NVILCERGIRTFEKATRNTL 181 (260)
T ss_pred hCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC------cEEEEECCCCCCCCCCcCCc
Confidence 45667799999999999999999998887543333 688999999999988876 66665 442 2 37787
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 047888 168 EAGNINVLYRFSDIRIIL 185 (274)
Q Consensus 168 ~lani~~L~~~~~~~i~l 185 (274)
-|..|..|.+..+.++.+
T Consensus 182 dl~~i~~lk~~~~~pV~~ 199 (260)
T TIGR01361 182 DLSAVPVLKKETHLPIIV 199 (260)
T ss_pred CHHHHHHHHHhhCCCEEE
Confidence 778888777644555554
No 108
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=22.51 E-value=3.8e+02 Score=23.09 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=36.2
Q ss_pred ccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEec
Q 047888 97 PDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGA 160 (274)
Q Consensus 97 Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga 160 (274)
|-+++-. ...+++.++.++..|++++... ...-|+..+++.+.+.+.. +|++.|+
T Consensus 95 ~~~v~t~-~~~~~~~~~~l~~~~~~v~~~~--~~~~dl~~~l~~L~~~g~~------~vlveGG 149 (217)
T PRK05625 95 KTIVAVS-EAAPSEKVEELEKKGAEVIVAG--GERVDLPDLLEDLYERGIK------RLMVEGG 149 (217)
T ss_pred CEEEEEc-CCCCHHHHHHHHHCCCEEEEeC--CCCcCHHHHHHHHHHCCCC------EEEEecC
Confidence 4444433 1223445566777888887542 3357888999999888776 7888775
No 109
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=22.48 E-value=3.9e+02 Score=26.65 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=56.5
Q ss_pred cEEEEEeCCCCCCC---c----hHHhccC--CEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHH
Q 047888 41 TYALVVLNQRLPRF---A----PLLWQHA--KLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEV 111 (274)
Q Consensus 41 ~~avIvlng~~~~~---~----~~l~~~~--~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~ 111 (274)
+.|++..||+-|-. . ...+... .-++++-.|..=+++ ..+. -++++.
T Consensus 89 ~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~---------------~~~i---------~Lt~~~ 144 (459)
T PTZ00286 89 KAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYK---------------EDWI---------KLDPKD 144 (459)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcC---------------CCeE---------ECCHHH
Confidence 34566668877732 1 2233222 469999999999987 3221 245554
Q ss_pred HHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC
Q 047888 112 MDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG 163 (274)
Q Consensus 112 ~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG 163 (274)
.+-+...|=.++--...+ -|.+++++.+.+++-+ .++++|+-|.
T Consensus 145 V~~i~~~GGTiLGTSR~~--~~~~~iv~~L~~~~I~------~L~vIGGdgT 188 (459)
T PTZ00286 145 VKTIHRLGGTILGSSRGG--FDPKVMVDTLIRHGIN------ILFTLGGDGT 188 (459)
T ss_pred hhhHHhCCCceeccCCCh--hhHHHHHHHHHHcCCC------EEEEeCCchH
Confidence 444444443444333322 3899999999999887 7888888653
No 110
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=22.30 E-value=7.9e+02 Score=24.53 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=53.2
Q ss_pred eeCCCCCCHHHHHHHHhcCCeEEEcCCC-------------CChhHHHHHHHHHHHhCCCCcCCCcE-EEEEecCCCChh
Q 047888 101 KGDMDSIRKEVMDFYASLGTKVVDESHD-------------QDTTDLHKCVAYIRDCTPNLEKSNLR-ILVAGALGGRFD 166 (274)
Q Consensus 101 iGDfDSi~~~~~~~~~~~g~~ii~~~~d-------------KD~TD~ekAl~~~~~~~~~~~~~~~~-I~i~Ga~GGR~D 166 (274)
.|.-|+++++.++.+++.|+..+...++ ...-|...|++.+++.+.. ... =+++|-.|--.+
T Consensus 261 ~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~----~In~DLI~GLPgEt~e 336 (488)
T PRK08207 261 AGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFD----NINMDLIIGLPGEGLE 336 (488)
T ss_pred cCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCC----eEEEEEEeCCCCCCHH
Confidence 3788899999998888888776655433 2334566677777777653 112 246677788999
Q ss_pred hHHHHHHHHHhcCC
Q 047888 167 HEAGNINVLYRFSD 180 (274)
Q Consensus 167 H~lani~~L~~~~~ 180 (274)
+....+..+.++..
T Consensus 337 d~~~tl~~l~~L~p 350 (488)
T PRK08207 337 EVKHTLEEIEKLNP 350 (488)
T ss_pred HHHHHHHHHHhcCc
Confidence 99999988877653
No 111
>PLN02428 lipoic acid synthase
Probab=22.27 E-value=5.6e+02 Score=24.57 Aligned_cols=100 Identities=12% Similarity=0.159 Sum_probs=57.3
Q ss_pred echHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCC-------------ChhHHH
Q 047888 69 DGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQ-------------DTTDLH 135 (274)
Q Consensus 69 DgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dK-------------D~TD~e 135 (274)
|+|+.++.+.+..+-.. .-.+...+.+.||=- +++.++.+.+.|..++.+-.|= ++-+.-
T Consensus 162 D~ga~~~~elir~Ir~~------~P~i~Ie~L~pdf~~-d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~L 234 (349)
T PLN02428 162 DGGSGHFAETVRRLKQL------KPEILVEALVPDFRG-DLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSL 234 (349)
T ss_pred cccHHHHHHHHHHHHHh------CCCcEEEEeCccccC-CHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHH
Confidence 88988888743321100 012344555556521 3778888888888777665542 333444
Q ss_pred HHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhc
Q 047888 136 KCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRF 178 (274)
Q Consensus 136 kAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~ 178 (274)
.+++.+.+..+. .....=+++|- |-..++....+..|...
T Consensus 235 e~L~~ak~~~pG--i~tkSg~MvGL-GET~Edv~e~l~~Lrel 274 (349)
T PLN02428 235 DVLKHAKESKPG--LLTKTSIMLGL-GETDEEVVQTMEDLRAA 274 (349)
T ss_pred HHHHHHHHhCCC--CeEEEeEEEec-CCCHHHHHHHHHHHHHc
Confidence 555555555211 11113345555 88999988888887654
No 112
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=22.05 E-value=2.2e+02 Score=29.72 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHhcCCeEEEcCC-CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHH
Q 047888 105 DSIRKEVMDFYASLGTKVVDESH-DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINV 174 (274)
Q Consensus 105 DSi~~~~~~~~~~~g~~ii~~~~-dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~ 174 (274)
||-.+-+.+.+++.|.+++.+.. ..|...++.+|+.+.+...+ -|++.|++| |..|+.-.-+..
T Consensus 208 dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~D------lvItTGGts~G~~D~v~~~l~~ 273 (659)
T PLN02699 208 DSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVD------ILLTSGGVSMGDRDFVKPLLEK 273 (659)
T ss_pred eChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCC------EEEECCCCCCCCCccHHHHHHh
Confidence 66666777888999988775543 34556678888877654455 788888888 599996665543
No 113
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=21.97 E-value=3e+02 Score=25.10 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=45.1
Q ss_pred CCccccEEeeCCCCCCH--HHH-HHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEe-cCCCChhhH
Q 047888 93 RRYKPDLIKGDMDSIRK--EVM-DFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAG-ALGGRFDHE 168 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~--~~~-~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~G-a~GGR~DH~ 168 (274)
.-++||+.-||==|.+. ..+ ++.+. +.|++-.-|+.+-++++..++... .|=++| .+||-+=++
T Consensus 69 ~v~vPD~~~Gdp~~~~~~~~~~~~w~~~-------~~~~~~~~~i~~v~k~lk~~g~~k-----kIGv~GfCwGak~vv~ 136 (242)
T KOG3043|consen 69 TVLVPDFFRGDPWSPSLQKSERPEWMKG-------HSPPKIWKDITAVVKWLKNHGDSK-----KIGVVGFCWGAKVVVT 136 (242)
T ss_pred EEEcchhhcCCCCCCCCChhhhHHHHhc-------CCcccchhHHHHHHHHHHHcCCcc-----eeeEEEEeecceEEEE
Confidence 45779999998666552 222 33333 567777788889999999888443 788888 567755444
Q ss_pred HHH
Q 047888 169 AGN 171 (274)
Q Consensus 169 lan 171 (274)
+.+
T Consensus 137 ~~~ 139 (242)
T KOG3043|consen 137 LSA 139 (242)
T ss_pred eec
Confidence 443
No 114
>PLN02335 anthranilate synthase
Probab=21.97 E-value=1.7e+02 Score=25.75 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=31.8
Q ss_pred CC-CCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCC
Q 047888 103 DM-DSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGR 164 (274)
Q Consensus 103 Df-DSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR 164 (274)
|+ ||.+-...+++++.|..+...+.+. .+.+. +....++ -|++.|+-|.=
T Consensus 25 D~~dsft~~i~~~L~~~g~~~~v~~~~~--~~~~~----~~~~~~d------~iVisgGPg~p 75 (222)
T PLN02335 25 DNYDSFTYNLCQYMGELGCHFEVYRNDE--LTVEE----LKRKNPR------GVLISPGPGTP 75 (222)
T ss_pred ECCCCHHHHHHHHHHHCCCcEEEEECCC--CCHHH----HHhcCCC------EEEEcCCCCCh
Confidence 76 8888888888888887777665432 22222 2223344 68888887763
No 115
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=21.93 E-value=4.8e+02 Score=24.73 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 110 EVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
.+.+.+++.|+++..+ .++-+..+.+.+++.+++.+.+ -|+-+| || =+|=
T Consensus 42 ~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D------~IIaiG--GGS~~D~ 95 (375)
T cd08194 42 KLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCD------VIIALG--GGSPIDT 95 (375)
T ss_pred HHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCC------EEEEeC--CchHHHH
Confidence 4667777777766544 4566777888999999888877 554444 55 5554
No 116
>PTZ00287 6-phosphofructokinase; Provisional
Probab=21.71 E-value=1.1e+03 Score=27.25 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=65.1
Q ss_pred CCCcEEEEEeCCCCCCC---c----hHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHH
Q 047888 38 PSLTYALVVLNQRLPRF---A----PLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKE 110 (274)
Q Consensus 38 ~~~~~avIvlng~~~~~---~----~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~ 110 (274)
...+.+||..||+-|-. + ..+.......++-+ |..-|++ . |+=-++++
T Consensus 835 ~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g~~~gf~-G~~GLl~---------------~---------~~i~Lt~~ 889 (1419)
T PTZ00287 835 FEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKGVCIAFY-GLYGLLN---------------N---------KYIIIDDD 889 (1419)
T ss_pred CCcEEEEECcCCCcHhHHHHHHHHHHHHHHhCCeEEEEe-CchhhcC---------------C---------CeEECCHH
Confidence 44577889999998852 1 12211223344444 5556655 2 22236677
Q ss_pred HHHHHHhcCCeEE-Ec---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhc
Q 047888 111 VMDFYASLGTKVV-DE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRF 178 (274)
Q Consensus 111 ~~~~~~~~g~~ii-~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~ 178 (274)
....+..+|=.++ .- .+-++.-..++|++-+.+++-+ -++++|+ |-++.+.+.|.++
T Consensus 890 ~V~~i~n~GGtiLlgssR~~~f~t~e~~~ka~~~lk~l~ID------~LVvIGG-----DgS~t~A~~LaE~ 950 (1419)
T PTZ00287 890 NIAKHVNQGGLELTGNSPEHSLFDKENRNKVCETVTNLQLN------GLVMPGS-----NVTITEAALLAEY 950 (1419)
T ss_pred HHhhHHHcCCeeecCCcCCCCCCCHHHHHHHHHHHHHhCCC------EEEEECC-----chHHHHHHHHHHH
Confidence 6666666653333 11 2335677899999999999877 7888888 4567777777765
No 117
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=21.21 E-value=2.8e+02 Score=23.55 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=40.4
Q ss_pred EEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhh
Q 047888 99 LIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDH 167 (274)
Q Consensus 99 ~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH 167 (274)
++|=-+||.+-.+.+++++.|.++...+.++- +. +.+....++ -|++.|+-|.--|-
T Consensus 3 l~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~--~~----~~~~~~~~d------~iils~GPg~p~~~ 59 (187)
T PRK08007 3 LLIDNYDSFTWNLYQYFCELGADVLVKRNDAL--TL----ADIDALKPQ------KIVISPGPCTPDEA 59 (187)
T ss_pred EEEECCCccHHHHHHHHHHCCCcEEEEeCCCC--CH----HHHHhcCCC------EEEEcCCCCChHHC
Confidence 46667999999999999999988887766532 22 222233455 79999999985553
No 118
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=21.08 E-value=1.8e+02 Score=29.65 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHhcCCeEEEcCCCC-ChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 105 DSIRKEVMDFYASLGTKVVDESHDQ-DTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 105 DSi~~~~~~~~~~~g~~ii~~~~dK-D~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
||-+.-+..++++.|.++..++.-+ |..++..+|+.+.+ .++ -|++.|+++ |+.|++-.-+.-+
T Consensus 205 dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~-~~D------lVIttGGtS~G~~D~~~~al~~l 270 (546)
T PRK14497 205 ESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAIS-VAD------VLILTGGTSAGEKDFVHQAIREL 270 (546)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhh-cCC------EEEEcCCccCCCCccHHHHHhhc
Confidence 5545556677888898776554444 44456677776654 234 688888776 7999988877654
No 119
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=20.32 E-value=96 Score=30.88 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=47.9
Q ss_pred ccCCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHH
Q 047888 91 IRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEA 169 (274)
Q Consensus 91 ~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~l 169 (274)
.+.-++|.+|+-|.. .|-++|.++..++|-||.=|.--+|..+..+-++ |.=+=..=|++|..|
T Consensus 43 GhAPyrPRYilPDY~--------kfl~qGs~fLeL~pp~DldeAln~L~IlY~HVPS-------VT~~PVylG~LD~lL 106 (487)
T PF11230_consen 43 GHAPYRPRYILPDYA--------KFLKQGSEFLELEPPKDLDEALNNLLILYHHVPS-------VTSFPVYLGQLDRLL 106 (487)
T ss_pred CCCCCCCceeCccHH--------HHHhccchhcccCCcccHHHHHHhhhHHhhcCCc-------cCCccceeccHhhhh
Confidence 347899999999864 5556799999999999999988888888887665 333333337777654
No 120
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=20.15 E-value=7.4e+02 Score=24.02 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=47.0
Q ss_pred eCCCCCCHHHHHHHHhcCCeEEEcCC-------------CCChhHHHHHHHHHHHhCCCCcCCCcEE---EEEecCCCCh
Q 047888 102 GDMDSIRKEVMDFYASLGTKVVDESH-------------DQDTTDLHKCVAYIRDCTPNLEKSNLRI---LVAGALGGRF 165 (274)
Q Consensus 102 GDfDSi~~~~~~~~~~~g~~ii~~~~-------------dKD~TD~ekAl~~~~~~~~~~~~~~~~I---~i~Ga~GGR~ 165 (274)
.+-++++++.++.+++.|+..+.+.. ..+.-+...|++.+.+.+.. .| +++|..|--.
T Consensus 134 ~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~------~i~~dlI~GlP~qt~ 207 (430)
T PRK08208 134 TSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFP------ILNIDLIYGIPGQTH 207 (430)
T ss_pred eCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC------eEEEEeecCCCCCCH
Confidence 45566677777777666655443321 12334667788888877654 33 5778788888
Q ss_pred hhHHHHHHHHHhcC
Q 047888 166 DHEAGNINVLYRFS 179 (274)
Q Consensus 166 DH~lani~~L~~~~ 179 (274)
++....+..+....
T Consensus 208 e~~~~~l~~~~~l~ 221 (430)
T PRK08208 208 ASWMESLDQALVYR 221 (430)
T ss_pred HHHHHHHHHHHhCC
Confidence 88888888877654
Done!