Your job contains 1 sequence.
>047890
MATAEATTASLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPPPLP
PGPPPAGSTPKLAPIPVAHSMQPNGMMIKQQMTQATPQEVQQVSQLPQQLGSMAAQVSDQ
HDPQQQGSQLGQSMQHPGKFAPQMRPQMMQYPVQEMPQHPGQPWLQQPGQQMQQQAIQQM
SQQSGQQSAPHENSQTAQPQGHQYPHQQLQYTAYQQGIPPQGKQSSHQQTQVGAQGKQFG
GQQDYNKAAITKREEAEFPPGNQTGFSPSNFQQTGASSSQNLPGGTNSMKTGAHLGHVQQ
FGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFENQMGPQMMHNNPPNLPPFGLGRGYED
NVHCRTGNDYYFNGNKDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLNAVAGHA
MHGMYSHAGSFPNNAMMRPTFMGSPGVTDLSPAEVYRQRHEVSATLPRVASMHSAGFSSP
TPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRE
LATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKID
FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPV
QVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLAR
SIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPN
GVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGP
GFGKDRGGVSRFNAGGGGGGGGHWDSGGRGGMRDGGFGGRADTRDGGFGGRGSVRDGGFG
GRGGMRDGGFGGRGGMRDGGFGGYEGRSGMFSGRGNRGRGFGGPAGGNVGWGRNDRGPHD
RYNNMDGRGRGRGRGRFDNRRDIADRSSRGRSRSRSPDRVRTWGYSSRSRSRSRSSRSSS
SSWSRSRSWSRGHSRSPSPSHNHSHSRSRSRSRSYDRYERPLDRKDRRVSGFDVLPESQT
SSMVPAAPMSPGLQGGVLPATGPTVLLQLVDSSVTEPVLPGKGADPDHQSVTEL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047890
(1134 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 1915 5.3e-228 3
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 1497 2.4e-175 3
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 1480 2.0e-171 2
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 1028 1.2e-106 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 1044 1.7e-105 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 1037 9.5e-105 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 1036 1.2e-104 1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 1035 1.6e-104 1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 1034 2.0e-104 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 1034 2.0e-104 1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 1034 2.0e-104 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 1034 2.0e-104 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 1034 2.0e-104 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 1034 2.0e-104 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 1034 2.0e-104 1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 960 3.1e-104 3
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 1014 3.2e-104 2
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 1023 2.9e-103 1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 1004 3.6e-103 2
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 1002 4.6e-103 2
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 1017 1.3e-102 1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 999 1.0e-100 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 989 1.2e-99 1
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 989 1.2e-99 1
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 989 1.2e-99 1
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 989 1.2e-99 1
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 989 1.2e-99 1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 989 1.2e-99 1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 989 1.2e-99 1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 983 5.0e-99 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 983 5.0e-99 1
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 982 6.4e-99 1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 982 6.4e-99 1
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 981 8.2e-99 1
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 943 2.6e-98 2
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 945 2.3e-97 2
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 876 8.0e-91 2
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 893 1.7e-89 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 893 1.7e-89 1
UNIPROTKB|E9PT29 - symbol:Ddx17 "Protein Ddx17" species:1... 879 5.3e-88 1
UNIPROTKB|B4DLW8 - symbol:DDX5 "Probable ATP-dependent RN... 857 1.1e-85 1
GENEDB_PFALCIPARUM|PFL1310c - symbol:PFL1310c "ATP-depend... 690 2.2e-84 3
SGD|S000003046 - symbol:DBP3 "RNA-Dependent ATPase, membe... 839 9.1e-84 1
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 807 1.5e-83 2
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 820 9.4e-82 1
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 817 2.0e-81 1
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 793 4.0e-81 2
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 812 6.6e-81 1
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 808 1.8e-80 1
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 788 2.2e-80 2
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 786 2.2e-80 2
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 805 3.7e-80 1
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 799 1.6e-79 1
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 793 6.8e-79 1
CGD|CAL0005460 - symbol:DBP3 species:5476 "Candida albica... 792 8.7e-79 1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 788 2.3e-78 1
POMBASE|SPBC17D1.06 - symbol:dbp3 "ATP-dependent RNA heli... 783 7.9e-78 1
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 782 1.0e-77 1
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 765 1.6e-77 2
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"... 779 2.1e-77 1
UNIPROTKB|Q86TM3 - symbol:DDX53 "Probable ATP-dependent R... 778 2.7e-77 1
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 775 5.5e-77 1
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 748 1.1e-76 2
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 656 2.1e-76 3
RGD|1304909 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box po... 745 2.2e-76 2
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 769 2.4e-76 1
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 765 6.3e-76 1
FB|FBgn0036104 - symbol:CG6418 species:7227 "Drosophila m... 763 1.0e-75 1
DICTYBASE|DDB_G0283661 - symbol:ddx3 "DEAD/DEAH box helic... 730 2.0e-75 2
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 759 2.7e-75 1
ASPGD|ASPL0000069536 - symbol:AN7424 species:162425 "Emer... 758 3.5e-75 1
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 736 4.1e-75 2
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 757 4.5e-75 1
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 756 5.7e-75 1
DICTYBASE|DDB_G0275443 - symbol:helB1 "putative RNA splic... 716 7.4e-75 3
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica... 753 1.2e-74 1
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 753 1.2e-74 1
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica... 753 1.2e-74 1
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 749 3.1e-74 1
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica... 749 3.1e-74 1
UNIPROTKB|F1RSJ7 - symbol:DDX42 "Uncharacterized protein"... 749 3.1e-74 1
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica... 749 3.1e-74 1
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 743 1.4e-73 1
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 741 2.2e-73 1
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 653 3.2e-73 2
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 737 5.9e-73 1
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 736 7.5e-73 1
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 736 7.5e-73 1
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 736 7.5e-73 1
UNIPROTKB|D6RDK4 - symbol:DDX4 "Probable ATP-dependent RN... 680 7.7e-73 3
UNIPROTKB|Q9NQI0 - symbol:DDX4 "Probable ATP-dependent RN... 680 7.7e-73 3
POMBASE|SPCC1795.11 - symbol:sum3 "translation initiation... 716 8.6e-73 2
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 734 1.2e-72 1
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 734 1.2e-72 1
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 734 1.2e-72 1
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 734 1.2e-72 1
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 734 1.2e-72 1
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 734 1.2e-72 1
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b... 731 2.5e-72 1
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 728 5.3e-72 1
WARNING: Descriptions of 885 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 1915 (679.2 bits), Expect = 5.3e-228, Sum P(3) = 5.3e-228
Identities = 413/679 (60%), Positives = 471/679 (69%)
Query: 191 HENSQTAQPQGHQYPHQQLQYTAYQQGIPPQGKQSSHQQTQVGAQGKQFGGQQDYNKAAI 250
+++SQ Q HQY H Q Y ++ + QG Q+SHQ Q G G+QF QQ+YN A
Sbjct: 163 NQHSQMPQQLSHQYAHSQQHYMGFRPHMQTQGLQNSHQTPQGGPHGQQFPSQQEYNSLA- 221
Query: 251 TKREEAEFPPGNQTGFSPSNFQQTGASSSQNLPGGTN--SMKTGAHLGHVQQFGGSSVTL 308
KRE EF G +TGFS + + S SQN N S KT A+L Q+ G
Sbjct: 222 PKREGDEFHGGKKTGFSQPHLPNSERSPSQNTHFEANAASQKTNANLAMAQKCNGP---- 277
Query: 309 QQPNPMV-QLQQTGTDMAHHQHGPRFENQMGPQMMHXXXXXXXXFGLGRGYEDNVHCRTG 367
Q N V Q QQ G ++ H Q GPR NQM M+H F YE+N+ R G
Sbjct: 278 -QANAAVTQFQQPGANLIHQQLGPRAPNQMDQTMLHQKSHVSP-FQSNNTYENNLQSRPG 335
Query: 368 NDYYFNGNKDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLNAVAGHAMHG---- 423
ND Y N + PV G Q AA+P ++ R+ G P A GH +G
Sbjct: 336 NDSYVNMRMEVPVRGAQPLHPAAMP-----KDIRISGGPPTNADPAMGQTGHGTYGHAGP 390
Query: 424 -------MYSHAGSFPNNAMMRPT--FMGSPGVTDLS---PAEVYRQRHEVSATLPRVA- 470
+ H + P+ + P + VT PA E S P +
Sbjct: 391 AFPNKSLVRPHFVTSPDVPHLSPVEIYRKQHEVTTTGENIPAPYIT--FESSGLPPEILR 448
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
+ SAGF SPTPIQAQTWPIALQ RDIVAIAKTGSGKTLGYLIPAFILLR N+ RNGP
Sbjct: 449 ELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGP 508
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
TVL+LAPTRELATQIQDEA +FGRSSR+SCTCLYGGAPKGPQL+EL++GADIVVATPGRL
Sbjct: 509 TVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRL 568
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
NDILEMK IDF QVSLLVLDEADRMLDMGFEPQIRKIVNE+PP RQTLMYTATWPK+VRK
Sbjct: 569 NDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRK 628
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
IASDLLVNPVQVNIG VDELAANKAITQ+VEVVPQMEKERRL+QILR+QERGS+VIIFCS
Sbjct: 629 IASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCS 688
Query: 711 TKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
TKRLCD LARS+GR+FGA+ IHGDK+QGERDWVLNQFRSGKS +L+ATDVAARGLDIKDI
Sbjct: 689 TKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDI 748
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
RVVINYDFP GVEDYVHRI VA TFF+EQD KYA DL+KVLEGANQ VPP+
Sbjct: 749 RVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQ 808
Query: 831 VRDMALRCG----PGFGKD 845
VRD+A+R G PG+ +D
Sbjct: 809 VRDIAMRGGGGGGPGYSQD 827
Score = 262 (97.3 bits), Expect = 5.3e-228, Sum P(3) = 5.3e-228
Identities = 53/82 (64%), Positives = 58/82 (70%)
Query: 1 MATAEATTASLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKXXXXXXXXX 60
MAT E T AS GPRYAP+DPTLP+PWKGLIDGSTG+LYYWNPETNVTQYE+
Sbjct: 1 MATTEDTPASAGPRYAPEDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAPPPHSA 60
Query: 61 XXXXXXXSTPKLAPIPVAHSMQ 82
+TPKLA IPV S Q
Sbjct: 61 -------TTPKLAQIPVPSSGQ 75
Score = 81 (33.6 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 36/127 (28%), Positives = 49/127 (38%)
Query: 191 HENSQTAQPQGHQYPHQQLQ-YTAYQQGIPP-QGKQSSHQQTQVGAQGKQFG-GQQDYNK 247
H Q Q G Q+P QQ Q + G P Q Q + QQ Q G Q + QQ ++
Sbjct: 116 HPAQQMPQQSGQQFPQQQSQSMVPHPHGHPSVQTYQPTTQQQQQGMQNQHSQMPQQLSHQ 175
Query: 248 AAITKREEAEFPPGNQT-GFSPSNFQQTGASSSQNLPGGTNSMKTGAHLGHVQQF-GGSS 305
A +++ F P QT G S+ G Q P + A +F GG
Sbjct: 176 YAHSQQHYMGFRPHMQTQGLQNSHQTPQGGPHGQQFPS-QQEYNSLAPKREGDEFHGGKK 234
Query: 306 VTLQQPN 312
QP+
Sbjct: 235 TGFSQPH 241
Score = 63 (27.2 bits), Expect = 5.3e-228, Sum P(3) = 5.3e-228
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 1055 YDRYERPL-DRKDR--RVSGFDVLP--ESQTS-SMVPAAPMSPGLQGGVLPATGPTVLLQ 1108
Y R P+ +R+DR RVSGFD+ P ES + M AA + + + G V+
Sbjct: 1014 YSRSPSPVYERRDRAPRVSGFDIKPPVESVVNLDMNAAAAIENVVPTSLSERQGNGVVES 1073
Query: 1109 LVDSSVTEPVL 1119
V++++ PV+
Sbjct: 1074 EVEAALVRPVV 1084
Score = 58 (25.5 bits), Expect = 5.6e-21, Sum P(3) = 5.6e-21
Identities = 77/342 (22%), Positives = 111/342 (32%)
Query: 200 QGHQYPHQQLQ---YTAYQQGIPPQGKQ--SSHQQTQV-----GAQGKQFGGQQDYNKAA 249
QGHQ H+Q + + + Q G Q +Q S H + Q+ Q Q GQQ + +
Sbjct: 75 QGHQAQHEQAKPVGHVSQQHGFQQQPQQFPSQHVRPQMMQQHPAQQMPQQSGQQFPQQQS 134
Query: 250 ITKREEAEFPPGNQTGFSPSNFQQTGASSSQNLPGGTNSMKTGAHLGHVQQFGGSSVTLQ 309
+ P QT + P+ QQ +Q+ + H QQ
Sbjct: 135 QSMVPHPHGHPSVQT-YQPTTQQQQQGMQNQH---SQMPQQLSHQYAHSQQHYMGFRPHM 190
Query: 310 QPNPMVQLQQTGTDMAHHQHGPRFE--NQMGPQMMHXXXXXXXXFGLGRGYEDNVHCRTG 367
Q + QT H Q P + N + P+ G + + N
Sbjct: 191 QTQGLQNSHQTPQGGPHGQQFPSQQEYNSLAPKREGDEFHGGKKTGFSQPHLPNSERSPS 250
Query: 368 NDYYFNGN----KDGPVMGPQQ----PKL-AALPM----GRNPQETRMGGAAPGQATGLN 414
+ +F N K + Q P+ AA+ G N ++G AP Q
Sbjct: 251 QNTHFEANAASQKTNANLAMAQKCNGPQANAAVTQFQQPGANLIHQQLGPRAPNQMD--- 307
Query: 415 AVAGHAMHGMYSHAGSFPNNAMMRPTFMGSPGVTDLSPAEVYRQRHEVSATLPRVASMHS 474
M SH F +N PG D R EV +H
Sbjct: 308 ----QTMLHQKSHVSPFQSNNTYENNLQSRPG-ND----SYVNMRMEVPVR--GAQPLHP 356
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF 516
A P I+ P D A+ +TG G T G+ PAF
Sbjct: 357 AAM--PKDIRISGGPPT--NAD-PAMGQTGHG-TYGHAGPAF 392
Score = 39 (18.8 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 1076 PESQTSSMVPAAPMSPGLQ 1094
P+ Q+ SMVP P +Q
Sbjct: 130 PQQQSQSMVPHPHGHPSVQ 148
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 1497 (532.0 bits), Expect = 2.4e-175, Sum P(3) = 2.4e-175
Identities = 284/371 (76%), Positives = 326/371 (87%)
Query: 474 SAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVL 533
SAGFS+PTPIQAQ+WPIA+QGRDIVAIAKTGSGKTLGYLIP F+ L+++ N+ R GPT+L
Sbjct: 175 SAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTIL 234
Query: 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDI 593
VL+PTRELATQIQ+EA KFGRSSR+SCTCLYGGAPKGPQLR+L++GADIVVATPGRLNDI
Sbjct: 235 VLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDI 294
Query: 594 LEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIAS 653
LEM++I Q+S LVLDEADRMLDMGFEPQIRKIV E+P RQTLMYTATWPK VRKIA+
Sbjct: 295 LEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAA 354
Query: 654 DLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKR 713
DLLVNP QVNIGNVDEL ANK+ITQH+EVV MEK+RRL+QILR+QE GS+VIIFCSTKR
Sbjct: 355 DLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKR 414
Query: 714 LCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVV 773
+CDQL R++ R FGA AIHGDKSQ ERD VLNQFRSG++P+LVATDVAARGLD+KDIR V
Sbjct: 415 MCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAV 474
Query: 774 INYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRD 833
+NYDFPNGVEDYVHRI A TFF +QDSK+A+DL+K+LEGANQ VPP++R+
Sbjct: 475 VNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIRE 534
Query: 834 MALRCGPGFGK 844
MA R G G K
Sbjct: 535 MATRGGGGMNK 545
Score = 193 (73.0 bits), Expect = 2.4e-175, Sum P(3) = 2.4e-175
Identities = 35/46 (76%), Positives = 38/46 (82%)
Query: 6 ATTASLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
AT A+ RYAP+D TLPKPWKGLID TG LY+WNPETNVTQYEK
Sbjct: 3 ATAAASVVRYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEK 48
Score = 51 (23.0 bits), Expect = 2.4e-175, Sum P(3) = 2.4e-175
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 435 AMMRPTFMGSPGVTDLSPAEVYRQRHEVSAT----LPRVASMHSAGF 477
A R S ++LSP E Y +RHE++ + P + S + GF
Sbjct: 120 ASTRVPLPSSAPASELSP-EAYSRRHEITVSGGQVPPPLMSFEATGF 165
Score = 42 (19.8 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 14/63 (22%), Positives = 23/63 (36%)
Query: 219 PPQGKQSSHQQTQVGAQG----KQFGGQQDYNKAAITKREEAEF---PPGNQTGFSPSNF 271
PP G + + G +G + + + R F PP + TG P +F
Sbjct: 551 PPSGGRGRGGDSGYGGRGSFASRDSRSSNGWGRERERSRSPERFNRAPPPSSTGSPPRSF 610
Query: 272 QQT 274
+T
Sbjct: 611 HET 613
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 1480 (526.0 bits), Expect = 2.0e-171, Sum P(2) = 2.0e-171
Identities = 282/380 (74%), Positives = 330/380 (86%)
Query: 466 LPRVASM-HSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN 524
LP M +SAGFS+P+PIQAQ+WPIA+Q RDIVAIAKTGSGKTLGYLIP F+ L+++HN
Sbjct: 237 LPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHN 296
Query: 525 NPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVV 584
+ R GPT+LVL+PTRELATQIQ EA KFG+SS++SC CLYGGAPKGPQL+E+++G DIVV
Sbjct: 297 DSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVV 356
Query: 585 ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
ATPGRLNDILEMK+I QVS LVLDEADRMLDMGFEPQIRKIVNE+P RQTLMYTATW
Sbjct: 357 ATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATW 416
Query: 645 PKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR 704
PK+VRKIA+DLLVNP QVNIGNVDEL ANK+ITQ +EV+ MEK RL+QILR+QE GS+
Sbjct: 417 PKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSK 476
Query: 705 VIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IIFCSTKR+CDQLAR++ R FGA AIHGDKSQ ERD VLNQFRSG++P+LVATDVAARG
Sbjct: 477 IIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARG 536
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+KDIRVV+NYDFPNGVEDYVHRI +A+TFF +QD+K+A+DL+K+LEGAN
Sbjct: 537 LDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGAN 596
Query: 825 QHVPPEVRDMALRCGPGFGK 844
Q VPP+VR+MA R G G K
Sbjct: 597 QKVPPQVREMATRGGGGMNK 616
Score = 208 (78.3 bits), Expect = 2.0e-171, Sum P(2) = 2.0e-171
Identities = 44/79 (55%), Positives = 51/79 (64%)
Query: 6 ATTASLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKXXXXXXXXXXXXXX 65
A TAS RYAP+DP LPKPWKGL+D TG LY+WNPETNVTQYE+
Sbjct: 2 AATAS-AIRYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASS---------- 50
Query: 66 XXSTPKLAPIPVAHSMQPN 84
+ PKLA IPV+ S+Q N
Sbjct: 51 --APPKLAAIPVSSSVQTN 67
Score = 47 (21.6 bits), Expect = 2.1e-154, Sum P(2) = 2.1e-154
Identities = 24/88 (27%), Positives = 38/88 (43%)
Query: 354 LGRGYEDNVHCRTGNDYYFNGNK-----DGPVMGPQQPKLAALPMGRNPQETRMGGAAPG 408
L + ++ V RTG Y++N + P PKLAA+P+ + Q + + G
Sbjct: 17 LPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAP-PKLAAIPVSSSVQTNQQSSS--G 73
Query: 409 QATGL-NAVAGHAMHGMYSHAGSFPNNA 435
+G + G G S +GS N A
Sbjct: 74 FNSGKEDDKYGRGSDGPKSDSGSRFNEA 101
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 1028 (366.9 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 203/388 (52%), Positives = 283/388 (72%)
Query: 464 ATLPRVA--SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR- 520
A PR + + GF +PT IQ+Q WP+AL GRD+V IA+TGSGKTL Y +PA + +
Sbjct: 130 AGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINA 189
Query: 521 QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGA 580
Q P +GP VL+LAPTRELA QIQ E +KFG+SSR+ TC+YGG PKGPQ+R+L +G
Sbjct: 190 QPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 249
Query: 581 DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMY 640
++ +ATPGRL D+LE K + +V+ LVLDEADRMLDMGFEPQIRKI+ ++ P RQTLM+
Sbjct: 250 EVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMW 309
Query: 641 TATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE----RRLQQIL 696
+ATWPK+VR +A+D L + +QVNIG++D L+AN ITQ VEVV + EK R +++++
Sbjct: 310 SATWPKEVRNMAADFLQDFIQVNIGSLD-LSANHRITQIVEVVSESEKRDRMIRHMEKVM 368
Query: 697 RAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPIL 755
++ ++++IF TKR+ D++ R + ++ + A++IHGDK Q ERDWVL+QF++GKSPI+
Sbjct: 369 DGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIM 428
Query: 756 VATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAAD 815
VATDVA+RG+D+++I V+NYD+PN EDY+HRI A TFF+ ++SK A D
Sbjct: 429 VATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARD 488
Query: 816 LVKVLEGANQHVPPEVRDMALRCGPGFG 843
L+ VL+ A Q + P + +MA R G G G
Sbjct: 489 LLGVLQEAKQEIDPRLAEMA-RYGGGGG 515
Score = 47 (21.6 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 445 PGVTDLSPAEV--YRQRHEVS---ATLPR-VASMHSAGFSSPT--PIQAQTWP 489
P VT+ S AEV +R+ H ++ + +P+ V + AGF ++AQ +P
Sbjct: 94 PDVTNRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFP 146
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 204/394 (51%), Positives = 283/394 (71%)
Query: 452 PAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGY 511
P ++++ + L +A + GF+ PTPIQAQ WP+AL+GRD++ IA+TGSGKTL Y
Sbjct: 163 PMKMFQDANFPDNILEAIAKL---GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 219
Query: 512 LIPAFI-LLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKG 570
L+PA + + Q +GP VL+LAPTRELA QIQ+E+ KFG S + TC+YGGAPKG
Sbjct: 220 LLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKG 279
Query: 571 PQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE 630
PQ+R+L +G +IV+ATPGRL D+LE + + +V+ LVLDEADRMLDMGFEPQIRKIV++
Sbjct: 280 PQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQ 339
Query: 631 MPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKER 690
+ P RQTL+++ATWP++V +A L +P + IG+ D L AN++I Q +E+VP EK
Sbjct: 340 IRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTD-LKANQSINQVIEIVPTPEKYN 398
Query: 691 RLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRS 749
RL +L+ GS+++IF TKR CDQ+ R + + + A+AIHGDK+Q ERD VL +F+S
Sbjct: 399 RLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKS 458
Query: 750 GKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQD 809
G+SPI+ ATDVAARGLD+KDI+ V+NYDFPN +EDY+HRI +A TFF+ +
Sbjct: 459 GRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDN 518
Query: 810 SKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
+K+A +LVK+L+ A Q VPP + + G G+G
Sbjct: 519 AKFARELVKILQEAGQVVPPTLSALVRSSGSGYG 552
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 198/368 (53%), Positives = 270/368 (73%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPRNGPTVL 533
AGF+ PTPIQ+Q WP+A++GRD++ IA+TGSGKTL YL+PA + + Q +GP VL
Sbjct: 117 AGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVL 176
Query: 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDI 593
VLAPTRELA QIQ EA+KFG SS++ TC+YGG PKGPQ+R+L +G +IV+ATPGRL D+
Sbjct: 177 VLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
Query: 594 LEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIAS 653
+E + +V+ LVLDEADRMLDMGF+PQIRKIV+ + P RQTL ++ATWPK+V +++
Sbjct: 237 MESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSK 296
Query: 654 DLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKR 713
L NP +V IG+ D L AN+AI Q V+V+ + +K +L ++L GSR+++F TK+
Sbjct: 297 KFLYNPYKVIIGSSD-LKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKK 355
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CDQ+ R + + + A++IHGDKSQ ERDWVL++FRSGKSPI+ ATDVAARGLD+KD++
Sbjct: 356 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKY 415
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYDFP +EDYVHRI A+TFF+ ++++A +L +L+ A Q V PE+
Sbjct: 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELA 475
Query: 833 DMALRCGP 840
M P
Sbjct: 476 SMGRSTAP 483
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
Identities = 200/377 (53%), Positives = 277/377 (73%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPR 527
++ + + GF PT IQ+Q WP+AL GRD+V IA+TGSGKTL Y +PA + + Q P
Sbjct: 152 LSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPG 211
Query: 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
+GP VL+LAPTRELA QIQ E +KFG+SSR+ TC+YGG PKGPQ+R+L +G ++ +ATP
Sbjct: 212 DGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATP 271
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL D+LE + + +V+ LVLDEADRMLDMGFEPQIRKI++++ P RQT M++ATWPK+
Sbjct: 272 GRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKE 331
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEK-ERRLQQILRAQE-RGSRV 705
VR++ASD L N +QVNIG++D L+AN ITQ VEV+ + EK +R ++ + + E RG++
Sbjct: 332 VRQLASDFLNNYIQVNIGSMD-LSANHRITQIVEVISEFEKRDRMIKHLEKIMENRGNKC 390
Query: 706 IIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
++F TKR+ D++ R + ++ + A++IHGDK Q ERDWVLN+F++GKSPI+VATDVA+RG
Sbjct: 391 LVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRG 450
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
+D++DI VINYD+PN EDYVHRI A TFF+ ++K A DLV +L A
Sbjct: 451 IDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAK 510
Query: 825 QHVPPEVRDMALRCGPG 841
Q + P + +M G G
Sbjct: 511 QQIDPRLAEMVRYSGGG 527
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
Identities = 206/388 (53%), Positives = 278/388 (71%)
Query: 460 HEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILL 519
H+ S + ++ F+ PTPIQ Q +P+AL GRD+V IA+TGSGKTL YL+PA + +
Sbjct: 93 HQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI 152
Query: 520 R-QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQ 578
Q + +GP LVLAPTRELA Q+Q A+ +G+ SRL TC+YGGAPKGPQ+R+L++
Sbjct: 153 NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER 212
Query: 579 GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTL 638
G +I +ATPGRL D LE K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTL
Sbjct: 213 GVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 272
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++ATWPK+VR++A D L + VQ+N+GN+ EL+AN I Q V+V + EK+ +L Q++
Sbjct: 273 MWSATWPKEVRQLAEDFLQDYVQINVGNL-ELSANHNILQIVDVCMESEKDHKLIQLMEE 331
Query: 699 --QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPIL 755
E+ ++ IIF TKR CD L R + R+ + A+ IHGDKSQ ERDWVLN+FRSGK+PIL
Sbjct: 332 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 391
Query: 756 VATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAAD 815
+ATDVA+RGLD++D++ VINYD+PN EDYVHRI A+TFF+ + K A +
Sbjct: 392 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 451
Query: 816 LVKVLEGANQHVPPEVRDMALRCGPGFG 843
L+KVLE ANQ + P++ + G G G
Sbjct: 452 LIKVLEEANQAINPKLMQLVDHRGGGGG 479
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 209/401 (52%), Positives = 281/401 (70%)
Query: 449 DLSPAEVYRQRHEVSATLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSG 506
D+ P V+ H A P+ + F+ PTPIQ Q +P+AL GRD+V IA+TGSG
Sbjct: 85 DVCPKPVFAFHH---ANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 507 KTLGYLIPAFILLR-QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
KTL YL+PA + + Q + +GP LVLAPTRELA Q+Q A+ +G+ SRL TC+YG
Sbjct: 142 KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYG 201
Query: 566 GAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIR 625
GAPKGPQ+R+L++G +I +ATPGRL D LE K + + + LVLDEADRMLDMGFEPQIR
Sbjct: 202 GAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIR 261
Query: 626 KIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685
KIV+++ P RQTLM++ATWPK+VR++A D L + Q+N+GN+ EL+AN I Q V+V +
Sbjct: 262 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVCME 320
Query: 686 MEKERRLQQILRA--QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDW 742
EK+ +L Q++ E+ ++ IIF TKR CD L R + R+ + A+ IHGDKSQ ERDW
Sbjct: 321 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDW 380
Query: 743 VLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAH 802
VLN+FRSGK+PIL+ATDVA+RGLD++D++ VINYD+PN EDYVHRI A+
Sbjct: 381 VLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAY 440
Query: 803 TFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
TFF+ + K A +L+KVLE ANQ + P++ + G G G
Sbjct: 441 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 481
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 209/401 (52%), Positives = 281/401 (70%)
Query: 449 DLSPAEVYRQRHEVSATLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSG 506
D+ P V+ H A P+ + F+ PTPIQ Q +P+AL GRD+V IA+TGSG
Sbjct: 85 DVCPKPVFAFHH---ANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 507 KTLGYLIPAFILLR-QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
KTL YL+PA + + Q + +GP LVLAPTRELA Q+Q A+ +G+ SRL TC+YG
Sbjct: 142 KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYG 201
Query: 566 GAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIR 625
GAPKGPQ+R+L++G +I +ATPGRL D LE K + + + LVLDEADRMLDMGFEPQIR
Sbjct: 202 GAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIR 261
Query: 626 KIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685
KIV+++ P RQTLM++ATWPK+VR++A D L + Q+N+GN+ EL+AN I Q V+V +
Sbjct: 262 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVCME 320
Query: 686 MEKERRLQQILRA--QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDW 742
EK+ +L Q++ E+ ++ IIF TKR CD L R + R+ + A+ IHGDKSQ ERDW
Sbjct: 321 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDW 380
Query: 743 VLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAH 802
VLN+FRSGK+PIL+ATDVA+RGLD++D++ VINYD+PN EDYVHRI A+
Sbjct: 381 VLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAY 440
Query: 803 TFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
TFF+ + K A +L+KVLE ANQ + P++ + G G G
Sbjct: 441 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 481
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 209/401 (52%), Positives = 281/401 (70%)
Query: 449 DLSPAEVYRQRHEVSATLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSG 506
D+ P V+ H A P+ + F+ PTPIQ Q +P+AL GRD+V IA+TGSG
Sbjct: 166 DVCPKPVFAFHH---ANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 222
Query: 507 KTLGYLIPAFILLR-QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
KTL YL+PA + + Q + +GP LVLAPTRELA Q+Q A+ +G+ SRL TC+YG
Sbjct: 223 KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYG 282
Query: 566 GAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIR 625
GAPKGPQ+R+L++G +I +ATPGRL D LE K + + + LVLDEADRMLDMGFEPQIR
Sbjct: 283 GAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIR 342
Query: 626 KIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685
KIV+++ P RQTLM++ATWPK+VR++A D L + Q+N+GN+ EL+AN I Q V+V +
Sbjct: 343 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVCME 401
Query: 686 MEKERRLQQILRA--QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDW 742
EK+ +L Q++ E+ ++ IIF TKR CD L R + R+ + A+ IHGDKSQ ERDW
Sbjct: 402 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDW 461
Query: 743 VLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAH 802
VLN+FRSGK+PIL+ATDVA+RGLD++D++ VINYD+PN EDYVHRI A+
Sbjct: 462 VLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAY 521
Query: 803 TFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
TFF+ + K A +L+KVLE ANQ + P++ + G G G
Sbjct: 522 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 562
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 209/401 (52%), Positives = 281/401 (70%)
Query: 449 DLSPAEVYRQRHEVSATLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSG 506
D+ P V+ H A P+ + F+ PTPIQ Q +P+AL GRD+V IA+TGSG
Sbjct: 164 DVCPKPVFAFHH---ANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 220
Query: 507 KTLGYLIPAFILLR-QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
KTL YL+PA + + Q + +GP LVLAPTRELA Q+Q A+ +G+ SRL TC+YG
Sbjct: 221 KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYG 280
Query: 566 GAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIR 625
GAPKGPQ+R+L++G +I +ATPGRL D LE K + + + LVLDEADRMLDMGFEPQIR
Sbjct: 281 GAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIR 340
Query: 626 KIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685
KIV+++ P RQTLM++ATWPK+VR++A D L + Q+N+GN+ EL+AN I Q V+V +
Sbjct: 341 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVCME 399
Query: 686 MEKERRLQQILRA--QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDW 742
EK+ +L Q++ E+ ++ IIF TKR CD L R + R+ + A+ IHGDKSQ ERDW
Sbjct: 400 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDW 459
Query: 743 VLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAH 802
VLN+FRSGK+PIL+ATDVA+RGLD++D++ VINYD+PN EDYVHRI A+
Sbjct: 460 VLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAY 519
Query: 803 TFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
TFF+ + K A +L+KVLE ANQ + P++ + G G G
Sbjct: 520 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 560
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 209/401 (52%), Positives = 281/401 (70%)
Query: 449 DLSPAEVYRQRHEVSATLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSG 506
D+ P V+ H A P+ + F+ PTPIQ Q +P+AL GRD+V IA+TGSG
Sbjct: 164 DVCPKPVFAFHH---ANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 220
Query: 507 KTLGYLIPAFILLR-QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
KTL YL+PA + + Q + +GP LVLAPTRELA Q+Q A+ +G+ SRL TC+YG
Sbjct: 221 KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYG 280
Query: 566 GAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIR 625
GAPKGPQ+R+L++G +I +ATPGRL D LE K + + + LVLDEADRMLDMGFEPQIR
Sbjct: 281 GAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIR 340
Query: 626 KIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685
KIV+++ P RQTLM++ATWPK+VR++A D L + Q+N+GN+ EL+AN I Q V+V +
Sbjct: 341 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVCME 399
Query: 686 MEKERRLQQILRA--QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDW 742
EK+ +L Q++ E+ ++ IIF TKR CD L R + R+ + A+ IHGDKSQ ERDW
Sbjct: 400 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDW 459
Query: 743 VLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAH 802
VLN+FRSGK+PIL+ATDVA+RGLD++D++ VINYD+PN EDYVHRI A+
Sbjct: 460 VLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAY 519
Query: 803 TFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
TFF+ + K A +L+KVLE ANQ + P++ + G G G
Sbjct: 520 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 560
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 209/401 (52%), Positives = 281/401 (70%)
Query: 449 DLSPAEVYRQRHEVSATLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSG 506
D+ P V+ H A P+ + F+ PTPIQ Q +P+AL GRD+V IA+TGSG
Sbjct: 166 DVCPKPVFAFHH---ANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 222
Query: 507 KTLGYLIPAFILLR-QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
KTL YL+PA + + Q + +GP LVLAPTRELA Q+Q A+ +G+ SRL TC+YG
Sbjct: 223 KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYG 282
Query: 566 GAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIR 625
GAPKGPQ+R+L++G +I +ATPGRL D LE K + + + LVLDEADRMLDMGFEPQIR
Sbjct: 283 GAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIR 342
Query: 626 KIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685
KIV+++ P RQTLM++ATWPK+VR++A D L + Q+N+GN+ EL+AN I Q V+V +
Sbjct: 343 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVCME 401
Query: 686 MEKERRLQQILRA--QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDW 742
EK+ +L Q++ E+ ++ IIF TKR CD L R + R+ + A+ IHGDKSQ ERDW
Sbjct: 402 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDW 461
Query: 743 VLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAH 802
VLN+FRSGK+PIL+ATDVA+RGLD++D++ VINYD+PN EDYVHRI A+
Sbjct: 462 VLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAY 521
Query: 803 TFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
TFF+ + K A +L+KVLE ANQ + P++ + G G G
Sbjct: 522 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 562
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 209/401 (52%), Positives = 281/401 (70%)
Query: 449 DLSPAEVYRQRHEVSATLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSG 506
D+ P V+ H A P+ + F+ PTPIQ Q +P+AL GRD+V IA+TGSG
Sbjct: 85 DVCPKPVFAFHH---ANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 507 KTLGYLIPAFILLR-QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
KTL YL+PA + + Q + +GP LVLAPTRELA Q+Q A+ +G+ SRL TC+YG
Sbjct: 142 KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYG 201
Query: 566 GAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIR 625
GAPKGPQ+R+L++G +I +ATPGRL D LE K + + + LVLDEADRMLDMGFEPQIR
Sbjct: 202 GAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIR 261
Query: 626 KIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685
KIV+++ P RQTLM++ATWPK+VR++A D L + Q+N+GN+ EL+AN I Q V+V +
Sbjct: 262 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVCME 320
Query: 686 MEKERRLQQILRA--QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDW 742
EK+ +L Q++ E+ ++ IIF TKR CD L R + R+ + A+ IHGDKSQ ERDW
Sbjct: 321 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDW 380
Query: 743 VLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAH 802
VLN+FRSGK+PIL+ATDVA+RGLD++D++ VINYD+PN EDYVHRI A+
Sbjct: 381 VLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAY 440
Query: 803 TFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
TFF+ + K A +L+KVLE ANQ + P++ + G G G
Sbjct: 441 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 481
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 960 (343.0 bits), Expect = 3.1e-104, Sum P(3) = 3.1e-104
Identities = 189/364 (51%), Positives = 263/364 (72%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPRNGPTVL 533
AGF +PTPIQ+Q WPIAL+GRDI+ +AKTGSGKTL +L+P+ + + Q +GP VL
Sbjct: 402 AGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVL 461
Query: 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDI 593
VLAPTRELA QIQ+E NKFG +S++S TC+YGGA K Q+ L +G +IV+ATPGRL DI
Sbjct: 462 VLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDI 521
Query: 594 LEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIAS 653
LE K + +V+ LVLDEADRMLDMGFEPQIRKI++++ P RQTLM++ATWPK+V+ +A
Sbjct: 522 LESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALAH 581
Query: 654 DLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKR 713
D L + +QV+IG+ E+ AN + Q VEV EK+ R+ L + R +VI+F T++
Sbjct: 582 DFLTDHIQVHIGST-EITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETRK 640
Query: 714 LCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
D L R + F +I IHG+KSQ ERD+VL+QF++G PI++ATDVA+RGLDIKDI+
Sbjct: 641 GVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKY 700
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
V+NYDFPN +E Y+HRI V+++ + +++ A +L+KVL A Q +P E+
Sbjct: 701 VVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLTEAKQKIPIELS 760
Query: 833 DMAL 836
++++
Sbjct: 761 NLSV 764
Score = 53 (23.7 bits), Expect = 3.1e-104, Sum P(3) = 3.1e-104
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 225 SSHQQTQVGAQ--GKQFGGQQDYNK--AAITKREEAEF--PPGNQTGFSPSNFQQTGASS 278
SS+ T G G + G +DYN+ + + ++ G+ +G S++ + +SS
Sbjct: 21 SSYSSTSRGGSSYGNRSGSDRDYNRDGGSYNRDSSRDYNSSSGSGSGNGSSSYNKYPSSS 80
Query: 279 SQNLPGGTNSMKTGAHLGH-VQQFGGSSVT 307
S + + S G G Q GSS T
Sbjct: 81 SSSSSSSSTS-SYGPSKGKDFQDSWGSSST 109
Score = 53 (23.7 bits), Expect = 3.1e-104, Sum P(3) = 3.1e-104
Identities = 24/97 (24%), Positives = 39/97 (40%)
Query: 417 AGHAMHGMYSHAGSFPNNAMMRPT--FMGSPGVTDLSPAEVYRQRHEVSATLPRVASMHS 474
+G + G Y+++GS +N +PT + S G T P Y +T P S S
Sbjct: 157 SGSSNGGSYNNSGSSNSNGYSKPTSNYSYSNGYT--GPTTNYSSYSNGYSTPPTSTSTSS 214
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGY 511
+ ++ T T P + + SG + GY
Sbjct: 215 SSTTTTTT----TTPSTSYNGGSTSYGYSTSGSSNGY 247
Score = 48 (22.0 bits), Expect = 1.0e-103, Sum P(3) = 1.0e-103
Identities = 20/95 (21%), Positives = 31/95 (32%)
Query: 201 GHQYPHQQLQYTAYQQGIPPQGKQSSHQQTQVGAQGKQFGGQQDYNKAAITKREEAEFPP 260
G Y ++ Y + + SS G G YNK + +
Sbjct: 30 GSSYGNRSGSDRDYNRDGGSYNRDSSRDYNSSSGSGSG-NGSSSYNKYPSSSSSSSS--S 86
Query: 261 GNQTGFSPS---NFQQTGASSSQNLPGGTNSMKTG 292
+ + + PS +FQ + SSS G N G
Sbjct: 87 SSTSSYGPSKGKDFQDSWGSSSTGTTNGYNGSSNG 121
Score = 38 (18.4 bits), Expect = 1.2e-102, Sum P(3) = 1.2e-102
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 257 EFPPGNQTGFSPSNFQQTGASSSQNLPGGTNSMKTGAHLGH 297
++P + + S S+ G S ++ S TG G+
Sbjct: 75 KYPSSSSSSSSSSSTSSYGPSKGKDFQDSWGSSSTGTTNGY 115
Score = 37 (18.1 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 19/81 (23%), Positives = 31/81 (38%)
Query: 219 PPQGK--QSSHQQTQVGAQGKQFGGQQDYNKAAI---TKREEAEFPPGNQTGFSPSNFQQ 273
P +GK Q S + G G YN ++ + + + N G++ S+
Sbjct: 94 PSKGKDFQDSWGSSSTGTTNGYNGSSNGYNSSSNGYNSSNSSSSYGASNN-GYNNSSGSS 152
Query: 274 TGASS------SQNLPGGTNS 288
+ SS S N G +NS
Sbjct: 153 SSGSSGSSNGGSYNNSGSSNS 173
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 1014 (362.0 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
Identities = 198/360 (55%), Positives = 263/360 (73%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPRNGPTVLV 534
GF PT IQ Q WP+AL GRD+V IA TGSGKTL Y +P + + Q P +GP VLV
Sbjct: 132 GFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLV 191
Query: 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL 594
LAPTRELA QIQ E +KFG SSR+ TC+YGG PK Q+R+L +G++IV+ATPGRL D+L
Sbjct: 192 LAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDML 251
Query: 595 EMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASD 654
E+ K + +V+ LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+V+++A+D
Sbjct: 252 EIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAAD 311
Query: 655 LLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR--AQERGSRVIIFCSTK 712
L +P+QV +G++ EL+A+ ITQ VEVV EK RL + L +Q+ + +IF STK
Sbjct: 312 YLNDPIQVQVGSL-ELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTK 370
Query: 713 RLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771
R+CD + + + + + A+AIHGDK Q ERDWVL +FR+G+SPI+VATDVAARG+D+K I
Sbjct: 371 RMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGIN 430
Query: 772 VVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEV 831
VINYD P +EDYVHRI A +FF+EQ+ A L+ ++ ANQ++PPE+
Sbjct: 431 YVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPEL 490
Score = 38 (18.4 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 223 KQSSHQQTQVGAQGKQFGGQQDYNK 247
+ S + + Q G FGG+ +YN+
Sbjct: 30 RNSYNDRPQGGNYRGGFGGRSNYNQ 54
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
Identities = 209/403 (51%), Positives = 281/403 (69%)
Query: 449 DLSPAEVYRQRHEVSATLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSG 506
D+ P V+ H A P+ + F+ PTPIQ Q +P+AL GRD+V IA+TGSG
Sbjct: 85 DVCPKPVFAFHH---ANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 507 KTLGYLIPAFILLR-QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
KTL YL+PA + + Q + +GP LVLAPTRELA Q+Q A+ +G+ SRL TC+YG
Sbjct: 142 KTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYG 201
Query: 566 GAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIR 625
GAPKGPQ+R+L++G +I +ATPGRL D LE K + + + LVLDEADRMLDMGFEPQIR
Sbjct: 202 GAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIR 261
Query: 626 KIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685
KIV+++ P RQTLM++ATWPK+VR++A D L + Q+N+GN+ EL+AN I Q V+V +
Sbjct: 262 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVCME 320
Query: 686 MEKERRLQQILRA--QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDW 742
EK+ +L Q++ E+ ++ IIF TKR CD L R + R+ + A+ IHGDKSQ ERDW
Sbjct: 321 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDW 380
Query: 743 VLNQFRSGKSPILVATDVAARGL--DIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXV 800
VLN+FRSGK+PIL+ATDVA+RGL D++D++ VINYD+PN EDYVHRI
Sbjct: 381 VLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGT 440
Query: 801 AHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
A+TFF+ + K A +L+KVLE ANQ + P++ + G G G
Sbjct: 441 AYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 483
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 1004 (358.5 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 196/372 (52%), Positives = 269/372 (72%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPRNGPTVLV 534
GF +PTPIQ Q WP+A+ GRD+V I+ TGSGKTL Y +PA + + Q +P +GP VLV
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLV 200
Query: 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL 594
LAPTRELA QIQ E KFG+SSR+ TC+YGG P+GPQ+R+L +G +I +ATPGRL D+L
Sbjct: 201 LAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDML 260
Query: 595 EMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASD 654
+ K + +V+ LVLDEADRMLDMGFEPQIRKIV+++ P RQT+M++ATWPK+V+++A D
Sbjct: 261 DSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARD 320
Query: 655 LLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTK 712
L + +QV +G++D LAA+ I Q VEVV +K RL + + ++R ++V+IF TK
Sbjct: 321 YLNDYIQVTVGSLD-LAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTK 379
Query: 713 RLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771
R+ D + R + ++ + A+AIHGDK+Q ERDWVLN+FR+GKSPI+VATDVA+RG+D+K I
Sbjct: 380 RVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGIT 439
Query: 772 VVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEV 831
V NYDFP EDYVHRI A+T+F+ ++K A +LV +L A Q + P++
Sbjct: 440 HVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKL 499
Query: 832 RDMALRCGPGFG 843
+MA G G
Sbjct: 500 EEMARYSSGGRG 511
Score = 38 (18.4 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 261 GNQTGFSPSNFQQTGASSSQNLPGGTNSMKTGAHLGHVQQFGG 303
G + G++ G ++ + GG GA G+ Q+ G
Sbjct: 14 GKEDGYNSRGRYGGGYRNNYSRGGGRGGFNDGASYGYDQRGQG 56
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 1002 (357.8 bits), Expect = 4.6e-103, Sum P(2) = 4.6e-103
Identities = 201/371 (54%), Positives = 271/371 (73%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPRNGPTVLVL 535
F PT IQAQ +P+AL GRD+V IA+TGSGKTL YL+PA + + Q + +GP LVL
Sbjct: 115 FKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 174
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A +G+SSR+ TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 175 APTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 234
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
+ K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 235 VGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 294
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L + VQ+NIG + EL+AN I Q V+V + EK+ +L Q++ E+ ++ IIF TK+
Sbjct: 295 LQDYVQINIGAL-ELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKK 353
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD+L R + R+ + A+ IHGDKSQ ERDWVL +FRSGK+PIL+ATDVA+RGLD++D++
Sbjct: 354 RCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKF 413
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDYVHRI A+TFF+ + + A DLV+VLE A Q + P++
Sbjct: 414 VINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLL 473
Query: 833 DMALRCGPGFG 843
+ + G G G
Sbjct: 474 QL-VDTGRGGG 483
Score = 39 (18.8 bits), Expect = 4.6e-103, Sum P(2) = 4.6e-103
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 250 ITKREEAEFPPGNQTGFSPSNFQQTGASSSQNLP 283
+T +A+FP NF++ A +Q P
Sbjct: 94 VTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFP 127
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 201/362 (55%), Positives = 265/362 (73%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPRNGPTVLV 534
GF PTPIQ Q WP+AL GRD++ IA TGSGKTL Y +P+ + + Q +GP VLV
Sbjct: 146 GFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLV 205
Query: 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL 594
LAPTRELA QIQ E +KFG+SSR+ TC+YGGAPKGPQ+R+L +G +I +ATPGRL D+L
Sbjct: 206 LAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDML 265
Query: 595 EMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASD 654
E K + +V+ LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+V+++ D
Sbjct: 266 EAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLTRD 325
Query: 655 LLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTK 712
L +P+QV IG++ ELAA+ ITQ VEV+ + K RL + L + E+ +++++F STK
Sbjct: 326 YLNDPIQVTIGSL-ELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFASTK 384
Query: 713 RLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
R CD++ + R+ G A+AIHGDK Q ERDWVL++FR GK+ I+VATDVAARG+D+K I
Sbjct: 385 RTCDEITTYL-RSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGI 443
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
VINYD P +EDYVHRI A +FF+E +SK DL K++ ANQ VPPE
Sbjct: 444 THVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQTVPPE 503
Query: 831 VR 832
++
Sbjct: 504 LQ 505
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
Identities = 195/363 (53%), Positives = 265/363 (73%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPRNGPTVLVL 535
++ PTPIQAQ WP+AL G+D+V IA+TGSGKTL YL+PA + + Q +GP LVL
Sbjct: 116 WTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVL 175
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++G++SR+ TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 176 APTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 235
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 236 AGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 295
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L +Q+N+G + +L+AN I Q V+V EKE +L ++L E+ ++ IIF TKR
Sbjct: 296 LKEYIQINVGAL-QLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKR 354
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD L R + R+ + A+ IHGDK+Q ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 355 RCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKF 414
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VIN+D+PN EDY+HRI A+TFF+ + K A DLV VL ANQ + P++
Sbjct: 415 VINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLI 474
Query: 833 DMA 835
MA
Sbjct: 475 QMA 477
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 192/369 (52%), Positives = 264/369 (71%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 233
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 234 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 293
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L + + +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 294 LKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD+L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 353 RCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 412
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K +DL+ VL ANQ + P++
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 473 QLVEDRGSG 481
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 192/369 (52%), Positives = 264/369 (71%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 171 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 230
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 231 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 290
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 291 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 350
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L + + +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 351 LKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 409
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD+L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 410 RCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 469
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K +DL+ VL ANQ + P++
Sbjct: 470 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 529
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 530 QLVEDRGSG 538
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 192/369 (52%), Positives = 264/369 (71%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 233
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 234 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 293
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L + + +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 294 LKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD+L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 353 RCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 412
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K +DL+ VL ANQ + P++
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 473 QLVEDRGSG 481
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 192/369 (52%), Positives = 264/369 (71%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 233
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 234 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 293
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L + + +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 294 LKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD+L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 353 RCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 412
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K +DL+ VL ANQ + P++
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 473 QLVEDRGSG 481
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 192/369 (52%), Positives = 264/369 (71%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 233
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 234 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 293
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L + + +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 294 LKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD+L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 353 RCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 412
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K +DL+ VL ANQ + P++
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 473 QLVEDRGSG 481
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 192/369 (52%), Positives = 264/369 (71%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 233
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 234 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 293
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L + + +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 294 LKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD+L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 353 RCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 412
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K +DL+ VL ANQ + P++
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 473 QLVEDRGSG 481
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 192/369 (52%), Positives = 264/369 (71%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 233
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 234 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 293
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L + + +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 294 LKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD+L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 353 RCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 412
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K +DL+ VL ANQ + P++
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 473 QLVEDRGSG 481
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 193/369 (52%), Positives = 261/369 (70%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 102 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 161
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 162 APTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 221
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 222 AGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 281
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L V +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 282 LKEYVHINIGAL-ELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKR 340
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 341 RCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 400
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K DL+ VL ANQ + P++
Sbjct: 401 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLL 460
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 461 QLIEDRGSG 469
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 193/369 (52%), Positives = 261/369 (70%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 110 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 169
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 170 APTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 229
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 230 AGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 289
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L V +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 290 LKEYVHINIGAL-ELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKR 348
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 349 RCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 408
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K DL+ VL ANQ + P++
Sbjct: 409 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLL 468
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 469 QLIEDRGSG 477
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 191/369 (51%), Positives = 263/369 (71%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G + +ATPGRL D LE
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLE 233
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 234 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 293
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L + + +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 294 LKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD+L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 353 RCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 412
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K +DL+ VL ANQ + P++
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 473 QLVEDRGSG 481
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 191/369 (51%), Positives = 263/369 (71%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 174 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 233
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 234 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 293
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRVIIFCSTKR 713
L + + +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++ I+F TKR
Sbjct: 294 LKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
CD+L R + R+ + A+ IHGDKSQ ER WVLN+F+ GK+PIL+ATDVA+RGLD++D++
Sbjct: 353 RCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKF 412
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
VINYD+PN EDY+HRI A+TFF+ + K +DL+ VL ANQ + P++
Sbjct: 413 VINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Query: 833 DMALRCGPG 841
+ G G
Sbjct: 473 QLVEDRGSG 481
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 196/379 (51%), Positives = 267/379 (70%)
Query: 464 ATLP-RVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQ 521
A LP ++ + F PT IQ+ +WPIA+ GRDI++IAKTGSGKTL +++PA + + +Q
Sbjct: 135 APLPGQIHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQ 194
Query: 522 LHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGAD 581
H GP VLVL PTRELA Q+Q+ + F S L TCL+GGA KGPQ R+L++G D
Sbjct: 195 AHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVD 254
Query: 582 IVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641
IVVATPGRL D L+ + + S LVLDEADRMLDMGFEPQI+KI+ ++ P RQTLM++
Sbjct: 255 IVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFS 314
Query: 642 ATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR--AQ 699
ATWPK+VR +ASD + +N+G++ ELAAN ITQ V+++ + K+ +L ++L
Sbjct: 315 ATWPKEVRALASDFQKDAAFLNVGSL-ELAANHNITQVVDILEEHAKQAKLMELLNHIMN 373
Query: 700 ERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVAT 758
++ + IIF TKR D+L R++ R+ + + IHGDK+QGERDWVL +F++GK+PI++AT
Sbjct: 374 QKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLAT 433
Query: 759 DVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVK 818
DVAARGLD+ DI+ VINYD+PN EDYVHRI A+TFF+ ++ A DL+K
Sbjct: 434 DVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLK 493
Query: 819 VLEGANQHVPPEVRDMALR 837
VL+ A Q VP +RDMA R
Sbjct: 494 VLDEAKQTVPQALRDMANR 512
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 943 (337.0 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 195/367 (53%), Positives = 254/367 (69%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLV 534
G+ +PT IQAQ WPIA+ G + V IAKTGSGKTLGY++PA + + R +GP LV
Sbjct: 300 GYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALV 359
Query: 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL 594
LAPTRELA QIQ A +FG SS + TC++GGAPKG Q+R+L +G +IV+ATPGRL D L
Sbjct: 360 LAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFL 419
Query: 595 EMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASD 654
+ + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+V+++A D
Sbjct: 420 SAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAED 479
Query: 655 LLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR----AQERGSRVIIFCS 710
L N +Q+NIG++ EL+AN I Q V+V + KE +L+ +L E ++IIF
Sbjct: 480 FLGNYIQINIGSL-ELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVE 538
Query: 711 TKRLCDQLARSIGRNFGAI--AIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK 768
TKR D L R I R+FG AIHGDKSQ ERD+VL +FRSGKS ILVATDVAARGLD+
Sbjct: 539 TKRRVDNLVRFI-RSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVD 597
Query: 769 DIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVP 828
I+ VIN+D+P EDY+HRI + FF++ ++K A LV VL ANQ +
Sbjct: 598 GIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEIN 657
Query: 829 PEVRDMA 835
P + ++A
Sbjct: 658 PALENLA 664
Score = 53 (23.7 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 31/136 (22%), Positives = 42/136 (30%)
Query: 332 RFENQMGPQMMHXXXXXXXXFGLGRGYEDNVHCRTGNDYYFNGNKDGPVMGPQQPKLAAL 391
+ E M P G RG +D G + + G G G + ++
Sbjct: 140 KIEGVMAPHDRDFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGIRNGRVEKR 199
Query: 392 PMGRNPQETRMGGAAPGQATGLNAVAGHAMHGMYSHAGSFPNNAMMRPTFMGS-PGVTDL 450
R GG G G G + F N A + F P V +
Sbjct: 200 RDDRGGGNRFGGGGGFGDRRG---GGGGGSQDLPMRPVDFSNLAPFKKNFYQEHPNVANR 256
Query: 451 SPAEVYRQRHEVSATL 466
SP EV R R E T+
Sbjct: 257 SPYEVQRYREEQEITV 272
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 945 (337.7 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 192/371 (51%), Positives = 262/371 (70%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR----NGPT 531
GF+ PT IQAQ WPIA+ GRD+V +A+TGSGKTL Y++PA + ++N PR +GP
Sbjct: 176 GFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVV---HINNQPRLERGDGPI 232
Query: 532 VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLN 591
LVLAPTRELA QIQ A +FG ++ + TC++GGAPKG Q R+L++G +IV+ATPGRL
Sbjct: 233 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLI 292
Query: 592 DILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
D LE + + LVLDEADRMLDMGFEPQIRKI+ ++ P RQ LM++ATWPK+VR++
Sbjct: 293 DFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQL 352
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR--AQERGSRVIIFC 709
A + L N +QVNIG++ L+AN I Q V+V + EK +L ++L + E ++ IIF
Sbjct: 353 AEEFLNNYIQVNIGSLS-LSANHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFV 411
Query: 710 STKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK 768
TK+ D++ R+I R + A AIHGDKSQ ERD+VL+ FR+G+ ILVATDVAARGLD+
Sbjct: 412 ETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVD 471
Query: 769 DIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVP 828
D++ VINYD+P+ EDYVHRI A+T F+ ++ A DL++VL ANQ +
Sbjct: 472 DVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTIN 531
Query: 829 PEVRDMALRCG 839
P++ +MA+ G
Sbjct: 532 PKLMNMAMNGG 542
Score = 42 (19.8 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 401 RMGGAAPGQATG 412
RMGG APG G
Sbjct: 30 RMGGGAPGGGPG 41
Score = 42 (19.8 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 260 PGNQTGFSPSNFQQTGASSSQNLP 283
P NQ GF N Q ++ +LP
Sbjct: 82 PRNQDGFGGQNGGQRSSNHGAHLP 105
Score = 37 (18.1 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 11/35 (31%), Positives = 12/35 (34%)
Query: 261 GNQTGFSPSNFQQTGASSSQNLPGGTNSMKTGAHL 295
G P + QN GG S GAHL
Sbjct: 72 GGGPSMGPGGPRNQDGFGGQN--GGQRSSNHGAHL 104
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 876 (313.4 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 184/396 (46%), Positives = 260/396 (65%)
Query: 464 ATLPR--VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ 521
++LP + M GF+ PT IQ+Q WPIAL GRD+V IA+TGSGKTL Y++PA +
Sbjct: 242 SSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV---H 298
Query: 522 LHNNPR----NGPTVLVLAPTRELATQIQDEANKFGRSSR--LSCTCLYGGAPKGPQLRE 575
+ N P GP LVLAPTRELA QIQ +G + + TC++GG+ K PQ R+
Sbjct: 299 IGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARD 358
Query: 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHR 635
LD+G ++++ATPGRL D LE + + + + LVLDEADRMLDMGFEPQIRKI+ ++ P R
Sbjct: 359 LDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 418
Query: 636 QTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQI 695
Q +M++ATWPK+V+ +A D L + +Q+NIG+++ L+AN I Q VE+ ++EK +RL +
Sbjct: 419 QVVMWSATWPKEVQALAGDFLNDYIQINIGSMN-LSANHNIRQIVEICTEIEKPQRLVCL 477
Query: 696 LR-------AQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQF 747
L + G+++I+F TK + + + I + A +IHGDK+Q ERD VL F
Sbjct: 478 LNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDF 537
Query: 748 RSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSE 807
R+GKS IL+ATDVA+RGLD++D++ VINYD+PN E+YVHRI A+TFF+
Sbjct: 538 RNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTP 597
Query: 808 QDSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
++K A +L+ VLE A Q + D+A R P G
Sbjct: 598 DNAKQARELISVLEEAGQTPSQALLDLA-RSMPSSG 632
Score = 49 (22.3 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 28/105 (26%), Positives = 38/105 (36%)
Query: 362 VHCRTGNDYYFNG---NKDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLNAVAG 418
V TG YY NG G G + + P G GGAA G A A
Sbjct: 13 VQQHTGGGYYGNGAAAGAGGSGNGAPRHERQYYPRGN------FGGAAGGAGINGAATAA 66
Query: 419 HAMHGMYSHAGSFPNNAMMRPTFMGSPGVTDLSPAEVYRQRHEVS 463
+MH + + MG+ G +P YRQ++ V+
Sbjct: 67 GSMH--FGQPYGVMTYGIQNGLGMGAAGSGGGNP---YRQQNGVA 106
Score = 39 (18.8 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 14/43 (32%), Positives = 15/43 (34%)
Query: 394 GRNPQETRMGGAAPGQATGLNAVAGHAMHGMYS-HAGSFPNNA 435
G NP + G A G G A G G Y G P A
Sbjct: 95 GGNPYRQQNGVAFAGNGLGGGAGGGSGGSGGYGGQRGKNPTYA 137
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 179/375 (47%), Positives = 255/375 (68%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPR 527
+ S+ + +PTPIQ Q WPIAL G+D++ A+TGSGKTL +++PAF+ +L Q +
Sbjct: 125 IKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYG 184
Query: 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
+GP VLVLAPTRELA QI+ E KF S++ TC YGG PK Q+ L QG I++A P
Sbjct: 185 DGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACP 244
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL D+LE + +V+ LVLDEAD+MLDMGFE QIRKIV+++ P RQTLM++ATWPK+
Sbjct: 245 GRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWPKE 304
Query: 648 VRKIASDLLVN-PVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGSRV 705
V+ +A DL P+QVN+G++ L A ++I Q + ++ + EK L+ +L R + R+
Sbjct: 305 VQALAKDLCKEQPIQVNVGSLT-LTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRI 363
Query: 706 IIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
I+F TK+ D + +++ + A+ IHGDK Q ER WVLN+F++GKSPI++ATDVA+RG
Sbjct: 364 IVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRG 423
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LDIK+++ VIN+DFPN +EDYVHRI + TF + + A DLVK+L +
Sbjct: 424 LDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESE 483
Query: 825 QHVPPEVRDMALRCG 839
Q VPP++ ++ G
Sbjct: 484 QPVPPQLEKISYSMG 498
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 179/375 (47%), Positives = 255/375 (68%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPR 527
+ S+ + +PTPIQ Q WPIAL G+D++ A+TGSGKTL +++PAF+ +L Q +
Sbjct: 125 IKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYG 184
Query: 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
+GP VLVLAPTRELA QI+ E KF S++ TC YGG PK Q+ L QG I++A P
Sbjct: 185 DGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACP 244
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL D+LE + +V+ LVLDEAD+MLDMGFE QIRKIV+++ P RQTLM++ATWPK+
Sbjct: 245 GRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWPKE 304
Query: 648 VRKIASDLLVN-PVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGSRV 705
V+ +A DL P+QVN+G++ L A ++I Q + ++ + EK L+ +L R + R+
Sbjct: 305 VQALAKDLCKEQPIQVNVGSLT-LTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRI 363
Query: 706 IIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
I+F TK+ D + +++ + A+ IHGDK Q ER WVLN+F++GKSPI++ATDVA+RG
Sbjct: 364 IVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRG 423
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LDIK+++ VIN+DFPN +EDYVHRI + TF + + A DLVK+L +
Sbjct: 424 LDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESE 483
Query: 825 QHVPPEVRDMALRCG 839
Q VPP++ ++ G
Sbjct: 484 QPVPPQLEKISYSMG 498
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 192/402 (47%), Positives = 262/402 (65%)
Query: 449 DLSPAEVYRQRHEVSATLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSG 506
D+ P V+ H A P+ + F+ PTPIQ Q +P+AL GRD+V IA+TGSG
Sbjct: 85 DVCPKPVFAFHH---ANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 507 KTLGYLIPAFILLR-QLHNNPRNGPTVLVLAPTRELATQIQDEAN-KFGRSSRLSCTCLY 564
KTL YL+PA + + Q + +GP V VL L + + + KF + S L C
Sbjct: 142 KTLAYLLPAIVHINHQPYLERGDGPIVSVLPFFSTLFSVYRGGTDFKF-KCSSLFWVCFL 200
Query: 565 GGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQI 624
G + KG +L L Q +I +ATPGR+ D LE K + + + LVLDEADRMLDMGFEPQI
Sbjct: 201 GQSLKGQRLEWLSQCVEICIATPGRI-DFLESGKTNLRRCTYLVLDEADRMLDMGFEPQI 259
Query: 625 RKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP 684
RKIV+++ P RQTLM++ATWPK+VR++A D L + Q+N+GN+ EL+AN I Q V+V
Sbjct: 260 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANHNILQIVDVCM 318
Query: 685 QMEKERRLQQILRA--QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERD 741
+ EK+ +L Q++ E+ ++ IIF TKR CD L R + R+ + A+ IHGDKSQ ERD
Sbjct: 319 ESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERD 378
Query: 742 WVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVA 801
WVLN+FRSGK+PIL+ATDVA+RGLD++D++ VINYD+PN EDYVHRI A
Sbjct: 379 WVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 438
Query: 802 HTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
+TFF+ + K A +L+KVLE ANQ + P++ + G G G
Sbjct: 439 YTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 480
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 165/317 (52%), Positives = 229/317 (72%)
Query: 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
+GP LVLAPTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATP
Sbjct: 87 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATP 146
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL D LE K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+
Sbjct: 147 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 206
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA--QERGSRV 705
VR++A D L + + +NIG + EL+AN I Q V+V +EK+ +L +++ E+ ++
Sbjct: 207 VRQLAEDFLKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 265
Query: 706 IIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
I+F TKR CD+L R + R+ + A+ IHGDKSQ ERDWVLN+F+ GK+PIL+ATDVA+RG
Sbjct: 266 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 325
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD++D++ VINYD+PN EDY+HRI A+TFF+ + K +DL+ VL AN
Sbjct: 326 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 385
Query: 825 QHVPPEVRDMALRCGPG 841
Q + P++ + G G
Sbjct: 386 QAINPKLLQLVEDRGSG 402
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 690 (248.0 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
Identities = 142/322 (44%), Positives = 208/322 (64%)
Query: 522 LHNNPRNGPTV-LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGA 580
++++ R T L+L PTREL Q+ DE F ++ + +YGG PK Q+ L +GA
Sbjct: 419 INSSERASDTYGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGA 478
Query: 581 DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMY 640
DI+VATPGRL D LE I+ + +V+DEADR+LDMGFE Q+RKI+ ++ ++Q L
Sbjct: 479 DIIVATPGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFL 538
Query: 641 TATWPKDVRKIASDLL-VNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ 699
TATWP+ VRK+A D +PV++ IG +EL ANK I Q+V + ++ +++L L+
Sbjct: 539 TATWPEQVRKLAYDFCSYDPVKIQIGK-NELTANKNIEQNVIISSSIDMKKKLLDWLKEN 597
Query: 700 ERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVAT 758
++++IFC TKR CD L + + + A++IHGDK Q ERD +LN +++ + ILVAT
Sbjct: 598 YENNKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVAT 657
Query: 759 DVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFS-----EQDSKYA 813
DVA+RGLDIK+I VVINYD PN +EDY+HRI + FFS Q K+A
Sbjct: 658 DVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFA 717
Query: 814 ADLVKVLEGANQHVPPEVRDMA 835
+L+K+L NQ VPP+++++A
Sbjct: 718 KELIKLLNKTNQTVPPQLKEIA 739
Score = 149 (57.5 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQ---LHNNPRNGPT 531
FS PT IQ TWPIAL G+D++ +A+TGSGKTL +++P F+ +L+ + NN N T
Sbjct: 307 FSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHILKHKEIIQNNNNNKQT 365
Score = 38 (18.4 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 262 NQTGFSPSNFQQTGASSSQNLPGGTNSMKTGAHLGHVQ 299
++T +S N G+ + +N+ + G+HL ++
Sbjct: 182 SKTNYSYDNDYNQGSRNKRNMSYPDRYEELGSHLKDIE 219
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 176/361 (48%), Positives = 235/361 (65%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536
F PTPIQA WP L G+D+V +A+TGSGKT + +PA L +++ + G VLV++
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL--MNDQKKRGIQVLVIS 189
Query: 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM 596
PTRELA+QI D + C C+YGG PK Q +L + + +VVATPGRL D+L+
Sbjct: 190 PTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQE 248
Query: 597 KKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH-RQTLMYTATWPKDVRKIASDL 655
+D QV+ LVLDEADRML+ GFE I+ I+ E RQTLM+TATWPK+VR++AS
Sbjct: 249 GSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTF 308
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERG----SRVIIFCST 711
+ NP++V+IGN D+L ANK ITQ VEVV KER+L ++L+ G +V+IF
Sbjct: 309 MNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALY 368
Query: 712 KRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
K+ ++ R++ N + AIHGD SQ +R LN+F+SGKS +L+ATDVAARGLDI ++
Sbjct: 369 KKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNV 428
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+ VIN FP VEDYVHRI AHT F+EQ+ A LV VL GANQ VP +
Sbjct: 429 KTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPED 488
Query: 831 V 831
+
Sbjct: 489 L 489
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 807 (289.1 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
Identities = 179/377 (47%), Positives = 243/377 (64%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP-------- 526
A F+ PTP+Q + PI +GRD++A A+TGSGKT G+L P F L + +P
Sbjct: 172 ASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSF 231
Query: 527 --RNG-PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIV 583
R G P+ LVLAPTRELATQI +EA KF S + +YGGAP G Q+RE+D+G D++
Sbjct: 232 YSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLL 291
Query: 584 VATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPP--HRQTLM 639
VATPGRLND+LE K+ + LVLDEADRMLDMGFEPQIR IV E MP +RQTLM
Sbjct: 292 VATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLM 351
Query: 640 YTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ 699
++AT+P D++ +A D L N + +++G V + N ITQ + V M+K+ L +L A+
Sbjct: 352 FSATFPVDIQHLARDFLDNYIFLSVGRVGSTSEN--ITQRILYVDDMDKKSALLDLLSAE 409
Query: 700 ERGSRVIIFCSTKRLCDQLARS-IGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVAT 758
+G +IF TKR+ DQL I +NF A AIHGD++Q ER+ L+ F++ + ILVAT
Sbjct: 410 HKGL-TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVAT 468
Query: 759 DVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVK 818
VAARGLDI ++ VINYD P+ ++DYVHRI VA +FF+ + L++
Sbjct: 469 AVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLME 528
Query: 819 VLEGANQHVPPEVRDMA 835
+L ANQ VP + D++
Sbjct: 529 ILNEANQEVPTFLSDLS 545
Score = 49 (22.3 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 261 GNQTGFSPSNFQQTGASSSQNLPGGTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQT 320
GN GF + ++ G +S+ GG+++ K+ + + G + + N ++ +
Sbjct: 65 GNNGGFFGFSKERNGGTSANYNRGGSSNYKSSGN----RWVNGKHIPGPK-NAKLEAELF 119
Query: 321 GT--DMAHHQHGPRFEN 335
G D +H G +F+N
Sbjct: 120 GVHDDPDYHSSGIKFDN 136
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 163/375 (43%), Positives = 238/375 (63%)
Query: 467 PRVA-SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILL--RQLH 523
P V ++ AGF PTPIQ+Q WPI LQG D++ +A+TG+GKTL YL+P FI + + +
Sbjct: 250 PEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVL 309
Query: 524 NNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIV 583
RNGP +LVL PTRELA Q+ E +++ L C+YGG + Q+++L +GADI+
Sbjct: 310 QRARNGPGMLVLTPTRELALQVDAECSEYSYRG-LKSVCIYGGGDRDGQIKDLSKGADII 368
Query: 584 VATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643
+ATPGRL+D+ + ++ LVLDEAD+MLDMGFEPQI KI+ ++ P RQT+M +AT
Sbjct: 369 IATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSAT 428
Query: 644 WPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS 703
WP VR++A L P+ V +G +D L A +TQ++ V + EK +Q + +
Sbjct: 429 WPYAVRRLAQSYLKEPMIVYVGTLD-LVAVSTVTQNIIVTTEDEKRSHIQAFIDSMSPKD 487
Query: 704 RVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
+VIIF S K + D L+ +G R ++HG++ Q +R+ L F++GK IL+ATD+A+
Sbjct: 488 KVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLAS 547
Query: 763 RGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEG 822
RGLD+ D+ V NYDFP +E+YVHR+ V+ T + D K A +L+ +LE
Sbjct: 548 RGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELINILER 607
Query: 823 ANQHVPPEVRDMALR 837
ANQ VP ++ MA R
Sbjct: 608 ANQSVPEDLVSMAER 622
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 164/378 (43%), Positives = 238/378 (62%)
Query: 467 PRVA-SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLH-- 523
P V ++ AGF PTPIQ+Q WPI LQG D++ +A+TG+GKTL YL+P FI +
Sbjct: 250 PEVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVV 309
Query: 524 ---NNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGA 580
RNGP +LVL PTRELA Q++ E +K+ L C+YGG + Q+++L +G
Sbjct: 310 FSLQRARNGPGMLVLTPTRELALQVEAECSKYSYKG-LKSVCVYGGGDRDGQIKDLLKGV 368
Query: 581 DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMY 640
DI++ATPGRLND+ + +S LVLDEAD+MLDMGFEPQI KI+ ++ P RQT+M
Sbjct: 369 DIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQTVMT 428
Query: 641 TATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQE 700
+ATWP VR++A L P+ V +G +D L A + Q++ V + EK +Q + +
Sbjct: 429 SATWPYAVRRLAQSYLKEPMIVYVGTLD-LVAVSTVKQNIIVTTEDEKRSHIQTFIESMS 487
Query: 701 RGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759
+VIIF S K + D L+ +G R+ ++HG++ QG+R+ L F++GK IL+ATD
Sbjct: 488 PKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATD 547
Query: 760 VAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKV 819
+A+RGLD+ D+ V NYDFP +E+YVHR+ V+ T + D K A +L+ +
Sbjct: 548 LASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELIHI 607
Query: 820 LEGANQHVPPEVRDMALR 837
LE ANQ +P ++ +MA R
Sbjct: 608 LERANQSIPEDLVEMAER 625
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 793 (284.2 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 153/368 (41%), Positives = 234/368 (63%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ--LHNNPRN 528
S+ AGF PTPIQ+Q WPI LQG D++ IA+TG+GKTL YL+P FI L + RN
Sbjct: 238 SIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRN 297
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
GP +LVL PTRELA Q+ E +K+ L C+YGG + Q++++ +G DI++ATPG
Sbjct: 298 GPGMLVLTPTRELALQVGAECSKYSYKG-LKSVCIYGGGNRKGQIQDIMKGVDIIIATPG 356
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
RLND+ ++ ++ LVLDEAD+MLD+GFE QI KI+ ++ P RQT+M +ATWP +
Sbjct: 357 RLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTI 416
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIF 708
R++A L P+ V +G +D L A + Q++ + + EK Q+ L++ +VI+F
Sbjct: 417 RQLAHSYLKEPMLVYVGTLD-LVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVF 475
Query: 709 CSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
S K + D L+ + + ++HGD+ Q +R+ L+ F++GK IL+ATD+A+RGLD+
Sbjct: 476 VSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDV 535
Query: 768 KDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHV 827
D+ V NY+FP +E+YVHR+ + T ++ D K A +L+++L+ ANQ +
Sbjct: 536 SDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRANQSI 595
Query: 828 PPEVRDMA 835
P ++ MA
Sbjct: 596 PEDLLSMA 603
Score = 40 (19.1 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 390 ALPMGRNPQETRMGGAAPGQATGLNAVAGH 419
A P R+P+ ++ G G+ G ++ + H
Sbjct: 10 AEPNSRDPRASQHGRDGRGRGRGWSSTSSH 39
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 162/367 (44%), Positives = 239/367 (65%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN---GPTV 532
GFS P+PIQ+Q WPI LQG D++ IA+TG+GKTL +L+P I + + PR G V
Sbjct: 302 GFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHT-EYQSTPRGTRGGANV 360
Query: 533 LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLND 592
LVLAPTRELA QI+ E K+ + C+YGG + Q+ +L++GA+I++ TPGRLND
Sbjct: 361 LVLAPTRELALQIEMEVKKYSFRG-MKAVCVYGGGNRNMQISDLERGAEIIICTPGRLND 419
Query: 593 ILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652
++ ID ++ LVLDEADRMLDMGFEPQIRK++ ++ P RQT+M +ATWP VR++A
Sbjct: 420 LIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWPPGVRRLA 479
Query: 653 SDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRLQQILRAQERGSRVIIFCST 711
+ NP+QV +G++D LAA ++ Q ++++ M+K + ++ ++IIFC
Sbjct: 480 QSYMKNPIQVCVGSLD-LAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGR 538
Query: 712 KRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
K D L+ + + F IHG++ Q +R+ + +SG ILVATDVA+RGLDI+DI
Sbjct: 539 KVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDI 598
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
VINYDFP+ +E+YVHR+ + +FF+ +D A +L+++L+ A Q VP E
Sbjct: 599 THVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVPDE 658
Query: 831 VRDMALR 837
+ +MA R
Sbjct: 659 LHNMARR 665
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 160/373 (42%), Positives = 239/373 (64%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP---- 526
S+ AGF PTPIQ+Q+WPI LQG D++ IA+TG+GKTL YL+P FI +H+ P
Sbjct: 215 SIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFI---HIHSQPVSRK 271
Query: 527 -RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
RNGP +LVL PTRELA Q++ E +K+ L C+YGG + Q++++ +G DI++A
Sbjct: 272 QRNGPGMLVLTPTRELALQVEAECSKYLYKG-LKSVCIYGGGNRKGQIQDVTKGVDIIIA 330
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRLND+ ++ ++ LVLDEAD+MLD+GFE QI KI+ ++ P RQT+M TA+WP
Sbjct: 331 TPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTTASWP 390
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
R++A L P+ V +G +D + N + Q++ V + EK +++ L++ +V
Sbjct: 391 DSTRRLAQSYLKQPMIVYVGTLDLVTVN-TVKQNIIVTTEEEKRSLVKEFLQSLSPKDKV 449
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
I+F S K + D L+ + + ++HGD+ Q +RD L FR+G+ IL+ATD+AARG
Sbjct: 450 IVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKILIATDLAARG 509
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+ D+ V NY+FP +E+YVHR+ + T ++ D K A +L+K+L+ AN
Sbjct: 510 LDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDDWKIADELIKILQRAN 569
Query: 825 QHVPPEVRDMALR 837
Q VPP +R MA R
Sbjct: 570 QIVPPSLRSMADR 582
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 788 (282.4 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 180/383 (46%), Positives = 239/383 (62%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR---NG-- 529
A F+ PTP+Q + PI GRD++A A+TGSGKT G+L P + +P+ G
Sbjct: 160 ARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSF 219
Query: 530 ------PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIV 583
PT +++APTRELATQI DEA KF S + +YGG+P G QLRE+++G D++
Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279
Query: 584 VATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPP--HRQTLM 639
VATPGRLND+LE KI V LVLDEADRMLDMGFEPQIR IV + M P RQTLM
Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLM 339
Query: 640 YTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ 699
++AT+P D++ +A D L + + +++G V + N ITQ V V +K+ L +L A
Sbjct: 340 FSATFPADIQHLARDFLSDYIFLSVGRVGSTSEN--ITQKVLYVENQDKKSALLDLLSAS 397
Query: 700 ERGSRVIIFCSTKRLCDQLARS-IGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVAT 758
G +IF TKR+ DQL I +NF A AIHGD++Q ER+ L FRSG + +LVAT
Sbjct: 398 TDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456
Query: 759 DVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVK 818
VAARGLDI ++ VINYD P+ V+DYVHRI +A FF+ ++S L +
Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHE 516
Query: 819 VLEGANQHVPPEVRDMALRCGPG 841
+L ANQ VP ++D A+ PG
Sbjct: 517 ILTEANQEVPSFLKD-AMMSAPG 538
Score = 38 (18.4 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 353 GLGRGYEDNVHCRTGNDYYFNGNKDG 378
G G + +N GN +F GN G
Sbjct: 52 GGGSFFSNNRRGGYGNGGFFGGNNGG 77
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 786 (281.7 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 163/365 (44%), Positives = 230/365 (63%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILL--RQLHNNPRNGPTVL 533
GF PTPIQ+Q WP+ L G D++ IA+TG+GKTL YL+P FI + + + + RNGP +L
Sbjct: 297 GFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDKRNGPGML 356
Query: 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDI 593
VL PTRELA QI+ E NK+ S C+YGG + Q++ + G DIV+ATPGRLND+
Sbjct: 357 VLTPTRELALQIEAECNKYSYKGFKSI-CIYGGGDRNAQIKVVTSGVDIVIATPGRLNDL 415
Query: 594 LEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIAS 653
+ I+ ++ LVLDEADRMLDMGFEPQI KI+ ++ P RQT+M +ATWP VR++A
Sbjct: 416 QMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSATWPPGVRRLAK 475
Query: 654 DLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKR 713
L +P+ V +G +D LAA + Q V V + EK+ + + E +V+IF K
Sbjct: 476 SYLKDPMMVYVGTLD-LAAVNTVQQTVLFVQEDEKKDYVFDFIHRMEPLDKVLIFVGKKL 534
Query: 714 LCDQLARSIGRNFGAI-AIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
D L+ + A+ ++HGD+ Q +R+ L F+ G+ ILVATD+A+RGLD+ DI
Sbjct: 535 KADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLASRGLDVHDITH 594
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
V NYDFP VE+YVHR+ + T + +D + AA+L+ +LE + Q VP E+
Sbjct: 595 VFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILERSGQDVPEELV 654
Query: 833 DMALR 837
MA R
Sbjct: 655 LMAER 659
Score = 40 (19.1 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 359 EDNVHCRTGNDYYFNGN 375
ED VH G Y NGN
Sbjct: 162 EDLVHENMGGSGYRNGN 178
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 163/375 (43%), Positives = 236/375 (62%)
Query: 467 PRVA-SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI--LLRQLH 523
P V ++ AGF PTPIQ+Q WPI LQG D++ +A+TG+GKTL YL+P FI +L+
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL 310
Query: 524 NNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIV 583
RN P +LVL PTRELA Q++ E K+ L C+YGG + Q+ EL +G DI+
Sbjct: 311 KGQRNRPGMLVLTPTRELALQVEGECCKYSYKG-LRSVCVYGGGNRDEQIEELKKGVDII 369
Query: 584 VATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643
+ATPGRLND+ ++ ++ LVLDEAD+MLDMGFEPQI KI+ ++ P RQT+M +AT
Sbjct: 370 IATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSAT 429
Query: 644 WPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS 703
WP V ++A L P+ V +G +D L A ++ Q++ V + EK +Q L++
Sbjct: 430 WPHSVHRLAQSYLKEPMIVYVGTLD-LVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTD 488
Query: 704 RVIIFCSTKRLCDQLARS-IGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
+VI+F S K + D L+ I N ++HGD+ Q +R+ L F++GK IL+ATD+A+
Sbjct: 489 KVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLAS 548
Query: 763 RGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEG 822
RGLD+ D+ V N+DFP +E+YVHRI V+ T + D + A++L+ +LE
Sbjct: 549 RGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILER 608
Query: 823 ANQHVPPEVRDMALR 837
ANQ +P E+ MA R
Sbjct: 609 ANQSIPEELVSMAER 623
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 171/366 (46%), Positives = 231/366 (63%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG------- 529
F P+PIQ+ TWP L GRD++ IAKTGSGKTL + IPA ++ L N + G
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA--IMHVLKKNKKIGGGSKKVN 191
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
PT LVL+PTRELA QI D + G L C+YGG+ KGPQ+ + G DIV+ TPGR
Sbjct: 192 PTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGR 251
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649
L D++E + VS +VLDEADRMLDMGFE +R I++ RQ +M++ATWP DV
Sbjct: 252 LRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVH 311
Query: 650 KIASDLL-VNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERG--SRVI 706
K+A + + NP++V IG+VD LAAN + Q +EV+ + +++RL +L + +RV+
Sbjct: 312 KLAQEFMDPNPIKVIIGSVD-LAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVL 370
Query: 707 IFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
+F K ++L R + R + A++IHG+K+Q ER L+ F+ G P+LVATDVAARGL
Sbjct: 371 VFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGL 430
Query: 766 DIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQ 825
DI D+ VVINY FP EDYVHRI VAHTFF+ + A +LV VL A Q
Sbjct: 431 DIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQ 490
Query: 826 HVPPEV 831
VP ++
Sbjct: 491 VVPADL 496
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 153/368 (41%), Positives = 234/368 (63%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ--LHNNPRN 528
S+ AGF PTPIQ+Q WPI LQG D++ IA+TG+GKTL YL+P FI L + RN
Sbjct: 229 SIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRN 288
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
GP +LVL PTRELA Q+ E +K+ L C+YGG + Q++++ +G DI++ATPG
Sbjct: 289 GPGMLVLTPTRELALQVGAECSKYSYKG-LKSVCIYGGGNRKGQIQDIMKGVDIIIATPG 347
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
RLND+ ++ ++ LVLDEAD+MLD+GFE QI KI+ ++ P RQT+M +ATWP +
Sbjct: 348 RLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTI 407
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIF 708
R++A L P+ V +G +D L A + Q++ + + EK Q+ L++ +VI+F
Sbjct: 408 RQLAHSYLKEPMLVYVGTLD-LVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVF 466
Query: 709 CSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
S K + D L+ + + ++HGD+ Q +R+ L+ F++GK IL+ATD+A+RGLD+
Sbjct: 467 VSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDV 526
Query: 768 KDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHV 827
D+ V NY+FP +E+YVHR+ + T ++ D K A +L+++L+ ANQ +
Sbjct: 527 SDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRANQSI 586
Query: 828 PPEVRDMA 835
P ++ MA
Sbjct: 587 PEDLLSMA 594
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 171/393 (43%), Positives = 248/393 (63%)
Query: 445 PGVTDLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTG 504
P + L P + Q SA +++ F PTPIQ+ +WP L G+D++ +A+TG
Sbjct: 146 PSSSSLRPILSFDQVQLTSAITSKLSK-----FDKPTPIQSVSWPFLLSGKDVIGVAETG 200
Query: 505 SGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLY 564
SGKT + +PA + N +VL ++PTRELA QI D + S ++C +Y
Sbjct: 201 SGKTFAFGVPAINNIITTGNTKTL--SVLCISPTRELALQIYDNLIELTADSGVNCVAVY 258
Query: 565 GGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQI 624
GG K Q+R++ + A++VVATPGRL D++ I+ G+V+ LVLDEADRML+ GFE I
Sbjct: 259 GGVSKDDQIRKI-KTANVVVATPGRLVDLINDGAINLGKVNYLVLDEADRMLEKGFEEDI 317
Query: 625 RKIV-NEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVV 683
+ I+ N RQTLM+TATWPK+VR++A++ + +PV+V +G+ DEL+ANK ITQ VEV+
Sbjct: 318 KTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVI 377
Query: 684 PQMEKERRLQQILR---AQERG-SRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQG 738
+ +KE++L Q+LR A E ++++IF K+ ++ + RN F AIHGD SQ
Sbjct: 378 NKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQ 437
Query: 739 ERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXX 798
+R L+ F+SG+S +L+ATDVAARGLDI +++VVIN FP +EDYVHRI
Sbjct: 438 QRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAK 497
Query: 799 XVAHTFFSEQDSKYAADLVKVLEGANQHVPPEV 831
AHT F+E + + L +L GANQ VP E+
Sbjct: 498 GTAHTLFTEDEKHLSGALCNILRGANQPVPEEL 530
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 171/386 (44%), Positives = 240/386 (62%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLH-NNPRNGPTV-- 532
+ PTP+Q PI L+GRD++A A+TGSGKT + P +++ H PR TV
Sbjct: 179 YVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYP 238
Query: 533 --LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
++L+PTRELA+QI DEA KF + + YGG P QLREL++G DI+VATPGRL
Sbjct: 239 LAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRL 298
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM--PPH--RQTLMYTATWPK 646
ND+LE ++ + L LDEADRMLDMGFEPQIRKIV +M PP RQTL+++AT+P+
Sbjct: 299 NDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPR 358
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ-ERGSR- 704
+++++A+D L N + + +G V ++ I Q VE V +K L +L AQ E G +
Sbjct: 359 EIQRLAADFLANYIFLAVGRVG--SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQG 416
Query: 705 ----VIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759
++F TKR D L + N F A +IHGD++Q ER+ L F+SG++PILVATD
Sbjct: 417 KQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATD 476
Query: 760 VAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKV 819
VAARGLDI + V+N+D PN ++DYVHRI +A FF++ ++ A L ++
Sbjct: 477 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAEL 536
Query: 820 LEGANQHVPPEVRDMALRCGPGFGKD 845
++ ANQ VP + A R G GK+
Sbjct: 537 MQEANQEVPEWLTRYASRSSFGGGKN 562
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 168/362 (46%), Positives = 226/362 (62%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536
+ PTPIQA TWP L GRD+V IA+TGSGKT+ + IPA L L +N ++ P VLV++
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDN-KSVPRVLVVS 243
Query: 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM 596
PTRELA Q + N + + L +YGGAPK Q R + A +++ TPGRL D++
Sbjct: 244 PTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAA-KNASVIIGTPGRLLDLIND 302
Query: 597 KKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP-P----HRQTLMYTATWPKDVRKI 651
ID QV LVLDEADRMLD GFE IR I++ P P RQT+ ++ATWP+ VR +
Sbjct: 303 GSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRAL 362
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRLQQILRAQ----ERGSRVI 706
A+ L +PV++ IG+ DELAA++ ITQ VE++ KER L +LR + +++
Sbjct: 363 AATFLKDPVKITIGS-DELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKIL 421
Query: 707 IFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
IF K+ ++ ++ R + + IHGD SQG R LN F+SGK P+LVATDVAARGLD
Sbjct: 422 IFVLYKKEAARVEGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLD 481
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQH 826
I +++VIN FP +EDYVHRI A TFF+ QD +A +LV VL A Q
Sbjct: 482 IPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQD 541
Query: 827 VP 828
+P
Sbjct: 542 IP 543
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 167/380 (43%), Positives = 235/380 (61%)
Query: 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLH-NNPRNG----PTVL 533
PTP+Q PI L RD++A A+TGSGKT + P +++ H PR P +
Sbjct: 174 PTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAV 233
Query: 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDI 593
+L+PTRELA QI DEA KF + + YGG P QLREL++G DI+VATPGRLND+
Sbjct: 234 ILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDL 293
Query: 594 LEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM--PPH--RQTLMYTATWPKDVR 649
LE ++ + L LDEADRMLDMGFEPQIRKIV +M PP RQT++++AT+P ++
Sbjct: 294 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQ 353
Query: 650 KIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ----ERGSRV 705
++A+D + N + + +G V ++ ITQ VE V + +K L +L AQ ++ S
Sbjct: 354 RLAADFMSNYIFLAVGRVG--SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLT 411
Query: 706 IIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
++F TKR D L + N F A +IHGD++Q ER+ L F++G++PILVATDVAARG
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARG 471
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LDI + V+N+D PN ++DYVHRI +A FF+E +++ A L ++++ AN
Sbjct: 472 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEAN 531
Query: 825 QHVPPEVRDMALRCGPGFGK 844
Q VP + A R G GK
Sbjct: 532 QEVPEWLTRYASRASFGGGK 551
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 765 (274.4 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
Identities = 157/384 (40%), Positives = 236/384 (61%)
Query: 460 HEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILL 519
H+ T + +M + P PIQ Q PI + GRD + +AKTGSGKTLG+++P +L
Sbjct: 532 HQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLP---ML 588
Query: 520 RQLHNNPR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575
R + + P +GP LV+APTREL QI + KF + + C +YGG+ Q+ E
Sbjct: 589 RHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISE 648
Query: 576 LDQGADIVVATPGRLNDIL--EMKKI-DFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632
L +G +IVV TPGR+ DIL KI + +V+ LV+DEADRM DMGFEPQI +I+ +
Sbjct: 649 LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIR 708
Query: 633 PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRL 692
P RQT++++AT+P+ V +A +L PV++ +G NK ITQ VEV P+ ++ RL
Sbjct: 709 PERQTVLFSATFPRQVETLARKVLNKPVEIQVGG--RSVVNKDITQLVEVRPESDRFLRL 766
Query: 693 QQILRAQERGSRVIIFCSTKRLCDQLARS-IGRNFGAIAIHGDKSQGERDWVLNQFRSGK 751
++L ++++F ++ CD L R I ++ +++HG K Q +R+ ++ F++
Sbjct: 767 LELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDV 826
Query: 752 SPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSK 811
+L+AT VAARGLD+K++ +V+N+D PN EDYVHR+ A TF SE D+K
Sbjct: 827 CNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAK 886
Query: 812 YAADLVKVLEGANQHVPPEVRDMA 835
YA DLVK LE + Q VP +++ +A
Sbjct: 887 YAPDLVKALELSEQPVPDDLKALA 910
Score = 45 (20.9 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 1086 AAPMSPGLQGGVLPATGPTVLLQLVDSSVTEPVLPGKGA 1124
AAP+S + L A G + VT P LP +GA
Sbjct: 1001 AAPVSAPVTANQLLANGGGLAAMPGVLPVTVPTLPSEGA 1039
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 162/372 (43%), Positives = 235/372 (63%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILL--RQLHNNP 526
+A++ GF PTPIQ+Q WPI LQG D++ IA+TG+GKTL YL+P FI L + + +
Sbjct: 252 MANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDK 311
Query: 527 RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
R GP +LVLAPTRELA Q++ E K+ S C+YGG + Q+ + +G DIV+AT
Sbjct: 312 RGGPGMLVLAPTRELALQVEAECLKYTYKGFKSI-CIYGGGDRKAQINVVTKGVDIVIAT 370
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
PGRLND+ I+ ++ L +EADRMLDMGFEPQI KI+ ++ P RQT+M +ATWP
Sbjct: 371 PGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATWPD 429
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVI 706
VR++A L NP+ V +G +D LAA + Q V V+ + EK+ ++ + + + + I
Sbjct: 430 GVRRLAKSYLRNPMIVYVGTLD-LAAVNTVEQKVIVINEEEKKAFMENFIDSMKPKDKAI 488
Query: 707 IFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
IF K D +A +G + ++HGD+ Q +R+ L+ F+ GK ILVATD+A+RGL
Sbjct: 489 IFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGL 548
Query: 766 DIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQ 825
D+ DI V N+DFP +E+YVHR+ A T +++D K A++L+ +L+ A Q
Sbjct: 549 DVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAKQ 608
Query: 826 HVPPEVRDMALR 837
VP E+ MA R
Sbjct: 609 VVPDELISMAER 620
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 150/368 (40%), Positives = 230/368 (62%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILL--RQLHNNPRN 528
S+ G PTPIQ+Q WPI LQG D++ +A+TG+GKTL YL+P FI L + + RN
Sbjct: 236 SIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 295
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
GP +LVL PTRELA ++ E +K+ L C+YGG + Q+ ++ +G DI++ATPG
Sbjct: 296 GPGMLVLTPTRELALHVEAECSKYSYKG-LKSICIYGGRNRNGQIEDISKGVDIIIATPG 354
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
RLND+ ++ ++ LV+DEAD+MLDM FEPQIRKI+ ++ P RQT+M +ATWP V
Sbjct: 355 RLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTV 414
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIF 708
R++A L +P+ V +GN++ +A N + Q++ V + EK Q+ + +VI+F
Sbjct: 415 RQLALSYLKDPMIVYVGNLNLVAVN-TVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMF 473
Query: 709 CSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
S K + D L+ + A ++HG+ Q +++ + F+SG IL+ TD+ +RGLD+
Sbjct: 474 VSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDL 533
Query: 768 KDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHV 827
D+ V NYDFP ++ YVHR+ + T +++DSK A +L+K+L+ ANQ V
Sbjct: 534 NDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDRANQSV 593
Query: 828 PPEVRDMA 835
P ++ MA
Sbjct: 594 PEDLVVMA 601
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 169/386 (43%), Positives = 237/386 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLH-NNPRN--G--P 530
+ PTP+Q PI GRD++A A+TGSGKT + P +++ H PR G P
Sbjct: 166 YVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYP 225
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
++L+PTRELA QI DEA KF + + YGG P Q+REL++G DI+VATPGRL
Sbjct: 226 LAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRL 285
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM---PPH-RQTLMYTATWPK 646
ND+LE ++ V L LDEADRMLDMGFEPQIRKIV +M PP RQT++++AT+P+
Sbjct: 286 NDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPR 345
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ-ERGSR- 704
+++++ASD L N + + +G V ++ I Q VE V +K L +L AQ E G++
Sbjct: 346 EIQRLASDFLSNYIFLAVGRVG--SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQG 403
Query: 705 ----VIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759
++F TK+ D L + N F A IHGD+SQ ER+ L F++G++PILVATD
Sbjct: 404 KQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATD 463
Query: 760 VAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKV 819
VAARGLDI + V+N+D PN ++DYVHRI +A FF++ ++ A L ++
Sbjct: 464 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAEL 523
Query: 820 LEGANQHVPPEVRDMALRCGPGFGKD 845
++ ANQ VP + A R G GK+
Sbjct: 524 MQEANQEVPDWLTRYASRASFGGGKN 549
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 748 (268.4 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 158/367 (43%), Positives = 232/367 (63%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q P+AL GRD++ IAKTGSGKT ++ P I ++ Q P +GP +++
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + +VS LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 393 KKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKR 713
L++P++V G++ E AN+ +TQ VE++ K L ++++ GS V++F + K
Sbjct: 453 LIDPIRVVQGDIGE--ANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKA 509
Query: 714 LCDQLARSI---GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
++LA ++ G N G + HGD Q ER+ V++ F+ P+LVATDVAARGLDI I
Sbjct: 510 NAEELASNLKQEGHNLGLL--HGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 567
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+ VINYD ++ + HRI VA+T + +DS +A DLV+ LEGANQHV E
Sbjct: 568 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKE 627
Query: 831 VRDMALR 837
+ D+A++
Sbjct: 628 LLDLAMQ 634
Score = 43 (20.2 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 252 KREEAEFPPGNQTGF-SPSNFQQTGASSSQNLP 283
K+EEA+ P + + F + S+ G S+ LP
Sbjct: 25 KKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLP 57
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 656 (236.0 bits), Expect = 2.1e-76, Sum P(3) = 2.1e-76
Identities = 142/311 (45%), Positives = 201/311 (64%)
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P LVLAPTRELA QI DEA KF SR+ +YGGA G Q+R+L++G ++VATPGR
Sbjct: 315 PISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 374
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTLMYTATWP 645
L D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP RQT+M++AT+P
Sbjct: 375 LVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMFSATFP 434
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K+++ +A D L + + +G V + N ITQ V V + +K L +L A + S
Sbjct: 435 KEIQILARDFLEEYIFLAVGRVGSTSEN--ITQKVVWVEENDKRSFLLDLLNATGKDSLT 492
Query: 706 IIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
++F TK+ D L + R + +IHGD+SQ +R+ L+QFRSG+ PI+VAT VAARG
Sbjct: 493 LVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVAARG 552
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LDI +++ VIN+D P+ +E+YVHRI +A +F+++++S DL+ +L A
Sbjct: 553 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITKDLLDILVEAK 612
Query: 825 QHVPPEVRDMA 835
Q VP + ++A
Sbjct: 613 QEVPSWLENLA 623
Score = 101 (40.6 bits), Expect = 2.1e-76, Sum P(3) = 2.1e-76
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 451 SPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLG 510
SP + H+V + ++ + ++ PTP+Q PI RD++A A+TGSGKT
Sbjct: 218 SPGHI-ESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAA 276
Query: 511 YLIPAFILLRQLHN 524
+L+P +L Q+++
Sbjct: 277 FLLP---VLSQIYS 287
Score = 44 (20.5 bits), Expect = 2.1e-76, Sum P(3) = 2.1e-76
Identities = 19/89 (21%), Positives = 32/89 (35%)
Query: 371 YFNGNKDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLNAVAGHAMHGMYSHAGS 430
+ NG D + G A P+ RN + R G N +A +G Y +
Sbjct: 61 FVNGYHDSRMNGTAN--FARGPL-RNDRGGRGGFRGNRNGASFNQPVHNAGYGTYENKDG 117
Query: 431 FPNNAMMRPTFMGSPGVTDLSPAEVYRQR 459
N+ + R + G +D + + R
Sbjct: 118 GWNSVVNRDAYASFGGRSDRGKSAFFNDR 146
Score = 43 (20.2 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 397 PQETRMGGAAPGQATGLNAVAGHAMHGMYSHAGSFPNNAMMRPTFMGSPGVTDLSPAEVY 456
P +++ PG+A + +G Y +P + ++ PT + + D + Y
Sbjct: 280 PVLSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAY 339
Query: 457 RQR 459
R R
Sbjct: 340 RSR 342
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 745 (267.3 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
Identities = 158/367 (43%), Positives = 231/367 (62%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q P+AL GRD++ IAKTGSGKT ++ P I ++ Q P +GP +++
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + +VS LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 393 KKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKR 713
L++P++V G++ E AN+ +TQ VE++ K L ++++ GS V++F + K
Sbjct: 453 LIDPIRVVQGDIGE--ANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKA 509
Query: 714 LCDQLARSI---GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
++LA ++ G N G + HGD Q ER+ V+ F+ P+LVATDVAARGLDI I
Sbjct: 510 NAEELANNLKQEGHNLGLL--HGDMDQSERNKVILDFKKKDIPVLVATDVAARGLDIPSI 567
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+ VINYD ++ + HRI VA+T + +DS +A DLV+ LEGANQHV E
Sbjct: 568 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKE 627
Query: 831 VRDMALR 837
+ D+A++
Sbjct: 628 LLDLAMQ 634
Score = 43 (20.2 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 252 KREEAEFPPGNQTGF-SPSNFQQTGASSSQNLP 283
K+EEA+ P + + F + S+ G S+ LP
Sbjct: 25 KKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLP 57
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 176/395 (44%), Positives = 242/395 (61%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP-- 526
++++ A + +PTP+Q + PI + GRD++A A+TGSGKT G+L P IL + N P
Sbjct: 198 ISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFP--ILSQAYQNGPAA 255
Query: 527 ------------RNG-PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573
R PT L+LAPTREL +QI DEA KF S + +YGGA G QL
Sbjct: 256 PPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQL 315
Query: 574 RELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVN--EM 631
R++++G D++VATPGRL D++E +I + L+LDEADRMLDMGFEPQIR+IV +M
Sbjct: 316 RQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDM 375
Query: 632 PP--HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE 689
P RQTLM++AT+P+D++ +A D L + V +++G V + N ITQ VE V +K
Sbjct: 376 PNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSEN--ITQKVEYVEDHDKR 433
Query: 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARS-IGRNFGAIAIHGDKSQGERDWVLNQFR 748
L IL +IF TKR+ D L+ I + F A AIHGD++Q ER+ L FR
Sbjct: 434 SVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFR 493
Query: 749 SGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ 808
SG+ PILVAT VAARGLDI ++ VINYD P ++DYVHRI +A FF+
Sbjct: 494 SGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG 553
Query: 809 DSKYAADLVKVLEGANQHVPPEVRDMALRCGPGFG 843
+ DL+ +L+ A+Q VP + +A R G G+G
Sbjct: 554 NRGVVRDLIDLLKEAHQEVPSFLESIA-REGSGYG 587
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 176/394 (44%), Positives = 241/394 (61%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR- 527
V ++ + F+ PTP+Q + PI GRD++A A+TGSGKT G+L P +L P
Sbjct: 198 VENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFP--VLSESYMKGPAP 255
Query: 528 ----NG--------PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575
NG PT+LV+APTREL +QI +E+ KF S + +YGGA G Q+R
Sbjct: 256 VPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRN 315
Query: 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPP 633
+D+G D++VATPGRL D+L+ K+ + LVLDEADRMLDMGFEPQIR IV E MP
Sbjct: 316 MDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPA 375
Query: 634 --HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERR 691
RQTLM++AT+P+D++ +A D L + V +++G V + N ITQ + V EK+
Sbjct: 376 VKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSEN--ITQKILYVEDDEKKSV 433
Query: 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSG 750
+ +L A E G I+F TKR+ D LA + + F A AIHGD+SQ ER+ L F++G
Sbjct: 434 ILDLLSANENGL-TIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNG 492
Query: 751 KSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDS 810
+PILVAT VAARGLDI ++ VINYD P+ ++DYVHRI +A FF+ +
Sbjct: 493 AAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNK 552
Query: 811 KYAADLVKVLEGANQHVPPEVRDMALRCGPGFGK 844
L+++L ANQ VP + +A R G FGK
Sbjct: 553 NVVKGLIELLSEANQEVPDFLTKIA-REG-AFGK 584
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 161/373 (43%), Positives = 243/373 (65%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPR 527
+ ++ A ++ PTPIQAQ P AL GRDI+ IAKTGSGKT ++ P + ++ Q P
Sbjct: 281 IKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPG 340
Query: 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
+GP L+LAPTREL+ QI +EA KFG+ L+ C YGG K Q + L+QGA+I+VATP
Sbjct: 341 DGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATP 400
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GR+ D+++MK + +V+ LVLDEADRM MGFEPQ+R I N + P RQ LM++AT+ K
Sbjct: 401 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKR 460
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRLQ-QILRAQERGSRV 705
+ ++A D+L +PV++ G+++E AN+ ITQ V V P ++K L +++ GS V
Sbjct: 461 IERLARDVLSDPVRIVQGDLNE--ANQDITQSVYVFPNPLQKWNWLLCHLVKFLSEGS-V 517
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF + K + ++ ++ + + + +HGD Q +R+ V+ QF+ + ILVATDVAARG
Sbjct: 518 LIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARG 577
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LDI IR V+NYD +E + HRI A+T +++D ++A LV+ LEGA+
Sbjct: 578 LDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVRNLEGAD 637
Query: 825 QHVPPEVRDMALR 837
Q VP ++ ++A++
Sbjct: 638 QLVPDDLMELAMK 650
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 730 (262.0 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 168/391 (42%), Positives = 232/391 (59%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF--ILLRQLHNNP 526
+ ++ A ++ PTP+Q PI L+ RD++A A+TGSGKT +L P ILL P
Sbjct: 259 LGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAP 318
Query: 527 ---RNG------PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELD 577
+ G P LVLAPTRELA QI DEANKF S +S +YGGA Q+ ELD
Sbjct: 319 PAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELD 378
Query: 578 QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPP-- 633
+G DI+VAT GRL D+L ++ ++ LVLDEADRMLDMGFEPQIR+I++E MP
Sbjct: 379 RGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCR 438
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
RQTLM++AT+PK ++ +A+D L N + + +G V + ITQ +E V + +K L
Sbjct: 439 DRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVV---GTTQNITQRIEYVVEEDKNSYLL 495
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKS 752
L + +IF TKR CD L + RNF IHGD +Q ER+ L FRS +
Sbjct: 496 DYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFAT 555
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
P LVATD+A+RGL I ++ +VIN+D P + YVHRI +A +FF+E++
Sbjct: 556 PFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPV 615
Query: 813 AADLVKVLEGANQHVPPEVRDMA--LRCGPG 841
A+L+K+++ +NQ +P M LR G
Sbjct: 616 GAELLKLMKASNQDIPDWFEKMVHNLRMSKG 646
Score = 49 (22.3 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 253 REEAEFPPGNQTGFSPSN-FQQTGASSSQNLPGGTNS 288
RE+ P GN +SP+N F + G GG+ S
Sbjct: 136 REQGP-PRGNSYSYSPNNSFSRGGNQGGYGNRGGSGS 171
Score = 38 (18.4 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 215 QQGIPPQGKQSSHQQTQVGAQGKQFGG 241
+QG PP+G S+ ++G GG
Sbjct: 137 EQG-PPRGNSYSYSPNNSFSRGGNQGG 162
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 160/373 (42%), Positives = 236/373 (63%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILL--RQLHNNP 526
+A++ GF PTPIQ+Q WPI LQG D++ IA+TG+GKTL YL+P FI L + + +
Sbjct: 65 MANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDK 124
Query: 527 RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
R GP +LVLAPTRELA Q++ E K+ S C+YGG + Q+ + +G DIV+AT
Sbjct: 125 RGGPGMLVLAPTRELALQVEAECLKYTYKGFKSI-CIYGGGDRKAQINVVTKGVDIVIAT 183
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
PGRLND+ I+ ++ LVLDEADRMLDMGFEPQI KI+ ++ P RQT+M +ATWP
Sbjct: 184 PGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATWPD 243
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVI 706
VR++A L NP+ V +G +D LA + + ++++ + + +Q + AQ + V+
Sbjct: 244 GVRRLAKSYLRNPMIVYVGTLD-LAVSGVVLKYLQFDKDIFTWKYMQ--VNAQSFCTDVV 300
Query: 707 I-FCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+ F + D +A +G + ++HGD+ Q +R+ L+ F+ GK ILVATD+A+RG
Sbjct: 301 VVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRG 360
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+ DI V N+DFP +E+YVHR+ A T +++D K A++L+ +L+ A
Sbjct: 361 LDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAK 420
Query: 825 QHVPPEVRDMALR 837
Q VP E+ MA R
Sbjct: 421 QVVPDELISMAER 433
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 169/361 (46%), Positives = 221/361 (61%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN-GPTVLV 534
GF+SPT IQ+ TWP+ GRD++ IA+TGSGKTL + +P + L ++ P +V
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVV 151
Query: 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL 594
++PTRELA QI D+ KF + C++GG K Q RE + A +VVATPGRL D+
Sbjct: 152 ISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQ-REALKSAAVVVATPGRLKDLQ 210
Query: 595 EMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP-PHRQTLMYTATWPKDVRKIAS 653
+D G+V LVLDEADRMLD GFE I+ I++ MP RQT+M+TATWP VR +AS
Sbjct: 211 NDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLAS 270
Query: 654 DLLVNPVQVNIGNVDELA---ANKAITQHVEVVPQMEKERRLQQILRAQERGS--RVIIF 708
+ +PV V IG D A AN I Q VEVV EKE+RL QIL +RG+ +V+ F
Sbjct: 271 TFMTSPVTVTIGG-DPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAF 329
Query: 709 CSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
C K+ ++ R + + F IHGD SQ ER L F+SG + +LVATDVAARGLDI
Sbjct: 330 CLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDI 389
Query: 768 KDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHV 827
+++V+N FP VEDYVHRI A T F+E D + L+ VL+ ANQ V
Sbjct: 390 PHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEV 449
Query: 828 P 828
P
Sbjct: 450 P 450
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 736 (264.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 171/392 (43%), Positives = 235/392 (59%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP-------- 526
A + PTP+Q PI + GRD++A A+TGSGKT +L+P + +L + P
Sbjct: 313 ARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQY 372
Query: 527 ---RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIV 583
+ P LVLAPTRELATQI +EA KF SR+ LYGG Q+RELD+G ++
Sbjct: 373 SRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLI 432
Query: 584 VATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPP--HRQTLM 639
VATPGRL D++ K+ + LVLDEADRMLDMGFEPQIR+IV + MPP RQTLM
Sbjct: 433 VATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLM 492
Query: 640 YTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ 699
++AT+PK ++++ASD L N + + +G V + N ITQ + V + +K L +L +
Sbjct: 493 FSATFPKQIQELASDFLSNYIFLAVGRVGSTSEN--ITQTILWVYEPDKRSYLLDLLSSI 550
Query: 700 ERG------SRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752
G S +IF TK+ D L + + N +IHGD++Q ER+ L FRSG
Sbjct: 551 RDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDC 610
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
PILVAT VAARGLDI ++ VIN+D P+ VE+YVHRI VA +FF+E++
Sbjct: 611 PILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNI 670
Query: 813 AADLVKVLEGANQHVPPEVRDMALRCGPGFGK 844
+DL+++L Q +P + DM+ G G K
Sbjct: 671 CSDLLELLIETKQEIPSFMEDMSSDRGHGGAK 702
Score = 40 (19.1 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 218 IPP--QGKQSSHQQTQVGAQGKQFGGQQDYNKAAITKREEAEFPPGNQTG 265
+PP +G ++ +QG+ G Q ++ + R+E P ++ G
Sbjct: 47 VPPHLRGGGGNNNAADAESQGQGQGQGQGFDSRSGNPRQETRDPQQSRGG 96
Score = 37 (18.1 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 395 RNPQETRMGGA-----APGQATGLNAVAGHAMHG 423
R+PQ++R GG G G N +G +G
Sbjct: 88 RDPQQSRGGGGEYRRGGGGGGRGFNRQSGDYGYG 121
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 158/366 (43%), Positives = 232/366 (63%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q P+AL GRD++ IAKTGSGKT ++ P I ++ Q P +GP +++
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + +VS LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 393 KKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRL-QQILRAQERGSRVIIFCSTKRL 714
L++P++V G++ E AN+ +TQ VE++ K L ++++ GS V++F + K
Sbjct: 453 LIDPIRVVQGDIGE--ANEDVTQIVEILHSGSKWNWLTRRLVEFTSSGS-VLLFVTKKAN 509
Query: 715 CDQLARSI---GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771
++LA ++ G N G + HGD Q ER+ V++ F+ P+LVATDVAARGLDI I+
Sbjct: 510 AEELANNLKQEGHNLGLL--HGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIK 567
Query: 772 VVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEV 831
VINYD ++ + HRI VA+T + +DS +A DLV+ LEGANQHV E+
Sbjct: 568 TVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKEL 627
Query: 832 RDMALR 837
D+A++
Sbjct: 628 LDLAMQ 633
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 161/375 (42%), Positives = 233/375 (62%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPR 527
++++ + PT IQ Q PI L GRD++ IAKTGSGKT +++P + ++ Q
Sbjct: 240 MSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRD 299
Query: 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
GP ++ APTRELA QI EA KF ++ L + +YGG K Q +EL G +IVVATP
Sbjct: 300 EGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATP 359
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL D+L+MK + + S LVLDEADRM D+GFEPQ+R IV ++ P RQTL+++AT P
Sbjct: 360 GRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWK 419
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRLQQILRAQERGSRVI 706
V K+A ++L +P++V +G V AN+ ITQ V V+P EK L + L V+
Sbjct: 420 VEKLAREILSDPIRVTVGEVG--MANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVL 477
Query: 707 IFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
+F S K D++ + N F A+HGDK Q R L +F+SG +L+ATDVAARGL
Sbjct: 478 VFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGL 537
Query: 766 DIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXX-VAHTFFSEQDSKYAADLVKVLEGAN 824
DIK ++ V+NYD ++ +VHRI VA+T +++++++A +LV L A
Sbjct: 538 DIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAG 597
Query: 825 QHVPPEVRDMALRCG 839
Q+VPPE+ D+A++ G
Sbjct: 598 QNVPPELTDLAMKDG 612
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 716 (257.1 bits), Expect = 7.4e-75, Sum P(3) = 7.4e-75
Identities = 148/363 (40%), Positives = 226/363 (62%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
+ PT IQAQT P + GRD++ IA+TGSGKTL +L+P F +L Q + P G L++
Sbjct: 529 YEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIM 588
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL- 594
+PTRELA QI E KF + L C+YGGA Q+ EL +GADIVV TPGR+ DIL
Sbjct: 589 SPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILC 648
Query: 595 -EMKKI-DFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652
++I + +V+ LVLDEADRM DMGF PQI IV+ + P RQT+M++AT+P V +A
Sbjct: 649 ANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVA 708
Query: 653 SDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTK 712
+L P+++ G ++++ I Q VEV P + RRL ++L +++IF + +
Sbjct: 709 KKILNKPLEIIAGGRSIVSSD--IEQFVEVRPTETRFRRLIELLSIWYHKGQILIFTNRQ 766
Query: 713 RLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771
D L R + + + +++HG K Q +RD ++ F++ IL+AT +A+RGLDIKD+
Sbjct: 767 ETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLN 826
Query: 772 VVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEV 831
+V+N+D P+ +EDYVHR+ A+TF + + ++++ ++K LE + VP E+
Sbjct: 827 LVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPDEL 886
Query: 832 RDM 834
R +
Sbjct: 887 RKL 889
Score = 54 (24.1 bits), Expect = 7.4e-75, Sum P(3) = 7.4e-75
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 193 NSQTAQPQGHQY--PHQQLQY--TAYQQGIPPQGKQSSHQQTQVGAQGKQFGGQQDYNKA 248
+SQ HQ P QQ Q ++Y PPQ + + QQ + A + +++A
Sbjct: 81 SSQNKYQNHHQQSPPQQQQQQQNSSYVPSQPPQQQTQTQQQPHIQAPPPAKPRKSRFDQA 140
Query: 249 AITKREEA-EFPP--GNQTGFSPSN-FQQTGASSSQNLP 283
T +A + PP NQ F +QQ Q P
Sbjct: 141 PETIPIQAPQQPPMISNQPIFKQQPMYQQPMYQQKQQQP 179
Score = 47 (21.6 bits), Expect = 4.0e-74, Sum P(3) = 4.0e-74
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 355 GRGYEDNVHCRTGNDYYFNGNKDGPVMGPQQPKLAALPMGRNPQE 399
G GY D+ + + N Y N ++ P QQ + ++ + PQ+
Sbjct: 71 GNGYRDDRNYSSQNKYQ-NHHQQSPPQQQQQQQNSSYVPSQPPQQ 114
Score = 39 (18.8 bits), Expect = 2.8e-73, Sum P(3) = 2.8e-73
Identities = 17/58 (29%), Positives = 21/58 (36%)
Query: 192 ENSQTAQPQGHQYPHQQLQYTAYQQGIPPQ-GKQSSHQQTQVGAQGKQFGGQQDYNKA 248
+ Q QP Q +Q Q +Q PP +Q Q Q Q F QQ A
Sbjct: 174 QKQQQPQPPIFQQQQKQQQPPIFQHHQPPPIYQQPPVYQQQQQQQQPVFQQQQQQRVA 231
Score = 37 (18.1 bits), Expect = 7.4e-75, Sum P(3) = 7.4e-75
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 1099 PATGPTVLLQLVDSSVTEP 1117
PAT T+++ VD ++ P
Sbjct: 977 PATTNTIVIPGVDGTIITP 995
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 160/374 (42%), Positives = 236/374 (63%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q P+A+ GRD++ IAKTGSGKT ++ P I ++ Q P +GP +++
Sbjct: 275 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 334
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 335 CPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 394
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + +V+ LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 395 KKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 454
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKR 713
L++P++V G++ E AN+ +TQ VE+ P K L ++++ GS V++F + K
Sbjct: 455 LIDPIRVVQGDIGE--ANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKA 511
Query: 714 LCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
++LA ++ + N G + HGD Q ER+ V+++F+ PILVATDVAARGLDI I
Sbjct: 512 NAEELANNLKQEDHNLGLL--HGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSI 569
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+ VINYD ++ + HRI VA+T + +DS +A DLV+ LEGANQHV E
Sbjct: 570 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKE 629
Query: 831 VRDMALRCGPGFGK 844
+ D+A++ P F K
Sbjct: 630 LLDLAMQ-NPWFRK 642
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 160/374 (42%), Positives = 236/374 (63%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q P+A+ GRD++ IAKTGSGKT ++ P I ++ Q P +GP +++
Sbjct: 268 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 327
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 328 CPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 387
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + +V+ LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 388 KKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 447
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKR 713
L++P++V G++ E AN+ +TQ VE+ P K L ++++ GS V++F + K
Sbjct: 448 LIDPIRVVQGDIGE--ANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKA 504
Query: 714 LCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
++LA ++ + N G + HGD Q ER+ V+++F+ PILVATDVAARGLDI I
Sbjct: 505 NAEELANNLKQEDHNLGLL--HGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSI 562
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+ VINYD ++ + HRI VA+T + +DS +A DLV+ LEGANQHV E
Sbjct: 563 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKE 622
Query: 831 VRDMALRCGPGFGK 844
+ D+A++ P F K
Sbjct: 623 LLDLAMQ-NPWFRK 635
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 160/374 (42%), Positives = 236/374 (63%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q P+A+ GRD++ IAKTGSGKT ++ P I ++ Q P +GP +++
Sbjct: 273 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 333 CPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + +V+ LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 393 KKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKR 713
L++P++V G++ E AN+ +TQ VE+ P K L ++++ GS V++F + K
Sbjct: 453 LIDPIRVVQGDIGE--ANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKA 509
Query: 714 LCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
++LA ++ + N G + HGD Q ER+ V+++F+ PILVATDVAARGLDI I
Sbjct: 510 NAEELANNLKQEDHNLGLL--HGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSI 567
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+ VINYD ++ + HRI VA+T + +DS +A DLV+ LEGANQHV E
Sbjct: 568 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKE 627
Query: 831 VRDMALRCGPGFGK 844
+ D+A++ P F K
Sbjct: 628 LLDLAMQ-NPWFRK 640
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 158/367 (43%), Positives = 232/367 (63%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q P+AL GRD++ IAKTGSGKT ++ P I ++ Q P +GP +++
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + +VS LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 393 KKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKR 713
L++P++V G++ E AN+ +TQ VE++ K L ++++ GS V++F + K
Sbjct: 453 LIDPIRVVQGDIGE--ANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKA 509
Query: 714 LCDQLARSI---GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
++LA ++ G N G + HGD Q ER+ V++ F+ P+LVATDVAARGLDI I
Sbjct: 510 NAEELANNLKQEGHNLGLL--HGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 567
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+ VINYD ++ + HRI VA+T + +DS +A DLV+ LEGANQHV E
Sbjct: 568 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKE 627
Query: 831 VRDMALR 837
+ D+A++
Sbjct: 628 LLDLAMQ 634
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 158/367 (43%), Positives = 232/367 (63%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q P+AL GRD++ IAKTGSGKT ++ P I ++ Q P +GP +++
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + +VS LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 393 KKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKR 713
L++P++V G++ E AN+ +TQ VE++ K L ++++ GS V++F + K
Sbjct: 453 LIDPIRVVQGDIGE--ANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKA 509
Query: 714 LCDQLARSI---GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
++LA ++ G N G + HGD Q ER+ V++ F+ P+LVATDVAARGLDI I
Sbjct: 510 NAEELANNLKQEGHNLGLL--HGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 567
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+ VINYD ++ + HRI VA+T + +DS +A DLV+ LEGANQHV E
Sbjct: 568 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKE 627
Query: 831 VRDMALR 837
+ D+A++
Sbjct: 628 LLDLAMQ 634
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 158/367 (43%), Positives = 232/367 (63%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q P+AL GRD++ IAKTGSGKT ++ P I ++ Q P +GP +++
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + +VS LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 393 KKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKR 713
L++P++V G++ E AN+ +TQ VE++ K L ++++ GS V++F + K
Sbjct: 453 LIDPIRVVQGDIGE--ANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKA 509
Query: 714 LCDQLARSI---GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
++LA ++ G N G + HGD Q ER+ V++ F+ P+LVATDVAARGLDI I
Sbjct: 510 NAEELANNLKQEGHNLGLL--HGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 567
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+ VINYD ++ + HRI VA+T + +DS +A DLV+ LEGANQHV E
Sbjct: 568 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKE 627
Query: 831 VRDMALR 837
+ D+A++
Sbjct: 628 LLDLAMQ 634
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 158/367 (43%), Positives = 232/367 (63%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q P+AL GRD++ IAKTGSGKT ++ P I ++ Q P +GP +++
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 333 CPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + +VS LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 393 KKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKR 713
L++P++V G++ E AN+ +TQ VE++ K L ++++ GS V++F + K
Sbjct: 453 LIDPIRVVQGDIGE--ANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKA 509
Query: 714 LCDQLARSI---GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
++LA ++ G N G + HGD Q ER+ V++ F+ P+LVATDVAARGLDI I
Sbjct: 510 NAEELANNLKQEGHNLGLL--HGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 567
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+ VINYD ++ + HRI VA+T + +DS +A DLV+ LEGANQHV E
Sbjct: 568 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKE 627
Query: 831 VRDMALR 837
+ D+A++
Sbjct: 628 LLDLAMQ 634
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 164/371 (44%), Positives = 234/371 (63%)
Query: 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVLAP 537
+PTPIQ Q PIAL GRD++AIAKTGSGKT ++ P+ ++ Q + +GP L LAP
Sbjct: 327 TPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAP 386
Query: 538 TRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK 597
TRELA QI E K+ + +L T LYGG K Q +EL G +I+VATPGRL D++++K
Sbjct: 387 TRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLK 446
Query: 598 KIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLV 657
+VS LVLDEAD+M D GF PQ+ IVN + P RQTL+++AT+ +V + A +L
Sbjct: 447 ATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILS 506
Query: 658 NPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKRLC 715
+P++++IG + +AN ITQ V+V+ +K L Q+ +GS V+IF STK
Sbjct: 507 DPIKISIGMIG--SANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGS-VLIFVSTKVAV 563
Query: 716 DQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI 774
+QL+ ++ + F +HGDK+Q ER + F+ GK IL+ATDVAARGLDI I+ V+
Sbjct: 564 EQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVV 623
Query: 775 NYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDM 834
NYD +E + HRI VA+T + +D ++ DL+K LE A+Q VPPE+ D+
Sbjct: 624 NYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLESASQFVPPELIDV 683
Query: 835 ALRCGPGFGKD 845
A+ P F ++
Sbjct: 684 AMN-NPHFKRE 693
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 159/372 (42%), Positives = 230/372 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
++ PTPIQ Q PIAL GRD + IAKTGSGKT ++ P + ++ Q P GP +++
Sbjct: 277 YTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELEPGEGPIAVIV 336
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTREL QI E +FG++ L +YGG Q + L +GA+IVV TPGRL D ++
Sbjct: 337 CPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 396
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K +V+ LV DEADRM DMGFE Q+R I + + P RQTL+++AT+ K + K+A D+
Sbjct: 397 KKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 456
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRL-QQILRAQERGSRVIIFCSTKR 713
LV+P++V G++ E AN+ ITQ VEV+ +K L ++++ GS V++F + K
Sbjct: 457 LVDPIRVVQGDIGE--ANEDITQIVEVLQSGQDKWGWLTRRLVEFTSAGS-VLVFVTKKA 513
Query: 714 LCDQLARS-IGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
C++LA + I + +HGD Q ER+ V+ F+ P+LVATDVAARGLDI IR
Sbjct: 514 NCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRT 573
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832
V+NYD ++ + HRI VA+T + +D+ +A DLV+ LEGANQ V ++
Sbjct: 574 VVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLL 633
Query: 833 DMALRCGPGFGK 844
D+A++ P F K
Sbjct: 634 DLAMQ-NPWFRK 644
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 653 (234.9 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 142/311 (45%), Positives = 200/311 (64%)
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P LVLAPTRELA QI DEA KF S + +YGGA G Q+R+L++G ++VATPGR
Sbjct: 299 PISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 358
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTLMYTATWP 645
L D++E KI + LVLDEADRMLDMGFEPQIR+IV + MPP RQT+M++AT+P
Sbjct: 359 LLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFP 418
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K+++ +A D L + + + +G V + N ITQ V V + +K L +L A + S
Sbjct: 419 KEIQILARDFLEDYIFLAVGRVGSTSEN--ITQKVVWVEENDKRSFLLDLLNATGKDSLT 476
Query: 706 IIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
++F TK+ D L + R + +IHGD+SQ +R+ L+QFRSG+ PILVAT VAARG
Sbjct: 477 LVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARG 536
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LDI +++ VIN+D P+ +E+YVHRI +A +FF++++ DL+ +L A
Sbjct: 537 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAK 596
Query: 825 QHVPPEVRDMA 835
Q VP + +A
Sbjct: 597 QEVPSWLESLA 607
Score = 105 (42.0 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
+ +++ + ++ PTP+Q PI RD++A A+TGSGKT +L+P +L Q++ +
Sbjct: 220 MGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLP---VLSQIYTD--- 273
Query: 529 GPTVLVLAPTRELATQIQDEANKFGR 554
GP + A A E K+GR
Sbjct: 274 GPGEALQA-----AKNSAQENGKYGR 294
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 167/378 (44%), Positives = 233/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N R
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 259
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 260 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 319
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 379
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V + +K L +L A
Sbjct: 380 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEESDKRSFLLDLLNA 437
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 438 TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 497
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E+++ DL+
Sbjct: 498 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITKDLL 557
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 558 DLLVEAKQEVPSWLENMA 575
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 167/378 (44%), Positives = 233/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N R
Sbjct: 178 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGR 237
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 238 YGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHL 297
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 298 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 357
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V +++K L +L A
Sbjct: 358 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEELDKRSFLLDLLNA 415
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 416 TGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 475
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 476 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 535
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 536 DLLVEAKQEVPSWLENMA 553
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 167/378 (44%), Positives = 233/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N R
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGR 259
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 260 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHL 319
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 379
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V +++K L +L A
Sbjct: 380 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEEIDKRSFLLDLLNA 437
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 438 TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 497
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 498 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 557
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 558 DLLVEAKQEVPSWLENMA 575
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 167/378 (44%), Positives = 233/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N R
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGR 259
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 260 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHL 319
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 379
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V +++K L +L A
Sbjct: 380 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEEIDKRSFLLDLLNA 437
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 438 TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 497
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 498 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 557
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 558 DLLVEAKQEVPSWLENMA 575
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 680 (244.4 bits), Expect = 7.7e-73, Sum P(3) = 7.7e-73
Identities = 164/409 (40%), Positives = 241/409 (58%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI L GRD++A A+TGSGKT
Sbjct: 262 DAPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKT 319
Query: 509 LGYLIPAFILLRQLHNN---PR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCT 561
+L+P IL +H+ R P +++APTREL QI EA KF + +
Sbjct: 320 AAFLLP--ILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAV 377
Query: 562 CLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFE 621
+YGG G +R++ QG +I+ ATPGRL DI+ +KI Q+ LVLDEADRMLDMGF
Sbjct: 378 VIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG 437
Query: 622 PQIRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAI 676
P+++K+++ MP RQTLM++AT+P++++++A++ L N + V +G V A + +
Sbjct: 438 PEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG--GACRDV 495
Query: 677 TQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDK 735
Q V V Q K +L +ILR R ++F TK+ D +A + + +IHGD+
Sbjct: 496 QQTVLQVGQFSKREKLVEILR-NIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDR 554
Query: 736 SQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXX 795
Q ER+ L FR GK P+LVAT VAARGLDI++++ VIN+D P+ +++YVHRI
Sbjct: 555 EQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRC 614
Query: 796 XXXXVAHTFFS-EQDSKYAADLVKVLEGANQHVPPEVRDMALRCG-PGF 842
A +FF E D+ A LVKVL A Q VP + ++A PGF
Sbjct: 615 GNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGF 663
Score = 50 (22.7 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 285 GTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
G NS K+ A G G VT P P + + AH+Q G F+
Sbjct: 203 GKNSWKSEAEGGESSDTQGPKVTYIPPPPP---EDEDSIFAHYQTGINFD 249
Score = 45 (20.9 bits), Expect = 7.7e-73, Sum P(3) = 7.7e-73
Identities = 18/78 (23%), Positives = 30/78 (38%)
Query: 376 KDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLN--AVAGHAMHGMYSHAGSFPN 433
+ G + G ++P L+ G Q G+ G GLN + G + S A +
Sbjct: 157 RTGGLFGSRRPVLSGTGNGDTSQSRSGSGSERGGYKGLNEEVITGSGKNSWKSEAEGGES 216
Query: 434 NAMMRP--TFMGSPGVTD 449
+ P T++ P D
Sbjct: 217 SDTQGPKVTYIPPPPPED 234
Score = 42 (19.8 bits), Expect = 7.7e-73, Sum P(3) = 7.7e-73
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 258 FPPGNQTGFSPSNFQQTGASSSQNLPGGTNS---MKTGAHLGHVQQFG 302
F +G + NF +T ASSS+ G + MK+G G + FG
Sbjct: 21 FEKDRYSGENGDNFNRTPASSSEMDDGPSRRDHFMKSGFASG--RNFG 66
Score = 37 (18.1 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 192 ENSQTAQPQGHQYPHQQLQYTAYQQGIPPQGKQS--SHQQTQV 232
+NS ++ +G + Q Y PP+ + S +H QT +
Sbjct: 204 KNSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGI 246
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 680 (244.4 bits), Expect = 7.7e-73, Sum P(3) = 7.7e-73
Identities = 164/409 (40%), Positives = 241/409 (58%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI L GRD++A A+TGSGKT
Sbjct: 282 DAPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKT 339
Query: 509 LGYLIPAFILLRQLHNN---PR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCT 561
+L+P IL +H+ R P +++APTREL QI EA KF + +
Sbjct: 340 AAFLLP--ILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAV 397
Query: 562 CLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFE 621
+YGG G +R++ QG +I+ ATPGRL DI+ +KI Q+ LVLDEADRMLDMGF
Sbjct: 398 VIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG 457
Query: 622 PQIRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAI 676
P+++K+++ MP RQTLM++AT+P++++++A++ L N + V +G V A + +
Sbjct: 458 PEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG--GACRDV 515
Query: 677 TQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDK 735
Q V V Q K +L +ILR R ++F TK+ D +A + + +IHGD+
Sbjct: 516 QQTVLQVGQFSKREKLVEILR-NIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDR 574
Query: 736 SQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXX 795
Q ER+ L FR GK P+LVAT VAARGLDI++++ VIN+D P+ +++YVHRI
Sbjct: 575 EQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRC 634
Query: 796 XXXXVAHTFFS-EQDSKYAADLVKVLEGANQHVPPEVRDMALRCG-PGF 842
A +FF E D+ A LVKVL A Q VP + ++A PGF
Sbjct: 635 GNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGF 683
Score = 50 (22.7 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 285 GTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
G NS K+ A G G VT P P + + AH+Q G F+
Sbjct: 223 GKNSWKSEAEGGESSDTQGPKVTYIPPPPP---EDEDSIFAHYQTGINFD 269
Score = 45 (20.9 bits), Expect = 7.7e-73, Sum P(3) = 7.7e-73
Identities = 18/78 (23%), Positives = 30/78 (38%)
Query: 376 KDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLN--AVAGHAMHGMYSHAGSFPN 433
+ G + G ++P L+ G Q G+ G GLN + G + S A +
Sbjct: 177 RTGGLFGSRRPVLSGTGNGDTSQSRSGSGSERGGYKGLNEEVITGSGKNSWKSEAEGGES 236
Query: 434 NAMMRP--TFMGSPGVTD 449
+ P T++ P D
Sbjct: 237 SDTQGPKVTYIPPPPPED 254
Score = 42 (19.8 bits), Expect = 7.7e-73, Sum P(3) = 7.7e-73
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 258 FPPGNQTGFSPSNFQQTGASSSQNLPGGTNS---MKTGAHLGHVQQFG 302
F +G + NF +T ASSS+ G + MK+G G + FG
Sbjct: 21 FEKDRYSGENGDNFNRTPASSSEMDDGPSRRDHFMKSGFASG--RNFG 66
Score = 37 (18.1 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 192 ENSQTAQPQGHQYPHQQLQYTAYQQGIPPQGKQS--SHQQTQV 232
+NS ++ +G + Q Y PP+ + S +H QT +
Sbjct: 224 KNSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGI 266
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 716 (257.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 165/380 (43%), Positives = 228/380 (60%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIP----AF------ILLRQ--- 521
+G++ PTP+Q + PI GRD++A A+TGSGKT G+L P AF + + Q
Sbjct: 187 SGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAG 246
Query: 522 LHNNPRNG-PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGA 580
+ PR PT L+LAPTREL QI +E+ KF S + +YGGA Q+R++DQG
Sbjct: 247 MGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGC 306
Query: 581 DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVN--EMPP--HRQ 636
D++ ATPGRL D+++ +I + LVLDEADRMLDMGFEPQIR IV +M RQ
Sbjct: 307 DLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQ 366
Query: 637 TLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL 696
TLM++AT+P+D++ +A D L + V +++G V + N ITQ V V EK L IL
Sbjct: 367 TLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSEN--ITQKVVHVEDSEKRSYLLDIL 424
Query: 697 RAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPIL 755
+IF TKR+ D L + NF A +IHGD++Q ER+ L FRSG++ I+
Sbjct: 425 HTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIM 484
Query: 756 VATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAAD 815
VAT VA+RGLDI ++ VINYD P ++DYVHRI A FF+ + A +
Sbjct: 485 VATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKE 544
Query: 816 LVKVLEGANQHVPPEVRDMA 835
L+++L+ ANQ P + MA
Sbjct: 545 LIELLQEANQECPSFLIAMA 564
Score = 38 (18.4 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 225 SSHQQTQVGAQGKQFGGQQDYNK 247
SS QT +GG+++YN+
Sbjct: 58 SSRSQTP-SEFSSNYGGRREYNR 79
Score = 38 (18.4 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 398 QETRMGGAAPGQATGLNAVAGHAMHGMYSHAGSFPNN 434
+E GG G N G G YS+ G + NN
Sbjct: 75 REYNRGGHYGGGEGRQNNYRG-GREGGYSNGGGYRNN 110
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 167/378 (44%), Positives = 232/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N R
Sbjct: 199 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 258
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 259 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 318
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 319 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 378
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V + +K L +L A
Sbjct: 379 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEESDKRSFLLDLLNA 436
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 437 TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 496
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 497 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 556
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 557 DLLVEAKQEVPSWLENMA 574
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 169/380 (44%), Positives = 233/380 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N R
Sbjct: 242 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 301
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 302 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 361
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 362 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 421
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V + +K L +L A
Sbjct: 422 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEESDKRSFLLDLLNA 479
Query: 699 QERG--SRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPIL 755
E G S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPIL
Sbjct: 480 TESGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPIL 539
Query: 756 VATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAAD 815
VAT VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ D
Sbjct: 540 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 599
Query: 816 LVKVLEGANQHVPPEVRDMA 835
L+ +L A Q VP + +MA
Sbjct: 600 LLDLLVEAKQEVPSWLENMA 619
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 167/378 (44%), Positives = 232/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N R
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 259
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 260 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 319
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 379
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V + +K L +L A
Sbjct: 380 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEESDKRSFLLDLLNA 437
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 438 TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 497
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 498 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 557
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 558 DLLVEAKQEVPSWLENMA 575
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 167/378 (44%), Positives = 232/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N R
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 259
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 260 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 319
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 379
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V + +K L +L A
Sbjct: 380 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEESDKRSFLLDLLNA 437
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 438 TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 497
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 498 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 557
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 558 DLLVEAKQEVPSWLENMA 575
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 166/378 (43%), Positives = 233/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N +
Sbjct: 199 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGK 258
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 259 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 318
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 319 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 378
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V + +K L +L A
Sbjct: 379 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEEADKRSFLLDLLNA 436
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S +++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 437 TGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 496
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 497 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 556
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 557 DLLVEAKQEVPSWLENMA 574
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 166/378 (43%), Positives = 233/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N +
Sbjct: 198 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGK 257
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 258 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 317
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 318 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 377
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V + +K L +L A
Sbjct: 378 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEEADKRSFLLDLLNA 435
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S +++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 436 TGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 495
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 496 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 555
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 556 DLLVEAKQEVPSWLENMA 573
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 161/389 (41%), Positives = 224/389 (57%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP 526
PR+ GF++PT IQ Q+WPI L G D+V +A TGSGKTL +L+PA + + L P
Sbjct: 120 PRMFQHIFQGFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRP 179
Query: 527 RNG--PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVV 584
G P VLV+APTRELA QI++ R + + C YGG K Q R L G DIV+
Sbjct: 180 SYGATPLVLVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVI 239
Query: 585 ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
TPGRLND+L +K V LVLDEADRMLDMGF PQI +++++P RQTLM++ATW
Sbjct: 240 GTPGRLNDLL--RKHHLSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATW 297
Query: 645 PKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKER-------RLQQILR 697
PK+V+ +AS L +P+++ +G+ EL + +TQH+ + + + + +IL
Sbjct: 298 PKEVKLLASKFLKDPIKITVGS-QELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILT 356
Query: 698 AQERGSRVIIFCSTKRLCDQLAR--SIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPIL 755
A + VI+FC+ K CD S +N +I +H K Q R+ L FR + IL
Sbjct: 357 ADPTNT-VIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRIL 415
Query: 756 VATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAAD 815
+ATDVAARGLDI ++ V NY P +EDYVHRI A ++ + Q D
Sbjct: 416 IATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQTPNLR-D 474
Query: 816 LVKVLEGANQHVPPEVRDMALRCGPGFGK 844
LVK+L+ NQ +P + A+ G +
Sbjct: 475 LVKILQRTNQKIPDFLEKFAVHSRQGISR 503
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 168/378 (44%), Positives = 230/378 (60%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI RD++A A+TGSGKT +L+P L+ + N R
Sbjct: 195 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGR 254
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 255 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 314
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 315 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 374
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V ++K L IL A
Sbjct: 375 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEDLDKRSFLLDILGA 432
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 433 TGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 492
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI ++R VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 493 TAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLL 552
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 553 DLLVEAKQEVPSWLENMA 570
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 168/378 (44%), Positives = 230/378 (60%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI RD++A A+TGSGKT +L+P L+ + N R
Sbjct: 198 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGR 257
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 258 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 317
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 318 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 377
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V ++K L IL A
Sbjct: 378 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEDLDKRSFLLDILGA 435
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 436 TGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 495
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI ++R VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 496 TAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLL 555
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 556 DLLVEAKQEVPSWLENMA 573
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 167/379 (44%), Positives = 233/379 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLH-NNP 526
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N
Sbjct: 176 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKATNG 235
Query: 527 RNG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGAD 581
R G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G
Sbjct: 236 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCH 295
Query: 582 IVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQT 637
++VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T
Sbjct: 296 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 355
Query: 638 LMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR 697
+M++AT+PK+++ +A D L + + +G V + N ITQ V V +++K L +L
Sbjct: 356 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEELDKRSFLLDLLN 413
Query: 698 AQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILV 756
A + S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILV
Sbjct: 414 ATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 473
Query: 757 ATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADL 816
AT VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL
Sbjct: 474 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 533
Query: 817 VKVLEGANQHVPPEVRDMA 835
+ +L A Q VP + +MA
Sbjct: 534 LDLLVEAKQEVPSWLENMA 552
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 725 (260.3 bits), Expect = 1.6e-71, P = 1.6e-71
Identities = 146/372 (39%), Positives = 229/372 (61%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPR 527
+ ++ G+ PTPIQ+Q P + GRD++ IAKTGSGKT+ +L+P F ++ Q
Sbjct: 383 LTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRALEEG 442
Query: 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
GP +++ PTRELA QI E KF ++ L C+YGG Q+ EL +GA+I+V TP
Sbjct: 443 EGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTP 502
Query: 588 GRLNDILEMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
GR+ D+L + +V+ +VLDEADRM DMGFEPQ+ +IV+ + P RQT+M++AT+
Sbjct: 503 GRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 562
Query: 645 PKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGS 703
P+ + +A +L P++V +G + ++ + QHV V+ + K +L ++L QE+GS
Sbjct: 563 PRAMEALARRILSKPIEVQVGGRSVVCSD--VEQHVIVIEEENKFLKLLELLGHYQEKGS 620
Query: 704 RVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
VIIF + D L + + R ++ +++HG Q +RD ++N F++G +LVAT VAA
Sbjct: 621 -VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 679
Query: 763 RGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEG 822
RGLD+K + +V+NY PN EDYVHR A+TF +E ++YA D++K LE
Sbjct: 680 RGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALEL 739
Query: 823 ANQHVPPEVRDM 834
+ +P ++ +
Sbjct: 740 SGNPIPADLEKL 751
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 163/378 (43%), Positives = 231/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P L+ + N R
Sbjct: 199 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGR 258
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA Q+R+L++G +
Sbjct: 259 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHL 318
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 319 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 378
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V +++K L +L A
Sbjct: 379 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEELDKRSFLLDLLNA 436
Query: 699 QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S ++F TK+ D L + + + +IHGD+SQ +R+ L+QFRSG+ PILVA
Sbjct: 437 TGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVA 496
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 497 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLL 556
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + MA
Sbjct: 557 DLLVEAKQEVPSWLESMA 574
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 164/378 (43%), Positives = 231/378 (61%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P L+ + + R
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESGR 259
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 260 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCHL 319
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+I+ + MPP R T+
Sbjct: 320 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPPKGVRHTM 379
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V + +K L +L A
Sbjct: 380 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEEADKRSFLLDLLNA 437
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 438 TGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 497
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P +E+YVHRI +A +FF+E++ + DL+
Sbjct: 498 TAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNINISKDLL 557
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 558 DLLVEAKQEVPSWLENMA 575
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 722 (259.2 bits), Expect = 3.8e-71, P = 3.8e-71
Identities = 149/364 (40%), Positives = 226/364 (62%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
+ PTPIQAQ P + GRD++ IAKTGSGKT+ +L+P F +L Q GP +++
Sbjct: 377 YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIM 436
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTRELA QI E KF +S L C+YGG Q+ EL +GA+I+V TPGR+ D+L
Sbjct: 437 TPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLG 496
Query: 596 MKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652
+ +V+ +V+DEADRM DMGFEPQ+ +IV+ + P RQT+M++AT+P+ + +A
Sbjct: 497 ANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALA 556
Query: 653 SDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGSRVIIFCST 711
+L PV+V +G + ++ + QHV V+ + +K +L +IL QE+GS VIIF
Sbjct: 557 RRILSKPVEVQVGGRSVVCSD--VEQHVIVIEEEKKFLKLLEILGHYQEKGS-VIIFVDK 613
Query: 712 KRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
+ D L + + + ++ +++HG Q +RD ++N F++G +LVAT VAARGLD+K +
Sbjct: 614 QEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQL 673
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
+V+NY PN EDYVHR A+TF +E ++Y+ D++K LE + VP E
Sbjct: 674 ILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAE 733
Query: 831 VRDM 834
+ +
Sbjct: 734 LEQL 737
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 721 (258.9 bits), Expect = 4.6e-71, P = 4.6e-71
Identities = 148/370 (40%), Positives = 227/370 (61%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG 529
S+ G+ PTPIQ Q P + GRD++ IAKTGSGKT+ +L+P F ++ Q G
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG 445
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P +++ PTRELA QI E KF ++ L C+YGG Q+ EL +GA+I+V TPGR
Sbjct: 446 PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGR 505
Query: 590 LNDILEMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
+ D+L + +V+ +VLDEADRM DMGFEPQ+ +IV+ + P RQT+M++AT+P+
Sbjct: 506 MIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR 565
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGSRV 705
+ +A +L P++V +G + ++ + Q V V+ + +K +L ++L QE GS V
Sbjct: 566 AMEALARRILSKPIEVQVGGRSVVCSD--VEQQVIVIEEEKKFLKLLELLGHYQESGS-V 622
Query: 706 IIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
IIF + D L + + R ++ +++HG Q +RD ++N F++G +LVAT VAARG
Sbjct: 623 IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARG 682
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+K + +V+NY PN EDYVHR A+TF +E ++YA D++K LE +
Sbjct: 683 LDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG 742
Query: 825 QHVPPEVRDM 834
VPP++ +
Sbjct: 743 TAVPPDLEKL 752
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 721 (258.9 bits), Expect = 4.7e-71, P = 4.7e-71
Identities = 148/370 (40%), Positives = 227/370 (61%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG 529
S+ G+ PTPIQ Q P + GRD++ IAKTGSGKT+ +L+P F ++ Q G
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG 445
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P +++ PTRELA QI E KF ++ L C+YGG Q+ EL +GA+I+V TPGR
Sbjct: 446 PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGR 505
Query: 590 LNDILEMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
+ D+L + +V+ +VLDEADRM DMGFEPQ+ +IV+ + P RQT+M++AT+P+
Sbjct: 506 MIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR 565
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGSRV 705
+ +A +L P++V +G + ++ + Q V V+ + +K +L ++L QE GS V
Sbjct: 566 AMEALARRILSKPIEVQVGGRSVVCSD--VEQQVIVIEEEKKFLKLLELLGHYQESGS-V 622
Query: 706 IIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
IIF + D L + + R ++ +++HG Q +RD ++N F++G +LVAT VAARG
Sbjct: 623 IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARG 682
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+K + +V+NY PN EDYVHR A+TF +E ++YA D++K LE +
Sbjct: 683 LDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG 742
Query: 825 QHVPPEVRDM 834
VPP++ +
Sbjct: 743 TAVPPDLEKL 752
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 721 (258.9 bits), Expect = 4.7e-71, P = 4.7e-71
Identities = 148/370 (40%), Positives = 227/370 (61%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG 529
S+ G+ PTPIQ Q P + GRD++ IAKTGSGKT+ +L+P F ++ Q G
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG 445
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P +++ PTRELA QI E KF ++ L C+YGG Q+ EL +GA+I+V TPGR
Sbjct: 446 PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGR 505
Query: 590 LNDILEMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
+ D+L + +V+ +VLDEADRM DMGFEPQ+ +IV+ + P RQT+M++AT+P+
Sbjct: 506 MIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR 565
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGSRV 705
+ +A +L P++V +G + ++ + Q V V+ + +K +L ++L QE GS V
Sbjct: 566 AMEALARRILSKPIEVQVGGRSVVCSD--VEQQVIVIEEEKKFLKLLELLGHYQESGS-V 622
Query: 706 IIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
IIF + D L + + R ++ +++HG Q +RD ++N F++G +LVAT VAARG
Sbjct: 623 IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARG 682
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+K + +V+NY PN EDYVHR A+TF +E ++YA D++K LE +
Sbjct: 683 LDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG 742
Query: 825 QHVPPEVRDM 834
VPP++ +
Sbjct: 743 TAVPPDLEKL 752
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 721 (258.9 bits), Expect = 4.7e-71, P = 4.7e-71
Identities = 148/370 (40%), Positives = 227/370 (61%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG 529
S+ G+ PTPIQ Q P + GRD++ IAKTGSGKT+ +L+P F ++ Q G
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG 445
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P +++ PTRELA QI E KF ++ L C+YGG Q+ EL +GA+I+V TPGR
Sbjct: 446 PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGR 505
Query: 590 LNDILEMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
+ D+L + +V+ +VLDEADRM DMGFEPQ+ +IV+ + P RQT+M++AT+P+
Sbjct: 506 MIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR 565
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGSRV 705
+ +A +L P++V +G + ++ + Q V V+ + +K +L ++L QE GS V
Sbjct: 566 AMEALARRILSKPIEVQVGGRSVVCSD--VEQQVIVIEEEKKFLKLLELLGHYQESGS-V 622
Query: 706 IIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
IIF + D L + + R ++ +++HG Q +RD ++N F++G +LVAT VAARG
Sbjct: 623 IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARG 682
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+K + +V+NY PN EDYVHR A+TF +E ++YA D++K LE +
Sbjct: 683 LDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG 742
Query: 825 QHVPPEVRDM 834
VPP++ +
Sbjct: 743 TAVPPDLEKL 752
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 721 (258.9 bits), Expect = 4.7e-71, P = 4.7e-71
Identities = 148/370 (40%), Positives = 227/370 (61%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG 529
S+ G+ PTPIQ Q P + GRD++ IAKTGSGKT+ +L+P F ++ Q G
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG 445
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P +++ PTRELA QI E KF ++ L C+YGG Q+ EL +GA+I+V TPGR
Sbjct: 446 PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGR 505
Query: 590 LNDILEMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
+ D+L + +V+ +VLDEADRM DMGFEPQ+ +IV+ + P RQT+M++AT+P+
Sbjct: 506 MIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR 565
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGSRV 705
+ +A +L P++V +G + ++ + Q V V+ + +K +L ++L QE GS V
Sbjct: 566 AMEALARRILSKPIEVQVGGRSVVCSD--VEQQVIVIEEEKKFLKLLELLGHYQESGS-V 622
Query: 706 IIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
IIF + D L + + R ++ +++HG Q +RD ++N F++G +LVAT VAARG
Sbjct: 623 IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARG 682
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+K + +V+NY PN EDYVHR A+TF +E ++YA D++K LE +
Sbjct: 683 LDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG 742
Query: 825 QHVPPEVRDM 834
VPP++ +
Sbjct: 743 TAVPPDLEKL 752
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 721 (258.9 bits), Expect = 4.7e-71, P = 4.7e-71
Identities = 148/370 (40%), Positives = 227/370 (61%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG 529
S+ G+ PTPIQ Q P + GRD++ IAKTGSGKT+ +L+P F ++ Q G
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG 445
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P +++ PTRELA QI E KF ++ L C+YGG Q+ EL +GA+I+V TPGR
Sbjct: 446 PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGR 505
Query: 590 LNDILEMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
+ D+L + +V+ +VLDEADRM DMGFEPQ+ +IV+ + P RQT+M++AT+P+
Sbjct: 506 MIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR 565
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGSRV 705
+ +A +L P++V +G + ++ + Q V V+ + +K +L ++L QE GS V
Sbjct: 566 AMEALARRILSKPIEVQVGGRSVVCSD--VEQQVIVIEEEKKFLKLLELLGHYQESGS-V 622
Query: 706 IIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
IIF + D L + + R ++ +++HG Q +RD ++N F++G +LVAT VAARG
Sbjct: 623 IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARG 682
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+K + +V+NY PN EDYVHR A+TF +E ++YA D++K LE +
Sbjct: 683 LDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG 742
Query: 825 QHVPPEVRDM 834
VPP++ +
Sbjct: 743 TAVPPDLEKL 752
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 721 (258.9 bits), Expect = 4.7e-71, P = 4.7e-71
Identities = 148/370 (40%), Positives = 227/370 (61%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG 529
S+ G+ PTPIQ Q P + GRD++ IAKTGSGKT+ +L+P F ++ Q G
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG 445
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P +++ PTRELA QI E KF ++ L C+YGG Q+ EL +GA+I+V TPGR
Sbjct: 446 PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGR 505
Query: 590 LNDILEMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
+ D+L + +V+ +VLDEADRM DMGFEPQ+ +IV+ + P RQT+M++AT+P+
Sbjct: 506 MIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPR 565
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-RAQERGSRV 705
+ +A +L P++V +G + ++ + Q V V+ + +K +L ++L QE GS V
Sbjct: 566 AMEALARRILSKPIEVQVGGRSVVCSD--VEQQVIVIEEEKKFLKLLELLGHYQESGS-V 622
Query: 706 IIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
IIF + D L + + R ++ +++HG Q +RD ++N F++G +LVAT VAARG
Sbjct: 623 IIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARG 682
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+K + +V+NY PN EDYVHR A+TF +E ++YA D++K LE +
Sbjct: 683 LDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG 742
Query: 825 QHVPPEVRDM 834
VPP++ +
Sbjct: 743 TAVPPDLEKL 752
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 166/381 (43%), Positives = 232/381 (60%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P L+ + N R
Sbjct: 201 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGR 260
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 261 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 320
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 321 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 380
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V + +K L +L A
Sbjct: 381 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEESDKRSFLLDLLNA 438
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 439 TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 498
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXV---AHTFFSEQDSKYAA 814
T VAARGLDI +++ VIN+D P+ +E+YVHRI + A +FF+E++
Sbjct: 499 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLIGLATSFFNERNINITK 558
Query: 815 DLVKVLEGANQHVPPEVRDMA 835
DL+ +L A Q VP + +MA
Sbjct: 559 DLLDLLVEAKQEVPSWLENMA 579
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 163/378 (43%), Positives = 230/378 (60%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSG T +L+P L+ + N R
Sbjct: 193 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILSQIYTDGPGEALKAMKENGR 252
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA Q+R+L++G +
Sbjct: 253 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHL 312
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 313 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 372
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V +++K L +L A
Sbjct: 373 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEELDKRSFLLDLLNA 430
Query: 699 QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
R S ++F TK+ D L + + + +IHGD+SQ +R+ L+QFRSG+ PILVA
Sbjct: 431 TGRDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVA 490
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 491 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLL 550
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + MA
Sbjct: 551 DLLVEAKQEVPSWLESMA 568
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 719 (258.2 bits), Expect = 2.8e-70, P = 2.8e-70
Identities = 152/371 (40%), Positives = 226/371 (60%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILL---RQLHNNPRNGPTV 532
GF+S T IQAQ P + GRD++ +AKTGSGKT+ +LIP F + R L N GP
Sbjct: 560 GFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRPLEN--MEGPIG 617
Query: 533 LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLND 592
L++ PTRELATQI + F ++ L C YGGAP Q+ EL +GA+I+V TPGR+ D
Sbjct: 618 LIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMID 677
Query: 593 ILEM---KKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649
+L + + +V+ +VLDEADRM DMGFEPQ+ KI++ + P RQT++++AT+P+++
Sbjct: 678 LLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATFPRNME 737
Query: 650 KIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL-----RAQERGSR 704
+A L P+++ +G +A ITQ VEV + +K RL ++L + +R
Sbjct: 738 ALARKTLTKPIEIVVGGRSVVAPE--ITQIVEVCNEEKKFVRLLELLGNLYSTDENEDAR 795
Query: 705 VIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAAR 763
+IF + D L R + R + ++IHG K Q +RD + F++G P+L+AT VAAR
Sbjct: 796 SLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAAR 855
Query: 764 GLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGA 823
GLD+K +++V+NYD PN +EDYVHR A TF +E +Y+ D+ K L+ +
Sbjct: 856 GLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQS 915
Query: 824 NQHVPPEVRDM 834
Q VP V+ +
Sbjct: 916 GQEVPEAVQKL 926
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 681 (244.8 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 163/409 (39%), Positives = 240/409 (58%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI L GRD++A A+TGSGKT
Sbjct: 283 DAPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKT 340
Query: 509 LGYLIPAFILLRQLHNN-------PRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCT 561
+L+P IL +H+ P +++APTREL QI EA KF + +
Sbjct: 341 AAFLLP--ILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAV 398
Query: 562 CLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFE 621
+YGG G +R++ QG +I+ ATPGRL DI+ +KI Q+ LVLDEADRMLDMGF
Sbjct: 399 VIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG 458
Query: 622 PQIRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAI 676
P+++K+++ MP RQTLM++AT+P++++++A++ L N + V +G V A + +
Sbjct: 459 PEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG--GACRDV 516
Query: 677 TQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDK 735
Q V V Q K +L +ILR R ++F TK+ D +A + + +IHGD+
Sbjct: 517 QQTVLQVGQFSKREKLVEILR-NIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDR 575
Query: 736 SQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXX 795
Q ER+ L FR GK P+LVAT VAARGLDI++++ VIN+D P+ +++YVHRI
Sbjct: 576 EQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRC 635
Query: 796 XXXXVAHTFFS-EQDSKYAADLVKVLEGANQHVPPEVRDMALRCG-PGF 842
A +FF E D+ A LVKVL A Q VP + ++A PGF
Sbjct: 636 GNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGF 684
Score = 49 (22.3 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 285 GTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
G NS K+ A G G VT P P + + AH+Q G F+
Sbjct: 224 GKNSWKSEAEGGESSDTQGPKVTYIPPPPP---EDEDSIFAHYQTGISFD 270
Score = 46 (21.3 bits), Expect = 6.0e-70, Sum P(2) = 6.0e-70
Identities = 18/78 (23%), Positives = 30/78 (38%)
Query: 376 KDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLN--AVAGHAMHGMYSHAGSFPN 433
+ G + G ++P L+ G Q G+ G GLN + G + S A +
Sbjct: 178 RTGGLFGSRRPALSGTGNGDTSQSRSGSGSERGGYKGLNEEVITGSGKNSWKSEAEGGES 237
Query: 434 NAMMRP--TFMGSPGVTD 449
+ P T++ P D
Sbjct: 238 SDTQGPKVTYIPPPPPED 255
Score = 37 (18.1 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 192 ENSQTAQPQGHQYPHQQLQYTAYQQGIPPQGKQS--SHQQTQV 232
+NS ++ +G + Q Y PP+ + S +H QT +
Sbjct: 225 KNSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGI 267
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 695 (249.7 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 146/366 (39%), Positives = 218/366 (59%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN-GPTVLVL 535
+ PT IQ Q P+ + GRD+V +AKTGSGKT+ +L+P F ++ N GP L+L
Sbjct: 398 YDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPIGLIL 457
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTRELA QI + F ++ L C YGG P Q+ +L +GA+IVVAT GR+ D+L
Sbjct: 458 TPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLA 517
Query: 596 MKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652
+ + + + +VLDEADRM DMGFEPQ+ KI + P RQT++++AT PK + +
Sbjct: 518 ANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFSATMPKIMDALV 577
Query: 653 SDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS---RVIIFC 709
+L NPV++ +G +A+ ITQ VE+ + K RL ++L + R +IF
Sbjct: 578 KKVLKNPVEIEVGGKSVVASE--ITQIVEIRDEKSKFNRLLELLGELYKDDDDVRSLIFV 635
Query: 710 STKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK 768
+ D+L R + R +G +++HG K Q +RD ++ F+SG P+++AT VAARGLD+K
Sbjct: 636 ERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLDVK 695
Query: 769 DIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVP 828
+++V+NYD PN +EDYVHR A TF +E+ A + K LE + Q VP
Sbjct: 696 QLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAIGIAKALEQSGQPVP 755
Query: 829 PEVRDM 834
++ +M
Sbjct: 756 EKLIEM 761
Score = 39 (18.8 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 20/76 (26%), Positives = 25/76 (32%)
Query: 379 PVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLNAVAGHAMHGMYSHAGSFPNNAMMR 438
P G PK A Q + GA G+A AV+ A S A S P +
Sbjct: 58 PYGGKFDPKAIAKKASARHQSPTVLGALQGRAAEKTAVS-IAAPAKGSAASSLPQGKPIS 116
Query: 439 PTFMGSPGVTDLSPAE 454
G D P +
Sbjct: 117 GFGFGKASNDDKVPTK 132
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 679 (244.1 bits), Expect = 6.0e-70, Sum P(2) = 6.0e-70
Identities = 164/409 (40%), Positives = 241/409 (58%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI L GRD++A A+TGSGKT
Sbjct: 283 DAPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKT 340
Query: 509 LGYLIPAFILLRQLHNN---PR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCT 561
+L+P IL +H+ R P +++APTREL QI EA KF + +
Sbjct: 341 AAFLLP--ILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAV 398
Query: 562 CLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFE 621
+YGG G +R++ QG +I+ ATPGRL DI+ +KI QV LVLDEADRMLDMGF
Sbjct: 399 VIYGGTQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFG 458
Query: 622 PQIRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAI 676
P+++K+++ MP RQTLM++AT+P++++++A + L N + V +G V A + +
Sbjct: 459 PEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACRDV 516
Query: 677 TQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDK 735
Q + V Q K +L +ILR+ R ++F TK+ D +A + + +IHGD+
Sbjct: 517 QQTILQVGQYSKREKLVEILRSIG-DERTMVFVETKKKADFIATFLCQEKISTTSIHGDR 575
Query: 736 SQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXX 795
Q ER+ L FR GK P+LVAT VAARGLDI++++ VIN+D P+ +++YVHRI
Sbjct: 576 EQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRC 635
Query: 796 XXXXVAHTFFS-EQDSKYAADLVKVLEGANQHVPPEVRDMALRCG-PGF 842
A +FF E D+ A LVKVL A Q VP + ++A PGF
Sbjct: 636 GNTGRAISFFDPESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSTYVPGF 684
Score = 48 (22.0 bits), Expect = 6.0e-70, Sum P(2) = 6.0e-70
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 285 GTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
G NS K+ A G G VT P P + + AH+Q G F+
Sbjct: 224 GKNSWKSEAEGGESGDTQGPKVTYIPPPPP---EDEDSIFAHYQTGINFD 270
Score = 40 (19.1 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 23/67 (34%), Positives = 27/67 (40%)
Query: 352 FGLG---RGYE-DNVHCRTGNDYYFNGNKDGPVMGPQQPKLAALPMGRNPQETRMGGAAP 407
FGLG R YE D RTG GP G ++P L+ G Q G+
Sbjct: 161 FGLGNPNREYEQDEGTQRTG----------GP-FGSRRPVLSGAGNGDTYQSRSGSGSRR 209
Query: 408 GQATGLN 414
G GLN
Sbjct: 210 GGYKGLN 216
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 678 (243.7 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
Identities = 162/407 (39%), Positives = 239/407 (58%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI GRD++A A+TGSGKT
Sbjct: 284 DPPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKT 341
Query: 509 LGYLIPAFI-LLRQLHNNPR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCL 563
+L+P ++R R P +++APTREL QI EA KF + + +
Sbjct: 342 AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 401
Query: 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQ 623
YGG G +R++ QG +I+ ATPGRL D++ +KI QV LVLDEADRMLDMGF P+
Sbjct: 402 YGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPE 461
Query: 624 IRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAITQ 678
++K+++ MP RQTLM++AT+P++++++A + L N + V +G V A + + Q
Sbjct: 462 MKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACRDVQQ 519
Query: 679 HVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQ 737
+ V Q K +L +ILR R ++F TK+ D +A + + +IHGD+ Q
Sbjct: 520 TILQVGQYSKREKLVEILR-NIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQ 578
Query: 738 GERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXX 797
ER+ L FR GK P+LVAT VAARGLDI++++ VIN+D P+ +++YVHRI
Sbjct: 579 REREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGN 638
Query: 798 XXVAHTFFS-EQDSKYAADLVKVLEGANQHVPPEVRDMALRC-GPGF 842
A +FF E DS+ A LVKVL A Q VP + ++A GPGF
Sbjct: 639 TGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFSTYGPGF 685
Score = 48 (22.0 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 285 GTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
G NS K+ A G G VT P P + + AH+Q G F+
Sbjct: 225 GKNSWKSEAEGGESGDTQGPKVTYIPPPPP---EDEDSIFAHYQTGINFD 271
Score = 44 (20.5 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 376 KDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLN--AVAGHAMHGMYSHA 428
+ G + G ++ L+ G Q GG+ G GLN + G + S A
Sbjct: 179 RSGGIFGSRRSALSGAGNGDTFQSRSGGGSGRGGYKGLNEEVITGSGKNSWKSEA 233
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 678 (243.7 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
Identities = 162/407 (39%), Positives = 239/407 (58%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI GRD++A A+TGSGKT
Sbjct: 284 DPPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKT 341
Query: 509 LGYLIPAFI-LLRQLHNNPR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCL 563
+L+P ++R R P +++APTREL QI EA KF + + +
Sbjct: 342 AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 401
Query: 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQ 623
YGG G +R++ QG +I+ ATPGRL D++ +KI QV LVLDEADRMLDMGF P+
Sbjct: 402 YGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPE 461
Query: 624 IRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAITQ 678
++K+++ MP RQTLM++AT+P++++++A + L N + V +G V A + + Q
Sbjct: 462 MKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACRDVQQ 519
Query: 679 HVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQ 737
+ V Q K +L +ILR R ++F TK+ D +A + + +IHGD+ Q
Sbjct: 520 TILQVGQYSKREKLVEILR-NIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQ 578
Query: 738 GERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXX 797
ER+ L FR GK P+LVAT VAARGLDI++++ VIN+D P+ +++YVHRI
Sbjct: 579 REREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGN 638
Query: 798 XXVAHTFFS-EQDSKYAADLVKVLEGANQHVPPEVRDMALRC-GPGF 842
A +FF E DS+ A LVKVL A Q VP + ++A GPGF
Sbjct: 639 TGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFSTYGPGF 685
Score = 48 (22.0 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 285 GTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
G NS K+ A G G VT P P + + AH+Q G F+
Sbjct: 225 GKNSWKSEAEGGESGDTQGPKVTYIPPPPP---EDEDSIFAHYQTGINFD 271
Score = 44 (20.5 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 376 KDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLN--AVAGHAMHGMYSHA 428
+ G + G ++ L+ G Q GG+ G GLN + G + S A
Sbjct: 179 RSGGIFGSRRSALSGAGNGDTFQSRSGGGSGRGGYKGLNEEVITGSGKNSWKSEA 233
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 707 (253.9 bits), Expect = 1.5e-69, P = 1.5e-69
Identities = 144/375 (38%), Positives = 226/375 (60%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPR 527
++ ++S G+ PT IQAQ P GRD++ +AKTGSGKT+ +L+P F ++ Q
Sbjct: 430 ISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTG 489
Query: 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
GP +++ PTRELA QI E F + + C YGGAP Q+ +L +GA+IVV TP
Sbjct: 490 EGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTP 549
Query: 588 GRLNDILEM---KKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
GR+ D+L + + + + LVLDEADRM D+GFEPQ+ +I+N + P RQT++++AT+
Sbjct: 550 GRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATF 609
Query: 645 PKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA---QER 701
P+ + +A +L PV++ +G +A+ + Q VEV P+ K RL ++L +
Sbjct: 610 PRAMEALARKVLKKPVEITVGGRSVVASE--VEQIVEVRPEESKFSRLLELLGELYNNQL 667
Query: 702 GSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDV 760
R ++F + D L + R + + +IHG K Q +RD ++ +++G +L+AT V
Sbjct: 668 DVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSV 727
Query: 761 AARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVL 820
ARGLD+K +++V+NYD PN +EDYVHR+ VA TF + + KYA D+ K L
Sbjct: 728 VARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKAL 787
Query: 821 EGANQHVPPEVRDMA 835
+ + Q VP E++ +A
Sbjct: 788 KMSKQPVPKELQTLA 802
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 672 (241.6 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 163/409 (39%), Positives = 240/409 (58%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI L GRD++A A+TGSGKT
Sbjct: 280 DAPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKT 337
Query: 509 LGYLIPAFILLRQLHNN---PR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCT 561
+L+P IL +H+ R P +++APTREL QI EA KF + +
Sbjct: 338 AAFLLP--ILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAV 395
Query: 562 CLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFE 621
+YGG G +R++ QG +I+ ATPGRL DI+ +KI Q+ LVLDEADRMLDMGF
Sbjct: 396 VIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG 455
Query: 622 PQIRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAI 676
P+++K+++ MP RQTLM++AT+P++++++A++ L N + V +G V A + +
Sbjct: 456 PEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG--GACRDV 513
Query: 677 TQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDK 735
Q V Q K +L +ILR R ++F TK+ D +A + + +IHGD+
Sbjct: 514 QQADLQVGQYSKREKLLEILR-NIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDR 572
Query: 736 SQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXX 795
Q ER+ L FR GK P+LVAT VAARGLDI++++ VIN+D P+ +++YVHRI
Sbjct: 573 EQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRC 632
Query: 796 XXXXVAHTFFS-EQDSKYAADLVKVLEGANQHVPPEVRDMALRCG-PGF 842
A +FF E D+ A LVKVL A Q VP + ++A PGF
Sbjct: 633 GNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGF 681
Score = 50 (22.7 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 285 GTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
G NS K+ A G G VT P P + + AH+Q G F+
Sbjct: 221 GKNSWKSEAEGGESSDTQGPKVTYIPPPPP---EDEDSIFAHYQTGINFD 267
Score = 37 (18.1 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 192 ENSQTAQPQGHQYPHQQLQYTAYQQGIPPQGKQS--SHQQTQV 232
+NS ++ +G + Q Y PP+ + S +H QT +
Sbjct: 222 KNSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGI 264
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 668 (240.2 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 158/399 (39%), Positives = 236/399 (59%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI L GRD++A A+TGSGKT
Sbjct: 256 DAPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKT 313
Query: 509 LGYLIPAFI-LLRQLHNNPR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCL 563
+L+P ++R R P +++APTREL QI EA KF + + +
Sbjct: 314 AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 373
Query: 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQ 623
YGG G +R++ QG +I+ ATPGRL DI+ +KI QV LVLDEADRMLDMGF P+
Sbjct: 374 YGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPE 433
Query: 624 IRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAITQ 678
++K+++ MP RQTL+++AT+P++++++A + L N + V +G V A + + Q
Sbjct: 434 MKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACRDVQQ 491
Query: 679 HVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQ 737
+ V Q K +L +ILR R ++F TK+ D +A + + +IHGD+ Q
Sbjct: 492 SILQVGQYSKREKLVEILR-NIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQ 550
Query: 738 GERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXX 797
ER+ L FR GK P+LVAT VAARGLDI++++ VIN+D P+ +++YVHRI
Sbjct: 551 REREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGN 610
Query: 798 XXVAHTFF-SEQDSKYAADLVKVLEGANQHVPPEVRDMA 835
A +FF +E D+ A LVKVL A Q VP + ++A
Sbjct: 611 TGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIA 649
Score = 52 (23.4 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 285 GTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
G NS K+ A G G VT P P + + AH+Q G F+
Sbjct: 197 GKNSWKSEAEGGESSDIQGPKVTYIPPPPP---EDEDSIFAHYQTGINFD 243
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 660 (237.4 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 157/399 (39%), Positives = 238/399 (59%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI L GRD++A A+TGSGKT
Sbjct: 267 DAPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKT 324
Query: 509 LGYLIPAFI-LLRQLHNNPR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCL 563
+L+P ++R R P +++APTREL QI EA KF + + +
Sbjct: 325 AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 384
Query: 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQ 623
YGG G +R++ QG +I+ ATPGRL DI+ +KI QV LVLDEADRMLDMGF P+
Sbjct: 385 YGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPE 444
Query: 624 IRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAITQ 678
++K+++ MP RQTL+++AT+P++++++A + L N + V +G V A + + Q
Sbjct: 445 MKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACRDVQQ 502
Query: 679 HVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQ 737
+ V + K+R+L +ILR R ++F TK+ D +A + + +IHGD+ Q
Sbjct: 503 SILQVGPVFKKRKLVEILR-NIGDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQ 561
Query: 738 GERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXX 797
ER+ L FR GK P+LVAT VAARGLDI++++ VIN++ P+ +++YVHRI
Sbjct: 562 REREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGN 621
Query: 798 XXVAHTFF-SEQDSKYAADLVKVLEGANQHVPPEVRDMA 835
A +FF +E D+ A LVKVL A Q VP + ++A
Sbjct: 622 TGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIA 660
Score = 60 (26.2 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 32/117 (27%), Positives = 43/117 (36%)
Query: 222 GKQSSHQQTQVGAQGKQFGGQQDYNKAAITKREEAEFPPGNQTGFSPSNFQQTGASSSQN 281
G+ S + Q Q G Q GG R+ A G+ F + GA N
Sbjct: 151 GRDSEYDQDQ----GSQRGG------GLFGSRKPAASDSGSGDTFQSRSGNARGAYKGLN 200
Query: 282 ---LPG-GTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
+ G G NS K+ A G G VT P P + + AH+Q G F+
Sbjct: 201 EEVVTGSGKNSWKSEAEGGESSDIQGPKVTYIPPPPP---EDEDSIFAHYQTGINFD 254
Score = 41 (19.5 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 241 GQQDYNKAAITKREEAEFPPGNQ-----TGFSPSNFQQTGASSSQ--NLPGGTNS-MKTG 292
G +D+ +A I K + + P + +G + F +T ASSS+ + P G + M++G
Sbjct: 2 GDEDW-EAEILKPHVSSYVPVFEKDKYSSGANGDTFNRTSASSSEMEDGPSGRDHFMRSG 60
Query: 293 AHLG 296
G
Sbjct: 61 FSSG 64
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 660 (237.4 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 157/399 (39%), Positives = 238/399 (59%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI L GRD++A A+TGSGKT
Sbjct: 267 DAPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKT 324
Query: 509 LGYLIPAFI-LLRQLHNNPR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCL 563
+L+P ++R R P +++APTREL QI EA KF + + +
Sbjct: 325 AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 384
Query: 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQ 623
YGG G +R++ QG +I+ ATPGRL DI+ +KI QV LVLDEADRMLDMGF P+
Sbjct: 385 YGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPE 444
Query: 624 IRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAITQ 678
++K+++ MP RQTL+++AT+P++++++A + L N + V +G V A + + Q
Sbjct: 445 MKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACRDVQQ 502
Query: 679 HVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQ 737
+ V + K+R+L +ILR R ++F TK+ D +A + + +IHGD+ Q
Sbjct: 503 SILQVGPVFKKRKLVEILR-NIGDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQ 561
Query: 738 GERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXX 797
ER+ L FR GK P+LVAT VAARGLDI++++ VIN++ P+ +++YVHRI
Sbjct: 562 REREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGN 621
Query: 798 XXVAHTFF-SEQDSKYAADLVKVLEGANQHVPPEVRDMA 835
A +FF +E D+ A LVKVL A Q VP + ++A
Sbjct: 622 TGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIA 660
Score = 60 (26.2 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 32/117 (27%), Positives = 43/117 (36%)
Query: 222 GKQSSHQQTQVGAQGKQFGGQQDYNKAAITKREEAEFPPGNQTGFSPSNFQQTGASSSQN 281
G+ S + Q Q G Q GG R+ A G+ F + GA N
Sbjct: 151 GRDSEYDQDQ----GSQRGG------GLFGSRKPAASDSGSGDTFQSRSGNARGAYKGLN 200
Query: 282 ---LPG-GTNSMKTGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
+ G G NS K+ A G G VT P P + + AH+Q G F+
Sbjct: 201 EEVVTGSGKNSWKSEAEGGESSDIQGPKVTYIPPPPP---EDEDSIFAHYQTGINFD 254
Score = 41 (19.5 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 241 GQQDYNKAAITKREEAEFPPGNQ-----TGFSPSNFQQTGASSSQ--NLPGGTNS-MKTG 292
G +D+ +A I K + + P + +G + F +T ASSS+ + P G + M++G
Sbjct: 2 GDEDW-EAEILKPHVSSYVPVFEKDKYSSGANGDTFNRTSASSSEMEDGPSGRDHFMRSG 60
Query: 293 AHLG 296
G
Sbjct: 61 FSSG 64
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 664 (238.8 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 157/399 (39%), Positives = 236/399 (59%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + + TL ++ AG++ TP+Q + PI L GRD++A A+TGSGKT
Sbjct: 255 DAPPAILTFEEANLCQTLNN--NIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKT 312
Query: 509 LGYLIPAFI-LLRQLHNNPR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCL 563
+L+P ++R R P +++APTREL QI EA KF + + +
Sbjct: 313 AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 372
Query: 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQ 623
YGG G +R++ QG +I+ ATPGRL DI+ +KI QV LVLDEADRMLDMGF P+
Sbjct: 373 YGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPE 432
Query: 624 IRKIVN--EMPP--HRQTLMYTATWPKDVRKIASDLLVNP-VQVNIGNVDELAANKAITQ 678
++K+++ MP RQTL+++AT+P++++++A D L + + V +G V A + + Q
Sbjct: 433 MKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVG--GACRDVQQ 490
Query: 679 HVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQ 737
+ V Q K +L +ILR R ++F TK+ D +A + + +IHGD+ Q
Sbjct: 491 TILQVGQYSKREKLVEILR-NIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQ 549
Query: 738 GERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXX 797
ER+ L FR GK P+LVAT VAARGLDI++++ VIN+D P+ +++YVHRI
Sbjct: 550 REREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGN 609
Query: 798 XXVAHTFF-SEQDSKYAADLVKVLEGANQHVPPEVRDMA 835
A +FF ++ D+ A LVKVL A Q VP + ++A
Sbjct: 610 TGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEIA 648
Score = 47 (21.6 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 27/104 (25%), Positives = 36/104 (34%)
Query: 235 QGKQFGGQQDYNKAAITKREEAEFPPGNQTGFSPSNFQQTGASSSQN---LPG-GTNSMK 290
QG Q GG R+ A GN + + G N + G G NS K
Sbjct: 148 QGTQRGG------GLFGSRKPAASDSGNGDTYQSRSGSGRGGYKGLNEEVVTGSGKNSWK 201
Query: 291 TGAHLGHVQQFGGSSVTLQQPNPMVQLQQTGTDMAHHQHGPRFE 334
+ G G VT P P + + AH+Q G F+
Sbjct: 202 SETEGGESSDSQGPKVTYIPPPPP---EDEDSIFAHYQTGINFD 242
Score = 39 (18.8 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 36/186 (19%), Positives = 61/186 (32%)
Query: 212 TAYQQGIPPQGKQSSHQQTQVGAQGKQFGGQQDYNKAAITKREEAEFPPGNQTGFSPSNF 271
T+ I K+ + T +GK FG + N + + + F + +
Sbjct: 39 TSASSDIGESSKKENTSTTGGFGRGKGFGNRGFLNNK-FEEGDSSGFWKESNNDCEDNQT 97
Query: 272 QQTGASSSQNLPGGTNSMKTGA-HLGHVQQFGG--SSVTLQQPNPMVQLQQTGTDMAHHQ 328
+ G S G +S +G G F G L +PN Q GT
Sbjct: 98 RSRGFSKRGGCQDGNDSEASGPFRRGGRGSFRGCRGGFGLGRPNSESD-QDQGTQRGGGL 156
Query: 329 HGPR--FENQMGPQMMHXXXXXXXXFGLGRGYEDNVHCRTGNDYYFNGNKDGPVMGPQQP 386
G R + G + G +G + V +G + + + + G Q P
Sbjct: 157 FGSRKPAASDSGNGDTYQSRSGSGRGGY-KGLNEEVVTGSGKNSWKSETEGGESSDSQGP 215
Query: 387 KLAALP 392
K+ +P
Sbjct: 216 KVTYIP 221
Score = 38 (18.4 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 192 ENSQTAQPQGHQYPHQQLQYTAYQQGIPPQGKQS--SHQQTQV 232
+NS ++ +G + Q Y PP+ + S +H QT +
Sbjct: 197 KNSWKSETEGGESSDSQGPKVTYIPPPPPEDEDSIFAHYQTGI 239
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 699 (251.1 bits), Expect = 5.2e-68, P = 5.2e-68
Identities = 144/363 (39%), Positives = 223/363 (61%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLV 534
GF PTPIQ Q P + GRD++ IAKTGSGKTL +++P F +L Q +G ++
Sbjct: 529 GFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAII 588
Query: 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL 594
+APTREL QI + KF +S L C+YGG Q+ EL +GA+I+V TPGR+ D+L
Sbjct: 589 MAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML 648
Query: 595 EMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
+ +V+ +VLDEADRM DMGFEPQ+ +I++ + P RQT+M++AT+P+ + +
Sbjct: 649 AANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEAL 708
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA-QERGSRVIIFCS 710
A +L P++V +G + K + QHV ++ K +L ++L QE GS +I+F
Sbjct: 709 ARRILKKPIEVIVGGRSVVC--KEVEQHVVILNDDAKFFKLLELLGIYQEAGS-IIVFVD 765
Query: 711 TKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
+ D L R + + ++ +++HG Q +RD + F+SGK +L+AT VAARGLD+KD
Sbjct: 766 KQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKD 825
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPP 829
+ +V+NYD PN EDYVHR A+TF + + S+YA D+++ ++ + +P
Sbjct: 826 LILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGTLIPA 885
Query: 830 EVR 832
E++
Sbjct: 886 ELQ 888
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 147/361 (40%), Positives = 222/361 (61%)
Query: 462 VSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ 521
+SA L + S G+ +P+PIQAQ P L G+D++A A+TG+GKT G+ +P LL +
Sbjct: 8 LSAPLQKAVS--EQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAK 65
Query: 522 LHNNPRNGPT-VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGA 580
H ++G T LVL PTRELA Q+ + +G+ L ++GG P PQ+ +L G
Sbjct: 66 GHK-AKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGV 124
Query: 581 DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMY 640
D++VATPGRL D+++ + F Q+ +LVLDEADRMLDMGF I+KI+ +P RQ LM+
Sbjct: 125 DVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMF 184
Query: 641 TATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQE 700
+AT+ ++R++A L+ +PV++++ AA + Q + V + +K L Q+++ QE
Sbjct: 185 SATFSDEIRELAKGLVNHPVEISV--TPRNAAATTVKQWICPVDKTQKSALLIQLIK-QE 241
Query: 701 RGSRVIIFCSTKRLCDQLARS-IGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759
+V++F TK ++LA+S I A AIHG+KSQG R L F+SG+ +LVATD
Sbjct: 242 NWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATD 301
Query: 760 VAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKV 819
+AARGLDI + V+N+D PN EDYVHRI A + S ++ K D+ ++
Sbjct: 302 IAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIERL 361
Query: 820 L 820
+
Sbjct: 362 I 362
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 152/372 (40%), Positives = 226/372 (60%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG 529
++ + + PTPIQA P AL GRD++ IAKTGSGKT YL PA + ++ Q G
Sbjct: 279 AIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEG 338
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL-DQGADIVVATPG 588
P +++ PTRELA Q+ EA KF + ++ C YGG K Q EL ++GA++VV TPG
Sbjct: 339 PVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVCTPG 398
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
R+ D+++M +F + + LV DEADRM DMGFE Q++ I + + P RQ LM++AT+ + V
Sbjct: 399 RIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLMFSATFKQKV 458
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERR--LQQILRAQERGSRVI 706
++A D LV+PV++ G V E AN I Q V V+ + + ++ ++ G +V+
Sbjct: 459 ERLARDALVDPVRIVQGEVGE--ANADIEQKVFVMQNQDVKLHWLIRNLVEFASLG-KVL 515
Query: 707 IFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
IF + K + +A+ + ++F + +HGD Q ER+ L +FR KS ILVATDVAARGL
Sbjct: 516 IFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVATDVAARGL 574
Query: 766 DIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQ 825
DI +IR VIN+D ++ +VHRI A+T +E+D + LVK LE +Q
Sbjct: 575 DISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQ 634
Query: 826 HVPPEVRDMALR 837
VP + D+A++
Sbjct: 635 EVPKPLMDLAMK 646
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 154/377 (40%), Positives = 219/377 (58%)
Query: 474 SAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTV 532
S F PTP+Q+ WPIAL G D++ I+KTGSGKTL +++PA +L Q + GP+V
Sbjct: 156 SKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYPGPSV 215
Query: 533 LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLND 592
LV+APTRELA QI EA ++ R + +YGGAP+ Q +L + IVV TPGR+ D
Sbjct: 216 LVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRIID 275
Query: 593 ILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652
+E + +S LV+DEADR+++MGFE QI I N + P RQ L ++ATWPK V A
Sbjct: 276 FMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWPKKVSSFA 335
Query: 653 SDLLVNPVQVNIGNVDELAANKAITQHVEVVP-QMEKERRLQ----QILRAQERGSRVII 707
+ P+++ IG+ +L ANK I+Q ++VP +K L +I A E+ ++ +I
Sbjct: 336 EKHIRTPIRLQIGS-SQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEK-AQTLI 393
Query: 708 FCSTKRLCDQLARSI---GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
F TK+ D L I G N +HGD Q R+ ++ F++ + I+VATDVA+RG
Sbjct: 394 FTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRG 453
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ---DSKYAADLVKVLE 821
LDIK I VIN+ P+ E YVHRI +H+ S D + DL +L+
Sbjct: 454 LDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNLLQ 513
Query: 822 GANQHVPPEVRDM-ALR 837
+ Q VP E D+ A+R
Sbjct: 514 RSEQEVPSEFLDINAIR 530
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 166/390 (42%), Positives = 228/390 (58%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF--ILLR--QLHNNP 526
+++ +G+S PTP+Q + P L RD+++ A+TGSGKT +L+P IL + P
Sbjct: 153 NVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPP 212
Query: 527 R--NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPK-GPQLRELDQ 578
NG P LVL+PTRELA QI EA KF S + LYGG Q+ L
Sbjct: 213 AFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRA 272
Query: 579 GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE-MPPH--R 635
G I++ATPGRL DI+E I LVLDEADRMLDMGFEPQIRKIV + MPP R
Sbjct: 273 GTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTAR 332
Query: 636 QTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQ 694
T M++AT+PK+++ +A D L N + + +G V + N I Q + V +MEK L +
Sbjct: 333 TTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSEN--IEQRLLWVNEMEKRSNLME 390
Query: 695 ILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSP 753
IL + + V++F TKR ++LA + R +++IHGD Q ER+ L FRSG+ P
Sbjct: 391 ILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCP 450
Query: 754 ILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYA 813
ILVAT VAARGLDI ++R VINYD P ++YVHRI +A +FF++++
Sbjct: 451 ILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIG 510
Query: 814 ADLVKVLEGANQHVPPEVRDMAL--RCGPG 841
DL ++ +NQ VP + +A R G G
Sbjct: 511 RDLKNLIVESNQEVPEWLHQVAAEGRIGGG 540
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 155/406 (38%), Positives = 230/406 (56%)
Query: 452 PAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGY 511
P + Q +A++ + + GF P+PIQ+Q WP+ L G+D + +++TGSGKTL +
Sbjct: 81 PVNSFEQAFGSNASI--MGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAF 138
Query: 512 LIPAFILL-RQLHNNPRN------GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLY 564
L+PA + + QL +N P VLVL+PTRELA QI+ E K+ + S CLY
Sbjct: 139 LLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGYKS-VCLY 197
Query: 565 GGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQI 624
GG + Q+ G +IV+ATPGRL D+ I V+ +VLDEADRMLDMGFE I
Sbjct: 198 GGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAI 257
Query: 625 RKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP 684
R+I+ E+ P R + +ATWP+ VRK+ V G++D L + K++TQ E VP
Sbjct: 258 RRILFEIRPDRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLD-LTSCKSVTQFFEFVP 316
Query: 685 QMEKERRLQQILR----AQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGE 739
+ R+ +I+ A + ++IIF +K + D L+ + + +HG +SQ +
Sbjct: 317 HDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSD 376
Query: 740 RDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXX 799
R+ LN RSG+ ILVATD+A+RG+D+ DI V+NYDFP +E+YVHR+
Sbjct: 377 REMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKG 436
Query: 800 VAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMA----LRCGPG 841
A +F D L+++LE + Q VP ++R A L+C G
Sbjct: 437 EAMSFLWWNDRSNFEGLIQILEKSEQEVPDQLRRDAEKYRLKCQSG 482
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 155/381 (40%), Positives = 233/381 (61%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN----- 525
++ G+S TP+Q + P+ GRD+++ A+TGSGKT +L+P I+ R + +
Sbjct: 181 NISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLP--IVDRMMKDGVTASA 238
Query: 526 --PRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIV 583
+ P +++APTREL QI EA KF + + +YGG G +R++ QG +I+
Sbjct: 239 FQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNIL 298
Query: 584 VATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVN--EMPP--HRQTLM 639
ATPGRL DI+E KI +V LVLDEADRMLDMGF ++K+++ EMP RQTLM
Sbjct: 299 CATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLM 358
Query: 640 YTATWPKDVRKIASDLL-VNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
++AT+P++V+++A + L + + + IGN A + Q++ VP++ K +L +IL++
Sbjct: 359 FSATFPEEVQRLAGEFLKTDYIFLVIGNT--CGACSDVQQNILQVPRLSKRDKLIEILQS 416
Query: 699 QERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
G R ++F TK+ D LA + + N + +IHGD+ Q ER+ L FRSGK ILVA
Sbjct: 417 TG-GERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILVA 475
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADL 816
T VA+RGLDI++++ VIN+D PN +EDYVHRI A +FF +Q D L
Sbjct: 476 TSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDGHLVQSL 535
Query: 817 VKVLEGANQHVPPEVRDMALR 837
+KVL A Q VP + +MA++
Sbjct: 536 LKVLSEAQQEVPVWLEEMAVQ 556
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 671 (241.3 bits), Expect = 1.0e-65, P = 1.0e-65
Identities = 147/366 (40%), Positives = 218/366 (59%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVL 535
+S PT IQAQ P + GRD++ IAKTGSGKTL +L+P F +L Q +GP ++L
Sbjct: 324 YSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVIL 383
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q EANKF + L C YGG Q+ +L +GA+IVV TPGR+ D+L
Sbjct: 384 APTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLA 443
Query: 596 M---KKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652
K + +V+ LVLDEADRM D GFEPQI K+VN + P +QT++++AT+P+ + +A
Sbjct: 444 ANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEALA 503
Query: 653 SDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ-ERGSRVIIFCST 711
+L PV++ +G + ++ ITQ+ + + +K +L ++L E GS I+F
Sbjct: 504 RKVLDKPVEILVGGKSVVCSD--ITQNAVICAEHQKFLKLLELLGMYYEEGSS-IVFVDK 560
Query: 712 KRLCDQLARSIGRN-FGAIA-IHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
+ D + + R + ++A +HG Q +RD + F++G +LVAT VAARGLD+K+
Sbjct: 561 QEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKN 620
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTF-FSEQDSKYAADLVKVLEGANQHVP 828
+ +V+NYD PN EDYVHR+ A+TF E K A ++ + E A P
Sbjct: 621 LILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAGCKPP 680
Query: 829 PEVRDM 834
+++ M
Sbjct: 681 ADLKAM 686
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 155/379 (40%), Positives = 230/379 (60%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG- 529
++ +G+ PTP+Q PI GRD++A A+TGSGKT +L+P IL R + +
Sbjct: 291 NVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLP--ILQRFMTDGVAASK 348
Query: 530 ------PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIV 583
P +++APTREL QI EA KF + + +YGG G +RE+ +G +++
Sbjct: 349 FSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVL 408
Query: 584 VATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPP--HRQTLM 639
ATPGRL+D++ KI +V LVLDEADRMLDMGFEP++RK+V MP RQTLM
Sbjct: 409 CATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLM 468
Query: 640 YTATWPKDVRKIASDLL-VNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
++AT+P+D++++A+D L V+ + + +G V ++ + Q V V Q K +L ++LRA
Sbjct: 469 FSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSD--VEQTVVQVDQYSKRDQLLELLRA 526
Query: 699 QERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
R ++F TKR D +A + + +IHGD+ Q ER+ L+ FR G P+LVA
Sbjct: 527 TGN-ERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVLVA 585
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFS-EQDSKYAADL 816
T VAARGLDI+ ++ V+N+D P+ +++YVHRI A +FF+ E D+ A L
Sbjct: 586 TSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSL 645
Query: 817 VKVLEGANQHVPPEVRDMA 835
VKVL GA Q VP + ++A
Sbjct: 646 VKVLSGAQQVVPKWLEEVA 664
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 143/345 (41%), Positives = 204/345 (59%)
Query: 467 PRVAS-MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN 525
P VA+ + +AG+ +PTPIQAQ P + GRD++ +A+TG+GKT + +P +L +L
Sbjct: 10 PAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALP---ILHRLQQG 66
Query: 526 PRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
R LV+APTRELA QI D GR +RL +YGG PQ+++L GA++VVA
Sbjct: 67 ERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVA 126
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
PGRL D + ID ++ +LVLDEAD+M DMGF P IR+++ +PP RQTL+++AT P
Sbjct: 127 CPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMP 186
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
D+R +A D+LV+PV V +G V A + + V Q K L ++LR + S V
Sbjct: 187 IDIRTLAQDILVDPVTVQVGTV---APAVTVAHALYPVEQHLKTPLLLELLRHTDTES-V 242
Query: 706 IIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF TK +L + + + A ++ G+ SQ R L+ FR G ILVATD+AARG
Sbjct: 243 LIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARG 302
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQD 809
+D+ + VINYD P+ E Y+HRI A T + D
Sbjct: 303 IDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDD 347
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 636 (228.9 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 151/399 (37%), Positives = 243/399 (60%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D+ PA + + + TL R ++ AG+ TP+Q + PI + GRD++A A+TGSGKT
Sbjct: 268 DVPPAILTFEEANLCETLRR--NVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKT 325
Query: 509 LGYLIP--AFILLRQLHNNPR---NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCL 563
+L+P ++++ + + P +++APTREL QI +A KF + + +
Sbjct: 326 AAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVV 385
Query: 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQ 623
YGG +R++++G +I+ ATPGRL DI+ +KI ++ LVLDEADRMLDMGF P+
Sbjct: 386 YGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPE 445
Query: 624 IRKIVNE--MPPH--RQTLMYTATWPKDVRKIASDLLVNP-VQVNIGNVDELAANKAITQ 678
I K++ + MP RQTLM++AT+P+++R++AS+ L + + V +G V ++ + Q
Sbjct: 446 IEKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSD--VAQ 503
Query: 679 HVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQ 737
V + + K +L +IL++ E+ R +IF +TK+ D +A + + F + +IHGD+ Q
Sbjct: 504 TVLEMRENGKMEKLLEILKSSEK-ERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQ 562
Query: 738 GERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXX 797
+R+ L FR+GK ++V T VAARGLDI++++ VINYD P V++YVHRI
Sbjct: 563 YQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGN 622
Query: 798 XXVAHTFFSEQDSKYAA-DLVKVLEGANQHVPPEVRDMA 835
A +FF+ QD A LVK+L A+Q VP + ++A
Sbjct: 623 TGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWLEEIA 661
Score = 42 (19.8 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 372 FNGNKDGPVMGPQQPKLAALPMG-RNPQETRMGGAAPGQATGLNAVAGHAMHGMYSHAG 429
+NGN+DG Q+P G RN E R G G N G + ++G
Sbjct: 112 YNGNEDG-----QKPNAFRGRGGFRNENEQRRGFGERGGFRSENGQRNFDNRGDFGNSG 165
Score = 38 (18.4 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 261 GNQTGFSPSNFQQTGASSSQN 281
GN+ G P+ F+ G ++N
Sbjct: 114 GNEDGQKPNAFRGRGGFRNEN 134
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 157/381 (41%), Positives = 216/381 (56%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNN 525
P + + G PTPIQ Q P+ L GRD++ IA TGSGKTL +++P IL L++
Sbjct: 107 PLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMM 166
Query: 526 P---RNGPTVLVLAPTRELATQIQDEANKFGRS------SRL-SCTCLYGGAPKGPQLRE 575
P GP LV+ P+RELA Q D +F S RL S C+ GG QL
Sbjct: 167 PIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCI-GGVDMRSQLDV 225
Query: 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHR 635
+ +G IVVATPGRL DIL KK+ LL LDEADR++D+GFE IR + + R
Sbjct: 226 VKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQR 285
Query: 636 QTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQI 695
QTL+++AT P ++ A+ LV PV VN+G AAN + Q VE V Q K L +
Sbjct: 286 QTLLFSATMPAKIQIFATSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLEC 343
Query: 696 LRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPI 754
L Q+ V+IFC K D + + + A+AIHG K Q +RD+ ++ F++GK +
Sbjct: 344 L--QKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDV 401
Query: 755 LVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAA 814
LVATDVA++GLD DI+ VINYD P +E+YVHRI +A TF ++ S+
Sbjct: 402 LVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITL 461
Query: 815 -DLVKVLEGANQHVPPEVRDM 834
DL +L+ A Q +PP + ++
Sbjct: 462 LDLKHLLQEAKQRIPPVLAEL 482
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 136/349 (38%), Positives = 205/349 (58%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF--ILLRQLHNNPRNGPTVL 533
G+ PTPIQ Q P L+GRD++A A+TG+GKT G+ +P ++ RQ H R L
Sbjct: 20 GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79
Query: 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDI 593
+L PTRELA QI + + + + ++GG PQ+ +L G D++VATPGRL D+
Sbjct: 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDL 139
Query: 594 LEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIAS 653
+ QV +LVLDEADRMLDMGF IR+++ ++P RQ L+++AT+ D++ +A
Sbjct: 140 EHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAE 199
Query: 654 DLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKR 713
LL NP+++ + + A+ +TQHV V + K L ++ + +V++F TK
Sbjct: 200 KLLHNPLEIEVARRN--TASDQVTQHVHFVDKKRKRELLSHMI-GKGNWQQVLVFTRTKH 256
Query: 714 LCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
+ LA + ++ + AIHG+KSQG R L F+SG +LVATD+AARGLDI+++
Sbjct: 257 GANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPH 316
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
V+NY+ PN EDYVHRI A + + K D+ K+L+
Sbjct: 317 VVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLK 365
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 148/356 (41%), Positives = 210/356 (58%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILL-RQLHNNPR 527
+ S+ AG+++PTPIQ Q P+ +QGRDIV +A+TG+GKTL + P L R P
Sbjct: 19 LTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRNASPAPV 78
Query: 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
G VLVLAPTRELA QI +G L + GGA G Q+R+L++GA I+VATP
Sbjct: 79 RGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVATP 138
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL D++E + + +V L+LDEAD+MLD+GF +R I +P RQTL ++AT PK
Sbjct: 139 GRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMPKA 198
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVII 707
V +A+ L NP +V++ A I Q V V Q EK L + +R E S I+
Sbjct: 199 VESLAATFLRNPAEVSVAPPATTAGR--IEQRVCFVEQPEKASLLIEKIRDPELRS-AIV 255
Query: 708 FCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
F TK D + + + + + ++AIHG+KSQ +R+ L F++G+ PILVATD+AARG+
Sbjct: 256 FTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIH 315
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEG 822
+ + VINYD P+ E +VHRI VA +F S +D + ++ L G
Sbjct: 316 VDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCS-RDERPTLRAIEKLTG 370
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 502 (181.8 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 107/256 (41%), Positives = 158/256 (61%)
Query: 460 HEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILL 519
H+ T + ++ + P PIQAQ PI + GRD + +AKTGSGKTLG+++P +L
Sbjct: 399 HQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLP---ML 455
Query: 520 RQLHNNPR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575
R + + P +GP LV+APTREL QI + KF ++ + C +YGG+ Q+ E
Sbjct: 456 RHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISE 515
Query: 576 LDQGADIVVATPGRLNDIL--EMKKI-DFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632
L +G +IVV TPGR+ DIL KI + +V+ LV+DEADRM DMGFEPQI +IV +
Sbjct: 516 LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 575
Query: 633 PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRL 692
P RQT++++AT+P+ V +A +L PV++ +G NK ITQ VE+ P+ E+ RL
Sbjct: 576 PDRQTVLFSATFPRQVETLARKVLNKPVEIQVGG--RSVVNKDITQLVEIRPESERFSRL 633
Query: 693 QQILRAQERGSRVIIF 708
++L +V++F
Sbjct: 634 LELLGEWYEKGKVLVF 649
Score = 224 (83.9 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 44/92 (47%), Positives = 61/92 (66%)
Query: 744 LNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHT 803
++ F+S +L+AT VAARGLD+K++ +V+N+D PN EDYVHR+ A T
Sbjct: 657 ISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVT 716
Query: 804 FFSEQDSKYAADLVKVLEGANQHVPPEVRDMA 835
F SE D+KYA DLVK LE + Q VP +V+ +A
Sbjct: 717 FISEDDAKYAPDLVKALELSEQPVPDDVKAVA 748
Score = 44 (20.5 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 693 QQILRAQERGSRVIIFCSTKRLCDQLARSIGR 724
QQI + RG+ +++ C+ R+ D L S G+
Sbjct: 511 QQISELK-RGTEIVV-CTPGRMIDILCTSSGK 540
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 150/367 (40%), Positives = 224/367 (61%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN----- 525
++ G+S TP+Q + P+ GRD+++ A+TGSGKT +L+P I+ R + +
Sbjct: 181 NISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLP--IVDRMMKDGVTASA 238
Query: 526 --PRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIV 583
+ P +++APTREL QI EA KF + + +YGG G +R++ QG +I+
Sbjct: 239 FQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNIL 298
Query: 584 VATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVN--EMPP--HRQTLM 639
ATPGRL DI+E KI +V LVLDEADRMLDMGF ++K+++ EMP RQTLM
Sbjct: 299 CATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLM 358
Query: 640 YTATWPKDVRKIASDLL-VNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
++AT+P++V+++A + L + + + IGN A + Q++ VP++ K +L +IL++
Sbjct: 359 FSATFPEEVQRLAGEFLKTDYIFLVIGNT--CGACSDVQQNILQVPRLSKRDKLIEILQS 416
Query: 699 QERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
G R ++F TK+ D LA + + N + +IHGD+ Q ER+ L FRSGK ILVA
Sbjct: 417 TG-GERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILVA 475
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADL 816
T VA+RGLDI++++ VIN+D PN +EDYVHRI A +FF +Q D L
Sbjct: 476 TSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDGHLVQSL 535
Query: 817 VKVLEGA 823
+KVL A
Sbjct: 536 LKVLSEA 542
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 154/377 (40%), Positives = 225/377 (59%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN----PR--- 527
+G+ PTP+Q PI GRD++A A+TGSGKT +L+P +L+QL + R
Sbjct: 199 SGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLP---ILQQLMADGVAASRFSE 255
Query: 528 -NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
P +++APTREL QI EA KF + + +YGG G Q+RE+++G +++ T
Sbjct: 256 IQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGGVNTGYQMREIEKGCNVLCGT 315
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPP--HRQTLMYTA 642
PGRL D++ K+ +V LVLDEADRMLDMGFEP +R++V MP RQTLM++A
Sbjct: 316 PGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEERQTLMFSA 375
Query: 643 TWPKDVRKIASDLL-VNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQER 701
T+P+D++++A+D L V+ + V +G V + + Q V + K +L +LR
Sbjct: 376 TFPEDIQRLAADFLKVDYLFVAVGVVGGACTD--VEQTFLQVTKFNKREQLLDLLRTI-- 431
Query: 702 GS-RVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759
GS R ++F TKR D +A + + +IHGD+ Q ER+ L FRSGK P+LVAT
Sbjct: 432 GSERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATS 491
Query: 760 VAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFS-EQDSKYAADLVK 818
VA+RGLDI D++ V+N+D PN ++DYVHRI A +F+ + DS+ A LV
Sbjct: 492 VASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAVSFYDPDVDSQLARSLVG 551
Query: 819 VLEGANQHVPPEVRDMA 835
+L A Q VP + + A
Sbjct: 552 ILAKAQQEVPSWLEESA 568
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 617 (222.3 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 146/403 (36%), Positives = 240/403 (59%)
Query: 448 TDLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGK 507
+D+ PA + + + +L + ++ +G+ TPIQ + PI + GRD++A A+TGSGK
Sbjct: 279 SDVPPAILTFEEANLCDSLAK--NVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGK 336
Query: 508 TLGYLIP--AFILLRQLHNNP---RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTC 562
T +L+P A ++++ + ++ P +++APTREL QI +A KF + +
Sbjct: 337 TAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVV 396
Query: 563 LYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEP 622
+YGG L+++ +G +I+ ATPGRL D++ +KI ++ LVLDEADRMLDMGF
Sbjct: 397 IYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFRE 456
Query: 623 QIRKIVNE--MPP--HRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAIT 677
I ++ MP RQTLM++AT+P ++ +A ++L + + V +G V ++ +
Sbjct: 457 DIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSD--VE 514
Query: 678 QHVEVVPQMEKERRLQQILRAQERGS-RVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDK 735
Q V V + K+ +L +IL QE GS R ++F TK+ D +A + + + +IHGD+
Sbjct: 515 QMVIEVDEFGKKDKLMEIL--QEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDR 572
Query: 736 SQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXX 795
Q ER+ L FR+G+ P++VAT VAARGLDI+++ VIN+D P+ +++YVHRI
Sbjct: 573 EQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRC 632
Query: 796 XXXXVAHTFFSEQ---DSKYAADLVKVLEGANQHVPPEVRDMA 835
A +FF ++ + + A LVKVL A+Q VP + ++A
Sbjct: 633 GNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEVA 675
Score = 39 (18.8 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 235 QGKQFGGQQDYNKAAITKREEAEFP-PGNQT---GFSPSNFQQTGASSSQNLPGGTNSMK 290
+GK GG + K + K+E +F N+T FQ+ G + + G ++
Sbjct: 94 RGKGRGGFGTFGKDSNGKQESGDFTNDDNRTIDDNRRRGGFQRRGGFNDETSGRGRRGVR 153
Query: 291 TG 292
G
Sbjct: 154 GG 155
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 158/394 (40%), Positives = 226/394 (57%)
Query: 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508
D PA + + ++ TL + AG++ TP+Q PI L GRD++A A+TGSGKT
Sbjct: 260 DAPPAILTFEETDLCQTLNN--DITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKT 317
Query: 509 LGYLIPAFI-LLRQLHNNPR----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCL 563
+L+P ++R R P +++APTREL QI EA KF + + +
Sbjct: 318 AAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCVRPVVI 377
Query: 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQ 623
YGG G +R++ QG +I+ ATPGRL DI+ +KI GQ+ LVLDEADRMLDMGF P+
Sbjct: 378 YGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPE 437
Query: 624 IRKIVN--EMPP--HRQTLMYTATWPK-DVRKIASDLLVNPV--QVNIGNVDELAANKAI 676
++K+++ MP RQTLM++AT+P+ + + A + L N V +G V ++ +
Sbjct: 438 MKKLISFPGMPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGGACSD--V 495
Query: 677 TQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDK 735
Q V V Q K +L +ILR R ++F TK+ D +A + + +IHGD+
Sbjct: 496 QQTVLQVGQYSKREKLVEILRNIGE-ERTMVFVETKKKADFIATFLCQEKISTTSIHGDR 554
Query: 736 SQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXX 795
Q ER+ L FR GK P+LVAT VAARGLDI++++ VIN+D P+ +++YVHRI
Sbjct: 555 EQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRC 614
Query: 796 XXXXVAHTFFS-EQDSKYAADLVKVLEGANQHVP 828
A +FF E DS A LVKVL A Q P
Sbjct: 615 GNTGKAISFFDPEPDSHLAQPLVKVLSDAQQGCP 648
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 377 (137.8 bits), Expect = 2.6e-62, Sum P(2) = 2.6e-62
Identities = 79/180 (43%), Positives = 109/180 (60%)
Query: 463 SATLPRVASM-HSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ 521
S+ P + + G+ PTPIQ Q PI LQ RDI+ +A+TGSGKT +LIP + +
Sbjct: 395 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 454
Query: 522 LHNNPR-----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576
L R GP ++LAPTRELA QI++E KFG+ + + GG + Q L
Sbjct: 455 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 514
Query: 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636
G +IV+ATPGRL D+LE + + + + +VLDEADRM+DMGFEP ++KI+ MP Q
Sbjct: 515 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 574
Score = 343 (125.8 bits), Expect = 2.6e-62, Sum P(2) = 2.6e-62
Identities = 75/200 (37%), Positives = 118/200 (59%)
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
+RQT+M+TAT P V ++A L P V IG+ + ++ + Q V ++ + EK ++L
Sbjct: 598 YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGK--PHERVEQKVFLMSESEKRKKLL 655
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752
IL Q +IIF + K+ CD LA+S+ + + A +HG K Q +R++ L+ ++G
Sbjct: 656 AILE-QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAK 714
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
ILVATDVA RG+DI+D+ +V+NYD +EDY+HRI VA TF +++DS
Sbjct: 715 DILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAV 774
Query: 813 AADLVK-VLEGANQHVPPEV 831
+L + +LE PPE+
Sbjct: 775 FYELKQAILESPVSSCPPEL 794
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 377 (137.8 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 79/180 (43%), Positives = 109/180 (60%)
Query: 463 SATLPRVASM-HSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ 521
S+ P + + G+ PTPIQ Q PI LQ RDI+ +A+TGSGKT +LIP + +
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455
Query: 522 LHNNPR-----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576
L R GP ++LAPTRELA QI++E KFG+ + + GG + Q L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515
Query: 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636
G +IV+ATPGRL D+LE + + + + +VLDEADRM+DMGFEP ++KI+ MP Q
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 343 (125.8 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 75/200 (37%), Positives = 118/200 (59%)
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
+RQT+M+TAT P V ++A L P V IG+ + ++ + Q V ++ + EK ++L
Sbjct: 599 YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGK--PHERVEQKVFLMSESEKRKKLL 656
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752
IL Q +IIF + K+ CD LA+S+ + + A +HG K Q +R++ L+ ++G
Sbjct: 657 AILE-QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAK 715
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
ILVATDVA RG+DI+D+ +V+NYD +EDY+HRI VA TF +++DS
Sbjct: 716 DILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAV 775
Query: 813 AADLVK-VLEGANQHVPPEV 831
+L + +LE PPE+
Sbjct: 776 FYELKQAILESPVSSCPPEL 795
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 377 (137.8 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 79/180 (43%), Positives = 109/180 (60%)
Query: 463 SATLPRVASM-HSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ 521
S+ P + + G+ PTPIQ Q PI LQ RDI+ +A+TGSGKT +LIP + +
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455
Query: 522 LHNNPR-----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576
L R GP ++LAPTRELA QI++E KFG+ + + GG + Q L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515
Query: 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636
G +IV+ATPGRL D+LE + + + + +VLDEADRM+DMGFEP ++KI+ MP Q
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 343 (125.8 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 75/200 (37%), Positives = 118/200 (59%)
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
+RQT+M+TAT P V ++A L P V IG+ + ++ + Q V ++ + EK ++L
Sbjct: 599 YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGK--PHERVEQKVFLMSESEKRKKLL 656
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752
IL Q +IIF + K+ CD LA+S+ + + A +HG K Q +R++ L+ ++G
Sbjct: 657 AILE-QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAK 715
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
ILVATDVA RG+DI+D+ +V+NYD +EDY+HRI VA TF +++DS
Sbjct: 716 DILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAV 775
Query: 813 AADLVK-VLEGANQHVPPEV 831
+L + +LE PPE+
Sbjct: 776 FYELKQAILESPVSSCPPEL 795
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 377 (137.8 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 79/180 (43%), Positives = 109/180 (60%)
Query: 463 SATLPRVASM-HSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ 521
S+ P + + G+ PTPIQ Q PI LQ RDI+ +A+TGSGKT +LIP + +
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455
Query: 522 LHNNPR-----NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576
L R GP ++LAPTRELA QI++E KFG+ + + GG + Q L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515
Query: 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636
G +IV+ATPGRL D+LE + + + + +VLDEADRM+DMGFEP ++KI+ MP Q
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 343 (125.8 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 75/200 (37%), Positives = 118/200 (59%)
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
+RQT+M+TAT P V ++A L P V IG+ + ++ + Q V ++ + EK ++L
Sbjct: 599 YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGK--PHERVEQKVFLMSESEKRKKLL 656
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752
IL Q +IIF + K+ CD LA+S+ + + A +HG K Q +R++ L+ ++G
Sbjct: 657 AILE-QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAK 715
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
ILVATDVA RG+DI+D+ +V+NYD +EDY+HRI VA TF +++DS
Sbjct: 716 DILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAV 775
Query: 813 AADLVK-VLEGANQHVPPEV 831
+L + +LE PPE+
Sbjct: 776 FYELKQAILESPVSSCPPEL 795
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 142/379 (37%), Positives = 225/379 (59%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPRNGPTVLVL 535
F P+ IQ+Q P L GRD++ IAKTGSGKTL Y++P ++ Q + GP L+L
Sbjct: 314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLIL 373
Query: 536 APTRELATQIQDEANKFG-RSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL 594
+PTRELA QI+ E F R++ L C YGG+ Q+ EL +G +I+V TPGR+ D+L
Sbjct: 374 SPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLL 433
Query: 595 EMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
++ + + +VLDEADRM D+GFEPQ+ KI+ ++ P RQT++++AT+P+ + +
Sbjct: 434 AANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETL 493
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHV-------EVVPQMEKER--RLQQIL---RAQ 699
A +L +PV + +G + +A I Q V E + +++R +L IL + +
Sbjct: 494 AKQILTDPVVIIVGGISVVAPE--IKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIE 551
Query: 700 ERGSRVIIFCSTKRLCDQL-ARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPI--LV 756
S++++F + D+L A + + AIAIHG K Q +R + + +F S S I L+
Sbjct: 552 HPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILI 611
Query: 757 ATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADL 816
AT +AARGLD++++ +VIN+D PN +EDYVHR+ A TF S K +L
Sbjct: 612 ATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNL 671
Query: 817 VKVLEGANQHVPPEVRDMA 835
VK L+ ++ + P++ ++A
Sbjct: 672 VKALKLSHSDIDPKLEEIA 690
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 142/379 (37%), Positives = 225/379 (59%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR-QLHNNPRNGPTVLVL 535
F P+ IQ+Q P L GRD++ IAKTGSGKTL Y++P ++ Q + GP L+L
Sbjct: 314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLIL 373
Query: 536 APTRELATQIQDEANKFG-RSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL 594
+PTRELA QI+ E F R++ L C YGG+ Q+ EL +G +I+V TPGR+ D+L
Sbjct: 374 SPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLL 433
Query: 595 EMKK---IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
++ + + +VLDEADRM D+GFEPQ+ KI+ ++ P RQT++++AT+P+ + +
Sbjct: 434 AANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETL 493
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHV-------EVVPQMEKER--RLQQIL---RAQ 699
A +L +PV + +G + +A I Q V E + +++R +L IL + +
Sbjct: 494 AKQILTDPVVIIVGGISVVAPE--IKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIE 551
Query: 700 ERGSRVIIFCSTKRLCDQL-ARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPI--LV 756
S++++F + D+L A + + AIAIHG K Q +R + + +F S S I L+
Sbjct: 552 HPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILI 611
Query: 757 ATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADL 816
AT +AARGLD++++ +VIN+D PN +EDYVHR+ A TF S K +L
Sbjct: 612 ATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNL 671
Query: 817 VKVLEGANQHVPPEVRDMA 835
VK L+ ++ + P++ ++A
Sbjct: 672 VKALKLSHSDIDPKLEEIA 690
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 140/358 (39%), Positives = 198/358 (55%)
Query: 474 SAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVL 533
+ G++ PTP+QA P AL+ D++A A+TG+GKT +++PA L P GP VL
Sbjct: 18 ACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPPQGPGRGPRVL 77
Query: 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDI 593
VL PTRELA Q+ D +G R+ + GG P QLR L D +VATPGRL D+
Sbjct: 78 VLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAPVDFIVATPGRLVDL 137
Query: 594 LEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIAS 653
L+ + +D ++ LLVLDEADRMLDMGF + +I P RQTL++TAT + ++A
Sbjct: 138 LDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTATMDSAMARLAG 197
Query: 654 DLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKR 713
LL P +++I ++ I Q + V + + RL + L E R IIF +TKR
Sbjct: 198 RLLREPERIDIAGTK--TTHEHIEQRLHVADDLHHKNRLLRHLITDESLRRAIIFSATKR 255
Query: 714 LCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772
+ LA + + A A+HGD Q R+ + + G+ +LVATDVAARGLD+ I
Sbjct: 256 DAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAARGLDVTGISH 315
Query: 773 VINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGA--NQHVP 828
VIN+D P EDYVHRI +A +F S + Y A + + + H+P
Sbjct: 316 VINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIERYIGQTLPEHHIP 373
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 370 (135.3 bits), Expect = 9.3e-62, Sum P(2) = 9.3e-62
Identities = 76/170 (44%), Positives = 105/170 (61%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR---- 527
+ G+ PTPIQ Q PI LQ RDI+ +A+TGSGKT +LIP + + L R
Sbjct: 393 IEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDS 452
Query: 528 -NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
GP ++LAPTRELA QI++E KFG+ + + GG + Q L G +IV+AT
Sbjct: 453 DQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIAT 512
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636
PGRL D+LE + + + + +VLDEADRM+DMGFEP ++KI+ +P Q
Sbjct: 513 PGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQ 562
Score = 345 (126.5 bits), Expect = 9.3e-62, Sum P(2) = 9.3e-62
Identities = 75/200 (37%), Positives = 119/200 (59%)
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
+RQT+M+TAT P V ++A L P V IG+ + ++ + Q V ++ + EK ++L
Sbjct: 586 YRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGK--PHERVEQKVILMSEGEKRKKLL 643
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752
++L A +IIF + K+ CD LA+S+ + + A +HG K Q +R++ L+ ++G
Sbjct: 644 EVL-ASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAK 702
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
ILVATDVA RG+DI+D+ +V+NYD +EDY+HRI VA TF +++DS
Sbjct: 703 DILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSV 762
Query: 813 AADLVK-VLEGANQHVPPEV 831
DL + +LE PPE+
Sbjct: 763 FYDLKQAILESPVSTCPPEL 782
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 148/381 (38%), Positives = 214/381 (56%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNN 525
P + ++ G PTPIQ Q P+ L GRD++ IA TGSGKTL +++P ++ L++
Sbjct: 156 PVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMM 215
Query: 526 P---RNGPTVLVLAPTRELATQIQDEANKF-------GRSSRLSCTCLYGGAPKGPQLRE 575
P GP L++ P+RELA Q + +F G S C+ GG QL
Sbjct: 216 PIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCI-GGIDMRSQLEV 274
Query: 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHR 635
+ +G IVVATPGRL D+L KK+ L LDEADR++D+GFE IR++ + R
Sbjct: 275 VKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQR 334
Query: 636 QTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQI 695
QTL+++AT P ++ A LV PV VN+G AAN + Q VE V Q K L +
Sbjct: 335 QTLLFSATMPTKIQIFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLEC 392
Query: 696 LRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPI 754
L Q+ V+IFC K D + + + A+AIHG K Q +R++ ++ F++GK +
Sbjct: 393 L--QKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDV 450
Query: 755 LVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAA 814
LVATDVA++GLD DI+ VINYD P +E+YVHRI +A TF ++ S+
Sbjct: 451 LVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTL 510
Query: 815 -DLVKVLEGANQHVPPEVRDM 834
DL +L+ A Q +PP + ++
Sbjct: 511 LDLKHLLQEAKQRIPPVLAEL 531
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 149/388 (38%), Positives = 216/388 (55%)
Query: 461 EVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-L 519
E+ P + + G P+PIQ Q P+ L GRD++ IA TGSGKTL + +P + L
Sbjct: 226 EMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFAL 285
Query: 520 RQLHNNP---RNGPTVLVLAPTRELATQIQDEANKF-------GRSSRLSCTCLYGGAPK 569
+ P GP L+L P+RELA Q D N F G +L GG
Sbjct: 286 EEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDL 345
Query: 570 GPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVN 629
Q +G +++ATPGRL D+L KKI+F L LDEADR++D+GFE IR +++
Sbjct: 346 REQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVLD 405
Query: 630 EMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE 689
RQTL+++AT PK +++ A LV PV+VN+G AAN +TQ VE V + E
Sbjct: 406 NFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAG--AANLNVTQEVEFV---KPE 460
Query: 690 RRLQQILRA-QERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQF 747
++ +L Q+ V+IFC K+ D + + + A++IHGDKSQ ER+ + F
Sbjct: 461 AKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAF 520
Query: 748 RSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSE 807
R GK +LVATDVA++GLD +I+ VIN+D P +E+Y+HRI VA TF ++
Sbjct: 521 REGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINK 580
Query: 808 QDSK-YAADLVKVLEGANQHVPPEVRDM 834
+++ DL +L A Q VPP + ++
Sbjct: 581 NNTESLLLDLKYLLIEAKQKVPPALLEI 608
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 130/324 (40%), Positives = 200/324 (61%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP 526
P + ++ G+++P+PIQ Q P L G+D++A A+TG+GKT G+ +P LL +
Sbjct: 11 PILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVR 70
Query: 527 RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
N L+L PTRELA QIQD +GR L ++GG PQ++ + +GADI+VAT
Sbjct: 71 ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVAT 130
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
PGRL D+ + F Q+ +LVLDEADRMLDMGF I KI+ +P RQ L+++AT+
Sbjct: 131 PGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFST 190
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVI 706
++R++A L+ NPV++++ + A + + Q + +K L ++++ + +V+
Sbjct: 191 EIRELAKGLVNNPVEISVSPANSTA--RTVEQCIYPADVKKKPDMLVKLVK-EGNWQQVL 247
Query: 707 IFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
+F TK ++LA + + A AIHG+KSQG R L F++G+ ILVATD+AARG+
Sbjct: 248 VFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGI 307
Query: 766 DIKDIRVVINYDFPNGVEDYVHRI 789
DI + V+N++ P EDYVHRI
Sbjct: 308 DIPQLPQVVNFELPKIAEDYVHRI 331
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 130/324 (40%), Positives = 200/324 (61%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP 526
P + ++ G+++P+PIQ Q P L G+D++A A+TG+GKT G+ +P LL +
Sbjct: 11 PILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVR 70
Query: 527 RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
N L+L PTRELA QIQD +GR L ++GG PQ++ + +GADI+VAT
Sbjct: 71 ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVAT 130
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
PGRL D+ + F Q+ +LVLDEADRMLDMGF I KI+ +P RQ L+++AT+
Sbjct: 131 PGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFST 190
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVI 706
++R++A L+ NPV++++ + A + + Q + +K L ++++ + +V+
Sbjct: 191 EIRELAKGLVNNPVEISVSPANSTA--RTVEQCIYPADVKKKPDMLVKLVK-EGNWQQVL 247
Query: 707 IFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
+F TK ++LA + + A AIHG+KSQG R L F++G+ ILVATD+AARG+
Sbjct: 248 VFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGI 307
Query: 766 DIKDIRVVINYDFPNGVEDYVHRI 789
DI + V+N++ P EDYVHRI
Sbjct: 308 DIPQLPQVVNFELPKIAEDYVHRI 331
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 146/369 (39%), Positives = 206/369 (55%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
+A + + G+ PTPIQAQ P L+G D++ +A+TG+GKT Y +P +++++ + PR
Sbjct: 13 MAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALP---VIQKMLSTPRG 69
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
LVLAPTRELA QI + G+ +R+ +YGG Q+R L G D+VVA PG
Sbjct: 70 RVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVACPG 129
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM-PPHRQTLMYTATWPKD 647
RL D + ID V L++DEADRM DMGF+P I+ I+ + PH QTL+++AT P +
Sbjct: 130 RLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPH-QTLLFSATMPPE 188
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVII 707
VRK+ + NPV + IG A +++ V V +K L +IL+ E S V+I
Sbjct: 189 VRKLTLETQTNPVTIQIGTQ---APASSVSHSVYPVKNHQKTPLLIEILKTTETKS-VLI 244
Query: 708 FCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
F TK + LA I R F ++ G+ SQ R V+ FR G ILVATD+AARGLD
Sbjct: 245 FARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLD 304
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQH 826
I I VINYD P+ EDY HRI A + + +D D+ K++ Q
Sbjct: 305 IDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKLINSPIQR 364
Query: 827 VPPEVRDMA 835
+ + D A
Sbjct: 365 LRVDGFDYA 373
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 135/330 (40%), Positives = 201/330 (60%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN-NP- 526
V ++ +AG++ PTP+Q + P LQGRD++ A+TG+GKT G+ +P IL R N +P
Sbjct: 13 VGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALP--ILERLFPNGHPD 70
Query: 527 ---RNGPT---VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGA 580
R+GP VLVL PTRELA Q+ D + R + C++GG PQ++ + +G
Sbjct: 71 KSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAMARGV 130
Query: 581 DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMY 640
D++VA PGRL D+ +D V +LVLDEADRMLDMGF ++K++ +P RQ L++
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLF 190
Query: 641 TATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQE 700
+AT+ KD+ +A LL NP ++ + + + I Q V +P K L ++ A
Sbjct: 191 SATFSKDITDLAGKLLHNPERIEVTPPNTTV--ERIEQRVFRLPASHKRALLAHLITAGA 248
Query: 701 RGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759
+V++F TK ++LA + ++ A+AIHG+KSQ R L F++G+ ILVATD
Sbjct: 249 -WEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATD 307
Query: 760 VAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
+AARGLDI + V+N++ PN EDYVHRI
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRI 337
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 385 (140.6 bits), Expect = 8.9e-61, Sum P(3) = 8.9e-61
Identities = 74/162 (45%), Positives = 106/162 (65%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN-----GP 530
G+ PTPIQ Q PI LQ RD++ +A+TGSGKT +L+P + + L R GP
Sbjct: 320 GYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGP 379
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
+++APTRELA QI++E NKFG+ + + GGA + Q +L G ++V+ATPGRL
Sbjct: 380 YAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRL 439
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632
D+LE + + Q + ++LDEADRMLDMGFEP ++K++ MP
Sbjct: 440 LDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481
Score = 323 (118.8 bits), Expect = 8.9e-61, Sum P(3) = 8.9e-61
Identities = 73/213 (34%), Positives = 116/213 (54%)
Query: 621 EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHV 680
E + K + +RQT+M+TAT + ++A L P V+IG+ + + + Q V
Sbjct: 495 EEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGK--PTERVEQVV 552
Query: 681 EVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGE 739
+VP+ K ++L ++L +Q + +IIF + K+ D L++ + + F +HG K Q +
Sbjct: 553 YMVPEDRKRKKLVEVLESQFQPP-IIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQ 611
Query: 740 RDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXX 799
R++ L + G S ILVATDVA RG+D+KD+ +V+NYD +EDY HRI
Sbjct: 612 REYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHG 671
Query: 800 VAHTFFSEQDSKYAADLVKVL-EGANQHVPPEV 831
A TF + D+ DL +VL E PPE+
Sbjct: 672 KAITFLTPDDTAVYFDLKQVLVESPVSSCPPEL 704
Score = 37 (18.1 bits), Expect = 8.9e-61, Sum P(3) = 8.9e-61
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 243 QDYNKAAITKREEAEFPPGNQTG 265
QDYNK ++ E F G+ G
Sbjct: 194 QDYNKLYQSRHEIQFFGRGSVAG 216
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 126/322 (39%), Positives = 194/322 (60%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP--RN 528
++ G+ +P+PIQAQ P + GRD++A A+TG+GKT G+ +P L N N
Sbjct: 20 AVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSSN 79
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
L+L PTRELA QI + +G+ L ++GG PQ+ L QG D++VATPG
Sbjct: 80 NVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDVLVATPG 139
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
RL D+ + + F Q+ + +LDEADRMLDMGF I+K++ +P RQ L+++AT+ ++
Sbjct: 140 RLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSATFSPEI 199
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIF 708
R +A ++ NP+++++ + + A K +TQ + V + K L +++ + +V++F
Sbjct: 200 RALAKGMVNNPLEISV-DAENSTAEK-VTQWLTAVDKKRKPAVLTHLIK-ENNWQQVLVF 256
Query: 709 CSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
TK ++L + + A AIHG+KSQG R L F+ G ILVATD+AARG+DI
Sbjct: 257 TKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAARGIDI 316
Query: 768 KDIRVVINYDFPNGVEDYVHRI 789
+ V+N+D PN EDYVHRI
Sbjct: 317 DLLPQVVNFDLPNVPEDYVHRI 338
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 601 (216.6 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 150/376 (39%), Positives = 198/376 (52%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNNP---RNGPT 531
G PTPIQ Q P L GRD++ IA TGSGKTL + +P + L Q P R GP
Sbjct: 227 GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 286
Query: 532 VLVLAPTRELATQIQDEANKFGR------SSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
L++ P+RELA Q + R S L C GG Q+ + G ++VA
Sbjct: 287 GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVA 346
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+L+ K + L LDEADRM+DMGFE IR I + RQTL+++AT P
Sbjct: 347 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 406
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K ++ A LV PV +N+G AA+ + Q VE V + K L + L Q+ V
Sbjct: 407 KKIQNFAKSALVKPVTINVGRAG--AASLDVIQEVEYVKEEAKMVYLLECL--QKTPPPV 462
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF K D + + + A+AIHG K Q ER + FR GK +LVATDVA++G
Sbjct: 463 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 522
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLEGA 823
LD I+ VINYD P +E+YVHRI +A TF ++ D DL +L A
Sbjct: 523 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEA 582
Query: 824 NQHVPPEVRDMALRCG 839
Q VPP ++ L CG
Sbjct: 583 KQKVPPVLQ--VLHCG 596
Score = 37 (18.1 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 402 MGGAAPGQATGLNAVAGHAMHGMYSHAGSFPNNAMMR 438
M + P + G V+ G S + SFP+ + R
Sbjct: 1 MEDSEPERKVGARPVSARVAGGSESRSLSFPHVYLQR 37
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 136/353 (38%), Positives = 200/353 (56%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ S G++ TPIQAQ+ P L G D++ KTGSGKT + + LL +L + R
Sbjct: 15 NLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLG---LLNKL-DVKRFRI 70
Query: 531 TVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
LVL PTRELA Q+ E R + L GG P GPQ+ L+ GA I+V TPGR
Sbjct: 71 QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGR 130
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649
+ D L+ ++D +++LVLDEADRML+MGF+PQ+ I+ + P RQTL+++AT+P+ ++
Sbjct: 131 IVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQ 190
Query: 650 KIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFC 709
IA ++ NPV V E I QH + + + Q+L + + ++FC
Sbjct: 191 SIAKQIMYNPVMVKAAVTHE---KNTIEQHFYQLDDDKSRMQALQLLLLEHKPESAVVFC 247
Query: 710 STKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK 768
+TKR ++A + G F +A+HGD Q +RD L QF + + +LVATDVAARGLDI
Sbjct: 248 NTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDID 307
Query: 769 DIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
+ V NY E ++HRI A+TF+++QD A L + L+
Sbjct: 308 ALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLD 360
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 136/353 (38%), Positives = 200/353 (56%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ S G++ TPIQAQ+ P L G D++ KTGSGKT + + LL +L + R
Sbjct: 15 NLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLG---LLNKL-DVKRFRI 70
Query: 531 TVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
LVL PTRELA Q+ E R + L GG P GPQ+ L+ GA I+V TPGR
Sbjct: 71 QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGR 130
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649
+ D L+ ++D +++LVLDEADRML+MGF+PQ+ I+ + P RQTL+++AT+P+ ++
Sbjct: 131 IVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQ 190
Query: 650 KIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFC 709
IA ++ NPV V E I QH + + + Q+L + + ++FC
Sbjct: 191 SIAKQIMYNPVMVKAAVTHE---KNTIEQHFYQLDDDKSRMQALQLLLLEHKPESAVVFC 247
Query: 710 STKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK 768
+TKR ++A + G F +A+HGD Q +RD L QF + + +LVATDVAARGLDI
Sbjct: 248 NTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDID 307
Query: 769 DIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
+ V NY E ++HRI A+TF+++QD A L + L+
Sbjct: 308 ALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLD 360
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 142/377 (37%), Positives = 218/377 (57%)
Query: 462 VSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ 521
+SA L R ++ G+ PTP+Q Q P+ LQ RD++ A+TG+GKT G+ +P +L R
Sbjct: 17 LSAELLR--AIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLP--LLQRL 72
Query: 522 LHNNP---RNG-PTV--LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575
+ P R+ P + L+L PTRELA Q+ + +G+ L T ++GG PQ+
Sbjct: 73 FVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINH 132
Query: 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHR 635
L +G DI+VATPGRL D++ ++ +V VLDEADRMLDMGF P IR+I+ +P R
Sbjct: 133 LRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESR 192
Query: 636 QTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQI 695
Q L+++AT+ K+++++ LL +P + + + AA IT V V + K R L
Sbjct: 193 QNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAAR--ITHVVHPVDRQRK-RELLSF 249
Query: 696 LRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPI 754
+ + +V++F TK ++L++ + + + AIHG+KSQ R L QF+ GK +
Sbjct: 250 MIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRV 309
Query: 755 LVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAA 814
LVATDVAARGLDI + VIN++ P+ +DYVHR+ VA + S + +
Sbjct: 310 LVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLR 369
Query: 815 DLVKVLEGANQHVPPEV 831
D+ K+L+ +P EV
Sbjct: 370 DIEKLLQSK---MPQEV 383
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 142/377 (37%), Positives = 218/377 (57%)
Query: 462 VSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ 521
+SA L R ++ G+ PTP+Q Q P+ LQ RD++ A+TG+GKT G+ +P +L R
Sbjct: 17 LSAELLR--AIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLP--LLQRL 72
Query: 522 LHNNP---RNG-PTV--LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575
+ P R+ P + L+L PTRELA Q+ + +G+ L T ++GG PQ+
Sbjct: 73 FVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINH 132
Query: 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHR 635
L +G DI+VATPGRL D++ ++ +V VLDEADRMLDMGF P IR+I+ +P R
Sbjct: 133 LRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESR 192
Query: 636 QTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQI 695
Q L+++AT+ K+++++ LL +P + + + AA IT V V + K R L
Sbjct: 193 QNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAAR--ITHVVHPVDRQRK-RELLSF 249
Query: 696 LRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPI 754
+ + +V++F TK ++L++ + + + AIHG+KSQ R L QF+ GK +
Sbjct: 250 MIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRV 309
Query: 755 LVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAA 814
LVATDVAARGLDI + VIN++ P+ +DYVHR+ VA + S + +
Sbjct: 310 LVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLR 369
Query: 815 DLVKVLEGANQHVPPEV 831
D+ K+L+ +P EV
Sbjct: 370 DIEKLLQSK---MPQEV 383
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 139/355 (39%), Positives = 204/355 (57%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP 526
P + ++ S G++ TPIQA + P+ L G+D++A AKTGSGKT + I L L
Sbjct: 14 PMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDALSFRV 73
Query: 527 RNGPTVLVLAPTRELATQIQDEANKFGR-SSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
+ LVL PTRELA Q+ E + R + + + GG P GPQL L+ GA +V+
Sbjct: 74 Q----ALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLEHGAHVVIG 129
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D L +D + LVLDEADRMLDMGF+ I ++ PP RQTL+++AT+P
Sbjct: 130 TPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLFSATYP 189
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
+ +++ + PV+V+ VDE+ AI Q V ++ +++IL R
Sbjct: 190 DSIAAMSAGVQREPVEVS---VDEVHGEGAIEQVFYEVDSGQRIEAVERIL-GHYRPESA 245
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IFC+TK C ++A ++ R + A+AIHGD Q ERD VL +F + + +LVATDVAARG
Sbjct: 246 LIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAARG 305
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKV 819
LDIK++ VINY+ E + HRI +A + + ++S+ A + V
Sbjct: 306 LDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAAIADV 360
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 133/354 (37%), Positives = 203/354 (57%)
Query: 461 EVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR 520
E+ P + G+ SPTP+QA T P L GRD++A A TGSGKT + +P L
Sbjct: 13 ELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLS 72
Query: 521 QLHNNPRNGPTV--LVLAPTRELATQIQDEANKFGR--SSRLSCTCLYGGAPKGPQLREL 576
+ + ++ V LVL PTRELA Q+ D + + +L +GG Q++ L
Sbjct: 73 EAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSL 132
Query: 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636
GAD++VATPGRL D+L + QVS VLDEADRML +GF ++ +++ +P +Q
Sbjct: 133 RAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQ 192
Query: 637 TLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL 696
TL+++AT+P++VR + + LL P++ ++ + E I Q V V + +K L ++
Sbjct: 193 TLLFSATFPEEVRALTTKLLHQPLEYHLQSEQE----STIEQRVITVNREQKTALLAHLI 248
Query: 697 RAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPIL 755
+ Q + S+ +IF S K C+ LA+ + R A HGDK+QG R VL+ F++G+ +L
Sbjct: 249 K-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVL 307
Query: 756 VATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQD 809
+ATD+AARG+DI + VVIN+D P DY+HRI +A T S ++
Sbjct: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 133/354 (37%), Positives = 203/354 (57%)
Query: 461 EVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR 520
E+ P + G+ SPTP+QA T P L GRD++A A TGSGKT + +P L
Sbjct: 13 ELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLS 72
Query: 521 QLHNNPRNGPTV--LVLAPTRELATQIQDEANKFGR--SSRLSCTCLYGGAPKGPQLREL 576
+ + ++ V LVL PTRELA Q+ D + + +L +GG Q++ L
Sbjct: 73 EAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSL 132
Query: 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636
GAD++VATPGRL D+L + QVS VLDEADRML +GF ++ +++ +P +Q
Sbjct: 133 RAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQ 192
Query: 637 TLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL 696
TL+++AT+P++VR + + LL P++ ++ + E I Q V V + +K L ++
Sbjct: 193 TLLFSATFPEEVRALTTKLLHQPLEYHLQSEQE----STIEQRVITVNREQKTALLAHLI 248
Query: 697 RAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPIL 755
+ Q + S+ +IF S K C+ LA+ + R A HGDK+QG R VL+ F++G+ +L
Sbjct: 249 K-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVL 307
Query: 756 VATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQD 809
+ATD+AARG+DI + VVIN+D P DY+HRI +A T S ++
Sbjct: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 588 (212.0 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 137/331 (41%), Positives = 202/331 (61%)
Query: 463 SATLPR--VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR 520
S LP ++++ S GF+S T IQA T P L G+D++ A+TG+GKT + +PA L
Sbjct: 19 SLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPA---LA 75
Query: 521 QLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR-LSCTCLYGGAPKGPQLRELDQG 579
++ + + P ++VLAPTRELA Q+ + FG+ + L LYGG GPQ ++L++G
Sbjct: 76 KIDTSIKK-PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERG 134
Query: 580 ADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLM 639
A +VV TPGRL D L K + ++ + VLDEAD ML+MGF I+ I++ +P Q +
Sbjct: 135 AQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCL 194
Query: 640 YTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ 699
++AT P +RKIA+ L +P + + V + AN ITQ+ V + K L++I
Sbjct: 195 FSATMPPAIRKIANRFLKDPEHIKVAAVKKAKAN--ITQYAWKVSGITKMTALERIAEVV 252
Query: 700 ERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVAT 758
E + +IIF T+ +A + R + A+A++GD +Q +R+ ++Q +SGKS ILVAT
Sbjct: 253 EYDA-MIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVAT 311
Query: 759 DVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
DV ARGLDI I +VINYD P E YVHRI
Sbjct: 312 DVVARGLDIPRISLVINYDLPGDNEAYVHRI 342
Score = 40 (19.1 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 773 VINYDFPNGVED 784
V+NYD PN ++D
Sbjct: 377 VLNYDLPN-IQD 387
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 134/357 (37%), Positives = 205/357 (57%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF---ILLRQLHNN 525
V ++ S G PIQ A++GRD++ A+TG+GKTL + IP I H
Sbjct: 116 VKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGR 175
Query: 526 PRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
RN P LVLAPTRELA Q++ E + S L CLYGG P G Q+R+LD G D+ V
Sbjct: 176 GRN-PLCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMRQLDYGVDVAVG 232
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGR+ D+++ ++ +V +VLDEAD+ML +GF + I+ ++P RQ++M++AT P
Sbjct: 233 TPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMP 292
Query: 646 KDVRKIASDLLVNPVQVN-IGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR 704
+R + L NP+ V+ +G+ D+ A+ IT + + + + ++ +G +
Sbjct: 293 SWIRSLTKKYLNNPLTVDLVGDSDQKLAD-GITTYSIIADSYGRASIIGPLVTEHAKGGK 351
Query: 705 VIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
I+F TKR D+L+ ++ R+F A+HGD SQ +R+ L FR G ILVATDVAARG
Sbjct: 352 CIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARG 411
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
LD+ ++ ++I+Y+ PN E +VHR A +S+ S+ VK++E
Sbjct: 412 LDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSR----AVKIIE 464
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 349 (127.9 bits), Expect = 3.7e-59, Sum P(2) = 3.7e-59
Identities = 74/165 (44%), Positives = 99/165 (60%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQL----HNNPR 527
+ + P+ IQ P+ LQ +D++ IA+TGSGKT ++IP I + +L +N
Sbjct: 264 LKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMH 323
Query: 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
GP +VLAPTRELA QIQ E NKF C + GG Q ++ QGA IVVATP
Sbjct: 324 LGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATP 383
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632
GRL D LE + Q + +V+DEADRMLDMGFE + KI++ +P
Sbjct: 384 GRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
Score = 338 (124.0 bits), Expect = 3.7e-59, Sum P(2) = 3.7e-59
Identities = 72/208 (34%), Positives = 118/208 (56%)
Query: 629 NEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEK 688
N RQT+M++AT P V +A L+ PV + IGN+ + A ++ + Q VE++ K
Sbjct: 444 NSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQ-AVDR-VEQRVEMISDDSK 501
Query: 689 E-RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQ 746
+ RR+++IL + +IIF + KR + +A+ + + A+ +HG KSQ +R+ + Q
Sbjct: 502 KWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQ 561
Query: 747 FRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFS 806
R+ + ILVATD+A RG+DI ++ +V+NY+ +EDY HRI A TF
Sbjct: 562 LRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLG 621
Query: 807 EQDSKYAADL-VKVLEGANQHVPPEVRD 833
+D+ DL V + A H+P E+R+
Sbjct: 622 PEDTDVYYDLRVLLSRSAKAHIPDELRN 649
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 135/364 (37%), Positives = 205/364 (56%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG 529
++ G ++PTPIQ Q P LQG+D++A A+TG+GKT + +P + Q N
Sbjct: 20 TLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANS 79
Query: 530 PTV--LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
+ LVL PTRELA Q+ D + + + L +YGG QL L G DI++ATP
Sbjct: 80 KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL D +K + G+V +LVLDEADRMLDMGF P +++++ + P RQTL ++AT+
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVII 707
++ +A ++ +P++V + + A + + Q V V + K R L L + +V++
Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTA--ETVQQMVYPVDKKRK-RELLSYLIGSKNWQQVLV 256
Query: 708 FCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
F T++ D LA + + A++I+GDKSQG R L+ F++GK L+ATDVAARGLD
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQH 826
I + V+NYD P EDYVHRI +A + S + + ++L N
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLL---NTR 373
Query: 827 VPPE 830
+P E
Sbjct: 374 LPQE 377
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 135/364 (37%), Positives = 205/364 (56%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG 529
++ G ++PTPIQ Q P LQG+D++A A+TG+GKT + +P + Q N
Sbjct: 20 TLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANS 79
Query: 530 PTV--LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
+ LVL PTRELA Q+ D + + + L +YGG QL L G DI++ATP
Sbjct: 80 KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL D +K + G+V +LVLDEADRMLDMGF P +++++ + P RQTL ++AT+
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVII 707
++ +A ++ +P++V + + A + + Q V V + K R L L + +V++
Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTA--ETVQQMVYPVDKKRK-RELLSYLIGSKNWQQVLV 256
Query: 708 FCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
F T++ D LA + + A++I+GDKSQG R L+ F++GK L+ATDVAARGLD
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQH 826
I + V+NYD P EDYVHRI +A + S + + ++L N
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLL---NTR 373
Query: 827 VPPE 830
+P E
Sbjct: 374 LPQE 377
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 151/376 (40%), Positives = 198/376 (52%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNNP---RNGPT 531
G PTPIQ Q P L GRD++ IA TGSGKTL + +P + L Q P R GP
Sbjct: 199 GILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 258
Query: 532 VLVLAPTRELATQIQDEANKFGR------SSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
L++ P+RELA Q + R S L C GG Q+ + G I+VA
Sbjct: 259 GLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVA 318
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+L+ K + L LDEADRM+DMGFE IR I + RQTL+++AT P
Sbjct: 319 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 378
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K ++ A LV PV +N+G AA+ + Q VE V + K L + L Q+ V
Sbjct: 379 KKIQNFAKSALVKPVTINVGRAG--AASLDVIQEVEYVKEEAKMVYLLECL--QKTPPPV 434
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF K D + + + A+AIHG K Q ER + FR GK +LVATDVA++G
Sbjct: 435 LIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 494
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLEGA 823
LD I+ VINYD P +E+YVHRI +A TF ++ D DL +L A
Sbjct: 495 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEA 554
Query: 824 NQHVPPEVRDMALRCG 839
Q VPP ++ L CG
Sbjct: 555 KQKVPPVLQ--VLHCG 568
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 133/368 (36%), Positives = 212/368 (57%)
Query: 459 RHEVSATLPRVA-SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI 517
R E + P + ++ G+ TPIQ Q P +G+D++A A+TG+GKT + +P
Sbjct: 2 RFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALP--- 58
Query: 518 LLRQLHNNP----RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573
+L+++ NP ++ VL+L PTRELA Q+ + + + S +YGG Q
Sbjct: 59 ILQKMVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQA 118
Query: 574 RELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPP 633
++L +GADI+VATPGRL + L + V LVLDEADRMLDMGF I+KI+ +
Sbjct: 119 QKLKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNK 178
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
RQ L+++AT+ V+K+A+++++ P QV + A+ ++Q V V Q K L
Sbjct: 179 KRQNLLFSATFSSAVKKLANEMMIKP-QVISADKQNTTAD-TVSQVVYPVEQRRKRELLS 236
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKS 752
+++ ++ +V++F +T+ D L + + + + +HG+K+QG R L +F SGK
Sbjct: 237 ELI-GKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKV 295
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
+LVAT+VAARGLDI + V+N+D P EDYVHRI VA +F S ++ +
Sbjct: 296 RVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERT 355
Query: 813 AADLVKVL 820
AD+ K++
Sbjct: 356 LADIEKLI 363
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 377 (137.8 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 77/162 (47%), Positives = 104/162 (64%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-----NGP 530
G+ PTPIQ Q PI LQ RDI+ +A+TGSGKTL +LIP ++ L R GP
Sbjct: 413 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGP 472
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
+++APTRELA QI++E KFG+ + + GG + Q L G +IV+ATPGRL
Sbjct: 473 YAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRL 532
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632
D+LE + + Q + +VLDEADRM+DMGFEP ++KI+ MP
Sbjct: 533 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 574
Score = 308 (113.5 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 72/200 (36%), Positives = 113/200 (56%)
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
+RQT+M+TAT P V ++A L P V IG+V + + Q V ++ + +K ++L
Sbjct: 601 YRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGK--PTERTEQIVYMMGENDKRKKLM 658
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752
+IL +++ VIIF + K+ D LA+ + + + + +HG K Q +R++ L +SG
Sbjct: 659 EIL-SRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAK 717
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
ILVATDVA RG+DIKD+ +VINYD +EDY HRI A +F ++ DS
Sbjct: 718 DILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDDSAL 777
Query: 813 AADLVKVLEGANQHV-PPEV 831
DL + + + PPE+
Sbjct: 778 FYDLKQCVSASPVSTCPPEL 797
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 150/376 (39%), Positives = 198/376 (52%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNNP---RNGPT 531
G PTPIQ Q P L GRD++ IA TGSGKTL + +P + L Q P R GP
Sbjct: 200 GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 259
Query: 532 VLVLAPTRELATQIQDEANKFGR------SSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
L++ P+RELA Q + R S L C GG Q+ + G ++VA
Sbjct: 260 GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVA 319
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+L+ K + L LDEADRM+DMGFE IR I + RQTL+++AT P
Sbjct: 320 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 379
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K ++ A LV PV +N+G AA+ + Q VE V + K L + L Q+ V
Sbjct: 380 KKIQNFAKSALVKPVTINVGRAG--AASLDVIQEVEYVKEEAKMVYLLECL--QKTPPPV 435
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF K D + + + A+AIHG K Q ER + FR GK +LVATDVA++G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLEGA 823
LD I+ VINYD P +E+YVHRI +A TF ++ D DL +L A
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEA 555
Query: 824 NQHVPPEVRDMALRCG 839
Q VPP ++ L CG
Sbjct: 556 KQKVPPVLQ--VLHCG 569
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 150/376 (39%), Positives = 198/376 (52%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNNP---RNGPT 531
G PTPIQ Q P L GRD++ IA TGSGKTL + +P + L Q P R GP
Sbjct: 200 GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 259
Query: 532 VLVLAPTRELATQIQDEANKFGR------SSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
L++ P+RELA Q + R S L C GG Q+ + G ++VA
Sbjct: 260 GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVA 319
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+L+ K + L LDEADRM+DMGFE IR I + RQTL+++AT P
Sbjct: 320 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 379
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K ++ A LV PV +N+G AA+ + Q VE V + K L + L Q+ V
Sbjct: 380 KKIQNFAKSALVKPVTINVGRAG--AASLDVIQEVEYVKEEAKMVYLLECL--QKTPPPV 435
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF K D + + + A+AIHG K Q ER + FR GK +LVATDVA++G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLEGA 823
LD I+ VINYD P +E+YVHRI +A TF ++ D DL +L A
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEA 555
Query: 824 NQHVPPEVRDMALRCG 839
Q VPP ++ L CG
Sbjct: 556 KQKVPPVLQ--VLHCG 569
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 150/376 (39%), Positives = 198/376 (52%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNNP---RNGPT 531
G PTPIQ Q P L GRD++ IA TGSGKTL + +P + L Q P R GP
Sbjct: 218 GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 277
Query: 532 VLVLAPTRELATQIQDEANKFGR------SSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
L++ P+RELA Q + R S L C GG Q+ + G ++VA
Sbjct: 278 GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVA 337
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+L+ K + L LDEADRM+DMGFE IR I + RQTL+++AT P
Sbjct: 338 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 397
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K ++ A LV PV +N+G AA+ + Q VE V + K L + L Q+ V
Sbjct: 398 KKIQNFAKSALVKPVTINVGRAG--AASLDVIQEVEYVKEEAKMVYLLECL--QKTPPPV 453
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF K D + + + A+AIHG K Q ER + FR GK +LVATDVA++G
Sbjct: 454 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 513
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLEGA 823
LD I+ VINYD P +E+YVHRI +A TF ++ D DL +L A
Sbjct: 514 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEA 573
Query: 824 NQHVPPEVRDMALRCG 839
Q VPP ++ L CG
Sbjct: 574 KQKVPPVLQ--VLHCG 587
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 150/376 (39%), Positives = 198/376 (52%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNNP---RNGPT 531
G PTPIQ Q P L GRD++ IA TGSGKTL + +P + L Q P R GP
Sbjct: 200 GIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 259
Query: 532 VLVLAPTRELATQIQDEANKFGR------SSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
L++ P+RELA Q + R S L C GG Q+ + G ++VA
Sbjct: 260 GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVA 319
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+L+ K + L LDEADRM+DMGFE IR I + RQTL+++AT P
Sbjct: 320 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 379
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K ++ A LV PV +N+G AA+ + Q VE V + K L + L Q+ V
Sbjct: 380 KKIQNFAKSALVKPVTINVGRAG--AASLDVIQEVEYVKEEAKMVYLLECL--QKTPPPV 435
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF K D + + + A+AIHG K Q ER + FR GK +LVATDVA++G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLEGA 823
LD I+ VINYD P +E+YVHRI +A TF ++ D DL +L A
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEA 555
Query: 824 NQHVPPEVRDMALRCG 839
Q VPP ++ L CG
Sbjct: 556 KQKVPPVLQ--VLHCG 569
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 151/403 (37%), Positives = 218/403 (54%)
Query: 446 GVTDLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGS 505
G T P +R+ L +A+ G +PTPIQ Q P L GRD++ IA TGS
Sbjct: 169 GETPSPPIRSFREMKFPKGILNGLAAK---GIKNPTPIQVQGLPTVLAGRDLIGIAFTGS 225
Query: 506 GKTLGYLIPAFIL-LRQLHNNP--RN-GPTVLVLAPTRELATQIQDEANKFGRSSRLSC- 560
GKTL +++P + L Q ++ P RN GP L++ P+RELA Q + + + + +C
Sbjct: 226 GKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQ-ACG 284
Query: 561 -----TCL-YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614
+CL GG P L + +G IVVATPGRL D+L+ K + L +DEADR
Sbjct: 285 MPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADR 344
Query: 615 MLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANK 674
M+DMGFE +R I + RQTL+++AT PK ++ A LV PV +N+G AA+
Sbjct: 345 MIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAG--AASM 402
Query: 675 AITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHG 733
+TQ VE V Q K L L Q+ V+IF K+ D + + + A+AIHG
Sbjct: 403 NVTQQVEYVKQEAKVVYLLDCL--QKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHG 460
Query: 734 DKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXX 793
K Q ER ++ +R GK +LVATDVA++GLD +++ VINYD P+ +E+YVHRI
Sbjct: 461 GKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTG 520
Query: 794 XXXXXXVAHTFFSEQ-DSKYAADLVKVLEGANQHVPPEVRDMA 835
+A T ++ + DL +L Q VP + ++A
Sbjct: 521 RSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELA 563
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 148/376 (39%), Positives = 198/376 (52%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNNP---RNGPT 531
G PTPIQ Q P L GRD++ IA TGSGKTL + +P + L Q P R GP
Sbjct: 196 GIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 255
Query: 532 VLVLAPTRELATQIQDEANKFGRSSR------LSCTCLYGGAPKGPQLRELDQGADIVVA 585
L++ P+RELA Q + R + L C GG Q+ + G ++VA
Sbjct: 256 GLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVA 315
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+L+ K + L LDEADRM+DMGFE IR I + RQTL+++AT P
Sbjct: 316 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 375
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K ++ A LV P+ +N+G AA+ + Q VE V + K L + L Q+ V
Sbjct: 376 KKIQNFAKSALVKPITINVGRAG--AASLDVVQEVEYVKEEAKMVYLLECL--QKTPPPV 431
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF K D + + + A+AIHG K Q ER + FR GK +LVATDVA++G
Sbjct: 432 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASKG 491
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLEGA 823
LD I+ VINYD P +E+YVHRI +A TF ++ D DL +L A
Sbjct: 492 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEA 551
Query: 824 NQHVPPEVRDMALRCG 839
Q VPP ++ L CG
Sbjct: 552 KQKVPPVLQ--VLHCG 565
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 150/376 (39%), Positives = 198/376 (52%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNNP---RNGPT 531
G PTPIQ Q P L GRD++ IA TGSGKTL + +P + L Q P R GP
Sbjct: 200 GILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 259
Query: 532 VLVLAPTRELATQIQDEANKFGR------SSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
L++ P+RELA Q + R S L C GG Q+ + G ++VA
Sbjct: 260 GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVA 319
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+L+ K + L LDEADRM+DMGFE IR I + RQTL+++AT P
Sbjct: 320 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 379
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K ++ A LV PV +N+G AA+ + Q VE V + K L + L Q+ V
Sbjct: 380 KKIQNFAKSALVKPVTINVGRAG--AASLDVIQEVEYVKEEAKMVYLLECL--QKTPPPV 435
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF K D + + + A+AIHG K Q ER + FR GK +LVATDVA++G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLEGA 823
LD I+ VINYD P +E+YVHRI +A TF ++ D DL +L A
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEA 555
Query: 824 NQHVPPEVRDMALRCG 839
Q VPP ++ L CG
Sbjct: 556 KQKVPPVLQ--VLHCG 569
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 150/376 (39%), Positives = 198/376 (52%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNNP---RNGPT 531
G PTPIQ Q P L GRD++ IA TGSGKTL + +P + L Q P R GP
Sbjct: 200 GILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPY 259
Query: 532 VLVLAPTRELATQIQDEANKFGR------SSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
L++ P+RELA Q + R S L C GG Q+ + G ++VA
Sbjct: 260 GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVA 319
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+L+ K + L LDEADRM+DMGFE IR I + RQTL+++AT P
Sbjct: 320 TPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMP 379
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K ++ A LV PV +N+G AA+ + Q VE V + K L + L Q+ V
Sbjct: 380 KKIQNFAKSALVKPVTINVGRAG--AASLDVIQEVEYVKEEAKMVYLLECL--QKTPPPV 435
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF K D + + + A+AIHG K Q ER + FR GK +LVATDVA++G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLEGA 823
LD I+ VINYD P +E+YVHRI +A TF ++ D DL +L A
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEA 555
Query: 824 NQHVPPEVRDMALRCG 839
Q VPP ++ L CG
Sbjct: 556 KQKVPPVLQ--VLHCG 569
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 130/330 (39%), Positives = 196/330 (59%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN-P- 526
V ++ +AG++ PTP+Q + P LQGRD++ A+TG+GKT G+ +P IL R N P
Sbjct: 13 VRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALP--ILERLFPNGVPD 70
Query: 527 ---RNGPT---VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGA 580
R+GP VLVL PTRELA Q+ + + R + C++GG PQ++ + +G
Sbjct: 71 KSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSRGV 130
Query: 581 DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMY 640
D++VA PGRL D+ +D V +LVLDEADRMLDMGF ++K++ +P RQ L++
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLF 190
Query: 641 TATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQE 700
+AT+ D+ +A LL NP ++ + + + I Q V + K L ++
Sbjct: 191 SATFSNDITSLAGKLLHNPERIEVTPPNTTV--ERIEQRVFRLAANHKRSLLAHLITVGA 248
Query: 701 RGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759
+V++F TK ++LA + ++ A+AIHG+KSQ R L F++G I+VATD
Sbjct: 249 -WEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307
Query: 760 VAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
+AARGLDI + V+N++ PN EDYVHRI
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRI 337
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 150/407 (36%), Positives = 218/407 (53%)
Query: 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF 516
R E T + ++ AG+ P+PIQ P+ LQ RD++ IA+TGSGKT +++P
Sbjct: 313 RSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 372
Query: 517 ILLRQL----HNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ 572
+ +L N GP +V+APTRELA QI++E KF T + GG Q
Sbjct: 373 AYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQ 432
Query: 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632
++ QG +IV+ATPGRL D LE + Q + +VLDEADRM+DMGFEPQ+ +++ MP
Sbjct: 433 GLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMP 492
Query: 633 -----PHRQT------LMYTATWPKDVRKIAS-DLLVNPVQVNIGNVDELAANKA---IT 677
P + +Y T+ + L N V A K I+
Sbjct: 493 SSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLIS 552
Query: 678 QHVEVVPQMEKERRLQQILRAQERGSRV-IIFCSTKRLCDQLARSIGR-NFGAIAIHGDK 735
QHV ++ + EK RLQ++L E G + I+F +TK+ CD +A+++ + + +HG K
Sbjct: 553 QHVIMMKESEKFFRLQKLL--DELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGK 610
Query: 736 SQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXX 795
SQ +R+ L FR+ + +LVATDV RG+DI D+ VINYD P +E Y HRI
Sbjct: 611 SQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRA 670
Query: 796 XXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEV-RDMALRCGPG 841
VA +F + D++ DL ++L +N VPPE+ R A R PG
Sbjct: 671 GKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARHEASRFKPG 717
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 132/325 (40%), Positives = 194/325 (59%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN----P 526
S+ G + PIQ ALQGRDI+A AKTG+GKTL + IP L + +
Sbjct: 116 SLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFR 175
Query: 527 RNG--PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVV 584
R+G P LVLAPTRELA Q++ E + + LS C+YGG Q L +G D+VV
Sbjct: 176 RSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVV 233
Query: 585 ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
TPGR+ D++E + + G+V LVLDEAD+ML +GFE + I+ +P RQ+++++AT
Sbjct: 234 GTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATM 293
Query: 645 PKDVRKIASDLLVNPVQVN-IGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS 703
P V+K+A L NP+ ++ +G+ DE A + I + K L ++ +G
Sbjct: 294 PTWVKKLARKYLDNPLNIDLVGDQDEKLA-EGIKLYAIATTSTSKRTILSDLITVYAKGG 352
Query: 704 RVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAAR 763
+ I+F TKR D+++ ++ + A+HGD SQ +R+ LN FR GK +LVATDVA+R
Sbjct: 353 KTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASR 412
Query: 764 GLDIKDIRVVINYDFPNGVEDYVHR 788
GLDI ++ +VI+Y+ PN E +VHR
Sbjct: 413 GLDIPNVDLVIHYELPNDPETFVHR 437
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 124/365 (33%), Positives = 210/365 (57%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ +AG+ +PTP+Q Q P+ L GRD++A A TGSGKT+ +L+P + Q + + P
Sbjct: 184 NLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQSESASPSCP 243
Query: 531 TVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
L+L PTRELA QI+++A + R + L GG P PQL L IV+ TPGR
Sbjct: 244 ACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNIKIVIGTPGR 303
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649
L +IL+ K + V +V+DEAD ML MGF+ Q+ I+ ++P QTL+ +AT P +
Sbjct: 304 LLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTSATIPTGTQ 363
Query: 650 KIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR-VIIF 708
++A L +PV + IG ++ AN + Q V V + K+++L +IL ++ V++F
Sbjct: 364 QLAERLTHDPVTITIGQKNQPCAN--VRQIVLWVEEPSKKKKLFEILNDEKLYQPPVVVF 421
Query: 709 CSTKRLCDQLARSIGR--NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
K D L ++ + + +AIH DK Q ER+ ++ G+ ++++T + RGLD
Sbjct: 422 VDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVISTGILGRGLD 481
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQH 826
+ ++++VIN+D P+ +++YVH+I A TF + + + ++VK ++
Sbjct: 482 LVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMNNNNKRLFLEMVKRVKPTGSI 541
Query: 827 VPPEV 831
+PP++
Sbjct: 542 LPPQI 546
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 134/367 (36%), Positives = 206/367 (56%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP 526
P + +++ GF PTPIQ + P+ L+G ++V A TG+GKT YL+P +L+++
Sbjct: 12 PLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLP---VLQRIQRGK 68
Query: 527 RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
+ VL++ PTRELA Q+ DE K G+ ++ +YGG Q+R L QG +++V T
Sbjct: 69 K--AQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGT 126
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
PGR+ D + K ++ +++LDEAD MLDMGF I I+N + +QTL+++AT P
Sbjct: 127 PGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPA 186
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVI 706
++ I L V + ++ AI Q +P+ EK L IL + E + I
Sbjct: 187 PIKTIIKKFLGGYKTVKLVGREKTVP--AIRQVYYELPETEKIEGLVSILNS-ELPIQAI 243
Query: 707 IFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
+FC TK+ D++ + R + A +HGD SQ ER + F++GK+ +LVATDVAARGL
Sbjct: 244 VFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGL 303
Query: 766 DIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGA-N 824
DI D+ VIN+D P E Y+HRI A T + ++ K L+K +E A N
Sbjct: 304 DIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERK----LLKAIEEAIN 359
Query: 825 QHVPPEV 831
+ + E+
Sbjct: 360 KRLKREI 366
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 134/367 (36%), Positives = 206/367 (56%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP 526
P + +++ GF PTPIQ + P+ L+G ++V A TG+GKT YL+P +L+++
Sbjct: 12 PLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLP---VLQRIQRGK 68
Query: 527 RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
+ VL++ PTRELA Q+ DE K G+ ++ +YGG Q+R L QG +++V T
Sbjct: 69 K--AQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGT 126
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
PGR+ D + K ++ +++LDEAD MLDMGF I I+N + +QTL+++AT P
Sbjct: 127 PGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPA 186
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVI 706
++ I L V + ++ AI Q +P+ EK L IL + E + I
Sbjct: 187 PIKTIIKKFLGGYKTVKLVGREKTVP--AIRQVYYELPETEKIEGLVSILNS-ELPIQAI 243
Query: 707 IFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
+FC TK+ D++ + R + A +HGD SQ ER + F++GK+ +LVATDVAARGL
Sbjct: 244 VFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGL 303
Query: 766 DIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGA-N 824
DI D+ VIN+D P E Y+HRI A T + ++ K L+K +E A N
Sbjct: 304 DIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERK----LLKAIEEAIN 359
Query: 825 QHVPPEV 831
+ + E+
Sbjct: 360 KRLKREI 366
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 125/324 (38%), Positives = 192/324 (59%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF---ILLRQLHNN 525
V ++ G PIQ A++GRD++ A+TG+GKTL + IP I H
Sbjct: 128 VKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGR 187
Query: 526 PRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
+N P LVLAPTRELA Q++ E + S L CLYGG P G Q+REL+ G D+ V
Sbjct: 188 GKN-PQCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMRELNYGIDVAVG 244
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGR+ D+++ ++ +V +VLDEAD+ML +GF + I+ ++P RQ++M++AT P
Sbjct: 245 TPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMP 304
Query: 646 KDVRKIASDLLVNPVQVN-IGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR 704
+R + L NP+ ++ +G+ D+ A+ IT + + + +++ +G +
Sbjct: 305 SWIRSLTKKYLNNPLTIDLVGDSDQKLAD-GITMYSIAADSYGRASIIGPLVKEHGKGGK 363
Query: 705 VIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
I+F TKR D+LA + +++ A+HGD SQ +R+ L FR G ILVATDVAARG
Sbjct: 364 CIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARG 423
Query: 765 LDIKDIRVVINYDFPNGVEDYVHR 788
LD+ ++ +VI+Y+ PN E +VHR
Sbjct: 424 LDVPNVDLVIHYELPNNTETFVHR 447
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 589 (212.4 bits), Expect = 3.1e-57, P = 3.1e-57
Identities = 128/318 (40%), Positives = 194/318 (61%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTV-- 532
+ + PT IQ Q+ P+ L D++A A+TG+GKT + +P +L+QL + P +
Sbjct: 23 SAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALP---ILQQLISVQPCKPELRA 79
Query: 533 LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLND 592
LVL PTRELA Q+ +G+ + ++ YGG Q+ EL G DI++ATPGRL D
Sbjct: 80 LVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLD 139
Query: 593 ILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652
+L + + + LV DEADRMLDMGF+ +I +I +P +QTL+++AT+ D+ K++
Sbjct: 140 LLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMS 199
Query: 653 SDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTK 712
++LV P V I ++ A + + Q V V +++R L L +V++F TK
Sbjct: 200 KNILVEPKMVEIDEKNKAADD--VEQLVYGV-DADRKRELTSFLIGSRNWKQVLVFTRTK 256
Query: 713 RLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771
+ D LA+ + ++ ++AIHGDKSQG R+ L++F+ GK L+ATDVAARG+DIK +
Sbjct: 257 QCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLS 316
Query: 772 VVINYDFPNGVEDYVHRI 789
VINY+ P EDYVHRI
Sbjct: 317 HVINYELPYNAEDYVHRI 334
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 589 (212.4 bits), Expect = 3.1e-57, P = 3.1e-57
Identities = 134/353 (37%), Positives = 203/353 (57%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP 526
P + ++ G+ T +Q Q P+AL G+DI+A A+TG+GKT + +P +L QL P
Sbjct: 11 PLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALP---VLEQLAAKP 67
Query: 527 RNGPTV--LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVV 584
+ P + LV+ PTRELA Q+ K+ + L +YGGA PQ + ++QG DI+V
Sbjct: 68 ADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILV 127
Query: 585 ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
ATPGRL DI+ +D V+ LV+DEADRMLD+GF I K+ + P QT++++AT+
Sbjct: 128 ATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATY 187
Query: 645 PKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR 704
V++++ +L P VN+ E + Q V V + K L +++ + +
Sbjct: 188 SDAVKQLSHKMLNQPQWVNVA---ENTTASTVEQLVYRVDKRRKAELLSELV-GRNNWRQ 243
Query: 705 VIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAAR 763
V++F STK + L + + + A HGDK+QG R+ VL+ F++GK +LVATDVAAR
Sbjct: 244 VLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAAR 303
Query: 764 GLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADL 816
GLDI+ + +VIN + P EDYVHRI A +F S D + A++
Sbjct: 304 GLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 589 (212.4 bits), Expect = 3.1e-57, P = 3.1e-57
Identities = 128/318 (40%), Positives = 194/318 (61%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTV-- 532
+ + PT IQ Q+ P+ L D++A A+TG+GKT + +P +L+QL + P +
Sbjct: 23 SAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALP---ILQQLISVQPCKPELRA 79
Query: 533 LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLND 592
LVL PTRELA Q+ +G+ + ++ YGG Q+ EL G DI++ATPGRL D
Sbjct: 80 LVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLD 139
Query: 593 ILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652
+L + + + LV DEADRMLDMGF+ +I +I +P +QTL+++AT+ D+ K++
Sbjct: 140 LLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMS 199
Query: 653 SDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTK 712
++LV P V I ++ A + + Q V V +++R L L +V++F TK
Sbjct: 200 KNILVEPKMVEIDEKNKAADD--VEQLVYGV-DADRKRELTSFLIGSRNWKQVLVFTRTK 256
Query: 713 RLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771
+ D LA+ + ++ ++AIHGDKSQG R+ L++F+ GK L+ATDVAARG+DIK +
Sbjct: 257 QCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLS 316
Query: 772 VVINYDFPNGVEDYVHRI 789
VINY+ P EDYVHRI
Sbjct: 317 HVINYELPYNAEDYVHRI 334
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 589 (212.4 bits), Expect = 3.1e-57, P = 3.1e-57
Identities = 134/353 (37%), Positives = 203/353 (57%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP 526
P + ++ G+ T +Q Q P+AL G+DI+A A+TG+GKT + +P +L QL P
Sbjct: 11 PLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALP---VLEQLAAKP 67
Query: 527 RNGPTV--LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVV 584
+ P + LV+ PTRELA Q+ K+ + L +YGGA PQ + ++QG DI+V
Sbjct: 68 ADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILV 127
Query: 585 ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
ATPGRL DI+ +D V+ LV+DEADRMLD+GF I K+ + P QT++++AT+
Sbjct: 128 ATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATY 187
Query: 645 PKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR 704
V++++ +L P VN+ E + Q V V + K L +++ + +
Sbjct: 188 SDAVKQLSHKMLNQPQWVNVA---ENTTASTVEQLVYRVDKRRKAELLSELV-GRNNWRQ 243
Query: 705 VIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAAR 763
V++F STK + L + + + A HGDK+QG R+ VL+ F++GK +LVATDVAAR
Sbjct: 244 VLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAAR 303
Query: 764 GLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADL 816
GLDI+ + +VIN + P EDYVHRI A +F S D + A++
Sbjct: 304 GLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 588 (212.0 bits), Expect = 4.0e-57, P = 4.0e-57
Identities = 128/345 (37%), Positives = 199/345 (57%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
V ++ G+ SPTPIQ Q P L G++++A A+TG+GKT +++P LL + + P+
Sbjct: 13 VKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLP---LLHRFADAPKI 69
Query: 529 GPT---VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
P ++L PTRELA Q++ N++ + L+ +YGG PQ + L +G D++VA
Sbjct: 70 RPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVA 129
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+ + I F +VS+LVLDEADRMLDMGF I I+ ++P RQ L+++AT
Sbjct: 130 TPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATLS 189
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K V+ +A + + +++ I + AA+ I Q + V + K L +++ + ++
Sbjct: 190 KQVKALAKTAIPDAIEIEISRKN--AASTQIDQWLTTVDKDRKSALLSHLIK-ENNWAQA 246
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF TK +L + R A A H +SQ R+ +L F++GK P LVAT V +RG
Sbjct: 247 LIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRG 306
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQD 809
+DI + VINYD P+ +DY+HRI A +F S+ D
Sbjct: 307 IDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDD 351
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 588 (212.0 bits), Expect = 4.0e-57, P = 4.0e-57
Identities = 128/345 (37%), Positives = 199/345 (57%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
V ++ G+ SPTPIQ Q P L G++++A A+TG+GKT +++P LL + + P+
Sbjct: 13 VKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLP---LLHRFADAPKI 69
Query: 529 GPT---VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
P ++L PTRELA Q++ N++ + L+ +YGG PQ + L +G D++VA
Sbjct: 70 RPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVA 129
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D+ + I F +VS+LVLDEADRMLDMGF I I+ ++P RQ L+++AT
Sbjct: 130 TPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATLS 189
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
K V+ +A + + +++ I + AA+ I Q + V + K L +++ + ++
Sbjct: 190 KQVKALAKTAIPDAIEIEISRKN--AASTQIDQWLTTVDKDRKSALLSHLIK-ENNWAQA 246
Query: 706 IIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF TK +L + R A A H +SQ R+ +L F++GK P LVAT V +RG
Sbjct: 247 LIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRG 306
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQD 809
+DI + VINYD P+ +DY+HRI A +F S+ D
Sbjct: 307 IDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDD 351
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 588 (212.0 bits), Expect = 4.0e-57, P = 4.0e-57
Identities = 133/355 (37%), Positives = 203/355 (57%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
+A++ + GF++ TPIQAQ+ P L+G+D++ KTGSGKT + + +L L N R
Sbjct: 16 LANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLG---VLSNL-NVKRF 71
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
LVL PTRELA Q+ + GR+ + L GG P GPQ+ L+ GA I+V TP
Sbjct: 72 RVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTP 131
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GR+ D L +ID +++ LVLDEADRML+MGF+ + I+ P RQTL+++AT+P
Sbjct: 132 GRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPAS 191
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVII 707
+ +IA + N + + + + ++ + VE ++ L+ +L + S V+
Sbjct: 192 IEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVE--GSAARDEALETLLLHHQPTSSVV- 248
Query: 708 FCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
FC+TKR +A ++ ++ F I +HGD Q ERD L QF + ILVATDVAARGLD
Sbjct: 249 FCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLD 308
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
+ ++ V NYD E +VHRI +A +FFS+ +S A + + ++
Sbjct: 309 VDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 584 (210.6 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 139/364 (38%), Positives = 205/364 (56%)
Query: 467 PRVA-SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN 525
P+V ++ AG+ +PTPIQA P AL+GRD++ IA+TG+GKT + +P LL +
Sbjct: 11 PKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLARGRAR 70
Query: 526 PRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
R P LVL PTRELA Q+ + + + + +L+ L GG Q +D+G D+++A
Sbjct: 71 ARM-PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIA 129
Query: 586 TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
TPGRL D E K+ V ++V+DEADRMLDMGF P I +I + P RQTL ++AT
Sbjct: 130 TPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSATMA 189
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQ---ILRAQ--- 699
++ +I + L P ++ + + A++ I Q V + ++R + +LRA
Sbjct: 190 PEIERITNTFLSAPARIEVAR--QATASETIEQGVVLFKGSRRDREASEKRAVLRALIDA 247
Query: 700 --ERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILV 756
E+ + IIFC+ K D +A+S+ + + A IHGD Q +R L+ FR GK +LV
Sbjct: 248 EGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRLLV 307
Query: 757 ATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADL 816
A+DVAARGLD+ + V N+D P EDYVHRI A T +D K A D
Sbjct: 308 ASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEK-ALDA 366
Query: 817 VKVL 820
++ L
Sbjct: 367 IEKL 370
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 583 (210.3 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 131/332 (39%), Positives = 198/332 (59%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP 526
P + ++ G++ PT IQ + P+ L G+DI+A A+TG+GKT +++P LL QL++
Sbjct: 11 PILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLP---LLEQLNSQY 67
Query: 527 RN-GPTV-------LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQ 578
+ G + L+L PTRELA Q++ +++ + +S +YGG Q + L
Sbjct: 68 KETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQKQRLIW 127
Query: 579 GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTL 638
G DI+VATPGRL D+ + + F ++ +LVLDEADRMLDMGF I KI+ +P HRQ L
Sbjct: 128 GVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQNL 187
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
+++AT ++VR +A + PV+++IG D+ A+ I Q + V + K L I+
Sbjct: 188 LFSATMSEEVRGLAKRTIHKPVEISIG-ADK-ASKPKIEQWLVTVDKANKSALLSHIITT 245
Query: 699 QERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
Q + +IF TK +L + R A +IH ++Q R+ +LN F+SGK LVA
Sbjct: 246 QN-WQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKIKFLVA 304
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
T +AARGLDI ++ VINYD P V+DY+HRI
Sbjct: 305 TAIAARGLDIGELSRVINYDLPAQVDDYIHRI 336
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 338 (124.0 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 75/202 (37%), Positives = 116/202 (57%)
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEK-ERRL 692
+RQT+MYTAT P V +IA L P V IG+ E A + Q VE++ +K ++RL
Sbjct: 554 YRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGE--AVDTVEQRVEMIAGEDKRKKRL 611
Query: 693 QQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGK 751
+IL + + +I+F + KR CD +AR I + F ++ +HG K+Q +R+ L R+G
Sbjct: 612 GEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGS 671
Query: 752 SPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSK 811
+ +LVATD+A RG+D+ D+ +VIN++ +E Y HRI VA TF +D+
Sbjct: 672 TDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDAD 731
Query: 812 YAADLVKVL-EGANQHVPPEVR 832
DL ++L + VP E+R
Sbjct: 732 VMYDLKQMLIKSPISRVPEELR 753
Score = 333 (122.3 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 68/163 (41%), Positives = 97/163 (59%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN------NPRNG 529
G+ PTPIQ PIA+Q RD++ +A TGSGKT +L+P + +L +G
Sbjct: 365 GYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDG 424
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P +VLAPTRELA QI+ EA KF + + GG Q L GA+I++ATPGR
Sbjct: 425 PYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGR 484
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632
L D +E + + Q +++DEADRM+D+GFE + KI++ +P
Sbjct: 485 LVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 527
Score = 40 (19.1 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 267 SPSNFQQTGASSSQNLPGGTNSMKTG 292
+PS +T S+++P G +M+ G
Sbjct: 131 TPSRGFRTPNGDSRSIPTGPRAMRNG 156
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 581 (209.6 bits), Expect = 2.8e-56, P = 2.8e-56
Identities = 142/360 (39%), Positives = 198/360 (55%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVL 533
AGFS TPIQ +T P++L G+D+ A+TG+GKT +LI F LLR R P +
Sbjct: 19 AGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTKLLRSGRGGERRHPRAI 78
Query: 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDI 593
+LAPTREL QI+ +A G + +YGG Q L +GAD+VV TPGRL D
Sbjct: 79 ILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGADVVVGTPGRLIDY 138
Query: 594 LEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH--RQTLMYTATWPKDVRKI 651
L+ K ++ +LV+DEADRM DMGF +R I+ +PP+ RQ LM++AT + V ++
Sbjct: 139 LKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYDKRQNLMFSATLNQRVMEL 198
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCST 711
A + + P +V + +++ A + + Q + V + EK L +LR +E R +IF +T
Sbjct: 199 AYEFMNVPEKVAV-TPEQMTAER-VEQVLYHVGRKEKFPLLLGLLR-KEGMERTMIFVNT 255
Query: 712 KRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
KR + L + N F I GD Q +R +L F+SGK PI++ATDVA+RGL I +
Sbjct: 256 KREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMIATDVASRGLHIDGV 315
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
VINYD P EDYVHRI A S D A L + E +P E
Sbjct: 316 SHVINYDLPQDAEDYVHRIGRTARAGAEGKA---ISMADEDGAFHLEAIHEYIKDKIPVE 372
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 580 (209.2 bits), Expect = 3.7e-56, P = 3.7e-56
Identities = 138/370 (37%), Positives = 209/370 (56%)
Query: 467 PRVA-SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN 525
PRV ++ G+ SPT IQA T P + G D+V +A+TG+GKT + IP +L ++
Sbjct: 22 PRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIP---MLSKIDIT 78
Query: 526 PRNGPTVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVV 584
+ P LVL PTRELA Q+ + ++G S+L+ +YGG+ QL L +GA +VV
Sbjct: 79 SKV-PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVV 137
Query: 585 ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
TPGR+ D LE +D +V LVLDEAD ML MGF + +I++E P ++Q +++AT
Sbjct: 138 GTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATM 197
Query: 645 PKDVRKIASDLLVNPVQVNIGNVDELAANKAITQ-HVEVVPQMEKERRLQQILRAQERGS 703
P +RK+++ L +P +V +A N I+Q +++V +M+ R+ ++ E
Sbjct: 198 PPAIRKLSAKYLHDPFEVTCKAKTAVAEN--ISQSYIQVARKMDALTRVLEV----EPFE 251
Query: 704 RVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
+I+F TK+ +++A + R F A AI GD Q +R+ + R G ILVATDVAA
Sbjct: 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311
Query: 763 RGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEG 822
RGLD++ I V+NYD P+ E YVHRI A F S ++ L+K +E
Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE----LHLLKAIEK 367
Query: 823 ANQHVPPEVR 832
A + E +
Sbjct: 368 ATRQTLTEAQ 377
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 580 (209.2 bits), Expect = 3.7e-56, P = 3.7e-56
Identities = 143/374 (38%), Positives = 210/374 (56%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL-LRQLHNNP---RNGPT 531
G +PT IQ Q P+AL GRD++ IA TGSGKT+ +++P + L Q P GP
Sbjct: 209 GIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPF 268
Query: 532 VLVLAPTRELATQIQD------EA-NKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVV 584
L++ P+RELA QI D +A K G + C+ GG P G Q +++ G IVV
Sbjct: 269 GLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCI-GGVPIGEQAKDVRDGIHIVV 327
Query: 585 ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
ATPGRL+D+L K I+ LVLDEADRMLDMGFE +I+ I RQTL+++AT
Sbjct: 328 ATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATM 387
Query: 645 PKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS- 703
P+ ++ A LV P+ VN+G AA+ + Q +E V E +L ++L ++ S
Sbjct: 388 PRKIQFFAKSALVKPIVVNVGRAG--AASLNVLQELEFV---RSENKLVRVLECLQKTSP 442
Query: 704 RVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
+V+IF K D + + + +IHG K Q +R + FR + +LVATDVA+
Sbjct: 443 KVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVAS 502
Query: 763 RGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLE 821
+GLD + I VIN+D P +E+YVHRI +A TF +++ + +DL ++L
Sbjct: 503 KGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLLA 562
Query: 822 GANQHVPPEVRDMA 835
A Q +P ++ +A
Sbjct: 563 EAGQELPEFLKMLA 576
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 557 (201.1 bits), Expect = 4.9e-56, Sum P(2) = 4.9e-56
Identities = 145/399 (36%), Positives = 219/399 (54%)
Query: 444 SPGVTDLSP-AEV-YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIA 501
S +T + P AE+ ++ E++ + S+ S F+ PTPIQ++ P AL+G+DI+ +A
Sbjct: 108 SSSITTIDPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLA 167
Query: 502 KTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCT 561
+TGSGKT + IP +L+ L + + LVLAPTREL QI+D + G S L +
Sbjct: 168 QTGSGKTAAFAIP---ILQSLWH-AQQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSS 223
Query: 562 CLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKK-IDFGQVSLLVLDEADRMLDMGF 620
C+ GG Q R+L + ++VATPGR+ D LE K + LV+DEADR+LDM F
Sbjct: 224 CIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDF 283
Query: 621 EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHV 680
P + KI+ +P R T +++AT + K+ L NPV+V + + + A N + Q +
Sbjct: 284 GPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADN--LVQSM 341
Query: 681 EVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQ---LARSIGRNFGAIAIHGDKSQ 737
+V K L +L + G +I+F T + LAR +G F A+ +HG SQ
Sbjct: 342 MLVNDGYKNTILIHLLN-EFMGKSIIVFTRTVAHAQRTALLARILG--FNAVPLHGQLSQ 398
Query: 738 GERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXX 797
+R LN+F+S ++ ILVATDVAARGLDI + VVINYD P + Y+HR+
Sbjct: 399 SQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGR 458
Query: 798 XXVAHTFFSEQDSKYAADLVKVL--EGANQHVPP-EVRD 833
+ + ++ D + + VL + + PP EV D
Sbjct: 459 SGKSISLITQYDLEMYLRIESVLGKKLPKEDKPPKEVLD 497
Score = 45 (20.9 bits), Expect = 4.9e-56, Sum P(2) = 4.9e-56
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 252 KREEAEFPPGNQTGFSPSNFQQTGASSSQNL-PGGTNSMKTGAHLGHVQQFGGS--SVTL 308
K++E E NQT S S+ T +SS + P KT L V S S+
Sbjct: 84 KQQEQENANHNQTESSLSSSSSTTSSSITTIDPDAELKFKTFKELNLVPDLLESIESMKF 143
Query: 309 QQPNPM 314
+P P+
Sbjct: 144 TKPTPI 149
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 579 (208.9 bits), Expect = 4.9e-56, P = 4.9e-56
Identities = 136/322 (42%), Positives = 195/322 (60%)
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPK-GPQLRELDQGADIVVATPG 588
P+ LVL+PTREL+ QI +E+ KF + ++ LYGG Q+ +L G I++ATPG
Sbjct: 316 PSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPG 375
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIV--NEMPP--HRQTLMYTATW 644
RL D+++ I LVLDEADRMLDMGFEPQIR+IV N MP R T M++AT+
Sbjct: 376 RLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATF 435
Query: 645 PKDVRKIASDLLV-NPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS 703
PK+++ +A D L N V + +G V + N I Q + V + EK L +L A S
Sbjct: 436 PKEIQLLAQDFLKENYVFLAVGRVGSTSEN--IMQKIVWVEEDEKRSYLMDLLDATGDSS 493
Query: 704 RVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
++F TKR LA + R N+ + IHGD Q ER+ L+ FR+G +PILVAT VAA
Sbjct: 494 LTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAA 553
Query: 763 RGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEG 822
RGLDI +++ VINYD P+ V++YVHRI +A +FF++++ A +L+ ++
Sbjct: 554 RGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVE 613
Query: 823 ANQHVPPEVRDMA--LRCGPGF 842
ANQ +P + M+ +R G G+
Sbjct: 614 ANQELPDWLEGMSGDMRSGGGY 635
Score = 351 (128.6 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 100/273 (36%), Positives = 148/273 (54%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQ-----LHN 524
++ +AG+ PTP+Q + P ALQG RD+++ A+TGSGKT +L+P + Q +H
Sbjct: 245 NIKTAGYDRPTPVQKYSIP-ALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHR 303
Query: 525 NPRNG-------PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPK-GPQLREL 576
+ + P+ LVL+PTREL+ QI +E+ KF + ++ LYGG Q+ +L
Sbjct: 304 SVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKL 363
Query: 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIV--NEMPPH 634
G I++ATPGRL D+++ I LVLDEADRMLDMGFEPQIR+IV N MP
Sbjct: 364 RLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSK 423
Query: 635 RQTLMYTATWPKDVRKIASDLLVNPVQVNIG--NVDELAA-NKAITQHVEVVPQMEKERR 691
+ + TA + K L + ++ N V + + ++ I Q + V + EK
Sbjct: 424 EERI--TAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSY 481
Query: 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR 724
L +L A S ++F TKR LA + R
Sbjct: 482 LMDLLDATGDSSLTLVFVETKRGASDLAYYLNR 514
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 579 (208.9 bits), Expect = 4.9e-56, P = 4.9e-56
Identities = 132/373 (35%), Positives = 213/373 (57%)
Query: 465 TLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQL 522
+LP V + + +G+ PTPIQ Q P+ L GRDI+A A TGSGKT +L+P +++R L
Sbjct: 209 SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLP--VIMRAL 266
Query: 523 HNNPRNGPTVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGAD 581
+ P+ L+L PTRELA QI+ +A + R+ L GG P PQL L Q
Sbjct: 267 FESKT--PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVK 324
Query: 582 IVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641
+++ATPGRL DI++ ++ V ++V+DEAD ML MGF+ Q+ I+ +P QT++ +
Sbjct: 325 VIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVS 384
Query: 642 ATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQER 701
AT P + ++AS LL NPV++ G + AN + Q + V K+++L +IL ++
Sbjct: 385 ATIPTSIEQLASQLLHNPVRIITGEKNLPCAN--VRQIILWVEDPAKKKKLFEILNDKKL 442
Query: 702 GSR-VIIFCSTKRLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKSPILVAT 758
V++F K D L+ ++ + G +I+IH +KSQ ER +L G ++V+T
Sbjct: 443 FKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVST 502
Query: 759 DVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVK 818
V RGLD+ +R+V+N+D P+ +++YVH+I A TF + + D+ K
Sbjct: 503 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAK 562
Query: 819 VLEGANQHVPPEV 831
++ +PP++
Sbjct: 563 RVKPTGSILPPQL 575
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 578 (208.5 bits), Expect = 6.4e-56, P = 6.4e-56
Identities = 128/323 (39%), Positives = 193/323 (59%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
S+ G ++PT IQ Q PIAL G+D++A +KTGSGKTL +L+PA + + P
Sbjct: 15 SLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRDP 74
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
VL+L PTRELA Q+ + +++ + GG Q + L + +VATPGR+
Sbjct: 75 RVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRI 134
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH--RQTLMYTATWP-KD 647
D LE K + + LL+LDEADRMLD+GF PQ+ K +NE H RQTLM++AT +
Sbjct: 135 ADHLEQKNLFLNGLELLILDEADRMLDLGFAPQL-KAINEAADHKRRQTLMFSATLDHSE 193
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVII 707
+ +IA+ LL NP+ V IG A ++ I+Q + + ++ + L L + E +VII
Sbjct: 194 INEIAAALLKNPLHVAIGTAH--AEHQDISQRIYLCDHLDHKEALLSRLLSDESHKQVII 251
Query: 708 FCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
F +T+ ++LA + + F A+ G+ Q R+ +++QF G+ ILV TDVA+RGLD
Sbjct: 252 FTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLD 311
Query: 767 IKDIRVVINYDFPNGVEDYVHRI 789
+ ++ +VIN+D P E+YVHRI
Sbjct: 312 LLNVSLVINFDMPKFAEEYVHRI 334
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 578 (208.5 bits), Expect = 6.4e-56, P = 6.4e-56
Identities = 130/357 (36%), Positives = 195/357 (54%)
Query: 461 EVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR 520
E+ P +A + + PTPIQA+ P GRD++A A TGSGKT + +P LR
Sbjct: 12 ELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLR 71
Query: 521 Q-----LHNNPRNGPTVLVLAPTRELATQIQDEANKFGR--SSRLSCTCLYGGAPKGPQL 573
+ N+ N T LVL PTRELA Q+ D + + + ++GG Q+
Sbjct: 72 EDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQM 131
Query: 574 RELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPP 633
L G DI+VATPGRL D++ I +V LVLDEADRML +GF ++ ++ P
Sbjct: 132 LALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPK 191
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
+QTL+++AT+P+ V + +LL NP+++ + + D + Q V V + EK L
Sbjct: 192 KKQTLLFSATFPEQVTTLTQELLNNPIEIQLQSADA----STLVQRVFTVNKGEKTAVLA 247
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKS 752
+++ QE+ + +IF + K C+ LA + R A HGDK Q ER VL+ F++G
Sbjct: 248 HLIQ-QEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDI 306
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQD 809
+L+ATD+AARGLDI+ + VVIN++ P DY+HRI +A + +D
Sbjct: 307 EVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHED 363
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 578 (208.5 bits), Expect = 6.4e-56, P = 6.4e-56
Identities = 128/323 (39%), Positives = 193/323 (59%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
S+ G ++PT IQ Q PIAL G+D++A +KTGSGKTL +L+PA + + P
Sbjct: 15 SLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRDP 74
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
VL+L PTRELA Q+ + +++ + GG Q + L + +VATPGR+
Sbjct: 75 RVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRI 134
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH--RQTLMYTATWP-KD 647
D LE K + + LL+LDEADRMLD+GF PQ+ K +NE H RQTLM++AT +
Sbjct: 135 ADHLEQKNLFLNGLELLILDEADRMLDLGFAPQL-KAINEAADHKRRQTLMFSATLDHSE 193
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVII 707
+ +IA+ LL NP+ V IG A ++ I+Q + + ++ + L L + E +VII
Sbjct: 194 INEIAAALLKNPLHVAIGTAH--AEHQDISQRIYLCDHLDHKEALLSRLLSDESHKQVII 251
Query: 708 FCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
F +T+ ++LA + + F A+ G+ Q R+ +++QF G+ ILV TDVA+RGLD
Sbjct: 252 FTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLD 311
Query: 767 IKDIRVVINYDFPNGVEDYVHRI 789
+ ++ +VIN+D P E+YVHRI
Sbjct: 312 LLNVSLVINFDMPKFAEEYVHRI 334
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 560 (202.2 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 126/367 (34%), Positives = 211/367 (57%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ ++G+ PTPIQ Q P+ L GRD++A A TGSGKT +L+P ++LR L + P
Sbjct: 218 NLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLP--VILRALSQS--KSP 273
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSC---TCLYGGAPKGPQLRELDQGADIVVATP 587
+ LVL PTRELA QI+ +A + S L C L GG P PQ L Q +++ATP
Sbjct: 274 SGLVLTPTRELAIQIERQAKEL--MSGLPCLRTALLVGGLPAPPQRHRLRQRIQVIIATP 331
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL DI++ + ++ G + ++V+DEAD ML MGF+ Q+ ++ ++P QT++ +AT P
Sbjct: 332 GRLLDIIKQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDCQTVLASATIPAS 391
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR-VI 706
V ++A LL +PV + G + L ++ Q V V + K+++L +IL ++ V+
Sbjct: 392 VEQLACQLLRDPVAITAGERN-LPC-PSVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVL 449
Query: 707 IFCSTKRLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+F K D L+ ++ + G + ++H DK+Q ER +L G ++V+T V RG
Sbjct: 450 VFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDVVVSTGVLGRG 509
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGAN 824
LD+ +++V+N+D P+ +++YVH+I A TF + + D+ K ++
Sbjct: 510 LDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFWDIAKRVKPTG 569
Query: 825 QHVPPEV 831
+PP++
Sbjct: 570 SLLPPQL 576
Score = 38 (18.4 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 13/45 (28%), Positives = 16/45 (35%)
Query: 403 GGAAPGQATGLNAVAGHAMHGMYSHAGSFPNNAMMRPTFMGS-PG 446
GG + A+G A A G H P + T S PG
Sbjct: 37 GGDSLADASGTEGAAAAAHQGAQPHPLPGPTGPVSEGTLPDSEPG 81
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 574 (207.1 bits), Expect = 1.9e-55, P = 1.9e-55
Identities = 133/358 (37%), Positives = 203/358 (56%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP 526
P + +++ G+ P+PIQA+ P L GRD++ +A+TGSGKT + +P LL+ L +P
Sbjct: 16 PILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP---LLQNL--DP 70
Query: 527 R-NGPTVLVLAPTRELATQIQDEANKFGRSSR-LSCTCLYGGAPKGPQLRELDQGADIVV 584
P +LVLAPTRELA Q+ + F + R ++ LYGG QLR L QG IVV
Sbjct: 71 ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130
Query: 585 ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
TPGRL D L+ +D ++S LVLDEAD ML MGF + I+ ++P QT +++AT
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190
Query: 645 PKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR 704
P+ +R+I + P +V I + + I+Q V M K L + L A++ +
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA- 247
Query: 705 VIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAAR 763
IIF TK ++A ++ RN + + A++GD +Q R+ L + + G+ IL+ATDVAAR
Sbjct: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307
Query: 764 GLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
GLD++ I +V+NYD P E YVHRI A F ++ + ++ + ++
Sbjct: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 346 (126.9 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 76/182 (41%), Positives = 112/182 (61%)
Query: 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF 516
R+ E + + + ++ A + PTPIQ Q PIAL+ RD++ IA+TGSGKT +++P
Sbjct: 698 RKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPML 757
Query: 517 ILLRQL----HNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSC--TCLYGGAPKG 570
++QL + ++GP LV+AP+RELA QI +E NKF +S SC + GG
Sbjct: 758 SYVKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKF--ASYCSCRTVAVVGGRNAE 815
Query: 571 PQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE 630
Q EL +G +IV+ TPGRL D LE Q + ++LDEADRM+DMGFE + I+++
Sbjct: 816 AQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDK 875
Query: 631 MP 632
+P
Sbjct: 876 IP 877
Score = 325 (119.5 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 73/210 (34%), Positives = 124/210 (59%)
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
+R T M++AT P V +++ L P ++IG D A ++I Q +E + + +K+++LQ
Sbjct: 903 YRLTQMFSATMPPSVERLSRKYLRAPAYISIG--DPGAGKRSIEQKLEFLTEGKKKQKLQ 960
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752
+IL E +I+F + K++ D +++SI + + A+A+HG K+Q R+ L+ F++ +
Sbjct: 961 EILEMYE--PPIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEF 1018
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
ILVATDVA RG+D+ +++VIN+D P +E Y HRI +A +F +E DS
Sbjct: 1019 DILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHL 1078
Query: 813 AADLVKVLEGANQHVPPEV-RDMALRCGPG 841
DL + L +N VP E+ + A + PG
Sbjct: 1079 FYDLKQFLISSNNIVPLELANNPASKVKPG 1108
Score = 39 (18.8 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 323 DMAHHQHGPRFENQMGPQMM 342
D + + P ++N++ PQ++
Sbjct: 490 DTSRNDSNPLYQNRLEPQLL 509
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 346 (126.9 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 76/182 (41%), Positives = 112/182 (61%)
Query: 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF 516
R+ E + + + ++ A + PTPIQ Q PIAL+ RD++ IA+TGSGKT +++P
Sbjct: 698 RKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPML 757
Query: 517 ILLRQL----HNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSC--TCLYGGAPKG 570
++QL + ++GP LV+AP+RELA QI +E NKF +S SC + GG
Sbjct: 758 SYVKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKF--ASYCSCRTVAVVGGRNAE 815
Query: 571 PQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE 630
Q EL +G +IV+ TPGRL D LE Q + ++LDEADRM+DMGFE + I+++
Sbjct: 816 AQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDK 875
Query: 631 MP 632
+P
Sbjct: 876 IP 877
Score = 325 (119.5 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 73/210 (34%), Positives = 124/210 (59%)
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
+R T M++AT P V +++ L P ++IG D A ++I Q +E + + +K+++LQ
Sbjct: 903 YRLTQMFSATMPPSVERLSRKYLRAPAYISIG--DPGAGKRSIEQKLEFLTEGKKKQKLQ 960
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752
+IL E +I+F + K++ D +++SI + + A+A+HG K+Q R+ L+ F++ +
Sbjct: 961 EILEMYE--PPIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEF 1018
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKY 812
ILVATDVA RG+D+ +++VIN+D P +E Y HRI +A +F +E DS
Sbjct: 1019 DILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHL 1078
Query: 813 AADLVKVLEGANQHVPPEV-RDMALRCGPG 841
DL + L +N VP E+ + A + PG
Sbjct: 1079 FYDLKQFLISSNNIVPLELANNPASKVKPG 1108
Score = 39 (18.8 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 323 DMAHHQHGPRFENQMGPQMM 342
D + + P ++N++ PQ++
Sbjct: 490 DTSRNDSNPLYQNRLEPQLL 509
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 502 (181.8 bits), Expect = 2.3e-55, Sum P(2) = 2.3e-55
Identities = 112/290 (38%), Positives = 166/290 (57%)
Query: 533 LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLND 592
L+L PTRELA Q+ D +F + + +YGG Q + L QG D++VATPGRL +
Sbjct: 95 LILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLE 154
Query: 593 ILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652
L ++ +D QV LVLDEADRMLDMGF I K++ + QTLM++AT+ V+ +A
Sbjct: 155 HLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLA 214
Query: 653 SDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTK 712
+ LL +P +++ + + K I Q V V + E++R L L +V++F TK
Sbjct: 215 NQLLKSPKTISVSK-ENTTSGK-IKQAVYWVTE-ERKRELLSELIGVNNWQQVLVFAGTK 271
Query: 713 RLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771
+ LA+ + + A HGDK+QG R+ L QF GK +LVATDVAARGLDI D+
Sbjct: 272 ESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLA 331
Query: 772 VVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
V+N+ P EDYVHR+ A + S +D ++ ++ +++E
Sbjct: 332 FVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENIEQLIE 381
Score = 99 (39.9 bits), Expect = 2.3e-55, Sum P(2) = 2.3e-55
Identities = 21/70 (30%), Positives = 42/70 (60%)
Query: 462 VSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ 521
+SA L + ++ + G+ + TPIQ + P+ QG D++A A+TG+GKT + +P + +
Sbjct: 8 LSADL--LKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAK 65
Query: 522 LHNNPRNGPT 531
++ ++ T
Sbjct: 66 ANHAAKSSTT 75
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 573 (206.8 bits), Expect = 2.4e-55, P = 2.4e-55
Identities = 127/365 (34%), Positives = 211/365 (57%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ +AG+ PTPIQ Q P+ L GRD++A A TGSGKT +L+P ++ R L + P
Sbjct: 205 NLKTAGYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLP--VITRALVQS--KAP 260
Query: 531 TVLVLAPTRELATQIQDEANKF-GRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
+ LVL PTRELA QI+ +A + G R+ L GG P PQL L Q +++ATPGR
Sbjct: 261 SALVLTPTRELAIQIERQAKELMGGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGR 320
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649
L DI++ +D G + ++V+DEAD ML MGF+ Q+ ++ +P QT++ +AT P +
Sbjct: 321 LLDIMKQSSVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATIPTRIE 380
Query: 650 KIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR-VIIF 708
++AS LL +PV+V G + L ++ Q V V + K+++L +IL ++ V++F
Sbjct: 381 QLASRLLHDPVRVLAGEKN-LPC-PSVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVF 438
Query: 709 CSTKRLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
K D L+ ++ + G + ++H +KSQ ER +L G ++V+T V RGLD
Sbjct: 439 VDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLD 498
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQH 826
+ +++V+N+D P+ +++YVH++ A TF + + D+ K ++
Sbjct: 499 LISVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSL 558
Query: 827 VPPEV 831
+PP++
Sbjct: 559 LPPQL 563
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 572 (206.4 bits), Expect = 3.2e-55, P = 3.2e-55
Identities = 130/342 (38%), Positives = 194/342 (56%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
+++ GF TPIQAQT P+ L +D++ A+TG+GKT + IP L+ ++ NP + P
Sbjct: 17 AINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIP---LVEKI--NPES-P 70
Query: 531 TV--LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
+ +V+APTRELA Q+ +E K G+ R +YGG G Q+R L + +I+V TPG
Sbjct: 71 NIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPG 130
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
RL D + + I V+ +V+DEAD ML+MGF I I++ +P QTL+++AT P +
Sbjct: 131 RLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPI 190
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIF 708
++IA + P V + + +N I Q V + +K L ++L Q I+F
Sbjct: 191 KRIAERFMTEPEHVKVKAKEMTVSN--IQQFYLEVQERKKFDTLTRLLDIQSP-ELAIVF 247
Query: 709 CSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
TKR D+LA ++ R + A IHGD +Q +R L +F+ G +LVATDVAARGLDI
Sbjct: 248 GRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDI 307
Query: 768 KDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQD 809
+ V N+D P E YVHRI +A TF + ++
Sbjct: 308 SGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPRE 349
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 572 (206.4 bits), Expect = 3.2e-55, P = 3.2e-55
Identities = 125/356 (35%), Positives = 200/356 (56%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
V ++ G+ PTPIQ + P L +D++A A+TG+GKT + +P LL + +
Sbjct: 13 VDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHA 72
Query: 529 GPTV--LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
+ LVL PTRELA Q+Q K+ + + + YGG Q + G D+++AT
Sbjct: 73 AKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIAT 132
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
PGRL D L ++ Q++ LV DEADRMLDMGF +I+ ++ ++P RQTL+++AT
Sbjct: 133 PGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDD 192
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVI 706
+ + +LL +P ++ + + AA I Q V + K + ++R++ +V+
Sbjct: 193 SIFSFSKNLLRDPKRIEVAKPNTTAAQ--IEQRVYAIDSDRKTEFVSHLVRSKN-WQQVL 249
Query: 707 IFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
IF TK+ D+L + + + HGD SQG R+ VL +F+ G +LVATDVAARGL
Sbjct: 250 IFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGL 309
Query: 766 DIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
DI +++ VIN++ P EDY+HRI +A T FS++D+ ++ +L+
Sbjct: 310 DIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLD 365
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 572 (206.4 bits), Expect = 3.2e-55, P = 3.2e-55
Identities = 125/356 (35%), Positives = 200/356 (56%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
V ++ G+ PTPIQ + P L +D++A A+TG+GKT + +P LL + +
Sbjct: 13 VDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHA 72
Query: 529 GPTV--LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
+ LVL PTRELA Q+Q K+ + + + YGG Q + G D+++AT
Sbjct: 73 AKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIAT 132
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
PGRL D L ++ Q++ LV DEADRMLDMGF +I+ ++ ++P RQTL+++AT
Sbjct: 133 PGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDD 192
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVI 706
+ + +LL +P ++ + + AA I Q V + K + ++R++ +V+
Sbjct: 193 SIFSFSKNLLRDPKRIEVAKPNTTAAQ--IEQRVYAIDSDRKTEFVSHLVRSKN-WQQVL 249
Query: 707 IFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
IF TK+ D+L + + + HGD SQG R+ VL +F+ G +LVATDVAARGL
Sbjct: 250 IFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGL 309
Query: 766 DIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
DI +++ VIN++ P EDY+HRI +A T FS++D+ ++ +L+
Sbjct: 310 DIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLD 365
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 571 (206.1 bits), Expect = 4.1e-55, P = 4.1e-55
Identities = 134/360 (37%), Positives = 203/360 (56%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534
+G++ PTPIQ + P L G D+ +A+TG+GKT +++P L R P L+
Sbjct: 22 SGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRARARM-PRCLI 80
Query: 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL 594
L PTRELA Q+ + K+G+ +L+ L GG Q L +G D+++ATPGRL D
Sbjct: 81 LCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRLMDQF 140
Query: 595 EMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASD 654
+ K+ V L++DEADRMLDMGF P I KI ++P +RQTL+++AT+P D++++A
Sbjct: 141 DRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFSATFPTDIQRLAKT 200
Query: 655 LLVNPVQVNIGNVDELAANKAITQHVEVVPQME-KERR--LQQILRAQERGSRVIIFCST 711
+P ++ + + A + I+Q V +P + K RR L++++ A + I+FC+
Sbjct: 201 FQKDPKKIEVTRPAQTA--ETISQFVVKLPTNDGKARRTALRRVIEATNVKNG-IVFCNR 257
Query: 712 KRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
K D +A S+ ++ A IHGD Q R L +FR GK +LVA+DVAARGLDI D+
Sbjct: 258 KVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARGLDIPDV 317
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
V N+ P EDYVHRI ++T + D K +VK+++ PE
Sbjct: 318 GHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVVKMIKKDVPEFMPE 377
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 594 (214.2 bits), Expect = 5.0e-55, P = 5.0e-55
Identities = 131/357 (36%), Positives = 209/357 (58%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP-RN-- 528
+ F IQ QT P + GRD++AIA+TGSGKTL YL P ++ LH P RN
Sbjct: 738 LEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFP--VIRHVLHQEPLRNND 795
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
GP ++L PTREL+ Q+++EA + ++ + +YGG+ QL+ L +G +I+V TPG
Sbjct: 796 GPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPG 855
Query: 589 RLNDILEM---KKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
R+ DIL + K + +VS +VLDEADR+LD+GFE QI I+ +QT M +AT+P
Sbjct: 856 RIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATFP 915
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
++ +A LL P+++ +G + N I Q VE++ + +K RL ++L + V
Sbjct: 916 NYIQNMAKKLLYKPIEIIVGEKGK--TNNNIYQFVEIIEESKKVFRLLKLLGEWIKYGLV 973
Query: 706 IIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF + + D L + + ++ + +HG + Q +R + L +F+ ++ +L+AT V ARG
Sbjct: 974 LIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARG 1033
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
+DIK+I +VINY P+ +EDY+HRI A+TF + A D+ +L+
Sbjct: 1034 IDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAYDIYNLLK 1090
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 594 (214.2 bits), Expect = 5.0e-55, P = 5.0e-55
Identities = 131/357 (36%), Positives = 209/357 (58%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP-RN-- 528
+ F IQ QT P + GRD++AIA+TGSGKTL YL P ++ LH P RN
Sbjct: 738 LEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFP--VIRHVLHQEPLRNND 795
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
GP ++L PTREL+ Q+++EA + ++ + +YGG+ QL+ L +G +I+V TPG
Sbjct: 796 GPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPG 855
Query: 589 RLNDILEM---KKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645
R+ DIL + K + +VS +VLDEADR+LD+GFE QI I+ +QT M +AT+P
Sbjct: 856 RIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATFP 915
Query: 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRV 705
++ +A LL P+++ +G + N I Q VE++ + +K RL ++L + V
Sbjct: 916 NYIQNMAKKLLYKPIEIIVGEKGK--TNNNIYQFVEIIEESKKVFRLLKLLGEWIKYGLV 973
Query: 706 IIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
+IF + + D L + + ++ + +HG + Q +R + L +F+ ++ +L+AT V ARG
Sbjct: 974 LIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARG 1033
Query: 765 LDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLE 821
+DIK+I +VINY P+ +EDY+HRI A+TF + A D+ +L+
Sbjct: 1034 IDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAYDIYNLLK 1090
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 574 (207.1 bits), Expect = 7.4e-55, P = 7.4e-55
Identities = 134/363 (36%), Positives = 205/363 (56%)
Query: 461 EVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLR 520
E+ + P + ++ GFS PTPIQA+ P+AL G+DI+A A TGSGKT +L+P +L R
Sbjct: 194 ELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLP--VLER 251
Query: 521 QLHNNPR-NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQG 579
L + VL+L PTRELA Q Q + S ++ + GG Q EL +
Sbjct: 252 LLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKS 311
Query: 580 ADIVVATPGRLND-ILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTL 638
D+V+ATPGRL D +L I + +L+LDEADR+LDMGF+ +I KIV P +RQT+
Sbjct: 312 PDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTM 371
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERR---LQQI 695
+++AT +V+ +A L P++V + + ++ + + V++ PQ +R L
Sbjct: 372 LFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLE-QEFVKIKPQHLSDRPAILLSLC 430
Query: 696 LRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPI 754
R +G IIFC +K+ +L G + A +HG+ SQ +R L QFR G+
Sbjct: 431 TRVFNQGG-TIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNY 489
Query: 755 LVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAA 814
L+A+DVA+RGLDI ++ VINY+ PN + +Y+HR+ + +F ++ D K
Sbjct: 490 LLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLK 549
Query: 815 DLV 817
D+V
Sbjct: 550 DIV 552
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 568 (205.0 bits), Expect = 9.3e-55, P = 9.3e-55
Identities = 124/365 (33%), Positives = 212/365 (58%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ ++G+ PTPIQ Q P+ L GRD++A A TGSGKT +L+P ++ R L + P
Sbjct: 218 NLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLP--VITRALCESKT--P 273
Query: 531 TVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
+ L+L PTRELA QI+++A + R+ L GG P PQL L Q +++ATPGR
Sbjct: 274 SALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGR 333
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649
L DI++ ++ + ++V+DEAD ML MGF+ Q+ I+ +P QT++ +AT P +
Sbjct: 334 LLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIE 393
Query: 650 KIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR-VIIF 708
++AS LL NPV++ G + L + ++ Q + V + K+++L +IL ++ V++F
Sbjct: 394 QLASQLLHNPVRIITGEKN-LPCS-SVRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVF 451
Query: 709 CSTKRLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
K D L+ ++ + G +++IH +KSQ ER +L G ++V+T V RGLD
Sbjct: 452 VDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLD 511
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQH 826
+ +R+V+N+D P+ +++YVH++ A TF + + D+ K ++
Sbjct: 512 LISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSI 571
Query: 827 VPPEV 831
+PP++
Sbjct: 572 LPPQL 576
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 567 (204.7 bits), Expect = 1.2e-54, P = 1.2e-54
Identities = 130/352 (36%), Positives = 198/352 (56%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
V ++ S G+ TPIQA+T P L+G+D++ AKTGSGKT + LL +L
Sbjct: 22 VKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAF---GLALLNKLEVKKFR 78
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
+ +V+ PTRELA Q+ E K R + L GG P GPQ+ L+ GA ++V TP
Sbjct: 79 IQS-MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHVIVGTP 137
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL + + + ++LLVLDEADRML+MGF+ + IV P RQTL+++AT+P
Sbjct: 138 GRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTLLFSATFPDQ 197
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVII 707
++ I+ ++ +PV V I + ++ I+Q V + ++L + I
Sbjct: 198 IKSISESIMTDPVMVKIASSED---QSTISQKFFKVGNDDDRLDALRLLLLGNQVESTAI 254
Query: 708 FCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
FC+TK+ Q+A ++ + F +A+HGD Q +RD L +F + + ILVATDVAARGLD
Sbjct: 255 FCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLD 314
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVK 818
I + +VINY E +VHRI +A++ FS+++S Y L++
Sbjct: 315 IDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKES-YKVGLLE 365
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 567 (204.7 bits), Expect = 1.2e-54, P = 1.2e-54
Identities = 135/367 (36%), Positives = 205/367 (55%)
Query: 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI 517
Q ++S+ L + ++ GF TPIQAQT P+ L +D++ A+TG+GKT + IP
Sbjct: 6 QDFQLSSDLTK--AIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIP--- 60
Query: 518 LLRQLHNNPRNGPTV--LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575
L+ ++ NP + P + +V+APTRELA Q+ +E K G+ R +YGG G Q+R
Sbjct: 61 LVEKI--NPES-PNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRA 117
Query: 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHR 635
L + I+V TPGRL D + + + V+ +VLDEAD ML+MGF I I++ +P
Sbjct: 118 LKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEH 177
Query: 636 QTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQI 695
QTL+++AT P +++IA + NP V + + +N I Q V + +K L ++
Sbjct: 178 QTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSN--IQQFYLEVHERKKFDTLTRL 235
Query: 696 LRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPI 754
L Q I+F TKR D+L ++ R + A IHGD +Q +R L +F+ G +
Sbjct: 236 LDIQSP-ELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEV 294
Query: 755 LVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAA 814
LVATDVAARGLDI + V N+D P E YVHRI +A TF + ++
Sbjct: 295 LVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREK---- 350
Query: 815 DLVKVLE 821
D+++ +E
Sbjct: 351 DMLRAIE 357
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 567 (204.7 bits), Expect = 1.2e-54, P = 1.2e-54
Identities = 125/344 (36%), Positives = 194/344 (56%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
V ++ G+ PT IQ Q P+ LQGRD++A A+TG+GKT +++P LRQ +
Sbjct: 13 VQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKK 72
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
L+L PTRELA Q+ ++ ++G+ + L ++GG + Q + L G D++VATPG
Sbjct: 73 RVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPG 132
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
RL D+ + + F ++ ++VLDEADRMLDMGF I KI++ +P Q L+++AT + V
Sbjct: 133 RLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKV 192
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIF 708
R++A + +P +++I A+ I+Q + V + K L ++ Q+ + +IF
Sbjct: 193 RELAKTAVRDPHEISIAA--NQASKSNISQWLITVDKDTKSALLSHLINEQQ-WDQALIF 249
Query: 709 CSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
TK +L + R A A H +SQ R +L F+SGK LVAT VAARG+DI
Sbjct: 250 IETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDI 309
Query: 768 KDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSK 811
+ V+NYD P ++YVHRI A +F S+ + K
Sbjct: 310 DQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 567 (204.7 bits), Expect = 1.2e-54, P = 1.2e-54
Identities = 130/352 (36%), Positives = 198/352 (56%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
V ++ S G+ TPIQA+T P L+G+D++ AKTGSGKT + LL +L
Sbjct: 22 VKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAF---GLALLNKLEVKKFR 78
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATP 587
+ +V+ PTRELA Q+ E K R + L GG P GPQ+ L+ GA ++V TP
Sbjct: 79 IQS-MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHVIVGTP 137
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
GRL + + + ++LLVLDEADRML+MGF+ + IV P RQTL+++AT+P
Sbjct: 138 GRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTLLFSATFPDQ 197
Query: 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVII 707
++ I+ ++ +PV V I + ++ I+Q V + ++L + I
Sbjct: 198 IKSISESIMTDPVMVKIASSED---QSTISQKFFKVGNDDDRLDALRLLLLGNQVESTAI 254
Query: 708 FCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
FC+TK+ Q+A ++ + F +A+HGD Q +RD L +F + + ILVATDVAARGLD
Sbjct: 255 FCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLD 314
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVK 818
I + +VINY E +VHRI +A++ FS+++S Y L++
Sbjct: 315 IDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKES-YKVGLLE 365
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 567 (204.7 bits), Expect = 1.2e-54, P = 1.2e-54
Identities = 125/344 (36%), Positives = 194/344 (56%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
V ++ G+ PT IQ Q P+ LQGRD++A A+TG+GKT +++P LRQ +
Sbjct: 13 VQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKK 72
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
L+L PTRELA Q+ ++ ++G+ + L ++GG + Q + L G D++VATPG
Sbjct: 73 RVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPG 132
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
RL D+ + + F ++ ++VLDEADRMLDMGF I KI++ +P Q L+++AT + V
Sbjct: 133 RLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKV 192
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIF 708
R++A + +P +++I A+ I+Q + V + K L ++ Q+ + +IF
Sbjct: 193 RELAKTAVRDPHEISIAA--NQASKSNISQWLITVDKDTKSALLSHLINEQQ-WDQALIF 249
Query: 709 CSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
TK +L + R A A H +SQ R +L F+SGK LVAT VAARG+DI
Sbjct: 250 IETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDI 309
Query: 768 KDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSK 811
+ V+NYD P ++YVHRI A +F S+ + K
Sbjct: 310 DQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 566 (204.3 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 128/374 (34%), Positives = 202/374 (54%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN-NP--- 526
++ +AG+ PTPIQ Q P AL G+ ++A A TGSGKT +L+P H+ +P
Sbjct: 124 NLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQ 183
Query: 527 RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
R P +VLAPTREL Q++D+A G+ + GG P QL + QG ++++ T
Sbjct: 184 RRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGT 243
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
PGR+ D+L I+ + VLDE D ML GF Q+ +I + Q L+++AT +
Sbjct: 244 PGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISR 302
Query: 647 DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR-V 705
+V K+ L + V+IGN ++ NKA+ Q V +K+++L ILR+Q
Sbjct: 303 EVEKVGGSLAKEIILVSIGNPNK--PNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPA 360
Query: 706 IIFCSTKRLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAAR 763
+++ S++ D LA +I G A++IHG+K ER V+ F G+ P+LV+T V R
Sbjct: 361 VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGR 420
Query: 764 GLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGA 823
G+D+ +R VI +D P+ +++Y+H I A F +E D DLV L+ +
Sbjct: 421 GVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSS 480
Query: 824 NQHVPPEVRDMALR 837
+P E+ ++ R
Sbjct: 481 GAAIPKELINLTSR 494
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 565 (203.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 130/356 (36%), Positives = 200/356 (56%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ G + TPIQ + P+ L G+DI+ AKTG+GKTL +++P +L ++ +P +
Sbjct: 19 TLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP---ILEKI--DPESSD 73
Query: 531 T-VLVLAPTRELATQIQDEANKF-GRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
L++APTRELA QI E K + ++ +YGG QLR+L IVVATPG
Sbjct: 74 VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPG 133
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
RL D + + ID +S +VLDEAD+ML GF I I++E P +QT++++AT PKD+
Sbjct: 134 RLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDI 193
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIF 708
+K+A + P + + + +E+ + I Q V K L+ ++ +++ +IF
Sbjct: 194 KKLAKRYMDEPQMIQVQS-EEVTVD-TIEQRVIETTDRAKPDALRFVMD-RDQPFLAVIF 250
Query: 709 CSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
C TK +L ++ G + +HGD Q +R+ V+ FR K L+ATDVAARGLD+
Sbjct: 251 CRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDV 310
Query: 768 KDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGA 823
+ V NYD P VE Y+HRI +A TF + +D K+ ++ K L GA
Sbjct: 311 DGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTL-GA 365
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 565 (203.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 130/356 (36%), Positives = 200/356 (56%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ G + TPIQ + P+ L G+DI+ AKTG+GKTL +++P +L ++ +P +
Sbjct: 19 TLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP---ILEKI--DPESSD 73
Query: 531 T-VLVLAPTRELATQIQDEANKF-GRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
L++APTRELA QI E K + ++ +YGG QLR+L IVVATPG
Sbjct: 74 VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPG 133
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
RL D + + ID +S +VLDEAD+ML GF I I++E P +QT++++AT PKD+
Sbjct: 134 RLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDI 193
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIF 708
+K+A + P + + + +E+ + I Q V K L+ ++ +++ +IF
Sbjct: 194 KKLAKRYMDEPQMIQVQS-EEVTVD-TIEQRVIETTDRAKPDALRFVMD-RDQPFLAVIF 250
Query: 709 CSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
C TK +L ++ G + +HGD Q +R+ V+ FR K L+ATDVAARGLD+
Sbjct: 251 CRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDV 310
Query: 768 KDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGA 823
+ V NYD P VE Y+HRI +A TF + +D K+ ++ K L GA
Sbjct: 311 DGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTL-GA 365
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 563 (203.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 134/367 (36%), Positives = 196/367 (53%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
S+ S GF TPIQA+T P ALQG+DI+ A+TG+GKT + +P + H G
Sbjct: 16 SVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV-DTHKESVQG- 73
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
+V+APTRELA Q+ +E K G+ R+ +YGG Q+R L + I+V TPGR+
Sbjct: 74 --IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D + K + V +VLDEAD ML+MGF I I+ ++P QTL+++AT P +R+
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRR 191
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
IA + P + + + N I Q V + +K L ++L Q I+F
Sbjct: 192 IAERFMTEPQHIKVKAKEVTMPN--IQQFYLEVQEKKKFDVLTRLLDIQSP-ELAIVFGR 248
Query: 711 TKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
TKR D+L+ ++ R + A IHGD +Q +R VL +F+ G +LVATDVAARGLDI
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPP 829
+ V N+D P E YVHRI +A F + ++S ++ + + +
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDA 368
Query: 830 EVRDMAL 836
D AL
Sbjct: 369 PTLDEAL 375
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 563 (203.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 134/367 (36%), Positives = 196/367 (53%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
S+ S GF TPIQA+T P ALQG+DI+ A+TG+GKT + +P + H G
Sbjct: 16 SVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV-DTHKESVQG- 73
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
+V+APTRELA Q+ +E K G+ R+ +YGG Q+R L + I+V TPGR+
Sbjct: 74 --IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D + K + V +VLDEAD ML+MGF I I+ ++P QTL+++AT P +R+
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRR 191
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
IA + P + + + N I Q V + +K L ++L Q I+F
Sbjct: 192 IAERFMTEPQHIKVKAKEVTMPN--IQQFYLEVQEKKKFDVLTRLLDIQSP-ELAIVFGR 248
Query: 711 TKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
TKR D+L+ ++ R + A IHGD +Q +R VL +F+ G +LVATDVAARGLDI
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPP 829
+ V N+D P E YVHRI +A F + ++S ++ + + +
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDA 368
Query: 830 EVRDMAL 836
D AL
Sbjct: 369 PTLDEAL 375
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 563 (203.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 134/367 (36%), Positives = 196/367 (53%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
S+ S GF TPIQA+T P ALQG+DI+ A+TG+GKT + +P + H G
Sbjct: 16 SVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV-DTHKESVQG- 73
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
+V+APTRELA Q+ +E K G+ R+ +YGG Q+R L + I+V TPGR+
Sbjct: 74 --IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D + K + V +VLDEAD ML+MGF I I+ ++P QTL+++AT P +R+
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRR 191
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
IA + P + + + N I Q V + +K L ++L Q I+F
Sbjct: 192 IAERFMTEPQHIKVKAKEVTMPN--IQQFYLEVQEKKKFDVLTRLLDIQSP-ELAIVFGR 248
Query: 711 TKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
TKR D+L+ ++ R + A IHGD +Q +R VL +F+ G +LVATDVAARGLDI
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPP 829
+ V N+D P E YVHRI +A F + ++S ++ + + +
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDA 368
Query: 830 EVRDMAL 836
D AL
Sbjct: 369 PTLDEAL 375
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 563 (203.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 134/367 (36%), Positives = 196/367 (53%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
S+ S GF TPIQA+T P ALQG+DI+ A+TG+GKT + +P + H G
Sbjct: 16 SVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV-DTHKESVQG- 73
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
+V+APTRELA Q+ +E K G+ R+ +YGG Q+R L + I+V TPGR+
Sbjct: 74 --IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D + K + V +VLDEAD ML+MGF I I+ ++P QTL+++AT P +R+
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRR 191
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
IA + P + + + N I Q V + +K L ++L Q I+F
Sbjct: 192 IAERFMTEPQHIKVKAKEVTMPN--IQQFYLEVQEKKKFDVLTRLLDIQSP-ELAIVFGR 248
Query: 711 TKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
TKR D+L+ ++ R + A IHGD +Q +R VL +F+ G +LVATDVAARGLDI
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPP 829
+ V N+D P E YVHRI +A F + ++S ++ + + +
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDA 368
Query: 830 EVRDMAL 836
D AL
Sbjct: 369 PTLDEAL 375
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 563 (203.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 134/367 (36%), Positives = 196/367 (53%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
S+ S GF TPIQA+T P ALQG+DI+ A+TG+GKT + +P + H G
Sbjct: 16 SVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV-DTHKESVQG- 73
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
+V+APTRELA Q+ +E K G+ R+ +YGG Q+R L + I+V TPGR+
Sbjct: 74 --IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D + K + V +VLDEAD ML+MGF I I+ ++P QTL+++AT P +R+
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRR 191
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
IA + P + + + N I Q V + +K L ++L Q I+F
Sbjct: 192 IAERFMTEPQHIKVKAKEVTMPN--IQQFYLEVQEKKKFDVLTRLLDIQSP-ELAIVFGR 248
Query: 711 TKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
TKR D+L+ ++ R + A IHGD +Q +R VL +F+ G +LVATDVAARGLDI
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPP 829
+ V N+D P E YVHRI +A F + ++S ++ + + +
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDA 368
Query: 830 EVRDMAL 836
D AL
Sbjct: 369 PTLDEAL 375
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 563 (203.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 134/367 (36%), Positives = 196/367 (53%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
S+ S GF TPIQA+T P ALQG+DI+ A+TG+GKT + +P + H G
Sbjct: 16 SVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV-DTHKESVQG- 73
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
+V+APTRELA Q+ +E K G+ R+ +YGG Q+R L + I+V TPGR+
Sbjct: 74 --IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D + K + V +VLDEAD ML+MGF I I+ ++P QTL+++AT P +R+
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRR 191
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
IA + P + + + N I Q V + +K L ++L Q I+F
Sbjct: 192 IAERFMTEPQHIKVKAKEVTMPN--IQQFYLEVQEKKKFDVLTRLLDIQSP-ELAIVFGR 248
Query: 711 TKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
TKR D+L+ ++ R + A IHGD +Q +R VL +F+ G +LVATDVAARGLDI
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPP 829
+ V N+D P E YVHRI +A F + ++S ++ + + +
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDA 368
Query: 830 EVRDMAL 836
D AL
Sbjct: 369 PTLDEAL 375
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 563 (203.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 134/367 (36%), Positives = 196/367 (53%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
S+ S GF TPIQA+T P ALQG+DI+ A+TG+GKT + +P + H G
Sbjct: 16 SVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKV-DTHKESVQG- 73
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
+V+APTRELA Q+ +E K G+ R+ +YGG Q+R L + I+V TPGR+
Sbjct: 74 --IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D + K + V +VLDEAD ML+MGF I I+ ++P QTL+++AT P +R+
Sbjct: 132 LDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRR 191
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
IA + P + + + N I Q V + +K L ++L Q I+F
Sbjct: 192 IAERFMTEPQHIKVKAKEVTMPN--IQQFYLEVQEKKKFDVLTRLLDIQSP-ELAIVFGR 248
Query: 711 TKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
TKR D+L+ ++ R + A IHGD +Q +R VL +F+ G +LVATDVAARGLDI
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPP 829
+ V N+D P E YVHRI +A F + ++S ++ + + +
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDA 368
Query: 830 EVRDMAL 836
D AL
Sbjct: 369 PTLDEAL 375
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 561 (202.5 bits), Expect = 5.8e-54, P = 5.8e-54
Identities = 133/352 (37%), Positives = 190/352 (53%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN-PR 527
V ++ G P IQ T P+AL G D++ A+TG GKT + +P + P
Sbjct: 22 VRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTRPL 81
Query: 528 NG-PTVLVLAPTRELATQIQDE---ANKF---GRSS--------RLSCTCLYGGAPKGPQ 572
G P LV+ PTREL Q+ D+ A K+ G + RLS +YGG P PQ
Sbjct: 82 TGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQ 141
Query: 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632
+ L GAD+VV TPGRL D+ + + G +S+LVLDEAD MLD+GF P I +I+ ++P
Sbjct: 142 IEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIP 201
Query: 633 PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRL 692
RQ+++++AT P + +A +V P + A + A Q V ++K +
Sbjct: 202 ADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHALDKVELV 261
Query: 693 QQILRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGK 751
++L+A++RG+ +IF TKR ++A + R F A+HGD Q R+ L FR+G
Sbjct: 262 SRVLQARDRGA-TMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGG 320
Query: 752 SPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHT 803
+LVATDVAARG+DI D+ VINY P + YVHRI VA T
Sbjct: 321 IDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVT 372
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 558 (201.5 bits), Expect = 1.3e-53, P = 1.3e-53
Identities = 136/363 (37%), Positives = 198/363 (54%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPT-VLV 534
GF TPIQA+T P++LQ +D++ A+TG+GKT + IP ++ ++ N +N LV
Sbjct: 21 GFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP---IVEKV--NVKNSAVQALV 75
Query: 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL 594
+APTRELA Q+ +E K G R+ +YGG Q+R L + ++V TPGR+ D +
Sbjct: 76 VAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHI 135
Query: 595 EMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASD 654
+ V +VLDEAD ML+MGF I I++ +P RQTL+++AT P +R+IA
Sbjct: 136 NRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAER 195
Query: 655 LLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRL 714
+ P V + + N I Q+ V + +K L ++L Q I+F TKR
Sbjct: 196 FMNEPELVKVKAKEMTVPN--IQQYYLEVHEKKKFDILTRLLDIQAP-ELAIVFGRTKRR 252
Query: 715 CDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVV 773
D+LA ++ R + A IHGD SQ +R VL +F+ G ILVATDVAARGLDI + V
Sbjct: 253 VDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHV 312
Query: 774 INYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRD 833
N+D P E YVHRI VA TF + ++ + + + + + P D
Sbjct: 313 YNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLD 372
Query: 834 MAL 836
AL
Sbjct: 373 EAL 375
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 554 (200.1 bits), Expect = 3.7e-53, P = 3.7e-53
Identities = 130/398 (32%), Positives = 213/398 (53%)
Query: 439 PTFMGSPGVTDLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIV 498
P M GV + + EVY +++ + ++ GF P+ IQ + ++GRD++
Sbjct: 12 PASMEPEGVIESTWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVI 71
Query: 499 AIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558
A A++G+GKT + I +L+Q+ + R L+LAPTRELATQIQ G ++
Sbjct: 72 AQAQSGTGKTATFSIA---ILQQIDTSIRECQA-LILAPTRELATQIQRVVMALGEYMKV 127
Query: 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM 618
GG R L+ G +VV TPGR+ D++ K + + L VLDEAD ML
Sbjct: 128 HSHACIGGTNVREDARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSR 187
Query: 619 GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQ 678
GF+ QI+ + +PP Q ++ +AT P DV +++ + +PV + + +EL + I Q
Sbjct: 188 GFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKK-EELTL-EGIKQ 245
Query: 679 -HVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKS 736
+V V + K L + ++ +IFC+T+R DQL + + NF A+HGD
Sbjct: 246 FYVNVKQENWKLGTLCDLYDTLSI-TQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDME 304
Query: 737 QGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXX 796
Q +R+ ++ QFRSG S +L+ TD+ ARG+D++ + +VINYD P+ E+Y+HRI
Sbjct: 305 QRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFG 364
Query: 797 XXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDM 834
VA F ++ D + D+ + + +P + D+
Sbjct: 365 RKGVAINFITDDDRRILKDIEQFYHTTIEEMPANIADL 402
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 554 (200.1 bits), Expect = 3.7e-53, P = 3.7e-53
Identities = 123/366 (33%), Positives = 208/366 (56%)
Query: 470 ASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529
+++ ++G+ PTPIQ Q P+ L GRDIVA A TGSGKT +L+P ++++ L N
Sbjct: 222 SNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLP--VIMKVL--NETET 277
Query: 530 PTVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
P+ L+LAPTRELA QI+ +A + + L GG P PQL L Q +++ATPG
Sbjct: 278 PSALILAPTRELAIQIERQAKELMAGLPNMRTVLLVGGLPLPPQLHRLKQSVKVIIATPG 337
Query: 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV 648
RL +IL + + ++V+DE D ML MGF+ Q+ I+ ++ QT++ +AT P +
Sbjct: 338 RLLEILRQSSVQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDISHDHQTILVSATIPVGI 397
Query: 649 RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR-VII 707
+A+ LL N V++ IG + +N + Q + V + K+++L +IL ++ V++
Sbjct: 398 EHLANQLLHNFVRITIGEKNLPCSN--VRQIILWVEEPSKKKKLFEILNDKKLFKPPVLV 455
Query: 708 FCSTKRLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765
F K D L+ ++ + G ++H +KSQ ER +L K ++V+T V RGL
Sbjct: 456 FVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEVIVSTGVLGRGL 515
Query: 766 DIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQ 825
D+ ++++V+N+D P+ +++YVH++ A TF + K D+VK ++
Sbjct: 516 DLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWDVVKRVKPTGT 575
Query: 826 HVPPEV 831
+PP++
Sbjct: 576 ILPPQL 581
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 554 (200.1 bits), Expect = 3.7e-53, P = 3.7e-53
Identities = 127/342 (37%), Positives = 188/342 (54%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535
G+ PT +Q + P+ALQ +D+V ++TGSGKT + IP L ++ N P LVL
Sbjct: 23 GYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIP----LCEMVEWEENKPQALVL 78
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTRELA Q++++ GR R+ +YG +P Q EL Q IVV TPGR+ D +E
Sbjct: 79 TPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRVLDHIE 138
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
+ ++ LV+DEAD ML+MGF Q+ I++E+P R T++++AT P+DV +++
Sbjct: 139 KGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRTY 198
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLC 715
+ P + I + +K I + V + EK L+ + + S IIFC T+
Sbjct: 199 MNAPTHIEI-KAAGITTDK-IEHTLFEVREEEKLSLLKDVTTIENPDS-CIIFCRTQENV 255
Query: 716 DQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI 774
D + R + R N+ IHG Q +R V++ FR GK LVATDVAARG+DI +I VI
Sbjct: 256 DHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVI 315
Query: 775 NYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADL 816
NYD P E YVHR A TF + + ++ ++
Sbjct: 316 NYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 554 (200.1 bits), Expect = 3.7e-53, P = 3.7e-53
Identities = 127/342 (37%), Positives = 188/342 (54%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535
G+ PT +Q + P+ALQ +D+V ++TGSGKT + IP L ++ N P LVL
Sbjct: 23 GYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIP----LCEMVEWEENKPQALVL 78
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTRELA Q++++ GR R+ +YG +P Q EL Q IVV TPGR+ D +E
Sbjct: 79 TPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRVLDHIE 138
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
+ ++ LV+DEAD ML+MGF Q+ I++E+P R T++++AT P+DV +++
Sbjct: 139 KGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRTY 198
Query: 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLC 715
+ P + I + +K I + V + EK L+ + + S IIFC T+
Sbjct: 199 MNAPTHIEI-KAAGITTDK-IEHTLFEVREEEKLSLLKDVTTIENPDS-CIIFCRTQENV 255
Query: 716 DQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI 774
D + R + R N+ IHG Q +R V++ FR GK LVATDVAARG+DI +I VI
Sbjct: 256 DHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVI 315
Query: 775 NYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADL 816
NYD P E YVHR A TF + + ++ ++
Sbjct: 316 NYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357
>UNIPROTKB|B7Z5N6 [details] [associations]
symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
UCSC:uc010ppl.1 Uniprot:B7Z5N6
Length = 567
Score = 553 (199.7 bits), Expect = 4.7e-53, P = 4.7e-53
Identities = 124/331 (37%), Positives = 198/331 (59%)
Query: 465 TLPRVAS--MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQL 522
+LP V + + +G+ PTPIQ Q P+ L GRDI+A A TGSGKT +L+P +++R L
Sbjct: 209 SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLP--VIMRAL 266
Query: 523 HNNPRNGPTVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGAD 581
+ P+ L+L PTRELA QI+ +A + R+ L GG P PQL L Q
Sbjct: 267 FESKT--PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVK 324
Query: 582 IVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641
+++ATPGRL DI++ ++ V ++V+DEAD ML MGF+ Q+ I+ +P QT++ +
Sbjct: 325 VIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVS 384
Query: 642 ATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQER 701
AT P + ++AS LL NPV++ G + AN + Q + V K+++L +IL ++
Sbjct: 385 ATIPTSIEQLASQLLHNPVRIITGEKNLPCAN--VRQIILWVEDPAKKKKLFEILNDKKL 442
Query: 702 GSR-VIIFCSTKRLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKSPILVAT 758
V++F K D L+ ++ + G +I+IH +KSQ ER +L G ++V+T
Sbjct: 443 FKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVST 502
Query: 759 DVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
V RGLD+ +R+V+N+D P+ +++YVH++
Sbjct: 503 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQL 533
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 550 (198.7 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 121/365 (33%), Positives = 205/365 (56%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ +G+ PTPIQ Q P+ L GRDI+A A TGSGKT +L+P +++R + P
Sbjct: 217 NLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLP--VIIRAFSEDKT--P 272
Query: 531 TVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
+ L+L PTRELA QI+ +A + R+ L GG P PQL L Q +++ATPGR
Sbjct: 273 SALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGR 332
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649
L DI++ + + ++V+DEAD ML MGF+ Q+ ++ P QT++ +AT P +
Sbjct: 333 LLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIE 392
Query: 650 KIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR-VIIF 708
++ LL NPV++ G+ + A+ + Q + V K+++L +IL Q+ V++F
Sbjct: 393 QLTDQLLHNPVRIITGDKNLPCAS--VRQIILWVEDPAKKKKLFEILNDQKLFKPPVLVF 450
Query: 709 CSTKRLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
K D L+ ++ + G + +IH +KSQ ER +L G ++V+T V RGLD
Sbjct: 451 VDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLD 510
Query: 767 IKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQH 826
+ ++++V+N+D P+ +++YVH++ A TF + + D+ K ++
Sbjct: 511 LVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSI 570
Query: 827 VPPEV 831
+PP++
Sbjct: 571 LPPQL 575
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 544 (196.6 bits), Expect = 4.8e-52, P = 4.8e-52
Identities = 117/323 (36%), Positives = 197/323 (60%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ ++G+ PTPIQ Q P+ L GRD++A A TGSGKT +L+P ++ R L + P
Sbjct: 218 NLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLP--VITRALCESKT--P 273
Query: 531 TVLVLAPTRELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
+ L+L PTRELA QI+++A + R+ L GG P PQL L Q +++ATPGR
Sbjct: 274 SALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGR 333
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649
L DI++ ++ + ++V+DEAD ML MGF+ Q+ I+ +P QT++ +AT P +
Sbjct: 334 LLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIE 393
Query: 650 KIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR-VIIF 708
++AS LL NPV++ G + L + ++ Q + V + K+++L +IL ++ V++F
Sbjct: 394 QLASQLLHNPVRIITGEKN-LPCS-SVRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVF 451
Query: 709 CSTKRLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
K D L+ ++ + G +++IH +KSQ ER +L G ++V+T V RGLD
Sbjct: 452 VDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLD 511
Query: 767 IKDIRVVINYDFPNGVEDYVHRI 789
+ +R+V+N+D P+ +++YVH++
Sbjct: 512 LISVRLVVNFDMPSSMDEYVHQV 534
WARNING: HSPs involving 735 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1134 835 0.00080 122 3 11 22 0.43 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 985
No. of states in DFA: 620 (66 KB)
Total size of DFA: 397 KB (2192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 73.66u 0.14s 73.80t Elapsed: 00:00:03
Total cpu time: 73.72u 0.14s 73.86t Elapsed: 00:00:03
Start: Thu May 9 23:13:03 2013 End: Thu May 9 23:13:06 2013
WARNINGS ISSUED: 2