Query 047889
Match_columns 72
No_of_seqs 175 out of 1415
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 06:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 2.5E-22 8.5E-27 116.1 8.3 71 1-71 77-147 (216)
2 2g3y_A GTP-binding protein GEM 99.7 7.6E-18 2.6E-22 96.9 7.9 69 2-70 104-173 (211)
3 2fu5_C RAS-related protein RAB 99.7 2.4E-17 8.1E-22 91.6 9.5 69 2-70 73-141 (183)
4 3cbq_A GTP-binding protein REM 99.7 1.2E-17 4.2E-22 94.4 7.8 70 2-71 89-159 (195)
5 2hup_A RAS-related protein RAB 99.7 2.6E-17 8.7E-22 93.3 8.2 70 2-71 94-163 (201)
6 2cjw_A GTP-binding protein GEM 99.7 9.2E-17 3.1E-21 90.6 9.4 69 2-70 73-142 (192)
7 3t5g_A GTP-binding protein RHE 99.7 1.5E-16 5E-21 88.2 9.6 70 2-71 70-140 (181)
8 3q85_A GTP-binding protein REM 99.7 8.3E-17 2.8E-21 88.2 8.2 70 2-71 68-138 (169)
9 3q3j_B RHO-related GTP-binding 99.7 8.5E-17 2.9E-21 92.1 8.5 69 2-71 91-172 (214)
10 3dz8_A RAS-related protein RAB 99.7 9.2E-17 3.2E-21 90.1 8.4 70 2-71 88-157 (191)
11 2iwr_A Centaurin gamma 1; ANK 99.7 1.1E-16 3.8E-21 88.5 8.6 67 4-70 67-138 (178)
12 3q72_A GTP-binding protein RAD 99.7 1.2E-16 4.1E-21 87.4 8.7 70 2-71 65-135 (166)
13 2a5j_A RAS-related protein RAB 99.7 1.4E-16 4.8E-21 89.3 9.1 69 2-70 86-154 (191)
14 2ew1_A RAS-related protein RAB 99.7 9.1E-17 3.1E-21 91.4 8.1 69 2-70 91-159 (201)
15 2bcg_Y Protein YP2, GTP-bindin 99.7 4E-16 1.4E-20 88.2 10.2 70 2-71 73-142 (206)
16 1r2q_A RAS-related protein RAB 99.7 1.7E-16 5.8E-21 86.7 8.3 70 2-71 71-140 (170)
17 2gf9_A RAS-related protein RAB 99.7 3.3E-16 1.1E-20 87.6 9.7 70 2-71 87-156 (189)
18 3kkq_A RAS-related protein M-R 99.7 1.3E-16 4.6E-21 88.5 7.9 70 2-71 82-152 (183)
19 3c5c_A RAS-like protein 12; GD 99.7 1.2E-16 4E-21 89.7 7.7 68 4-71 86-156 (187)
20 3tkl_A RAS-related protein RAB 99.7 2.4E-16 8.1E-21 88.2 8.9 70 2-71 81-150 (196)
21 1z08_A RAS-related protein RAB 99.7 1.2E-16 4E-21 87.6 7.5 70 2-71 71-140 (170)
22 2efe_B Small GTP-binding prote 99.7 3.2E-16 1.1E-20 86.7 9.3 70 2-71 77-146 (181)
23 2fg5_A RAB-22B, RAS-related pr 99.7 2.2E-16 7.6E-21 88.7 8.6 70 2-71 88-157 (192)
24 1z0j_A RAB-22, RAS-related pro 99.7 3.7E-16 1.3E-20 85.5 9.2 70 2-71 71-140 (170)
25 2nzj_A GTP-binding protein REM 99.7 2.1E-16 7.2E-21 86.9 8.3 68 3-70 71-139 (175)
26 3cpj_B GTP-binding protein YPT 99.7 2E-16 6.7E-21 90.8 8.4 70 2-71 78-147 (223)
27 2g6b_A RAS-related protein RAB 99.7 3.3E-16 1.1E-20 86.5 8.9 69 2-70 76-144 (180)
28 2yc2_C IFT27, small RAB-relate 99.7 2.4E-16 8.3E-21 88.7 8.5 70 2-71 89-162 (208)
29 2o52_A RAS-related protein RAB 99.7 2.3E-16 7.9E-21 89.2 8.3 70 2-71 90-159 (200)
30 1m7b_A RND3/RHOE small GTP-bin 99.7 3E-16 1E-20 87.5 8.6 69 2-71 71-152 (184)
31 1z0f_A RAB14, member RAS oncog 99.7 3.4E-16 1.2E-20 86.2 8.4 69 3-71 81-149 (179)
32 1z06_A RAS-related protein RAB 99.7 3.8E-16 1.3E-20 87.3 8.7 70 2-71 86-156 (189)
33 2il1_A RAB12; G-protein, GDP, 99.7 1.7E-16 6E-21 89.2 7.3 69 3-71 92-160 (192)
34 1zbd_A Rabphilin-3A; G protein 99.7 4.8E-16 1.6E-20 87.7 9.1 70 2-71 73-142 (203)
35 2bme_A RAB4A, RAS-related prot 99.7 2.6E-16 9E-21 87.4 7.7 69 3-71 76-144 (186)
36 3oes_A GTPase rhebl1; small GT 99.7 5.8E-16 2E-20 87.5 9.1 70 2-71 88-158 (201)
37 3tw8_B RAS-related protein RAB 99.7 1.1E-15 3.6E-20 84.3 10.0 68 2-70 74-141 (181)
38 3ihw_A Centg3; RAS, centaurin, 99.7 3.8E-16 1.3E-20 87.5 7.9 66 6-71 82-150 (184)
39 1ek0_A Protein (GTP-binding pr 99.7 7.2E-16 2.5E-20 84.2 8.4 69 2-70 68-139 (170)
40 1gwn_A RHO-related GTP-binding 99.7 7.5E-16 2.6E-20 87.8 8.6 69 2-71 92-173 (205)
41 1c1y_A RAS-related protein RAP 99.7 5.3E-16 1.8E-20 84.6 7.6 70 2-71 67-137 (167)
42 2hxs_A RAB-26, RAS-related pro 99.7 4.3E-16 1.5E-20 85.9 7.3 69 2-70 72-143 (178)
43 2atx_A Small GTP binding prote 99.7 1.3E-15 4.5E-20 85.4 9.3 69 2-71 82-163 (194)
44 2y8e_A RAB-protein 6, GH09086P 99.7 6.1E-16 2.1E-20 85.2 7.7 69 2-70 79-147 (179)
45 1g16_A RAS-related protein SEC 99.7 1E-15 3.5E-20 83.7 8.5 69 2-71 68-136 (170)
46 3reg_A RHO-like small GTPase; 99.7 1E-15 3.6E-20 85.8 8.7 69 2-71 87-158 (194)
47 2atv_A RERG, RAS-like estrogen 99.7 4E-16 1.4E-20 87.8 6.7 70 2-71 91-161 (196)
48 2oil_A CATX-8, RAS-related pro 99.6 7.4E-16 2.5E-20 86.3 7.8 70 2-71 90-159 (193)
49 4djt_A GTP-binding nuclear pro 99.6 1.4E-15 4.7E-20 86.6 8.4 70 2-71 77-146 (218)
50 2fn4_A P23, RAS-related protei 99.6 1.2E-15 4.2E-20 84.1 7.8 70 2-71 73-143 (181)
51 1u8z_A RAS-related protein RAL 99.6 9.4E-16 3.2E-20 83.5 7.3 69 2-70 68-137 (168)
52 1z2a_A RAS-related protein RAB 99.6 1.4E-15 5E-20 82.9 7.8 68 2-70 70-137 (168)
53 3bc1_A RAS-related protein RAB 99.6 1.7E-15 5.8E-20 84.2 8.2 68 3-70 87-155 (195)
54 1ky3_A GTP-binding protein YPT 99.6 2.5E-15 8.6E-20 82.9 8.6 69 2-70 74-147 (182)
55 2bov_A RAla, RAS-related prote 99.6 2E-15 7E-20 84.9 8.2 69 2-70 78-147 (206)
56 2q3h_A RAS homolog gene family 99.6 2.6E-15 9E-20 84.5 8.6 68 2-70 84-164 (201)
57 3l0i_B RAS-related protein RAB 99.6 1.5E-16 5E-21 89.8 3.4 69 2-70 98-166 (199)
58 2a9k_A RAS-related protein RAL 99.6 1.9E-15 6.4E-20 83.7 7.3 70 2-71 82-152 (187)
59 2p5s_A RAS and EF-hand domain 99.6 1.2E-15 3.9E-20 86.1 6.3 68 3-70 94-167 (199)
60 3cph_A RAS-related protein SEC 99.6 5.4E-15 1.8E-19 83.7 9.1 68 2-70 85-152 (213)
61 1f6b_A SAR1; gtpases, N-termin 99.6 6.6E-15 2.3E-19 83.3 9.3 67 2-70 85-152 (198)
62 1kao_A RAP2A; GTP-binding prot 99.6 2.8E-15 9.6E-20 81.5 7.4 70 2-71 67-137 (167)
63 2j0v_A RAC-like GTP-binding pr 99.6 1.1E-15 3.6E-20 86.8 5.9 68 2-70 73-149 (212)
64 2f7s_A C25KG, RAS-related prot 99.6 1.5E-15 5E-20 86.5 6.5 69 3-71 101-170 (217)
65 1wms_A RAB-9, RAB9, RAS-relate 99.6 7.6E-15 2.6E-19 80.8 8.9 68 2-70 72-143 (177)
66 3bwd_D RAC-like GTP-binding pr 99.6 1.9E-15 6.3E-20 83.6 6.1 68 2-70 72-150 (182)
67 3c5h_A Glucocorticoid receptor 99.6 1.1E-15 3.8E-20 89.7 5.3 60 9-70 162-224 (255)
68 2gco_A H9, RHO-related GTP-bin 99.6 7.9E-15 2.7E-19 82.9 8.5 69 2-71 89-170 (201)
69 3r7w_B Gtpase2, GTP-binding pr 99.6 9.4E-16 3.2E-20 93.4 4.8 68 3-71 66-142 (331)
70 2j1l_A RHO-related GTP-binding 99.6 3.9E-15 1.3E-19 85.0 6.9 69 2-71 98-179 (214)
71 1x3s_A RAS-related protein RAB 99.6 8.8E-15 3E-19 81.6 8.1 69 2-71 80-149 (195)
72 1m2o_B GTP-binding protein SAR 99.6 1.5E-14 5.1E-19 81.3 8.9 67 2-70 83-150 (190)
73 1mh1_A RAC1; GTP-binding, GTPa 99.6 6.1E-15 2.1E-19 81.7 7.1 69 2-71 69-150 (186)
74 3t1o_A Gliding protein MGLA; G 99.6 4.3E-15 1.5E-19 82.9 6.4 67 2-71 90-162 (198)
75 1vg8_A RAS-related protein RAB 99.6 1.8E-14 6.3E-19 81.1 8.9 68 2-70 73-144 (207)
76 4gzl_A RAS-related C3 botulinu 99.6 5.5E-15 1.9E-19 83.9 6.3 69 2-71 94-175 (204)
77 2fv8_A H6, RHO-related GTP-bin 99.6 1.8E-14 6.1E-19 81.7 8.4 69 2-71 89-170 (207)
78 4dsu_A GTPase KRAS, isoform 2B 99.6 2.3E-14 7.8E-19 79.5 8.6 68 2-70 68-136 (189)
79 2erx_A GTP-binding protein DI- 99.6 5.8E-15 2E-19 80.7 6.1 68 3-70 68-137 (172)
80 3clv_A RAB5 protein, putative; 99.6 3.6E-14 1.2E-18 79.2 9.0 67 2-71 109-175 (208)
81 3con_A GTPase NRAS; structural 99.6 3.9E-14 1.3E-18 79.0 9.0 69 2-71 85-154 (190)
82 1u0l_A Probable GTPase ENGC; p 99.6 3.7E-15 1.3E-19 89.4 5.0 64 1-69 76-140 (301)
83 3llu_A RAS-related GTP-binding 99.5 1.4E-14 4.9E-19 81.5 6.5 66 4-70 90-164 (196)
84 3r7w_A Gtpase1, GTP-binding pr 99.5 1.3E-14 4.5E-19 87.2 6.3 70 2-71 73-150 (307)
85 2ce2_X GTPase HRAS; signaling 99.5 5.2E-14 1.8E-18 76.3 8.0 67 3-70 68-135 (166)
86 2zej_A Dardarin, leucine-rich 99.5 4.3E-15 1.5E-19 83.0 3.7 68 2-70 72-143 (184)
87 1azs_C GS-alpha; complex (lyas 99.5 6.9E-15 2.3E-19 91.5 4.3 59 1-59 232-301 (402)
88 1cip_A Protein (guanine nucleo 99.5 8.1E-15 2.8E-19 89.9 4.5 70 1-70 208-303 (353)
89 2xtz_A Guanine nucleotide-bind 99.5 6.6E-15 2.3E-19 90.3 4.1 58 1-58 198-266 (354)
90 3gj0_A GTP-binding nuclear pro 99.5 3.8E-14 1.3E-18 80.9 6.2 56 2-58 80-135 (221)
91 2wkq_A NPH1-1, RAS-related C3 99.5 5.7E-14 2E-18 83.9 7.1 69 2-71 219-300 (332)
92 2gf0_A GTP-binding protein DI- 99.5 6.1E-14 2.1E-18 78.5 6.7 68 2-70 72-141 (199)
93 2h57_A ADP-ribosylation factor 99.5 3.1E-13 1E-17 75.5 9.4 66 2-69 83-151 (190)
94 2f9l_A RAB11B, member RAS onco 99.5 3.5E-13 1.2E-17 76.0 9.1 70 2-71 70-139 (199)
95 1zj6_A ADP-ribosylation factor 99.5 3.1E-13 1E-17 75.3 8.3 64 2-67 76-140 (187)
96 2h17_A ADP-ribosylation factor 99.5 5.5E-13 1.9E-17 74.1 9.0 63 2-66 81-144 (181)
97 3ohm_A Guanine nucleotide-bind 99.5 5.6E-14 1.9E-18 85.5 5.3 69 1-69 182-277 (327)
98 1r8s_A ADP-ribosylation factor 99.5 3.6E-13 1.2E-17 73.3 8.0 55 3-57 61-116 (164)
99 1zcb_A G alpha I/13; GTP-bindi 99.5 5.6E-14 1.9E-18 86.4 4.9 68 2-69 217-311 (362)
100 1oix_A RAS-related protein RAB 99.5 4.6E-13 1.6E-17 75.3 8.3 70 2-71 94-163 (191)
101 1ksh_A ARF-like protein 2; sma 99.5 7.8E-13 2.7E-17 73.5 9.1 56 2-57 78-134 (186)
102 1fzq_A ADP-ribosylation factor 99.5 4.4E-13 1.5E-17 74.7 7.7 56 3-58 77-133 (181)
103 4bas_A ADP-ribosylation factor 99.5 5.4E-13 1.8E-17 74.6 8.1 56 2-57 79-142 (199)
104 2b6h_A ADP-ribosylation factor 99.4 6.9E-13 2.4E-17 74.5 8.3 56 2-57 89-145 (192)
105 3th5_A RAS-related C3 botulinu 99.2 8.4E-15 2.9E-19 82.7 0.0 68 2-70 94-174 (204)
106 4fid_A G protein alpha subunit 99.4 5.1E-14 1.7E-18 86.1 3.3 56 2-57 177-243 (340)
107 1upt_A ARL1, ADP-ribosylation 99.4 2E-13 6.9E-18 74.6 5.4 56 2-57 67-123 (171)
108 2x77_A ADP-ribosylation factor 99.4 1.7E-13 5.8E-18 76.4 4.9 56 2-57 82-138 (189)
109 1moz_A ARL1, ADP-ribosylation 99.4 1.1E-12 3.8E-17 72.5 8.1 63 2-66 78-141 (183)
110 1zd9_A ADP-ribosylation factor 99.4 1.3E-12 4.5E-17 73.0 8.2 55 2-56 83-138 (188)
111 1nrj_B SR-beta, signal recogni 99.3 1.5E-12 5.1E-17 74.0 5.4 59 3-61 72-139 (218)
112 3lvq_E ARF-GAP with SH3 domain 99.3 1.1E-11 3.8E-16 78.1 9.1 55 2-56 382-437 (497)
113 2yv5_A YJEQ protein; hydrolase 99.3 2E-12 6.8E-17 77.7 4.6 65 2-69 72-138 (302)
114 3o47_A ADP-ribosylation factor 99.3 7.7E-12 2.6E-16 75.8 7.1 56 2-57 225-281 (329)
115 2ged_A SR-beta, signal recogni 99.2 2.6E-11 8.8E-16 67.6 6.7 58 3-60 108-174 (193)
116 2fh5_B SR-beta, signal recogni 99.2 8.1E-11 2.8E-15 66.6 7.0 57 2-58 71-131 (214)
117 2qu8_A Putative nucleolar GTP- 99.2 6.9E-11 2.4E-15 67.8 6.2 58 5-63 104-163 (228)
118 2gj8_A MNME, tRNA modification 99.1 1.6E-11 5.5E-16 68.0 2.4 51 5-56 79-129 (172)
119 3dpu_A RAB family protein; roc 99.1 1.1E-10 3.6E-15 74.5 6.2 65 2-70 114-178 (535)
120 2cxx_A Probable GTP-binding pr 99.1 2.9E-11 9.8E-16 67.0 2.6 65 3-70 72-147 (190)
121 2wji_A Ferrous iron transport 99.1 1.3E-10 4.3E-15 63.8 3.7 61 3-70 73-135 (165)
122 3iev_A GTP-binding protein ERA 99.0 1E-09 3.5E-14 65.9 5.2 63 4-69 87-149 (308)
123 2lkc_A Translation initiation 98.9 4.6E-09 1.6E-13 57.5 6.4 48 2-56 71-121 (178)
124 1lnz_A SPO0B-associated GTP-bi 98.9 2.1E-09 7.2E-14 65.7 5.4 55 3-57 227-289 (342)
125 2wjg_A FEOB, ferrous iron tran 98.9 7.5E-10 2.6E-14 61.3 1.9 60 3-69 77-138 (188)
126 3l82_B F-box only protein 4; T 98.8 4.2E-09 1.4E-13 61.2 4.5 63 1-66 117-185 (227)
127 2hjg_A GTP-binding protein ENG 98.8 8.1E-09 2.8E-13 64.5 6.1 57 5-65 253-309 (436)
128 1svi_A GTP-binding protein YSX 98.8 4.9E-09 1.7E-13 58.3 4.3 55 3-61 96-153 (195)
129 4dcu_A GTP-binding protein ENG 98.8 1.6E-08 5.4E-13 63.5 6.4 62 5-70 273-334 (456)
130 2e87_A Hypothetical protein PH 98.8 2.7E-08 9.2E-13 60.7 7.1 53 6-59 243-297 (357)
131 2dyk_A GTP-binding protein; GT 98.8 1.4E-08 4.9E-13 54.6 5.2 50 4-57 74-123 (161)
132 3gee_A MNME, tRNA modification 98.8 1.1E-08 3.7E-13 64.9 5.2 55 4-60 307-361 (476)
133 3pqc_A Probable GTP-binding pr 98.8 7.9E-09 2.7E-13 57.2 4.1 62 3-70 95-163 (195)
134 3b1v_A Ferrous iron uptake tra 98.7 1.1E-08 3.7E-13 60.8 2.6 60 3-69 72-133 (272)
135 1wf3_A GTP-binding protein; GT 98.7 4.6E-08 1.6E-12 58.8 5.2 51 4-57 81-132 (301)
136 3a1s_A Iron(II) transport prot 98.6 1.7E-08 5.8E-13 59.4 2.7 52 4-61 76-129 (258)
137 3h2y_A GTPase family protein; 98.6 3.2E-08 1.1E-12 60.9 3.9 60 2-68 62-121 (368)
138 3qq5_A Small GTP-binding prote 98.6 5.2E-08 1.8E-12 61.1 4.6 58 4-69 108-165 (423)
139 3def_A T7I23.11 protein; chlor 98.6 1.7E-07 5.8E-12 55.0 5.7 55 9-64 116-173 (262)
140 1h65_A Chloroplast outer envel 98.6 1.7E-07 6E-12 55.1 5.8 57 7-64 117-176 (270)
141 1xzp_A Probable tRNA modificat 98.5 2.8E-07 9.6E-12 58.6 6.9 57 4-68 318-374 (482)
142 3iby_A Ferrous iron transport 98.5 2E-08 6.9E-13 59.0 1.3 51 3-59 75-127 (256)
143 3l2o_B F-box only protein 4; s 98.5 1.2E-07 4.1E-12 57.4 4.5 62 2-66 203-270 (312)
144 2qtf_A Protein HFLX, GTP-bindi 98.4 7.5E-07 2.6E-11 54.8 6.7 51 6-56 254-306 (364)
145 3i8s_A Ferrous iron transport 98.4 1E-07 3.5E-12 56.4 2.8 46 8-59 84-129 (274)
146 1jny_A EF-1-alpha, elongation 98.4 9.2E-08 3.1E-12 59.8 2.2 52 4-56 102-158 (435)
147 3geh_A MNME, tRNA modification 98.4 5.9E-07 2E-11 56.8 5.9 50 4-59 298-347 (462)
148 1g7s_A Translation initiation 98.4 1.1E-06 3.7E-11 57.2 6.2 48 2-56 86-136 (594)
149 1r5b_A Eukaryotic peptide chai 98.4 1.2E-07 4.2E-12 59.8 1.7 53 4-56 139-195 (467)
150 3p26_A Elongation factor 1 alp 98.4 5.7E-07 1.9E-11 56.9 4.7 60 4-65 129-194 (483)
151 4dhe_A Probable GTP-binding pr 98.3 2.6E-07 8.9E-12 52.3 2.8 51 4-58 107-160 (223)
152 2qag_A Septin-2, protein NEDD5 98.3 1E-07 3.5E-12 58.5 0.9 62 5-70 128-204 (361)
153 3ec1_A YQEH GTPase; atnos1, at 98.3 2.2E-07 7.7E-12 57.1 2.3 48 3-56 65-112 (369)
154 1mky_A Probable GTP-binding pr 98.3 1.3E-06 4.4E-11 54.6 5.8 48 3-56 75-124 (439)
155 3lxx_A GTPase IMAP family memb 98.3 4.4E-07 1.5E-11 52.3 3.4 54 5-60 108-163 (239)
156 2ywe_A GTP-binding protein LEP 98.3 3.8E-06 1.3E-10 54.7 7.5 50 4-57 91-140 (600)
157 2hjg_A GTP-binding protein ENG 98.3 1.2E-06 4E-11 54.8 4.9 50 3-56 76-125 (436)
158 3cb4_D GTP-binding protein LEP 98.3 2.2E-06 7.5E-11 55.8 6.3 50 4-57 89-138 (599)
159 3k53_A Ferrous iron transport 98.3 3.9E-07 1.3E-11 53.6 2.4 52 4-60 74-127 (271)
160 1mky_A Probable GTP-binding pr 98.2 3.5E-06 1.2E-10 52.7 6.5 57 5-65 259-315 (439)
161 3sjy_A Translation initiation 98.2 2E-06 6.8E-11 53.3 5.2 52 4-57 93-144 (403)
162 2j69_A Bacterial dynamin-like 98.2 1.3E-06 4.4E-11 57.6 4.4 53 3-58 194-246 (695)
163 3t34_A Dynamin-related protein 98.2 9.6E-07 3.3E-11 53.9 3.3 60 3-64 166-225 (360)
164 2xtp_A GTPase IMAP family memb 98.2 3.8E-06 1.3E-10 48.8 5.6 51 6-56 102-153 (260)
165 2aka_B Dynamin-1; fusion prote 98.2 2.3E-06 7.7E-11 50.5 4.3 54 3-59 155-209 (299)
166 1n0u_A EF-2, elongation factor 98.2 3.8E-06 1.3E-10 56.4 5.5 59 3-65 115-174 (842)
167 3tr5_A RF-3, peptide chain rel 98.2 8.1E-06 2.8E-10 52.4 6.8 49 4-56 100-148 (528)
168 3izq_1 HBS1P, elongation facto 98.1 1.4E-06 4.8E-11 56.7 3.1 55 4-58 263-321 (611)
169 1s0u_A EIF-2-gamma, translatio 98.1 1.4E-05 4.8E-10 49.6 7.1 58 7-70 102-165 (408)
170 2c78_A Elongation factor TU-A; 98.1 4.1E-06 1.4E-10 51.8 4.5 49 4-56 93-142 (405)
171 3izy_P Translation initiation 98.1 2.1E-06 7.1E-11 55.3 3.1 51 2-56 68-118 (537)
172 1d2e_A Elongation factor TU (E 98.1 6.8E-06 2.3E-10 50.8 5.3 49 4-56 84-133 (397)
173 2qpt_A EH domain-containing pr 98.1 1.1E-06 3.8E-11 56.6 1.7 51 4-57 183-233 (550)
174 1ega_A Protein (GTP-binding pr 98.0 8.1E-06 2.8E-10 48.9 5.0 61 4-69 83-143 (301)
175 3j2k_7 ERF3, eukaryotic polype 98.0 5.2E-06 1.8E-10 52.1 3.8 52 4-55 113-168 (439)
176 2elf_A Protein translation elo 98.0 5.3E-06 1.8E-10 51.1 3.8 59 5-69 79-141 (370)
177 1zo1_I IF2, translation initia 98.0 1.8E-05 6.1E-10 50.7 6.1 48 2-56 67-117 (501)
178 1zun_B Sulfate adenylate trans 98.0 2.3E-05 7.8E-10 49.0 6.5 50 4-56 122-171 (434)
179 1f60_A Elongation factor EEF1A 98.0 3E-06 1E-10 53.4 2.2 50 4-56 103-159 (458)
180 4dcu_A GTP-binding protein ENG 97.9 8.4E-06 2.9E-10 51.2 3.7 50 3-56 96-145 (456)
181 1dar_A EF-G, elongation factor 97.9 2E-05 6.9E-10 52.0 5.6 49 4-56 95-143 (691)
182 2qag_C Septin-7; cell cycle, c 97.9 9.7E-06 3.3E-10 50.8 3.8 64 2-69 129-196 (418)
183 3lxw_A GTPase IMAP family memb 97.9 1.6E-05 5.6E-10 46.3 4.5 48 7-56 103-153 (247)
184 1wb1_A Translation elongation 97.9 2.5E-05 8.7E-10 49.6 5.5 46 4-56 91-139 (482)
185 1kk1_A EIF2gamma; initiation o 97.8 4.5E-05 1.6E-09 47.3 6.0 57 7-69 104-166 (410)
186 2xex_A Elongation factor G; GT 97.8 3.2E-05 1.1E-09 51.0 5.4 49 4-56 93-141 (693)
187 1jwy_B Dynamin A GTPase domain 97.8 2.1E-05 7.2E-10 46.7 4.2 53 4-59 162-215 (315)
188 3avx_A Elongation factor TS, e 97.8 3.1E-05 1.1E-09 54.1 4.7 49 4-56 377-426 (1289)
189 2rdo_7 EF-G, elongation factor 97.8 7.5E-05 2.6E-09 49.4 6.2 50 4-57 100-149 (704)
190 2h5e_A Peptide chain release f 97.7 8.7E-05 3E-09 47.7 6.2 50 4-57 100-149 (529)
191 1puj_A YLQF, conserved hypothe 97.6 6.4E-05 2.2E-09 44.8 3.5 44 5-56 19-64 (282)
192 1udx_A The GTP-binding protein 97.5 0.00023 7.9E-09 44.6 5.4 48 8-56 234-283 (416)
193 2dy1_A Elongation factor G; tr 97.5 0.00027 9.2E-09 46.5 5.6 48 4-55 92-139 (665)
194 1wxq_A GTP-binding protein; st 97.4 0.00018 6.3E-09 44.7 3.8 18 5-22 97-114 (397)
195 1pui_A ENGB, probable GTP-bind 97.3 0.00059 2E-08 38.0 4.8 43 8-56 107-151 (210)
196 3mca_A HBS1, elongation factor 97.2 1.1E-05 3.9E-10 52.3 -2.7 46 4-56 273-329 (592)
197 2x2e_A Dynamin-1; nitration, h 97.2 0.00041 1.4E-08 42.2 3.7 53 3-57 160-212 (353)
198 1t9h_A YLOQ, probable GTPase E 97.1 0.0016 5.5E-08 39.4 5.6 49 6-57 83-132 (307)
199 2wsm_A Hydrogenase expression/ 97.1 0.00049 1.7E-08 38.7 3.1 54 8-69 128-181 (221)
200 3t5d_A Septin-7; GTP-binding p 97.0 0.00081 2.8E-08 39.5 3.6 43 10-56 116-158 (274)
201 3cnl_A YLQF, putative uncharac 96.7 0.00043 1.5E-08 40.8 0.9 42 5-56 17-60 (262)
202 2rcn_A Probable GTPase ENGC; Y 96.4 0.011 3.7E-07 36.5 5.6 47 7-56 128-174 (358)
203 2qnr_A Septin-2, protein NEDD5 96.2 0.00092 3.1E-08 40.0 0.3 44 24-70 140-185 (301)
204 1yrb_A ATP(GTP)binding protein 96.0 0.0076 2.6E-07 34.7 3.6 48 7-57 136-186 (262)
205 2hf9_A Probable hydrogenase ni 95.9 0.0027 9.2E-08 35.8 1.4 28 43-70 165-192 (226)
206 1jal_A YCHF protein; nucleotid 95.7 0.11 3.7E-06 32.2 7.9 16 6-21 93-108 (363)
207 3p32_A Probable GTPase RV1496/ 95.2 0.0024 8.3E-08 38.9 -0.7 42 7-56 190-231 (355)
208 3vqt_A RF-3, peptide chain rel 95.2 0.088 3E-06 34.1 6.4 46 7-56 121-166 (548)
209 2p67_A LAO/AO transport system 94.7 0.0068 2.3E-07 36.8 0.5 43 6-56 166-208 (341)
210 3zvr_A Dynamin-1; hydrolase, D 94.5 0.063 2.1E-06 36.3 4.6 47 8-57 186-232 (772)
211 2www_A Methylmalonic aciduria 94.3 0.045 1.5E-06 33.4 3.4 43 6-56 184-226 (349)
212 4fn5_A EF-G 1, elongation fact 93.5 0.2 6.8E-06 33.3 5.5 46 7-56 106-151 (709)
213 3j25_A Tetracycline resistance 90.5 0.26 9E-06 32.4 3.4 46 7-56 88-133 (638)
214 4a9a_A Ribosome-interacting GT 90.3 0.65 2.2E-05 28.8 4.9 48 6-55 146-195 (376)
215 1bif_A 6-phosphofructo-2-kinas 87.9 0.088 3E-06 33.2 -0.3 34 4-38 115-148 (469)
216 2qm8_A GTPase/ATPase; G protei 86.3 0.52 1.8E-05 28.6 2.5 41 7-55 166-206 (337)
217 4dzz_A Plasmid partitioning pr 83.7 3.7 0.00013 22.3 5.1 47 7-55 95-143 (206)
218 3k9g_A PF-32 protein; ssgcid, 80.6 6 0.00021 22.6 5.7 46 6-53 163-208 (267)
219 3ea0_A ATPase, para family; al 79.0 6.5 0.00022 21.9 8.2 58 6-66 137-194 (245)
220 2ohf_A Protein OLA1, GTP-bindi 78.8 0.99 3.4E-05 28.3 1.7 24 4-27 111-134 (396)
221 2yvt_A Hypothetical protein AQ 77.2 5.5 0.00019 22.4 4.5 18 8-25 31-48 (260)
222 2dby_A GTP-binding protein; GD 69.9 9 0.00031 23.6 4.4 16 6-21 96-111 (368)
223 3cwq_A Para family chromosome 68.6 13 0.00043 20.6 6.0 47 6-55 87-133 (209)
224 3sf4_D Protein inscuteable hom 68.1 6.8 0.00023 17.3 3.7 30 26-55 9-38 (52)
225 3rl5_A Metallophosphoesterase 65.2 3.9 0.00013 24.6 2.0 45 8-54 78-122 (296)
226 3sop_A Neuronal-specific septi 63.7 19 0.00067 21.0 5.1 42 9-55 111-153 (270)
227 3ktb_A Arsenical resistance op 63.5 6.6 0.00023 20.2 2.5 58 11-69 43-101 (106)
228 3ro3_B Minsc, peptide of prote 61.8 5.9 0.0002 14.3 1.9 14 25-38 7-20 (22)
229 3kgk_A Arsenical resistance op 61.4 8.5 0.00029 19.9 2.7 58 11-69 40-98 (110)
230 2ark_A Flavodoxin; FMN, struct 61.3 17 0.00059 19.6 4.1 44 7-50 50-96 (188)
231 1uf3_A Hypothetical protein TT 61.2 15 0.00052 19.9 3.9 40 9-51 32-73 (228)
232 3ezx_A MMCP 1, monomethylamine 60.9 20 0.0007 20.3 5.0 42 9-50 143-185 (215)
233 2ivy_A Hypothetical protein SS 60.3 15 0.0005 18.4 3.5 19 11-29 3-21 (101)
234 3q9l_A Septum site-determining 59.9 21 0.00071 20.0 4.7 49 6-55 132-186 (260)
235 1zpw_X Hypothetical protein TT 59.4 14 0.00049 18.0 3.7 18 12-29 5-22 (90)
236 2vzf_A NADH-dependent FMN redu 58.9 7.4 0.00025 21.4 2.4 15 7-21 67-81 (197)
237 3end_A Light-independent proto 58.3 25 0.00085 20.5 7.6 49 5-54 175-225 (307)
238 2xmo_A LMO2642 protein; phosph 56.1 15 0.0005 22.7 3.5 41 8-51 91-135 (443)
239 2yxb_A Coenzyme B12-dependent 55.8 22 0.00076 19.1 4.8 40 9-50 69-108 (161)
240 3exc_X Uncharacterized protein 55.1 18 0.00061 17.8 3.8 20 11-30 4-23 (91)
241 3gfs_A FMN-dependent NADPH-azo 55.1 6.9 0.00024 21.0 1.8 12 8-19 62-73 (174)
242 2ph1_A Nucleotide-binding prot 54.6 28 0.00094 19.8 4.8 42 9-54 152-194 (262)
243 2qag_B Septin-6, protein NEDD5 54.1 39 0.0013 21.4 5.6 15 41-55 175-189 (427)
244 3k1y_A Oxidoreductase; structu 53.8 18 0.00063 20.0 3.4 44 7-50 83-126 (191)
245 2fz5_A Flavodoxin; alpha/beta 53.6 20 0.00069 17.9 3.7 44 7-51 44-89 (137)
246 3kjh_A CO dehydrogenase/acetyl 53.0 27 0.00092 19.2 5.8 46 6-54 150-195 (254)
247 1ccw_A Protein (glutamate muta 52.2 24 0.00081 18.4 4.0 40 9-50 54-93 (137)
248 3dz1_A Dihydrodipicolinate syn 52.0 23 0.0008 21.2 3.9 39 9-48 102-140 (313)
249 2q9u_A A-type flavoprotein; fl 51.9 35 0.0012 20.8 4.7 45 7-51 305-350 (414)
250 4hs4_A Chromate reductase; tri 51.9 25 0.00086 19.5 3.8 11 8-18 72-82 (199)
251 2j37_W Signal recognition part 51.0 36 0.0012 22.0 4.8 41 9-56 213-254 (504)
252 2kpo_A Rossmann 2X2 fold prote 49.8 23 0.00078 17.4 3.2 43 27-70 37-94 (110)
253 2oze_A ORF delta'; para, walke 48.0 38 0.0013 19.5 6.0 47 8-55 175-225 (298)
254 3h8d_A Myosin-VI; myosin VI, m 46.9 17 0.00059 19.5 2.4 24 40-64 56-79 (141)
255 1uoz_A Putative cellulase; hyd 46.6 48 0.0017 20.3 4.6 38 10-48 90-137 (315)
256 1xx6_A Thymidine kinase; NESG, 46.5 35 0.0012 18.9 3.8 39 32-70 98-136 (191)
257 1wcv_1 SOJ, segregation protei 46.4 38 0.0013 19.1 7.0 48 7-55 131-182 (257)
258 5nul_A Flavodoxin; electron tr 46.0 29 0.00098 17.5 3.9 43 7-50 43-87 (138)
259 2a5l_A Trp repressor binding p 45.3 35 0.0012 18.3 4.2 45 7-51 69-117 (200)
260 4h7p_A Malate dehydrogenase; s 44.9 23 0.00079 21.7 3.1 48 7-54 98-155 (345)
261 3bfv_A CAPA1, CAPB2, membrane 44.4 45 0.0015 19.3 4.4 46 7-56 212-258 (271)
262 4dvc_A Thiol:disulfide interch 44.1 34 0.0012 17.9 4.4 41 28-68 136-176 (184)
263 2ky6_A Mediator of RNA polymer 44.0 41 0.0014 18.7 3.7 30 5-34 76-105 (166)
264 1rtt_A Conserved hypothetical 43.6 18 0.0006 19.6 2.3 6 10-15 73-78 (193)
265 2wkj_A N-acetylneuraminate lya 43.3 49 0.0017 19.7 4.3 41 8-49 105-145 (303)
266 3oq2_A Crispr-associated prote 42.0 31 0.0011 17.3 2.9 12 11-22 8-19 (103)
267 2j9r_A Thymidine kinase; TK1, 41.3 49 0.0017 18.9 4.0 38 33-70 119-156 (214)
268 1t0i_A YLR011WP; FMN binding p 41.1 36 0.0012 18.2 3.3 29 7-35 82-110 (191)
269 1y80_A Predicted cobalamin bin 40.8 46 0.0016 18.4 4.4 43 9-53 139-182 (210)
270 1rli_A Trp repressor binding p 40.7 40 0.0014 17.8 3.4 30 6-35 68-97 (184)
271 2ohh_A Type A flavoprotein FPR 40.6 24 0.00083 21.3 2.8 44 7-50 305-351 (404)
272 3daq_A DHDPS, dihydrodipicolin 40.1 57 0.002 19.3 4.3 38 9-48 97-134 (292)
273 1sqs_A Conserved hypothetical 39.8 48 0.0016 18.7 3.8 29 7-35 77-105 (242)
274 2b8t_A Thymidine kinase; deoxy 39.8 51 0.0017 18.8 3.9 30 41-70 115-144 (223)
275 3ib7_A ICC protein; metallopho 39.6 28 0.00095 20.2 2.8 41 8-50 65-109 (330)
276 3p7m_A Malate dehydrogenase; p 39.3 33 0.0011 20.7 3.1 49 5-54 69-127 (321)
277 3hxl_A Uncharacterized protein 39.1 72 0.0024 20.4 4.7 37 14-51 202-238 (446)
278 3eb2_A Putative dihydrodipicol 39.1 60 0.0021 19.3 4.8 58 8-69 98-155 (300)
279 3qze_A DHDPS, dihydrodipicolin 38.7 63 0.0022 19.4 4.5 39 8-48 117-155 (314)
280 3m5v_A DHDPS, dihydrodipicolin 38.6 62 0.0021 19.2 4.4 39 8-48 102-140 (301)
281 2d3d_A VTS1 protein; RNA bindi 37.9 4.8 0.00017 20.0 -0.5 18 19-36 12-29 (88)
282 3fvw_A Putative NAD(P)H-depend 37.5 41 0.0014 18.3 3.2 45 7-51 65-119 (192)
283 3tak_A DHDPS, dihydrodipicolin 37.4 64 0.0022 19.0 4.5 39 8-48 95-133 (291)
284 2qsj_A DNA-binding response re 37.2 41 0.0014 16.8 3.3 39 10-53 51-89 (154)
285 1qkk_A DCTD, C4-dicarboxylate 37.1 42 0.0014 16.9 4.3 39 10-53 48-86 (155)
286 2pd2_A Hypothetical protein ST 37.0 39 0.0013 16.5 5.3 33 15-48 3-35 (108)
287 4e6n_A Metallophosphoesterase; 36.8 60 0.002 20.7 4.0 28 14-41 299-326 (427)
288 1hyq_A MIND, cell division inh 36.7 57 0.0019 18.3 5.5 46 7-55 130-175 (263)
289 3b6i_A Flavoprotein WRBA; flav 36.6 35 0.0012 18.3 2.8 30 6-35 65-94 (198)
290 3l21_A DHDPS, dihydrodipicolin 36.5 60 0.002 19.4 4.0 39 8-48 109-147 (304)
291 3svl_A Protein YIEF; E. coli C 36.4 55 0.0019 18.0 4.1 12 8-19 71-82 (193)
292 2zki_A 199AA long hypothetical 36.4 51 0.0018 17.7 3.9 44 7-50 68-115 (199)
293 2i0x_A Hypothetical protein PF 36.1 38 0.0013 16.3 2.6 9 13-21 3-11 (85)
294 3hdv_A Response regulator; PSI 36.0 41 0.0014 16.4 3.5 41 10-54 53-93 (136)
295 1oju_A MDH, malate dehydrogena 35.9 32 0.0011 20.5 2.7 48 6-54 66-123 (294)
296 7mdh_A Protein (malate dehydro 35.9 48 0.0016 20.7 3.5 49 6-54 105-163 (375)
297 3si9_A DHDPS, dihydrodipicolin 35.9 71 0.0024 19.2 4.4 39 8-48 116-154 (315)
298 3flu_A DHDPS, dihydrodipicolin 35.8 69 0.0024 19.0 4.5 39 8-48 101-139 (297)
299 3b4u_A Dihydrodipicolinate syn 35.8 58 0.002 19.3 3.8 60 8-69 97-158 (294)
300 2vc6_A MOSA, dihydrodipicolina 35.5 69 0.0024 18.9 4.5 39 8-48 94-132 (292)
301 3hhp_A Malate dehydrogenase; M 35.2 74 0.0025 19.1 4.3 48 6-54 66-123 (312)
302 1xky_A Dihydrodipicolinate syn 35.1 72 0.0025 19.0 4.4 39 8-48 106-144 (301)
303 3e96_A Dihydrodipicolinate syn 35.1 73 0.0025 19.1 5.2 53 9-69 106-158 (316)
304 2ehh_A DHDPS, dihydrodipicolin 34.7 72 0.0025 18.8 4.5 39 8-48 94-132 (294)
305 3nep_X Malate dehydrogenase; h 34.6 36 0.0012 20.5 2.8 49 5-54 65-123 (314)
306 2fcr_A Flavodoxin; electron tr 34.5 54 0.0018 17.4 3.3 44 7-50 43-92 (173)
307 1dfm_A Endonuclease bglii; res 34.4 70 0.0024 18.6 4.4 34 23-56 143-176 (223)
308 2yxg_A DHDPS, dihydrodipicolin 34.3 72 0.0025 18.8 4.5 39 8-48 94-132 (289)
309 2es6_A VTS1P; SAM domain, prot 34.1 6.9 0.00024 20.0 -0.3 19 18-36 24-42 (101)
310 3tl2_A Malate dehydrogenase; c 33.9 45 0.0015 20.0 3.1 49 5-54 74-132 (315)
311 1o5k_A DHDPS, dihydrodipicolin 33.9 76 0.0026 18.9 4.2 58 8-69 106-163 (306)
312 3jte_A Response regulator rece 33.9 46 0.0016 16.3 5.2 41 9-54 49-89 (143)
313 1w3i_A EDA, 2-keto-3-deoxy glu 33.5 76 0.0026 18.7 4.6 39 8-48 90-129 (293)
314 3cpr_A Dihydrodipicolinate syn 33.2 78 0.0027 18.8 4.5 39 8-48 110-148 (304)
315 5mdh_A Malate dehydrogenase; o 32.8 48 0.0016 20.1 3.1 48 7-54 77-134 (333)
316 2m1z_A LMO0427 protein; homolo 32.7 28 0.00096 17.7 1.8 24 2-25 50-75 (106)
317 2nuw_A 2-keto-3-deoxygluconate 32.7 76 0.0026 18.7 4.0 38 9-48 91-129 (288)
318 2r91_A 2-keto-3-deoxy-(6-phosp 32.7 76 0.0026 18.6 4.0 39 8-48 89-128 (286)
319 2ojp_A DHDPS, dihydrodipicolin 32.6 78 0.0027 18.6 4.2 38 9-48 96-133 (292)
320 1ag9_A Flavodoxin; electron tr 32.5 60 0.002 17.3 3.5 44 7-50 43-87 (175)
321 3cg0_A Response regulator rece 32.5 48 0.0016 16.1 4.8 38 10-53 55-93 (140)
322 2v9d_A YAGE; dihydrodipicolini 32.4 87 0.003 19.1 4.3 39 8-48 125-163 (343)
323 2r8w_A AGR_C_1641P; APC7498, d 32.4 74 0.0025 19.3 3.9 38 9-48 129-166 (332)
324 3jy6_A Transcriptional regulat 32.2 69 0.0024 17.9 3.9 36 8-54 62-97 (276)
325 2i2x_B MTAC, methyltransferase 31.9 75 0.0026 18.4 3.8 41 9-52 174-214 (258)
326 2rfg_A Dihydrodipicolinate syn 31.9 79 0.0027 18.7 3.9 39 8-48 94-132 (297)
327 2zay_A Response regulator rece 31.9 51 0.0017 16.3 4.1 41 9-53 52-93 (147)
328 1f6k_A N-acetylneuraminate lya 31.8 81 0.0028 18.6 4.2 39 8-48 98-136 (293)
329 2vyc_A Biodegradative arginine 31.7 1.2E+02 0.0041 20.5 5.4 43 10-53 54-96 (755)
330 3d0c_A Dihydrodipicolinate syn 31.7 85 0.0029 18.8 5.6 54 8-69 105-158 (314)
331 3eul_A Possible nitrate/nitrit 31.2 54 0.0018 16.4 4.1 40 9-53 61-100 (152)
332 2v6b_A L-LDH, L-lactate dehydr 30.9 85 0.0029 18.5 4.1 48 6-54 64-121 (304)
333 3e2i_A Thymidine kinase; Zn-bi 30.7 81 0.0028 18.2 4.4 29 41-69 127-155 (219)
334 4ehx_A Tetraacyldisaccharide 4 30.6 24 0.00083 21.2 1.6 12 41-52 34-45 (315)
335 3rui_B Autophagy-related prote 30.4 50 0.0017 17.1 2.6 36 20-55 8-44 (118)
336 3na8_A Putative dihydrodipicol 30.3 85 0.0029 18.8 3.9 40 8-49 118-157 (315)
337 3kcn_A Adenylate cyclase homol 30.0 57 0.002 16.3 3.9 38 11-53 50-87 (151)
338 3eod_A Protein HNR; response r 29.9 52 0.0018 15.8 4.1 40 10-54 52-91 (130)
339 3hdg_A Uncharacterized protein 29.8 54 0.0019 15.9 3.4 40 9-53 51-90 (137)
340 1g3q_A MIND ATPase, cell divis 29.7 73 0.0025 17.4 7.5 48 6-56 130-177 (237)
341 1eo6_A GATE-16, golgi-associat 29.6 58 0.002 16.7 2.8 32 23-54 9-41 (117)
342 4ebb_A Dipeptidyl peptidase 2; 29.5 85 0.0029 19.9 4.0 32 19-50 103-135 (472)
343 3u7r_A NADPH-dependent FMN red 29.4 53 0.0018 18.1 2.8 10 7-16 65-74 (190)
344 1obo_A Flavodoxin; electron tr 29.2 67 0.0023 16.8 3.2 44 7-50 44-88 (169)
345 1t5b_A Acyl carrier protein ph 29.1 61 0.0021 17.3 3.0 30 7-36 84-113 (201)
346 3hzh_A Chemotaxis response reg 29.0 62 0.0021 16.3 3.8 40 10-54 84-123 (157)
347 2pjd_A Ribosomal RNA small sub 29.0 95 0.0032 18.5 4.6 41 9-53 76-116 (343)
348 2q62_A ARSH; alpha/beta, flavo 28.9 47 0.0016 19.2 2.6 14 8-21 97-110 (247)
349 3hv2_A Response regulator/HD d 28.9 61 0.0021 16.2 4.6 40 9-53 58-97 (153)
350 4dad_A Putative pilus assembly 28.8 59 0.002 16.0 5.3 40 9-53 67-106 (146)
351 2d4a_B Malate dehydrogenase; a 28.7 96 0.0033 18.4 4.5 48 6-54 64-121 (308)
352 3hcw_A Maltose operon transcri 28.6 73 0.0025 18.1 3.4 37 8-54 67-103 (295)
353 4es1_A BH0342 protein; ferredo 28.4 62 0.0021 16.2 3.6 11 12-22 6-16 (100)
354 2b6g_A VTS1P; alpha-helix, pen 28.4 16 0.00055 19.2 0.5 18 19-36 43-60 (119)
355 3cz5_A Two-component response 28.3 62 0.0021 16.1 4.4 39 10-53 52-90 (153)
356 2ewd_A Lactate dehydrogenase,; 28.1 96 0.0033 18.3 4.6 47 7-54 70-126 (317)
357 2rjn_A Response regulator rece 28.1 63 0.0022 16.1 4.0 39 10-53 52-90 (154)
358 2r2q_A Gamma-aminobutyric acid 27.9 66 0.0022 16.3 2.8 28 23-50 8-35 (110)
359 2pcq_A Putative dihydrodipicol 27.8 53 0.0018 19.3 2.7 37 8-48 87-124 (283)
360 2zjd_A Microtubule-associated 27.7 65 0.0022 17.0 2.8 31 23-53 16-47 (130)
361 1wls_A L-asparaginase; structu 27.7 1.1E+02 0.0036 18.6 4.7 46 6-56 70-115 (328)
362 2xzm_U Ribosomal protein L7AE 27.6 55 0.0019 17.0 2.5 41 9-55 40-80 (126)
363 1e5d_A Rubredoxin\:oxygen oxid 27.5 1E+02 0.0036 18.4 4.7 43 8-50 302-344 (402)
364 4e7p_A Response regulator; DNA 27.5 64 0.0022 16.0 3.9 39 10-53 67-105 (150)
365 3d03_A Phosphohydrolase; glyce 27.5 58 0.002 18.1 2.8 40 9-51 41-81 (274)
366 3dmg_A Probable ribosomal RNA 27.1 1.1E+02 0.0039 18.7 4.2 36 19-54 109-144 (381)
367 3snk_A Response regulator CHEY 27.0 62 0.0021 15.7 4.1 40 9-53 59-98 (135)
368 3f6c_A Positive transcription 27.0 61 0.0021 15.6 4.4 40 10-54 47-86 (134)
369 1ydg_A Trp repressor binding p 26.7 70 0.0024 17.4 3.0 30 7-36 76-105 (211)
370 3b2n_A Uncharacterized protein 26.6 63 0.0022 15.7 4.3 39 10-53 50-88 (133)
371 3gbv_A Putative LACI-family tr 26.5 49 0.0017 18.6 2.4 38 8-53 68-105 (304)
372 2zqz_A L-LDH, L-lactate dehydr 26.2 1E+02 0.0036 18.5 3.8 48 6-54 73-130 (326)
373 3gv0_A Transcriptional regulat 26.0 94 0.0032 17.5 4.0 36 8-53 65-100 (288)
374 3l6u_A ABC-type sugar transpor 25.9 55 0.0019 18.4 2.5 39 8-54 63-101 (293)
375 3h9d_A ATG8, microtubule-assoc 25.7 75 0.0026 16.5 2.8 32 23-54 12-44 (119)
376 3m95_A Autophagy related prote 25.7 75 0.0026 16.7 2.8 33 22-54 16-49 (125)
377 3fni_A Putative diflavin flavo 25.6 82 0.0028 16.6 4.5 42 8-51 55-96 (159)
378 4pga_A Glutaminase-asparaginas 25.5 1.2E+02 0.0041 18.5 4.7 44 7-56 88-131 (337)
379 3hly_A Flavodoxin-like domain; 25.4 82 0.0028 16.5 4.2 42 8-51 50-91 (161)
380 2him_A L-asparaginase 1; hydro 25.3 1.3E+02 0.0043 18.6 4.3 45 7-56 99-143 (358)
381 3f6r_A Flavodoxin; FMN binding 25.2 62 0.0021 16.4 2.5 42 9-50 49-93 (148)
382 3hz7_A Uncharacterized protein 25.1 67 0.0023 15.4 3.0 24 12-35 29-52 (87)
383 2qr3_A Two-component system re 24.9 69 0.0024 15.5 3.4 13 41-53 79-91 (140)
384 3gvi_A Malate dehydrogenase; N 24.8 1.2E+02 0.0041 18.3 4.5 49 5-54 71-129 (324)
385 1y6j_A L-lactate dehydrogenase 24.6 1.2E+02 0.004 18.1 4.2 47 7-54 72-128 (318)
386 3gt7_A Sensor protein; structu 24.5 77 0.0026 15.9 4.7 40 10-53 52-92 (154)
387 1f4p_A Flavodoxin; electron tr 24.4 30 0.001 17.7 1.1 10 10-19 49-58 (147)
388 3n75_A LDC, lysine decarboxyla 24.2 1.3E+02 0.0043 20.5 4.2 39 9-53 49-87 (715)
389 2bog_X Endoglucanase E-2; hydr 24.1 1.2E+02 0.0042 18.3 3.8 37 11-48 67-113 (286)
390 4fe7_A Xylose operon regulator 24.1 1.3E+02 0.0043 18.2 5.1 34 8-53 75-108 (412)
391 1ez4_A Lactate dehydrogenase; 24.0 1.1E+02 0.0039 18.2 3.7 48 6-54 69-126 (318)
392 2kkm_A Translation machinery-a 23.6 39 0.0013 18.1 1.4 19 14-32 100-118 (144)
393 3d7n_A Flavodoxin, WRBA-like p 23.6 96 0.0033 16.7 3.2 13 7-19 52-64 (193)
394 3h75_A Periplasmic sugar-bindi 23.3 1.2E+02 0.0041 17.7 4.0 37 9-54 62-98 (350)
395 3av0_A DNA double-strand break 23.3 70 0.0024 19.5 2.7 43 8-50 59-104 (386)
396 3nhm_A Response regulator; pro 23.2 74 0.0025 15.3 3.9 40 10-53 48-88 (133)
397 3k4h_A Putative transcriptiona 23.2 89 0.0031 17.5 3.0 37 8-54 68-104 (292)
398 3kto_A Response regulator rece 23.2 77 0.0026 15.4 3.2 21 33-54 72-92 (136)
399 2rdm_A Response regulator rece 23.0 74 0.0025 15.2 5.0 41 9-54 50-91 (132)
400 3szr_A Interferon-induced GTP- 22.9 61 0.0021 21.3 2.5 49 5-56 179-228 (608)
401 3m6m_D Sensory/regulatory prot 22.8 81 0.0028 15.6 5.2 43 10-53 59-101 (143)
402 1ldn_A L-lactate dehydrogenase 22.8 1.3E+02 0.0044 17.9 4.4 48 6-54 71-128 (316)
403 1ycg_A Nitric oxide reductase; 22.7 81 0.0028 18.9 2.9 43 8-50 301-343 (398)
404 3skv_A SSFX3; jelly roll, GDSL 22.7 1.1E+02 0.0038 18.9 3.5 42 9-51 244-292 (385)
405 3ldh_A Lactate dehydrogenase; 22.4 94 0.0032 18.9 3.1 47 7-54 87-143 (330)
406 3cg4_A Response regulator rece 22.4 80 0.0027 15.3 4.3 41 10-54 52-93 (142)
407 3qk7_A Transcriptional regulat 22.4 1.2E+02 0.004 17.2 3.5 36 8-53 64-99 (294)
408 3egc_A Putative ribose operon 22.3 99 0.0034 17.3 3.1 14 40-53 85-98 (291)
409 2f6u_A GGGPS, (S)-3-O-geranylg 22.3 1.2E+02 0.0042 17.5 3.5 39 8-51 32-70 (234)
410 3s2y_A Chromate reductase; ura 27.9 19 0.00064 20.0 0.0 12 7-18 71-82 (199)
411 3huu_A Transcription regulator 22.2 91 0.0031 17.7 3.0 36 8-53 82-117 (305)
412 1yob_A Flavodoxin 2, flavodoxi 22.1 1E+02 0.0034 16.4 3.4 44 7-50 44-96 (179)
413 2hsj_A Putative platelet activ 22.0 1E+02 0.0034 16.4 3.5 41 9-50 85-132 (214)
414 1k68_A Phytochrome response re 21.6 80 0.0028 15.1 2.9 41 9-53 55-96 (140)
415 3fkr_A L-2-keto-3-deoxyarabona 21.6 1.1E+02 0.0038 18.2 3.3 57 9-70 103-162 (309)
416 3m9w_A D-xylose-binding peripl 21.6 1.2E+02 0.0041 17.3 3.4 14 41-54 82-95 (313)
417 1ii7_A MRE11 nuclease; RAD50, 21.5 1.4E+02 0.0046 17.7 4.6 46 8-54 39-87 (333)
418 1egw_A MADS box transcription 21.4 58 0.002 15.5 1.7 16 7-22 37-52 (77)
419 2b4a_A BH3024; flavodoxin-like 21.4 84 0.0029 15.2 3.4 40 9-53 60-100 (138)
420 3hs3_A Ribose operon repressor 21.3 32 0.0011 19.4 0.9 13 41-53 84-97 (277)
421 8abp_A L-arabinose-binding pro 21.1 1E+02 0.0035 17.4 3.0 36 8-51 56-91 (306)
422 3ha2_A NADPH-quinone reductase 21.1 1.1E+02 0.0039 16.6 3.1 30 6-35 48-77 (177)
423 3eqz_A Response regulator; str 21.0 83 0.0028 15.0 4.3 39 10-53 47-85 (135)
424 3i42_A Response regulator rece 20.9 83 0.0028 14.9 4.7 42 9-54 47-89 (127)
425 1srr_A SPO0F, sporulation resp 20.8 82 0.0028 14.9 5.2 39 10-53 48-86 (124)
426 3h5d_A DHDPS, dihydrodipicolin 20.8 1.5E+02 0.005 17.8 4.2 38 9-48 102-140 (311)
427 3ilh_A Two component response 20.5 89 0.003 15.2 4.2 41 9-53 60-103 (146)
428 3kht_A Response regulator; PSI 20.4 79 0.0027 15.5 2.2 40 10-53 52-92 (144)
429 3gl9_A Response regulator; bet 20.3 86 0.003 14.9 3.8 40 10-53 47-87 (122)
430 1czn_A Flavodoxin; FMN binding 20.3 58 0.002 17.0 1.7 13 7-19 44-56 (169)
431 2hpv_A FMN-dependent NADH-azor 20.3 87 0.003 16.9 2.5 31 7-37 92-122 (208)
432 3lua_A Response regulator rece 20.2 91 0.0031 15.1 3.5 40 10-53 51-92 (140)
433 3lcm_A SMU.1420, putative oxid 20.2 88 0.003 17.0 2.5 30 7-36 71-100 (196)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.88 E-value=2.5e-22 Score=116.13 Aligned_cols=71 Identities=34% Similarity=0.672 Sum_probs=66.6
Q ss_pred CcccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 1 sl~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++++.||++++++++|||+++++||+++..|+..+.....+++|++|||||+||.++|.|+.+++.++|++
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~ 147 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE 147 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHH
Confidence 36789999999999999999999999999999999888778899999999999999999999999999874
No 2
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=7.6e-18 Score=96.95 Aligned_cols=69 Identities=28% Similarity=0.322 Sum_probs=60.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
+.+.||++++++++|||++++.||+.+..|...+.+.. ..++|++|||||+||.+.+.+..+++..+++
T Consensus 104 l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~ 173 (211)
T 2g3y_A 104 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV 173 (211)
T ss_dssp HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH
Confidence 35678999999999999999999999999998887643 3579999999999998888999988887764
No 3
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.74 E-value=2.4e-17 Score=91.59 Aligned_cols=69 Identities=36% Similarity=0.721 Sum_probs=60.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+......++|+++||||+|+.+.+.++.+++.++++
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 141 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL 141 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHH
Confidence 467899999999999999999999999999999988766789999999999999888899999988875
No 4
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=94.43 Aligned_cols=70 Identities=26% Similarity=0.319 Sum_probs=62.1
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
+++.||++++++++|||++++.||+.+..|+..+..... .++|+++||||+|+.+.+.++.+++.++++.
T Consensus 89 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~ 159 (195)
T 3cbq_A 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 159 (195)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH
Confidence 456789999999999999999999999999999877653 5799999999999998889999999988863
No 5
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=93.32 Aligned_cols=70 Identities=49% Similarity=0.750 Sum_probs=63.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......++|+++||||+|+.+++.++.+++.++++.
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 163 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEH 163 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 3567899999999999999999999999999999887667899999999999998889999999888763
No 6
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.71 E-value=9.2e-17 Score=90.64 Aligned_cols=69 Identities=28% Similarity=0.338 Sum_probs=60.6
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
+++.||++++++++|||++++.||+.+..|...+.+.. ..++|+++||||+|+...+.+..+++..++.
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~ 142 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV 142 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH
Confidence 56789999999999999999999999999998887653 3579999999999998888899888887764
No 7
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.71 E-value=1.5e-16 Score=88.23 Aligned_cols=70 Identities=34% Similarity=0.371 Sum_probs=61.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++++|+.+..|+..+.+... .++|+++||||+|+.+++.+..+++.+++++
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES 140 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH
Confidence 567899999999999999999999999999999876643 5799999999999998899999999988864
No 8
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.71 E-value=8.3e-17 Score=88.23 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=61.5
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
+++.|++++|++++|||++++++|+.+..|+..+..... .++|+++||||+|+.+.+.++.+++.+++++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 138 (169)
T 3q85_A 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 138 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHH
Confidence 466789999999999999999999999999999877654 4899999999999998899999999988764
No 9
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.71 E-value=8.5e-17 Score=92.06 Aligned_cols=69 Identities=20% Similarity=0.416 Sum_probs=61.8
Q ss_pred cccchhhCCCEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCccc------------ccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFEN-VSRWLKDLRDHAGSNIVIMLIGNKSDLKHL------------LNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~------------~~v~~~e~~~~ 68 (72)
+++.|++++|++++|||+++++||+. +..|+..+.... +++|+++||||+|+.++ +.++.+++.++
T Consensus 91 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (214)
T 3q3j_B 91 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI 169 (214)
T ss_dssp TGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH
Confidence 57889999999999999999999999 699999998875 68999999999999763 78999999988
Q ss_pred Hhc
Q 047889 69 SRS 71 (72)
Q Consensus 69 a~~ 71 (72)
+++
T Consensus 170 ~~~ 172 (214)
T 3q3j_B 170 AKQ 172 (214)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 10
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=9.2e-17 Score=90.08 Aligned_cols=70 Identities=33% Similarity=0.615 Sum_probs=63.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......++|+++||||+|+.+++.+..+++..+++.
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 157 (191)
T 3dz8_A 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 157 (191)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 3567899999999999999999999999999999887667899999999999998889999998888763
No 11
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.70 E-value=1.1e-16 Score=88.55 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=57.5
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCC--cccccCCHHHHHHHHh
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA---GSNIVIMLIGNKSDL--KHLLNSMCEEYLIKSR 70 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~vlvgnK~Dl--~~~~~v~~~e~~~~a~ 70 (72)
..||+++|++++|||+++++||+.+..|++.+.... .+++|+++||||+|+ ...+.++.+++.++++
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~ 138 (178)
T 2iwr_A 67 AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA 138 (178)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH
T ss_pred hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH
Confidence 468999999999999999999999999877766543 257999999999999 4567899999988875
No 12
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.70 E-value=1.2e-16 Score=87.36 Aligned_cols=70 Identities=26% Similarity=0.296 Sum_probs=54.6
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
+++.|+++++++++|||++++++|+.+..|+..+.... ..++|+++||||+|+.+.+.+..+++.++++.
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 135 (166)
T 3q72_A 65 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV 135 (166)
T ss_dssp --------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH
T ss_pred hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHH
Confidence 56789999999999999999999999999999887654 36799999999999998899999998888753
No 13
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.70 E-value=1.4e-16 Score=89.32 Aligned_cols=69 Identities=55% Similarity=0.850 Sum_probs=62.8
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+......+.|+++||||+|+.+.+.+..+++.++++
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 154 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR 154 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHH
Confidence 467899999999999999999999999999999988766789999999999998888899999988875
No 14
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=9.1e-17 Score=91.41 Aligned_cols=69 Identities=30% Similarity=0.529 Sum_probs=62.5
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+.......+|+++||||+|+.+.+.+..+++.++++
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 159 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 159 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence 356789999999999999999999999999999988766789999999999998888999999888875
No 15
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.69 E-value=4e-16 Score=88.21 Aligned_cols=70 Identities=37% Similarity=0.614 Sum_probs=63.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+.......+|+++||||+|+.+.+.+..+++.++++.
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA 142 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 5678999999999999999999999999999999887667899999999999998888999998888753
No 16
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.69 E-value=1.7e-16 Score=86.72 Aligned_cols=70 Identities=37% Similarity=0.629 Sum_probs=62.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+.....+.+|+++||||+|+.+++.+..+++.+++++
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 140 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH
Confidence 3567899999999999999999999999999999887667899999999999988888998998888753
No 17
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.69 E-value=3.3e-16 Score=87.58 Aligned_cols=70 Identities=34% Similarity=0.595 Sum_probs=62.9
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......+.|+++||||+|+.+.+.+..+++.+++++
T Consensus 87 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (189)
T 2gf9_A 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADD 156 (189)
T ss_dssp SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999887667899999999999988888988888888753
No 18
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.69 E-value=1.3e-16 Score=88.53 Aligned_cols=70 Identities=27% Similarity=0.402 Sum_probs=62.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++++|+.+..|+..+.... ..++|+++||||+|+.+.+.+..+++.+++++
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~ 152 (183)
T 3kkq_A 82 MREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK 152 (183)
T ss_dssp SHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHH
Confidence 45778999999999999999999999999999986644 36799999999999998899999999988763
No 19
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=89.66 Aligned_cols=68 Identities=28% Similarity=0.356 Sum_probs=60.7
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA---GSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
..|+++++++++|||++++++|+.+..|+..+.... ..++|+++||||+|+.+.+.++.+++.+++++
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 156 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR 156 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH
Confidence 468999999999999999999999999999987763 25799999999999998889999999988763
No 20
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=88.21 Aligned_cols=70 Identities=40% Similarity=0.619 Sum_probs=63.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......+.|+++||||+|+...+.+..+++.++++.
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS 150 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 4567899999999999999999999999999999888767899999999999998889999988888763
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.69 E-value=1.2e-16 Score=87.59 Aligned_cols=70 Identities=36% Similarity=0.650 Sum_probs=61.7
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......++|+++|+||+|+.+++.++.+++.+++++
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES 140 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence 4577899999999999999999999999999998776656799999999999998889999999888764
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.69 E-value=3.2e-16 Score=86.67 Aligned_cols=70 Identities=34% Similarity=0.667 Sum_probs=62.9
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+.....+++|+++|+||+|+.+.+.+..+++.+++++
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 146 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE 146 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH
Confidence 4567899999999999999999999999999999887667899999999999988888999999888753
No 23
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=2.2e-16 Score=88.67 Aligned_cols=70 Identities=34% Similarity=0.679 Sum_probs=63.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......++|+++||||+|+.+++.+..+++.+++++
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~ 157 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES 157 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 4567899999999999999999999999999999887667899999999999988888999999988764
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.69 E-value=3.7e-16 Score=85.48 Aligned_cols=70 Identities=36% Similarity=0.687 Sum_probs=62.8
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+.....+.+|+++||||+|+.+.+.+..+++..++++
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~ 140 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS 140 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHH
Confidence 4567899999999999999999999999999999887667899999999999998888988888888753
No 25
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=86.89 Aligned_cols=68 Identities=25% Similarity=0.372 Sum_probs=58.2
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
.+.|+++++++++|||++++.+|+.+..|+..+.... ..+.|+++||||+|+.+.+.++.+++..+++
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 139 (175)
T 2nzj_A 71 QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV 139 (175)
T ss_dssp HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH
Confidence 4678899999999999999999999999999887653 3579999999999999888899888887765
No 26
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2e-16 Score=90.77 Aligned_cols=70 Identities=53% Similarity=0.866 Sum_probs=60.8
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......++|+++||||+|+.+.+.++.+++.+++++
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 147 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE 147 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence 5678999999999999999999999999999999887667899999999999988888999999888753
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=3.3e-16 Score=86.52 Aligned_cols=69 Identities=36% Similarity=0.623 Sum_probs=60.7
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+......+.|+++|+||+|+.+++.+..+++.++++
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 144 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK 144 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHH
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHH
Confidence 456789999999999999999999999999999988766789999999999999888899888888875
No 28
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.68 E-value=2.4e-16 Score=88.74 Aligned_cols=70 Identities=24% Similarity=0.375 Sum_probs=57.6
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCcc-cccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG---SNIVIMLIGNKSDLKH-LLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~vlvgnK~Dl~~-~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+ .+.++.+++.+++++
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~ 162 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT 162 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH
T ss_pred HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH
Confidence 356789999999999999999999999999999988765 5899999999999988 788999999988764
No 29
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=89.23 Aligned_cols=70 Identities=43% Similarity=0.672 Sum_probs=63.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......++|+++||||+|+..++.++.+++.+++++
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 159 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE 159 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHH
Confidence 4677999999999999999999999999999999877667899999999999988888999998888753
No 30
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.68 E-value=3e-16 Score=87.54 Aligned_cols=69 Identities=19% Similarity=0.436 Sum_probs=60.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCccc------------ccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLKHL------------LNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~------------~~v~~~e~~~~ 68 (72)
+++.|++++|++++|||++++.+|+.+ ..|+..+.... ++.|+++||||+|+.++ +.++.+++.++
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 567899999999999999999999999 78999887765 67999999999999753 67899999888
Q ss_pred Hhc
Q 047889 69 SRS 71 (72)
Q Consensus 69 a~~ 71 (72)
+++
T Consensus 150 ~~~ 152 (184)
T 1m7b_A 150 AKQ 152 (184)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 31
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.68 E-value=3.4e-16 Score=86.19 Aligned_cols=69 Identities=45% Similarity=0.749 Sum_probs=62.4
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
+..|++++|++++|||++++.+|+.+..|+..+......+.|+++||||+|+.+++.+..+++.+++++
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 149 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 467899999999999999999999999999999887767899999999999988888999999888753
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.68 E-value=3.8e-16 Score=87.33 Aligned_cols=70 Identities=24% Similarity=0.542 Sum_probs=62.5
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.||+.+..|+..+.... ..+.|+++||||+|+.+.+.+..+++.+++++
T Consensus 86 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 156 (189)
T 1z06_A 86 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT 156 (189)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred hhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHH
Confidence 45778999999999999999999999999999988765 46799999999999988888999999888763
No 33
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=89.18 Aligned_cols=69 Identities=35% Similarity=0.569 Sum_probs=62.5
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
+..|++++|++++|||++++.+|+.+..|+..+......+.|+++||||+|+.+.+.+..+++.+++++
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 160 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ 160 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence 467899999999999999999999999999999887667899999999999988889999999888764
No 34
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.68 E-value=4.8e-16 Score=87.65 Aligned_cols=70 Identities=33% Similarity=0.585 Sum_probs=62.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......+.|+++||||+|+.+.+.+..+++.+++++
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 142 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence 3567899999999999999999999999999999877667899999999999988888998888888753
No 35
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.67 E-value=2.6e-16 Score=87.43 Aligned_cols=69 Identities=45% Similarity=0.652 Sum_probs=62.1
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
+..|++++|++++|||++++.+|+.+..|+..+......++|+++||||+|+...+.++.+++.+++++
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 144 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE 144 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 467899999999999999999999999999998877667899999999999988888998998888753
No 36
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.67 E-value=5.8e-16 Score=87.47 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=60.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++++|+.+..|+..+..... .++|+++||||+|+..++.+..+++.+++++
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 158 (201)
T 3oes_A 88 LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES 158 (201)
T ss_dssp CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHH
Confidence 567899999999999999999999999999999876543 5799999999999998899999999888763
No 37
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.67 E-value=1.1e-15 Score=84.34 Aligned_cols=68 Identities=37% Similarity=0.646 Sum_probs=61.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|..+..|+..+.... ++.|+++||||+|+.+.+.+..+++..+++
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (181)
T 3tw8_B 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAG 141 (181)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHH
Confidence 46789999999999999999999999999999997765 689999999999999888899888888775
No 38
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.67 E-value=3.8e-16 Score=87.54 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=58.8
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCC--cccccCCHHHHHHHHhc
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDL--KHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl--~~~~~v~~~e~~~~a~~ 71 (72)
|++++|++++|||++++.||+.+..|+..+..... .++|+++||||+|+ ...+.++.+++.+++++
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~ 150 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD 150 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH
Confidence 78999999999999999999999999999987653 57999999999999 45688999999988864
No 39
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=7.2e-16 Score=84.19 Aligned_cols=69 Identities=38% Similarity=0.598 Sum_probs=61.1
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc---ccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL---LNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~---~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+......++|+++||||+|+... +.+..+++.++++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~ 139 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE 139 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHH
Confidence 45678999999999999999999999999999998876678999999999999765 7788888888775
No 40
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.66 E-value=7.5e-16 Score=87.77 Aligned_cols=69 Identities=19% Similarity=0.447 Sum_probs=60.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCcc------------cccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLKH------------LLNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vlvgnK~Dl~~------------~~~v~~~e~~~~ 68 (72)
+++.|+++++++++|||++++.+|+.+ ..|+..+.... ++.|+++||||+|+.+ .+.++.+++.++
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 170 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence 567899999999999999999999999 78999988765 6799999999999975 367888999888
Q ss_pred Hhc
Q 047889 69 SRS 71 (72)
Q Consensus 69 a~~ 71 (72)
+++
T Consensus 171 ~~~ 173 (205)
T 1gwn_A 171 AKQ 173 (205)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 41
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.66 E-value=5.3e-16 Score=84.64 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=61.6
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
+++.|++++|++++|||++++.+|+.+..|+..+.... ..+.|+++||||+|+.+++.++.+++.+++++
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ 137 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH
Confidence 45678999999999999999999999999999887754 36899999999999998888999998888763
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.66 E-value=4.3e-16 Score=85.94 Aligned_cols=69 Identities=33% Similarity=0.567 Sum_probs=59.1
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG---SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+..... ...|+++||||+|+.+.+.++.+++.++++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 143 (178)
T 2hxs_A 72 MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ 143 (178)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH
Confidence 457899999999999999999999999999998876532 334489999999998888899999888875
No 43
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.3e-15 Score=85.35 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=60.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCccc------------ccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKHL------------LNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~~------------~~v~~~e~~~~ 68 (72)
++..|++++|++++|||++++.+|..+. .|+..+.... +++|+++||||+|+.+. +.++.+++.++
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL 160 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH
Confidence 5678999999999999999999999997 8999988765 57999999999999763 57888888888
Q ss_pred Hhc
Q 047889 69 SRS 71 (72)
Q Consensus 69 a~~ 71 (72)
+++
T Consensus 161 ~~~ 163 (194)
T 2atx_A 161 AKE 163 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 44
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.66 E-value=6.1e-16 Score=85.19 Aligned_cols=69 Identities=36% Similarity=0.680 Sum_probs=61.8
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+......++|+++|+||+|+.+++.+..+++..+++
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 147 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHH
Confidence 456789999999999999999999999999999887766789999999999998888899888888765
No 45
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.65 E-value=1e-15 Score=83.68 Aligned_cols=69 Identities=39% Similarity=0.751 Sum_probs=60.6
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......+.|+++||||+|+ ..+.+..+++.+++++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~ 136 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKE 136 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHH
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHH
Confidence 45778999999999999999999999999999998876678999999999999 4577888888887753
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.65 E-value=1e-15 Score=85.84 Aligned_cols=69 Identities=20% Similarity=0.325 Sum_probs=60.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCccc--ccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLKHL--LNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~--~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+ ..|+..+.... +++|+++||||+|+.++ +.+..+++.+++++
T Consensus 87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 158 (194)
T 3reg_A 87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK 158 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH
T ss_pred HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHh
Confidence 567899999999999999999999998 78988887664 67999999999999753 78899999888763
No 47
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=4e-16 Score=87.77 Aligned_cols=70 Identities=30% Similarity=0.362 Sum_probs=62.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++++|+.+..|+..+..... .++|+++||||+|+.+.+.++.+++.+++++
T Consensus 91 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 161 (196)
T 2atv_A 91 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE 161 (196)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred chhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 356789999999999999999999999999999877643 6899999999999998889999999888753
No 48
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.65 E-value=7.4e-16 Score=86.29 Aligned_cols=70 Identities=56% Similarity=0.853 Sum_probs=62.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|..+..|+..+........|+++||||+|+...+.+..+++.++++.
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 159 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN 159 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHH
Confidence 4567899999999999999999999999999999876667899999999999988888898998888753
No 49
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.64 E-value=1.4e-15 Score=86.65 Aligned_cols=70 Identities=30% Similarity=0.524 Sum_probs=59.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|+.+..|+..+......+.|+++||||+|+.+.+.+..+++..+++.
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (218)
T 4djt_A 77 LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG 146 (218)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTT
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 4678899999999999999999999999999999887767799999999999988888998888887753
No 50
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.64 E-value=1.2e-15 Score=84.08 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=60.9
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDH-AGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|..+..|+..+... ...++|+++||||+|+.+.+.+..+++.+++++
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 143 (181)
T 2fn4_A 73 MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS 143 (181)
T ss_dssp CHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 4567899999999999999999999999999888444 346899999999999998888999998888753
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.64 E-value=9.4e-16 Score=83.48 Aligned_cols=69 Identities=26% Similarity=0.437 Sum_probs=61.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++++|+.+..|+..+..... .+.|+++||||+|+.+.+.+..+++.++++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD 137 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH
Confidence 356789999999999999999999999999999887664 579999999999998888899999888875
No 52
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.64 E-value=1.4e-15 Score=82.95 Aligned_cols=68 Identities=34% Similarity=0.462 Sum_probs=61.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++.++++
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAK 137 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHH
Confidence 45788999999999999999999999999999987766 679999999999998888888888888775
No 53
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.64 E-value=1.7e-15 Score=84.23 Aligned_cols=68 Identities=40% Similarity=0.573 Sum_probs=61.0
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
+..|++++|++++|||++++.++..+..|+..+..... ..+|+++|+||+|+.+.+.+..+++.++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 155 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE 155 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence 45789999999999999999999999999999887764 679999999999998888899888888875
No 54
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.63 E-value=2.5e-15 Score=82.88 Aligned_cols=69 Identities=30% Similarity=0.501 Sum_probs=58.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCc-ccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG----SNIVIMLIGNKSDLK-HLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~vlvgnK~Dl~-~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+. ..+.+..+++.++++
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~ 147 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK 147 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH
Confidence 456789999999999999999999999999999877653 678999999999994 456788888888876
No 55
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=84.93 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=61.5
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|..+..|+..+..... .++|+++||||+|+.+.+.+..+++.++++
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (206)
T 2bov_A 78 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE 147 (206)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH
Confidence 346789999999999999999999999999999887653 579999999999999888899999888875
No 56
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=84.50 Aligned_cols=68 Identities=26% Similarity=0.459 Sum_probs=59.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCcc------------cccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKH------------LLNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~------------~~~v~~~e~~~~ 68 (72)
+++.|++++|++++|||++++.+|..+. .|+..+.... +++|+++||||+|+.. .+.+..+++..+
T Consensus 84 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 162 (201)
T 2q3h_A 84 LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLL 162 (201)
T ss_dssp SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHH
Confidence 5678999999999999999999999996 7999988765 5899999999999975 367888888888
Q ss_pred Hh
Q 047889 69 SR 70 (72)
Q Consensus 69 a~ 70 (72)
++
T Consensus 163 ~~ 164 (201)
T 2q3h_A 163 AE 164 (201)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 57
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=89.81 Aligned_cols=69 Identities=39% Similarity=0.617 Sum_probs=53.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+......++|+++||||+|+...+.+..+++.++++
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~ 166 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 166 (199)
T ss_dssp CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHH
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHH
Confidence 467899999999999999999999999999999987766789999999999998877777666666654
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.62 E-value=1.9e-15 Score=83.71 Aligned_cols=70 Identities=26% Similarity=0.435 Sum_probs=61.8
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|..+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++++
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 152 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 152 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH
Confidence 356789999999999999999999999999999877664 5799999999999988888999998888753
No 59
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=86.13 Aligned_cols=68 Identities=32% Similarity=0.483 Sum_probs=57.8
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCc------ccccCCHHHHHHHHh
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK------HLLNSMCEEYLIKSR 70 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~------~~~~v~~~e~~~~a~ 70 (72)
+..|++++|++++|||++++.+|+.+..|+..+......++|+++||||+|+. ..+.+..+++.++++
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~ 167 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM 167 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHH
Confidence 46789999999999999999999999999999987766789999999999996 457788888888775
No 60
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=5.4e-15 Score=83.65 Aligned_cols=68 Identities=41% Similarity=0.762 Sum_probs=59.9
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+........|+++|+||+|+ ..+.+..+++.++++
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~ 152 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAK 152 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHH
Confidence 45778999999999999999999999999999998876668999999999999 557788888887765
No 61
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.61 E-value=6.6e-15 Score=83.26 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=57.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
+++.||+++|++++|||++++++|..+..|+..+.+.. ..++|+++||||+|+.. .++.+++.++++
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~ 152 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFG 152 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhC
Confidence 56789999999999999999999999999998886543 36799999999999975 677888777654
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.61 E-value=2.8e-15 Score=81.52 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=61.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|+++++++++|||++++.+|+.+..|...+..... .+.|+++|+||+|+...+.+..+++.+++++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE 137 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH
Confidence 346789999999999999999999999999988876543 6799999999999988888998888888753
No 63
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.61 E-value=1.1e-15 Score=86.79 Aligned_cols=68 Identities=28% Similarity=0.465 Sum_probs=57.5
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCccccc--------CCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKHLLN--------SMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~--------v~~~e~~~~a~ 70 (72)
+++.|++++|++++|||++++.+|+.+. .|+..+.... +++|+++||||+|+.+.+. ++.+++.++++
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 5678999999999999999999999996 8999998765 5899999999999976654 47888888775
No 64
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.61 E-value=1.5e-15 Score=86.46 Aligned_cols=69 Identities=35% Similarity=0.536 Sum_probs=60.6
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
+..|++++|++++|||++++.+|+.+..|+..+..... ..+|+++|+||+|+.+.+.+..+++.++++.
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 170 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK 170 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 46789999999999999999999999999888765543 6799999999999988888999998888753
No 65
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.61 E-value=7.6e-15 Score=80.84 Aligned_cols=68 Identities=29% Similarity=0.500 Sum_probs=59.9
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG----SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+..... .++|+++||||+|+. .+.+..+++.++++
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~ 143 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCR 143 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHH
Confidence 356889999999999999999999999999999877653 678999999999997 57888899988876
No 66
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.60 E-value=1.9e-15 Score=83.63 Aligned_cols=68 Identities=26% Similarity=0.454 Sum_probs=58.6
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCccccc----------CCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKHLLN----------SMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~----------v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+. .|+..+.... ++.|+++||||+|+.+.+. ++.+++.++++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~ 150 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK 150 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH
Confidence 5678999999999999999999999997 7999888765 5799999999999976554 47888888775
No 67
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=89.70 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=49.3
Q ss_pred CCCEEEEEEECCCh--hhHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 9 GALGALLVYDVTKS--TTFENVSRWLKDLRDH-AGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 9 ~a~~~i~v~d~~~~--~s~~~~~~~~~~~~~~-~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++|++++|||++++ .||+.+..|+..+... ...++|+++||||+|+.+++.+ +++.++++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~ 224 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFAL 224 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHH
Confidence 89999999999999 9999999999998765 3367999999999999876665 56777764
No 68
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.60 E-value=7.9e-15 Score=82.86 Aligned_cols=69 Identities=22% Similarity=0.410 Sum_probs=59.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCccc------------ccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLKHL------------LNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~------------~~v~~~e~~~~ 68 (72)
++..|++++|++++|||++++++|+.+ ..|...+.... ++.|+++||||+|+.+. +.+..+++.++
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (201)
T 2gco_A 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 167 (201)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHH
Confidence 567899999999999999999999999 78988887764 57999999999999765 56888888887
Q ss_pred Hhc
Q 047889 69 SRS 71 (72)
Q Consensus 69 a~~ 71 (72)
+++
T Consensus 168 ~~~ 170 (201)
T 2gco_A 168 ANR 170 (201)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 69
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.60 E-value=9.4e-16 Score=93.41 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=52.5
Q ss_pred ccchhhCCCEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc-------ccCCHHHHHHHHhc
Q 047889 3 TSAYYRGALGALLVYDVTKS--TTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL-------LNSMCEEYLIKSRS 71 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~-------~~v~~~e~~~~a~~ 71 (72)
++.||++++|+|+|||++++ +++..+..|+..+... .+++|++++|||+||..+ |.|..++++++|++
T Consensus 66 ~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 66 SERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp HHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 57899999999999999998 3333333445555444 368999999999999764 67888899998874
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.59 E-value=3.9e-15 Score=84.99 Aligned_cols=69 Identities=26% Similarity=0.474 Sum_probs=53.9
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCccc------------ccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKHL------------LNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~~------------~~v~~~e~~~~ 68 (72)
+++.|++++|++++|||++++.+|+.+. .|+..+.... +++|+++||||+|+... +.++.+++.++
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 176 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM 176 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence 4577899999999999999999999996 7999887765 67999999999999765 36888888888
Q ss_pred Hhc
Q 047889 69 SRS 71 (72)
Q Consensus 69 a~~ 71 (72)
+++
T Consensus 177 ~~~ 179 (214)
T 2j1l_A 177 ARS 179 (214)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 71
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=8.8e-15 Score=81.63 Aligned_cols=69 Identities=42% Similarity=0.656 Sum_probs=59.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|..+..|+..+..... ..+|+++|+||+|+. .+.+..+++.+++++
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~ 149 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARK 149 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHH
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHH
Confidence 457789999999999999999999999999999876543 579999999999994 467888888888753
No 72
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.59 E-value=1.5e-14 Score=81.27 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=56.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
+++.|++++|++++|||+++++||+.+..|+..+.+.. ..+.|+++||||+|+.+ .++.+++.+..+
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~ 150 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALG 150 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTT
T ss_pred HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhC
Confidence 46789999999999999999999999999998886543 26799999999999976 677777776543
No 73
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.58 E-value=6.1e-15 Score=81.67 Aligned_cols=69 Identities=25% Similarity=0.466 Sum_probs=59.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCccc------------ccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKHL------------LNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~~------------~~v~~~e~~~~ 68 (72)
++..|++++|++++|||++++.+|..+. .|+..+.... ++.|+++||||+|+.+. +.++.+++.++
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHH
Confidence 4678999999999999999999999997 7998888765 48999999999999653 57888888888
Q ss_pred Hhc
Q 047889 69 SRS 71 (72)
Q Consensus 69 a~~ 71 (72)
+++
T Consensus 148 ~~~ 150 (186)
T 1mh1_A 148 AKE 150 (186)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.58 E-value=4.3e-15 Score=82.85 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=56.0
Q ss_pred cccchhhCCCEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVT------KSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
+++.|++++|++++|||++ ++++|+.+..|+..++. ...++|+++||||+|+.+ .++.+++.+++++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~ 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDP 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCT
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHh
Confidence 4567999999999999999 67888888889888743 237899999999999976 4888898888764
No 75
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.58 E-value=1.8e-14 Score=81.13 Aligned_cols=68 Identities=29% Similarity=0.468 Sum_probs=58.8
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG----SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|..+..|+..+..... .+.|+++||||+|+. .+.+..+++.++++
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~ 144 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCY 144 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHH
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHH
Confidence 467899999999999999999999999999998876543 478999999999998 56788888888775
No 76
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.57 E-value=5.5e-15 Score=83.85 Aligned_cols=69 Identities=25% Similarity=0.446 Sum_probs=59.1
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCcccc------------cCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKHLL------------NSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~------------~v~~~e~~~~ 68 (72)
++..|++++|++++|||++++.+|+.+. .|+..+.... ++.|+++||||+|+...+ .++.+++..+
T Consensus 94 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 4gzl_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHH
Confidence 5678999999999999999999999996 8998888775 789999999999997654 3778888877
Q ss_pred Hhc
Q 047889 69 SRS 71 (72)
Q Consensus 69 a~~ 71 (72)
+++
T Consensus 173 ~~~ 175 (204)
T 4gzl_A 173 AKE 175 (204)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1.8e-14 Score=81.72 Aligned_cols=69 Identities=19% Similarity=0.382 Sum_probs=59.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCccc------------ccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLKHL------------LNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~------------~~v~~~e~~~~ 68 (72)
++..|++++|++++|||++++.+|..+ ..|+..+.... ++.|+++||||+|+... +.+..+++.++
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM 167 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence 467899999999999999999999999 78988887754 67999999999999765 56788888887
Q ss_pred Hhc
Q 047889 69 SRS 71 (72)
Q Consensus 69 a~~ 71 (72)
+++
T Consensus 168 ~~~ 170 (207)
T 2fv8_A 168 AVR 170 (207)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 78
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.57 E-value=2.3e-14 Score=79.52 Aligned_cols=68 Identities=21% Similarity=0.425 Sum_probs=59.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
+++.|++++|++++|||++++.+|+.+..|+..+..... .+.|+++||||+|+.+ +.+..+++.++++
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~ 136 (189)
T 4dsu_A 68 MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLAR 136 (189)
T ss_dssp THHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHH
Confidence 467889999999999999999999999999999877543 6799999999999974 6778888887765
No 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=5.8e-15 Score=80.68 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=58.7
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG--SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
+..|++++|++++|||++++.+|+.+..|+..+.+... ++.|+++||||+|+...+.+..+++..+++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~ 137 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR 137 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH
Confidence 46788999999999999999999999999888877543 579999999999998888888888887765
No 80
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.56 E-value=3.6e-14 Score=79.17 Aligned_cols=67 Identities=31% Similarity=0.566 Sum_probs=58.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|++++|++++|||++++.+|..+..|+..+.... ..|+++|+||+| ..++.+..+++.+++++
T Consensus 109 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~~~~~~~~~~~~~~~ 175 (208)
T 3clv_A 109 IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILEVQKYAQD 175 (208)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-CCSCHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cccccCCHHHHHHHHHH
Confidence 45678999999999999999999999999999988765 399999999999 55678899999888764
No 81
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.56 E-value=3.9e-14 Score=78.99 Aligned_cols=69 Identities=20% Similarity=0.403 Sum_probs=56.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|+++++++++|||++++.+|+.+..|+..+..... .++|+++||||+|+.. +.+..+++.+++++
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~ 154 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKS 154 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHH
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHH
Confidence 457889999999999999999999999999999877653 5799999999999976 67888888888753
No 82
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.56 E-value=3.7e-15 Score=89.45 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=52.6
Q ss_pred CcccchhhCCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 1 AITSAYYRGALGALLVYDVTKST-TFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 1 sl~~~y~~~a~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
++++.||+++|++++|||++++. +|+.+..|+..+.. .++|++|||||+||.+++.+ +++.+++
T Consensus 76 ~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~ 140 (301)
T 1u0l_A 76 LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELE 140 (301)
T ss_dssp EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHH
T ss_pred eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHH
Confidence 36789999999999999999997 79999999987765 46999999999999765544 4455544
No 83
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.55 E-value=1.4e-14 Score=81.54 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=54.3
Q ss_pred cchhhCCCEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc-------cccCCHHHHHHHHh
Q 047889 4 SAYYRGALGALLVYDVTKS--TTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH-------LLNSMCEEYLIKSR 70 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~-------~~~v~~~e~~~~a~ 70 (72)
+.||+++|++++|||++++ +++..+..|+..+.... +++|+++||||+|+.. .+.+..+++.++++
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~ 164 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD 164 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence 6899999999999999998 77777778877775443 6899999999999754 46677777777776
No 84
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.54 E-value=1.3e-14 Score=87.17 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=57.0
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCcc--ccc----CCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA--GSNIVIMLIGNKSDLKH--LLN----SMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~vlvgnK~Dl~~--~~~----v~~~e~~~~a~~ 71 (72)
+++.||+++|++++|||++++++|+.+..|...+.... .+++|+++||||+|+.+ .+. +..+++.+++++
T Consensus 73 ~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~ 150 (307)
T 3r7w_A 73 QKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE 150 (307)
T ss_dssp THHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999988766554432 36799999999999977 565 777888888764
No 85
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.54 E-value=5.2e-14 Score=76.26 Aligned_cols=67 Identities=22% Similarity=0.437 Sum_probs=58.2
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
+..|++++|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.. +.+..+++.++++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~ 135 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLAR 135 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHH
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHH
Confidence 45689999999999999999999999999999877653 4799999999999976 6777888888765
No 86
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=4.3e-15 Score=83.00 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=54.8
Q ss_pred cccchhhCCCEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCC---HHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKS-TTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSM---CEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~---~~e~~~~a~ 70 (72)
+++.|+++++++++|||++++ .+|+.+..|+..+.... +++|+++||||+|+.+.+.+. .+++.++++
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 143 (184)
T 2zej_A 72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLN 143 (184)
T ss_dssp TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTT
T ss_pred hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHH
Confidence 567899999999999999997 58999999999987654 579999999999998765543 344555553
No 87
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.53 E-value=6.9e-15 Score=91.53 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=51.6
Q ss_pred CcccchhhCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCccccc
Q 047889 1 AITSAYYRGALGALLVYDVTK----------STTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLN 59 (72)
Q Consensus 1 sl~~~y~~~a~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~ 59 (72)
++++.||++++++|+|||+++ ..+|+.+..|++.+.+.. ..++|++|+|||+||.+++.
T Consensus 232 ~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki 301 (402)
T 1azs_C 232 RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKV 301 (402)
T ss_dssp GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHH
T ss_pred hhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhh
Confidence 368999999999999999999 899999999999987653 36799999999999966543
No 88
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.52 E-value=8.1e-15 Score=89.89 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=58.8
Q ss_pred CcccchhhCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccc-----------
Q 047889 1 AITSAYYRGALGALLVYDVTK----------STTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLL----------- 58 (72)
Q Consensus 1 sl~~~y~~~a~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~----------- 58 (72)
++|..||++++++|+|||+++ ..+|.....|++.+.+.. ..++|++|+|||+||.+++
T Consensus 208 ~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp 287 (353)
T 1cip_A 208 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYP 287 (353)
T ss_dssp GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCT
T ss_pred HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhccc
Confidence 368899999999999999999 578999999998887643 2679999999999996544
Q ss_pred ----cCCHHHHHHHHh
Q 047889 59 ----NSMCEEYLIKSR 70 (72)
Q Consensus 59 ----~v~~~e~~~~a~ 70 (72)
.++.+++.++++
T Consensus 288 ~~~g~~~~~e~~~~~~ 303 (353)
T 1cip_A 288 EYAGSNTYEEAAAYIQ 303 (353)
T ss_dssp TCCSCSCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHH
Confidence 478889988875
No 89
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.52 E-value=6.6e-15 Score=90.32 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=50.3
Q ss_pred CcccchhhCCCEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccc
Q 047889 1 AITSAYYRGALGALLVYDVT----------KSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLL 58 (72)
Q Consensus 1 sl~~~y~~~a~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~ 58 (72)
++++.||++++++|+|||++ +..+|+.+..|++.+.+.. ..++|++|+|||+||.+++
T Consensus 198 ~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k 266 (354)
T 2xtz_A 198 RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKK 266 (354)
T ss_dssp GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhh
Confidence 36899999999999999998 8899999999998887653 2679999999999996544
No 90
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.51 E-value=3.8e-14 Score=80.94 Aligned_cols=56 Identities=39% Similarity=0.658 Sum_probs=50.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLL 58 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~ 58 (72)
++..|++++|++++|||++++.+|..+..|+..+.... .++|+++||||+|+.+.+
T Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 80 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc
Confidence 56789999999999999999999999999999998775 689999999999997643
No 91
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.51 E-value=5.7e-14 Score=83.87 Aligned_cols=69 Identities=22% Similarity=0.422 Sum_probs=59.6
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCccc------------ccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKHL------------LNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~~------------~~v~~~e~~~~ 68 (72)
++..|++++|++++|||++++.+|..+. .|+..+.... +++|+++||||+|+... +.++.+++.++
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 297 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 297 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHH
Confidence 5678999999999999999999999996 7988887765 48999999999999653 67888888888
Q ss_pred Hhc
Q 047889 69 SRS 71 (72)
Q Consensus 69 a~~ 71 (72)
+++
T Consensus 298 ~~~ 300 (332)
T 2wkq_A 298 AKE 300 (332)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 92
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=6.1e-14 Score=78.50 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=57.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG--SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++..|++++|++++|||++++.+|+.+..|+..+..... .++|+++||||+|+.. +.+..+++..+++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~ 141 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQ 141 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHH
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHH
Confidence 356789999999999999999999999999888876543 4789999999999975 6778888877765
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.50 E-value=3.1e-13 Score=75.50 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=54.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG---SNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
++..|++++|++++|||++++.+|+.+..|+..+..... .+.|+++||||+|+.. .+..++..++.
T Consensus 83 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~ 151 (190)
T 2h57_A 83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLL 151 (190)
T ss_dssp GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHh
Confidence 457899999999999999999999999999888876533 5799999999999975 44556655544
No 94
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.49 E-value=3.5e-13 Score=75.96 Aligned_cols=70 Identities=66% Similarity=0.993 Sum_probs=61.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
++..|+++++++++|||++++.+|+.+..|+..+........|++++|||+|+.+.+.+..+++.+++++
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~ 139 (199)
T 2f9l_A 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 139 (199)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred hhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHH
Confidence 4567889999999999999999999999999888766556789999999999998888998999888763
No 95
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=3.1e-13 Score=75.34 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=52.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYLI 67 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~~ 67 (72)
++..|++++|++++|||+++++||+.+..|+..+.... ..+.|+++||||+|+.+ ....++..+
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~ 140 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQ 140 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHH
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHH
Confidence 45678999999999999999999999999998887653 26799999999999975 344444443
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.47 E-value=5.5e-13 Score=74.07 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=51.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYL 66 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~ 66 (72)
++..|++++|++++|||++++++|+.+..|+..+.... ..+.|+++||||+|+.. ....++..
T Consensus 81 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~ 144 (181)
T 2h17_A 81 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEIS 144 (181)
T ss_dssp GGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHH
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHH
Confidence 46789999999999999999999999999988876542 36799999999999975 33344443
No 97
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.47 E-value=5.6e-14 Score=85.54 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=57.4
Q ss_pred CcccchhhCCCEEEEEEECC----------ChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccc-----------
Q 047889 1 AITSAYYRGALGALLVYDVT----------KSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLL----------- 58 (72)
Q Consensus 1 sl~~~y~~~a~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~----------- 58 (72)
++|.+||++++|+|+|||++ +.++|.....|++.+.+... .++|++|+|||+||.+++
T Consensus 182 ~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp 261 (327)
T 3ohm_A 182 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFP 261 (327)
T ss_dssp TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCT
T ss_pred HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhch
Confidence 47899999999999999665 77888888888888765432 679999999999997766
Q ss_pred -----cCCHHHHHHHH
Q 047889 59 -----NSMCEEYLIKS 69 (72)
Q Consensus 59 -----~v~~~e~~~~a 69 (72)
.++.++|.++.
T Consensus 262 ~y~g~~~~~e~a~~fi 277 (327)
T 3ohm_A 262 EYDGPQRDAQAAREFI 277 (327)
T ss_dssp TCCSCSSCHHHHHHHH
T ss_pred hccCCCCCHHHHHHHH
Confidence 57888998874
No 98
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.47 E-value=3.6e-13 Score=73.30 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=47.4
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCccc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~ 57 (72)
++.|++++|++++|||++++++|..+..|+..+.... ..+.|+++||||+|+.+.
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 4678999999999999999999999999988876532 367999999999999763
No 99
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.46 E-value=5.6e-14 Score=86.42 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=57.4
Q ss_pred cccchhhCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccc------------
Q 047889 2 ITSAYYRGALGALLVYDVTK----------STTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLL------------ 58 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~------------ 58 (72)
++..||++++++|+|||+++ +.+|..+..|+..+.+.. ..++|++|+|||+||.+++
T Consensus 217 ~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~ 296 (362)
T 1zcb_A 217 RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLE 296 (362)
T ss_dssp -CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTT
T ss_pred hHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCcc
Confidence 67899999999999999999 789999999998887643 3679999999999997544
Q ss_pred ----cCCHHHHHHHH
Q 047889 59 ----NSMCEEYLIKS 69 (72)
Q Consensus 59 ----~v~~~e~~~~a 69 (72)
.++.+++.+++
T Consensus 297 y~g~~~~~~e~~~~~ 311 (362)
T 1zcb_A 297 FEGDPHCLRDVQKFL 311 (362)
T ss_dssp CCSCTTCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH
Confidence 37788888876
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.46 E-value=4.6e-13 Score=75.27 Aligned_cols=70 Identities=66% Similarity=0.993 Sum_probs=61.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHhc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSRS 71 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~~ 71 (72)
+.+.|+++++++++|||+++..+|+.+..|+..+........|+++++||+|+.+.+.+..+++.+++++
T Consensus 94 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~ 163 (191)
T 1oix_A 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 163 (191)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 4577889999999999999999999999999888765556789999999999998888888999888764
No 101
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.46 E-value=7.8e-13 Score=73.46 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=48.6
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCccc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~ 57 (72)
++..|++++|++++|||++++.+|+.+..|+..+.... ..+.|+++||||+|+.+.
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 46789999999999999999999999999988876542 267999999999999764
No 102
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.45 E-value=4.4e-13 Score=74.69 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=47.7
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLL 58 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~ 58 (72)
+..|++++|++++|||++++++|+.+..|+..+.... ..+.|+++||||+|+.+.+
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 4678999999999999999999999999988775432 3679999999999997643
No 103
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.45 E-value=5.4e-13 Score=74.62 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=48.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--------CCCeEEEEeeCCCCccc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG--------SNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~vlvgnK~Dl~~~ 57 (72)
++..|++++|++++|||++++++|..+..|+..+..... .++|+++||||+|+...
T Consensus 79 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 79 LWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 567899999999999999999999999999888765421 37999999999999764
No 104
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.45 E-value=6.9e-13 Score=74.54 Aligned_cols=56 Identities=16% Similarity=0.345 Sum_probs=48.1
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCccc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~ 57 (72)
+++.|++++|++++|||++++++|+.+..|+..+.... ..+.|+++||||+|+.+.
T Consensus 89 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 89 LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp THHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 45678999999999999999999999999988876532 257999999999999763
No 105
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.16 E-value=8.4e-15 Score=82.75 Aligned_cols=68 Identities=25% Similarity=0.451 Sum_probs=55.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCcccc------------cCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKHLL------------NSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~------------~v~~~e~~~~ 68 (72)
++..|++++|++++|||++++.+|+.+. .|+..+.... +++|+++||||+|+.+.+ .+..+++.++
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 4567899999999999999999999996 8988887654 479999999999997643 5566666666
Q ss_pred Hh
Q 047889 69 SR 70 (72)
Q Consensus 69 a~ 70 (72)
++
T Consensus 173 ~~ 174 (204)
T 3th5_A 173 AK 174 (204)
Confidence 54
No 106
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.44 E-value=5.1e-14 Score=86.08 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=48.8
Q ss_pred cccchhhCCCEEEEEEECC----------ChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCccc
Q 047889 2 ITSAYYRGALGALLVYDVT----------KSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~ 57 (72)
+|..||++++|+|+|||++ +..+|.....|+..+.+... .++|++|+|||+||.++
T Consensus 177 ~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 177 XWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp HHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHH
T ss_pred cHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhh
Confidence 5789999999999999999 78999999999888866543 68999999999999654
No 107
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.44 E-value=2e-13 Score=74.63 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=48.1
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCccc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~ 57 (72)
++..|++++|++++|||++++.+|..+..|+..+.... ..+.|+++||||+|+.+.
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 46789999999999999999999999998888775543 267999999999999764
No 108
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.43 E-value=1.7e-13 Score=76.42 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=48.1
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCccc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~ 57 (72)
+++.|++++|++++|||++++++|..+..|+..+.... ..+.|+++||||+|+.+.
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 45779999999999999999999999998888776543 257999999999999764
No 109
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.43 E-value=1.1e-12 Score=72.50 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=51.6
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcccccCCHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHLLNSMCEEYL 66 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~~~v~~~e~~ 66 (72)
++..|++++|++++|||.+++.+|+.+..|+..+.... ..+.|+++|+||+|+.+. ...++..
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~ 141 (183)
T 1moz_A 78 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVS 141 (183)
T ss_dssp TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHH
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHH
Confidence 46789999999999999999999999999988886653 367999999999999753 3444443
No 110
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.42 E-value=1.3e-12 Score=72.98 Aligned_cols=55 Identities=25% Similarity=0.401 Sum_probs=47.7
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCcc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~ 56 (72)
++..|++++|++++|||++++++|..+..|+..+.... ..++|+++||||+|+..
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 45678999999999999999999999999988876542 26799999999999975
No 111
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.35 E-value=1.5e-12 Score=74.01 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=48.6
Q ss_pred ccchhhC----CCEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCcccccCC
Q 047889 3 TSAYYRG----ALGALLVYDVT-KSTTFENVSRWLKDLRDH----AGSNIVIMLIGNKSDLKHLLNSM 61 (72)
Q Consensus 3 ~~~y~~~----a~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~vlvgnK~Dl~~~~~v~ 61 (72)
+..|+++ ++++++|||.+ ++.+|..+..|+..+... ...++|+++|+||+|+...+.+.
T Consensus 72 ~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 72 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred HHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 3467776 89999999999 899999999998887654 33689999999999998766544
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.33 E-value=1.1e-11 Score=78.10 Aligned_cols=55 Identities=22% Similarity=0.461 Sum_probs=48.3
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKH 56 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~ 56 (72)
++..||+++|++|+|||++++.+|..+..|+..+.+... .++|+++||||+|+.+
T Consensus 382 ~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 382 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp GGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred HHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 467899999999999999999999999999888765432 6799999999999975
No 113
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.31 E-value=2e-12 Score=77.71 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=51.2
Q ss_pred cccchhhCCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCC-HHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKST-TFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSM-CEEYLIKS 69 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~-~~e~~~~a 69 (72)
+.+.|++++|++++|||++++. +++.+..|+..+.. .++|+++|+||+||.+++.+. .++..+++
T Consensus 72 l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~ 138 (302)
T 2yv5_A 72 LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIY 138 (302)
T ss_dssp EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHH
Confidence 5678999999999999999996 99999999887754 569999999999997644333 34444443
No 114
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.31 E-value=7.7e-12 Score=75.81 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=47.4
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCccc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl~~~ 57 (72)
++..|++++|++|+|||++++.+|..+..|+..+.... ..++|+++||||+|+.+.
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 46779999999999999999999999988777764433 368999999999999764
No 115
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.25 E-value=2.6e-11 Score=67.60 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=46.7
Q ss_pred ccchhhC----CCEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCcccccC
Q 047889 3 TSAYYRG----ALGALLVYDVT-KSTTFENVSRWLKDLRDH----AGSNIVIMLIGNKSDLKHLLNS 60 (72)
Q Consensus 3 ~~~y~~~----a~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~vlvgnK~Dl~~~~~v 60 (72)
+..|+++ +|++++|||.+ ++.+|..+..|+..+... ...++|+++||||+|+...+.+
T Consensus 108 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 108 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred HHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 3456665 89999999999 999999998888777554 2357999999999999875543
No 116
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.19 E-value=8.1e-11 Score=66.63 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=42.7
Q ss_pred cccchhhCCCEEEEEEECCChh-hHHHHHH-HHHHHHHh--cCCCCeEEEEeeCCCCcccc
Q 047889 2 ITSAYYRGALGALLVYDVTKST-TFENVSR-WLKDLRDH--AGSNIVIMLIGNKSDLKHLL 58 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~~~vlvgnK~Dl~~~~ 58 (72)
+++.|+++++++++|||+++.. ++..+.. |...+... ...++|+++||||+|+...+
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 4567899999999999999964 5766655 44444432 23579999999999997654
No 117
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.18 E-value=6.9e-11 Score=67.84 Aligned_cols=58 Identities=16% Similarity=0.049 Sum_probs=42.9
Q ss_pred chhhCCCEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHH
Q 047889 5 AYYRGALGALLVYDVTKSTTFEN--VSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCE 63 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~ 63 (72)
.+++.+|++++|||++++.+|.. ...|+..+.... ++.|+++||||+|+.+.+.+..+
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~ 163 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSID 163 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHH
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHH
Confidence 35788999999999999988752 245665555432 47999999999999887777765
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.14 E-value=1.6e-11 Score=67.95 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=43.1
Q ss_pred chhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
.+++++|++++|||.+++.+++ ...|++.+.+....++|+++||||+|+.+
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 4789999999999999999887 45788877766556799999999999854
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.13 E-value=1.1e-10 Score=74.47 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=54.2
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
+...|+++++++++|||.++. +.+..|...+.... ++.|+++||||+|+...+.+..+++.+++.
T Consensus 114 ~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~ 178 (535)
T 3dpu_A 114 SHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFP 178 (535)
T ss_dssp TCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCG
T ss_pred HHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHH
Confidence 456789999999999998765 55677999988775 579999999999998888888888877654
No 120
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.11 E-value=2.9e-11 Score=67.02 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=48.2
Q ss_pred ccchhhC-CCEEEEEEECCChhhHHHH-HHHHHH--------H-HHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 3 TSAYYRG-ALGALLVYDVTKSTTFENV-SRWLKD--------L-RDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 3 ~~~y~~~-a~~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
...|+++ +++++++|++.+..+|..+ ..|... + ......++|+++||||+|+...+ .+++.++++
T Consensus 72 ~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~ 147 (190)
T 2cxx_A 72 IVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAE 147 (190)
T ss_dssp HHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHH
T ss_pred HHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHH
Confidence 3567887 9999999999999999988 677653 2 22223579999999999997654 445555554
No 121
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.06 E-value=1.3e-10 Score=63.76 Aligned_cols=61 Identities=16% Similarity=0.031 Sum_probs=44.3
Q ss_pred ccchhh--CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 3 TSAYYR--GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 3 ~~~y~~--~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
.+.|++ +++++++|+|.++.++ ...|+.++.+ .+.|+++||||+|+...+.+.. ++.++++
T Consensus 73 ~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~ 135 (165)
T 2wji_A 73 ARDYIINEKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEK 135 (165)
T ss_dssp HHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHH
Confidence 356776 8999999999998654 4457777654 3689999999999976655543 3444443
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.96 E-value=1e-09 Score=65.94 Aligned_cols=63 Identities=13% Similarity=-0.020 Sum_probs=50.3
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
..+++++|++++|+|.++..++.....|++.+.. .+.|+++|+||+|+...+....+....++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~ 149 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIH 149 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHH
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999998888887765 35899999999999744455555555544
No 123
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.91 E-value=4.6e-09 Score=57.50 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=36.0
Q ss_pred cccchhhCCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 2 ITSAYYRGALGALLVYDVTK---STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
++..+++++|++++|||.++ +.+++.+ ......++|+++||||+|+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l-------~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 71 MRARGAQVTDIVILVVAADDGVMPQTVEAI-------NHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp SCCSSCCCCCEEEEEEETTCCCCHHHHHHH-------HHHGGGSCCEEEEEETTTSSC
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHHHHHH-------HHHHhCCCCEEEEEECccCCc
Confidence 45678899999999999998 4444433 222235689999999999975
No 124
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.91 E-value=2.1e-09 Score=65.72 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=46.0
Q ss_pred ccchhhC---CCEEEEEEECCC---hhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCccc
Q 047889 3 TSAYYRG---ALGALLVYDVTK---STTFENVSRWLKDLRDHAG--SNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 3 ~~~y~~~---a~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~~~vlvgnK~Dl~~~ 57 (72)
...|++. ++++++|+|+++ +.+++.+..|..++..... ...|+++|+||+|+...
T Consensus 227 ~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 227 GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred HHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 3456554 999999999999 8899999999999987653 47999999999999753
No 125
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.86 E-value=7.5e-10 Score=61.32 Aligned_cols=60 Identities=18% Similarity=0.054 Sum_probs=43.4
Q ss_pred ccchhh--CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 3 TSAYYR--GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 3 ~~~y~~--~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
+..|++ .++++++|+|.++ ++....|+..+.. .+.|+++||||+|+...+.+. +++.+++
T Consensus 77 ~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~ 138 (188)
T 2wjg_A 77 ARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLE 138 (188)
T ss_dssp HHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHH
T ss_pred HHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHH
Confidence 455665 4999999999765 5666778777754 468999999999997665554 3444444
No 126
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.83 E-value=4.2e-09 Score=61.21 Aligned_cols=63 Identities=10% Similarity=-0.005 Sum_probs=44.3
Q ss_pred CcccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHH----hc-CCCCeEEEEeeCC-CCcccccCCHHHHH
Q 047889 1 AITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRD----HA-GSNIVIMLIGNKS-DLKHLLNSMCEEYL 66 (72)
Q Consensus 1 sl~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~----~~-~~~~~~vlvgnK~-Dl~~~~~v~~~e~~ 66 (72)
++|+.||.++||+|+|.|.+|++.++ .+.-+.++.. .. ..++|++|.+||. |++. .++..|..
T Consensus 117 plWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 117 PQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred HHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 47899999999999999999987655 3333322222 11 1578999999995 7754 56666544
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.83 E-value=8.1e-09 Score=64.51 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=46.0
Q ss_pred chhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 047889 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEY 65 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~ 65 (72)
.+++++|++++|+|.++..+++.. .|...+.. .+.|+++|+||+|+.+++.++.++.
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~ 309 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEF 309 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHH
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHH
Confidence 478899999999999999888875 47666654 4689999999999987666655544
No 128
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.82 E-value=4.9e-09 Score=58.27 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=40.3
Q ss_pred ccchhhCC---CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCC
Q 047889 3 TSAYYRGA---LGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSM 61 (72)
Q Consensus 3 ~~~y~~~a---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~ 61 (72)
...|++++ +++++|+|.+++.++.... +...+.. .+.|+++|+||+|+...+.+.
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~ 153 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWD 153 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHH
Confidence 45677777 9999999999988877643 1222222 568999999999997765543
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.79 E-value=1.6e-08 Score=63.50 Aligned_cols=62 Identities=16% Similarity=0.077 Sum_probs=47.3
Q ss_pred chhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
.|++.+|++++|+|.++..+ +....|...+.+ .+.|+++|+||+|+.+++.+..+++.+.++
T Consensus 273 ~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~ 334 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIR 334 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHH
Confidence 37889999999999987543 233456555554 458999999999998878888787776654
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.78 E-value=2.7e-08 Score=60.74 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=44.1
Q ss_pred hhhCCCEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccccc
Q 047889 6 YYRGALGALLVYDVTKST--TFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLN 59 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~ 59 (72)
+...+|++++|+|.+++. +++....|+..+..... +.|+++|+||+|+.....
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~ 297 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN 297 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH
Confidence 455799999999999987 78888899988877653 799999999999976443
No 131
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.78 E-value=1.4e-08 Score=54.62 Aligned_cols=50 Identities=14% Similarity=0.061 Sum_probs=35.5
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
..+++++|++++|||.+++.+... .|+..+... .+.|+++||||+|+.+.
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 74 DRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH 123 (161)
T ss_dssp HHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG
T ss_pred HHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc
Confidence 457899999999999998644332 222222222 46899999999999764
No 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.77 E-value=1.1e-08 Score=64.91 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=41.4
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccC
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v 60 (72)
..|++++|++++|+|.+++.++..+..+...+... .+.|+++|+||+|+...+.+
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA 361 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch
Confidence 45889999999999999998886544444333333 26999999999999765544
No 133
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.77 E-value=7.9e-09 Score=57.20 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=41.2
Q ss_pred ccchhhCC---CEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc--ccCCHHHHHHHHh
Q 047889 3 TSAYYRGA---LGALLVYDVTKSTTF--ENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL--LNSMCEEYLIKSR 70 (72)
Q Consensus 3 ~~~y~~~a---~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~--~~v~~~e~~~~a~ 70 (72)
.+.|++++ +++++|+|.++..+. ..+..|+.. .+.|+++||||+|+.+. +.+..+++.++++
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 163 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS 163 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHh
Confidence 34677776 999999998876443 333444332 25899999999999643 3444556665554
No 134
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.66 E-value=1.1e-08 Score=60.77 Aligned_cols=60 Identities=18% Similarity=0.013 Sum_probs=43.0
Q ss_pred ccchhh--CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 3 TSAYYR--GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 3 ~~~y~~--~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
.+.|++ ++|++++|+|.++.+++ ..|..++.+ .++|+++++||+|+...+.+. .++.+++
T Consensus 72 ~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~ 133 (272)
T 3b1v_A 72 ARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLS 133 (272)
T ss_dssp HHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHH
T ss_pred HHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHH
Confidence 456776 59999999999887654 456666654 468999999999997655554 2344443
No 135
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.65 E-value=4.6e-08 Score=58.76 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=38.4
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWL-KDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
..|++++|++++|+|.+++.+.. ..|+ +.+.... ++.|+++|+||+|+...
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKY 132 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSS
T ss_pred HHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCc
Confidence 46889999999999999875544 3443 4555442 47999999999999753
No 136
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.62 E-value=1.7e-08 Score=59.40 Aligned_cols=52 Identities=15% Similarity=0.058 Sum_probs=39.5
Q ss_pred cchh--hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCC
Q 047889 4 SAYY--RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSM 61 (72)
Q Consensus 4 ~~y~--~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~ 61 (72)
+.|+ .++|++++|+|.++.++.. .|..++.+ .++|+++|+||+|+...+.+.
T Consensus 76 ~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~ 129 (258)
T 3a1s_A 76 RDYLLKGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK 129 (258)
T ss_dssp HHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC
T ss_pred HHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH
Confidence 4566 4899999999999876543 46666654 368999999999997665554
No 137
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.62 E-value=3.2e-08 Score=60.94 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=43.8
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIK 68 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~ 68 (72)
+.+.++++++++++|+|++++. ..|.+.+.+.. .+.|+++|+||+||... .+..++..++
T Consensus 62 ~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~-~~~~~~~~~~ 121 (368)
T 3h2y_A 62 ILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK-SVKHDKVKHW 121 (368)
T ss_dssp HHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT-TSCHHHHHHH
T ss_pred HHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc-ccCHHHHHHH
Confidence 3467889999999999999864 45766676654 47899999999999653 3344444333
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.60 E-value=5.2e-08 Score=61.08 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=41.9
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
..+++++|++++|+|.+..+ ....|+..+.+. +.|+++|+||+|+...+.. +.+.+++
T Consensus 108 ~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~ 165 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYE 165 (423)
T ss_dssp HHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSS
T ss_pred HHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHH
Confidence 34889999999999984333 335677666654 6899999999999876554 4444443
No 139
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.56 E-value=1.7e-07 Score=54.98 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=41.1
Q ss_pred CCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCC--CeEEEEeeCCCCcccccCCHHH
Q 047889 9 GALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSN--IVIMLIGNKSDLKHLLNSMCEE 64 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~~~vlvgnK~Dl~~~~~v~~~e 64 (72)
++|++++|++++... +... ..|++.+.+..+.+ .|+++|+||+|+...+....++
T Consensus 116 ~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~ 173 (262)
T 3def_A 116 TIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYET 173 (262)
T ss_dssp EECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHH
T ss_pred CCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHH
Confidence 789999999998765 5444 57888887765433 4899999999997655555554
No 140
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.55 E-value=1.7e-07 Score=55.09 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=41.3
Q ss_pred hhCCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCC--CeEEEEeeCCCCcccccCCHHH
Q 047889 7 YRGALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSN--IVIMLIGNKSDLKHLLNSMCEE 64 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~~~vlvgnK~Dl~~~~~v~~~e 64 (72)
++++|++++|+|++.. ++... ..|+..+....+.+ .|+++|+||+|+...+.++.++
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~ 176 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDE 176 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHH
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHH
Confidence 3579999999999764 45444 57887776654333 6999999999997665555544
No 141
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.55 E-value=2.8e-07 Score=58.59 Aligned_cols=57 Identities=21% Similarity=0.074 Sum_probs=42.2
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHH
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIK 68 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~ 68 (72)
..|++.+|++++|+|.+++.+++...-| +.+ .+.|+++|+||+|+... +..++..++
T Consensus 318 ~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~ 374 (482)
T 1xzp_A 318 LQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEK--INEEEIKNK 374 (482)
T ss_dssp HHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCC--CCHHHHHHH
T ss_pred HHHhhcccEEEEEecCCCCCCHHHHHHH-HHh-----cCCCEEEEEECcccccc--cCHHHHHHH
Confidence 4688999999999999999888764322 222 36899999999999753 455555443
No 142
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.53 E-value=2e-08 Score=59.04 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=38.3
Q ss_pred ccchh--hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccccc
Q 047889 3 TSAYY--RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLN 59 (72)
Q Consensus 3 ~~~y~--~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~ 59 (72)
.+.|+ +++|++++|+|.++.+++..+..| +.+ .+.|+++|+||+|+...+.
T Consensus 75 ~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~---~~~pvilv~NK~Dl~~~~~ 127 (256)
T 3iby_A 75 AAQSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE---LGKPVVVALNMMDIAEHRG 127 (256)
T ss_dssp HHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT---SCSCEEEEEECHHHHHHTT
T ss_pred HHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH---cCCCEEEEEEChhcCCcCC
Confidence 45677 899999999999997766554333 332 3689999999999866543
No 143
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.52 E-value=1.2e-07 Score=57.36 Aligned_cols=62 Identities=8% Similarity=-0.052 Sum_probs=43.5
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHH----HHHHhc-CCCCeEEEEeeC-CCCcccccCCHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLK----DLRDHA-GSNIVIMLIGNK-SDLKHLLNSMCEEYL 66 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~----~~~~~~-~~~~~~vlvgnK-~Dl~~~~~v~~~e~~ 66 (72)
+|+.||.++||+|+|.|.+|++.++ .+.-+. .+.+.. ..++|++|.+|| .|++. .++.+|..
T Consensus 203 lWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 203 QIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp HHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred HHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 6789999999999999999998665 322222 222221 257999999997 58864 56666543
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.44 E-value=7.5e-07 Score=54.82 Aligned_cols=51 Identities=25% Similarity=0.146 Sum_probs=42.2
Q ss_pred hhhCCCEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 6 YYRGALGALLVYDVTKST--TFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
+++.+|++++|+|.+++. ++..+..|.+.+......+.|+++|+||+|+..
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 468899999999999987 677777777777665546789999999999865
No 145
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.44 E-value=1e-07 Score=56.40 Aligned_cols=46 Identities=17% Similarity=-0.002 Sum_probs=34.8
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccccc
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLN 59 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~ 59 (72)
+++|++++|+|.++.++... |..++.+. ++|+++|+||+|+.+.+.
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~~ 129 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQN 129 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHTT
T ss_pred cCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhhh
Confidence 69999999999998765544 44444443 589999999999865443
No 146
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.42 E-value=9.2e-08 Score=59.83 Aligned_cols=52 Identities=23% Similarity=0.199 Sum_probs=38.8
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc----CCCC-eEEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA----GSNI-VIMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~-~~vlvgnK~Dl~~ 56 (72)
..+++.+|++++|+|.++ .+|+.+..|..+..++. ...+ |+++++||+|+.+
T Consensus 102 ~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 102 ITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp HHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred HhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 457889999999999998 88887665554444332 1233 6899999999975
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.41 E-value=5.9e-07 Score=56.83 Aligned_cols=50 Identities=20% Similarity=0.116 Sum_probs=37.7
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccccc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLN 59 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~ 59 (72)
..+++++|++++|+|.+++.+... ..|++.+. ..|+++|+||+|+...+.
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~ 347 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQL 347 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGG
T ss_pred hhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchh
Confidence 347889999999999999877655 44544442 369999999999976543
No 148
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.36 E-value=1.1e-06 Score=57.17 Aligned_cols=48 Identities=23% Similarity=0.144 Sum_probs=38.2
Q ss_pred cccchhhCCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 2 ITSAYYRGALGALLVYDVTK---STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
++..+++.+|++++|+|.++ +.+++.+..+ .. .++|+++++||+|+..
T Consensus 86 ~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~---~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 86 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YRTPFVVAANKIDRIH 136 (594)
T ss_dssp SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH---TTCCEEEEEECGGGST
T ss_pred HHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH---cCCeEEEEeccccccc
Confidence 45667888999999999999 7888765532 22 4689999999999964
No 149
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.35 E-value=1.2e-07 Score=59.80 Aligned_cols=53 Identities=17% Similarity=0.040 Sum_probs=35.5
Q ss_pred cchhhCCCEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKS---TTFENVSRWLKDLRDHAGSNIV-IMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-~vlvgnK~Dl~~ 56 (72)
..+++.+|++|+|+|.++. .+|+...+|.+.+......++| +++++||+|+..
T Consensus 139 ~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 139 INGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp ---TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCC
Confidence 4567889999999999985 4555444444444332224577 999999999953
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.35 E-value=5.7e-07 Score=56.91 Aligned_cols=60 Identities=15% Similarity=-0.021 Sum_probs=35.4
Q ss_pred cchhhCCCEEEEEEECCChhhHHHH------HHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENV------SRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEY 65 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~ 65 (72)
..+++++|++++|+|.++..++..+ ......+... ...|+++|+||+|+.+.+....++.
T Consensus 129 ~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i 194 (483)
T 3p26_A 129 IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQRFEEI 194 (483)
T ss_dssp HHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHHHHHHH
T ss_pred HHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHHHHHHH
Confidence 4678999999999999997654332 1122222221 2356999999999976444443433
No 151
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.34 E-value=2.6e-07 Score=52.32 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=35.6
Q ss_pred cchhhC---CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccc
Q 047889 4 SAYYRG---ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLL 58 (72)
Q Consensus 4 ~~y~~~---a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~ 58 (72)
..|++. +|++++|+|.++..+.. -..|+..+.. ...|+++|+||+|+...+
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChh
Confidence 356666 77799999998754422 2345555544 468999999999997543
No 152
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.33 E-value=1e-07 Score=58.51 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=41.3
Q ss_pred chhhCCCEE-----------EEEEECCC-hhhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCcccccCCH--HHHHHHH
Q 047889 5 AYYRGALGA-----------LLVYDVTK-STTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMC--EEYLIKS 69 (72)
Q Consensus 5 ~y~~~a~~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~--~e~~~~a 69 (72)
.|+++++++ +++|++++ ..+|..+. .|+..+ ...+|+++|+||+|+...+.+.. +++.+++
T Consensus 128 ~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~ 203 (361)
T 2qag_A 128 RYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKERERLKKRILDEI 203 (361)
T ss_dssp HHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 566666655 48888887 66777664 454443 36789999999999987665544 4555554
Q ss_pred h
Q 047889 70 R 70 (72)
Q Consensus 70 ~ 70 (72)
+
T Consensus 204 ~ 204 (361)
T 2qag_A 204 E 204 (361)
T ss_dssp T
T ss_pred H
Confidence 3
No 153
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.32 E-value=2.2e-07 Score=57.15 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=38.0
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
.+.++++++++++|+|++++.+ .|.+.+.+.. .+.|+++|+||+||..
T Consensus 65 L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 65 LHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLP 112 (369)
T ss_dssp HHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSC
T ss_pred HHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCC
Confidence 4567889999999999999874 4555555554 4789999999999965
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.32 E-value=1.3e-06 Score=54.65 Aligned_cols=48 Identities=29% Similarity=0.339 Sum_probs=35.2
Q ss_pred ccchhhCCCEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFEN--VSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
+..|+++||++++|+|.++..+... +..|+ +. .+.|+++|+||+|+..
T Consensus 75 ~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l---~~---~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 75 TLNMIREADLVLFVVDGKRGITKEDESLADFL---RK---STVDTILVANKAENLR 124 (439)
T ss_dssp HHHHHTTCSEEEEEEETTTCCCHHHHHHHHHH---HH---HTCCEEEEEESCCSHH
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HH---cCCCEEEEEeCCCCcc
Confidence 3568999999999999987655433 23332 22 2589999999999864
No 155
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.32 E-value=4.4e-07 Score=52.31 Aligned_cols=54 Identities=19% Similarity=0.088 Sum_probs=32.0
Q ss_pred chhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCcccccC
Q 047889 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG--SNIVIMLIGNKSDLKHLLNS 60 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vlvgnK~Dl~~~~~v 60 (72)
.+++++|++++|+|+++...- ...|+..+..... ...|+++|+||+|+...+.+
T Consensus 108 ~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp HTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC-----
T ss_pred hcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccH
Confidence 456788999999998764431 1233333322111 23689999999998654443
No 156
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.28 E-value=3.8e-06 Score=54.72 Aligned_cols=50 Identities=28% Similarity=0.392 Sum_probs=41.0
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
..+++.+|++++|+|.++..++.....|..... .++|+++++||+|+...
T Consensus 91 ~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 91 SRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSA 140 (600)
T ss_dssp HHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTC
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCcccc
Confidence 456789999999999999888888877765442 46899999999999763
No 157
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.28 E-value=1.2e-06 Score=54.80 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=36.1
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
+..+++++|++++|+|.++..++.. .|+..+.+ ..+.|+++|+||+|+..
T Consensus 76 ~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 76 AEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC--
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCcc
Confidence 3568899999999999998766554 23333222 25689999999999865
No 158
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.28 E-value=2.2e-06 Score=55.81 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=40.8
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
..+++.+|++++|+|.++..++.....|..... .++|+++++||+|+...
T Consensus 89 ~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 89 SRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp HHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTC
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCcccc
Confidence 457889999999999999888777777765442 46899999999999764
No 159
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.27 E-value=3.9e-07 Score=53.62 Aligned_cols=52 Identities=19% Similarity=0.024 Sum_probs=36.6
Q ss_pred cchh--hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccC
Q 047889 4 SAYY--RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNS 60 (72)
Q Consensus 4 ~~y~--~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v 60 (72)
+.|+ .++|++++|+|.++.+ ....|..++.+. ...|+++++||+|+.+.+.+
T Consensus 74 ~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~ 127 (271)
T 3k53_A 74 RNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGA 127 (271)
T ss_dssp HHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTC
T ss_pred HHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCccccc
Confidence 4556 6899999999998854 334455555443 23899999999998654433
No 160
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.25 E-value=3.5e-06 Score=52.69 Aligned_cols=57 Identities=19% Similarity=0.133 Sum_probs=40.7
Q ss_pred chhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 047889 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEY 65 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~ 65 (72)
.+++.++++++++|.++..++... .+...+.. .+.|+++|+||+|+.+.+..+.++.
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~ 315 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEF 315 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHH
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHH
Confidence 467889999999999987766542 23333332 4689999999999977655555443
No 161
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.24 E-value=2e-06 Score=53.28 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=42.2
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
..+++++|++++|+|.++..++.+...|+..+.... ..|+++++||+|+.+.
T Consensus 93 ~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 93 LSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSK 144 (403)
T ss_dssp HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCH
T ss_pred HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccch
Confidence 356789999999999999887888888877766553 3589999999999653
No 162
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.23 E-value=1.3e-06 Score=57.58 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=42.0
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLL 58 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~ 58 (72)
+..|++++|++++|+|.+++.+......|...+.. ...|+++|+||+|+....
T Consensus 194 ~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 194 SLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp HTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGG
T ss_pred HHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECccccccc
Confidence 45789999999999999998888877766544432 357899999999996544
No 163
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.21 E-value=9.6e-07 Score=53.86 Aligned_cols=60 Identities=17% Similarity=0.019 Sum_probs=42.1
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHH
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEE 64 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e 64 (72)
...|++++++++++++..+..... ..|+..+........|+++|+||+|+........+.
T Consensus 166 ~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~ 225 (360)
T 3t34_A 166 VRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEI 225 (360)
T ss_dssp HHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHH
T ss_pred HHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHH
Confidence 467899999999999876544322 345555555554578999999999997655544443
No 164
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.20 E-value=3.8e-06 Score=48.84 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=30.1
Q ss_pred hhhCCCEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 6 YYRGALGALLVYDVTKSTTF-ENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
+++++|++++|+|.++.... ..+..|+..+........++++++||+|+..
T Consensus 102 ~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred cCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 78899999999999863322 2223333332211102345566666999974
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.17 E-value=2.3e-06 Score=50.49 Aligned_cols=54 Identities=9% Similarity=-0.030 Sum_probs=37.8
Q ss_pred ccchhhCCCEEE-EEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccccc
Q 047889 3 TSAYYRGALGAL-LVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLN 59 (72)
Q Consensus 3 ~~~y~~~a~~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~ 59 (72)
...|++++++++ +|+|.++..+......|...+. ..+.|+++|+||+|+.+...
T Consensus 155 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~ 209 (299)
T 2aka_B 155 LMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLDLMDEGT 209 (299)
T ss_dssp HHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEECGGGSCTTC
T ss_pred HHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEccccCCCCc
Confidence 346888999887 6899987655444334544443 35689999999999976544
No 166
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.16 E-value=3.8e-06 Score=56.42 Aligned_cols=59 Identities=24% Similarity=0.204 Sum_probs=45.0
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc-cccCCHHHH
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH-LLNSMCEEY 65 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~-~~~v~~~e~ 65 (72)
...+++.+|++++|+|.++..++.....|.... . .++|+++++||+|+.. +...+.+++
T Consensus 115 ~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~~~e~~~~~~e~ 174 (842)
T 1n0u_A 115 VTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRALLELQVSKEDL 174 (842)
T ss_dssp HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHHHHTSCCCHHHH
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcchhhhccCHHHH
Confidence 356889999999999999998888877675333 2 4689999999999863 345555554
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.15 E-value=8.1e-06 Score=52.44 Aligned_cols=49 Identities=22% Similarity=0.099 Sum_probs=39.0
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
..+++.+|++++|+|.++..+......|. .+.. .++|+++++||+|+..
T Consensus 100 ~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 100 YRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp HHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 46889999999999999987777766663 3332 4689999999999964
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.4e-06 Score=56.73 Aligned_cols=55 Identities=15% Similarity=0.010 Sum_probs=33.9
Q ss_pred cchhhCCCEEEEEEECCChh---hHHHHHHHHHHHHHhcCCC-CeEEEEeeCCCCcccc
Q 047889 4 SAYYRGALGALLVYDVTKST---TFENVSRWLKDLRDHAGSN-IVIMLIGNKSDLKHLL 58 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~-~~~vlvgnK~Dl~~~~ 58 (72)
..+++++|++|+|+|.++.. +|.....+...+....... .|+++|+||+|+.+.+
T Consensus 263 ~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 263 IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp TTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred HHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 45788999999999998742 2211122222222222223 4599999999997643
No 169
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.11 E-value=1.4e-05 Score=49.58 Aligned_cols=58 Identities=21% Similarity=0.085 Sum_probs=38.5
Q ss_pred hhCCCEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccccc--CCHHHHHHHHh
Q 047889 7 YRGALGALLVYDVTK----STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLN--SMCEEYLIKSR 70 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~--v~~~e~~~~a~ 70 (72)
...+|++++|+|.++ +.+++.+..| ... ...|+++++||+|+.+... ...++..++++
T Consensus 102 ~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~ 165 (408)
T 1s0u_A 102 ASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK 165 (408)
T ss_dssp CSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHT
T ss_pred HhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence 345699999999994 5566655443 222 2347999999999976433 34556666654
No 170
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.10 E-value=4.1e-06 Score=51.85 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=36.5
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIV-IMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~vlvgnK~Dl~~ 56 (72)
..+++.+|++++|+|.++... .....|+..+... ++| +++++||+|+..
T Consensus 93 ~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 93 ITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVD 142 (405)
T ss_dssp HHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCC
T ss_pred HHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccC
Confidence 456789999999999988654 3445555555443 577 899999999974
No 171
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.09 E-value=2.1e-06 Score=55.33 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=37.6
Q ss_pred cccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 2 ITSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
++..+++.+|++++|+|.++.........| ......++|+++++||+|+.+
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l----~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVESI----QHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHHHH----HHHHTTTCCEEECCBSGGGTT
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHHHH----HHHHHcCCcEEEEEecccccc
Confidence 456788999999999999986554443333 222235689999999999965
No 172
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.08 E-value=6.8e-06 Score=50.84 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=34.7
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIV-IMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~vlvgnK~Dl~~ 56 (72)
..+++.+|++++|+|.++........+| ..+.. .++| +++++||+|+..
T Consensus 84 ~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 84 ITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCS
T ss_pred HhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCC
Confidence 4567899999999999985443333333 33433 3577 789999999974
No 173
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.07 E-value=1.1e-06 Score=56.59 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=39.7
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
..+++.+|++++|+|.++.........|++.+.. ...|+++|+||+|+...
T Consensus 183 ~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 183 RWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGSCH
T ss_pred HHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCccCH
Confidence 3577889999999999886666666677666643 35789999999998653
No 174
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.05 E-value=8.1e-06 Score=48.90 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=38.8
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
..+++.+|++++|+|.++ +.....|+-... .....|+++++||+|+...+....+...+++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l--~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~ 143 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKL--REGKAPVILAVNKVDNVQEKADLLPHLQFLA 143 (301)
T ss_dssp TSCCCCEEEEEEEEETTC---CCHHHHHHHHHH--HSSSSCEEEEEESTTTCCCHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHH--HhcCCCEEEEEECcccCccHHHHHHHHHHHH
Confidence 467789999999999876 333333433322 2256899999999999753232233344443
No 175
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.01 E-value=5.2e-06 Score=52.08 Aligned_cols=52 Identities=19% Similarity=0.065 Sum_probs=33.0
Q ss_pred cchhhCCCEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCc
Q 047889 4 SAYYRGALGALLVYDVTKST---TFENVSRWLKDLRDHAGSNIV-IMLIGNKSDLK 55 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~-~vlvgnK~Dl~ 55 (72)
..+++++|++++|+|.++.. +|+...++.+.+.......+| +++++||+|+.
T Consensus 113 ~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 113 IGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred HhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 45678899999999998753 232222222222222223466 99999999985
No 176
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.01 E-value=5.3e-06 Score=51.12 Aligned_cols=59 Identities=7% Similarity=-0.089 Sum_probs=39.1
Q ss_pred chhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeE-EEEee-CCCCcccccCCH--HHHHHHH
Q 047889 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVI-MLIGN-KSDLKHLLNSMC--EEYLIKS 69 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vlvgn-K~Dl~~~~~v~~--~e~~~~a 69 (72)
.+++.+|++++|+| +...+.+.+.|+..+... .+|. +++.| |+|+ +...+.. ++..+++
T Consensus 79 ~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l 141 (370)
T 2elf_A 79 TALNISDIAVLCIP--PQGLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVIT 141 (370)
T ss_dssp HHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH
Confidence 45688999999999 455566666676666543 3565 77888 9999 5332222 4555544
No 177
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.00 E-value=1.8e-05 Score=50.68 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=35.1
Q ss_pred cccchhhCCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 2 ITSAYYRGALGALLVYDVTK---STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
++..+++.+|++++|+|.++ +.+++.+. .+.. .++|+++++||+|+.+
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~----~~~~---~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQ----HAKA---AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHH----HHHH---TTCCEEEEEECSSSST
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHH----HHHh---cCceEEEEEEeccccc
Confidence 34567788999999999988 45554432 2222 4689999999999964
No 178
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.99 E-value=2.3e-05 Score=49.01 Aligned_cols=50 Identities=16% Similarity=-0.023 Sum_probs=34.7
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
..+++.+|++++|+|.++... .....|+..+... ...|+++|+||+|+.+
T Consensus 122 ~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 122 ATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp HHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred HHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 346889999999999988542 2334444444432 2236999999999975
No 179
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.97 E-value=3e-06 Score=53.42 Aligned_cols=50 Identities=12% Similarity=-0.049 Sum_probs=33.3
Q ss_pred cchhhCCCEEEEEEECCCh---hhHH---HHHHHHHHHHHhcCCCCe-EEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKS---TTFE---NVSRWLKDLRDHAGSNIV-IMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~---~s~~---~~~~~~~~~~~~~~~~~~-~vlvgnK~Dl~~ 56 (72)
..+++.+|++++|+|.++. .+|+ ....++..+.. ..+| +++++||+|+.+
T Consensus 103 ~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 103 ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 3567899999999999875 2442 22222223332 3455 999999999973
No 180
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.93 E-value=8.4e-06 Score=51.20 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=32.2
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
...+++++|++++|+|..+..+ ....|+..+.. ..+.|+++|+||+|+..
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~--~~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVT--AADEEVAKILY--RTKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHT--TCCSCEEEEEECC----
T ss_pred HHhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHH--HcCCCEEEEEECccchh
Confidence 4568899999999999765332 33334333322 25789999999999864
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.93 E-value=2e-05 Score=51.97 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=39.9
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
..+++.+|++++|+|.++..++.....|.. +.. .++|+++++||+|+..
T Consensus 95 ~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 95 ERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp HHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred HHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 467889999999999999888887777753 333 3689999999999975
No 182
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.92 E-value=9.7e-06 Score=50.84 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=41.7
Q ss_pred cccchhhCCCEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCcccccCCH--HHHHHHH
Q 047889 2 ITSAYYRGALGALLVYDVTKS-TTFENVS-RWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMC--EEYLIKS 69 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~--~e~~~~a 69 (72)
+.+.+++++++.+++|..+.. .+|..+. .|+..+. ..+|+++|+||+|+...+.+.. +++.+++
T Consensus 129 IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~ 196 (418)
T 2qag_C 129 VNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEI 196 (418)
T ss_dssp -CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHH
Confidence 345677888887777777654 4676663 5766663 3689999999999876555443 4444443
No 183
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.91 E-value=1.6e-05 Score=46.27 Aligned_cols=48 Identities=23% Similarity=0.345 Sum_probs=32.3
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCcc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG---SNIVIMLIGNKSDLKH 56 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~vlvgnK~Dl~~ 56 (72)
.+++|++++|+|+++....+ ..+++.+.+..+ .+.|++|++||.|+..
T Consensus 103 ~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 103 APGPHALLLVTQLGRFTAQD--QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp TTCCSEEEEEEETTBCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred CCCCCEEEEEEeCCCCCHHH--HHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 38999999999998532211 223333433322 3689999999999965
No 184
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.90 E-value=2.5e-05 Score=49.56 Aligned_cols=46 Identities=28% Similarity=0.137 Sum_probs=34.3
Q ss_pred cchhhCCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTK---STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
..+++.+|++++|+|.++ +.+++.+. .+.. ..+|+++++||+|+.+
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAG 139 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSC
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCccc
Confidence 356789999999999988 55655543 2222 3578899999999975
No 185
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.85 E-value=4.5e-05 Score=47.28 Aligned_cols=57 Identities=18% Similarity=0.046 Sum_probs=36.2
Q ss_pred hhCCCEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccccc--CCHHHHHHHH
Q 047889 7 YRGALGALLVYDVTK----STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLN--SMCEEYLIKS 69 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~--v~~~e~~~~a 69 (72)
...+|++++|+|.++ +.+++.+..| ... ...|+++++||+|+.+... ...++..+++
T Consensus 104 ~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 166 (410)
T 1kk1_A 104 ASLMDGAILVIAANEPCPRPQTREHLMAL----QII--GQKNIIIAQNKIELVDKEKALENYRQIKEFI 166 (410)
T ss_dssp GGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred hhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc--CCCcEEEEEECccCCCHHHHHHHHHHHHHHH
Confidence 345699999999984 4566655433 222 2357999999999975332 2234445544
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.84 E-value=3.2e-05 Score=51.03 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=39.3
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
..+++.+|++++|+|.++..++.....|.. +.. .++|+++++||+|+..
T Consensus 93 ~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 93 ERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred HHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 457889999999999999877777666643 433 3689999999999975
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.84 E-value=2.1e-05 Score=46.73 Aligned_cols=53 Identities=11% Similarity=0.059 Sum_probs=34.1
Q ss_pred cchhhCCCEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCeEEEEeeCCCCccccc
Q 047889 4 SAYYRGALGALLVYDVTKSTTF-ENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLN 59 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~ 59 (72)
..|++++|++++|+|.++.... .....+...+ .....|+++|+||+|+.....
T Consensus 162 ~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 162 MAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp HHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSC
T ss_pred HHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcch
Confidence 4688999999999997543211 1111222222 235689999999999975443
No 188
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.78 E-value=3.1e-05 Score=54.08 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=35.3
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIV-IMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~vlvgnK~Dl~~ 56 (72)
..+++.+|++|+|+|.++.... +...|+..+... ++| +++++||+|+.+
T Consensus 377 i~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 377 ITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCC
T ss_pred HHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccc
Confidence 3567899999999999986432 333444455443 477 799999999975
No 189
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.76 E-value=7.5e-05 Score=49.41 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=38.0
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
..+++.+|++++|+|.++..+......|. .+.. .++|+++++||+|+...
T Consensus 100 ~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 100 ERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred HHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCcccc
Confidence 46788999999999999876665555553 2322 46899999999998653
No 190
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.75 E-value=8.7e-05 Score=47.71 Aligned_cols=50 Identities=16% Similarity=0.052 Sum_probs=34.7
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
..+++.+|++++|+|.++...-. ...++..+ ...++|+++++||+|+...
T Consensus 100 ~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 100 YRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp HHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCccc
Confidence 46789999999999998754322 12222222 2256899999999999753
No 191
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.57 E-value=6.4e-05 Score=44.79 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=34.9
Q ss_pred chhhCCCEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 5 AYYRGALGALLVYDVTKSTTFE--NVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
..+..+|+++.|+|..++.+.. .+..|+ .+.|.++|.||+||.+
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKAD 64 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSC
T ss_pred HHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCC
Confidence 3577899999999999998765 334332 4689999999999965
No 192
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.50 E-value=0.00023 Score=44.64 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=38.7
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCcc
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAG--SNIVIMLIGNKSDLKH 56 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vlvgnK~Dl~~ 56 (72)
..++.++.++|++ ..++..+..|..++..... ...|.++++||+|+..
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 3689999999998 7788888888888766532 3578899999999975
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.47 E-value=0.00027 Score=46.50 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=35.3
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCc
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~ 55 (72)
..+++.+|++++|+|.++.-.... ..++..+.. .++|+++++||+|+.
T Consensus 92 ~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 92 RGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred HHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 467889999999999877544333 344444443 358999999999986
No 194
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.37 E-value=0.00018 Score=44.72 Aligned_cols=18 Identities=28% Similarity=0.135 Sum_probs=15.8
Q ss_pred chhhCCCEEEEEEECCCh
Q 047889 5 AYYRGALGALLVYDVTKS 22 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~ 22 (72)
.+++++|++++|+|.++.
T Consensus 97 ~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 97 DDLRMASALIHVVDATGK 114 (397)
T ss_dssp CSSTTCSEEEEEEETTCC
T ss_pred HHHhcCCEEEEEEecccc
Confidence 457999999999999885
No 195
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.26 E-value=0.00059 Score=38.01 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=31.0
Q ss_pred hCCCEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 8 RGALGALLVYDVTKSTTFEN--VSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
+.++++++++|++++.++.. +..|+ .. ...|+++++||+|+..
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLA 151 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSC
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCC
Confidence 47899999999998766542 23332 21 4588999999999854
No 196
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.24 E-value=1.1e-05 Score=52.31 Aligned_cols=46 Identities=35% Similarity=0.205 Sum_probs=25.0
Q ss_pred cchhhCCCEEEEEEECCCh----------hhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCcc
Q 047889 4 SAYYRGALGALLVYDVTKS----------TTFENVSRWLKDLRDHAGSNIV-IMLIGNKSDLKH 56 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~-~vlvgnK~Dl~~ 56 (72)
..+++.+|++|+|+|.++. .+.+.+ ..+.. ..+| +++|+||+|+..
T Consensus 273 ~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 273 IAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp CC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH---SSCCCEEEEEECGGGGT
T ss_pred HHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHH---cCCCeEEEEEecccccc
Confidence 4577899999999999853 232222 22222 2355 899999999964
No 197
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.16 E-value=0.00041 Score=42.22 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=31.8
Q ss_pred ccchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 3 TSAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 3 ~~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
...|+++++++++++...+. .+... .|...+........|+++|+||+|+.+.
T Consensus 160 ~~~~~~~~~~iiL~v~~a~~-~~~~~-~~~~i~~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 160 LMQFVTKENCLILAVSPANS-DLANS-DALKVAKEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHTSTTEEEEEEEETTS-CGGGC-HHHHHHHHHCTTCTTEEEEEECGGGSCT
T ss_pred HHHHHcCCCeEEEEEecCCC-ccchh-HHHHHHHHhCcCCCceEEEeccccccCc
Confidence 34678888877776643332 12211 1222333333457899999999999654
No 198
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.08 E-value=0.0016 Score=39.37 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=35.3
Q ss_pred hhhCCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 6 YYRGALGALLVYDVTKST-TFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
-..++|.+++|+|..+|. +...+..++-.+. ..++|.++|.||+||.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCch
Confidence 356899999999998765 4554555543332 256888999999999753
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.00049 Score=38.73 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=33.8
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
...+++++|+|.++... ....+. .. ...|+++|+||+|+...+....++..+.+
T Consensus 128 ~~~~~~i~vvd~~~~~~--~~~~~~---~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 181 (221)
T 2wsm_A 128 LGENYRVVMVSVTEGDD--VVEKHP---EI---FRVADLIVINKVALAEAVGADVEKMKADA 181 (221)
T ss_dssp CSCSEEEEEEEGGGCTT--HHHHCH---HH---HHTCSEEEEECGGGHHHHTCCHHHHHHHH
T ss_pred cccCcEEEEEeCCCcch--hhhhhh---hh---hhcCCEEEEecccCCcchhhHHHHHHHHH
Confidence 46788899999876532 111111 11 13688999999999764445566655544
No 200
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.97 E-value=0.00081 Score=39.49 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=27.9
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
+|+++++.+.++......-..+++.+.. .+|+++|+||+|+..
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLT 158 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSC
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCC
Confidence 6788888876653222222334444433 699999999999854
No 201
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.69 E-value=0.00043 Score=40.82 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=32.8
Q ss_pred chhhCCCEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 5 AYYRGALGALLVYDVTKSTTFEN--VSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
....++|.++.|.|..++.+..+ +. + . +.|.++|.||+||.+
T Consensus 17 ~~l~~~D~vl~VvDar~P~~~~~~~l~-l-------l--~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 17 DLLRLVNTVVEVRDARAPFATSAYGVD-F-------S--RKETIILLNKVDIAD 60 (262)
T ss_dssp HHHTTCSEEEEEEETTSTTTTSCTTSC-C-------T--TSEEEEEEECGGGSC
T ss_pred HHHhhCCEEEEEeeCCCCCcCcChHHH-h-------c--CCCcEEEEECccCCC
Confidence 35678999999999999876543 12 2 1 689999999999965
No 202
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.35 E-value=0.011 Score=36.53 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=32.1
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
..++|.+++|.+..-..+...+..++-.... .++|.+||.||+||.+
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCC
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCC
Confidence 3678999999887533355555555544333 3477799999999965
No 203
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.21 E-value=0.00092 Score=40.04 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccccc--CCHHHHHHHHh
Q 047889 24 TFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLN--SMCEEYLIKSR 70 (72)
Q Consensus 24 s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~--v~~~e~~~~a~ 70 (72)
+|+.+.. +.++... ..+|+++|+||.|+...++ +..+++.++++
T Consensus 140 ~Ld~~~~--~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~ 185 (301)
T 2qnr_A 140 GLKPLDV--AFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIE 185 (301)
T ss_dssp SCCHHHH--HHHHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHH--HHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4555431 3333333 5689999999999976443 33456666654
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.02 E-value=0.0076 Score=34.66 Aligned_cols=48 Identities=13% Similarity=-0.060 Sum_probs=26.0
Q ss_pred hhCCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 7 YRGALGALLVYDVTK---STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
+.+ +.++++.|... +..+.....+.... ....+.|+++|+||+|+...
T Consensus 136 ~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 136 LPY-PLVVYISDPEILKKPNDYCFVRFFALLI--DLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp SSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH--HHHHTSCEEEEECCGGGCCH
T ss_pred Hhh-ceEEeccchhhhcCHHHHHHHHHHHHHH--hcccCCCeEEEEeccccccc
Confidence 344 56666666543 33333322221111 11235899999999998754
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.92 E-value=0.0027 Score=35.76 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=20.6
Q ss_pred CeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 43 IVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 43 ~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
.|.++|+||+|+.+.+.+..+++.++++
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 192 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAK 192 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHH
Confidence 4559999999997655566777666554
No 206
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.69 E-value=0.11 Score=32.18 Aligned_cols=16 Identities=13% Similarity=-0.147 Sum_probs=14.6
Q ss_pred hhhCCCEEEEEEECCC
Q 047889 6 YYRGALGALLVYDVTK 21 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~ 21 (72)
+++++|++++|+|.++
T Consensus 93 ~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 93 NIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHTCSEEEEEEECSC
T ss_pred HHHhcCeEEEEEecCC
Confidence 5799999999999986
No 207
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.18 E-value=0.0024 Score=38.93 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=29.0
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
...+|.+++|+|....+.+..+..+ -...|+++|.||+|+..
T Consensus 190 ~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 190 ANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEH 231 (355)
T ss_dssp HTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGG
T ss_pred HHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcC
Confidence 4789999999997765544322210 12368999999999864
No 208
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.16 E-value=0.088 Score=34.10 Aligned_cols=46 Identities=22% Similarity=0.137 Sum_probs=32.2
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
++-+|++++|+|-..----.....| .++.+ .++|.+++-||+|...
T Consensus 121 L~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 121 LTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp HHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred HHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence 4678999999998764333333344 34443 4599999999999865
No 209
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.73 E-value=0.0068 Score=36.79 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=25.6
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
..+.+|++++|+|.+....+..+.. .. .+.|.++|.||+|+..
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDN 208 (341)
T ss_dssp HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTC
T ss_pred HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCC
Confidence 3468999999999876543221111 00 1367899999999865
No 210
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=94.52 E-value=0.063 Score=36.34 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=30.8
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCccc
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHL 57 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~ 57 (72)
..+|.+++|.|.+....-.....+...+ .....|+++|.||+|+...
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L---~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEV---DPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHH---CTTCSSEEEEEECTTSSCT
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHH---HhcCCCEEEEEeCcccCCc
Confidence 4678999999987643322222233333 3356899999999998653
No 211
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.31 E-value=0.045 Score=33.36 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=24.9
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
....+|.+++|+|.++......+.. .+ -..|.++|.||+|+.+
T Consensus 184 l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 184 VADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDL 226 (349)
T ss_dssp HHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGG
T ss_pred HHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCC
Confidence 3467899999999886543322211 11 2357899999999864
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.51 E-value=0.2 Score=33.32 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=30.3
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
++-+||+++|.|...=-.-....-| .++.+. ++|.+++-||+|...
T Consensus 106 Lr~~DgavlvVDaveGV~~qT~~v~-~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 106 LRVLDGAVVVFCGTSGVEPQSETVW-RQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp HHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH---TCCEEEEEECSSSTT
T ss_pred HHHhCeEEEEEECCCCCchhHHHHH-HHHHHc---CCCeEEEEccccccC
Confidence 4558999999998753222222233 334333 589999999999754
No 213
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=90.53 E-value=0.26 Score=32.43 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=30.3
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
.+-+|++++|.|...=-.-.....| .++.+. ++|.+++-||+|...
T Consensus 88 L~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 88 LSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred HHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence 4668999999998753222222333 344443 478899999999754
No 214
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=90.34 E-value=0.65 Score=28.85 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=30.9
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCc
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA--GSNIVIMLIGNKSDLK 55 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~vlvgnK~Dl~ 55 (72)
..+.+|++++|.|.+++.. .......++.... -...|..++.||.|..
T Consensus 146 ~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 3578999999999998743 2222223333322 1456778889999964
No 215
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=87.86 E-value=0.088 Score=33.20 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=26.7
Q ss_pred cchhhCCCEEEEEEECCChhhHHHHHHHHHHHHHh
Q 047889 4 SAYYRGALGALLVYDVTKSTTFENVSRWLKDLRDH 38 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 38 (72)
..|+..+.|.++|+|.++. +++....|.+.+++.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 4567778899999999988 677777887777664
No 216
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.26 E-value=0.52 Score=28.59 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=22.2
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~ 55 (72)
...+|.+++++|.........+..+ +. ..|.+++.||.|+.
T Consensus 166 ~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 166 ADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDG 206 (337)
T ss_dssp HTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTT
T ss_pred HhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhcc
Confidence 3578999999987644322211111 11 23556667999974
No 217
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=83.72 E-value=3.7 Score=22.27 Aligned_cols=47 Identities=0% Similarity=-0.154 Sum_probs=32.8
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHA--GSNIVIMLIGNKSDLK 55 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~vlvgnK~Dl~ 55 (72)
+..+|.++++...+. .+ ..+....+.+.+.. .+..++.+|.|+.+-.
T Consensus 95 l~~ad~viiv~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 95 VMVSDLVIIPVTPSP-LD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp HHHCSEEEEEECSCT-TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred HHHCCEEEEEecCCH-HH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 455888888887654 44 67777777776543 2456779999999854
No 218
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=80.59 E-value=6 Score=22.56 Aligned_cols=46 Identities=11% Similarity=-0.019 Sum_probs=33.3
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
-+..+|.++++... +..++..+....+.+.... .+.++.+|.|+..
T Consensus 163 ~l~~aD~vivv~~~-~~~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 163 ALLCSDYVIIPMTA-EKWAVESLDLFNFFVRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp HHTTCSEEEEEEES-CTTHHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred HHHHCCeEEEEeCC-ChHHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence 34568999999876 5667777777777776653 4567778889984
No 219
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=78.95 E-value=6.5 Score=21.93 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=40.0
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHH
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYL 66 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~ 66 (72)
.+..+|.++++... +..++..+...++.+++...+...+-+|.|+.+-.. ....++..
T Consensus 137 ~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~~~~ 194 (245)
T 3ea0_A 137 VLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSDEIE 194 (245)
T ss_dssp HGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHHHHH
T ss_pred HHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHHHHH
Confidence 35568998888764 578888888888888765433456788899998643 33344443
No 220
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=78.85 E-value=0.99 Score=28.29 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=14.4
Q ss_pred cchhhCCCEEEEEEECCChhhHHH
Q 047889 4 SAYYRGALGALLVYDVTKSTTFEN 27 (72)
Q Consensus 4 ~~y~~~a~~~i~v~d~~~~~s~~~ 27 (72)
..+++++|++++|+|.++.+++.+
T Consensus 111 l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 111 LSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp HHHHHTSSSEEEEEEC--------
T ss_pred HHHHHhcCeEEEEEecCCCcchhh
Confidence 457899999999999987665543
No 221
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=77.23 E-value=5.5 Score=22.43 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=14.6
Q ss_pred hCCCEEEEEEECCChhhH
Q 047889 8 RGALGALLVYDVTKSTTF 25 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~ 25 (72)
.++|.+++.-|+.+....
T Consensus 31 ~~~D~vi~~GDl~~~~~~ 48 (260)
T 2yvt_A 31 KQPDILVVVGNILKNEAL 48 (260)
T ss_dssp HCCSEEEEESCCCCCHHH
T ss_pred cCCCEEEECCCCCCccCc
Confidence 478999999999986543
No 222
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=69.93 E-value=9 Score=23.62 Aligned_cols=16 Identities=13% Similarity=-0.064 Sum_probs=14.5
Q ss_pred hhhCCCEEEEEEECCC
Q 047889 6 YYRGALGALLVYDVTK 21 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~ 21 (72)
+++++|++++|+|.++
T Consensus 96 ~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 96 HIREVAAIAHVLRCFP 111 (368)
T ss_dssp HHHTCSEEEEEEECCC
T ss_pred HHHhCCEEEEEEECCC
Confidence 5799999999999986
No 223
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=68.65 E-value=13 Score=20.60 Aligned_cols=47 Identities=6% Similarity=-0.042 Sum_probs=34.2
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCc
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~ 55 (72)
.+..+|.++++... +..++..+...++.+++.. +.++.+|.|+.+-.
T Consensus 87 ~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 87 LADGCDLLVIPSTP-DALALDALMLTIETLQKLG--NNRFRILLTIIPPY 133 (209)
T ss_dssp HHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCT
T ss_pred HHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc--CCCEEEEEEecCCc
Confidence 45678988888764 5677788777777776643 45688999999864
No 224
>3sf4_D Protein inscuteable homolog; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=68.07 E-value=6.8 Score=17.26 Aligned_cols=30 Identities=23% Similarity=0.498 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeeCCCCc
Q 047889 26 ENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55 (72)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~ 55 (72)
+++++|++.++.......-+++-+.-+-..
T Consensus 9 DSVqrWmeDLr~MTe~ECMcvLQ~Kpi~~e 38 (52)
T 3sf4_D 9 DSVQRWMEDLKLMTECECMCVLQAKPISLE 38 (52)
T ss_dssp HHHHHHHHHHTTCCCCCCSEEEECCCCCCC
T ss_pred HHHHHHHHHHHhhhhceEEEEeecCccCcc
Confidence 568899999988765566666665555443
No 225
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=65.22 E-value=3.9 Score=24.62 Aligned_cols=45 Identities=16% Similarity=0.005 Sum_probs=28.5
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
..+|.+|+.-|+++....+.+..+.+.+.+. +..++++|..--|.
T Consensus 78 ~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l--~~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 78 PYGDILLHTGDFTELGLPSEVKKFNDWLGNL--PYEYKIVIAGNHEL 122 (296)
T ss_dssp CSCSEEEECSCCSSSCCHHHHHHHHHHHHTS--CCSEEEECCCTTCG
T ss_pred CCCCEEEECCcccCCCCHHHHHHHHHHHHhC--CCCeEEEEcCCccc
Confidence 4789999999999876666655555555443 22345554444454
No 226
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=63.69 E-value=19 Score=20.96 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=23.9
Q ss_pred CCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCc
Q 047889 9 GALGALLVYDVTKSTTFENV-SRWLKDLRDHAGSNIVIMLIGNKSDLK 55 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vlvgnK~Dl~ 55 (72)
.+++.+++.|-+.. .+... ...+..+. .. .++++|-+|.|.-
T Consensus 111 Ral~~lllldep~~-gL~~lD~~~l~~L~---~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 111 RVHCCLYFISPTGH-SLRPLDLEFMKHLS---KV-VNIIPVIAKADTM 153 (270)
T ss_dssp SCCEEEEEECCCSS-SCCHHHHHHHHHHH---TT-SEEEEEETTGGGS
T ss_pred eeeeeeEEEecCCC-cCCHHHHHHHHHHH---hc-CcEEEEEeccccC
Confidence 35777777774421 11111 22233332 23 8999999999964
No 227
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=63.55 E-value=6.6 Score=20.19 Aligned_cols=58 Identities=7% Similarity=0.022 Sum_probs=39.7
Q ss_pred CEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 11 LGALLVYDVTK-STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 11 ~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
..-+--|++++ |..|..-+...+.+...+....|+++|-.+.=+.. +-.+.+|..+++
T Consensus 43 Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~~~LP~~~VDGevv~~G-~yPt~eEl~~~l 101 (106)
T 3ktb_A 43 GIIVTRHNLRDEPQVYVSNKTVNDFLQKHGADALPITLVDGEIAVSQ-TYPTTKQMSEWT 101 (106)
T ss_dssp TCCCEEEETTTCTTHHHHSHHHHHHHHTTCGGGCSEEEETTEEEECS-SCCCHHHHHHHH
T ss_pred CCEEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEECCEEEEec-cCCCHHHHHHHh
Confidence 34456677765 55687777766667666556799999887775543 567777777765
No 228
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=61.75 E-value=5.9 Score=14.34 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHh
Q 047889 25 FENVSRWLKDLRDH 38 (72)
Q Consensus 25 ~~~~~~~~~~~~~~ 38 (72)
.++++.|++.++-.
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 46788999988643
No 229
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=61.42 E-value=8.5 Score=19.92 Aligned_cols=58 Identities=5% Similarity=0.033 Sum_probs=40.0
Q ss_pred CEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 11 LGALLVYDVTK-STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 11 ~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
..-+--|++++ |..|..-+...+.+........|+++|-.+.=+.. +--+.+|..+++
T Consensus 40 Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~~~LP~~~VDGevv~~G-~yPt~eEl~~~l 98 (110)
T 3kgk_A 40 GVQIERFNLAQQPMSFVQNEKVKAFIEASGAEGLPLLLLDGETVMAG-RYPKRAELARWF 98 (110)
T ss_dssp TCCEEEEETTTCTTHHHHSHHHHHHHHHHCGGGCCEEEETTEEEEES-SCCCHHHHHHHH
T ss_pred CCeEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEECCEEEEec-cCCCHHHHHHHh
Confidence 34566777766 45687777777777766656799999877775543 556777777664
No 230
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=61.29 E-value=17 Score=19.65 Aligned_cols=44 Identities=9% Similarity=-0.032 Sum_probs=24.3
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHH---hcCCCCeEEEEee
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRD---HAGSNIVIMLIGN 50 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~~vlvgn 50 (72)
+..+|++++.+-+-.-.--..++.|++.+.. ..-.+.++.++++
T Consensus 50 l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t 96 (188)
T 2ark_A 50 VLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSS 96 (188)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEE
T ss_pred HHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEE
Confidence 4467777777766544333445666666543 1123456666655
No 231
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=61.19 E-value=15 Score=19.95 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=25.7
Q ss_pred CCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCeEEE-EeeC
Q 047889 9 GALGALLVYDVTKST-TFENVSRWLKDLRDHAGSNIVIML-IGNK 51 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vl-vgnK 51 (72)
++|.+++.-|+.+.. ..+....+++.+.+. ..|++. .||-
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~---~~pv~~v~GNH 73 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEA---HLPTAYVPGPQ 73 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG---CSCEEEECCTT
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEECCCC
Confidence 789999999998765 555555555555432 356554 4553
No 232
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=60.88 E-value=20 Score=20.26 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=32.2
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGN 50 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgn 50 (72)
++|.+.+.++.....+...++...+.+++... +++|+++=|.
T Consensus 143 ~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 143 KGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp TTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESS
T ss_pred CCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 57888887788888888889999999988753 3677665554
No 233
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=60.28 E-value=15 Score=18.44 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=11.7
Q ss_pred CEEEEEEECCChhhHHHHH
Q 047889 11 LGALLVYDVTKSTTFENVS 29 (72)
Q Consensus 11 ~~~i~v~d~~~~~s~~~~~ 29 (72)
.-++++||+++......+.
T Consensus 3 M~~lV~YDI~~~kr~~kv~ 21 (101)
T 2ivy_A 3 MLYLIFYDITDDNLRNRVA 21 (101)
T ss_dssp EEEEEEEEECCHHHHHHHH
T ss_pred EEEEEEEeCCChHHHHHHH
Confidence 3467788887665444443
No 234
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=59.93 E-value=21 Score=20.01 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=33.6
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC------CCCeEEEEeeCCCCc
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG------SNIVIMLIGNKSDLK 55 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~~~vlvgnK~Dl~ 55 (72)
....+|.++++... +..++..+....+.+..... +...+-+|.|+.+-.
T Consensus 132 ~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 132 ALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp HHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred HHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 34568998888764 57778887777777654321 225678889998853
No 235
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=59.40 E-value=14 Score=18.03 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=12.9
Q ss_pred EEEEEEECCChhhHHHHH
Q 047889 12 GALLVYDVTKSTTFENVS 29 (72)
Q Consensus 12 ~~i~v~d~~~~~s~~~~~ 29 (72)
-++++||+.+......+.
T Consensus 5 ~~lV~YDI~~~kr~~kv~ 22 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRVKLA 22 (90)
T ss_dssp EEEEEEECCCHHHHHHHH
T ss_pred EEEEEEeCCChHHHHHHH
Confidence 478999999875555543
No 236
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=58.93 E-value=7.4 Score=21.38 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=7.9
Q ss_pred hhCCCEEEEEEECCC
Q 047889 7 YRGALGALLVYDVTK 21 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~ 21 (72)
+..+|++|+++-+=+
T Consensus 67 i~~aD~ii~~sP~y~ 81 (197)
T 2vzf_A 67 TCNADGLIVATPIYK 81 (197)
T ss_dssp HHHCSEEEEEEECBT
T ss_pred HHHCCEEEEEeCccC
Confidence 345566666554443
No 237
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=58.33 E-value=25 Score=20.46 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=34.8
Q ss_pred chhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEE-EEeeCCCC
Q 047889 5 AYYRGALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIM-LIGNKSDL 54 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~v-lvgnK~Dl 54 (72)
.....+|.++++.. .+..++..+...++.+.... ..+.+++ +|.|+.+-
T Consensus 175 ~~l~~aD~viiv~~-~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 175 APLQHADQAVVVTA-NDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp GGGGTCSEEEEEEC-SSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHHHHCCEEEEEec-CcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 34567899888875 46778888888777776643 2456654 88999984
No 238
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=56.06 E-value=15 Score=22.67 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=24.8
Q ss_pred hCCCEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCeEEEE-eeC
Q 047889 8 RGALGALLVYDVTKS---TTFENVSRWLKDLRDHAGSNIVIMLI-GNK 51 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~vlv-gnK 51 (72)
.+.|.+++.-|+.+. ..+..+..++..+.. ..+|++.+ ||-
T Consensus 91 ~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~---~~~~~~~v~GNH 135 (443)
T 2xmo_A 91 KKTDVLIISGDLTNNGEKTSHEELAKKLTQVEK---NGTQVFVVPGNH 135 (443)
T ss_dssp HTCSEEEEESCCBSSCCHHHHHHHHHHHHHHHH---TTCEEEEECCTT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEECCcC
Confidence 357899999998764 344444444444432 34776666 763
No 239
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=55.75 E-value=22 Score=19.10 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=25.7
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
++|.+.+... .......++...+.+++...+++++++-|.
T Consensus 69 ~~diV~lS~~--~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~ 108 (161)
T 2yxb_A 69 DVDVIGVSIL--NGAHLHLMKRLMAKLRELGADDIPVVLGGT 108 (161)
T ss_dssp TCSEEEEEES--SSCHHHHHHHHHHHHHHTTCTTSCEEEEEC
T ss_pred CCCEEEEEee--chhhHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4565555443 446677888888888876434677666554
No 240
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=55.12 E-value=18 Score=17.82 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=13.5
Q ss_pred CEEEEEEECCChhhHHHHHH
Q 047889 11 LGALLVYDVTKSTTFENVSR 30 (72)
Q Consensus 11 ~~~i~v~d~~~~~s~~~~~~ 30 (72)
.-++++||+.+...-..+..
T Consensus 4 M~vlV~YDI~~~krr~kv~k 23 (91)
T 3exc_X 4 MKLLVVYDVSDDSKRNKLAN 23 (91)
T ss_dssp CEEEEEEECCSHHHHHHHHH
T ss_pred eEEEEEEeCCCchHHHHHHH
Confidence 45799999998654444433
No 241
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=55.09 E-value=6.9 Score=20.95 Aligned_cols=12 Identities=17% Similarity=-0.000 Sum_probs=5.6
Q ss_pred hCCCEEEEEEEC
Q 047889 8 RGALGALLVYDV 19 (72)
Q Consensus 8 ~~a~~~i~v~d~ 19 (72)
..+|++|+..-+
T Consensus 62 ~~aD~ii~~tP~ 73 (174)
T 3gfs_A 62 TKADAIVLLSPE 73 (174)
T ss_dssp HHCSSEEEEEEC
T ss_pred HHCCEEEEEcCC
Confidence 344555554443
No 242
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=54.61 E-value=28 Score=19.82 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=28.6
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDL 54 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~v-lvgnK~Dl 54 (72)
.+|.++++...+ ..++..+...++.+++. +.+++ +|.|+.|.
T Consensus 152 ~aD~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 152 KPTGVVVVSTPQ-ELTAVIVEKAINMAEET---NTSVLGLVENMSYF 194 (262)
T ss_dssp CCSEEEEEECSS-SCCHHHHHHHHHHHHTT---TCCEEEEEETTCCE
T ss_pred cCCeEEEEecCc-cchHHHHHHHHHHHHhC---CCCEEEEEECCCcc
Confidence 588888887644 55666776666666543 45655 88999874
No 243
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=54.13 E-value=39 Score=21.42 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=13.2
Q ss_pred CCCeEEEEeeCCCCc
Q 047889 41 SNIVIMLIGNKSDLK 55 (72)
Q Consensus 41 ~~~~~vlvgnK~Dl~ 55 (72)
..+|+++|.||.|.-
T Consensus 175 ~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 175 SKVNIIPIIAKADAI 189 (427)
T ss_dssp SCSEEEEEESCGGGS
T ss_pred hCCCEEEEEcchhcc
Confidence 678999999999964
No 244
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=53.84 E-value=18 Score=20.04 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=20.3
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
+..||++|++.-+=+-.--..++.|++.+....-.+.|+.++++
T Consensus 83 i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t 126 (191)
T 3k1y_A 83 LSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAAT 126 (191)
T ss_dssp HHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEE
T ss_pred HHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEe
Confidence 34567777765444433223334454444321113455555554
No 245
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=53.60 E-value=20 Score=17.94 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=23.6
Q ss_pred hhCCCEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCeEEEEeeC
Q 047889 7 YRGALGALLVYDVTKSTTFEN--VSRWLKDLRDHAGSNIVIMLIGNK 51 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vlvgnK 51 (72)
+..+|+++++..+-.-.-... ++.+++.+... -.+.++.++|+-
T Consensus 44 l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~-l~~k~~~~~~t~ 89 (137)
T 2fz5_A 44 VASKDVILLGCPAMGSEELEDSVVEPFFTDLAPK-LKGKKVGLFGSY 89 (137)
T ss_dssp HHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGG-CSSCEEEEEEEE
T ss_pred HhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhh-cCCCEEEEEEec
Confidence 456788888766543221111 44555555332 245677777763
No 246
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=52.99 E-value=27 Score=19.23 Aligned_cols=46 Identities=11% Similarity=-0.096 Sum_probs=31.9
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
.+..+|.++++... +..++..+....+.+.+.. -..+.++.|+.+-
T Consensus 150 ~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 150 TAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGDLG--IKKVRYVINKVRN 195 (254)
T ss_dssp HHTTCSEEEEEECS-SHHHHHHHHHHHHHHHHHT--CSCEEEEEEEECC
T ss_pred HHHHCCEEEEecCC-CHHHHHHHHHHHHHHHHcC--CccEEEEEeCCCC
Confidence 35678998888875 5777777777666555443 2456788899873
No 247
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=52.23 E-value=24 Score=18.38 Aligned_cols=40 Identities=13% Similarity=0.009 Sum_probs=25.0
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
++|.+.+.... ......++...+.+++....++++++-|.
T Consensus 54 ~~d~v~lS~~~--~~~~~~~~~~i~~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 54 KADAILVSSLY--GQGEIDCKGLRQKCDEAGLEGILLYVGGN 93 (137)
T ss_dssp TCSEEEEEECS--STHHHHHTTHHHHHHHTTCTTCEEEEEES
T ss_pred CCCEEEEEecC--cCcHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 56666655544 45566777788888776534566655443
No 248
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=51.96 E-value=23 Score=21.20 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=26.8
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
++|+++++--. ...+-+.+..|+..+-+..++++|+++-
T Consensus 102 Gadavlv~~P~-~~~s~~~l~~~f~~va~a~~~~lPiilY 140 (313)
T 3dz1_A 102 GAAGVMIAPPP-SLRTDEQITTYFRQATEAIGDDVPWVLQ 140 (313)
T ss_dssp TCSEEEECCCT-TCCSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCEEEECCCC-CCCCHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 78888876433 3346677777888887665445898875
No 249
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=51.91 E-value=35 Score=20.76 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=25.7
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeC
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNK 51 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK 51 (72)
+..+|++++..-+-.-.-...++.+++.+..... .+.++.++++-
T Consensus 305 l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~ 350 (414)
T 2q9u_A 305 TYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFGAF 350 (414)
T ss_dssp HHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEE
T ss_pred HHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEEec
Confidence 5578888887665554333345566666554332 34566666553
No 250
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=51.91 E-value=25 Score=19.50 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=5.6
Q ss_pred hCCCEEEEEEE
Q 047889 8 RGALGALLVYD 18 (72)
Q Consensus 8 ~~a~~~i~v~d 18 (72)
..||++|++.-
T Consensus 72 ~~AD~iVi~tP 82 (199)
T 4hs4_A 72 ATADAVVIVTP 82 (199)
T ss_dssp HHSSEEEEEEC
T ss_pred HhCCEEEEEcC
Confidence 34555555543
No 251
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=50.96 E-value=36 Score=22.00 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCcc
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVI-MLIGNKSDLKH 56 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vlvgnK~Dl~~ 56 (72)
.+|.+++|.|.+....... ....+.+. +|+ .+|.||.|...
T Consensus 213 ~pd~vllVvDa~~g~~~~~---~a~~~~~~----~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 213 QPDNIVYVMDASIGQACEA---QAKAFKDK----VDVASVIVTKLDGHA 254 (504)
T ss_dssp CCSEEEEEEETTCCTTHHH---HHHHHHHH----HCCCCEEEECTTSCC
T ss_pred cCceEEEEEeccccccHHH---HHHHHHhh----cCceEEEEeCCcccc
Confidence 6899999999876433111 12222221 564 78889999864
No 252
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=49.77 E-value=23 Score=17.42 Aligned_cols=43 Identities=19% Similarity=0.344 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCCCe-EEEEeeC--------------CCCcccccCCHHHHHHHHh
Q 047889 27 NVSRWLKDLRDHAGSNIV-IMLIGNK--------------SDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~-~vlvgnK--------------~Dl~~~~~v~~~e~~~~a~ 70 (72)
.++.++++++..+ .++. .++|.|. +|......-++.++..|.+
T Consensus 37 elkkyleefrkes-qnikvlilvsndeeldkakelaqkmeidvrtrkvtspdeakrwik 94 (110)
T 2kpo_A 37 ELKKYLEEFRKES-QNIKVLILVSNDEELDKAKELAQKMEIDVRTRKVTSPDEAKRWIK 94 (110)
T ss_dssp HHHHHHHHHTSST-TSEEEEEEESSHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-cCeEEEEEEcChHHHHHHHHHHHhhceeeeeeecCChHHHHHHHH
Confidence 3456666665544 4444 4555552 2333333456777777654
No 253
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=48.03 E-value=38 Score=19.50 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=29.0
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHH---hcCCCCe-EEEEeeCCCCc
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRD---HAGSNIV-IMLIGNKSDLK 55 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~-~vlvgnK~Dl~ 55 (72)
..+|.++++... +..++..+...++.+.+ ....+.+ +-+|.|+.|..
T Consensus 175 ~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 175 VASDYVMIPLQA-EEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp HHCSEEEEEECG-GGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred HHCCeEEEEecC-cHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 357888888764 34556665555444433 2234566 45888999864
No 254
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=46.91 E-value=17 Score=19.47 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=17.4
Q ss_pred CCCCeEEEEeeCCCCcccccCCHHH
Q 047889 40 GSNIVIMLIGNKSDLKHLLNSMCEE 64 (72)
Q Consensus 40 ~~~~~~vlvgnK~Dl~~~~~v~~~e 64 (72)
+...|+++|+.|-|+.. ++.+.+|
T Consensus 56 P~K~PiLLvAG~DDm~M-CELsLee 79 (141)
T 3h8d_A 56 PDKPPILLVAGKDDMEM-CELNLEE 79 (141)
T ss_dssp SSSCCEEEETTTTTTTS-CCSCHHH
T ss_pred CCCCCeEEecCcchHHH-hhcchhh
Confidence 46789999999988743 5555554
No 255
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=46.64 E-value=48 Score=20.30 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCEEEEEEECCChh----------hHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 10 ALGALLVYDVTKST----------TFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 10 a~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
...++++|++-+++ +.+.=+.|++.+.... .+.++++|
T Consensus 90 ~~pvlVvY~lP~RDC~a~ssgG~~~~~~Yk~~Id~ia~~i-~~~~~vvI 137 (315)
T 1uoz_A 90 AMPVLTLYGIPHRDCGSYASGGFATGTDYRGWIDAVASGL-GSSPATII 137 (315)
T ss_dssp CBCEEEECCCTTBGGGSTTCBCCSSHHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCcEEEEeCCCCCCchhhccCCCCCHHHHHHHHHHHHHHh-CCCceEEE
Confidence 34578999998875 4555578888876655 33455444
No 256
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=46.48 E-value=35 Score=18.90 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 32 LKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 32 ~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++.+....+.++|+++.|-+.|-..+.--...+..++|.
T Consensus 98 v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD 136 (191)
T 1xx6_A 98 VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAE 136 (191)
T ss_dssp HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCS
T ss_pred HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcc
Confidence 344444333578999999999876543344455555543
No 257
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=46.43 E-value=38 Score=19.10 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=30.6
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHH---hcCCCCeEE-EEeeCCCCc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRD---HAGSNIVIM-LIGNKSDLK 55 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~~v-lvgnK~Dl~ 55 (72)
+..+|.++++...+ ..++..+....+.+.+ ....+.+++ +|.|+.+-.
T Consensus 131 l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 131 LAAAEGVVVPVQAE-YYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHHCSEEEEEEESS-THHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HHHCCeEEEEecCc-hHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 44689999998754 5566665555444433 223566764 889998754
No 258
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=46.04 E-value=29 Score=17.54 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=23.4
Q ss_pred hhCCCEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCeEEEEee
Q 047889 7 YRGALGALLVYDVTKSTTFE--NVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
+..+|++++...+-.-.-+. .+..+++.+... ..+.++.++|+
T Consensus 43 l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~t 87 (138)
T 5nul_A 43 LLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFGS 87 (138)
T ss_dssp HTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEEE
T ss_pred HhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEEe
Confidence 45678888877654322111 244455555433 34567777765
No 259
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=45.29 E-value=35 Score=18.31 Aligned_cols=45 Identities=7% Similarity=-0.017 Sum_probs=25.3
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHh----cCCCCeEEEEeeC
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDH----AGSNIVIMLIGNK 51 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~vlvgnK 51 (72)
+..+|++|+.+-+-.-.--..++.|++.+... .-.+.|+.++++-
T Consensus 69 l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~ 117 (200)
T 2a5l_A 69 LKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTST 117 (200)
T ss_dssp HHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEB
T ss_pred HHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEec
Confidence 56789999987765533333445565554331 1144566666553
No 260
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}
Probab=44.89 E-value=23 Score=21.72 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=30.7
Q ss_pred hhCCCEEEEEEECCChhh------HHH----HHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 7 YRGALGALLVYDVTKSTT------FEN----VSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s------~~~----~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
++++|.+|++-.+..+.. |.. ++...+.+.++..+++.+++++|=.|.
T Consensus 98 ~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~ 155 (345)
T 4h7p_A 98 FDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANT 155 (345)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcch
Confidence 678999999877655322 211 234444555555567778889997774
No 261
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=44.37 E-value=45 Score=19.32 Aligned_cols=46 Identities=7% Similarity=0.053 Sum_probs=29.0
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCcc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIM-LIGNKSDLKH 56 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~v-lvgnK~Dl~~ 56 (72)
...+|++++|.... ..+...+....+.+.+. ..+++ +|.|+.|...
T Consensus 212 ~~~aD~vilVv~~~-~~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 212 SKFTGNVVYVVNSE-NNNKDEVKKGKELIEAT---GAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHHCEEEEEEETT-SCCHHHHHHHHHHHHTT---TCEEEEEEEEEECC--
T ss_pred HHHCCEEEEEEeCC-CCcHHHHHHHHHHHHhC---CCCEEEEEEeCCcCCC
Confidence 34678999988753 45566666666666543 34544 7889998653
No 262
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=44.15 E-value=34 Score=17.87 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHH
Q 047889 28 VSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIK 68 (72)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~ 68 (72)
+.......+...-..+|.++|..|.=.......+.++..++
T Consensus 136 v~~~~~~a~~~gv~gTPtfiINGky~v~~~~~~s~e~~~~~ 176 (184)
T 4dvc_A 136 VHRFDKQFQDSGLTGVPAVVVNNRYLVQGQSAKSLDEYFDL 176 (184)
T ss_dssp HHHHHHHHHHHTCCSSSEEEETTTEEECGGGCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCEEEECCEEeeCCcCCCCHHHHHHH
Confidence 33444444444447899999987732222223455555443
No 263
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=44.00 E-value=41 Score=18.70 Aligned_cols=30 Identities=7% Similarity=0.196 Sum_probs=23.9
Q ss_pred chhhCCCEEEEEEECCChhhHHHHHHHHHH
Q 047889 5 AYYRGALGALLVYDVTKSTTFENVSRWLKD 34 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~~~~~~~~~ 34 (72)
.+|+++-.+++-+...|.++++++...+..
T Consensus 76 ~~fknSk~VvF~~t~~d~E~L~sL~~~Mt~ 105 (166)
T 2ky6_A 76 PLFRNSRMVQFHFTNKDLESLKGLYRIMGN 105 (166)
T ss_dssp GGGSSEEEEEEEECSSCHHHHHHHHHHHHH
T ss_pred HHhhcCeEEEEecCCCchHHHHHHHHHhhc
Confidence 377999888888888889999988665543
No 264
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=43.55 E-value=18 Score=19.64 Aligned_cols=6 Identities=33% Similarity=0.207 Sum_probs=2.3
Q ss_pred CCEEEE
Q 047889 10 ALGALL 15 (72)
Q Consensus 10 a~~~i~ 15 (72)
+|++|+
T Consensus 73 aD~ii~ 78 (193)
T 1rtt_A 73 ADALLF 78 (193)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 333333
No 265
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=43.33 E-value=49 Score=19.68 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=27.6
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEe
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIG 49 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvg 49 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +++|+++-=
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~~lPiilYn 145 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA-DGLPMVVYN 145 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHhC-CCCCEEEEe
Confidence 37899888765544556677777777776654 248887753
No 266
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=41.98 E-value=31 Score=17.26 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=9.6
Q ss_pred CEEEEEEECCCh
Q 047889 11 LGALLVYDVTKS 22 (72)
Q Consensus 11 ~~~i~v~d~~~~ 22 (72)
.-++++||+.+.
T Consensus 8 M~vlV~YDI~~~ 19 (103)
T 3oq2_A 8 MLVLISYDVSFE 19 (103)
T ss_dssp EEEEEEEECCTT
T ss_pred EEEEEEEECCCC
Confidence 367889999875
No 267
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=41.34 E-value=49 Score=18.90 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 33 KDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 33 ~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
+.+....+.++|+++.|-+.|-..+.=-...+..++|.
T Consensus 119 ~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD 156 (214)
T 2j9r_A 119 EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAE 156 (214)
T ss_dssp HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCS
T ss_pred HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcc
Confidence 34444333578999999999987654444555555543
No 268
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=41.09 E-value=36 Score=18.23 Aligned_cols=29 Identities=7% Similarity=-0.153 Sum_probs=14.7
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHH
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDL 35 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~ 35 (72)
+..+|++|+++-+=.-.--..++.|++.+
T Consensus 82 l~~aD~iI~~sP~y~~~~p~~lK~~iD~~ 110 (191)
T 1t0i_A 82 VNALDIIVFVTPQYNWGYPAALKNAIDRL 110 (191)
T ss_dssp HHTCSEEEEEEECBTTBCCHHHHHHHHTC
T ss_pred HHhCCEEEEEeceECCCCCHHHHHHHHHH
Confidence 45677777766554432222344455444
No 269
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=40.76 E-value=46 Score=18.40 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=27.6
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~D 53 (72)
++|++.+ +.....+...++...+.+++... +++|+++-|.-.+
T Consensus 139 ~~d~v~l--S~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~ 182 (210)
T 1y80_A 139 QPDIVGM--SALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLS 182 (210)
T ss_dssp CCSEEEE--ECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCC
T ss_pred CCCEEEE--eccccccHHHHHHHHHHHHhcCCCCCCeEEEECCCCC
Confidence 4555444 44455677888888888887643 4578777665543
No 270
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=40.68 E-value=40 Score=17.80 Aligned_cols=30 Identities=0% Similarity=-0.161 Sum_probs=19.5
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHH
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDL 35 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~ 35 (72)
-+..+|++|+.+-+=.-.--..++.|++.+
T Consensus 68 ~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~ 97 (184)
T 1rli_A 68 RILQCHILIFATPIYWFGMSGTLKLFIDRW 97 (184)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTH
T ss_pred HHHhCCEEEEEeCccccCCcHHHHHHHHHh
Confidence 356899999988766544333455666654
No 271
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=40.61 E-value=24 Score=21.26 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=23.2
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCeEEEEee
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAG---SNIVIMLIGN 50 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~vlvgn 50 (72)
+..+|+++++.-+-+-.-...++.+++.+..... .+.|+.++++
T Consensus 305 l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~~~ 351 (404)
T 2ohh_A 305 ILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGS 351 (404)
T ss_dssp HHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEEEE
T ss_pred HHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEEEe
Confidence 5578888887654332222234555555543222 4556666665
No 272
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=40.12 E-value=57 Score=19.27 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=26.3
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 97 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilY 134 (292)
T 3daq_A 97 GADAIMLITPYYNKTNQRGLVKHFEAIADAV--KLPVVLY 134 (292)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 7899888854444445567777777776654 6888875
No 273
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=39.83 E-value=48 Score=18.67 Aligned_cols=29 Identities=3% Similarity=-0.010 Sum_probs=18.1
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHH
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDL 35 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~ 35 (72)
+..||++|+.+-+=.-.--..++.|++.+
T Consensus 77 l~~AD~iI~~sP~y~~~~p~~lK~~iDr~ 105 (242)
T 1sqs_A 77 LLESDIIIISSPVYLQNVSVDTKNFIERI 105 (242)
T ss_dssp HHHCSEEEEEEEECSSSCCHHHHHHHHHT
T ss_pred HHHCCEEEEEccccccCCCHHHHHHHHHH
Confidence 45688888877665543334455666665
No 274
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=39.76 E-value=51 Score=18.77 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=20.1
Q ss_pred CCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 41 SNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 41 ~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
.++|++++|-..|...+.--...+...+|.
T Consensus 115 ~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD 144 (223)
T 2b8t_A 115 NGFVVIISGLDKNFKGEPFGPIAKLFTYAD 144 (223)
T ss_dssp TTCEEEEECCSBCTTSSBCTTHHHHHHHCS
T ss_pred CCCeEEEEeccccccCCcCCCcHHHHHHhh
Confidence 479999999999986543333455555543
No 275
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=39.56 E-value=28 Score=20.17 Aligned_cols=41 Identities=7% Similarity=0.201 Sum_probs=24.7
Q ss_pred hCCCEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCeEEE-Eee
Q 047889 8 RGALGALLVYDVTKS---TTFENVSRWLKDLRDHAGSNIVIML-IGN 50 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~vl-vgn 50 (72)
.++|.+++.-|+.+. +.+..+..+++.+... ..+|+++ .||
T Consensus 65 ~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~--~~~pv~~v~GN 109 (330)
T 3ib7_A 65 LRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQ--LGAELVWVMGN 109 (330)
T ss_dssp CCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHH--HTCEEEECCCT
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhh--cCCCEEEeCCC
Confidence 368999999999874 4455555555555332 1356544 455
No 276
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=39.31 E-value=33 Score=20.68 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=31.2
Q ss_pred chhhCCCEEEEEEECCChh------hH----HHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 5 AYYRGALGALLVYDVTKST------TF----ENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~------s~----~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
.-+.+||.+|+........ .| .-++...+.+.+.. ++..+++++|=+|.
T Consensus 69 ~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~ 127 (321)
T 3p7m_A 69 KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDI 127 (321)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHH
Confidence 3467899999986554322 12 22345556666665 67778888887775
No 277
>3hxl_A Uncharacterized protein DSY3957; alpha-beta three-domained protein., structural genomics, PSI protein structure initiative; 1.90A {Desulfitobacterium hafniense}
Probab=39.14 E-value=72 Score=20.36 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=25.5
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 047889 14 LLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNK 51 (72)
Q Consensus 14 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK 51 (72)
+++++.++......+..|++.+++.. ....+.++|+.
T Consensus 202 ~i~~p~~d~~~~~~l~a~ikr~r~~~-g~~~~aV~g~~ 238 (446)
T 3hxl_A 202 TIALPSTDDALKATFTAFAKRLRDDE-GKKIQVVLENY 238 (446)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHT-CCCCEEEEESC
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEcCC
Confidence 45666688888888899999888732 33444555653
No 278
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=39.10 E-value=60 Score=19.27 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=35.7
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
.++|+++++--.-.+.+-+.+..+++.+-+.. +.|+++-=+-. .....++.+...+++
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilYn~P~--~tg~~l~~~~~~~La 155 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADAV--EIPVVIYTNPQ--FQRSDLTLDVIARLA 155 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC--SSCEEEEECTT--TCSSCCCHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECcc--ccCCCCCHHHHHHHH
Confidence 37899988865555556677777888876654 48887753211 122345556555554
No 279
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=38.71 E-value=63 Score=19.37 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=26.9
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 155 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEAV--AIPQILY 155 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS--CSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 37899888854444445567777777776653 6888875
No 280
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=38.64 E-value=62 Score=19.22 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=26.8
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 140 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQSV--DIPVLLY 140 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 37899888854444445577777777776654 6888875
No 281
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=37.93 E-value=4.8 Score=20.02 Aligned_cols=18 Identities=39% Similarity=0.804 Sum_probs=14.3
Q ss_pred CCChhhHHHHHHHHHHHH
Q 047889 19 VTKSTTFENVSRWLKDLR 36 (72)
Q Consensus 19 ~~~~~s~~~~~~~~~~~~ 36 (72)
.+++..+.+++.|+..++
T Consensus 12 ~~d~~~~~~V~~WL~sLr 29 (88)
T 2d3d_A 12 LTDPKLLKNIPMWLKSLR 29 (88)
T ss_dssp HTCHHHHTCHHHHHHHTT
T ss_pred ccCccccccHHHHHHHcc
Confidence 457788899999998764
No 282
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=37.48 E-value=41 Score=18.34 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=26.1
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhc----------CCCCeEEEEeeC
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHA----------GSNIVIMLIGNK 51 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----------~~~~~~vlvgnK 51 (72)
+..||++|+..-+=+-.--..++.|++.+.... -.+.|+.++++-
T Consensus 65 i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~ 119 (192)
T 3fvw_A 65 VQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVA 119 (192)
T ss_dssp HHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEES
T ss_pred HHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeC
Confidence 567899999865544333334566777765311 134666666543
No 283
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=37.35 E-value=64 Score=19.03 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=26.4
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilY 133 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEAV--ELPLILY 133 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 37899888754434445567777777776653 6888875
No 284
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=37.16 E-value=41 Score=16.82 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=15.9
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|.+++-+++.+...++-++ .+++. .+.+|++++....+
T Consensus 51 ~dlvi~d~~l~~~~g~~~~~----~l~~~-~~~~~ii~ls~~~~ 89 (154)
T 2qsj_A 51 VDLILLDVNLPDAEAIDGLV----RLKRF-DPSNAVALISGETD 89 (154)
T ss_dssp CSEEEECC------CHHHHH----HHHHH-CTTSEEEEC-----
T ss_pred CCEEEEeCCCCCCchHHHHH----HHHHh-CCCCeEEEEeCCCC
Confidence 46666555555544444333 34443 35788888776554
No 285
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=37.09 E-value=42 Score=16.86 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=23.1
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|.+++-+++.+...++-+. .++.. .+.+|++++....+
T Consensus 48 ~dliild~~l~~~~g~~~~~----~l~~~-~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 48 AGIVISDIRMPGMDGLALFR----KILAL-DPDLPMILVTGHGD 86 (155)
T ss_dssp CSEEEEESCCSSSCHHHHHH----HHHHH-CTTSCEEEEECGGG
T ss_pred CCEEEEeCCCCCCCHHHHHH----HHHhh-CCCCCEEEEECCCC
Confidence 46666666665555554433 33433 36789888876655
No 286
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=37.01 E-value=39 Score=16.46 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=17.1
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 15 LVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 15 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
++|++++++.+...-.....+.+.. ++..+.++
T Consensus 3 vv~~v~d~~~~~~al~~~~n~~~~~-~~~~v~vv 35 (108)
T 2pd2_A 3 VVVQIKDFDKVPQALRSVINLYNDI-KDAEIEVV 35 (108)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHHS-TTCEEEEE
T ss_pred EEEEeCChHHHHHHHHHHHHHHhhC-CCCeEEEE
Confidence 4556667777666554444444332 34444444
No 287
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=36.85 E-value=60 Score=20.74 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=23.3
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCC
Q 047889 14 LLVYDVTKSTTFENVSRWLKDLRDHAGS 41 (72)
Q Consensus 14 i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 41 (72)
-.+.|++|+.|...-..|..++......
T Consensus 299 ~~~VDl~d~~s~~~a~~WW~~lT~~GgE 326 (427)
T 4e6n_A 299 HILVDVTDAESVDKGIKWWEDLTASGGE 326 (427)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEeeCCCHHHHHHHHHHHHHHhcCCCc
Confidence 3577999999999999999999876543
No 288
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=36.73 E-value=57 Score=18.28 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=31.7
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~ 55 (72)
...+|.++++.. .+..++..+...++.+.+. ...++-+|.|+.+-.
T Consensus 130 ~~~ad~vi~v~~-~~~~~~~~~~~~~~~l~~~--~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 130 IAAAQELLLVVN-PEISSITDGLKTKIVAERL--GTKVLGVVVNRITTL 175 (263)
T ss_dssp HHHSSEEEEEEC-SSHHHHHHHHHHHHHHHHH--TCEEEEEEEEEECTT
T ss_pred HHHCCEEEEEeC-CChhHHHHHHHHHHHHHhc--CCCeeEEEEccCCcc
Confidence 456788888876 3566777777777777665 224456788998854
No 289
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=36.59 E-value=35 Score=18.28 Aligned_cols=30 Identities=3% Similarity=-0.086 Sum_probs=15.7
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHH
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDL 35 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~ 35 (72)
-+..+|++|+.+-+-.-.--..++.|++.+
T Consensus 65 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~ 94 (198)
T 3b6i_A 65 ELADYDAIIFGTPTRFGNMSGQMRTFLDQT 94 (198)
T ss_dssp GGGGCSEEEEEEEEETTEECHHHHHHHTTC
T ss_pred HHHHCCEEEEEeChhcCCchHHHHHHHHHh
Confidence 355678888876544332223344454444
No 290
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=36.51 E-value=60 Score=19.36 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=26.5
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+. .+.|+++-
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a--~~lPiilY 147 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADA--TELPMLLY 147 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTS--CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEE
Confidence 3789988875444444666777777777654 36898876
No 291
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=36.39 E-value=55 Score=17.97 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=6.5
Q ss_pred hCCCEEEEEEEC
Q 047889 8 RGALGALLVYDV 19 (72)
Q Consensus 8 ~~a~~~i~v~d~ 19 (72)
..||++|++.-.
T Consensus 71 ~~AD~iv~~sP~ 82 (193)
T 3svl_A 71 RQADGVVIVTPE 82 (193)
T ss_dssp HHSSEEEEEECC
T ss_pred HHCCEEEEEecc
Confidence 445666665443
No 292
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=36.37 E-value=51 Score=17.67 Aligned_cols=44 Identities=9% Similarity=-0.058 Sum_probs=24.7
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHh----cCCCCeEEEEee
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDH----AGSNIVIMLIGN 50 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~vlvgn 50 (72)
+..+|++|+.+-+=.-.--..++.|++.+... .-.+.|+.++++
T Consensus 68 l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t 115 (199)
T 2zki_A 68 MRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTE 115 (199)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEE
T ss_pred HHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEe
Confidence 55789999987665533333455666654321 123456666554
No 293
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=36.14 E-value=38 Score=16.28 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=7.4
Q ss_pred EEEEEECCC
Q 047889 13 ALLVYDVTK 21 (72)
Q Consensus 13 ~i~v~d~~~ 21 (72)
++++||+++
T Consensus 3 vlv~YDI~~ 11 (85)
T 2i0x_A 3 IVVVYDVGV 11 (85)
T ss_dssp EEEEEECCS
T ss_pred EEEEeeCCh
Confidence 678889887
No 294
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=35.96 E-value=41 Score=16.38 Aligned_cols=41 Identities=7% Similarity=0.214 Sum_probs=22.7
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
.|.+++-+++.+...++- ...+++...+.+|++++....+.
T Consensus 53 ~dlvi~D~~l~~~~g~~~----~~~l~~~~~~~~~ii~~s~~~~~ 93 (136)
T 3hdv_A 53 IGLMITDLRMQPESGLDL----IRTIRASERAALSIIVVSGDTDV 93 (136)
T ss_dssp EEEEEECSCCSSSCHHHH----HHHHHTSTTTTCEEEEEESSCCH
T ss_pred CcEEEEeccCCCCCHHHH----HHHHHhcCCCCCCEEEEeCCCCh
Confidence 344444445555555543 33444432367888888876653
No 295
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=35.94 E-value=32 Score=20.48 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=30.1
Q ss_pred hhhCCCEEEEEEECCChh---h---H----HHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 6 YYRGALGALLVYDVTKST---T---F----ENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~---s---~----~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
-++++|.+++........ . | .-++...+.+.+.. ++..+++++|=+|.
T Consensus 66 a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvsNPvd~ 123 (294)
T 1oju_A 66 LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDV 123 (294)
T ss_dssp GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHH
T ss_pred HhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcchH
Confidence 467899999987665322 1 1 11234455555553 67778888887774
No 296
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*
Probab=35.92 E-value=48 Score=20.65 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=30.4
Q ss_pred hhhCCCEEEEEEECCChh---hHHH-------HHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 6 YYRGALGALLVYDVTKST---TFEN-------VSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~---s~~~-------~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
-++++|.+|+.-....+. ..+- ++...+.+.++..++..+++++|=+|.
T Consensus 105 ~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~ 163 (375)
T 7mdh_A 105 VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163 (375)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhH
Confidence 467899999987665421 2222 233444455553467888999997774
No 297
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=35.89 E-value=71 Score=19.17 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=26.7
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 116 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilY 154 (315)
T 3si9_A 116 AGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI--SIPIIIY 154 (315)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC--CCCEEEE
Confidence 37899888754434445567777777776653 6888875
No 298
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=35.79 E-value=69 Score=18.96 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=26.5
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilY 139 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT--SIPMIIY 139 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 36899888754434445567777777776653 6888875
No 299
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=35.75 E-value=58 Score=19.26 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=33.4
Q ss_pred hCCCEEEEEEECCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 8 RGALGALLVYDVTKS-TTFENVSRWLKDLRDHAG-SNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
.++|+++++--.-.+ .+-+.+..++..+-+..+ .+.|+++-=+-. .....++.+...+++
T Consensus 97 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~--~tg~~l~~~~~~~La 158 (294)
T 3b4u_A 97 AGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPS--VTMVTLSVELVGRLK 158 (294)
T ss_dssp TTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHH--HHSCCCCHHHHHHHH
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcc--hhCcCCCHHHHHHHH
Confidence 378888887544444 466677777777765541 168887753210 111234455555555
No 300
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=35.46 E-value=69 Score=18.88 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=27.1
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiilY 132 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS--TIPIIVY 132 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 37899888765545556677777777776653 5888774
No 301
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=35.22 E-value=74 Score=19.11 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=30.1
Q ss_pred hhhCCCEEEEEEECCChh---h---H----HHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 6 YYRGALGALLVYDVTKST---T---F----ENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~---s---~----~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
-++++|.+|+.-...... . | .-++...+.+.+.. ++..+++++|-.|.
T Consensus 66 ~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvd~ 123 (312)
T 3hhp_A 66 ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNT 123 (312)
T ss_dssp HHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHH
T ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEecCcchh
Confidence 478999999987655422 1 2 11244555555554 66678888887764
No 302
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=35.06 E-value=72 Score=18.95 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=27.0
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+. .+.|+++-
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a--~~lPiilY 144 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAES--TPLPVMLY 144 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHT--CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEE
Confidence 3789988876555555667777777777654 36888774
No 303
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=35.05 E-value=73 Score=19.06 Aligned_cols=53 Identities=9% Similarity=0.101 Sum_probs=33.2
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-=+..+ ++.+...+++
T Consensus 106 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~g~~------l~~~~~~~La 158 (316)
T 3e96_A 106 GADAVMIHMPIHPYVTAGGVYAYFRDIIEAL--DFPSLVYFKDPE------ISDRVLVDLA 158 (316)
T ss_dssp TCSEEEECCCCCSCCCHHHHHHHHHHHHHHH--TSCEEEEECCTT------SCTHHHHHHT
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCCCC------CCHHHHHHHH
Confidence 7899888744444456677777887876654 488887643333 4445555444
No 304
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=34.71 E-value=72 Score=18.83 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=27.0
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 132 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQEV--DIPIIIY 132 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 37899888765544556677777777776653 5887764
No 305
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=34.64 E-value=36 Score=20.49 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=28.4
Q ss_pred chhhCCCEEEEEEECCChh------hH----HHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 5 AYYRGALGALLVYDVTKST------TF----ENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~------s~----~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
.-+.+||.+++........ -| .-++...+.+.++. ++..+++++|-.|.
T Consensus 65 ~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~ 123 (314)
T 3nep_X 65 GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVANPLDV 123 (314)
T ss_dssp GGGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCSSHHH
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecCCchhH
Confidence 3477899999987655322 11 11234444555543 67778888887764
No 306
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=34.51 E-value=54 Score=17.36 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=25.1
Q ss_pred hhCCCEEEEEEECCChhhH-----HHHHHHH-HHHHHhcCCCCeEEEEee
Q 047889 7 YRGALGALLVYDVTKSTTF-----ENVSRWL-KDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~-----~~~~~~~-~~~~~~~~~~~~~vlvgn 50 (72)
+.+.|.+++.+.+-....+ ..+..|+ +.+....-...++.+.|+
T Consensus 43 l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~~~~l~gk~~avfg~ 92 (173)
T 2fcr_A 43 LKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGL 92 (173)
T ss_dssp GGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGGGCCCTTCEEEEEEE
T ss_pred HccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhccccccCCCEEEEEEE
Confidence 5567899998887542222 2344455 544332224566777776
No 307
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme, protein-DNA complex, hydrolase/DNA complex; HET: DNA; 1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A* 1es8_A
Probab=34.43 E-value=70 Score=18.64 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 23 TTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 23 ~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
..|+.+...+..+.......+|++|+|=.-|...
T Consensus 143 ~yyEq~l~~L~~~~~~~~~~vPI~vIGI~~~~~~ 176 (223)
T 1dfm_A 143 LYYEQAQNQLNSLAEYNVFDVPIRLVGLIEDFET 176 (223)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEEEECCTTC
T ss_pred hhHHHHHHHhhhhccCCCCCCCEEEEEecCcccc
Confidence 3466655555555433458899999998887643
No 308
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=34.30 E-value=72 Score=18.76 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=26.9
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiilY 132 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAESI--NLPIVLY 132 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 37899888765544556677777777776553 5887764
No 309
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=34.11 E-value=6.9 Score=19.99 Aligned_cols=19 Identities=37% Similarity=0.770 Sum_probs=14.7
Q ss_pred ECCChhhHHHHHHHHHHHH
Q 047889 18 DVTKSTTFENVSRWLKDLR 36 (72)
Q Consensus 18 d~~~~~s~~~~~~~~~~~~ 36 (72)
+.+++..+..+..|++.++
T Consensus 24 ~~~~~~~~~dV~~WLksLr 42 (101)
T 2es6_A 24 SLTDPKLLKNIPMWLKSLR 42 (101)
T ss_dssp TTSCHHHHTCHHHHHHTTT
T ss_pred ccCCcccccCHHHHHHHcc
Confidence 4567788889999987763
No 310
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=33.95 E-value=45 Score=20.04 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=30.5
Q ss_pred chhhCCCEEEEEEECCChh------hHH----HHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 5 AYYRGALGALLVYDVTKST------TFE----NVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~------s~~----~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
.-+.++|.+|+........ -|. -++...+.+.+.. ++.-+++++|-.|.
T Consensus 74 ~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsNPvd~ 132 (315)
T 3tl2_A 74 ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTNPVDA 132 (315)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCChHHH
Confidence 3467899999987554322 121 1245555566654 67778888887664
No 311
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=33.90 E-value=76 Score=18.89 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=33.5
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
.++|+++++--.-.+.+-+.+..++..+-+. .+.|+++-=+-. .....++.+...+++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a--~~lPiilYn~P~--~tg~~l~~~~~~~La 163 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISER--TDLGIVVYNVPG--RTGVNVLPETAARIA 163 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTT--CSSCEEEEECHH--HHSCCCCHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCcc--ccCcCCCHHHHHHHH
Confidence 3789988876544445667777777777554 368887743110 111234455555555
No 312
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=33.88 E-value=46 Score=16.35 Aligned_cols=41 Identities=7% Similarity=0.220 Sum_probs=25.9
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
..|.+++-+.+.+...++-++. +++.. +.+|++++....+.
T Consensus 49 ~~dlvi~d~~l~~~~g~~~~~~----l~~~~-~~~~ii~ls~~~~~ 89 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMDILRE----IKKIT-PHMAVIILTGHGDL 89 (143)
T ss_dssp TCCEEEEESCCSSSCHHHHHHH----HHHHC-TTCEEEEEECTTCH
T ss_pred CCCEEEEeCCCCCCcHHHHHHH----HHHhC-CCCeEEEEECCCCH
Confidence 4577777666666666654433 34433 67898888876653
No 313
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=33.49 E-value=76 Score=18.75 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=26.8
Q ss_pred hCCCEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKS-TTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+ .+-+.+..++..+-+.. +.|+++-
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiilY 129 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS--PHPVYLY 129 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEEE
Confidence 378998887655455 56677777777776553 5787764
No 314
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=33.21 E-value=78 Score=18.82 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=26.9
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilY 148 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT--EVPICLY 148 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 37899888765544556677777777776653 5888774
No 315
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=32.82 E-value=48 Score=20.10 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=30.5
Q ss_pred hhCCCEEEEEEECCCh------hhH----HHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 7 YRGALGALLVYDVTKS------TTF----ENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~------~s~----~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
++++|.+++.-..... +-| .-++...+.+.+.....+.+++++|-.|.
T Consensus 77 ~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~ 134 (333)
T 5mdh_A 77 FKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT 134 (333)
T ss_dssp TTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHH
Confidence 5789999987654421 212 22356666677766444568888987764
No 316
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=32.74 E-value=28 Score=17.74 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=17.4
Q ss_pred cccchhhCCCEEEEEEECC--ChhhH
Q 047889 2 ITSAYYRGALGALLVYDVT--KSTTF 25 (72)
Q Consensus 2 l~~~y~~~a~~~i~v~d~~--~~~s~ 25 (72)
|++.....||++|+.-|+. +.+.|
T Consensus 50 Lt~~~I~~AD~VIia~d~~v~~~~RF 75 (106)
T 2m1z_A 50 LTEKDVNIGEVVIFAVDTKVRNKERF 75 (106)
T ss_dssp CCHHHHHHCSEEEEEESSCCSTHHHH
T ss_pred CCHHHHhhCCEEEEeccccccchhcc
Confidence 4456778899999999875 34444
No 317
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=32.74 E-value=76 Score=18.68 Aligned_cols=38 Identities=5% Similarity=0.047 Sum_probs=25.4
Q ss_pred CCCEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 9 GALGALLVYDVTKS-TTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 9 ~a~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
++|+++++--.-.+ .+-+.+..++..+-+.. +.|+++-
T Consensus 91 Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiilY 129 (288)
T 2nuw_A 91 DILGVSSHSPYYFPRLPEKFLAKYYEEIARIS--SHSLYIY 129 (288)
T ss_dssp CCSEEEECCCCSSCSCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred CCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 68888887544444 46667777777776553 5787764
No 318
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=32.67 E-value=76 Score=18.64 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=26.0
Q ss_pred hCCCEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKS-TTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+ .+-+.+..++..+-+.. +.|+++-
T Consensus 89 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiilY 128 (286)
T 2r91_A 89 RGAEAVASLPPYYFPRLSERQIAKYFRDLCSAV--SIPVFLY 128 (286)
T ss_dssp TTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 378888887554444 46677777777776553 5787764
No 319
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=32.58 E-value=78 Score=18.64 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=26.0
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
++|+++++--.-.+.+-+.+..++..+-+. .+.|+++-
T Consensus 96 Gadavlv~~P~y~~~s~~~l~~~f~~ia~a--~~lPiilY 133 (292)
T 2ojp_A 96 GIVGCLTVTPYYNRPSQEGLYQHFKAIAEH--TDLPQILY 133 (292)
T ss_dssp SCSEEEEECCCSSCCCHHHHHHHHHHHHTT--CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEE
Confidence 789988876554455667777777777554 35888764
No 320
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=32.54 E-value=60 Score=17.26 Aligned_cols=44 Identities=11% Similarity=-0.030 Sum_probs=22.3
Q ss_pred hhCCCEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 7 YRGALGALLVYDVTKSTTF-ENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
+.+.|.+++.+.+-....+ ..+..+++.+....-.+.++.++|+
T Consensus 43 l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~l~gk~vavfg~ 87 (175)
T 1ag9_A 43 LEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGC 87 (175)
T ss_dssp HHTCSEEEEECCEETTTEECHHHHHHHHHHTTCCCTTCEEEEEEE
T ss_pred hhhCCEEEEEEeecCCCcChHHHHHHHhhhhhcccCCCEEEEEEE
Confidence 4567888887665221111 1234444444432224567777766
No 321
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=32.47 E-value=48 Score=16.12 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=22.3
Q ss_pred CCEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVT-KSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|.+++-+++. +.+.++-++. +++. +.+|++++....+
T Consensus 55 ~dlii~d~~~~~~~~g~~~~~~----l~~~--~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 55 PDIALVDIMLCGALDGVETAAR----LAAG--CNLPIIFITSSQD 93 (140)
T ss_dssp CSEEEEESSCCSSSCHHHHHHH----HHHH--SCCCEEEEECCCC
T ss_pred CCEEEEecCCCCCCCHHHHHHH----HHhC--CCCCEEEEecCCC
Confidence 46666665554 4455544333 3333 5688888877665
No 322
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=32.41 E-value=87 Score=19.08 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=26.7
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+. .++|+++-
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a--~~lPiilY 163 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADS--VTLPVMLY 163 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHT--CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEE
Confidence 3789988876554455667777777777654 36888764
No 323
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=32.36 E-value=74 Score=19.27 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=26.0
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
++|+++++--.-.+.+-+.+..++..+-+.. ++|+++-
T Consensus 129 Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~--~lPiilY 166 (332)
T 2r8w_A 129 GADALLLAPVSYTPLTQEEAYHHFAAVAGAT--ALPLAIY 166 (332)
T ss_dssp TCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 7888888755444456677777777776553 5888764
No 324
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=32.21 E-value=69 Score=17.89 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=20.5
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
+++||+|+.-... ...++.+. ..++|+|+++...+-
T Consensus 62 ~~vdgiIi~~~~~--------~~~~~~l~---~~~iPvV~i~~~~~~ 97 (276)
T 3jy6_A 62 RGFDGLILQSFSN--------PQTVQEIL---HQQMPVVSVDREMDA 97 (276)
T ss_dssp TTCSEEEEESSCC--------HHHHHHHH---TTSSCEEEESCCCTT
T ss_pred CCCCEEEEecCCc--------HHHHHHHH---HCCCCEEEEecccCC
Confidence 4678877654322 12223333 357999999876653
No 325
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=31.92 E-value=75 Score=18.36 Aligned_cols=41 Identities=12% Similarity=-0.047 Sum_probs=24.8
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKS 52 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~ 52 (72)
+++++.+ +.....+...++...+.+++.. .++|+++-|.-.
T Consensus 174 ~~d~V~l--S~l~~~~~~~~~~~i~~l~~~~-~~~~v~vGG~~~ 214 (258)
T 2i2x_B 174 KPIMLTG--TALMTTTMYAFKEVNDMLLENG-IKIPFACGGGAV 214 (258)
T ss_dssp CCSEEEE--ECCCTTTTTHHHHHHHHHHTTT-CCCCEEEESTTC
T ss_pred CCCEEEE--EeeccCCHHHHHHHHHHHHhcC-CCCcEEEECccC
Confidence 4454444 4444456667788888887754 457766666433
No 326
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=31.89 E-value=79 Score=18.73 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=26.4
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 132 (297)
T 2rfg_A 94 AGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI--DIPIIVY 132 (297)
T ss_dssp HTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 37888888755444456677777777776553 5887764
No 327
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=31.88 E-value=51 Score=16.26 Aligned_cols=41 Identities=7% Similarity=0.186 Sum_probs=24.5
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDH-AGSNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~vlvgnK~D 53 (72)
..|.+++-+++.+...++- ...+++. ..+.+|++++....+
T Consensus 52 ~~dlii~d~~l~~~~g~~~----~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 52 HPHLIITEANMPKISGMDL----FNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp CCSEEEEESCCSSSCHHHH----HHHHHTSTTTTTSCEEEEESSCC
T ss_pred CCCEEEEcCCCCCCCHHHH----HHHHHcCcccCCCCEEEEeCCCC
Confidence 3566666666665555543 3344442 236789988887665
No 328
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=31.83 E-value=81 Score=18.59 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=26.7
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilY 136 (293)
T 1f6k_A 98 LGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET--GSNMIVY 136 (293)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CCCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 37899888765555556677777777776654 4787764
No 329
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=31.75 E-value=1.2e+02 Score=20.54 Aligned_cols=43 Identities=16% Similarity=0.429 Sum_probs=24.4
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|++|+=+++.+.+.-.+-..+++.+++.. .++|++++..+.+
T Consensus 54 ~d~vilDi~lp~~~~~~~G~~ll~~iR~~~-~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 54 IDCLMFSYQMEHPDEHQNVRQLIGKLHERQ-QNVPVFLLGDREK 96 (755)
T ss_dssp CSEEEEECCCCSHHHHHHHHHHHHHHHHHS-TTCCEEEEECHHH
T ss_pred CcEEEEeCCCCcccccccHHHHHHHHHHhC-CCCCEEEEecCCc
Confidence 466666555544111111124556666653 6799999988744
No 330
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=31.68 E-value=85 Score=18.78 Aligned_cols=54 Identities=9% Similarity=-0.014 Sum_probs=33.7
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-= .... ++.+...+++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn-----~tg~-l~~~~~~~La 158 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEAL--DAPSIIYF-----KDAH-LSDDVIKELA 158 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS--SSCEEEEE-----CCTT-SCTHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEe-----CCCC-cCHHHHHHHH
Confidence 37888888754444445567777777776653 48877653 2334 5666666655
No 331
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=31.20 E-value=54 Score=16.35 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=24.0
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
..|.+++-+.+.+...++-++ .+++.. +.+|++++....+
T Consensus 61 ~~dlii~d~~l~~~~g~~~~~----~l~~~~-~~~~ii~~s~~~~ 100 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVAA----AVRSYE-LPTRVLLISAHDE 100 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHHH----HHHHTT-CSCEEEEEESCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHH----HHHhcC-CCCeEEEEEccCC
Confidence 356666666665555555433 344433 6788888877665
No 332
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=30.87 E-value=85 Score=18.51 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=27.5
Q ss_pred hhhCCCEEEEEEECCCh----------hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 6 YYRGALGALLVYDVTKS----------TTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
-+.++|.+++....... ....-++...+.+.+.. ++..++++.|-.|.
T Consensus 64 a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~ 121 (304)
T 2v6b_A 64 ELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDL 121 (304)
T ss_dssp GGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHH
T ss_pred HhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHH
Confidence 36788988887644332 23333455666666664 66666667776664
No 333
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=30.69 E-value=81 Score=18.19 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=20.2
Q ss_pred CCCeEEEEeeCCCCcccccCCHHHHHHHH
Q 047889 41 SNIVIMLIGNKSDLKHLLNSMCEEYLIKS 69 (72)
Q Consensus 41 ~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a 69 (72)
.++|+++.|-..|-..+.--.......+|
T Consensus 127 ~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~A 155 (219)
T 3e2i_A 127 DGHRVIVAGLDMDFRGEPFEPMPKLMAVS 155 (219)
T ss_dssp TTCEEEEEEESBCTTSCBCTTHHHHHHHC
T ss_pred CCCEEEEeecccccccCCCccHHHHHHhc
Confidence 57999999999998765444444555444
No 334
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=30.59 E-value=24 Score=21.24 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=9.8
Q ss_pred CCCeEEEEeeCC
Q 047889 41 SNIVIMLIGNKS 52 (72)
Q Consensus 41 ~~~~~vlvgnK~ 52 (72)
.++|+|.|||=.
T Consensus 34 ~~vPVI~VGNit 45 (315)
T 4ehx_A 34 LPVPVISVGNLS 45 (315)
T ss_dssp CSSCEEEEEESB
T ss_pred CCCCEEEECCEE
Confidence 579999999943
No 335
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=30.44 E-value=50 Score=17.08 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=23.5
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCeEEEE-eeCCCCc
Q 047889 20 TKSTTFENVSRWLKDLRDHAGSNIVIMLI-GNKSDLK 55 (72)
Q Consensus 20 ~~~~s~~~~~~~~~~~~~~~~~~~~~vlv-gnK~Dl~ 55 (72)
-...+|+.-..-...+++.-+..+|+|+- ..+.|++
T Consensus 8 K~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P 44 (118)
T 3rui_B 8 KSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIP 44 (118)
T ss_dssp TTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSC
T ss_pred hccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCC
Confidence 34567777666666777766778897773 3455553
No 336
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=30.33 E-value=85 Score=18.83 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=26.7
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEe
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIG 49 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvg 49 (72)
.++|+++++--.-.+.+-+.+..++..+-+.. +.|+++-=
T Consensus 118 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn 157 (315)
T 3na8_A 118 LGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI--GVPVMLYN 157 (315)
T ss_dssp TTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCcEEEEe
Confidence 36888888754434445567777777776654 58888753
No 337
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=29.97 E-value=57 Score=16.27 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=23.8
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 11 LGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 11 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
|.+++-+++.+...++-++. +++.. +.+|++++....|
T Consensus 50 dlvi~D~~l~~~~g~~~~~~----l~~~~-~~~~ii~~s~~~~ 87 (151)
T 3kcn_A 50 SVIMVDMRMPGMEGTEVIQK----ARLIS-PNSVYLMLTGNQD 87 (151)
T ss_dssp SEEEEESCCSSSCHHHHHHH----HHHHC-SSCEEEEEECGGG
T ss_pred CEEEEeCCCCCCcHHHHHHH----HHhcC-CCcEEEEEECCCC
Confidence 77777666666666654443 34333 6788888876554
No 338
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=29.91 E-value=52 Score=15.80 Aligned_cols=40 Identities=8% Similarity=0.222 Sum_probs=20.0
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
.|.+++-+++.+...++-++ .+++. .+.+|++++....+.
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~----~l~~~-~~~~~ii~~t~~~~~ 91 (130)
T 3eod_A 52 PDLMICDIAMPRMNGLKLLE----HIRNR-GDQTPVLVISATENM 91 (130)
T ss_dssp CSEEEECCC-----CHHHHH----HHHHT-TCCCCEEEEECCCCH
T ss_pred CCEEEEecCCCCCCHHHHHH----HHHhc-CCCCCEEEEEcCCCH
Confidence 45555555555544554433 34443 367888888776653
No 339
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=29.75 E-value=54 Score=15.92 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=23.6
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
..|.+++-+++.+...++-++ .+++.. +.+|++++....+
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~----~l~~~~-~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 51 APDVIITDIRMPKLGGLEMLD----RIKAGG-AKPYVIVISAFSE 90 (137)
T ss_dssp CCSEEEECSSCSSSCHHHHHH----HHHHTT-CCCEEEECCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHH----HHHhcC-CCCcEEEEecCcC
Confidence 346666655555555555433 344433 6788888776665
No 340
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=29.71 E-value=73 Score=17.41 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=32.9
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
....+|.++++... +..++..+....+.+.+. ...++-+|.|+.+-..
T Consensus 130 ~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~--~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 130 AMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA--GLAILGFVLNRYGRSD 177 (237)
T ss_dssp HHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT--TCEEEEEEEEEETSCT
T ss_pred HHHHCCeEEEEecC-CcccHHHHHHHHHHHHhC--CCceEEEEEecCCccc
Confidence 34568888888764 567777777777777654 2244667889988543
No 341
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=29.63 E-value=58 Score=16.72 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEEe-eCCCC
Q 047889 23 TTFENVSRWLKDLRDHAGSNIVIMLIG-NKSDL 54 (72)
Q Consensus 23 ~s~~~~~~~~~~~~~~~~~~~~~vlvg-nK~Dl 54 (72)
.+|+.-..-...++..-+..+|+++-- .+.|+
T Consensus 9 ~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~ 41 (117)
T 1eo6_A 9 HSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQI 41 (117)
T ss_dssp SCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSS
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCC
Confidence 466666666666777666789988753 34444
No 342
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=29.49 E-value=85 Score=19.89 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCeEEEEee
Q 047889 19 VTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGN 50 (72)
Q Consensus 19 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgn 50 (72)
++....+.++..++..++... ..+.|.|++|.
T Consensus 103 Lt~eQALaD~a~fi~~~k~~~~~~~~pwI~~GG 135 (472)
T 4ebb_A 103 LTVEQALADFAELLRALRRDLGAQDAPAIAFGG 135 (472)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEcc
Confidence 344567777777777776544 36789999885
No 343
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=29.41 E-value=53 Score=18.15 Aligned_cols=10 Identities=10% Similarity=0.066 Sum_probs=5.9
Q ss_pred hhCCCEEEEE
Q 047889 7 YRGALGALLV 16 (72)
Q Consensus 7 ~~~a~~~i~v 16 (72)
...||++|++
T Consensus 65 i~~aD~~ii~ 74 (190)
T 3u7r_A 65 IEHSDAVLAI 74 (190)
T ss_dssp HHTSSEEEEE
T ss_pred HHhCCcEEEe
Confidence 4456666665
No 344
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=29.16 E-value=67 Score=16.75 Aligned_cols=44 Identities=7% Similarity=0.037 Sum_probs=20.3
Q ss_pred hhCCCEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 7 YRGALGALLVYDVTKSTTF-ENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
+...|.+++.+.+-..... ..+..+++.+....-...++.++|+
T Consensus 44 l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~l~~k~~~~f~t 88 (169)
T 1obo_A 44 LNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNGKLVAYFGT 88 (169)
T ss_dssp GGGCSEEEEEEEEETTTEECHHHHHHHTTGGGCCCTTCEEEEEEE
T ss_pred HhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcCcCCCEEEEEEE
Confidence 4456777777665321111 1223344333322224456666666
No 345
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=29.14 E-value=61 Score=17.29 Aligned_cols=30 Identities=0% Similarity=-0.025 Sum_probs=19.9
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHH
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLR 36 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~ 36 (72)
+..+|++|+++-+=.-.-=..++.|++.+.
T Consensus 84 l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 113 (201)
T 1t5b_A 84 LKAHDVIVIAAPMYNFNIPTQLKNYFDLIA 113 (201)
T ss_dssp HHHCSEEEEECCCBTTBCCHHHHHHHHHHC
T ss_pred HHhCCEEEEEeCcccCcCCHHHHHHHHHhe
Confidence 557999999876554332234567877775
No 346
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=29.02 E-value=62 Score=16.35 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=23.7
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
.|.+++-+++.+...++-++ .+++.. +.+|++++....+.
T Consensus 84 ~dliilD~~l~~~~g~~~~~----~lr~~~-~~~~ii~ls~~~~~ 123 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLS----NIMEFD-KNARVIMISALGKE 123 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHH----HHHHHC-TTCCEEEEESCCCH
T ss_pred CCEEEEeccCCCccHHHHHH----HHHhhC-CCCcEEEEeccCcH
Confidence 46666666666655555433 344433 67888888776553
No 347
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=29.01 E-value=95 Score=18.47 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=26.5
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
..+.+++.+ +.+-..+..++..+.....+...++++|.|.+
T Consensus 76 ~~~~~~~~~----pk~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~ 116 (343)
T 2pjd_A 76 DCDTLIYYW----PKNKPEAQFQLMNLLSLLPVGTDIFVVGENRS 116 (343)
T ss_dssp TCSEEEEEC----CSSHHHHHHHHHHHHTTSCTTCEEEEEEEGGG
T ss_pred CCCEEEEEC----CCChHHHHHHHHHHHHhCCCCCEEEEEEecCC
Confidence 345555554 23344556677777776667788899998765
No 348
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=28.89 E-value=47 Score=19.18 Aligned_cols=14 Identities=14% Similarity=-0.028 Sum_probs=6.7
Q ss_pred hCCCEEEEEEECCC
Q 047889 8 RGALGALLVYDVTK 21 (72)
Q Consensus 8 ~~a~~~i~v~d~~~ 21 (72)
..||++|++.-+=+
T Consensus 97 ~~AD~iI~~sP~Yn 110 (247)
T 2q62_A 97 IWSEGQVWVSPERH 110 (247)
T ss_dssp HHCSEEEEEEECSS
T ss_pred HHCCEEEEEeCCCC
Confidence 34555555544333
No 349
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=28.85 E-value=61 Score=16.21 Aligned_cols=40 Identities=8% Similarity=0.049 Sum_probs=24.4
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
..|.+++-+++.+...++-+.. +++. .+.+|++++....+
T Consensus 58 ~~dlvi~D~~l~~~~g~~~~~~----l~~~-~~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 58 EVDLVISAAHLPQMDGPTLLAR----IHQQ-YPSTTRILLTGDPD 97 (153)
T ss_dssp CCSEEEEESCCSSSCHHHHHHH----HHHH-CTTSEEEEECCCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHH----HHhH-CCCCeEEEEECCCC
Confidence 3566666666666666655443 3333 26788888876554
No 350
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=28.75 E-value=59 Score=16.03 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=25.1
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
..|.+++-+.+.+...++-++. +++.. +.+|++++....+
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~----l~~~~-~~~~ii~lt~~~~ 106 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEK----LSRLH-PGLTCLLVTTDAS 106 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHH----HHHHC-TTCEEEEEESCCC
T ss_pred CCCEEEEeCCCCCccHHHHHHH----HHHhC-CCCcEEEEeCCCC
Confidence 4577777666666666654443 34433 6789888877655
No 351
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=28.66 E-value=96 Score=18.42 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=29.5
Q ss_pred hhhCCCEEEEEEECCCh------h-hHHH---HHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 6 YYRGALGALLVYDVTKS------T-TFEN---VSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~------~-s~~~---~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
-+.+||.+++....... + -+.+ ++...+.+.+.. ++..++++.|=+|.
T Consensus 64 a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~ 121 (308)
T 2d4a_B 64 DMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPVDA 121 (308)
T ss_dssp GGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHH
Confidence 37789998888555432 1 1222 345666666665 66677778886653
No 352
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=28.63 E-value=73 Score=18.07 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=20.9
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
+++||+|++-...+.. .++.+.+ .++|+|+++...+-
T Consensus 67 ~~vdGiI~~~~~~~~~-------~~~~l~~---~~iPvV~i~~~~~~ 103 (295)
T 3hcw_A 67 RMVDAFILLYSKENDP-------IKQMLID---ESMPFIVIGKPTSD 103 (295)
T ss_dssp TCCSEEEESCCCTTCH-------HHHHHHH---TTCCEEEESCCCSS
T ss_pred CCcCEEEEcCcccChH-------HHHHHHh---CCCCEEEECCCCcc
Confidence 5688888763221111 2222332 46899999886653
No 353
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=28.41 E-value=62 Score=16.18 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=8.5
Q ss_pred EEEEEEECCCh
Q 047889 12 GALLVYDVTKS 22 (72)
Q Consensus 12 ~~i~v~d~~~~ 22 (72)
-++++||+++.
T Consensus 6 ~vlv~YDI~~~ 16 (100)
T 4es1_A 6 LVLITYDVQTS 16 (100)
T ss_dssp EEEEEEECCTT
T ss_pred EEEEEEECCCC
Confidence 47889999864
No 354
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.40 E-value=16 Score=19.16 Aligned_cols=18 Identities=39% Similarity=0.804 Sum_probs=13.9
Q ss_pred CCChhhHHHHHHHHHHHH
Q 047889 19 VTKSTTFENVSRWLKDLR 36 (72)
Q Consensus 19 ~~~~~s~~~~~~~~~~~~ 36 (72)
.+++..+..+..|+..++
T Consensus 43 ~~d~~~~~dV~~WL~sLr 60 (119)
T 2b6g_A 43 LTDPKLLKNIPMWLKSLR 60 (119)
T ss_dssp HSCHHHHHCHHHHHHHHT
T ss_pred ccCcccccCHHHHHHHCC
Confidence 356778899999998864
No 355
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=28.26 E-value=62 Score=16.13 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=21.9
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|.+++-+++.+...++-+ ..+++.. +.+|++++....+
T Consensus 52 ~dlii~D~~l~~~~g~~~~----~~l~~~~-~~~~ii~ls~~~~ 90 (153)
T 3cz5_A 52 PDIVVMDLTLPGPGGIEAT----RHIRQWD-GAARILIFTMHQG 90 (153)
T ss_dssp CSEEEECSCCSSSCHHHHH----HHHHHHC-TTCCEEEEESCCS
T ss_pred CCEEEEecCCCCCCHHHHH----HHHHHhC-CCCeEEEEECCCC
Confidence 4555555555554554433 3344433 5788888876654
No 356
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=28.14 E-value=96 Score=18.28 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=30.0
Q ss_pred hhCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 7 YRGALGALLVYDVTK----------STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
+.++|.+++...+.. ++...-.+...+.+.... ++..++++.|=.|+
T Consensus 70 ~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~ 126 (317)
T 2ewd_A 70 ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDV 126 (317)
T ss_dssp GTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHH
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHH
Confidence 567888888764332 233444566777777775 56777777776554
No 357
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=28.11 E-value=63 Score=16.13 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=22.7
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|.+++-+++.+...++-++ .+++.. +.+|++++....+
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~----~l~~~~-~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 52 VQLVISDMRMPEMGGEVFLE----QVAKSY-PDIERVVISGYAD 90 (154)
T ss_dssp CSEEEEESSCSSSCHHHHHH----HHHHHC-TTSEEEEEECGGG
T ss_pred CCEEEEecCCCCCCHHHHHH----HHHHhC-CCCcEEEEecCCC
Confidence 46666655555555554433 334333 5789888876654
No 358
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=27.91 E-value=66 Score=16.28 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 23 TTFENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 23 ~s~~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
.+|+.-..-...++...+..+|+++--.
T Consensus 8 ~~~e~R~~e~~~ir~k~p~~IPVive~~ 35 (110)
T 2r2q_A 8 HPFEYRKKEGEKIRKKYPDRVPVIVEKA 35 (110)
T ss_dssp SCHHHHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEEec
Confidence 4566665566667766667888877543
No 359
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=27.84 E-value=53 Score=19.30 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=24.2
Q ss_pred hCCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 8 RGALGALLVYDVTKST-TFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
.++|+++++--.-.+. +-+.+..++..+-+ +.|+++-
T Consensus 87 ~Gadavlv~~P~y~~~~~~~~l~~~f~~va~----~lPiilY 124 (283)
T 2pcq_A 87 AGAMALLATPPRYYHGSLGAGLLRYYEALAE----KMPLFLY 124 (283)
T ss_dssp HTCSEEEECCCCTTGGGTTTHHHHHHHHHHH----HSCEEEE
T ss_pred cCCCEEEecCCcCCCCCCHHHHHHHHHHHhc----CCCEEEE
Confidence 3788888875544444 55666666666655 5787764
No 360
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=27.75 E-value=65 Score=17.01 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEE-eeCCC
Q 047889 23 TTFENVSRWLKDLRDHAGSNIVIMLI-GNKSD 53 (72)
Q Consensus 23 ~s~~~~~~~~~~~~~~~~~~~~~vlv-gnK~D 53 (72)
.+|+.-..-...+++.-+..+|+++- ..+.+
T Consensus 16 ~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~ 47 (130)
T 2zjd_A 16 RTFEQRVEDVRLIREQHPTKIPVIIERYKGEK 47 (130)
T ss_dssp SCHHHHHHHHHHHHHHCTTEEEEEEEECTTCC
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEEEcCCCC
Confidence 45666655666677766778998873 44555
No 361
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=27.69 E-value=1.1e+02 Score=18.64 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=32.2
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
.|.+.||+++.- .-++++....++..+.. ..+.|+|+.|--.-...
T Consensus 70 ~~~~~dG~VItH---GTDTmeeTA~~Ls~ll~--~~~kPVVlTGAqrP~~~ 115 (328)
T 1wls_A 70 EVWEYDGIVITH---GTDTMAYSASMLSFMLR--NPPIPIVLTGSMLPITE 115 (328)
T ss_dssp HTTTCSEEEEEC---CGGGHHHHHHHHHHHEE--SCSSEEEEECCSSCTTS
T ss_pred HhccCCeEEEEc---CCchHHHHHHHHHHHHh--CCCCCEEEECCCCCCCC
Confidence 345789988874 46788887777765432 35789999998776543
No 362
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=27.60 E-value=55 Score=17.00 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=23.5
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCc
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLK 55 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~ 55 (72)
.+..+++-=|.+.+.....++. +-.. .++|++.+++|.+|.
T Consensus 40 ka~LViiA~D~~p~~~~~~i~~----lc~~--~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 40 QALFVCVAEDCDQGNYVKLVKA----LCAK--NEIKYVSVPKRASLG 80 (126)
T ss_dssp CCSEEEEESSCCSTTHHHHHHH----HHHH--TTCCEEEESCSHHHH
T ss_pred CceEEEEeCCCChHHHHHHHHH----HHHH--hCCCEEEECCHHHHH
Confidence 3455555556554444333333 2222 469999998887763
No 363
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=27.51 E-value=1e+02 Score=18.45 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=23.3
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
..+|++++...+-...-...+..+++.+....-.+.++.++|+
T Consensus 302 ~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~~~l~~k~~~~f~t 344 (402)
T 1e5d_A 302 SDAGAVIVGSPTHNNGILPYVAGTLQYIKGLRPQNKIGGAFGS 344 (402)
T ss_dssp HTCSEEEEECCCBTTBCCHHHHHHHHHHHHTCCCSCEEEEEEE
T ss_pred HHCCEEEEECCccCCCchHHHHHHHHHhhhcccCCCEEEEEEc
Confidence 5677777776544433223455555555432224566666665
No 364
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=27.50 E-value=64 Score=16.05 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=22.8
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|.+++-+++.+...++-++ .+++. .+.+|++++....+
T Consensus 67 ~dlii~D~~l~~~~g~~~~~----~l~~~-~~~~~ii~ls~~~~ 105 (150)
T 4e7p_A 67 VDIAILDVEMPVKTGLEVLE----WIRSE-KLETKVVVVTTFKR 105 (150)
T ss_dssp CSEEEECSSCSSSCHHHHHH----HHHHT-TCSCEEEEEESCCC
T ss_pred CCEEEEeCCCCCCcHHHHHH----HHHHh-CCCCeEEEEeCCCC
Confidence 45555555555555555433 34443 36789888877665
No 365
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=27.48 E-value=58 Score=18.15 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=21.9
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVI-MLIGNK 51 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vlvgnK 51 (72)
++|.+++.-|+.+...-.....+.+.+... .+|+ ++.||-
T Consensus 41 ~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l---~~p~~~v~GNH 81 (274)
T 3d03_A 41 RPDAVVVSGDIVNCGRPEEYQVARQILGSL---NYPLYLIPGNH 81 (274)
T ss_dssp CCSEEEEESCCBSSCCHHHHHHHHHHHTTC---SSCEEEECCTT
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHhc---CCCEEEECCCC
Confidence 569999999988754433322333333322 4565 445663
No 366
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=27.07 E-value=1.1e+02 Score=18.73 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=23.9
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 19 VTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 19 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
+....+...+...+.++.....++.+++++|.|.+.
T Consensus 109 ~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g 144 (381)
T 3dmg_A 109 LPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKG 144 (381)
T ss_dssp CCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGT
T ss_pred CCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHHH
Confidence 333344555566666666665577889999988764
No 367
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=27.04 E-value=62 Score=15.72 Aligned_cols=40 Identities=5% Similarity=-0.022 Sum_probs=25.8
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
..|.+++-+.+.+.+.++-++ .+++.. +.+|++++....+
T Consensus 59 ~~dlvi~D~~l~~~~g~~~~~----~l~~~~-~~~~ii~~s~~~~ 98 (135)
T 3snk_A 59 RPGIVILDLGGGDLLGKPGIV----EARALW-ATVPLIAVSDELT 98 (135)
T ss_dssp CCSEEEEEEETTGGGGSTTHH----HHHGGG-TTCCEEEEESCCC
T ss_pred CCCEEEEeCCCCCchHHHHHH----HHHhhC-CCCcEEEEeCCCC
Confidence 357777777777766655433 344444 4788888876655
No 368
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=27.04 E-value=61 Score=15.61 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=21.8
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
.|.+++-+++.+...++-++ .+++.. +.+|++++....+.
T Consensus 47 ~dlii~d~~l~~~~g~~~~~----~l~~~~-~~~~ii~~s~~~~~ 86 (134)
T 3f6c_A 47 PDIVIIDVDIPGVNGIQVLE----TLRKRQ-YSGIIIIVSAKNDH 86 (134)
T ss_dssp CSEEEEETTCSSSCHHHHHH----HHHHTT-CCSEEEEEECC---
T ss_pred CCEEEEecCCCCCChHHHHH----HHHhcC-CCCeEEEEeCCCCh
Confidence 46566555555555555433 344433 67888888776653
No 369
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=26.68 E-value=70 Score=17.37 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=17.5
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHH
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLR 36 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~ 36 (72)
+..+|++|+.+-+=.-.--..++.|++.+.
T Consensus 76 l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~ 105 (211)
T 1ydg_A 76 LEWAEAIVFSSPTRFGGATSQMRAFIDTLG 105 (211)
T ss_dssp HHHCSEEEEEEEEETTEECHHHHHHHHTTH
T ss_pred HHHCCEEEEEcCccccCccHHHHHHHHHhc
Confidence 457899999765544322233555666543
No 370
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=26.58 E-value=63 Score=15.67 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=22.0
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|.+++-+.+.+...++-++ .+++. .+.+|++++....+
T Consensus 50 ~dlvilD~~lp~~~g~~~~~----~l~~~-~~~~~ii~ls~~~~ 88 (133)
T 3b2n_A 50 PNVVILDIEMPGMTGLEVLA----EIRKK-HLNIKVIIVTTFKR 88 (133)
T ss_dssp CSEEEECSSCSSSCHHHHHH----HHHHT-TCSCEEEEEESCCC
T ss_pred CCEEEEecCCCCCCHHHHHH----HHHHH-CCCCcEEEEecCCC
Confidence 46555555554545554333 33433 35789888877655
No 371
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=26.47 E-value=49 Score=18.65 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=20.1
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
+++||+|+.-. +..... ..++.+.+ .++|+|++++..+
T Consensus 68 ~~vdgiii~~~--~~~~~~---~~~~~~~~---~~iPvV~~~~~~~ 105 (304)
T 3gbv_A 68 EQPDGVMFAPT--VPQYTK---GFTDALNE---LGIPYIYIDSQIK 105 (304)
T ss_dssp TCCSEEEECCS--SGGGTH---HHHHHHHH---HTCCEEEESSCCT
T ss_pred cCCCEEEECCC--ChHHHH---HHHHHHHH---CCCeEEEEeCCCC
Confidence 46788766522 222211 22333333 3589999987654
No 372
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=26.22 E-value=1e+02 Score=18.48 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=28.8
Q ss_pred hhhCCCEEEEEEECCChhh-----H-----HHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 6 YYRGALGALLVYDVTKSTT-----F-----ENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s-----~-----~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
-+++||.+++......... + .-++...+.+.++. ++.-++++.|=.|.
T Consensus 73 a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~ 130 (326)
T 2zqz_A 73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDI 130 (326)
T ss_dssp GGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHH
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCcHHH
Confidence 3678999998876654321 1 22344555566664 66777777887764
No 373
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=26.03 E-value=94 Score=17.48 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=20.5
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
+++||+|++- ..... ..++.+.+ ..+|+|+++...+
T Consensus 65 ~~vdgiIi~~-~~~~~------~~~~~l~~---~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 65 GSADGVIISK-IEPND------PRVRFMTE---RNMPFVTHGRSDM 100 (288)
T ss_dssp TCCSEEEEES-CCTTC------HHHHHHHH---TTCCEEEESCCCS
T ss_pred CCccEEEEec-CCCCc------HHHHHHhh---CCCCEEEECCcCC
Confidence 5789988763 22111 12223333 4699999887654
No 374
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=25.87 E-value=55 Score=18.38 Aligned_cols=39 Identities=5% Similarity=0.066 Sum_probs=21.1
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
+++||+|+.- . +...+. ..++.+.+ .++|+|+++...+-
T Consensus 63 ~~vdgiI~~~-~-~~~~~~---~~~~~~~~---~~iPvV~~~~~~~~ 101 (293)
T 3l6u_A 63 LKVDAIFITT-L-DDVYIG---SAIEEAKK---AGIPVFAIDRMIRS 101 (293)
T ss_dssp TTCSEEEEEC-S-CTTTTH---HHHHHHHH---TTCCEEEESSCCCC
T ss_pred cCCCEEEEec-C-ChHHHH---HHHHHHHH---cCCCEEEecCCCCC
Confidence 4678877653 2 222211 12233333 46999999876653
No 375
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=25.70 E-value=75 Score=16.46 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEE-eeCCCC
Q 047889 23 TTFENVSRWLKDLRDHAGSNIVIMLI-GNKSDL 54 (72)
Q Consensus 23 ~s~~~~~~~~~~~~~~~~~~~~~vlv-gnK~Dl 54 (72)
.+|+.-..-...+++.-+..+|+|+- ..+.|+
T Consensus 12 ~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~ 44 (119)
T 3h9d_A 12 HTFESRQSDAAKVRERHPDRLPIICEKVYNSDI 44 (119)
T ss_dssp SCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSC
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCC
Confidence 45665555556666666678897774 334554
No 376
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=25.69 E-value=75 Score=16.67 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCeEEEEe-eCCCC
Q 047889 22 STTFENVSRWLKDLRDHAGSNIVIMLIG-NKSDL 54 (72)
Q Consensus 22 ~~s~~~~~~~~~~~~~~~~~~~~~vlvg-nK~Dl 54 (72)
..+|+.-..-...+++.-+..+|+|+-- .+.++
T Consensus 16 ~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~l 49 (125)
T 3m95_A 16 EHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARL 49 (125)
T ss_dssp HSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSS
T ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCC
Confidence 3466666556666776666788987743 34444
No 377
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=25.58 E-value=82 Score=16.59 Aligned_cols=42 Identities=5% Similarity=0.063 Sum_probs=26.1
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNK 51 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK 51 (72)
..+|++|+...+-. ..+. ...++..+......+.++.++|+-
T Consensus 55 ~~~d~ii~Gspty~-g~~p-~~~~l~~l~~~~~~~k~va~fgs~ 96 (159)
T 3fni_A 55 GRCTGLVIGMSPAA-SAAS-IQGALSTILGSVNEKQAVGIFETG 96 (159)
T ss_dssp HTEEEEEEECCBTT-SHHH-HHHHHHHHHHHCCTTSEEEEECCS
T ss_pred HhCCEEEEEcCcCC-CCcc-HHHHHHHHHhhcccCCEEEEEEcC
Confidence 45778877765554 2243 245666665544467888888874
No 378
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=25.46 E-value=1.2e+02 Score=18.53 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=30.0
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
+.+.||+++.-- -++++....++.... ..+.|+|+.|--.-...
T Consensus 88 ~~~~dGvVItHG---TDTm~~TA~~L~~~l---~~~kPVVlTGa~rp~~~ 131 (337)
T 4pga_A 88 SNDVDGIVITHG---TDTLEETAYFLNLVQ---KTDKPIVVVGSMRPGTA 131 (337)
T ss_dssp CTTCSEEEEECC---STTHHHHHHHHHHHC---CCCSCEEEECCSSCTTS
T ss_pred ccCCCeEEEECC---CccHHHHHHHHHHHc---CCCCCEEEeCCCCCCCC
Confidence 456889888753 456667666666543 36789999998765543
No 379
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=25.43 E-value=82 Score=16.54 Aligned_cols=42 Identities=17% Similarity=0.066 Sum_probs=24.6
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNK 51 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK 51 (72)
..+|++++...+-. ..+-. ..+++.+......+.++.++|+-
T Consensus 50 ~~~d~ii~Gspty~-g~~p~-~~fl~~l~~~~l~gk~v~~fgs~ 91 (161)
T 3hly_A 50 SSARGIVLGTPPSQ-PSEAV-ATALSTIFAAAHNKQAIGLFDSY 91 (161)
T ss_dssp HHCSEEEEECCBSS-CCHHH-HHHHHHHHHHCCTTSEEEEECCC
T ss_pred HhCCEEEEEcCCcC-CchhH-HHHHHHHHhhhhCCCEEEEEEcC
Confidence 35788888766554 22322 45555554433356788888864
No 380
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=25.26 E-value=1.3e+02 Score=18.63 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=30.0
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
|.+.||+++.-- -++++....++....+ ..+.|+|+.|--.-...
T Consensus 99 ~~~~dG~VItHG---TDTmeeTA~~Ls~~l~--~~~kPVVlTGAmrP~~~ 143 (358)
T 2him_A 99 YDDYDGFVILHG---TDTMAYTASALSFMLE--NLGKPVIVTGSQIPLAE 143 (358)
T ss_dssp GGGCSEEEEECC---STTHHHHHHHHHHHEE--TCCSCEEEECCSSCTTS
T ss_pred HhcCCeEEEecC---chHHHHHHHHHHHHHh--cCCCCEEEeCCCCCCcC
Confidence 456888888743 4566676666655533 25689999998766543
No 381
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=25.17 E-value=62 Score=16.45 Aligned_cols=42 Identities=5% Similarity=-0.008 Sum_probs=19.2
Q ss_pred CCCEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 9 GALGALLVYDVTKS---TTFENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 9 ~a~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
.+|+++++..+-.. .--..+..+++.+....-.+.++.++|+
T Consensus 49 ~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~~vfg~ 93 (148)
T 3f6r_A 49 GYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKVAAFAS 93 (148)
T ss_dssp TCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEEEEEEE
T ss_pred cCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEEEEEEe
Confidence 66777776654332 1112334444443322224456655544
No 382
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=25.10 E-value=67 Score=15.42 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=18.6
Q ss_pred EEEEEEECCChhhHHHHHHHHHHH
Q 047889 12 GALLVYDVTKSTTFENVSRWLKDL 35 (72)
Q Consensus 12 ~~i~v~d~~~~~s~~~~~~~~~~~ 35 (72)
|-++..-++++.+.++++.|....
T Consensus 29 G~~L~V~~dd~~a~~dI~~~~~~~ 52 (87)
T 3hz7_A 29 GGVVTVLVDNDISRQNLQKMAEGM 52 (87)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHHC
Confidence 445555668999999999998765
No 383
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.85 E-value=69 Score=15.50 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=9.7
Q ss_pred CCCeEEEEeeCCC
Q 047889 41 SNIVIMLIGNKSD 53 (72)
Q Consensus 41 ~~~~~vlvgnK~D 53 (72)
+.+|++++....+
T Consensus 79 ~~~~ii~ls~~~~ 91 (140)
T 2qr3_A 79 RDLPVVLFTAYAD 91 (140)
T ss_dssp TTCCEEEEEEGGG
T ss_pred cCCCEEEEECCCC
Confidence 6788888877654
No 384
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=24.80 E-value=1.2e+02 Score=18.28 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=31.2
Q ss_pred chhhCCCEEEEEEECCCh------hhH----HHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 5 AYYRGALGALLVYDVTKS------TTF----ENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~------~s~----~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
.-+.+||.+++...+... +.| .-++...+.+.+.. ++..+++++|=.|.
T Consensus 71 ~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~ 129 (324)
T 3gvi_A 71 AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDA 129 (324)
T ss_dssp GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHH
Confidence 346789999998654432 122 22345556666665 77888888987774
No 385
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=24.60 E-value=1.2e+02 Score=18.10 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=26.6
Q ss_pred hhCCCEEEEEEECCChhh----------HHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 7 YRGALGALLVYDVTKSTT----------FENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
+++||.+++......... ..-+....+.+.+.. ++.-++++.|-.|.
T Consensus 72 ~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~ 128 (318)
T 1y6j_A 72 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDI 128 (318)
T ss_dssp GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHH
T ss_pred hCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCcHHH
Confidence 678999988776543211 111345555666654 56666777776653
No 386
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=24.53 E-value=77 Score=15.91 Aligned_cols=40 Identities=13% Similarity=0.045 Sum_probs=23.9
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~D 53 (72)
.|.+++-+.+.+...++-++ .+++... +.+|++++....+
T Consensus 52 ~dlii~D~~l~~~~g~~~~~----~lr~~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 52 PDLIISDVLMPEMDGYALCR----WLKGQPDLRTIPVILLTILSD 92 (154)
T ss_dssp CSEEEEESCCSSSCHHHHHH----HHHHSTTTTTSCEEEEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHH----HHHhCCCcCCCCEEEEECCCC
Confidence 46666666666656555433 3444332 6788888876555
No 387
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=24.45 E-value=30 Score=17.67 Aligned_cols=10 Identities=20% Similarity=-0.194 Sum_probs=5.8
Q ss_pred CCEEEEEEEC
Q 047889 10 ALGALLVYDV 19 (72)
Q Consensus 10 a~~~i~v~d~ 19 (72)
+|++++++.+
T Consensus 49 ~d~ii~~~p~ 58 (147)
T 1f4p_A 49 FDLVLLGCST 58 (147)
T ss_dssp CSEEEEEECE
T ss_pred CCEEEEEeCC
Confidence 6666665443
No 388
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=24.17 E-value=1.3e+02 Score=20.48 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=23.8
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
+++.-.+++|..+. -...++++++.. .++|+++++++-+
T Consensus 49 ~~~i~avIld~d~~-----~~~ll~~Ir~~~-~~iPVFl~~~~~~ 87 (715)
T 3n75_A 49 NARLCGVIFDWDKY-----NLELCEEISKMN-ENLPLYAFANTYS 87 (715)
T ss_dssp CTTEEEEEEEHHHH-----HHHHHHHHHHHC-TTCEEEEECCTTC
T ss_pred CCCceEEEEecccc-----HHHHHHHHHHhC-CCCCEEEEecCCc
Confidence 34444455554443 134566666654 7899999998843
No 389
>2bog_X Endoglucanase E-2; hydrolase, thermobifida fusca, TIM A/B fold, glycoside hydrolase family 6; HET: MGL SGC BGC; 1.04A {Thermomonospora fusca} PDB: 2bof_X* 2boe_X* 2bod_X* 1tml_A* 3ru8_X 3rpt_X
Probab=24.09 E-value=1.2e+02 Score=18.25 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=22.6
Q ss_pred CEEEEEEECCChh----------hHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 11 LGALLVYDVTKST----------TFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 11 ~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
-.++++|++-+++ +.+.=+.|++.+.... .+.|+++|
T Consensus 67 ~pvlVvY~lP~RDCa~aS~Gg~~~~~~Yk~~Id~ia~~i-~~~~~vvI 113 (286)
T 2bog_X 67 IPILVVSNAPGRDCGNHSSGGAPSHSAYRSWIDEFAAGL-KNRPAYII 113 (286)
T ss_dssp BCEEEECCCSCSCCC------CSSHHHHHHHHHHHHHTT-TTCCCEEE
T ss_pred ceEEEEeCCCCCCcccccCCCCCCHHHHHHHHHHHHHHh-CCCceEEE
Confidence 3468888888764 3444467888876654 33454443
No 390
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=24.09 E-value=1.3e+02 Score=18.25 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=20.5
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
+++||+|+ ...+.+ ..+.+ ...++|+|+++...+
T Consensus 75 ~~vDGiIi--~~~~~~-------~~~~l---~~~~iPvV~i~~~~~ 108 (412)
T 4fe7_A 75 WLGDGVIA--DFDDKQ-------IEQAL---ADVDVPIVGVGGSYH 108 (412)
T ss_dssp CCCSEEEE--ETTCHH-------HHHHH---TTCCSCEEEEEECCS
T ss_pred CCCCEEEE--ecCChH-------HHHHH---hhCCCCEEEecCCcc
Confidence 46899887 222221 22222 235799999998765
No 391
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=23.96 E-value=1.1e+02 Score=18.20 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=28.0
Q ss_pred hhhCCCEEEEEEECCChhh----------HHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 6 YYRGALGALLVYDVTKSTT----------FENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
-+++||.+++......... ..-++...+.+.+.. ++.-++++.|=.|.
T Consensus 69 a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~ 126 (318)
T 1ez4_A 69 DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDI 126 (318)
T ss_dssp GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCcHHH
Confidence 3678999988775543321 122345555666664 66777777887764
No 392
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=23.59 E-value=39 Score=18.12 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=16.5
Q ss_pred EEEEECCChhhHHHHHHHH
Q 047889 14 LLVYDVTKSTTFENVSRWL 32 (72)
Q Consensus 14 i~v~d~~~~~s~~~~~~~~ 32 (72)
+.|-|++++..+..++.|-
T Consensus 100 ~~iPDLtd~~nvk~Lr~W~ 118 (144)
T 2kkm_A 100 FLCPDLSDAKNMEFLRNWN 118 (144)
T ss_dssp EEEECSCCHHHHHHHHTCS
T ss_pred ccCCCCCCHHHHHHHHHcC
Confidence 5678999999999998883
No 393
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=23.55 E-value=96 Score=16.71 Aligned_cols=13 Identities=8% Similarity=-0.069 Sum_probs=8.6
Q ss_pred hhCCCEEEEEEEC
Q 047889 7 YRGALGALLVYDV 19 (72)
Q Consensus 7 ~~~a~~~i~v~d~ 19 (72)
+..+|++|+..-+
T Consensus 52 l~~~D~ii~gsP~ 64 (193)
T 3d7n_A 52 LDAADAIIFGTPT 64 (193)
T ss_dssp HHHCSEEEEEEEE
T ss_pred HHHCCEEEEEeCc
Confidence 4567888876544
No 394
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.28 E-value=1.2e+02 Score=17.67 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=21.7
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
++||+|++-+ . ... ...++. .....+|+|++++..+-
T Consensus 62 ~vDgiIi~~~--~-~~~---~~~~~~---~~~~giPvV~~~~~~~~ 98 (350)
T 3h75_A 62 KPDYLMLVNE--Q-YVA---PQILRL---SQGSGIKLFIVNSPLTL 98 (350)
T ss_dssp CCSEEEEECC--S-SHH---HHHHHH---HTTSCCEEEEEESCCCT
T ss_pred CCCEEEEeCc--h-hhH---HHHHHH---HHhCCCcEEEEcCCCCh
Confidence 7899888631 1 111 122222 23367999999987654
No 395
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=23.28 E-value=70 Score=19.47 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=23.0
Q ss_pred hCCCEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCeEE-EEee
Q 047889 8 RGALGALLVYDVTKST--TFENVSRWLKDLRDHAGSNIVIM-LIGN 50 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~v-lvgn 50 (72)
.++|.+++.-|+.+.. +........+.+.+.....+|++ +.||
T Consensus 59 ~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~GN 104 (386)
T 3av0_A 59 IKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGN 104 (386)
T ss_dssp TCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEECCCG
T ss_pred cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 3689999998987643 22222223333333322346754 4566
No 396
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=23.21 E-value=74 Score=15.25 Aligned_cols=40 Identities=5% Similarity=0.072 Sum_probs=23.1
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~D 53 (72)
.|.+++-+++.+.+.++-++ .+++.. .+.+|++++....+
T Consensus 48 ~dlvi~d~~l~~~~g~~~~~----~l~~~~~~~~~pii~~s~~~~ 88 (133)
T 3nhm_A 48 PDVLISDVNMDGMDGYALCG----HFRSEPTLKHIPVIFVSGYAP 88 (133)
T ss_dssp CSEEEECSSCSSSCHHHHHH----HHHHSTTTTTCCEEEEESCCC
T ss_pred CCEEEEeCCCCCCCHHHHHH----HHHhCCccCCCCEEEEeCCCc
Confidence 46666655555555555433 344432 25788888876554
No 397
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=23.19 E-value=89 Score=17.48 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=20.6
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
+++||+|++-...+.+ .++.+.+ .++|+|++++..+-
T Consensus 68 ~~vdgiIi~~~~~~~~-------~~~~l~~---~~iPvV~~~~~~~~ 104 (292)
T 3k4h_A 68 RQIGGIILLYSRENDR-------IIQYLHE---QNFPFVLIGKPYDR 104 (292)
T ss_dssp TCCCEEEESCCBTTCH-------HHHHHHH---TTCCEEEESCCSSC
T ss_pred CCCCEEEEeCCCCChH-------HHHHHHH---CCCCEEEECCCCCC
Confidence 4678887753221111 2223332 46899999877643
No 398
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=23.19 E-value=77 Score=15.43 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=13.2
Q ss_pred HHHHHhcCCCCeEEEEeeCCCC
Q 047889 33 KDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 33 ~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
..+++.. +.+|++++....+.
T Consensus 72 ~~l~~~~-~~~~ii~~s~~~~~ 92 (136)
T 3kto_A 72 ETLVKRG-FHLPTIVMASSSDI 92 (136)
T ss_dssp HHHHHTT-CCCCEEEEESSCCH
T ss_pred HHHHhCC-CCCCEEEEEcCCCH
Confidence 3444443 67888888776653
No 399
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=23.03 E-value=74 Score=15.19 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=23.7
Q ss_pred CCCEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 9 GALGALLVYDVTK-STTFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 9 ~a~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
..|.+++-+++.+ ...++-++ .+++.. +.+|++++....+.
T Consensus 50 ~~dlvi~d~~l~~~~~g~~~~~----~l~~~~-~~~~ii~~s~~~~~ 91 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGWQVAR----VAREID-PNMPIVYISGHAAL 91 (132)
T ss_dssp CCCEEEEESCCSSSSCHHHHHH----HHHHHC-TTCCEEEEESSCCT
T ss_pred CCCEEEEeeeCCCCCCHHHHHH----HHHhcC-CCCCEEEEeCCccH
Confidence 3566666555554 45554433 334333 57888888776653
No 400
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=22.86 E-value=61 Score=21.31 Aligned_cols=49 Identities=14% Similarity=-0.009 Sum_probs=25.1
Q ss_pred chhhCCCEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCeEEEEeeCCCCcc
Q 047889 5 AYYRGALGALLVYDVTKSTTFE-NVSRWLKDLRDHAGSNIVIMLIGNKSDLKH 56 (72)
Q Consensus 5 ~y~~~a~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~ 56 (72)
.|.....++++++...+.+.-. .+.. .++.......+.++|.||.|+..
T Consensus 179 ~~l~~~~~iil~vvt~~~d~a~~~~l~---la~~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 179 KYIQRQETISLVVVPSNVDIATTEALS---MAQEVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp HHTTSSSCCEEEEEESSSCTTTCHHHH---HHHHHCSSCCSEEEEEECGGGSS
T ss_pred HHHhcCCCCceEEEeccchhccHHHHH---HHHHHhhcCCceEEEecchhhcC
Confidence 3445555555555443332111 1122 23333334578899999999853
No 401
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=22.83 E-value=81 Score=15.60 Aligned_cols=43 Identities=0% Similarity=0.010 Sum_probs=23.4
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|.+++=+.+.+.+.++-++... .........+|++++....+
T Consensus 59 ~dlvl~D~~mp~~~g~~~~~~lr-~~~~~~~~~~pii~~s~~~~ 101 (143)
T 3m6m_D 59 YDAVIVDLHMPGMNGLDMLKQLR-VMQASGMRYTPVVVLSADVT 101 (143)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHH-HHHHTTCCCCCEEEEESCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hchhccCCCCeEEEEeCCCC
Confidence 46666655665656665544432 22222225678888776554
No 402
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=22.80 E-value=1.3e+02 Score=17.87 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=29.4
Q ss_pred hhhCCCEEEEEEECCChh----------hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 6 YYRGALGALLVYDVTKST----------TFENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
-+++||.+++...+.... ...-.+...+.+.+.. ++..+++++|=+|.
T Consensus 71 al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~~ 128 (316)
T 1ldn_A 71 DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDI 128 (316)
T ss_dssp GTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHH
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchHH
Confidence 367899999886554322 1122345566666665 56667778886653
No 403
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=22.69 E-value=81 Score=18.91 Aligned_cols=43 Identities=23% Similarity=0.151 Sum_probs=21.7
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
..+|+++++..+-.-.-...+..+++.+....-.+.++.++|+
T Consensus 301 ~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~~s 343 (398)
T 1ycg_A 301 LDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGA 343 (398)
T ss_dssp HHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEEE
T ss_pred HHCCEEEEECCccCccchHHHHHHHHHHhccccCCCEEEEEEe
Confidence 4678888876443322112244444444432224566666665
No 404
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=22.66 E-value=1.1e+02 Score=18.88 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=26.6
Q ss_pred CCCEEEEEEECCCh------hhH-HHHHHHHHHHHHhcCCCCeEEEEeeC
Q 047889 9 GALGALLVYDVTKS------TTF-ENVSRWLKDLRDHAGSNIVIMLIGNK 51 (72)
Q Consensus 9 ~a~~~i~v~d~~~~------~s~-~~~~~~~~~~~~~~~~~~~~vlvgnK 51 (72)
..|.+++.+-.+|- +.| .++...++.+++.. +..++++++-.
T Consensus 244 ~pdlVvI~lGtND~~~~~~~~~~~~~l~~li~~ir~~~-P~a~Illv~p~ 292 (385)
T 3skv_A 244 PADLISLRVGTSNFMDGDGFVDFPANLVGFVQIIRERH-PLTPIVLGSSV 292 (385)
T ss_dssp CCSEEEEEESHHHHTTTCCTTTHHHHHHHHHHHHHTTC-SSSCEEEEECC
T ss_pred CCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCcEEEEcCC
Confidence 56888887755442 223 34566666676543 67888888855
No 405
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=22.40 E-value=94 Score=18.95 Aligned_cols=47 Identities=6% Similarity=0.004 Sum_probs=30.3
Q ss_pred hhCCCEEEEEEECCCh------hh-H---HHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 047889 7 YRGALGALLVYDVTKS------TT-F---ENVSRWLKDLRDHAGSNIVIMLIGNKSDL 54 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~------~s-~---~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl 54 (72)
+++||.+|+.-....+ +- . .-++...+.+.++. ++.-+++++|=.|.
T Consensus 87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvtNPvdi 143 (330)
T 3ldh_A 87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHPELGTD 143 (330)
T ss_dssp CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHH
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCCCccHH
Confidence 6788998887654432 11 1 22355666677664 77778888887774
No 406
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=22.37 E-value=80 Score=15.34 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=22.4
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDH-AGSNIVIMLIGNKSDL 54 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~vlvgnK~Dl 54 (72)
.|.+++-+++.+...++- ...+++. ..+.+|++++....+.
T Consensus 52 ~dlii~d~~l~~~~g~~~----~~~l~~~~~~~~~pii~~s~~~~~ 93 (142)
T 3cg4_A 52 SGVVLLDIMMPGMDGWDT----IRAILDNSLEQGIAIVMLTAKNAP 93 (142)
T ss_dssp CEEEEEESCCSSSCHHHH----HHHHHHTTCCTTEEEEEEECTTCC
T ss_pred CCEEEEeCCCCCCCHHHH----HHHHHhhcccCCCCEEEEECCCCH
Confidence 345555445544455543 3334442 2367899888877653
No 407
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.35 E-value=1.2e+02 Score=17.20 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=20.2
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
+++||+|++-...+.+ .++.+.+ .++|+|+++...+
T Consensus 64 ~~vdGiIi~~~~~~~~-------~~~~l~~---~~iPvV~~~~~~~ 99 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDF-------RLQYLQK---QNFPFLALGRSHL 99 (294)
T ss_dssp TCCSEEEECSCCSSCH-------HHHHHHH---TTCCEEEESCCCC
T ss_pred CCCCEEEEeCCCCChH-------HHHHHHh---CCCCEEEECCCCC
Confidence 4688877754322221 2223332 4689999887644
No 408
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.35 E-value=99 Score=17.35 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=10.8
Q ss_pred CCCCeEEEEeeCCC
Q 047889 40 GSNIVIMLIGNKSD 53 (72)
Q Consensus 40 ~~~~~~vlvgnK~D 53 (72)
..++|+|++++..+
T Consensus 85 ~~~iPvV~~~~~~~ 98 (291)
T 3egc_A 85 PKTFPIVAVNRELR 98 (291)
T ss_dssp CTTSCEEEESSCCC
T ss_pred ccCCCEEEEecccC
Confidence 35799999988765
No 409
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=22.28 E-value=1.2e+02 Score=17.49 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=26.0
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNK 51 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK 51 (72)
.++|++.+-. ++--+++.+....+.+++ .++|+++.+.-
T Consensus 32 ~GaD~IelG~--S~g~t~~~~~~~v~~ir~---~~~Pivl~~y~ 70 (234)
T 2f6u_A 32 SGTDAVMISG--TQNVTYEKARTLIEKVSQ---YGLPIVVEPSD 70 (234)
T ss_dssp TTCSEEEECC--CTTCCHHHHHHHHHHHTT---SCCCEEECCSS
T ss_pred cCCCEEEECC--CCCCCHHHHHHHHHHhcC---CCCCEEEecCC
Confidence 4678877766 344556777677777765 46888886544
No 410
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=27.87 E-value=19 Score=20.02 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=7.1
Q ss_pred hhCCCEEEEEEE
Q 047889 7 YRGALGALLVYD 18 (72)
Q Consensus 7 ~~~a~~~i~v~d 18 (72)
+..||++|++.-
T Consensus 71 i~~AD~iIi~tP 82 (199)
T 3s2y_A 71 IATADAVVIVTP 82 (199)
Confidence 345677776543
No 411
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.21 E-value=91 Score=17.72 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=20.5
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
+++||+|++-...+.+ .++.+.+ ..+|+|+++...+
T Consensus 82 ~~vdgiIi~~~~~~~~-------~~~~l~~---~~iPvV~i~~~~~ 117 (305)
T 3huu_A 82 KSVDGFILLYSLKDDP-------IEHLLNE---FKVPYLIVGKSLN 117 (305)
T ss_dssp TCCSEEEESSCBTTCH-------HHHHHHH---TTCCEEEESCCCS
T ss_pred CCCCEEEEeCCcCCcH-------HHHHHHH---cCCCEEEECCCCc
Confidence 4688887753221111 2223332 4699999998764
No 412
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=22.13 E-value=1e+02 Score=16.40 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=25.6
Q ss_pred hhCCCEEEEEEECCChhhH---------HHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 7 YRGALGALLVYDVTKSTTF---------ENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~---------~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
+...|.+++.+.+-....+ ..+..+++.+........++.++|+
T Consensus 44 l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~~l~~~~l~gk~~a~fg~ 96 (179)
T 1yob_A 44 FAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGL 96 (179)
T ss_dssp HHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHHHTTCCCTTCEEEEEEE
T ss_pred HhcCCEEEEEeccCCCCcCCcccccccchHHHHHHHHhhhcccCCCEEEEEEE
Confidence 4567899998887442211 1244555555432224567777777
No 413
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=22.04 E-value=1e+02 Score=16.37 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=24.0
Q ss_pred CCCEEEEEEECCChh------h-HHHHHHHHHHHHHhcCCCCeEEEEee
Q 047889 9 GALGALLVYDVTKST------T-FENVSRWLKDLRDHAGSNIVIMLIGN 50 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~------s-~~~~~~~~~~~~~~~~~~~~~vlvgn 50 (72)
..+.+++.+-.+|.. . ...+...++.+++.. +..++++++.
T Consensus 85 ~pd~vvi~~G~ND~~~~~~~~~~~~~l~~~i~~l~~~~-p~~~iil~~~ 132 (214)
T 2hsj_A 85 AVDKIFLLIGTNDIGKDVPVNEALNNLEAIIQSVARDY-PLTEIKLLSI 132 (214)
T ss_dssp CCCEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHHHC-TTCEEEEECC
T ss_pred CCCEEEEEEecCcCCcCCCHHHHHHHHHHHHHHHHHhC-CCCeEEEEec
Confidence 457777777555432 2 234455666666554 5577777764
No 414
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.64 E-value=80 Score=15.10 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=23.6
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAG-SNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vlvgnK~D 53 (72)
..|.+++-+++.+...++-++ .+++... +.+|++++....+
T Consensus 55 ~~dlvi~d~~~~~~~g~~~~~----~l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 55 RPDLILLXLNLPKKDGREVLA----EIKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp CCSEEEECSSCSSSCHHHHHH----HHHHSTTGGGSCEEEEESCCC
T ss_pred CCcEEEEecCCCcccHHHHHH----HHHcCcccccccEEEEecCCc
Confidence 356666666665555555433 3343321 5688888877665
No 415
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=21.62 E-value=1.1e+02 Score=18.25 Aligned_cols=57 Identities=12% Similarity=-0.001 Sum_probs=32.8
Q ss_pred CCCEEEEEEECC---ChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHh
Q 047889 9 GALGALLVYDVT---KSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSDLKHLLNSMCEEYLIKSR 70 (72)
Q Consensus 9 ~a~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~Dl~~~~~v~~~e~~~~a~ 70 (72)
++|+++++--.- .+.+-+.+..++..+-+.. +.|+++-=+- . ....++.+...++++
T Consensus 103 Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~--~lPiilYn~P--~-tg~~l~~~~~~~La~ 162 (309)
T 3fkr_A 103 GAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAI--AIPIMVQDAP--A-SGTALSAPFLARMAR 162 (309)
T ss_dssp TCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHC--SSCEEEEECG--G-GCCCCCHHHHHHHHH
T ss_pred CCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC--C-CCCCCCHHHHHHHHh
Confidence 688888874322 2335566766777776553 6887775322 1 223455666666653
No 416
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.57 E-value=1.2e+02 Score=17.27 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=10.7
Q ss_pred CCCeEEEEeeCCCC
Q 047889 41 SNIVIMLIGNKSDL 54 (72)
Q Consensus 41 ~~~~~vlvgnK~Dl 54 (72)
..+|+|++++..+-
T Consensus 82 ~~iPvV~~~~~~~~ 95 (313)
T 3m9w_A 82 EGIKVLAYDRMIND 95 (313)
T ss_dssp TTCEEEEESSCCTT
T ss_pred CCCeEEEECCcCCC
Confidence 56999999876653
No 417
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=21.46 E-value=1.4e+02 Score=17.66 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=24.7
Q ss_pred hCCCEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCeEEE-EeeCCCC
Q 047889 8 RGALGALLVYDVTKST--TFENVSRWLKDLRDHAGSNIVIML-IGNKSDL 54 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vl-vgnK~Dl 54 (72)
.++|.+++.-|+.+.. +........+.+.......+|+++ .|| -|.
T Consensus 39 ~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~GN-HD~ 87 (333)
T 1ii7_A 39 ENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGN-HDR 87 (333)
T ss_dssp TTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECCT-TTC
T ss_pred cCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCCc-CCC
Confidence 3689999998987632 223333333334333333467544 455 443
No 418
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=21.43 E-value=58 Score=15.54 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=12.2
Q ss_pred hhCCCEEEEEEECCCh
Q 047889 7 YRGALGALLVYDVTKS 22 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~ 22 (72)
+.+|++.+++|+.+..
T Consensus 37 LCdaeV~livfs~~gk 52 (77)
T 1egw_A 37 LCDCEIALIIFNSSNK 52 (77)
T ss_dssp HTTCEEEEEEECTTCC
T ss_pred ccCCeEEEEEECCCCC
Confidence 4578888999987763
No 419
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.37 E-value=84 Score=15.23 Aligned_cols=40 Identities=5% Similarity=0.152 Sum_probs=21.1
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEe-eCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIG-NKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvg-nK~D 53 (72)
..|.+++-+.+.+...++- ...+++. .+.+|++++. ...+
T Consensus 60 ~~dlvilD~~l~~~~g~~~----~~~l~~~-~~~~~ii~ls~~~~~ 100 (138)
T 2b4a_A 60 TCDLLIVSDQLVDLSIFSL----LDIVKEQ-TKQPSVLILTTGRHE 100 (138)
T ss_dssp SCSEEEEETTCTTSCHHHH----HHHHTTS-SSCCEEEEEESCC--
T ss_pred CCCEEEEeCCCCCCCHHHH----HHHHHhh-CCCCCEEEEECCCCC
Confidence 3566655555554455443 3334442 3678988887 5544
No 420
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=21.31 E-value=32 Score=19.40 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=9.6
Q ss_pred CCCeEEEEeeC-CC
Q 047889 41 SNIVIMLIGNK-SD 53 (72)
Q Consensus 41 ~~~~~vlvgnK-~D 53 (72)
.++|+|+++.. .+
T Consensus 84 ~~iPvV~~~~~~~~ 97 (277)
T 3hs3_A 84 LNTPLVMYDSANIN 97 (277)
T ss_dssp CSSCEEEESCCCCC
T ss_pred CCCCEEEEcccccC
Confidence 56888888876 54
No 421
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=21.13 E-value=1e+02 Score=17.36 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=19.0
Q ss_pred hCCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 047889 8 RGALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNK 51 (72)
Q Consensus 8 ~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK 51 (72)
+++||+|+.- .+..... ..++.+.+ ..+|+|++++.
T Consensus 56 ~~vdgiii~~--~~~~~~~---~~~~~~~~---~~iPvV~~~~~ 91 (306)
T 8abp_A 56 SGAKGFVICT--PDPKLGS---AIVAKARG---YDMKVIAVDDQ 91 (306)
T ss_dssp TTCCEEEEEC--SCGGGHH---HHHHHHHH---TTCEEEEESSC
T ss_pred cCCCEEEEeC--CCchhhH---HHHHHHHH---CCCcEEEeCCC
Confidence 4577876653 2222222 12223332 46999999864
No 422
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=21.07 E-value=1.1e+02 Score=16.59 Aligned_cols=30 Identities=7% Similarity=0.141 Sum_probs=20.7
Q ss_pred hhhCCCEEEEEEECCChhhHHHHHHHHHHH
Q 047889 6 YYRGALGALLVYDVTKSTTFENVSRWLKDL 35 (72)
Q Consensus 6 y~~~a~~~i~v~d~~~~~s~~~~~~~~~~~ 35 (72)
-+..||++|+.+-+=.-.-=..++.|++.+
T Consensus 48 ~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv 77 (177)
T 3ha2_A 48 LLLQNDRIILEFPLYWYSAPALLKQWMDTV 77 (177)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHhCCEEEEECChhhccCCHHHHHHHHHH
Confidence 356899999998765544334456788776
No 423
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=21.00 E-value=83 Score=15.02 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=22.4
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|.+++-+.+.+...++-++ .+++.. +.+|++++....+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~----~l~~~~-~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIR----HLAEHK-SPASLILISGYDS 85 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHH----HHHHTT-CCCEEEEEESSCH
T ss_pred CCEEEEeCCCCCCCHHHHHH----HHHhCC-CCCCEEEEEeccc
Confidence 45555555555555555433 344433 6788888876654
No 424
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.87 E-value=83 Score=14.95 Aligned_cols=42 Identities=10% Similarity=0.133 Sum_probs=25.4
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSDL 54 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~Dl 54 (72)
..|.+++-+++.+...++-++ .+++.. .+.+|++++....+.
T Consensus 47 ~~dlii~D~~l~~~~g~~~~~----~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 47 GYDAVFIDLNLPDTSGLALVK----QLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp CCSEEEEESBCSSSBHHHHHH----HHHHSCCSSCCEEEEEECC-CT
T ss_pred CCCEEEEeCCCCCCCHHHHHH----HHHhhhccCCCCEEEEECCcch
Confidence 356777766776666665433 344432 367898888776654
No 425
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=20.77 E-value=82 Score=14.88 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=22.3
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlvgnK~D 53 (72)
.|.+++=+.+.+.+.++-++ .+++. .+.+|++++....+
T Consensus 48 ~dlvl~D~~l~~~~g~~~~~----~l~~~-~~~~~ii~~s~~~~ 86 (124)
T 1srr_A 48 PDLVLLDMKIPGMDGIEILK----RMKVI-DENIRVIIMTAYGE 86 (124)
T ss_dssp CSEEEEESCCTTCCHHHHHH----HHHHH-CTTCEEEEEESSCC
T ss_pred CCEEEEecCCCCCCHHHHHH----HHHHh-CCCCCEEEEEccCc
Confidence 46555555555545554433 33433 36789888876655
No 426
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=20.77 E-value=1.5e+02 Score=17.75 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=25.5
Q ss_pred CC-CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCeEEEE
Q 047889 9 GA-LGALLVYDVTKSTTFENVSRWLKDLRDHAGSNIVIMLI 48 (72)
Q Consensus 9 ~a-~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vlv 48 (72)
++ |+++++--.-.+.+-+.+..++..+-+. .+.|+++-
T Consensus 102 Ga~davlv~~P~y~~~s~~~l~~~f~~va~a--~~lPiilY 140 (311)
T 3h5d_A 102 GGFAAGLAIVPYYNKPSQEGMYQHFKAIADA--SDLPIIIY 140 (311)
T ss_dssp CCCSEEEEECCCSSCCCHHHHHHHHHHHHHS--CSSCEEEE
T ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh--CCCCEEEE
Confidence 55 8888875444444556777777777654 36888875
No 427
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=20.47 E-value=89 Score=15.16 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=24.1
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHh---cCCCCeEEEEeeCCC
Q 047889 9 GALGALLVYDVTKSTTFENVSRWLKDLRDH---AGSNIVIMLIGNKSD 53 (72)
Q Consensus 9 ~a~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~vlvgnK~D 53 (72)
..|.+++-+.+.+...++-++. +++. ....+|++++....+
T Consensus 60 ~~dlvi~D~~l~~~~g~~~~~~----l~~~~~~~~~~~~ii~~t~~~~ 103 (146)
T 3ilh_A 60 WPSIICIDINMPGINGWELIDL----FKQHFQPMKNKSIVCLLSSSLD 103 (146)
T ss_dssp CCSEEEEESSCSSSCHHHHHHH----HHHHCGGGTTTCEEEEECSSCC
T ss_pred CCCEEEEcCCCCCCCHHHHHHH----HHHhhhhccCCCeEEEEeCCCC
Confidence 3566666666666666654443 3432 236788888766554
No 428
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.44 E-value=79 Score=15.48 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=20.4
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~D 53 (72)
.|.+++-+.+.+...++- +..+++.. .+.+|++++....+
T Consensus 52 ~dlii~D~~l~~~~g~~~----~~~lr~~~~~~~~pii~~s~~~~ 92 (144)
T 3kht_A 52 YDLIILDIGLPIANGFEV----MSAVRKPGANQHTPIVILTDNVS 92 (144)
T ss_dssp CSEEEECTTCGGGCHHHH----HHHHHSSSTTTTCCEEEEETTCC
T ss_pred CCEEEEeCCCCCCCHHHH----HHHHHhcccccCCCEEEEeCCCC
Confidence 344444333333334433 33444421 36788888877655
No 429
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=20.33 E-value=86 Score=14.95 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=22.6
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVTKSTTFENVSRWLKDLRDHA-GSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vlvgnK~D 53 (72)
.|.+++=+.+.+.+.++-++ .+++.. .+.+|++++....+
T Consensus 47 ~dlvllD~~~p~~~g~~~~~----~l~~~~~~~~~pii~~s~~~~ 87 (122)
T 3gl9_A 47 PDLIVLXIMMPVMDGFTVLK----KLQEKEEWKRIPVIVLTAKGG 87 (122)
T ss_dssp CSEEEECSCCSSSCHHHHHH----HHHTSTTTTTSCEEEEESCCS
T ss_pred CCEEEEeccCCCCcHHHHHH----HHHhcccccCCCEEEEecCCc
Confidence 46555555555555555433 344332 25788888776554
No 430
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=20.26 E-value=58 Score=16.99 Aligned_cols=13 Identities=0% Similarity=-0.240 Sum_probs=7.5
Q ss_pred hhCCCEEEEEEEC
Q 047889 7 YRGALGALLVYDV 19 (72)
Q Consensus 7 ~~~a~~~i~v~d~ 19 (72)
+...|.+++++.+
T Consensus 44 l~~~d~ii~g~pt 56 (169)
T 1czn_A 44 LNAYDYLIIGCPT 56 (169)
T ss_dssp GGGCSEEEEECCE
T ss_pred HhhCCEEEEEecc
Confidence 4456666666544
No 431
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=20.25 E-value=87 Score=16.93 Aligned_cols=31 Identities=6% Similarity=0.163 Sum_probs=21.6
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHHH
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLRD 37 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~~ 37 (72)
+..||++|+.+-+=.-.-=..++.|++.+..
T Consensus 92 l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~ 122 (208)
T 2hpv_A 92 FLSADKVVIANPMWNLNVPTRLKAWVDTINV 122 (208)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHCC
T ss_pred HHhCCEEEEEeccccCCCCHHHHHHHHHHhc
Confidence 5679999998876654434456778877643
No 432
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.19 E-value=91 Score=15.15 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=21.5
Q ss_pred CCEEEEEEECC-ChhhHHHHHHHHHHHHHh-cCCCCeEEEEeeCCC
Q 047889 10 ALGALLVYDVT-KSTTFENVSRWLKDLRDH-AGSNIVIMLIGNKSD 53 (72)
Q Consensus 10 a~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-~~~~~~~vlvgnK~D 53 (72)
.|.+++-+.+. +...++-++ .+++. ..+.+|++++....+
T Consensus 51 ~dlvi~D~~l~~~~~g~~~~~----~l~~~~~~~~~~ii~ls~~~~ 92 (140)
T 3lua_A 51 ITLIIMDIAFPVEKEGLEVLS----AIRNNSRTANTPVIIATKSDN 92 (140)
T ss_dssp CSEEEECSCSSSHHHHHHHHH----HHHHSGGGTTCCEEEEESCCC
T ss_pred CcEEEEeCCCCCCCcHHHHHH----HHHhCcccCCCCEEEEeCCCC
Confidence 45555544444 444444333 34441 126788888876655
No 433
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=20.17 E-value=88 Score=17.05 Aligned_cols=30 Identities=7% Similarity=-0.010 Sum_probs=20.7
Q ss_pred hhCCCEEEEEEECCChhhHHHHHHHHHHHH
Q 047889 7 YRGALGALLVYDVTKSTTFENVSRWLKDLR 36 (72)
Q Consensus 7 ~~~a~~~i~v~d~~~~~s~~~~~~~~~~~~ 36 (72)
+..||++|+.+-+=+-.-=..++.|++.+.
T Consensus 71 l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~ 100 (196)
T 3lcm_A 71 VTWADHLIFIFPIWWSGMPAILKGFIDRVF 100 (196)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHhCCEEEEECchhhccccHHHHHHHHHHc
Confidence 467999999887655443344577888773
Done!