BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047889
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 54/64 (84%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
AITSAYYRGA+GALLVYD+ K T+ENV RWLK+LRDHA SNIVIML+GNKSDL+HL
Sbjct: 93 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV 152
Query: 61 MCEE 64
+E
Sbjct: 153 PTDE 156
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 101 bits (252), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 54/64 (84%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
AITSAYYRGA+GALLVYD+ K T+ENV RWLK+LRDHA SNIVIML+GNKSDL+HL
Sbjct: 84 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV 143
Query: 61 MCEE 64
+E
Sbjct: 144 PTDE 147
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 101 bits (252), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 54/64 (84%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
AITSAYYRGA+GALLVYD+ K T+ENV RWLK+LRDHA SNIVIML+GNKSDL+HL
Sbjct: 72 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV 131
Query: 61 MCEE 64
+E
Sbjct: 132 PTDE 135
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 101 bits (252), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 54/64 (84%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
AITSAYYRGA+GALLVYD+ K T+ENV RWLK+LRDHA SNIVIML+GNKSDL+HL
Sbjct: 93 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV 152
Query: 61 MCEE 64
+E
Sbjct: 153 PTDE 156
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 53/63 (84%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSM 61
ITSAYYRGA+GALLVYD+ K T+ENV RWLK+LRDHA SNIVIML+GNKSDL+HL
Sbjct: 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP 129
Query: 62 CEE 64
+E
Sbjct: 130 TDE 132
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 53/57 (92%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57
AITSAYYRGA+GALLVYD+TK +FEN+ +WLK+LRD+A SNIVI+L+GNKSDLKHL
Sbjct: 72 AITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
AITSAYYRGA+GALLVYD+ K T+ENV RWLK+LRDHA SNIVI L+GNKSDL+HL
Sbjct: 69 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAV 128
Query: 61 MCEE 64
+E
Sbjct: 129 PTDE 132
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
AITSAYYRGA+GALLVYD+ K T+ENV RWLK+LRDHA SNIVI L+GNKSDL+HL
Sbjct: 75 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAV 134
Query: 61 MCEE 64
+E
Sbjct: 135 PTDE 138
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 51/64 (79%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
AITSAYYRGA+GAL+VYD++KS+++EN + WL +LR++A N+ + LIGNKSDL HL
Sbjct: 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAV 136
Query: 61 MCEE 64
EE
Sbjct: 137 PTEE 140
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 48/64 (75%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
AITSAYYRGA+GALLV+D+TK T+ V RWLK+L DHA + IV+ML+GNKSDL
Sbjct: 89 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREV 148
Query: 61 MCEE 64
EE
Sbjct: 149 PTEE 152
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 48/64 (75%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
AITSAYYRGA+GALLV+D+TK T+ V RWLK+L DHA + IV+ML+GNKSDL
Sbjct: 74 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREV 133
Query: 61 MCEE 64
EE
Sbjct: 134 PTEE 137
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 49/57 (85%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57
AITSAYYRGA+GAL+VYD++KS+++EN + WL +LR++A N+ + LIGNKSDL HL
Sbjct: 74 AITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
+IT +YYRGA GALLVYD+T+ TF +++ WL+D R H+ SN+VIMLIGNKSDL+ +
Sbjct: 85 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDV 144
Query: 61 MCEE 64
EE
Sbjct: 145 KREE 148
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 46/55 (83%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+IT +YYRGA GALLVYD+T+ TF +++ WL+D R H+ SN+VIMLIGNKSDL+
Sbjct: 74 SITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 44/56 (78%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57
IT +YYR A GA+L YD+TK ++F +V W++D+R +AGSNIV +LIGNKSDL L
Sbjct: 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
A+T +YYRGA GAL+VYD+T+ +T+ ++S WL D R+ N VI+LIGNK+DL+ +
Sbjct: 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV 138
Query: 61 MCEE 64
EE
Sbjct: 139 TYEE 142
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
A+T +YYRGA GAL+VYD+T+ +T+ ++S WL D R+ N VI+LIGNK+DL+ +
Sbjct: 94 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV 153
Query: 61 MCEE 64
EE
Sbjct: 154 TYEE 157
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
IT+AYYRGA+G +LVYDVT TF N+ +W K + +HA ++L+GNKSD++
Sbjct: 72 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 125
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
IT+AYYRGA+G +LVYDVT TF N+ +W K + +HA ++L+GNKSD++
Sbjct: 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
IT+AYYRGA+G +LVYD+T TF N+ +W K + +HA ++L+GNKSD++
Sbjct: 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53
IT+AYYRGA G +LVYDVT TF N+ +W K + +HA ++L+GNKSD
Sbjct: 68 ITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 42/53 (79%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
IT+AYYRGA+G +LVYD+T +F+N+ W++++ +HA +++ M++GNK D+
Sbjct: 71 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 42/53 (79%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
IT+AYYRGA+G +LVYD+T +F+N+ W++++ +HA +++ M++GNK D+
Sbjct: 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53
IT+AYYRGA G +LVYD+T TF N+ +W K + +HA ++L+GNKSD
Sbjct: 68 ITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++T +YYRGA GALLVYD+T T+ +++ WL D R A NIV++L GNK DL
Sbjct: 89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++T +YYRGA GALLVYD+T T+ ++ WL D R A NIVI+L GNK DL
Sbjct: 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 127
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++T +YYRGA GALLVYD+T T+ ++ WL D R A NIVI+L GNK DL
Sbjct: 75 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 128
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++T +YYRGA GALLVYD+T T+ ++ WL D R A NIVI+L GNK DL
Sbjct: 72 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL---KHLL 58
ITS+YYRGA G ++VYDVT ++ NV +WL+++ +A N+ +L+GNKSDL K +
Sbjct: 74 ITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVD 133
Query: 59 NSMCEEY 65
N+ +E+
Sbjct: 134 NTTAKEF 140
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL---KHLL 58
ITS+YYRGA G ++VYDVT ++ NV +WL+++ +A N+ +L+GNKSDL K +
Sbjct: 74 ITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVD 133
Query: 59 NSMCEEY 65
N+ +E+
Sbjct: 134 NTTAKEF 140
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
ITS+YYRGA G ++VYDVT +F NV +WL+++ +A N+ +L+GNK DL
Sbjct: 71 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
ITS+YYRGA G ++VYDVT +F NV +WL+++ +A N+ +L+GNK DL
Sbjct: 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
ITS+YYRGA G ++VYDVT +F NV +WL+++ +A N+ +L+GNK DL
Sbjct: 64 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 116
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
ITS+YYRGA G ++VYDVT +F NV +WL+++ +A N+ +L+GNK DL
Sbjct: 71 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
ITS+YYRGA G ++VYDVT +F NV +WL+++ +A N+ +L+GNK DL
Sbjct: 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
ITS+YYRGA G ++VYDVT +F NV +WL+++ +A N+ +L+GNK DL
Sbjct: 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
ITS+YYRGA G ++VYDVT +F NV +WL+++ +A N+ +L+GNK DL
Sbjct: 90 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
A+ YYRG+ A++VYD+TK TF + W+++LR H +IV+ + GNK DL +
Sbjct: 69 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREV 128
Query: 61 M 61
M
Sbjct: 129 M 129
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
A+ YYRG+ A++VYD+TK TF + W+++LR H +IV+ + GNK DL +
Sbjct: 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREV 129
Query: 61 M 61
M
Sbjct: 130 M 130
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
ITS+YYRGA G ++VYDVT +F NV +WL+++ +A N+ +L+GNK DL
Sbjct: 62 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
YYRGA A++VYD+T + TF W+K+L+ A NIVI L GNK+DL
Sbjct: 74 YYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
YYRGA A++VYD+T + TF W+K+L+ A NIVI L GNK+DL
Sbjct: 72 YYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T + TF W+K+L+ A NIVI L GNK+DL
Sbjct: 69 SLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
ITS+YYRGA G ++VYDVT +F+NV +W++++ +A N+ +L+GNK DL
Sbjct: 73 TITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDL 126
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 38/54 (70%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRG+ A++VYD+TK +F + +W+K+L++H NIV+ + GNK DL
Sbjct: 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
ITS+YYRG+ G ++VYDVT +F V WL+++ +A S ++ +L+GNK DLK
Sbjct: 72 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
ITS+YYRG+ G ++VYDVT +F V WL+++ +A S ++ +L+GNK DLK
Sbjct: 72 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
YYRGA A++V+DVT +FE +W+++L+ N+V+ L GNKSDL
Sbjct: 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T +F W+K+L+ A NIVI L GNK+DL
Sbjct: 71 SLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53
+ITSAYYR A G +LVYD+TK TF+++ +W+K + +A + ++L+GNK D
Sbjct: 90 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 142
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T +F W+K+L+ A NIVI L GNK+DL
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T +F W+K+L+ A NIVI L GNK+DL
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
ITS+YYRG+ G ++VYDVT +F V WL+++ +A S ++ +L+GNK DLK
Sbjct: 85 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 139
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T +F W+K+L+ A NIVI L GNK+DL
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T +F W+K+L+ A NIVI L GNK+DL
Sbjct: 71 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T +F W+K+L+ A NIVI L GNK+DL
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T +F W+K+L+ A NIVI L GNK+DL
Sbjct: 69 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T +F W+K+L+ A NIVI L GNK+DL
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T +F W+K+L+ A NIVI L GNK+DL
Sbjct: 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
++ YYRGA A++VYD+T TF W+K+L+ A +IVI L GNK+DL
Sbjct: 72 SLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADL 125
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 45/71 (63%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
++ +Y R + A++VYD+T +FEN ++W++D+ + G +++I L+GNK+DL L
Sbjct: 65 SLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKV 124
Query: 61 MCEEYLIKSRS 71
EE K++
Sbjct: 125 TYEEGXQKAQE 135
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
++ +Y R + A++VYD+T +F+ ++W+ D+R GS+++IML+GNK+DL
Sbjct: 70 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV 129
Query: 61 MCEE 64
EE
Sbjct: 130 SIEE 133
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
++ +Y R + A++VYD+T +F+ ++W+ D+R GS+++IML+GNK+DL
Sbjct: 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV 136
Query: 61 MCEE 64
EE
Sbjct: 137 SIEE 140
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
++ +Y R + A++VYD+T + +F S+W+ D+R GS+++IML+GNK+DL
Sbjct: 78 SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 137
Query: 61 MCEE 64
EE
Sbjct: 138 STEE 141
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 38/53 (71%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
ITS+YYRGA G ++VYDVT +F NV +WL+++ +A N+ +L+G K DL
Sbjct: 73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL 125
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
++ +Y R + A++VYD+T +F+ S+W+ D+R GS+++IML+GNK+DL
Sbjct: 66 SLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQI 125
Query: 61 MCEE 64
EE
Sbjct: 126 TIEE 129
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
++ +Y R + A++VYD+T +F+ ++W+ D+R GS+++IML+GNK+DL
Sbjct: 70 SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV 129
Query: 61 MCEE 64
EE
Sbjct: 130 SIEE 133
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56
++T AYYR A LL+YDVT +F+N+ WL ++ ++A ++ +ML+GNK D H
Sbjct: 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
++ +Y R + A++VYD+T +F+ ++W+ D+R GS+++IML+GNK+DL
Sbjct: 65 SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV 124
Query: 61 MCEE 64
EE
Sbjct: 125 SIEE 128
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
++ +Y R + A++VYD+T +F+ ++W+ D+R GS+++IML+GNK+DL
Sbjct: 80 SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV 139
Query: 61 MCEE 64
EE
Sbjct: 140 SIEE 143
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56
IT+AYYRGA+G +L+YD+T +F V W ++ ++ N ++L+GNK D++
Sbjct: 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
A+ YYR + GA+LVYD+T +F+ V W+K+LR G+ I + ++GNK DL+
Sbjct: 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
A+ YYR + GA+LVYD+T +F+ V W+K+LR G+ I + ++GNK DL+
Sbjct: 84 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
A+ YYR + GA+LVYD+T +F+ V W+K+LR G+ I + ++GNK DL+
Sbjct: 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53
++ YYR A AL+VYDVTK +F W+K+L + A +I+I L+GNK D
Sbjct: 67 SLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
IT+AYYRGA+G +L+YD+T +F V W ++ ++ N ++L+GNK D++
Sbjct: 70 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 123
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
IT+AYYRGA+G LL+YD+ +F V W ++ ++ N ++L+GNK DL+
Sbjct: 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+I +Y+R A G LL+YDVT +F N+ W+ + D A + IML+GNK+D++
Sbjct: 92 SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53
ITS YYRG G ++VYDVT + +F NV RWL ++ + ++ +L+GNK+D
Sbjct: 73 TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND 124
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
IT+AYYRGA G +L YD+T +F V W ++ ++ N ++L+GNK D +
Sbjct: 73 ITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXE 126
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGS-NIVIMLIGNKSDLK 55
++T+A++R A+G LL++D+T +F NV W+ L+ HA S N I+L GNKSDL+
Sbjct: 85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSN-IVIMLIGNKSD 53
+T +YYRGA G +LVYDVT+ TF + WL +L + N IV L+GNK D
Sbjct: 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56
+IT +YYR A +L YD+T +F + WL+++ +A + ++ +L+GNK DL
Sbjct: 90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDL 54
++T+A++R A+G LL++D+T +F NV W+ L+ +A N I+LIGNK+DL
Sbjct: 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL 153
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLK 55
++T+A++R A+G LL++D+T +F NV W+ L+ +A N I+LIGNK+DL
Sbjct: 85 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 140
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDL 54
++T+A++R A+G LL++D+T +F NV W+ L+ +A N I+LIGNK+DL
Sbjct: 85 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL 139
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 6 YYRGALGALLVYDVTKSTTFENVSRW---LKDLRDHAGSNIVIMLIGNKSDLKHLLNSMC 62
Y GA G LLVYD+T +FEN+ W +K + + + + ++ L+GNK DL+H+
Sbjct: 76 YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP 135
Query: 63 EEYL 66
E++L
Sbjct: 136 EKHL 139
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56
+ YY GA GA+L +DVT T +N++RW+K+ + G+ I++ NK D+K+
Sbjct: 77 LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDL 54
++T+A++R A G LL +D+T +F NV W L+ +A N I+LIGNK+DL
Sbjct: 85 SLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADL 139
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLK 55
++T+A++R A G LL +D+T +F NV W L+ +A N I+LIGNK+DL
Sbjct: 85 SLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLP 140
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSN----IVIMLIGNKSDL---KHL 57
A+YRGA +LVYDVT +++FEN+ W + HA N +++GNK D K +
Sbjct: 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI 136
Query: 58 LNSMCEEYLIKS 69
++ + L KS
Sbjct: 137 VSEKSAQELAKS 148
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60
AIT AYYRGA +LV+ T +FE +S W + + G +I L+ NK D LL+
Sbjct: 69 AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID---LLDD 124
Query: 61 MC 62
C
Sbjct: 125 SC 126
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53
+I YYRGA A++V+D++ S T + W+ L+ SN +I+L+ NK D
Sbjct: 108 SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKID 158
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 74 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 127
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 74 GLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 127
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 74 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 127
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 74 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 127
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 74 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 127
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 67 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 120
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 74 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 127
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 74 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 127
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 74 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 127
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 70 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 123
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 76 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 129
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 79 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 132
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 79 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 132
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++ +DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 74 GLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIK 127
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 76 GLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVK 129
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 68 GLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE 122
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56
+ YY A A++++DVT T++NV W +DL NI I+L GNK D+K
Sbjct: 69 GLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE 123
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSN-IVIMLIGNKSDLK 55
YYR + VYD T +F ++ W+++ + H +N I +L+GNK DL+
Sbjct: 99 YYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSN-IVIMLIGNKSDLK 55
++ YYR + VYD+T +F ++ W+++ + H +N I +L+GNK DL+
Sbjct: 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGS----NIVIMLIGNKSDLKH 56
A+YRGA +LV+DVT TF+ + W + A N +++GNK DL++
Sbjct: 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGS----NIVIMLIGNKSDLKH 56
A+YRGA +LV+DVT TF+ + W + A N +++GNK DL++
Sbjct: 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKD-LRDHAGSNIVIMLIGNKSDLKHLLN 59
A+ Y R G LLV+ VT +FE + ++ + LR ++LIGNK+DL H
Sbjct: 68 AMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ 127
Query: 60 SMCEE 64
EE
Sbjct: 128 VTQEE 132
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGS----NIVIMLIGNKSDLKH 56
A+YRGA +LV+DVT TF+ + W + A N +++GNK DL++
Sbjct: 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGS----NIVIMLIGNKSDLKH 56
A+YRGA +LV+DVT TF+ + W + A N +++GNK D ++
Sbjct: 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFEN 131
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA----GSNIVIMLIGNKSDLKH 56
++ + +YRG+ LL + V S +F+N+S W K+ +A + +++GNK+D+K
Sbjct: 75 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE 134
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDH--AGSNIVIMLIGNKSDLKHLLNSM 61
+ R G +LVYD+T +FE V LK++ D N+ ++L+GNK+DL H
Sbjct: 93 EGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVS 151
Query: 62 CEE 64
EE
Sbjct: 152 TEE 154
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLK-DLRDHAGSNIVIMLIGNKSDLKHL 57
A+ Y R G L+VY VT +FE+V R+ + LR + ++L+ NK DL HL
Sbjct: 76 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 133
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLK-DLRDHAGSNIVIMLIGNKSDLKHL 57
A+ Y R G L+VY VT +FE+V R+ + LR + ++L+ NK DL HL
Sbjct: 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLK-DLRDHAGSNIVIMLIGNKSDLKHL 57
A+ Y R G L+VY VT +FE+V R+ + LR + ++L+ NK DL HL
Sbjct: 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLK-DLRDHAGSNIVIMLIGNKSDLKHL 57
A+ Y R G L+VY VT +FE+V R+ + LR + ++L+ NK DL HL
Sbjct: 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKD-LRDHAGSNIVIMLIGNKSDLKHLLN 59
AI Y+R G L V+ +T+ +F + + + LR N+ +L+GNKSDL+
Sbjct: 77 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 136
Query: 60 SMCEE 64
EE
Sbjct: 137 VSVEE 141
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKD-LRDHAGSNIVIMLIGNKSDLKHLLN 59
AI Y+R G L V+ +T+ +F + + + LR N+ +L+GNKSDL+
Sbjct: 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 140
Query: 60 SMCEE 64
EE
Sbjct: 141 VSVEE 145
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKD-LRDHAGSNIVIMLIGNKSDLKHLLN 59
AI Y+R G L V+ +T+ +F + + + LR N+ +L+GNKSDL+
Sbjct: 69 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 128
Query: 60 SMCEE 64
EE
Sbjct: 129 VSVEE 133
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKD-LRDHAGSNIVIMLIGNKSDLKHLLN 59
AI Y+R G L V+ +T+ +F + + + LR N+ +L+GNKSDL+
Sbjct: 69 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 128
Query: 60 SMCEE 64
EE
Sbjct: 129 VSVEE 133
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKD-LRDHAGSNIVIMLIGNKSDLKHLLN 59
AI Y+R G L V+ +T+ +F + + + LR N+ +L+GNKSDL+
Sbjct: 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 126
Query: 60 SMCEE 64
EE
Sbjct: 127 VSVEE 131
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 7 YRGALGALLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLK 55
YRGA +L + + ++ENV+ +W+ +LR H + I+L+G K DL+
Sbjct: 75 YRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKD-LRDHAGSN-IVIMLIGNKSDLKHLL 58
AI Y+R G LLV+ +T+ +F + + + LR A + I ++++GNKSDL+
Sbjct: 70 AIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERR 129
Query: 59 NSMCEE 64
EE
Sbjct: 130 QVPVEE 135
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKD-LRDHAGSN-IVIMLIGNKSDLKHLL 58
AI Y+R G LLV+ +T+ +F + + + LR A + I ++++GNKSDL+
Sbjct: 66 AIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERR 125
Query: 59 NSMCEE 64
EE
Sbjct: 126 QVPVEE 131
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 7 YRGALGALLVYDVTKSTTFENVSR-WLKDLRDHAGSNIVIMLIGNKSDLK 55
YRGA +L + + ++ENVS+ W+ +L+ H + I+L+G K DL+
Sbjct: 77 YRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR 125
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 7 YRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLK 55
YRGA LL + + ++EN+ +WL +L+ H I I+L+G K DL+
Sbjct: 75 YRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLR 123
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 6 YYRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLK 55
+Y A LL +DVT +F+N+ +RW ++ +H + I+++G K+DL+
Sbjct: 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLR 151
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 4 SAYYRGALGALLVYDVTKSTTFENVSRW---LKDLRDHAGSNIVIMLIGNKSDLKH 56
S Y+ G A+LV+DV+ +FE+ W LK R + +L+ NK+DL
Sbjct: 91 SQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA----GSNIVIMLIGNKSDL 54
++ + +YRG+ LL + V S +F+N+S W K+ +A + +++GNK D+
Sbjct: 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA----GSNIVIMLIGNKSDL 54
++ + +YRG+ LL + V S +F+N+S W K+ +A + +++GNK D+
Sbjct: 73 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 130
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNKSDL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNKSDL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLK------DLRDHAGSNIVIMLIGNKSD 53
++ + +YRGA LL + V +FEN+ W K D++D + +++GNK D
Sbjct: 71 SLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDP--EHFPFVVLGNKVD 127
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 9 GALGALLVYDVTKSTTFENVSRWLKDLRD-HAGSNIVIMLIGNKSDL 54
G G +LVY VT +F+ + + L + H + + ++L+GNK+DL
Sbjct: 95 GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-----GSNIVIMLIGNKSDLK 55
A+ Y + G LVY +T +TF + L+DLR+ ++ ++L+GNK DL+
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKDTEDVPMILVGNKCDLE 121
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDL-RDHAGSNIVIMLIGNKSDL 54
A+ Y R G L V+ + + +FE++ + + + R ++ ++L+GNKSDL
Sbjct: 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDL-RDHAGSNIVIMLIGNKSDL 54
A+ Y R G L V+ + + +FE++ + + + R ++ ++L+GNKSDL
Sbjct: 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-----GSNIVIMLIGNKSDLK 55
A+ Y + G LVY +T +TF + L+DLR+ ++ ++L+GNK DL+
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKDTEDVPMILVGNKCDLE 121
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-----GSNIVIMLIGNKSDLK 55
A+ Y + G LVY +T +TF + L+DLR+ ++ ++L+GNK DL+
Sbjct: 68 AMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKDTDDVPMILVGNKCDLE 123
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDL-RDHAGSNIVIMLIGNKSDL 54
A+ Y R G L V+ + + +FE++ + + + R ++ ++L+GNKSDL
Sbjct: 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-----GSNIVIMLIGNKSDLK 55
A+ Y + G LVY +T +TF + L+DLR+ ++ ++L+GNK DL+
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKDTDDVPMILVGNKCDLE 121
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 72 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 126
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 71 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 71 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL+
Sbjct: 101 LMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQ 143
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL+
Sbjct: 81 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQ 123
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 71 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 12 GALLVYDVTKSTTFENVSRWLKDLRDHAGS-NIVIMLIGNKSDL 54
G +LVY VT +FE + L D G I IML+GNK DL
Sbjct: 80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL+
Sbjct: 101 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQ 143
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 81 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 123
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 12 GALLVYDVTKSTTFENVSRWLKDLRDHAGS-NIVIMLIGNKSDL 54
G +LVY VT +FE + L D G I IML+GNK DL
Sbjct: 80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 85 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 127
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 81 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 123
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 82 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 124
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 84 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 126
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 81 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 123
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 73 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 127
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 84 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 126
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 83 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 125
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 82 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 124
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 81 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 123
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 83 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 125
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 79 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 121
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GNK DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 12 GALLVYDVTKSTTFENVSRWLKDLRDHAGS-NIVIMLIGNKSDL 54
G +LVY VT +FE + L D G I IML+GNK DL
Sbjct: 78 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 121
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 81 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 123
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 79 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 121
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 12 GALLVYDVTKSTTFENVSRWLKDLRDHAGS-NIVIMLIGNKSDL 54
G +LVY VT +FE + L D G I IML+GNK DL
Sbjct: 75 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 118
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSR-WLKDLRDHAGSNIVIMLIGNKSDLK 55
A+ Y R G LLV+ + +F V + + + LR + ++L+GNK+DL+
Sbjct: 72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH 56
L+ + + + EN+ +W +++ H N+ I+L+GNK DL++
Sbjct: 83 LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 125
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 8 RGALGALLVYDVTKSTTFENVSRWLKDLR-DHAGSNIVIMLIGNKSDLKHLLNSMCEE 64
+G ++VY + +FE+ S LR H ++ I+L+GNK+DL EE
Sbjct: 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEE 133
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54
A+ Y R G L V+ + + +FE++ ++ + ++ S+ V M L+GN+ DL
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL 120
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDL-RDHAGSNIVIMLIGNKSDL 54
A+ Y R G L V+ + + +FE++ + + + R ++ ++L+GNK DL
Sbjct: 84 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 138
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLRD-HAGSNIVIMLIGNKSDL 54
L+VY +T +FE S LR +I I+L+GNKSDL
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLRD-HAGSNIVIMLIGNKSDL 54
L+VY +T +FE S LR +I I+L+GNKSDL
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLRD-HAGSNIVIMLIGNKSDL 54
L+VY +T +FE S LR +I I+L+GNKSDL
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 157
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDL-RDHAGSNIVIMLIGNKSDLK 55
A+ Y R G L V+ + + +FE++ + + + R ++ ++L+GNK DL
Sbjct: 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLRD-HAGSNIVIMLIGNKSDL 54
L+VY +T +FE S LR +I I+L+GNKSDL
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 14 LLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLK 55
L+ + V + EN+ +W+ +++ H N+ I+L+ NK DL+
Sbjct: 101 LMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLR 142
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLRD-HAGSNIVIMLIGNKSDL 54
++VY VT +FE S LR ++ I+L+GNKSDL
Sbjct: 82 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 123
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLRD-HAGSNIVIMLIGNKSDL 54
++VY VT +FE S LR ++ I+L+GNKSDL
Sbjct: 77 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLRD-HAGSNIVIMLIGNKSDL 54
++VY VT +FE S LR ++ I+L+GNKSDL
Sbjct: 82 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 123
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 7 YRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCE 63
Y + L+ +D+++ T ++V +W ++++ N ++L+G KSDL+ ++++ E
Sbjct: 92 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVE 148
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 7 YRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCE 63
Y + L+ +D+++ T ++V +W ++++ N ++L+G KSDL+ ++++ E
Sbjct: 76 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVE 132
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 7 YRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCE 63
Y + L+ +D+++ T ++V +W ++++ N ++L+G KSDL+ ++++ E
Sbjct: 97 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVE 153
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLR-DHAGSNIVIMLIGNKSDL 54
L+V+ VT +F V L LR ++ ++L+GNKSDL
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLRDHAGS---NIVIMLIGNKSDL 54
L+V+ VT +F V L LR AG ++ ++L+GNKSDL
Sbjct: 80 LIVFSVTDRRSFSKVPETLLRLR--AGRPHHDLPVILVGNKSDL 121
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLRDHAGS---NIVIMLIGNKSDL 54
L+V+ VT +F V L LR AG ++ ++L+GNKSDL
Sbjct: 90 LIVFSVTDRRSFSKVPETLLRLR--AGRPHHDLPVILVGNKSDL 131
>pdb|3T3A|A Chain A, Crystal Structure Of H107r Mutant Of Extracellular
Domain Of Mouse Receptor Nkr-P1a
pdb|3T3A|B Chain B, Crystal Structure Of H107r Mutant Of Extracellular
Domain Of Mouse Receptor Nkr-P1a
Length = 139
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 31 WLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEY 65
W + L D G +MLI ++ +L+ LL+S+ E+Y
Sbjct: 27 WEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKY 61
>pdb|3M9Z|A Chain A, Crystal Structure Of Extracellular Domain Of Mouse
Nkr-P1a
Length = 139
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 31 WLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEY 65
W + L D G +MLI ++ +L+ LL+S+ E+Y
Sbjct: 27 WEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKY 61
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 14 LLVYDVTKSTTFENVSRWLKDLRDHAG--SNIVIMLIGNKSD 53
+LVY +T + E + + + + G +I IML+GNK D
Sbjct: 79 ILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 25 FENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54
F+ WL L G+N V +L+GNK+DL
Sbjct: 80 FDFNGSWLPGLHRFVGNNKV-LLVGNKADL 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,943,078
Number of Sequences: 62578
Number of extensions: 60936
Number of successful extensions: 461
Number of sequences better than 100.0: 229
Number of HSP's better than 100.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 229
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)