Query 047888
Match_columns 274
No_of_seqs 129 out of 1044
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:46:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s4y_A Thiamin pyrophosphokina 100.0 3.8E-59 1.3E-63 419.7 24.1 218 38-272 19-246 (247)
2 3k94_A Thiamin pyrophosphokina 100.0 1.2E-57 4.1E-62 404.2 20.6 210 41-274 1-212 (223)
3 3lm8_A Thiamine pyrophosphokin 100.0 2.1E-57 7.1E-62 402.5 20.9 210 40-273 1-214 (222)
4 2g9z_A Thiamine pyrophosphokin 100.0 3.7E-57 1.3E-61 423.8 22.8 249 21-274 46-340 (348)
5 3mel_A Thiamin pyrophosphokina 100.0 2.8E-57 9.5E-62 401.7 19.3 210 40-274 1-214 (222)
6 3ihk_A Thiamin pyrophosphokina 100.0 1.3E-55 4.5E-60 390.0 22.9 204 40-274 1-209 (218)
7 3l8m_A Probable thiamine pyrop 100.0 3.5E-56 1.2E-60 392.2 17.1 207 41-274 1-212 (212)
8 1ig0_A Thiamin pyrophosphokina 100.0 1.8E-55 6E-60 409.0 19.3 229 37-273 34-312 (319)
9 3cq9_A Uncharacterized protein 100.0 1.3E-55 4.5E-60 392.1 16.4 208 41-274 3-214 (227)
10 2omk_A Hypothetical protein; s 100.0 3E-51 1E-55 364.9 21.0 198 38-271 29-230 (231)
11 3he8_A Ribose-5-phosphate isom 83.6 8.7 0.0003 31.2 9.6 48 110-162 17-68 (149)
12 3s5p_A Ribose 5-phosphate isom 82.1 6.4 0.00022 32.6 8.3 83 63-188 23-109 (166)
13 3ph3_A Ribose-5-phosphate isom 82.1 10 0.00035 31.4 9.6 64 62-162 21-88 (169)
14 1o1x_A Ribose-5-phosphate isom 81.5 10 0.00035 31.0 9.3 64 62-162 13-80 (155)
15 3sgw_A Ribose 5-phosphate isom 79.4 11 0.00036 31.8 8.9 83 63-188 31-120 (184)
16 2vvp_A Ribose-5-phosphate isom 77.7 16 0.00054 30.1 9.3 48 110-162 20-72 (162)
17 3k7p_A Ribose 5-phosphate isom 76.1 12 0.0004 31.4 8.2 69 109-188 38-112 (179)
18 2vvr_A Ribose-5-phosphate isom 74.3 17 0.00057 29.5 8.5 50 108-162 16-69 (149)
19 3pzy_A MOG; ssgcid, seattle st 74.1 3.7 0.00013 33.5 4.6 66 104-175 25-91 (164)
20 4em8_A Ribose 5-phosphate isom 72.9 8.8 0.0003 31.1 6.5 61 63-162 9-74 (148)
21 1y5e_A Molybdenum cofactor bio 70.7 7 0.00024 31.8 5.6 68 100-173 20-95 (169)
22 3rfq_A Pterin-4-alpha-carbinol 69.1 7.5 0.00026 32.5 5.5 65 104-174 47-113 (185)
23 1mkz_A Molybdenum cofactor bio 68.5 7.4 0.00025 31.8 5.3 68 100-173 17-92 (172)
24 3kbq_A Protein TA0487; structu 66.5 10 0.00035 31.3 5.8 66 104-176 21-88 (172)
25 2g2c_A Putative molybdenum cof 64.1 9.3 0.00032 31.0 5.0 65 104-174 23-93 (167)
26 2pbq_A Molybdenum cofactor bio 62.7 16 0.00054 30.0 6.2 66 104-175 23-93 (178)
27 2r7a_A Bacterial heme binding 62.4 18 0.00061 30.5 6.8 50 93-142 56-106 (256)
28 3md9_A Hemin-binding periplasm 62.3 18 0.00061 30.5 6.8 50 93-142 56-105 (255)
29 2is8_A Molybdopterin biosynthe 60.4 12 0.0004 30.2 5.0 66 104-175 19-87 (164)
30 2r79_A Periplasmic binding pro 59.3 22 0.00076 30.5 7.0 50 93-142 56-105 (283)
31 3c5y_A Ribose/galactose isomer 57.6 22 0.00074 30.9 6.3 49 109-162 39-94 (231)
32 2pjk_A 178AA long hypothetical 56.2 12 0.00042 30.8 4.4 64 105-174 39-105 (178)
33 2qjv_A Uncharacterized IOLB-li 54.4 63 0.0021 28.6 9.0 73 193-271 34-109 (270)
34 1uuy_A CNX1, molybdopterin bio 54.3 21 0.00073 28.7 5.6 65 105-175 24-96 (167)
35 2ppw_A Conserved domain protei 54.2 25 0.00087 30.2 6.2 49 109-162 23-78 (216)
36 3iwt_A 178AA long hypothetical 53.5 18 0.00061 29.3 5.0 64 104-173 38-104 (178)
37 3ono_A Ribose/galactose isomer 51.7 46 0.0016 28.5 7.4 48 110-162 24-77 (214)
38 1di6_A MOGA, molybdenum cofact 49.7 31 0.0011 28.8 6.0 65 104-174 21-90 (195)
39 1n2z_A Vitamin B12 transport p 43.2 48 0.0016 27.6 6.3 46 95-141 56-101 (245)
40 1viz_A PCRB protein homolog; s 43.0 53 0.0018 28.4 6.6 58 122-189 12-70 (240)
41 3w01_A Heptaprenylglyceryl pho 42.5 64 0.0022 27.9 7.0 58 121-188 14-72 (235)
42 3vzx_A Heptaprenylglyceryl pho 39.0 56 0.0019 28.1 6.1 59 121-189 9-68 (228)
43 1o2d_A Alcohol dehydrogenase, 38.6 77 0.0026 28.7 7.3 39 109-147 59-100 (371)
44 1g8l_A Molybdopterin biosynthe 37.9 42 0.0014 31.3 5.5 65 104-175 202-268 (411)
45 1jlj_A Gephyrin; globular alph 36.2 49 0.0017 27.3 5.1 66 104-175 32-103 (189)
46 2f6u_A GGGPS, (S)-3-O-geranylg 35.7 72 0.0025 27.4 6.2 58 122-189 12-70 (234)
47 4e7p_A Response regulator; DNA 32.5 1.3E+02 0.0045 22.1 6.8 85 39-137 19-112 (150)
48 3bfj_A 1,3-propanediol oxidore 30.6 1E+02 0.0035 27.9 6.7 39 109-147 53-94 (387)
49 3ox4_A Alcohol dehydrogenase 2 30.3 85 0.0029 28.6 6.2 38 110-147 50-90 (383)
50 2q8p_A Iron-regulated surface 26.8 59 0.002 27.2 4.1 45 95-141 59-103 (260)
51 1uz5_A MOEA protein, 402AA lon 26.7 92 0.0032 28.9 5.8 65 104-175 205-271 (402)
52 1rrm_A Lactaldehyde reductase; 26.7 1.3E+02 0.0045 27.1 6.7 50 110-167 50-103 (386)
53 3psh_A Protein HI_1472; substr 26.5 1.2E+02 0.0042 26.2 6.4 35 94-129 82-116 (326)
54 1vlj_A NADH-dependent butanol 25.4 1.4E+02 0.0049 27.2 6.8 50 110-167 63-116 (407)
55 4exb_A Putative uncharacterize 25.2 2E+02 0.007 24.9 7.5 59 109-175 219-285 (292)
56 2fts_A Gephyrin; gephyrin, neu 24.8 95 0.0032 28.9 5.5 62 104-172 206-269 (419)
57 4hn9_A Iron complex transport 23.6 1.1E+02 0.0036 26.9 5.4 45 94-141 114-158 (335)
58 1jq5_A Glycerol dehydrogenase; 21.9 1.9E+02 0.0064 25.9 6.8 44 110-159 49-94 (370)
59 3nvt_A 3-deoxy-D-arabino-heptu 20.2 4.2E+02 0.014 24.3 8.8 87 94-187 224-317 (385)
60 4go7_X Aspartokinase; transfer 20.1 33 0.0011 28.9 1.1 67 99-168 119-196 (200)
No 1
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=100.00 E-value=3.8e-59 Score=419.67 Aligned_cols=218 Identities=43% Similarity=0.785 Sum_probs=195.5
Q ss_pred CCCcEEEEEeCCCCCCCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHh
Q 047888 38 PSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYAS 117 (274)
Q Consensus 38 ~~~~~avIvlng~~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~ 117 (274)
..+++|+||+||+++..+..+|++++++||||||||+|++++++ .+.++.||+|||||||++++++++|++
T Consensus 19 ~~~~~~lIv~ng~~~~~~~~~~~~~~~~i~aDgGa~~l~~~~~~---------~~~~~~Pd~ivGD~DSi~~~~~~~~~~ 89 (247)
T 3s4y_A 19 GNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEG---------ERESFLPEFINGDFDSIRPEVREYYAT 89 (247)
T ss_dssp -CCCEEEEECSSCCCTTHHHHHHHCSCEEEETTHHHHHHHHTTT---------CGGGCCCSEEEECCSSSCHHHHHHHHH
T ss_pred CCCCEEEEEECCcchHHHHHHHhhCCEEEEEchHHHHHHHhccc---------cccCCCccEEEcCCcCCCHHHHHHHHh
Confidence 34689999999999986678999999999999999999984331 246899999999999999999999999
Q ss_pred cCCeEEEcCCCCChhHHHHHHHHHHHh------CCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcC---CCeEEEEeC
Q 047888 118 LGTKVVDESHDQDTTDLHKCVAYIRDC------TPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFS---DIRIILLSD 188 (274)
Q Consensus 118 ~g~~ii~~~~dKD~TD~ekAl~~~~~~------~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~---~~~i~li~~ 188 (274)
+++++++ +||||+||+||||+++.++ ++. +|+++||+|||+||+|+||++|+++. +.+++++++
T Consensus 90 ~~~~i~~-~peKD~TD~ekAl~~~~~~~~~~~~~~~------~I~ilGa~GGR~DH~Lani~lL~~~~~~~~~~i~lid~ 162 (247)
T 3s4y_A 90 KGCELIS-TPDQDHTDFTKCLKMLQKKIEEKDLKVD------VIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQE 162 (247)
T ss_dssp TTCEEEE-CCCTTSCHHHHHHHHHHHHHHHTTCCCS------EEEEECCSSSSHHHHHHHHHHHHHGGGTCSSCEEEEET
T ss_pred cCCEEEE-CCCCCcCHHHHHHHHHHHhhhhccCCCC------EEEEEecCCCchhHHHHHHHHHHHHhhccCceEEEEeC
Confidence 9999986 6899999999999999876 455 89999999999999999999999873 478999999
Q ss_pred CeEEEEecCCceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECc-eEEEEEeCCEEE
Q 047888 189 DCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGE-KVTVRSDSDLLW 267 (274)
Q Consensus 189 ~~~i~ll~~g~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~-~v~I~~~~g~l~ 267 (274)
++.+|++++| +|++..+....|++|||||++++++++|++||||||+++.+.+++++|+||++.++ .|+|+++++++|
T Consensus 163 ~n~i~ll~~G-~~~i~~~~~~~g~~vSlipl~~~~~~lt~~Glky~L~~~~l~~g~~~~~SNe~~~~~~v~I~t~~~~l~ 241 (247)
T 3s4y_A 163 ESLIYLLQPG-KHRLHVDTGMEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLW 241 (247)
T ss_dssp TEEEEEECSE-EEEEEC---CEEEEEEEECCSSCEEEEEEESBSSCCSSEEEBTTTBCEEEECBCSCSEEEEEESSCEEE
T ss_pred CeEEEEEcCC-CEEEEEcCCCCCCEEEEEECCCceeEEEEeccEEECCCCeecCCCceEEeeEEeCCceEEEEECCCEEE
Confidence 9999999887 78887644455799999999988889999999999999999999999999999988 899999999999
Q ss_pred EEEEc
Q 047888 268 TISIK 272 (274)
Q Consensus 268 ~i~~~ 272 (274)
+|++|
T Consensus 242 t~~~~ 246 (247)
T 3s4y_A 242 TMAIK 246 (247)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99997
No 2
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=100.00 E-value=1.2e-57 Score=404.22 Aligned_cols=210 Identities=18% Similarity=0.207 Sum_probs=192.5
Q ss_pred cEEEEEeCCCCCCC--chHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhc
Q 047888 41 TYALVVLNQRLPRF--APLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASL 118 (274)
Q Consensus 41 ~~avIvlng~~~~~--~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~ 118 (274)
++++||+|||...+ +..++++++++|||||||++|++ .++.||+|||||||++++++++|+++
T Consensus 1 Mkv~Iv~gG~~~~~~~l~~~~~~~~~~i~~Dgga~~l~~---------------~g~~Pd~ivGD~DSi~~~~~~~~~~~ 65 (223)
T 3k94_A 1 MIIHIVGGGPRELLPDLRFYDGEDVCWVGVDRGTMTLLE---------------AGFRPVRAFGDFDSLPAEDVVKLQQA 65 (223)
T ss_dssp CEEEEECSSCGGGSCCGGGGCCTTEEEEEETTHHHHHHH---------------HTCCCSEEESCGGGSCHHHHHHHHHH
T ss_pred CEEEEEeCCChHHhHHHHHhhhcCCEEEEECHHHHHHHH---------------cCCCCCEEEeCcccCCHHHHHHHHhc
Confidence 47899999986543 23456778999999999999999 99999999999999999999999999
Q ss_pred CCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCeEEEEeCCeEEEEecCC
Q 047888 119 GTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKT 198 (274)
Q Consensus 119 g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~i~li~~~~~i~ll~~g 198 (274)
|++++++|+|||+||+||||+++.++++. +|+++||+|||+||+|+||++|++..+.+++++++++.++++++|
T Consensus 66 ~~~i~~~p~eKD~TD~e~Al~~a~~~g~~------~I~i~Ga~GGR~DH~lani~lL~~~~~~~i~lid~~~~i~~l~~g 139 (223)
T 3k94_A 66 FPDLDVWPAEKDKTDMEIALDWAVEQTAR------CIRLFGATGGRLDHLFGNVELLLKYADRPIEIVDRQNVLTVHLPG 139 (223)
T ss_dssp CTTCCEECCBTTBCHHHHHHHHHHTTCCS------EEEEESCSSSSHHHHHHHHHHHHHTTTSCEEEEETTEEEEEECSE
T ss_pred CCeEEECCCcCCCCHHHHHHHHHHHcCCC------EEEEEcCCCCchhHHHHHHHHHHhccCCeEEEEcCCeEEEEEeCC
Confidence 99999999999999999999999999887 999999999999999999999998666899999999999999876
Q ss_pred ceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEEEccC
Q 047888 199 HRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKNQ 274 (274)
Q Consensus 199 ~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~~~~~ 274 (274)
+|++. ....+++|||||++++++++|++||||||+++.+.+++++|+||++.+++++|++++|.+|++++||.
T Consensus 140 -~~~i~--~~~~~~~vSlipl~~~~~~lt~~Glky~L~~~~l~~~~~~~~SNe~~~~~~~I~~~~G~llvi~s~d~ 212 (223)
T 3k94_A 140 -TYTVM--YDARYCYVSYIPVSETVAEFTLTGFKYPLTNCHISRGSTLCISNELIQSSGTFSFSEGILMMIRSSDS 212 (223)
T ss_dssp -EEEEE--CCTTCCEEEEEECSSEEEEEEEESBSSCCCSEEEETTTSCCBCCCBCSSEEEEEESBSCEEEEEECCT
T ss_pred -cEEEE--ECCCCCEEEEEECCCceeEEEEeccEEECCCCeecCCCceEEeeEEECCeEEEEEcCCEEEEEEECcc
Confidence 67764 33458999999999888899999999999999999999999999999999999999999999999974
No 3
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.1e-57 Score=402.53 Aligned_cols=210 Identities=23% Similarity=0.292 Sum_probs=191.9
Q ss_pred CcEEEEEeCCCCCCC--chHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHh
Q 047888 40 LTYALVVLNQRLPRF--APLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYAS 117 (274)
Q Consensus 40 ~~~avIvlng~~~~~--~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~ 117 (274)
|++++||+|||...+ +..++++++++|||||||++|++ .++.||+|||||||++++++++|++
T Consensus 1 M~~~~Iv~gG~~~~~~~l~~~~~~~~~~i~~DgGa~~l~~---------------~g~~Pd~ivGDfDSi~~~~~~~~~~ 65 (222)
T 3lm8_A 1 MKTINIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLD---------------AGIIPVEAFGDFDSITEQERRRIEK 65 (222)
T ss_dssp -CEEEEECSSCGGGSCCSGGGCCTTEEEEEETHHHHHHHH---------------HTCCCSEEESCSTTSCHHHHHHHHH
T ss_pred CcEEEEEECCchHHHHHHHHHhhcCCEEEEECHHHHHHHH---------------cCCCCcEEEeCcccCCHHHHHHHHh
Confidence 357999999987543 23557778999999999999999 9999999999999999999999999
Q ss_pred cCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcC--CCeEEEEeCCeEEEEe
Q 047888 118 LGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFS--DIRIILLSDDCHIQLL 195 (274)
Q Consensus 118 ~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~--~~~i~li~~~~~i~ll 195 (274)
+|++++++|+|||+||+||||+++.++++. +|+++||+|||+||+|+||++|+++. +.++++++++++++++
T Consensus 66 ~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~------~I~i~Ga~GgR~DH~lani~ll~~~~~~~~~i~lid~~~~i~~l 139 (222)
T 3lm8_A 66 AAPALHVYQAEKDQTDLDLALDWALEKQPD------IIQIFGITGGRADHFLGNIQLLYKGVKTNIKIRLIDKQNHIQMF 139 (222)
T ss_dssp HCTTCEEECCCSSSCHHHHHHHHHHHHCCS------EEEEESCCCSCHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEE
T ss_pred cCCeEEEeCCCCCCCHHHHHHHHHHHcCCC------EEEEEcCCCCchhHHHHHHHHHHHHHhcCCcEEEEeCCeEEEEE
Confidence 999999999999999999999999999887 99999999999999999999999852 4799999999999999
Q ss_pred cCCceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEEEcc
Q 047888 196 PKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKN 273 (274)
Q Consensus 196 ~~g~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~~~~ 273 (274)
++| +|++. ....+++|||||++++++++|++||||||+++.+.+++++|+||++.+++++|++++|.++++++||
T Consensus 140 ~~g-~~~i~--~~~~~~~vSlipl~~~~~~lt~~Glky~L~~~~l~~~~~~~~SNe~~~~~~~I~~~~G~llvi~s~d 214 (222)
T 3lm8_A 140 PPG-EYDIE--KDENKRYISFIPFSEDIHELTLTGFKYPLNNCHITLGSTLCISNELIHSRGTFSFVKGILIMIRSTD 214 (222)
T ss_dssp CSE-EEEEE--CCSSCCEEEEEECSSCEEEEEEESBSSCEEEEEECTTCCTTSSBCBSSSEEEEEESBSCEEEEEECC
T ss_pred cCC-cEEEE--ECCCCCEEEEEECCCceeeEEEeCcEEECCCCeecCCCeeEEeeEEECCeEEEEEccCEEEEEEecc
Confidence 876 67764 3345799999999988889999999999999999999999999999999999999999999999987
No 4
>2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin pyrophosphokinase, structural GENO profun, bacterial targets at IGS-CNRS, france, BIGS; HET: VNP; 1.96A {Candida albicans} PDB: 2hh9_A*
Probab=100.00 E-value=3.7e-57 Score=423.77 Aligned_cols=249 Identities=30% Similarity=0.489 Sum_probs=201.3
Q ss_pred hhhccccccCCCCCCCCCCCcEEEEEeCCCCCCCchHHhccCCEEEEEechHHHHHhhcCCCCC-CCCcccccCCccccE
Q 047888 21 MTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFP-HEDPSDIRRRYKPDL 99 (274)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~avIvlng~~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~-~~~~~~~~~~i~Pd~ 99 (274)
.|+|..+|.+.... ...++|+||+||+++.++..+|++++++||||||||+|++.+++... .++++..+.++.||+
T Consensus 46 ~~~p~~~~~~~~~~---~~~~~alIvlng~~~~~~~~l~~~a~~~I~aDGGAn~L~~~~~~~~~~~~~~~g~~~~~~Pd~ 122 (348)
T 2g9z_A 46 HIQPFVYLESTATT---QTNHNVLLILNQKITIDLISLWKKCEIIVCADGGANSLYEYFNDNNHHHHHENLQRSDYIPDY 122 (348)
T ss_dssp EECTTTTC------------CEEEEECSSCCCSCHHHHHTTCSEEEEETTHHHHHHHHTC----------CCGGGCCCSE
T ss_pred EeccHHHcCccCCC---CCCCEEEEEECCccHHHHHHHHhcCCEEEEEccHHHHHHHhhhhhccccccccCCcccccccE
Confidence 69999999863211 12479999999999855568899999999999999999995442111 111111223499999
Q ss_pred EeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCC------------------------------c
Q 047888 100 IKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNL------------------------------E 149 (274)
Q Consensus 100 iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~------------------------------~ 149 (274)
|||||||++++++++|+++|+.++ ++||||+|||+|||+++.++++.. .
T Consensus 123 IvGDfDSi~~e~~~~y~~~g~~i~-~~~dQD~TD~ekAL~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 201 (348)
T 2g9z_A 123 IVGDFDSISPDVKTYYESHGSKII-RQSSQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEVDGLAKLWNGLNNSSDVVV 201 (348)
T ss_dssp EEECCSSSCHHHHHHHHTTTCEEE-ECCCSSSCHHHHHHHHHHHHHHHTTTCTTTTTTSCTTTHHHHHHHHHHHTTCCCC
T ss_pred EEccCcCCCHHHHHHHHhcCceEE-cCCCcCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999875 689999999999999999875210 0
Q ss_pred CCCcEEEEEecCCCChhhHHHHHHHHHhc----CCCeEEEEeCCeEEEEecCCceeEEEEccC-C--------CCCEEEE
Q 047888 150 KSNLRILVAGALGGRFDHEAGNINVLYRF----SDIRIILLSDDCHIQLLPKTHRHDIYIQSS-V--------EGPHCGL 216 (274)
Q Consensus 150 ~~~~~I~i~Ga~GGR~DH~lani~~L~~~----~~~~i~li~~~~~i~ll~~g~~~~i~~~~~-~--------~g~~~Sl 216 (274)
....+|+++||+|||+||+|+||++|+++ .+.+++++++++++|++++| .|.+..+.. . .+++|||
T Consensus 202 ~~~~~I~ilGalGGR~DHtlanI~~L~~~~~~~~~~~i~lid~~n~i~ll~~G-~~~i~~~~~~~~~~~~~~~~g~~~SL 280 (348)
T 2g9z_A 202 DIDITIYVLNAIGGRFDQTVQSINQLYIMNEDYPKVTVFFITTNDIIFLLKKG-VNYISYKNRLMFHKDNGSSPTPTCGL 280 (348)
T ss_dssp CCCEEEEEESSSSSSHHHHHHHHHHHHHHHHHCTTEEEEEECSSEEEEEECSE-EEEEECSCGGGTBCCCSSCCSCEEEE
T ss_pred cCCcEEEEEecCCCchhHHHHHHHHHHHhhhhcCCceEEEEcCCeEEEEECCC-ceEEecccccccccccccCCCCEEEE
Confidence 12458999999999999999999999985 35689999999999999887 677765322 1 2899999
Q ss_pred EeecCCc-ccEEEccceeecCCcccccCCceeeeeeEECce-EEEEEeCCEEEEEEEccC
Q 047888 217 IPIGMPS-GSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEK-VTVRSDSDLLWTISIKNQ 274 (274)
Q Consensus 217 iPl~~~~-~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~-v~I~~~~g~l~~i~~~~~ 274 (274)
||+++++ +.+|++||||||+++.+.+++.+|+||++.+++ |+|++++|+||+|+++++
T Consensus 281 iPl~~~~~~~ltt~GLKy~L~~~~l~~g~~vstSNe~~~~~~v~I~~~~g~L~~I~~~~~ 340 (348)
T 2g9z_A 281 LPLSNKTPIILNSYGLKYDMRNWKTEMLGQVSSSNRISGETGFIVECSDDIVMNIEIDVQ 340 (348)
T ss_dssp ECCSSSCCEEEEEESBSEEEESEEECTTSCCEEEEEBCBSSEEEEEESSCEEEEEECBC-
T ss_pred EEcCCCccceEEEeCcEEECCCceecCCCceeEeeEEeCCccEEEEECCCEEEEEEEecC
Confidence 9999887 799999999999999999999999999999988 999999999999999874
No 5
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=100.00 E-value=2.8e-57 Score=401.72 Aligned_cols=210 Identities=18% Similarity=0.218 Sum_probs=190.0
Q ss_pred CcEEEEEeCCCCCCCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcC
Q 047888 40 LTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLG 119 (274)
Q Consensus 40 ~~~avIvlng~~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g 119 (274)
|++|+|++||+++.+...++++++++|||||||++|++ .++.||+|||||||++++++++|+++|
T Consensus 1 M~~~~I~~gG~~~~~~~~~~~~~~~~I~aDgGa~~l~~---------------~g~~Pd~ivGDfDSi~~~~~~~~~~~~ 65 (222)
T 3mel_A 1 MSRVLLVAGGNPSDWPTIEPATYDYFVGIDRGCLHLLE---------------ADLPLQLAVGDFDSLSREEYHFVQETT 65 (222)
T ss_dssp -CEEEEECSSCGGGCCCCCGGGCSCEEEETTHHHHHHT---------------TTCCCCEEEECCTTSCTTHHHHHHHHC
T ss_pred CcEEEEEECCCCccchhHHhhcCCEEEEEcHHHHHHHH---------------CCCCCCEEEeCcccCCHHHHHHHHhcC
Confidence 35799999999976543345678999999999999999 999999999999999999999999999
Q ss_pred CeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHh--cC--CCeEEEEeCCeEEEEe
Q 047888 120 TKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYR--FS--DIRIILLSDDCHIQLL 195 (274)
Q Consensus 120 ~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~--~~--~~~i~li~~~~~i~ll 195 (274)
++++++|||||+||+||||+++.++++.. +|+++||+|||+||+|+||++|++ +. +.+++++++++.++++
T Consensus 66 ~~~~~~~~eKD~TD~e~Al~~~~~~~~~~-----~I~i~Ga~GgRlDH~lani~lL~~~~~~~~~~~i~lid~~n~i~~l 140 (222)
T 3mel_A 66 ETLIQAPAEKDDTDTQLALQEALQRFPQA-----EMTIIGATGGRIDHLLANLWLPFEPRFQGVLRQIRLCDRQNSIQYY 140 (222)
T ss_dssp SSEEECCSSCSSCHHHHHHHHHHHHCTTS-----EEEEECCCSSCHHHHHHHHTGGGSHHHHTTGGGEEEECSSEEEEEE
T ss_pred CcEEECCccCCCCHHHHHHHHHHHhCCCc-----eEEEEccCCCCHHHHHHHHHHHHhhHHhccCceEEEEeCCcEEEEE
Confidence 99999999999999999999999988742 799999999999999999999987 44 3789999999999999
Q ss_pred cCCceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEEEccC
Q 047888 196 PKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKNQ 274 (274)
Q Consensus 196 ~~g~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~~~~~ 274 (274)
++| +|++.. ...+++|||||++ +++++|++||||||+++.+.++.+++ |||+.+++++|++++|.+++++.|||
T Consensus 141 ~~g-~~~i~~--~~~~~~vSlipl~-~~~~lt~~Glky~L~~~~l~~g~~~~-SNe~~~~~~~I~~~~G~llvi~s~d~ 214 (222)
T 3mel_A 141 APG-SYIVPK--EPDKEYLAYCCLT-PVENLTLRRSKYLLTNQDVPYPTSYA-SNEFIEEAAAFSFDAGMIAVIQSKDK 214 (222)
T ss_dssp CSS-EEEEEC--CTTCCEEEEEESS-CEEEEEEESBSSCEEEEEECSCEEEE-EECBSSSEEEEECSBSCEEEEEECCC
T ss_pred eCC-cEEEEe--cCCCcEEEEEECc-ccceEEEeccEEECCCCeeeCCCCCE-eEEEECCeEEEEEeCCEEEEEEEccc
Confidence 887 677753 2335799999998 78899999999999999999999888 99999999999999999999999986
No 6
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=100.00 E-value=1.3e-55 Score=390.02 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=181.9
Q ss_pred CcEEEEEeCCCCCCCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcC
Q 047888 40 LTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLG 119 (274)
Q Consensus 40 ~~~avIvlng~~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g 119 (274)
|++++|++||+++.+. ..++++|||||||++|++ .++.||+|||||||++++++++|+++|
T Consensus 1 M~~~~I~~gG~~~~~~----~~~~~~i~~DgGa~~l~~---------------~g~~Pd~ivGDfDSi~~~~~~~~~~~~ 61 (218)
T 3ihk_A 1 MTKVALFSGGDLTYFT----RDFDYFVGIDKGSSFLLK---------------NQLPLDLAIGDFDSVSAEEFKQIKAKA 61 (218)
T ss_dssp -CEEEEECSSCCSCCC----CCCSEEEEETHHHHHHHH---------------TTCCCSEEEECCTTSCHHHHHHHHTTC
T ss_pred CcEEEEEECCCCccCc----ccCCEEEEEcHHHHHHHH---------------cCCCCCEEEeCcccCCHHHHHHHHhcC
Confidence 3579999999998753 246999999999999999 999999999999999999999999999
Q ss_pred CeEEEcCCCCChhHHHHHHHHHHHh-CCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcC----CCeEEEEeCCeEEEE
Q 047888 120 TKVVDESHDQDTTDLHKCVAYIRDC-TPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFS----DIRIILLSDDCHIQL 194 (274)
Q Consensus 120 ~~ii~~~~dKD~TD~ekAl~~~~~~-~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~----~~~i~li~~~~~i~l 194 (274)
++++++|||||+||+||||+++.++ ++. +|+++||+|||+||+|+||++|+++. ..+++++++++.+++
T Consensus 62 ~~i~~~~~eKD~TD~e~Al~~a~~~~~~~------~I~i~Ga~GGR~DH~lani~lL~~~~~~~~~~~i~lid~~n~i~~ 135 (218)
T 3ihk_A 62 KKLVMAPAEKNDTDTELALKTIFDCFGRV------EIIVFGAFGGRIDHMLSNIFLPSDPDLAPFMRCFKLRDEQNLVEF 135 (218)
T ss_dssp SSEEECCSSCSSCHHHHHHHHHHHHTSSC------EEEEESCSSSCHHHHHHHHTGGGSTTTGGGTTSEEEEETTEEEEE
T ss_pred CeEEECCCCCCCCHHHHHHHHHHHhCCCC------EEEEECCCCCchhhHHHHHHHHHhhhhhccCceEEEEcCCcEEEE
Confidence 9999999999999999999999998 566 89999999999999999999998752 368999999999999
Q ss_pred ecCCceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEEEccC
Q 047888 195 LPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKNQ 274 (274)
Q Consensus 195 l~~g~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~~~~~ 274 (274)
+++| +|++.. ....++|||||+++ +++|++||||||+++.+.+ +..++||++.+++++|++++|.+|+|++||+
T Consensus 136 l~~g-~~~i~~--~~~~~~vSlipl~~--~~lt~~Glky~L~~~~l~~-~~~~~SNe~~~~~~~I~~~~G~llvi~s~D~ 209 (218)
T 3ihk_A 136 FPAG-QHQIEQ--ATDMVYISFMAANG--AHLSIQDAKYELTEENYFQ-KKIYSSNEFKDKPICFSVASGYVVVIQTKDR 209 (218)
T ss_dssp EEEE-EEEECC--CSSCCEEEEEESSC--CCEEEESSSSCBCTTTCCC-CSEEEEECCCSSCEEEEEEEEEEEEEEECC-
T ss_pred EcCC-CEEEEe--cCCCcEEEEEEccC--CcEEEeccEEECCCccccC-CCCcEeeEEECCeEEEEEeCCEEEEEEEccc
Confidence 8776 677642 22236999999985 7899999999999999964 5788999999999999999999999999984
No 7
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=100.00 E-value=3.5e-56 Score=392.17 Aligned_cols=207 Identities=24% Similarity=0.328 Sum_probs=170.0
Q ss_pred cEEEEEeCCC-CCCCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcC
Q 047888 41 TYALVVLNQR-LPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLG 119 (274)
Q Consensus 41 ~~avIvlng~-~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g 119 (274)
++++|++||+ +|..... .++++++|||||||++|++ .++.||+|||||||++++++++|++++
T Consensus 1 Mki~i~~gg~~~p~~~~~-~~~~~~~i~~DgGa~~l~~---------------~g~~Pd~ivGD~DSi~~~~~~~~~~~~ 64 (212)
T 3l8m_A 1 MKANLLCGNRNLPKHILV-EHKHEHWIGIDRGTLILLE---------------SGITPQFAVGDFDSISDSERNFIQQQI 64 (212)
T ss_dssp CEEEEECCSSSCCTTHHH-HTTTSEEEEETHHHHHHHH---------------TTCCCSEEESCCCCSCHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCchhhhh-cccCCEEEEECHHHHHHHH---------------CCCCccEEEeCcccCCHHHHHHHhcCC
Confidence 4588999985 4543222 3467999999999999999 999999999999999999999999999
Q ss_pred CeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhc----CCCeEEEEeCCeEEEEe
Q 047888 120 TKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRF----SDIRIILLSDDCHIQLL 195 (274)
Q Consensus 120 ~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~----~~~~i~li~~~~~i~ll 195 (274)
+++++|+|||+||+||||+++.++++. +|+++||+|||+||+|+||++|+++ .+.+++++++++.++++
T Consensus 65 -~i~~~p~eKD~TD~e~Al~~a~~~~~~------~I~i~Ga~GgR~DH~lani~ll~~~~~~~~~~~i~lid~~~~i~~l 137 (212)
T 3l8m_A 65 -EINPYNSEKDDTDLALGIDQAVKRGYR------NIDVYGATGGRLDHFMGALQILEKPEYAKMNINIKLIDDTNEIQFI 137 (212)
T ss_dssp -BCCCCC---CBCHHHHHHHHHHHTTCC------EEEEESCSSSCHHHHHHHHHHHTCHHHHTTTCEEEEECSSEEEEEE
T ss_pred -cEEEECCcCCCCHHHHHHHHHHHCCCC------EEEEEcCCCCchhHHHHHHHHHHhhhhhccCceEEEEeCCeEEEEE
Confidence 888899999999999999999999887 9999999999999999999999874 24799999999999999
Q ss_pred cCCceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEEEccC
Q 047888 196 PKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKNQ 274 (274)
Q Consensus 196 ~~g~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~~~~~ 274 (274)
++| +|++.. ...+++|||||++++++ +|++||||||+++.+.+++++|+||++.+++++|++++|.++++++||.
T Consensus 138 ~~g-~~~i~~--~~~~~~vSl~pl~~~~~-lt~~Glky~L~~~~l~~~~~~~~SNe~~~~~~~I~~~~G~llvi~s~D~ 212 (212)
T 3l8m_A 138 QKG-QFNVTY--SEQFPYISFIPVIYPTV-ISLKGFKYNLQNETLKLGSTLTISNELSQSCGNIEIIEGSVLMIRSKDE 212 (212)
T ss_dssp CSE-EECC-------CCEEEEEECC-CEE-EESSSSCCSSEEC-------CCTTBCC---CCCEEEEESCEEEEEECCC
T ss_pred CCC-CEEEEe--CCCCcEEEEEECCCCeE-EEEeccEEECCCCeecCCCeeEEeeEEECCeEEEEEcCCEEEEEEEcCC
Confidence 876 666642 22348999999998777 9999999999999999999999999999999999999999999999973
No 8
>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound active site, alpha-beta- alpha, beta sandwich, transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae} SCOP: b.82.6.1 c.100.1.1
Probab=100.00 E-value=1.8e-55 Score=408.96 Aligned_cols=229 Identities=30% Similarity=0.533 Sum_probs=191.0
Q ss_pred CCCCcEEEEEeCCCCCC---CchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHH
Q 047888 37 RPSLTYALVVLNQRLPR---FAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMD 113 (274)
Q Consensus 37 ~~~~~~avIvlng~~~~---~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~ 113 (274)
+...++|+||+||+++. ++..+|++++++|||||||++|++.++. . ...+..+.||+|||||||+++++++
T Consensus 34 ~~~~~~~lIvlng~~~~~~~~~~~~~~~a~~~I~aDGGa~~l~~~~~~----~--g~~~~~~~Pd~IvGDfDSi~~e~~~ 107 (319)
T 1ig0_A 34 NEDENSTLLILNQKIDIPRPLFYKIWKLHDLKVCADGAANRLYDYLDD----D--ETLRIKYLPNYIIGDLDSLSEKVYK 107 (319)
T ss_dssp CTTSEEEEEECSSCCCSCHHHHHHHHHHCSEEEEETTHHHHHHHHSCS----C--HHHHTTSCCSEEEECCTTSCHHHHH
T ss_pred CCCCCEEEEEECCCCcccHHHHHHHHhcCCEEEEEccHHHHHHHhhhc----c--cccccccccCEEEcCCcCCCHHHHH
Confidence 34568899999999952 4567898899999999999999994321 0 0001129999999999999999999
Q ss_pred HHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCC--------------------------------------CcCCCcEE
Q 047888 114 FYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPN--------------------------------------LEKSNLRI 155 (274)
Q Consensus 114 ~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~--------------------------------------~~~~~~~I 155 (274)
+|+++|+.++ ++||||+|||+|||+++.++... ......+|
T Consensus 108 ~y~~~g~~i~-~~~dqD~TD~ekAl~~i~~~~~~~~~~~~~~~~~~tds~~~~~~e~~~~~a~~~~~~~~~~~~~~~~~I 186 (319)
T 1ig0_A 108 YYRKNKVTII-KQTTQYSTDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLVFSKVTPISL 186 (319)
T ss_dssp HHHHTTCEEE-ECCCSSSCHHHHHHHHHHHHHHCHHHHHHHTCSSCTTTGGGCCTTTHHHHHHHHHHTTCCGGGSCCEEE
T ss_pred HHHhcCceEE-eCCCCCCChHHHHHHHHHHhcccccccccccccccccccccccchhhhhhhhhccccccccccCCCcEE
Confidence 9999998776 67999999999999999642000 00123489
Q ss_pred EEEecCCCChhhHHHHHHHHHhcC----CCeEEEEeCCeEEEEecCCceeEEEEccC--C-CCCEEEEEeecCCcccEEE
Q 047888 156 LVAGALGGRFDHEAGNINVLYRFS----DIRIILLSDDCHIQLLPKTHRHDIYIQSS--V-EGPHCGLIPIGMPSGSTST 228 (274)
Q Consensus 156 ~i~Ga~GGR~DH~lani~~L~~~~----~~~i~li~~~~~i~ll~~g~~~~i~~~~~--~-~g~~~SliPl~~~~~~vt~ 228 (274)
+++||+|||+||+|+||++|+++. +.+++++++++++|++++| .|.+..+.. . .+++|||||++++++++|+
T Consensus 187 ~ilGalGGR~DH~lanI~~L~~~~~~~~~~~i~lid~~n~i~ll~~G-~~~i~~~~~~~~~~g~~~SliPl~~~~~~ltt 265 (319)
T 1ig0_A 187 LALGGIGGRFDQTVHSITQLYTLSENASYFKLCYMTPTDLIFLIKKN-GTLIEYDPQFRNTCIGNCGLLPIGEATLVKET 265 (319)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHHHHHCTTEEEEEECSSEEEEEECSS-CEEEECCHHHHHHHEEEEEEECTTSCEEEEEE
T ss_pred EEEecCCCchhHHHHHHHHHHHhhhhcCCceEEEEcCCEEEEEECCC-cEEEecccccccCCCCEEEEEECCCCcceEEE
Confidence 999999999999999999999863 4689999999999999887 677764211 1 3899999999988889999
Q ss_pred ccceeecCCccccc-CCceeeeeeEECce-EEEEEeCCEEEEEEEcc
Q 047888 229 TGLQWDLDNTETRF-GGLVSTSNIVKGEK-VTVRSDSDLLWTISIKN 273 (274)
Q Consensus 229 ~Glky~L~~~~l~~-~~~~s~SN~~~~~~-v~I~~~~g~l~~i~~~~ 273 (274)
+||||||+++.+.+ ++.+|+||++.+++ ++|++++|+||+|++|+
T Consensus 266 ~GlKy~L~~~~l~~~g~~~stSNe~~~~~~v~I~~~~g~L~~i~~~~ 312 (319)
T 1ig0_A 266 RGLKWDVKNWPTSVVTGRVSSSNRFVGDNCCFIDTKDDIILNVEIFV 312 (319)
T ss_dssp ESBSEEEEEEEEBTTTTBCEEEEEBCBSSEEEEEESSCEEEEEEECH
T ss_pred eCcEEECCCceeccCCCcceEeeEEeCCccEEEEECCCEEEEEEEcc
Confidence 99999999999999 88999999999888 99999999999999986
No 9
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
Probab=100.00 E-value=1.3e-55 Score=392.13 Aligned_cols=208 Identities=19% Similarity=0.217 Sum_probs=177.7
Q ss_pred cEEEEEeCCCCCCCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCC
Q 047888 41 TYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGT 120 (274)
Q Consensus 41 ~~avIvlng~~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~ 120 (274)
++++||+||+++++...+++.++++|||||||++|++ .|+.||+|||||||++++++++|+++|+
T Consensus 3 ~~~~Iv~gG~~~~~~~~~~~~~~~~I~aDgGa~~l~~---------------~g~~Pd~ivGDfDSi~~e~~~~~~~~~~ 67 (227)
T 3cq9_A 3 TIVNLLVGGPTANYPADLTTIPGPWVGADRGALRLVK---------------RGIQPVMVVGDFDSIDAAELQTVKDALV 67 (227)
T ss_dssp CEEEEECSSCGGGCSSCGGGSCSCEEEETHHHHHHHH---------------TTCCCSEEESCC---------CHHHHHH
T ss_pred CEEEEEECCcchHHHHHHhhcCCEEEEEcHHHHHHHH---------------cCCCCCEEEeCCcCCCHHHHHHHHhcCc
Confidence 5699999999754433344667899999999999999 9999999999999999999999999999
Q ss_pred eEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcC--CC--eEEEEeCCeEEEEec
Q 047888 121 KVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFS--DI--RIILLSDDCHIQLLP 196 (274)
Q Consensus 121 ~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~--~~--~i~li~~~~~i~ll~ 196 (274)
+++.+||+||+||++|||+++.++++.. +|+++||+|||+||+|+||++|+++. +. +++++++++.+++++
T Consensus 68 ~~~~~~~~KD~TD~e~Al~~a~~~~~~~-----~I~i~Ga~GgR~DH~laNi~lL~~~~~~~~~~~i~lid~~n~i~~l~ 142 (227)
T 3cq9_A 68 GAIVVKPDQDHTDTQLAIKSIFEQLQPD-----EVHLYGATGGRLDHLLANMWLVLDPVFRQWAPQIKLIDKQNSVRFFL 142 (227)
T ss_dssp TSEEECCCSSSCHHHHHHHHHHHHTCCS-----EEEEESCSSSCHHHHHHHHSGGGSHHHHTTGGGEEEECSSEEEEEEC
T ss_pred eEEECCCCCCCCHHHHHHHHHHHhCCCc-----eEEEEcCCCCchhHHHHHHHHHHHHHhcCCCceEEEEeCCcEEEEEc
Confidence 8988999999999999999999988753 89999999999999999999998763 45 899999999999998
Q ss_pred CCceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEEEccC
Q 047888 197 KTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKNQ 274 (274)
Q Consensus 197 ~g~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~~~~~ 274 (274)
+| +|++.. ...+++|||||+++ + ++|++||||||+++.+.+++++| ||++.+++++|++++|.+|++++|++
T Consensus 143 ~g-~~~i~~--~~~~~~vSlipl~~-v-~lt~~Glky~L~~~~l~~g~~~~-SNe~~~~~~~I~~~~G~llvi~s~d~ 214 (227)
T 3cq9_A 143 PG-DYQITK--EADKRYLAFVPLMP-M-HLTLPDEKYQLDAAYNAYPISWA-SNEFSGNTGHFSFDAGVLAVIQSRDD 214 (227)
T ss_dssp SE-EEEEEC--CTTCCEEEEEESSC-E-EEEESSBSSCEEEEEESSCCCEE-EECBSSSEEEEEECSSCEEEEEECC-
T ss_pred CC-CEEEee--CCCCCEEEEEECCC-C-eEEEeccEEECCCceeeCCCceE-ceeEECCeEEEEEcCCEEEEEEECCC
Confidence 87 777753 22369999999997 7 89999999999999999999999 99999999999999999999999874
No 10
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-51 Score=364.87 Aligned_cols=198 Identities=24% Similarity=0.340 Sum_probs=172.3
Q ss_pred CCCcEEEEEeCCCCCCC--chHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHH
Q 047888 38 PSLTYALVVLNQRLPRF--APLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFY 115 (274)
Q Consensus 38 ~~~~~avIvlng~~~~~--~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~ 115 (274)
...++++||+||+.+.. +..+|++++++|||||||++|++ .|+.||+|||||||++++++++|
T Consensus 29 ~~~~~v~Iv~~G~~~~~~~~~~~~~~~~~iI~aDgGa~~L~~---------------~gi~Pd~ivGDfDSi~~e~~~~~ 93 (231)
T 2omk_A 29 HYIPQAIILANGEYPAHELPLRLLAEAQFVVCCXXAANEYIS---------------RGHTPDVIIGDGDSLLPEYKKRF 93 (231)
T ss_dssp CCCCSEEEECSSSCCCSHHHHHHHHHCSCEEEC--CHHHHHH---------------TTCCCSEEESCGGGSCHHHHHHH
T ss_pred CCCCEEEEEECCCCchhHHHHHHHhcCCEEEEEhHHHHHHHH---------------cCCCCCEEEeCCcCCCHHHHHhc
Confidence 34577999999998743 24678888999999999999999 99999999999999999999999
Q ss_pred HhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCC--CeEEEEeCCeEEE
Q 047888 116 ASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSD--IRIILLSDDCHIQ 193 (274)
Q Consensus 116 ~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~--~~i~li~~~~~i~ 193 (274)
+. + +.+||+||+||++||+.+|.+++++ +|+++|++|||+||+|+||++|+++.. .++++++++++++
T Consensus 94 ~~--~--i~~~~~kD~TD~e~Al~~a~~~g~~------~I~i~Ga~GgRlDH~laNi~lL~~~~~~~~~i~lid~~~~~~ 163 (231)
T 2omk_A 94 SS--I--ILQISDQETNDQTKAVHYLQSKGIR------KIAIVGATGKREDHTLGNISLLVEYMRSGMEVRTVTDYGTFI 163 (231)
T ss_dssp GG--G--EECCCSSCCCHHHHHHHHHHHTTCC------EEEEESCSSSCHHHHHHHHHHHHHHHHTTCEEEEECSSEEEE
T ss_pred CC--E--EEeCCCCCCCHHHHHHHHHHHcCCC------EEEEECccCCchhHHHHHHHHHHHHHhcCCeEEEEeCCEEEE
Confidence 84 2 4599999999999999999999888 999999999999999999999998763 6899999999988
Q ss_pred EecCCceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEEE
Q 047888 194 LLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISI 271 (274)
Q Consensus 194 ll~~g~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~~ 271 (274)
+++ | .+++. ...+++|||||++ ++++|++||||||++.. +..+|+|||+.+++++|+ .+|.+++++.
T Consensus 164 l~~-g-~~~i~---~~~g~~vSlipl~--~~~lt~~Glky~L~~~~---~~~~~~SNe~~~~~v~I~-~~G~llvi~s 230 (231)
T 2omk_A 164 PVS-D-TQSFA---SYPGQQVSIINFG--AKGLKAEGLFYPLSDFT---NWWQGTLNEAIADEFTIH-CTGEYLVFLA 230 (231)
T ss_dssp EEE-S-SEEEE---CCTTCEEEEEEEE--EEEEEEESBSSCCCCCS---SGGGGTTEEBCSSEEEEE-EEEEEEEEEE
T ss_pred EeC-C-CEEEe---cCCCCEEEEEEcc--cCcEEEeCcEEECCCCC---CCceEECeEEECCeEEEE-EcceEEEEEE
Confidence 884 4 46774 3468999999998 57899999999999844 568999999999999999 8888888864
No 11
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=83.64 E-value=8.7 Score=31.18 Aligned_cols=48 Identities=27% Similarity=0.235 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCeEEEcCCC----CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYASLGTKVVDESHD----QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~d----KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
.++++++++|.+++.+-+. -|+.|+..++..+...+.. +.-++++++|
T Consensus 17 ~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~-----d~GIliCGTG 68 (149)
T 3he8_A 17 EIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGEC-----DRGIVICGTG 68 (149)
T ss_dssp HHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSS-----SEEEEEESSS
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCC-----CEEEEEcCCc
Confidence 7788999999999988543 4788998888888776653 2677888887
No 12
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=82.09 E-value=6.4 Score=32.59 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=54.8
Q ss_pred CEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCC----CChhHHHHHH
Q 047888 63 KLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHD----QDTTDLHKCV 138 (274)
Q Consensus 63 ~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~d----KD~TD~ekAl 138 (274)
.+.|++|-+.-.+.+ .++++++++|.+++.+-+. -|+.|+.+++
T Consensus 23 kIaIgsDhaG~~lK~--------------------------------~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~v 70 (166)
T 3s5p_A 23 KVAFASDHGGRDLRM--------------------------------FLQQRASAHGYEVMDLGTESDASVDYPDFAKIG 70 (166)
T ss_dssp EEEEEECGGGHHHHH--------------------------------HHHHHHHHTTCEEEEEEC--------CHHHHHH
T ss_pred EEEEEECchHHHHHH--------------------------------HHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHH
Confidence 478899988887776 7788999999999887543 4688988888
Q ss_pred HHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCeEEEEeC
Q 047888 139 AYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSD 188 (274)
Q Consensus 139 ~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~i~li~~ 188 (274)
..+...+.. +.-++++++|= +---..-|+++++.-+..+
T Consensus 71 a~~V~~g~~-----d~GIliCGTGi------G~sIaANKv~GIRAAlc~d 109 (166)
T 3s5p_A 71 CEAVTSGRA-----DCCILVCGTGI------GISIAANKMKGIRCALCST 109 (166)
T ss_dssp HHHHHTTSC-----SEEEEEESSSH------HHHHHHHTSTTCCEEECSS
T ss_pred HHHHHcCCC-----cEEEEEcCCcH------HHHHHhhcCCCeEEEEeCC
Confidence 877776543 26778888871 1111223566655555543
No 13
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=82.06 E-value=10 Score=31.40 Aligned_cols=64 Identities=25% Similarity=0.254 Sum_probs=49.2
Q ss_pred CCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCC----CChhHHHHH
Q 047888 62 AKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHD----QDTTDLHKC 137 (274)
Q Consensus 62 ~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~d----KD~TD~ekA 137 (274)
-.+.|++|-+.-.+.+ .++++++++|.+++.+-+. -|+.|+..+
T Consensus 21 MkIaIgsDhaG~~lK~--------------------------------~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~ 68 (169)
T 3ph3_A 21 MKIGIGSDHGGYNLKR--------------------------------EIADFLKKRGYEVIDFGTHGNESVDYPDFGLK 68 (169)
T ss_dssp CEEEEEECGGGHHHHH--------------------------------HHHHHHHHTTCEEEECCCCSSSCCCHHHHHHH
T ss_pred CEEEEEeCchHHHHHH--------------------------------HHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHH
Confidence 3578888887777665 7788999999999988543 478899888
Q ss_pred HHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 138 VAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 138 l~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
+..+...+.. +.-++++++|
T Consensus 69 va~~V~~g~~-----d~GIliCGTG 88 (169)
T 3ph3_A 69 VAEAVKSGEC-----DRGIVICGTG 88 (169)
T ss_dssp HHHHHHTTSS-----SEEEEEESSS
T ss_pred HHHHHHcCCC-----CEEEEEcCCc
Confidence 8888776653 2677888887
No 14
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=81.50 E-value=10 Score=30.95 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=49.0
Q ss_pred CCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCC----CCChhHHHHH
Q 047888 62 AKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESH----DQDTTDLHKC 137 (274)
Q Consensus 62 ~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~----dKD~TD~ekA 137 (274)
..+.|++|-+.-.+.+ +++++++++|.+++.+-+ .-|+.|+..+
T Consensus 13 ~~i~igsDhaG~~lK~--------------------------------~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~ 60 (155)
T 1o1x_A 13 VKIAIASDHAAFELKE--------------------------------KVKNYLLGKGIEVEDHGTYSEESVDYPDYAKK 60 (155)
T ss_dssp CEEEEEECSTTHHHHH--------------------------------HHHHHHHHTTCEEEECCCCSSSCCCHHHHHHH
T ss_pred eeEEEeeCchHHHHHH--------------------------------HHHHHHHHCCCEEEEeCCCCCCCCChHHHHHH
Confidence 4567788877777765 778899999999998865 3378998888
Q ss_pred HHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 138 VAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 138 l~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
+..+...+.. +.-++++++|
T Consensus 61 va~~V~~g~~-----d~GIliCGTG 80 (155)
T 1o1x_A 61 VVQSILSNEA-----DFGILLCGTG 80 (155)
T ss_dssp HHHHHHTTSC-----SEEEEEESSS
T ss_pred HHHHHHcCCC-----ceEEEEcCCc
Confidence 8887776543 2778888888
No 15
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=79.37 E-value=11 Score=31.77 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=57.5
Q ss_pred CEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcC--CeEEEcCCC-----CChhHHH
Q 047888 63 KLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLG--TKVVDESHD-----QDTTDLH 135 (274)
Q Consensus 63 ~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g--~~ii~~~~d-----KD~TD~e 135 (274)
.+.|++|-+.-.|.+ .++++++++| .+++.+-+. -|+.|+.
T Consensus 31 kIaIgsDHaG~~LK~--------------------------------~i~~~L~~~G~g~eV~D~G~~s~~e~~DYPd~a 78 (184)
T 3sgw_A 31 RLAIACDDAGVSYKE--------------------------------ALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVA 78 (184)
T ss_dssp EEEEEECGGGHHHHH--------------------------------HHHHHHTTCTTEEEEEECSCCSTTCCCCHHHHH
T ss_pred EEEEEECchhHHHHH--------------------------------HHHHHHHhCCCCcEEEEcCCCCCCCCCCHHHHH
Confidence 478999998888876 6788999988 688888665 3788998
Q ss_pred HHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCeEEEEeC
Q 047888 136 KCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSD 188 (274)
Q Consensus 136 kAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~i~li~~ 188 (274)
.++..+...+.. +.=++++++|= +---..-|+++++.-+..+
T Consensus 79 ~~vA~~V~~ge~-----d~GIliCGTGi------G~sIaANKv~GIRAAlc~d 120 (184)
T 3sgw_A 79 IQAAQLIKDGKV-----DRALMICGTGL------GVAISANKVPGIRAVTAHD 120 (184)
T ss_dssp HHHHHHHHTTSC-----SEEEEEESSSH------HHHHHHHTSTTCCEEECCS
T ss_pred HHHHHHHHcCCC-----cEEEEEcCCcH------HHhhhhhcCCCeEEEEeCC
Confidence 888888776543 26778888871 1111223566665555443
No 16
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=77.75 E-value=16 Score=30.06 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCeEEEcCC-----CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYASLGTKVVDESH-----DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~~-----dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
+++++++++|.+++.+-+ .-|+.|+.+++..+...+.. +.-++++++|
T Consensus 20 ~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~-----d~GIliCGTG 72 (162)
T 2vvp_A 20 RIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPG-----SLGIVLGGSG 72 (162)
T ss_dssp HHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTT-----CEEEEEESSS
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCC-----ceEEEEeCCc
Confidence 488899999999998853 23789988888887776543 2778888888
No 17
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=76.09 E-value=12 Score=31.37 Aligned_cols=69 Identities=16% Similarity=0.037 Sum_probs=46.1
Q ss_pred HHHHHHHHh--cCCeEEEcCCC----CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCe
Q 047888 109 KEVMDFYAS--LGTKVVDESHD----QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIR 182 (274)
Q Consensus 109 ~~~~~~~~~--~g~~ii~~~~d----KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~ 182 (274)
+.+++++++ +|.+++.+-+. -|+.|+..++..+...+.. +.-++++++|= +---..-|+++++
T Consensus 38 ~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~-----d~GIliCGTGi------G~sIaANKv~GIR 106 (179)
T 3k7p_A 38 ENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEV-----EFGVLAAGSGI------GMSIAANKVPGVR 106 (179)
T ss_dssp HHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHTTSS-----SEEEEEESSSH------HHHHHHHTSTTCC
T ss_pred HHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCC-----CEEEEEccCcH------HHhhHhhcCCCeE
Confidence 377889999 99999988554 4788998888888776644 26778888871 1111223566655
Q ss_pred EEEEeC
Q 047888 183 IILLSD 188 (274)
Q Consensus 183 i~li~~ 188 (274)
.-+..+
T Consensus 107 AAlc~d 112 (179)
T 3k7p_A 107 AALCHD 112 (179)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 555543
No 18
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=74.33 E-value=17 Score=29.48 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=37.9
Q ss_pred CHHHHHHHHhcCCeEEEcCC----CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 108 RKEVMDFYASLGTKVVDESH----DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 108 ~~~~~~~~~~~g~~ii~~~~----dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
+++++++++++|.+++.+-+ .-|+.|+..++..+...+.. +.-++++++|
T Consensus 16 K~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~-----d~GIliCGTG 69 (149)
T 2vvr_A 16 KHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEV-----DGGILICGTG 69 (149)
T ss_dssp HHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSS-----SEEEEEESSS
T ss_pred HHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCC-----ceEEEEeCCc
Confidence 34688999999999998844 23788988888877776543 2778888888
No 19
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=74.07 E-value=3.7 Score=33.50 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-+.+.+++.|.++..+..-.|+-++..||+.+.+...+ -|++.|++| |.-|++-.-+.-+
T Consensus 25 ~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~D------lVittGG~s~g~~D~t~eal~~~ 91 (164)
T 3pzy_A 25 EDRCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVD------VILTSGGTGIAPTDSTPDQTVAV 91 (164)
T ss_dssp -CCHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCS------EEEEESCCSSSTTCCHHHHHHTT
T ss_pred eeHHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCC------EEEECCCCCCCCCccHHHHHHHH
Confidence 58877888888999887765433333336688888888764555 799999998 7999987666433
No 20
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=72.92 E-value=8.8 Score=31.14 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=45.9
Q ss_pred CEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCC-----CCChhHHHHH
Q 047888 63 KLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESH-----DQDTTDLHKC 137 (274)
Q Consensus 63 ~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~-----dKD~TD~ekA 137 (274)
.+.|++|.+.-.+.+ .++++++++|.+++.+-+ .-|+.|+..+
T Consensus 9 kI~igsDhaG~~lK~--------------------------------~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~ 56 (148)
T 4em8_A 9 RVFLSSDHAGVELRL--------------------------------FLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHD 56 (148)
T ss_dssp EEEEEECGGGHHHHH--------------------------------HHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHH
T ss_pred EEEEEECchhHHHHH--------------------------------HHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHH
Confidence 367888888777766 778899999999998854 2468898777
Q ss_pred HHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 138 VAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 138 l~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
+..+.. ..+ .-++++++|
T Consensus 57 va~~V~-~~d------~GIliCGTG 74 (148)
T 4em8_A 57 VVREVS-DTS------FGVLICGTG 74 (148)
T ss_dssp HHTTCB-TTB------EEEEEESSS
T ss_pred HHHHHH-HhC------eEEEEccCc
Confidence 766665 444 677888887
No 21
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=70.65 E-value=7 Score=31.80 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=48.7
Q ss_pred EeeC-----CCCCCHHHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHH-hCCCCcCCCcEEEEEecCC-CChhhHHHH
Q 047888 100 IKGD-----MDSIRKEVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRD-CTPNLEKSNLRILVAGALG-GRFDHEAGN 171 (274)
Q Consensus 100 iiGD-----fDSi~~~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~-~~~~~~~~~~~I~i~Ga~G-GR~DH~lan 171 (274)
.+|| .||-.+-+.+.+++.|.++..+..- .|.-++..||+.+.+ ...+ -|++.|++| |+-|++-.-
T Consensus 20 ~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~D------lVittGG~g~g~~D~t~ea 93 (169)
T 1y5e_A 20 TISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVD------VVLTNGGTGITKRDVTIEA 93 (169)
T ss_dssp EECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCS------EEEEECCCSSSTTCCHHHH
T ss_pred EEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCC------EEEEcCCCCCCCCCCcHHH
Confidence 3677 5776677788888889876544333 345677888888876 2445 799999998 699998665
Q ss_pred HH
Q 047888 172 IN 173 (274)
Q Consensus 172 i~ 173 (274)
+.
T Consensus 94 ~~ 95 (169)
T 1y5e_A 94 VS 95 (169)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 22
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=69.05 E-value=7.5 Score=32.48 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCCC-ChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHDQ-DTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINV 174 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~dK-D~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~ 174 (274)
.||-.+-+.+.+++.|.++..+..-. |.-++..+|+.+.+...+ -|++.|++| |.-|++-.-+.-
T Consensus 47 ~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~D------lVIttGGts~g~~D~t~eal~~ 113 (185)
T 3rfq_A 47 EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVD------LVVSVGGTGVTPRDVTPESTRE 113 (185)
T ss_dssp CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCS------EEEEESCCSSSTTCCHHHHHHT
T ss_pred cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCC------EEEECCCCCCCCcccHHHHHHH
Confidence 68878888889999997766543333 455678888887654555 799999998 799998766643
No 23
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=68.47 E-value=7.4 Score=31.81 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=49.2
Q ss_pred EeeC-----CCCCCHHHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHHh-CCCCcCCCcEEEEEecCC-CChhhHHHH
Q 047888 100 IKGD-----MDSIRKEVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRDC-TPNLEKSNLRILVAGALG-GRFDHEAGN 171 (274)
Q Consensus 100 iiGD-----fDSi~~~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~~-~~~~~~~~~~I~i~Ga~G-GR~DH~lan 171 (274)
.+|| .||-.+-+.+.+++.|.++..+..- .|.-++..||+.+.+. ..+ -|++.|++| |.-|++-.-
T Consensus 17 ~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~D------lVittGG~g~~~~D~t~ea 90 (172)
T 1mkz_A 17 TVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQ------VVLITGGTGLTEGDQAPEA 90 (172)
T ss_dssp EECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCC------EEEEESCCSSSTTCCHHHH
T ss_pred EEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCC------EEEeCCCCCCCCCCCHHHH
Confidence 3676 5666677788888889876544333 3556778899888775 455 799999999 689998655
Q ss_pred HH
Q 047888 172 IN 173 (274)
Q Consensus 172 i~ 173 (274)
+.
T Consensus 91 ~~ 92 (172)
T 1mkz_A 91 LL 92 (172)
T ss_dssp HG
T ss_pred HH
Confidence 53
No 24
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=66.50 E-value=10 Score=31.29 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCC-CCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESH-DQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVLY 176 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~-dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L~ 176 (274)
.||-.+-+.+.+++.|.++..+.. ..|.-++..||+.+.+. ++ -|++.|++| |.-|+|-.-+.-+.
T Consensus 21 ~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~-~D------lVittGG~g~~~~D~T~ea~a~~~ 88 (172)
T 3kbq_A 21 VNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEV-SD------LVVSSGGLGPTFDDMTVEGFAKCI 88 (172)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHH-CS------EEEEESCCSSSTTCCHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhc-CC------EEEEcCCCcCCcccchHHHHHHHc
Confidence 467666778888999987665432 34556788889888765 45 799999999 69999988876443
No 25
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=64.06 E-value=9.3 Score=30.97 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=45.6
Q ss_pred CCCCCHHHHHH----HHhcCCeEEEcCCC-CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHH
Q 047888 104 MDSIRKEVMDF----YASLGTKVVDESHD-QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINV 174 (274)
Q Consensus 104 fDSi~~~~~~~----~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~ 174 (274)
.||-.+-+.+. +++.|.++..+..- .|.-++..+|+.+.+...+ -|+..|++| |.-|+|-.-+.-
T Consensus 23 ~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~D------lVittGG~g~~~~D~t~ea~~~ 93 (167)
T 2g2c_A 23 ENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGAR------FIITAGGTGIRAKNQTPEATAS 93 (167)
T ss_dssp CCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCS------EEEEESCCSSSTTCCHHHHHHT
T ss_pred eccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCC------EEEECCCCCCCCCcChHHHHHH
Confidence 57777778888 88888766543333 3456778899888775566 899999999 799998776654
No 26
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=62.66 E-value=16 Score=29.95 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHH---hcCCeEEEcCCCCChhHHHHHHHHHHHh-CCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYA---SLGTKVVDESHDQDTTDLHKCVAYIRDC-TPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~---~~g~~ii~~~~dKD~TD~ekAl~~~~~~-~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-+.+.++ +.|.++....--.|.-++..+|+.+.+. ..+ -|++.|++| |.-|++-.-+.-+
T Consensus 23 ~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~D------lVittGG~g~g~~D~t~ea~~~~ 93 (178)
T 2pbq_A 23 EDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCS------LILTTGGTGPAPRDVTPEATEAV 93 (178)
T ss_dssp CCHHHHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCS------EEEEESCCSSSTTCCHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCC------EEEECCCCCCCCCCchHHHHHHH
Confidence 4666666777777 7887663222334556788899888763 455 799999998 6999987776544
No 27
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=62.36 E-value=18 Score=30.50 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=35.5
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCC-ChhHHHHHHHHHH
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQ-DTTDLHKCVAYIR 142 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dK-D~TD~ekAl~~~~ 142 (274)
..+.||+|++...+..++..+.+++.|++++.++... +..|....++.+-
T Consensus 56 ~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~~i~~lg 106 (256)
T 2r7a_A 56 LSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLPRVPATLEQMYANIRQLA 106 (256)
T ss_dssp HTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCSCCHHHHHHHHHHHH
T ss_pred HccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 3588999998765556778888999998887764333 5666666665543
No 28
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=62.30 E-value=18 Score=30.46 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=36.5
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHH
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIR 142 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~ 142 (274)
..+.||+|++.-..-.++..+.+++.|++++.++..++..|....++.+-
T Consensus 56 ~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg 105 (255)
T 3md9_A 56 LAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVA 105 (255)
T ss_dssp HTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHH
T ss_pred HccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 46889999998765556778889999999987754456666666665543
No 29
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=60.42 E-value=12 Score=30.23 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=49.3
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHHh-CCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRDC-TPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~~-~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-+.+.+++.|.++..+..- .|.-++..||+.+.+. ..+ -|++.|++| |+-|++-.-+.-+
T Consensus 19 ~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~D------lVittGG~g~g~~D~t~ea~~~~ 87 (164)
T 2is8_A 19 QDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLD------LILTNGGTGLAPRDRTPEATREL 87 (164)
T ss_dssp CCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCS------EEEEESCCSSSTTCCHHHHHHTT
T ss_pred ccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCC------EEEEcCCCCCCCCCChHHHHHHH
Confidence 4777777888888888776544333 3456788899888764 455 799999999 7999998877543
No 30
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=59.34 E-value=22 Score=30.52 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=35.6
Q ss_pred CCccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHH
Q 047888 93 RRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIR 142 (274)
Q Consensus 93 ~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~ 142 (274)
..+.||+|++.-....++..+.+++.|++++.++......|....++.+-
T Consensus 56 ~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg 105 (283)
T 2r79_A 56 LALRPDILIGTEEMGPPPVLKQLEGAGVRVETLSAKPDLEALESNLKKLG 105 (283)
T ss_dssp HTTCCSEEEECTTCCCHHHHHHHHHTTCCEEECCCCSSHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCccCcHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHH
Confidence 35889999987554457788889999988887644455666666665543
No 31
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=57.59 E-value=22 Score=30.89 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCeEEEcCCCC-------ChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 109 KEVMDFYASLGTKVVDESHDQ-------DTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~~dK-------D~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
+.++++++++|.+++.+-+.- |+.|+..++..+...+.. +.-++++++|
T Consensus 39 e~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~-----d~GIliCGTG 94 (231)
T 3c5y_A 39 EALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAA-----DFVVTGCGTG 94 (231)
T ss_dssp HHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSC-----SEEEEEESSS
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCC-----CeEEEEcCCc
Confidence 567888999999999985432 689988888887776543 2788888888
No 32
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=56.23 E-value=12 Score=30.76 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHHh-CCCCcCCCcEEEEEecCC-CChhhHHHHHHH
Q 047888 105 DSIRKEVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRDC-TPNLEKSNLRILVAGALG-GRFDHEAGNINV 174 (274)
Q Consensus 105 DSi~~~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~~-~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~ 174 (274)
||-.+-+.+.+++.|.++..+..- .|.-++..||+.+.+. +.+ -|++.|++| |.-|++-.-+.-
T Consensus 39 Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~D------lVittGG~s~g~~D~t~eal~~ 105 (178)
T 2pjk_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVD------VIISTGGTGYSPTDITVETIRK 105 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCC------EEEEESCCSSSTTCCHHHHHGG
T ss_pred ehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCC------EEEECCCCCCCCCcchHHHHHH
Confidence 666666778888889877654333 3456688888888765 455 799999998 799998776643
No 33
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=54.44 E-value=63 Score=28.58 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=45.8
Q ss_pred EEecCCceeEEEEccCCCCCEEEEEeecCCcccEEEccceeec-CCcccccCCc--eeeeeeEECceEEEEEeCCEEEEE
Q 047888 193 QLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDL-DNTETRFGGL--VSTSNIVKGEKVTVRSDSDLLWTI 269 (274)
Q Consensus 193 ~ll~~g~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L-~~~~l~~~~~--~s~SN~~~~~~v~I~~~~g~l~~i 269 (274)
+-|.+|.++.+ ......+.++++++.+ .|+..|-.|++ .+..--|.+. .+ --.-.+.+++|+..++.-+.+
T Consensus 34 ~~L~~Ge~~~~----~~~~~E~~iv~l~G~~-~V~~~g~~~~~~g~R~svF~~~~p~~-lYvp~g~~v~i~a~~~~~~~v 107 (270)
T 2qjv_A 34 WQLXAGESITL----PSDERERCLVLVAGLA-SVXAADSFFYRIGQRMSPFERIPAYS-VYLPHHTEAXVTAETDLELAV 107 (270)
T ss_dssp EEECTTCEEEE----CCSSEEEEEEEEESCE-EEEETTEEEEEECCCSSGGGCSCCCE-EEECSSCCEEEEESSSEEEEE
T ss_pred EEecCCCEEEe----cCCCcEEEEEEecceE-EEEECCEEEeccccccccccCCCCcE-EEECCCCEEEEEecCCceEEE
Confidence 44667766555 2456889999999975 59999999988 4443333321 11 111124478888877665555
Q ss_pred EE
Q 047888 270 SI 271 (274)
Q Consensus 270 ~~ 271 (274)
..
T Consensus 108 ~s 109 (270)
T 2qjv_A 108 CS 109 (270)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 34
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=54.27 E-value=21 Score=28.70 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHhc-----CCeEEEcCCC-CChhHHHHHHHHHHH-hCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 105 DSIRKEVMDFYASL-----GTKVVDESHD-QDTTDLHKCVAYIRD-CTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 105 DSi~~~~~~~~~~~-----g~~ii~~~~d-KD~TD~ekAl~~~~~-~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
||-.+-..+.+++. |.++..+..- .|.-++..||+.+.+ ...+ -|++.|++| |.-|++-.-+.-+
T Consensus 24 d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~D------lVittGG~g~g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 24 DRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMD------LILTLGGTGFTPRDVTPEATKKV 96 (167)
T ss_dssp CSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCS------EEEEESCCSSSTTCCHHHHHHHH
T ss_pred cCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCC------EEEECCCCCCCCCCchHHHHHHH
Confidence 55556666777777 7766544333 345678889988875 3555 799999998 7999987666444
No 35
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=54.21 E-value=25 Score=30.16 Aligned_cols=49 Identities=6% Similarity=-0.011 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCeEEEcCCC-------CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 109 KEVMDFYASLGTKVVDESHD-------QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~~d-------KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
++++++++++|.+++.+-+. -|+.|+..++..+...+.. +.-++++++|
T Consensus 23 ~~i~~~L~~~G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~~g~~-----d~GIliCGTG 78 (216)
T 2ppw_A 23 DSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAILLNTKAV-----DFVVTGCGTG 78 (216)
T ss_dssp HHHHHHHHHHTCEEEECSCCSCTTCCCCCHHHHHHHHHHHHHTTSC-----SEEEEEESSS
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCC-----CeEEEEcCCc
Confidence 46788999999999998443 2789988888888776644 2788888888
No 36
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=53.51 E-value=18 Score=29.29 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCCCChh-HHHHHHHHHHH-hCCCCcCCCcEEEEEecCC-CChhhHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHDQDTT-DLHKCVAYIRD-CTPNLEKSNLRILVAGALG-GRFDHEAGNIN 173 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~dKD~T-D~ekAl~~~~~-~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~ 173 (274)
.|+-.+-+.+.+++.|.++..+.--.|+- .+..|+..+.. ..++ -|+..|++| |.-|++-..+.
T Consensus 38 ~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~D------lVittGG~g~~~~D~t~ea~~ 104 (178)
T 3iwt_A 38 VDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVD------VIISTGGTGYSPTDITVETIR 104 (178)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCC------EEEEESCCSSSTTCCHHHHHG
T ss_pred CcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCC------EEEecCCcccCCCCchHHHHH
Confidence 47766778888999998887665555554 56777776654 3344 788899998 68888866553
No 37
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=51.70 E-value=46 Score=28.52 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCeEEEcC--CC----CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC
Q 047888 110 EVMDFYASLGTKVVDES--HD----QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~--~d----KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G 162 (274)
+++++++++|.+++.+. ++ -|+.|+..++..+...+.. +.-++++++|
T Consensus 24 ~l~~~L~~~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g~~-----d~GIliCGTG 77 (214)
T 3ono_A 24 ELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAV-----DFVVTGCGTG 77 (214)
T ss_dssp HHHHHHHHTTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHTTSC-----SEEEEEESSS
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCC-----CEEEEEcCCc
Confidence 67889999999999887 23 4788988888887776654 2778888888
No 38
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=49.70 E-value=31 Score=28.75 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHhcCCe--EEEc-CCCCChhHHHHHHHHHHHh-CCCCcCCCcEEEEEecCC-CChhhHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTK--VVDE-SHDQDTTDLHKCVAYIRDC-TPNLEKSNLRILVAGALG-GRFDHEAGNINV 174 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~--ii~~-~~dKD~TD~ekAl~~~~~~-~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~ 174 (274)
.||-.+-+.+++++.|.+ +..+ .--.|.-++..||+.+.+. ..+ -|+..|++| |.-|+|-.-+.-
T Consensus 21 ~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~D------lVitTGGtg~g~~D~T~ea~~~ 90 (195)
T 1di6_A 21 QDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCH------LVLTTGGTGPARRDVTPDATLA 90 (195)
T ss_dssp -CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCS------EEEEESCCSSSTTCCHHHHHHH
T ss_pred EchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCC------EEEECCCCCCCCCccHHHHHHH
Confidence 477777888888888765 2222 1224566788889888774 455 799999999 799998766644
No 39
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=43.16 E-value=48 Score=27.55 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=31.7
Q ss_pred ccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHH
Q 047888 95 YKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYI 141 (274)
Q Consensus 95 i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~ 141 (274)
+.||+|++.-.+..++..+.+++.|++++.+. .+...|....++.+
T Consensus 56 l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~-~~~~~~~~~~i~~l 101 (245)
T 1n2z_A 56 LKPDLVIAWRGGNAERQVDQLASLGIKVMWVD-ATSIEQIANALRQL 101 (245)
T ss_dssp TCCSEEEECTTTSCHHHHHHHHHHTCCEEECC-CCSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHCCCcEEEeC-CCCHHHHHHHHHHH
Confidence 78999998533456778888999998887653 34455655555544
No 40
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=43.03 E-value=53 Score=28.37 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=41.9
Q ss_pred EEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhHHHHHHHHHhcCCCeEEEEeCC
Q 047888 122 VVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHEAGNINVLYRFSDIRIILLSDD 189 (274)
Q Consensus 122 ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~lani~~L~~~~~~~i~li~~~ 189 (274)
+..-.|+++.|+ .+++.+.+.|.+ ++.+|+..| |++.++.-+..+-+ .+.+++++.-.
T Consensus 12 i~~gDP~~~~t~--~~~~~l~~~GaD-------~ielG~S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~ 70 (240)
T 1viz_A 12 VFKLDPNKDLPD--EQLEILCESGTD-------AVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSA 70 (240)
T ss_dssp EEEECTTSCCCH--HHHHHHHTSCCS-------EEEECC----CHHHHHHHHHHHTT-SSSCEEEECSC
T ss_pred EEeeCCCccccH--HHHHHHHHcCCC-------EEEECCCCCCCHHHHHHHHHHhhC-cCCCEEEecCc
Confidence 334578998886 667777777776 888887666 99999988888766 56788876655
No 41
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=42.50 E-value=64 Score=27.89 Aligned_cols=58 Identities=10% Similarity=0.128 Sum_probs=40.5
Q ss_pred eEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhHHHHHHHHHhcCCCeEEEEeC
Q 047888 121 KVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHEAGNINVLYRFSDIRIILLSD 188 (274)
Q Consensus 121 ~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~lani~~L~~~~~~~i~li~~ 188 (274)
-+....|||..++ .++..+.+.+.+ .+++|+.-| +.|+++.-+..+.+ .+.++++.--
T Consensus 14 h~~~~DPdk~~~~--~~l~~~~~~GtD-------aI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~ 72 (235)
T 3w01_A 14 HIFKLDPAKHISD--DDLDAICMSQTD-------AIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEIS 72 (235)
T ss_dssp EEEEECTTSCCCH--HHHHHHHTSSCS-------EEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECC
T ss_pred EEEeECCCCcCCH--HHHHHHHHcCCC-------EEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecC
Confidence 3455689998776 455556666665 777787766 89998888888777 5566665443
No 42
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=39.04 E-value=56 Score=28.05 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=40.8
Q ss_pred eEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhHHHHHHHHHhcCCCeEEEEeCC
Q 047888 121 KVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHEAGNINVLYRFSDIRIILLSDD 189 (274)
Q Consensus 121 ~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~lani~~L~~~~~~~i~li~~~ 189 (274)
-+....|||..++ .+++.+.+.|.+ .+++|++-| +.|+++.-+..+.+ .+.++++.-.+
T Consensus 9 h~~~iDPdk~~~~--~~~~~~~~~GtD-------~i~vGGs~gvt~~~~~~~v~~ik~-~~~Pvvlfp~~ 68 (228)
T 3vzx_A 9 HVFKLDPNKDLPD--EQLEILCESGTD-------AVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSA 68 (228)
T ss_dssp EEEEECTTSCCCT--THHHHHHTSSCS-------EEEECCCSCCCHHHHHHHHHHHTT-SSSCEEEECSC
T ss_pred EEEeECCCCCCCH--HHHHHHHHcCCC-------EEEECCcCCCCHHHHHHHHHHhhc-cCCCEEEeCCC
Confidence 3455689998776 566666666665 677777765 88888888887766 55666655433
No 43
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=38.65 E-value=77 Score=28.68 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCC
Q 047888 109 KEVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPN 147 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~ 147 (274)
+++.+.+++.|+++..++ ++++....+++++.+++...+
T Consensus 59 ~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d 100 (371)
T 1o2d_A 59 DDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFD 100 (371)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCC
Confidence 456677777777765554 889999999999999887666
No 44
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=37.87 E-value=42 Score=31.31 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-+.+.+++.|.++..+..- .|...+..||+.+.+ ..+ -|++.|++| |.-|++-.-+.-+
T Consensus 202 ~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~-~~D------lvittGG~s~g~~D~t~~al~~~ 268 (411)
T 1g8l_A 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADS-QAD------VVISSGGVSVGEADYTKTILEEL 268 (411)
T ss_dssp ECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH-HCS------EEEECSSSCSSSCSHHHHHHHHH
T ss_pred EcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhh-cCC------EEEECCCCCCCCcccHHHHHHhc
Confidence 5787778888899999877654333 445667788888776 344 788899988 8999998887654
No 45
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=36.22 E-value=49 Score=27.31 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHh---cCCeEEEcCCCC-ChhHHHHHHHHHHHh-CCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYAS---LGTKVVDESHDQ-DTTDLHKCVAYIRDC-TPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~---~g~~ii~~~~dK-D~TD~ekAl~~~~~~-~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-+.+.+++ .|.++..+..-. |.-++..||+.+.+. ..+ -|++.|++| |+-|++-.-+.-+
T Consensus 32 ~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~D------lVIttGGtg~g~~D~t~eal~~~ 103 (189)
T 1jlj_A 32 EDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELN------LILTTGGTGFAPRDVTPEATKEV 103 (189)
T ss_dssp CCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCS------EEEEESCCSSSTTCCHHHHHHHH
T ss_pred cchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCC------EEEEcCCCCCCCcccHHHHHHHH
Confidence 36666667777877 677665443333 445677888888763 455 799999998 7999987776543
No 46
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=35.73 E-value=72 Score=27.43 Aligned_cols=58 Identities=12% Similarity=0.254 Sum_probs=43.3
Q ss_pred EEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-ChhhHHHHHHHHHhcCCCeEEEEeCC
Q 047888 122 VVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDHEAGNINVLYRFSDIRIILLSDD 189 (274)
Q Consensus 122 ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH~lani~~L~~~~~~~i~li~~~ 189 (274)
+..-.|+++.|+ .+++.+.+.|.+ ++.+|+..| +++..+.-+..+.+ .+.+++++.-+
T Consensus 12 it~gDP~~~~t~--~~~~~l~~~GaD-------~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~ 70 (234)
T 2f6u_A 12 ITKLDPDRTNTD--EIIKAVADSGTD-------AVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSD 70 (234)
T ss_dssp EEEECTTSCCCH--HHHHHHHTTTCS-------EEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSS
T ss_pred EEeeCCCccccH--HHHHHHHHcCCC-------EEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCC
Confidence 334578998886 667777777776 888887766 88888888877766 56778777766
No 47
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=32.52 E-value=1.3e+02 Score=22.08 Aligned_cols=85 Identities=22% Similarity=0.148 Sum_probs=42.8
Q ss_pred CCcEEEEEeCCCCC-CCchHHhccC---CEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCH---HH
Q 047888 39 SLTYALVVLNQRLP-RFAPLLWQHA---KLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRK---EV 111 (274)
Q Consensus 39 ~~~~avIvlng~~~-~~~~~l~~~~---~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~---~~ 111 (274)
.+.+.+|+-..+.- ..+..++... ..+.+++.+...+.. + ....||+++=|++--.. +.
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~-l-------------~~~~~dlii~D~~l~~~~g~~~ 84 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQL-L-------------EKESVDIAILDVEMPVKTGLEV 84 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHH-H-------------TTSCCSEEEECSSCSSSCHHHH
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHH-h-------------hccCCCEEEEeCCCCCCcHHHH
Confidence 34455665544331 2223444432 235667766665543 1 34568999988764332 33
Q ss_pred HHHHHhc--CCeEEEcCCCCChhHHHHH
Q 047888 112 MDFYASL--GTKVVDESHDQDTTDLHKC 137 (274)
Q Consensus 112 ~~~~~~~--g~~ii~~~~dKD~TD~ekA 137 (274)
.+.+++. .++++.+....+......|
T Consensus 85 ~~~l~~~~~~~~ii~ls~~~~~~~~~~~ 112 (150)
T 4e7p_A 85 LEWIRSEKLETKVVVVTTFKRAGYFERA 112 (150)
T ss_dssp HHHHHHTTCSCEEEEEESCCCHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEeCCCCHHHHHHH
Confidence 4444432 4667766555444443333
No 48
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=30.57 E-value=1e+02 Score=27.95 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCC
Q 047888 109 KEVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPN 147 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~ 147 (274)
+.+.+.+++.|+++..+ .++++....+++++.+++.+.+
T Consensus 53 ~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d 94 (387)
T 3bfj_A 53 DKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCD 94 (387)
T ss_dssp HHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCC
Confidence 45667777778776555 4788999999999999998876
No 49
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=30.30 E-value=85 Score=28.61 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCC
Q 047888 110 EVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPN 147 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~ 147 (274)
.+.+.+++.|+++..+ .+++.....+++++.+++.+.+
T Consensus 50 ~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D 90 (383)
T 3ox4_A 50 QVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSD 90 (383)
T ss_dssp HHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcC
Confidence 4566777777766444 5889999999999999998877
No 50
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=26.77 E-value=59 Score=27.15 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=22.4
Q ss_pred ccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHH
Q 047888 95 YKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYI 141 (274)
Q Consensus 95 i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~ 141 (274)
+.||+|++.- +..++..+.+++.|++++.+++ ....|....++.+
T Consensus 59 l~PDLIi~~~-~~~~~~~~~L~~~gipvv~~~~-~~~~~~~~~i~~l 103 (260)
T 2q8p_A 59 LKPTHVLSVS-TIKDEMQPFYKQLNMKGYFYDF-DSLKGMQKSITQL 103 (260)
T ss_dssp TCCSEEEEEG-GGHHHHHHHHHHHTSCCEEECC-SSHHHHHHHHHHH
T ss_pred cCCCEEEecC-ccCHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHHH
Confidence 5567666542 2234455566666655554432 2334444444443
No 51
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=26.73 E-value=92 Score=28.85 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCCC-ChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHDQ-DTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNINVL 175 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~dK-D~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani~~L 175 (274)
.||-.+-+.+.+++.|.++..+..-. |.-.+..||+.+.+. .+ -|++.|++| |.-|++-.-+.-+
T Consensus 205 ~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~D------lVittGG~s~g~~D~t~~al~~~ 271 (402)
T 1uz5_A 205 YDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNV-GD------VVVISGGASGGTKDLTASVIEEL 271 (402)
T ss_dssp ECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHH-CS------EEEEECCC-----CHHHHHHHHH
T ss_pred EcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhC-CC------EEEEcCCCCCCCcccHHHHHHhh
Confidence 37777778888888898776544334 445677888887764 45 799999998 8999998877654
No 52
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=26.68 E-value=1.3e+02 Score=27.13 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCeEEEc---CCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 110 EVMDFYASLGTKVVDE---SHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~---~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
.+.+.+++.|+++..+ .++++....+.+++.+++.+.+ -|+.+| || =+|=
T Consensus 50 ~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d------~IIavG--GGsv~D~ 103 (386)
T 1rrm_A 50 KVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGAD------YLIAIG--GGSPQDT 103 (386)
T ss_dssp HHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCS------EEEEEE--SHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcC------EEEEeC--ChHHHHH
Confidence 4556666667665444 4788999999999999998887 555554 44 4443
No 53
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=26.55 E-value=1.2e+02 Score=26.15 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=26.9
Q ss_pred CccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCC
Q 047888 94 RYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQ 129 (274)
Q Consensus 94 ~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dK 129 (274)
.+.||+|++.- +..++..+.+++.|++++.++...
T Consensus 82 ~l~PDlIi~~~-~~~~~~~~~L~~~Gipvv~~~~~~ 116 (326)
T 3psh_A 82 ALKPDVVFVTN-YAPSEMIKQISDVNIPVVAISLRT 116 (326)
T ss_dssp HTCCSEEEEET-TCCHHHHHHHHTTTCCEEEECSCC
T ss_pred ccCCCEEEEeC-CCChHHHHHHHHcCCCEEEEeccc
Confidence 57899999863 335678889999999998876543
No 54
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=25.37 E-value=1.4e+02 Score=27.22 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCeEEEcC---CCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCC-Chhh
Q 047888 110 EVMDFYASLGTKVVDES---HDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGG-RFDH 167 (274)
Q Consensus 110 ~~~~~~~~~g~~ii~~~---~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GG-R~DH 167 (274)
.+.+.+++.|+++..++ +++.....+++++.+++.+.+ -|+.+| || =+|=
T Consensus 63 ~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D------~IIavG--GGsviD~ 116 (407)
T 1vlj_A 63 QVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVE------AVLGVG--GGSVVDS 116 (407)
T ss_dssp HHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCS------EEEEEE--SHHHHHH
T ss_pred HHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCC------EEEEeC--ChhHHHH
Confidence 45566666677766664 378889999999999998887 555454 45 4553
No 55
>4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A
Probab=25.20 E-value=2e+02 Score=24.86 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCeEEEcCCC--------CChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHH
Q 047888 109 KEVMDFYASLGTKVVDESHD--------QDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVL 175 (274)
Q Consensus 109 ~~~~~~~~~~g~~ii~~~~d--------KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L 175 (274)
.+++++++++|+.++-+.|= ..-|-.+.||.++.+++.- .+.|.|+. +.+|.-.|+..+
T Consensus 219 ~~l~~~~~~~gi~v~a~spL~~G~L~~~~g~t~aqvaL~w~l~~~~v------~~vI~g~~--~~~~l~en~~a~ 285 (292)
T 4exb_A 219 RPVIEYAAAHAKGILVKKALASGHACLGAGQDPVRASFELVFDQPGV------AAAIVGTI--NPLHLAHNVAMA 285 (292)
T ss_dssp HHHHHHHHHTTCEEEEECCSCC--------CCHHHHHHHHHHHSTTC------CEEEECCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcEEEEeccccCCccCCCCCCCHHHHHHHHHHhCCCC------eEEEeCCC--CHHHHHHHHHHh
Confidence 47788888888888776543 4456778899999888754 46777765 677777777654
No 56
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=24.81 E-value=95 Score=28.89 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHhcCCeEEEcCCCC-ChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCC-CChhhHHHHH
Q 047888 104 MDSIRKEVMDFYASLGTKVVDESHDQ-DTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG-GRFDHEAGNI 172 (274)
Q Consensus 104 fDSi~~~~~~~~~~~g~~ii~~~~dK-D~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~G-GR~DH~lani 172 (274)
.||-.+-+.+.+++.|.++..+..-. |.-.+..||+.+.+. .+ -|++.|++| |.-|++-.-+
T Consensus 206 ~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~D------lVittGG~s~g~~D~t~~al 269 (419)
T 2fts_A 206 RDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISR-AD------VIITSGGVSMGEKDYLKQVL 269 (419)
T ss_dssp ECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHH-CS------EEEEESCCSSSCCHHHHHHH
T ss_pred ecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhc-CC------EEEEcCCCcCCCcccHHHHH
Confidence 37777778888999998766544334 445677888888765 45 789999998 8999987776
No 57
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=23.64 E-value=1.1e+02 Score=26.90 Aligned_cols=45 Identities=29% Similarity=0.420 Sum_probs=31.9
Q ss_pred CccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHH
Q 047888 94 RYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYI 141 (274)
Q Consensus 94 ~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~ 141 (274)
.+.||+|++.-. .++..+.+++.|++++.+++ .+..|....++.+
T Consensus 114 al~PDLIi~~~~--~~~~~~~L~~~gipvv~~~~-~~~~~~~~~i~~l 158 (335)
T 4hn9_A 114 AATPDVVFLPMK--LKKTADTLESLGIKAVVVNP-EDQSLLEECITLV 158 (335)
T ss_dssp HTCCSEEEEEGG--GHHHHHHHHHTTCCEEEECC-CSHHHHHHHHHHH
T ss_pred hcCCCEEEEeCc--chhHHHHHHHcCCCEEEEcC-CCHHHHHHHHHHH
Confidence 578999998643 46678889999999887754 4455665555544
No 58
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=21.90 E-value=1.9e+02 Score=25.88 Aligned_cols=44 Identities=9% Similarity=0.121 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCeE--EEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEe
Q 047888 110 EVMDFYASLGTKV--VDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAG 159 (274)
Q Consensus 110 ~~~~~~~~~g~~i--i~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~G 159 (274)
.+.+.+++.|+++ ..+..+......+.+++.+++.+.+ -|+.+|
T Consensus 49 ~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d------~IIavG 94 (370)
T 1jq5_A 49 TIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAA------IVIGVG 94 (370)
T ss_dssp HHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCS------EEEEEE
T ss_pred HHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCC------EEEEeC
Confidence 4566676667665 4566666667788999998888876 555555
No 59
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=20.16 E-value=4.2e+02 Score=24.29 Aligned_cols=87 Identities=10% Similarity=0.179 Sum_probs=63.1
Q ss_pred CccccEEeeCCCCCCHHHHHHHHhcCCeEEEcCCC-CChhHHHHHHHHHHHhCCCCcCCCcEEEEE--ecC----CCChh
Q 047888 94 RYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHD-QDTTDLHKCVAYIRDCTPNLEKSNLRILVA--GAL----GGRFD 166 (274)
Q Consensus 94 ~i~Pd~iiGDfDSi~~~~~~~~~~~g~~ii~~~~d-KD~TD~ekAl~~~~~~~~~~~~~~~~I~i~--Ga~----GGR~D 166 (274)
.+.|-+-||=++.-+.+.++...+.|.+|+--..- -+-.|...|++++.+.|.. +|+++ |.. -.|.+
T Consensus 224 ~~vd~lkIgs~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~------~i~L~~rG~s~yp~~~~~~ 297 (385)
T 3nvt_A 224 DYVDVIQIGARNMQNFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNG------KIILCERGIRTYEKATRNT 297 (385)
T ss_dssp TTCSEEEECGGGTTCHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCC------CEEEEECCBCCSCCSSSSB
T ss_pred hhCCEEEECcccccCHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCC------eEEEEECCCCCCCCCCccc
Confidence 35666679999998989899998888888744333 4778999999999998876 56665 343 25777
Q ss_pred hHHHHHHHHHhcCCCeEEEEe
Q 047888 167 HEAGNINVLYRFSDIRIILLS 187 (274)
Q Consensus 167 H~lani~~L~~~~~~~i~li~ 187 (274)
--|..|..|.+..+.++ +.|
T Consensus 298 ldl~~i~~lk~~~~lpV-~~D 317 (385)
T 3nvt_A 298 LDISAVPILKKETHLPV-MVD 317 (385)
T ss_dssp CCTTHHHHHHHHBSSCE-EEE
T ss_pred cCHHHHHHHHHhcCCCE-EEc
Confidence 66777777766556565 444
No 60
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=20.12 E-value=33 Score=28.89 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=30.1
Q ss_pred EEeeCCCCCCHHH----HHHHHhcCCeEEEcCCCC-------ChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhh
Q 047888 99 LIKGDMDSIRKEV----MDFYASLGTKVVDESHDQ-------DTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDH 167 (274)
Q Consensus 99 ~iiGDfDSi~~~~----~~~~~~~g~~ii~~~~dK-------D~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH 167 (274)
.+||+-=.-.+-+ .+.+.+.|+.+....... +..|.++|++.+.+...-. ...+..++|++ ||+.|
T Consensus 119 SvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~~~Av~aLH~~F~L~--~~~~~~v~~Gt-G~v~~ 195 (200)
T 4go7_X 119 SLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFGLG--GDEEATVYAGT-GRLEH 195 (200)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHHTC------CCEECC-C------
T ss_pred eeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHHHHHHHHHHhCCC--CCceEEEEEcc-cccee
Confidence 3677754444432 344444555443222111 4678889999887643211 11256666654 78877
Q ss_pred H
Q 047888 168 E 168 (274)
Q Consensus 168 ~ 168 (274)
-
T Consensus 196 ~ 196 (200)
T 4go7_X 196 H 196 (200)
T ss_dssp -
T ss_pred c
Confidence 3
Done!