BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047890
(1134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 298 bits (763), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/378 (44%), Positives = 232/378 (61%), Gaps = 21/378 (5%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI---------LLRQLHNNPR 527
++ PTP+Q PI + RD++A A+TGSGKT +L+P LR + N R
Sbjct: 35 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94
Query: 528 NG-----PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADI 582
G P LVLAPTRELA QI +EA KF SR+ +YGGA G Q+R+L++G +
Sbjct: 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 154
Query: 583 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPPH--RQTL 638
+VATPGRL D++E KI LVLDEADRMLDMGFEPQIR+IV + MPP R T+
Sbjct: 155 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 214
Query: 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698
M++AT+PK+++ +A D L + + +G V + N ITQ V V + +K L +L A
Sbjct: 215 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--ITQKVVWVEESDKRSFLLDLLNA 272
Query: 699 QERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757
+ S ++F TK+ D L + + +IHGD+SQ +R+ L+QFRSGKSPILVA
Sbjct: 273 TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 332
Query: 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLV 817
T VAARGLDI +++ VIN+D P+ +E+YVHRI +A +FF+E++ DL+
Sbjct: 333 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 392
Query: 818 KVLEGANQHVPPEVRDMA 835
+L A Q VP + +MA
Sbjct: 393 DLLVEAKQEVPSWLENMA 410
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 273 bits (698), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 227/381 (59%), Gaps = 11/381 (2%)
Query: 459 RHEVSATLPRVA--SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF 516
+H SA L + +++ +G+ PTPIQ + P+ GRD++A A+TGSGKT +L+P
Sbjct: 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPIL 115
Query: 517 I-LLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575
LL H P V++++PTRELA QI +EA KF S L +YGG Q
Sbjct: 116 SKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC 175
Query: 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPP 633
+ +G +V+ATPGRL D ++ I F +VLDEADRMLDMGF +R+I+ M P
Sbjct: 176 ITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP 235
Query: 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693
QTLM++AT+P++++++A + L N V V IG V A + Q + V + K +L
Sbjct: 236 EHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG--GACSDVKQTIYEVNKYAKRSKLI 293
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKS 752
+IL Q G+ I+F TKR D LA + + F +IHGD+ Q +R+ L F++G
Sbjct: 294 EILSEQADGT--IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 351
Query: 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFS-EQDSK 811
+L+AT VA+RGLDIK+I+ VINYD P+ ++DYVHRI A +FF E+D
Sbjct: 352 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRA 411
Query: 812 YAADLVKVLEGANQHVPPEVR 832
AADLVK+LEG+ Q VP +R
Sbjct: 412 IAADLVKILEGSGQTVPDFLR 432
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 237 bits (604), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 111/193 (57%), Positives = 147/193 (76%), Gaps = 1/193 (0%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 108
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 109 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 168
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 169 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 228
Query: 656 LVNPVQVNIGNVD 668
L + + +NIG ++
Sbjct: 229 LKDYIHINIGALE 241
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 236 bits (602), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 145/190 (76%), Gaps = 1/190 (0%)
Query: 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGPTVLVL 535
F+ PT IQAQ WP+AL G D+V +A+TGSGKTL YL+PA + + R +GP LVL
Sbjct: 63 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 122
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA Q+Q A ++ R+ RL TC+YGGAPKGPQ+R+L++G +I +ATPGRL D LE
Sbjct: 123 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 182
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
K + + + LVLDEADRMLDMGFEPQIRKIV+++ P RQTLM++ATWPK+VR++A D
Sbjct: 183 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 242
Query: 656 LVNPVQVNIG 665
L + + +NIG
Sbjct: 243 LKDYIHINIG 252
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 195/366 (53%), Gaps = 7/366 (1%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPT 531
+++ GF P+ IQ + ++GRD++A +++G+GKT + I +L+ L R
Sbjct: 53 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS---VLQCLDIQVRETQA 109
Query: 532 VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLN 591
L+LAPTRELA QIQ G + C GG G +R+LD G +V TPGR+
Sbjct: 110 -LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 168
Query: 592 DILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
D++ + + + +LVLDEAD ML+ GF+ QI + +PP Q ++ +AT P ++ ++
Sbjct: 169 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 228
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCST 711
+ + +P+++ + DEL + I Q V + E + L ++ +IFC+T
Sbjct: 229 TNKFMTDPIRILVKR-DELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT 286
Query: 712 KRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
KR D L + NF ++HGD Q ER+ ++ +FRSG S +L++TDV ARGLD+ +
Sbjct: 287 KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 346
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
++INYD PN E Y+HRI VA F D + D+ + +P
Sbjct: 347 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406
Query: 831 VRDMAL 836
V D+ L
Sbjct: 407 VADLIL 412
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 195/366 (53%), Gaps = 7/366 (1%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPT 531
+++ GF P+ IQ + ++GRD++A +++G+GKT + I +L+ L R
Sbjct: 31 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS---VLQCLDIQVRETQA 87
Query: 532 VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLN 591
L+LAPTRELA QIQ G + C GG G +R+LD G +V TPGR+
Sbjct: 88 -LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 146
Query: 592 DILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
D++ + + + +LVLDEAD ML+ GF+ QI + +PP Q ++ +AT P ++ ++
Sbjct: 147 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 206
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCST 711
+ + +P+++ + DEL + I Q V + E + L ++ +IFC+T
Sbjct: 207 TNKFMTDPIRILVKR-DELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT 264
Query: 712 KRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
KR D L + NF ++HGD Q ER+ ++ +FRSG S +L++TDV ARGLD+ +
Sbjct: 265 KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 324
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
++INYD PN E Y+HRI VA F D + D+ + +P
Sbjct: 325 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 384
Query: 831 VRDMAL 836
V D+ L
Sbjct: 385 VADLIL 390
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 206 bits (524), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 194/364 (53%), Gaps = 7/364 (1%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPT 531
+++ GF P+ IQ + ++GRD++A +++G+GKT + I +L+ L R
Sbjct: 52 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS---VLQCLDIQVRETQA 108
Query: 532 VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLN 591
L+LAPTRELA QIQ G + C GG G +R+LD G +V TPGR+
Sbjct: 109 -LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 167
Query: 592 DILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
D++ + + + +LVLDEAD ML+ GF+ QI + +PP Q ++ +AT P ++ ++
Sbjct: 168 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 227
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCST 711
+ + +P+++ + DEL + I Q V + E + L ++ +IFC+T
Sbjct: 228 TNKFMTDPIRILVKR-DELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT 285
Query: 712 KRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
KR D L + NF ++HGD Q ER+ ++ +FRSG S +L++TDV ARGLD+ +
Sbjct: 286 KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
++INYD PN E Y+HRI VA F D + D+ + +P
Sbjct: 346 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405
Query: 831 VRDM 834
V D+
Sbjct: 406 VADL 409
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 206 bits (523), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 194/364 (53%), Gaps = 7/364 (1%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPT 531
+++ GF P+ IQ + ++GRD++A +++G+GKT + I +L+ L R
Sbjct: 53 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS---VLQCLDIQVRETQA 109
Query: 532 VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLN 591
L+LAPTRELA QIQ G + C GG G +R+LD G +V TPGR+
Sbjct: 110 -LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 168
Query: 592 DILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
D++ + + + +LVLDEAD ML+ GF+ QI + +PP Q ++ +AT P ++ ++
Sbjct: 169 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 228
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCST 711
+ + +P+++ + DEL + I Q V + E + L ++ +IFC+T
Sbjct: 229 TNKFMTDPIRILVKR-DELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT 286
Query: 712 KRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
KR D L + NF ++HGD Q ER+ ++ +FRSG S +L++TDV ARGLD+ +
Sbjct: 287 KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 346
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
++INYD PN E Y+HRI VA F D + D+ + +P
Sbjct: 347 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406
Query: 831 VRDM 834
V D+
Sbjct: 407 VADL 410
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 194/364 (53%), Gaps = 7/364 (1%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPT 531
+++ GF P+ IQ + ++GRD++A +++G+GKT + + +L+ L R
Sbjct: 16 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVS---VLQCLDIQVRETQA 72
Query: 532 VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLN 591
L+LAPTRELA Q+Q G + C GG G +R+LD G +V TPGR+
Sbjct: 73 -LILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 131
Query: 592 DILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
D++ + + + +LVLDEAD ML+ GF+ QI + +PP Q ++ +AT P ++ ++
Sbjct: 132 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 191
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCST 711
+ + +P+++ + DEL + I Q V + E + L ++ +IFC+T
Sbjct: 192 TNKFMTDPIRILVKR-DELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT 249
Query: 712 KRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
KR D L + NF ++HGD Q ER+ ++ +FRSG S +L++TDV ARGLD+ +
Sbjct: 250 KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 309
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
++INYD PN E Y+HRI VA F D + D+ + +P
Sbjct: 310 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQIDEMPMN 369
Query: 831 VRDM 834
V D+
Sbjct: 370 VADL 373
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 179/320 (55%), Gaps = 11/320 (3%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR-NGP 530
+ AGF P+PIQ + P+A+ GRDI+A AK G+GKT ++IP ++ P+ N
Sbjct: 36 IFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVK-----PKLNKI 90
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
L++ PTRELA Q G+ +SC GG + L++ I+V TPGR+
Sbjct: 91 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRV 150
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D+ K D SL ++DEAD+ML F+ I +I++ +PP Q+L+++AT+P V++
Sbjct: 151 LDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKE 210
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
L P ++N+ ++EL K ITQ+ V + +K L + ++ + ++ IIFC+
Sbjct: 211 FMVKHLHKPYEINL--MEELTL-KGITQYYAFVEERQKLHCLNTLF-SKLQINQAIIFCN 266
Query: 711 TKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
+ + LA+ I + H Q ER+ V ++FR GK LV +D+ RG+DI+
Sbjct: 267 STNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326
Query: 770 IRVVINYDFPNGVEDYVHRI 789
+ VVIN+DFP E Y+HRI
Sbjct: 327 VNVVINFDFPKTAETYLHRI 346
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 193/364 (53%), Gaps = 7/364 (1%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPT 531
+++ GF P+ IQ + ++GRD++A +++G+GKT + + +L+ L R
Sbjct: 16 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVS---VLQCLDIQVRETQA 72
Query: 532 VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLN 591
L+LAPTRELA Q+Q G + GG G +R+LD G +V TPGR+
Sbjct: 73 -LILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 131
Query: 592 DILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
D++ + + + +LVLDEAD ML+ GF+ QI + +PP Q ++ +AT P +V ++
Sbjct: 132 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEVLEM 191
Query: 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCST 711
+ + +P+++ + DEL + I Q V + E + L ++ +IFC+T
Sbjct: 192 TNKFMTDPIRILVKR-DELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT 249
Query: 712 KRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
KR D L + NF ++HGD Q ER+ ++ +FRSG S +L++TDV ARGLD+ +
Sbjct: 250 KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 309
Query: 771 RVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830
++INYD PN E Y+HRI VA F D + D+ + +P
Sbjct: 310 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQIDEMPMN 369
Query: 831 VRDM 834
V D+
Sbjct: 370 VADL 373
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 133/198 (67%), Gaps = 3/198 (1%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ--LHNNP 526
+ S+ G PTPIQ+Q WPI LQG D++ +A+TG+GKTL YL+P FI L +
Sbjct: 32 LKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQ 91
Query: 527 RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVAT 586
RNGP +LVL PTRELA ++ E +K+ L C+YGG + Q+ ++ +G DI++AT
Sbjct: 92 RNGPGMLVLTPTRELALHVEAECSKYSYKG-LKSICIYGGRNRNGQIEDISKGVDIIIAT 150
Query: 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
PGRLND+ ++ ++ LV+DEAD+MLDM FEPQIRKI+ ++ P RQT+M +ATWP
Sbjct: 151 PGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPD 210
Query: 647 DVRKIASDLLVNPVQVNI 664
VR++A L +P+ V +
Sbjct: 211 TVRQLALSYLKDPMIVYV 228
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 191 bits (486), Expect = 2e-48, Method: Composition-based stats.
Identities = 122/340 (35%), Positives = 182/340 (53%), Gaps = 24/340 (7%)
Query: 456 YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGR-DIVAIAKTGSGKTLGYLIP 514
Y +E++ + + ++ + GF PT IQ + P+ L +IVA A+TGSGKT + IP
Sbjct: 5 YXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIP 64
Query: 515 AFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574
L+ N NG ++L PTRELA Q+ DE + L +YGG PQ++
Sbjct: 65 LIELV-----NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK 119
Query: 575 ELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH 634
L + A+IVV TPGR+ D + ++ V +LDEAD L+ GF + KI+N
Sbjct: 120 AL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKD 178
Query: 635 RQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAA--NKAITQHVEVVPQMEKERRL 692
++ L+++AT P+++ +A G+ + A N I Q V + E+ L
Sbjct: 179 KRILLFSATXPREILNLAKKY--------XGDYSFIKAKINANIEQSYVEVNENERFEAL 230
Query: 693 QQILRAQERGSRVIIFCSTKRLCDQLA---RSIGRNFGAIAIHGDKSQGERDWVLNQFRS 749
++L+ +E ++FC TKR +LA R IG F A AIHGD SQ +R+ V+ F+
Sbjct: 231 CRLLKNKEFYG--LVFCKTKRDTKELASXLRDIG--FKAGAIHGDLSQSQREKVIRLFKQ 286
Query: 750 GKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
K IL+ATDV +RG+D+ D+ VINY P E Y HRI
Sbjct: 287 KKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRI 326
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 209/400 (52%), Gaps = 12/400 (3%)
Query: 439 PTFMGSPGVTDLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIV 498
P M GV + + E+ +++ + + +++ GF P+ IQ + ++G D++
Sbjct: 22 PDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVI 81
Query: 499 AIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558
A A++G+GKT + I +L+Q+ + + LVLAPTRELA QIQ G
Sbjct: 82 AQAQSGTGKTATFAIS---ILQQIELDLK-ATQALVLAPTRELAQQIQKVVMALGDYMGA 137
Query: 559 SCTCLYGGAPKGPQLRELDQGA-DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617
SC GG ++++L A I+V TPGR+ D+L + + + + VLDEAD ML
Sbjct: 138 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 197
Query: 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAIT 677
GF+ QI I ++ + Q ++ +AT P DV ++ + +P+++ + +EL
Sbjct: 198 RGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK-EELTLEGIRQ 256
Query: 678 QHVEVVPQMEKERRLQQILRAQERGS--RVIIFCSTKRLCDQLARSI-GRNFGAIAIHGD 734
++ V +E +L + E + + +IF +T+R D L + R+F A+HGD
Sbjct: 257 FYINV---EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGD 313
Query: 735 KSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXX 794
Q ERD ++ +FRSG S +L+ TD+ ARG+D++ + +VINYD P E+Y+HRI
Sbjct: 314 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 373
Query: 795 XXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDM 834
VA +E+D + D+ + + +P V D+
Sbjct: 374 FGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 207/393 (52%), Gaps = 12/393 (3%)
Query: 446 GVTDLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGS 505
GV + + E+ +++ + + +++ GF P+ IQ + ++G D++A A++G+
Sbjct: 3 GVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGT 62
Query: 506 GKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
GKT + I +L+Q+ + + LVLAPTRELA QIQ G SC G
Sbjct: 63 GKTATFAIS---ILQQIELDLK-ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 118
Query: 566 GAPKGPQLRELDQGA-DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQI 624
G ++++L A I+V TPGR+ D+L + + + + VLDEAD ML GF+ QI
Sbjct: 119 GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 178
Query: 625 RKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP 684
I ++ + Q ++ +AT P DV ++ + +P+++ + +EL ++ V
Sbjct: 179 YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK-EELTLEGIRQFYINV-- 235
Query: 685 QMEKERRLQQILRAQER--GSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERD 741
+E +L + E ++ +IF +T+R D L + R+F A+HGD Q ERD
Sbjct: 236 -EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERD 294
Query: 742 WVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVA 801
++ +FRSG S +L+ TD+ ARG+D++ + +VINYD P E+Y+HRI VA
Sbjct: 295 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 354
Query: 802 HTFFSEQDSKYAADLVKVLEGANQHVPPEVRDM 834
+E+D + D+ + + +P V D+
Sbjct: 355 INMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 387
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 203/399 (50%), Gaps = 21/399 (5%)
Query: 444 SPGVTDLSPAE--------VYR-QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG 494
S G+TD+ ++ VY+ E+ L R + GF P+ IQ + ++G
Sbjct: 2 SEGITDIEESQIQTNYDKVVYKFDDMELDENLLR--GVFGYGFEEPSAIQQRAIMPIIEG 59
Query: 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554
D++A A++G+GKT + I A Q + P L+LAPTRELA QIQ
Sbjct: 60 HDVLAQAQSGTGKTGTFSIAAL----QRIDTSVKAPQALMLAPTRELALQIQKVVMALAF 115
Query: 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614
+ GG L + A IVV TPGR+ D ++ ++ ++ + +LDEAD
Sbjct: 116 HMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 174
Query: 615 MLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANK 674
ML GF+ QI +I +PP Q ++ +AT P DV ++ + + NPV++ + DEL +
Sbjct: 175 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK-DELTL-E 232
Query: 675 AITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN--FGAIAIH 732
I Q V + E + L ++ +IFC+T+R ++L + RN F AI+
Sbjct: 233 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKL-RNDKFTVSAIY 291
Query: 733 GDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXX 792
D Q ERD ++ +FRSG S IL++TD+ ARG+D++ + +VINYD P E+Y+HRI
Sbjct: 292 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 351
Query: 793 XXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEV 831
VA F + +D +L K + +P ++
Sbjct: 352 GRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 390
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 184 bits (468), Expect = 2e-46, Method: Composition-based stats.
Identities = 110/319 (34%), Positives = 170/319 (53%), Gaps = 22/319 (6%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++ GF + T +Q++T P+ LQG+++V AKTGSGKT Y IP L G
Sbjct: 8 AIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------GM 57
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
LV+ PTREL Q+ GR +YGG P Q+ + + ADIVVATPGRL
Sbjct: 58 KSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRL 116
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D+ ID ++++DEAD M +MGF I+ I+ + + T +++AT P+++RK
Sbjct: 117 LDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRK 176
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
+ D + N ++ E A +H V + + ++Q + +++G VI+F
Sbjct: 177 VVKDFITNYEEI------EACIGLANVEHKFVHVKDDWRSKVQALRENKDKG--VIVFVR 228
Query: 711 TKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770
T+ +L R AI + GD Q R+ ++ FR G+ +L+ TDVA+RGLDI +
Sbjct: 229 TRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLV 285
Query: 771 RVVINYDFPNGVEDYVHRI 789
VIN+D P + Y+HRI
Sbjct: 286 EKVINFDAPQDLRTYIHRI 304
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 198/399 (49%), Gaps = 21/399 (5%)
Query: 444 SPGVTDLSPAE--------VYR-QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG 494
S G+TD+ ++ VY+ E+ L R + GF P+ IQ + ++G
Sbjct: 1 SEGITDIEESQIQTNYDKVVYKFDDXELDENLLR--GVFGYGFEEPSAIQQRAIXPIIEG 58
Query: 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554
D++A A++G+GKT + I A Q + P L LAPTRELA QIQ
Sbjct: 59 HDVLAQAQSGTGKTGTFSIAAL----QRIDTSVKAPQALXLAPTRELALQIQKVVXALAF 114
Query: 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614
+ GG L + A IVV TPGR+ D ++ ++ ++ +LDEAD
Sbjct: 115 HXDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADE 173
Query: 615 MLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANK 674
L GF+ QI +I +PP Q ++ +AT P DV ++ + NPV++ + DEL +
Sbjct: 174 XLSSGFKEQIYQIFTLLPPTTQVVLLSATXPNDVLEVTTKFXRNPVRILVKK-DELTL-E 231
Query: 675 AITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN--FGAIAIH 732
I Q V + E + L ++ +IFC+T+R ++L + RN F AI+
Sbjct: 232 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKL-RNDKFTVSAIY 290
Query: 733 GDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXX 792
D Q ERD + +FRSG S IL++TD+ ARG+D++ + +VINYD P E+Y+HRI
Sbjct: 291 SDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 350
Query: 793 XXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEV 831
VA F + +D +L K + +P ++
Sbjct: 351 GRFGRKGVAINFVTNEDVGAXRELEKFYSTQIEELPSDI 389
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 179 bits (455), Expect = 6e-45, Method: Composition-based stats.
Identities = 100/202 (49%), Positives = 130/202 (64%), Gaps = 9/202 (4%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNG---- 529
A + PTPIQ P L+ RDI+A A+TGSGKT +LIP L+ Q N R
Sbjct: 41 ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100
Query: 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589
P L+LAPTRELA QI E+ KF ++ L +YGGA Q+RE+ G ++VATPGR
Sbjct: 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGR 160
Query: 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE--MPP--HRQTLMYTATWP 645
L D +E KI +VLDEADRMLDMGFEPQIRKI+ E MP +RQTLM++AT+P
Sbjct: 161 LVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220
Query: 646 KDVRKIASDLLVNPVQVNIGNV 667
K+++K+A+D L N + + +G V
Sbjct: 221 KEIQKLAADFLYNYIFMTVGRV 242
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 163 bits (412), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 186/363 (51%), Gaps = 13/363 (3%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG-PTVL 533
GF P+ +Q + P A+ G D++ AK+G GKT +++ L+QL P G +VL
Sbjct: 25 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT---LQQL--EPVTGQVSVL 79
Query: 534 VLAPTRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGA-DIVVATPGRLN 591
V+ TRELA QI E +F + + +GG L + IVV TPGR+
Sbjct: 80 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRIL 139
Query: 592 DILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
+ K ++ + +LDEAD+ML+ + +++I P +Q +M++AT K++R
Sbjct: 140 ALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRP 199
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
+ + +P+++ + + +L + + Q+ + EK R+L +L E ++V+IF
Sbjct: 200 VCRKFMQDPMEIFVDDETKLTLH-GLQQYYVKLKDNEKNRKLFDLLDVLE-FNQVVIFVK 257
Query: 711 TKRLCDQLARS-IGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
+ + C LA+ + +NF AIAIH Q ER QF+ + ILVAT++ RG+DI+
Sbjct: 258 SVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 317
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFS-EQDSKYAADLVKVLEGANQHVP 828
+ + NYD P + Y+HR+ +A TF S E D+K D+ E +P
Sbjct: 318 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELP 377
Query: 829 PEV 831
E+
Sbjct: 378 DEI 380
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 185/363 (50%), Gaps = 13/363 (3%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG-PTVL 533
GF P+ +Q + P A+ G D++ AK+G GKT +++ L+QL P G +VL
Sbjct: 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT---LQQL--EPVTGQVSVL 80
Query: 534 VLAPTRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGA-DIVVATPGRLN 591
V+ TRELA QI E +F + + +GG L + IVV TPGR+
Sbjct: 81 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRIL 140
Query: 592 DILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
+ K ++ + +LDE D+ML+ + +++I P +Q +M++AT K++R
Sbjct: 141 ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRP 200
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
+ + +P+++ + + +L + + Q+ + EK R+L +L E ++V+IF
Sbjct: 201 VCRKFMQDPMEIFVDDETKLTLH-GLQQYYVKLKDNEKNRKLFDLLDVLE-FNQVVIFVK 258
Query: 711 TKRLCDQLARS-IGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
+ + C LA+ + +NF AIAIH Q ER QF+ + ILVAT++ RG+DI+
Sbjct: 259 SVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFS-EQDSKYAADLVKVLEGANQHVP 828
+ + NYD P + Y+HR+ +A TF S E D+K D+ E +P
Sbjct: 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELP 378
Query: 829 PEV 831
E+
Sbjct: 379 DEI 381
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 185/363 (50%), Gaps = 13/363 (3%)
Query: 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG-PTVL 533
GF P+ +Q + P A+ G D++ AK+G GKT +++ L+QL P G +VL
Sbjct: 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT---LQQL--EPVTGQVSVL 80
Query: 534 VLAPTRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGA-DIVVATPGRLN 591
V+ TRELA QI E +F + + +GG L + IVV TPGR+
Sbjct: 81 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRIL 140
Query: 592 DILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
+ K ++ + +LDE D+ML+ + +++I P +Q +M++AT K++R
Sbjct: 141 ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRP 200
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
+ + +P+++ + + +L + + Q+ + EK R+L +L E ++V+IF
Sbjct: 201 VCRKFMQDPMEIFVDDETKLTLH-GLQQYYVKLKDNEKNRKLFDLLDVLE-FNQVVIFVK 258
Query: 711 TKRLCDQLARS-IGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769
+ + C LA+ + +NF AIAIH Q ER QF+ + ILVAT++ RG+DI+
Sbjct: 259 SVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318
Query: 770 IRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFS-EQDSKYAADLVKVLEGANQHVP 828
+ + NYD P + Y+HR+ +A TF S E D+K D+ E +P
Sbjct: 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELP 378
Query: 829 PEV 831
E+
Sbjct: 379 DEI 381
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 116/194 (59%), Gaps = 3/194 (1%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++H G ++PTPIQA P+AL+G+D++ A+TG+GKTL + +P L R P
Sbjct: 15 ALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRK-P 73
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
LVL PTRELA Q+ E + L +YGG G Q L +GAD VVATPGR
Sbjct: 74 RALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRA 131
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D L +D +V + VLDEAD ML MGFE ++ +++ PP RQTL+++AT P ++
Sbjct: 132 LDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKR 191
Query: 651 IASDLLVNPVQVNI 664
+A + NPV +N+
Sbjct: 192 LAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 156 bits (394), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 116/194 (59%), Gaps = 3/194 (1%)
Query: 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP 530
++H G ++PTPI+A P+AL+G+D++ A+TG+GKTL + +P L R P
Sbjct: 15 ALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRK-P 73
Query: 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL 590
LVL PTRELA Q+ E + L +YGG G Q L +GAD VVATPGR
Sbjct: 74 RALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRA 131
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
D L +D +V + VLDEAD ML MGFE ++ +++ PP RQTL+++AT P ++
Sbjct: 132 LDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKR 191
Query: 651 IASDLLVNPVQVNI 664
+A + NPV +N+
Sbjct: 192 LAERYMKNPVLINV 205
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 179/339 (52%), Gaps = 26/339 (7%)
Query: 477 FSSPTPIQAQTWP--IALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534
F TP+Q +T ++ + D++A AKTG+GKT +LIP F L + + ++
Sbjct: 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 100
Query: 535 LAPTRELATQIQDEANKFGRSS----RLSCTCLYGGAPKGPQLRELDQGA-DIVVATPGR 589
+APTR+LA QI+ E K + + +C L GG + ++++ +IV+ATPGR
Sbjct: 101 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGR 160
Query: 590 LNDILEMKKIDFGQ-VSLLVLDEADRMLDMGFEPQ---IRKIVNEM----PPHRQTLMYT 641
L D+LE F + V VLDEADR+L++GF I I+NE + +TL+++
Sbjct: 161 LIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFS 220
Query: 642 ATWPKDVRKIASDLLVNPVQVNIGNVD--ELAANKAITQHVEVVPQMEKE-----RRLQQ 694
AT V+K+A++++ + + VD E A++ I Q V + + +++
Sbjct: 221 ATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKK 280
Query: 695 ILRAQERGSRVIIFCSTKR----LCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSG 750
++ ++ + IIF T + LC L ++ + HG +Q +R ++ +F+
Sbjct: 281 QIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 340
Query: 751 KSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
+S ILV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 341 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 179/339 (52%), Gaps = 26/339 (7%)
Query: 477 FSSPTPIQAQTWP--IALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534
F TP+Q +T ++ + D++A AKTG+GKT +LIP F L + + ++
Sbjct: 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 151
Query: 535 LAPTRELATQIQDEANKFGRSS----RLSCTCLYGGAPKGPQLRELDQGA-DIVVATPGR 589
+APTR+LA QI+ E K + + +C L GG + ++++ +IV+ATPGR
Sbjct: 152 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGR 211
Query: 590 LNDILEMKKIDFGQ-VSLLVLDEADRMLDMGFEPQIRKI---VNEM----PPHRQTLMYT 641
L D+LE F + V VLDEADR+L++GF + I +NE + +TL+++
Sbjct: 212 LIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFS 271
Query: 642 ATWPKDVRKIASDLLVNPVQVNIGNVD--ELAANKAITQHVEVVPQMEKE-----RRLQQ 694
AT V+K+A++++ + + VD E A++ I Q V + + +++
Sbjct: 272 ATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKK 331
Query: 695 ILRAQERGSRVIIFCSTKR----LCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSG 750
++ ++ + IIF T + LC L ++ + HG +Q +R ++ +F+
Sbjct: 332 QIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 391
Query: 751 KSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
+S ILV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 392 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 430
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 179/339 (52%), Gaps = 26/339 (7%)
Query: 477 FSSPTPIQAQTWP--IALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534
F TP+Q +T ++ + D++A AKTG+GKT +LIP F L + + ++
Sbjct: 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 100
Query: 535 LAPTRELATQIQDEANKFGRSS----RLSCTCLYGGAPKGPQLRELDQGA-DIVVATPGR 589
+APTR+LA QI+ E K + + +C L GG + ++++ +IV+ATPGR
Sbjct: 101 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGR 160
Query: 590 LNDILEMKKIDFGQ-VSLLVLDEADRMLDMGFEPQIRKI---VNEM----PPHRQTLMYT 641
L D+LE F + V VLDEADR+L++GF + I +NE + +TL+++
Sbjct: 161 LIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFS 220
Query: 642 ATWPKDVRKIASDLLVNPVQVNIGNVD--ELAANKAITQHVEVVPQMEKE-----RRLQQ 694
AT V+K+A++++ + + VD E A++ I Q V + + +++
Sbjct: 221 ATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKK 280
Query: 695 ILRAQERGSRVIIFCSTKR----LCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSG 750
++ ++ + IIF T + LC L ++ + HG +Q +R ++ +F+
Sbjct: 281 QIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD 340
Query: 751 KSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
+S ILV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 341 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 183/356 (51%), Gaps = 34/356 (9%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529
+++ F P+ IQ + P+ L R+++A +++G+GKT AF L NP +
Sbjct: 20 IYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKT-----AAFSLTMLTRVNPEDA 74
Query: 530 -PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLY-GGAPKGPQLRELDQGADIVVATP 587
P + LAP+RELA Q + + G+ ++++ + K Q+ A ++V TP
Sbjct: 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI-----NAQVIVGTP 129
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATWPK 646
G + D++ K + ++ + VLDEAD MLD G Q ++ +P Q ++++AT+
Sbjct: 130 GTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD 189
Query: 647 DVRKIASDLLVNP----VQVNIGNVDELAANKAITQ-HVEVVPQMEKERRLQQILRAQER 701
VR+ A ++ N +Q N NVD AI Q +++ + +K L ++
Sbjct: 190 AVRQYAKKIVPNANTLELQTNEVNVD------AIKQLYMDCKNEADKFDVLTELYGVMTI 243
Query: 702 GSRVIIFCSTKRLCDQLARSIGRNFGAIAI-HGDKSQGERDWVLNQFRSGKSPILVATDV 760
GS IIF +TK+ + L + ++I HGD ERD +++ FR G+S +L+ T+V
Sbjct: 244 GSS-IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV 302
Query: 761 AARGLDIKDIRVVINYDFP---NGVED---YVHRIXXXXXXXXXXVAHTFFSEQDS 810
ARG+DI + +V+NYD P NG D Y+HRI VA +F +++S
Sbjct: 303 LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 183/356 (51%), Gaps = 34/356 (9%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529
+++ F P+ IQ + P+ L R+++A +++G+GKT AF L NP +
Sbjct: 20 IYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKT-----AAFSLTMLTRVNPEDA 74
Query: 530 -PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLY-GGAPKGPQLRELDQGADIVVATP 587
P + LAP+RELA Q + + G+ ++++ + K Q+ A ++V TP
Sbjct: 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI-----NAQVIVGTP 129
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATWPK 646
G + D++ K + ++ + VLDEAD MLD G Q ++ +P Q ++++AT+
Sbjct: 130 GTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD 189
Query: 647 DVRKIASDLLVNP----VQVNIGNVDELAANKAITQ-HVEVVPQMEKERRLQQILRAQER 701
VR+ A ++ N +Q N NVD AI Q +++ + +K L ++
Sbjct: 190 AVRQYAKKIVPNANTLELQTNEVNVD------AIKQLYMDCKNEADKFDVLTELYGLMTI 243
Query: 702 GSRVIIFCSTKRLCDQLARSIGRNFGAIAI-HGDKSQGERDWVLNQFRSGKSPILVATDV 760
GS IIF +TK+ + L + ++I HGD ERD +++ FR G+S +L+ T+V
Sbjct: 244 GSS-IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV 302
Query: 761 AARGLDIKDIRVVINYDFP---NGVED---YVHRIXXXXXXXXXXVAHTFFSEQDS 810
ARG+DI + +V+NYD P NG D Y+HRI VA +F +++S
Sbjct: 303 LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 135 bits (341), Expect = 1e-31, Method: Composition-based stats.
Identities = 73/185 (39%), Positives = 117/185 (63%), Gaps = 1/185 (0%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
+ ++ GF++ T IQ ++ L+GRD++A AKTGSGKTL +LIPA L+ +L PRN
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRN 125
Query: 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588
G VL+L+PTRELA Q + + + GG+ + + ++L G +I+VATPG
Sbjct: 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPG 185
Query: 589 RLNDILE-MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647
RL D ++ + + LV+DEADR+LD+GFE ++++I+ +P RQT++++AT +
Sbjct: 186 RLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRK 245
Query: 648 VRKIA 652
V +A
Sbjct: 246 VEDLA 250
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 174/339 (51%), Gaps = 22/339 (6%)
Query: 483 IQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRE 540
IQ + P+ L R+++ +++G+GKT + + +L R + P+ P + LAP+RE
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALT--MLSRVDASVPK--PQAICLAPSRE 200
Query: 541 LATQIQDEANKFGRSSRLSCTC-LYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI 599
LA QI D + G+ + + + PKG ++ A IV+ TPG + D+++ +++
Sbjct: 201 LARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKI-----DAQIVIGTPGTVMDLMKRRQL 255
Query: 600 DFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVN 658
D + + VLDEAD MLD G Q +I + +P + Q ++++AT+ + V K A N
Sbjct: 256 DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPN 315
Query: 659 PVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQL 718
++ + +EL+ +++ + K L ++ G IIFC K +++
Sbjct: 316 ANEIRL-KTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQS-IIFCKKKDTAEEI 373
Query: 719 ARSIGRNFGAIA-IHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYD 777
AR + + +A + G+ +RD +++ FR G S +LV T+V ARG+D+ + +V+NYD
Sbjct: 374 ARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433
Query: 778 FP---NGVED---YVHRIXXXXXXXXXXVAHTFFSEQDS 810
P G D Y+HRI V+ F ++ S
Sbjct: 434 MPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKS 472
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 132 bits (332), Expect = 1e-30, Method: Composition-based stats.
Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 5/192 (2%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535
G++ PT IQ + P+ALQGRDI+ +A+TGSGKT + +P +L L P+ LVL
Sbjct: 62 GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP---ILNALLETPQR-LFALVL 117
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
PTRELA QI ++ G S + + GG Q L + I++ATPGRL D LE
Sbjct: 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE 177
Query: 596 -MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASD 654
K + + LV+DEADR+L+M FE ++ KI+ +P R+T +++AT K V+K+
Sbjct: 178 NTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA 237
Query: 655 LLVNPVQVNIGN 666
L NPV+ + +
Sbjct: 238 ALKNPVKCAVSS 249
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 128 bits (322), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/189 (38%), Positives = 108/189 (57%), Gaps = 2/189 (1%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPT 531
+ A + T IQ QT +ALQG+D++ AKTGSGKTL +L+P L +L +G
Sbjct: 40 LQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLG 99
Query: 532 VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR-L 590
VL+++PTRELA Q + K G++ S + GG + ++ +I+V TPGR L
Sbjct: 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINN-INILVCTPGRLL 158
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
+ E + +LVLDEADR+LDMGF + ++ +P RQTL+++AT K V+
Sbjct: 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKD 218
Query: 651 IASDLLVNP 659
+A L NP
Sbjct: 219 LARLSLKNP 227
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 127 bits (320), Expect = 3e-29, Method: Composition-based stats.
Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Query: 671 AANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAI 729
+ ++ ITQ V V + +K L +L A + S ++F TK+ D L + +
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACT 74
Query: 730 AIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
+IHGD+SQ +R+ L+QFRSGKSPILVAT VAARGLDI +++ VIN+D P+ +E+YVHRI
Sbjct: 75 SIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 134
Query: 790 XXXXXXXXXXVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMA 835
+A +FF+E++ DL+ +L A Q VP + +MA
Sbjct: 135 GRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 180
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 169/333 (50%), Gaps = 27/333 (8%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529
+++ GF+ P+ IQ P+ L ++++A +++G+GKT AF+L P N
Sbjct: 77 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKT-----AAFVLAMLSQVEPANK 131
Query: 530 -PTVLVLAPTRELATQ---IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
P L L+PT ELA Q + ++ KF +L+ +G ++ E IV+
Sbjct: 132 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE-----QIVIG 186
Query: 586 TPGRLNDIL-EMKKIDFGQVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTAT 643
TPG + D ++K ID ++ + VLDEAD M+ G + Q +I +P + Q L+++AT
Sbjct: 187 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 246
Query: 644 WPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS 703
+ V K A ++ +P + + +E I Q+ + +++ + L +
Sbjct: 247 FEDSVWKFAQKVVPDPNVIKLKREEETL--DTIKQYYVLCSSRDEKFQALCNLYGAITIA 304
Query: 704 RVIIFCSTKRLCDQLARSIGRNFGAIAI-HGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
+ +IFC T++ LA + + +A+ G+ +R V+ +FR GK +LV T+V A
Sbjct: 305 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 364
Query: 763 RGLDIKDIRVVINYDFPNGV------EDYVHRI 789
RG+D++ + VVIN+D P E Y+HRI
Sbjct: 365 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 397
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 169/333 (50%), Gaps = 27/333 (8%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529
+++ GF+ P+ IQ P+ L ++++A +++G+GKT AF+L P N
Sbjct: 40 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKT-----AAFVLAMLSQVEPANK 94
Query: 530 -PTVLVLAPTRELATQ---IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
P L L+PT ELA Q + ++ KF +L+ +G ++ E IV+
Sbjct: 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE-----QIVIG 149
Query: 586 TPGRLNDIL-EMKKIDFGQVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTAT 643
TPG + D ++K ID ++ + VLDEAD M+ G + Q +I +P + Q L+++AT
Sbjct: 150 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 209
Query: 644 WPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS 703
+ V K A ++ +P + + +E I Q+ + +++ + L +
Sbjct: 210 FEDSVWKFAQKVVPDPNVIKLKREEETL--DTIKQYYVLCSSRDEKFQALCNLYGAITIA 267
Query: 704 RVIIFCSTKRLCDQLARSIGRNFGAIAI-HGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
+ +IFC T++ LA + + +A+ G+ +R V+ +FR GK +LV T+V A
Sbjct: 268 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327
Query: 763 RGLDIKDIRVVINYDFPNGV------EDYVHRI 789
RG+D++ + VVIN+D P E Y+HRI
Sbjct: 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 360
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 169/333 (50%), Gaps = 27/333 (8%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529
+++ GF+ P+ IQ P+ L ++++A +++G+GKT AF+L P N
Sbjct: 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKT-----AAFVLAMLSQVEPANK 161
Query: 530 -PTVLVLAPTRELATQ---IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
P L L+PT ELA Q + ++ KF +L+ +G ++ E IV+
Sbjct: 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE-----QIVIG 216
Query: 586 TPGRLNDIL-EMKKIDFGQVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTAT 643
TPG + D ++K ID ++ + VLDEAD M+ G + Q +I +P + Q L+++AT
Sbjct: 217 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 276
Query: 644 WPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS 703
+ V K A ++ +P + + +E I Q+ + +++ + L +
Sbjct: 277 FEDSVWKFAQKVVPDPNVIKLKREEETL--DTIKQYYVLCSSRDEKFQALCNLYGAITIA 334
Query: 704 RVIIFCSTKRLCDQLARSIGRNFGAIAI-HGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
+ +IFC T++ LA + + +A+ G+ +R V+ +FR GK +LV T+V A
Sbjct: 335 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 394
Query: 763 RGLDIKDIRVVINYDFPNGV------EDYVHRI 789
RG+D++ + VVIN+D P E Y+HRI
Sbjct: 395 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 427
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 169/333 (50%), Gaps = 27/333 (8%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529
+++ GF+ P+ IQ P+ L ++++A +++G+GKT AF+L P N
Sbjct: 56 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKT-----AAFVLAMLSQVEPANK 110
Query: 530 -PTVLVLAPTRELATQ---IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
P L L+PT ELA Q + ++ KF +L+ +G ++ E IV+
Sbjct: 111 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE-----QIVIG 165
Query: 586 TPGRLNDIL-EMKKIDFGQVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTAT 643
TPG + D ++K ID ++ + VLDEAD M+ G + Q +I +P + Q L+++AT
Sbjct: 166 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 225
Query: 644 WPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS 703
+ V K A ++ +P + + +E I Q+ + +++ + L +
Sbjct: 226 FEDSVWKFAQKVVPDPNVIKLKREEETL--DTIKQYYVLCSSRDEKFQALCNLYGAITIA 283
Query: 704 RVIIFCSTKRLCDQLARSIGRNFGAIAI-HGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
+ +IFC T++ LA + + +A+ G+ +R V+ +FR GK +LV T+V A
Sbjct: 284 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 343
Query: 763 RGLDIKDIRVVINYDFPNGV------EDYVHRI 789
RG+D++ + VVIN+D P E Y+HRI
Sbjct: 344 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 376
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 121 bits (304), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/191 (36%), Positives = 111/191 (58%), Gaps = 9/191 (4%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535
G+ P+PIQ ++ PIAL GRDI+A AK G+GK+ YLIP LL +L + ++ +V+
Sbjct: 22 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP---LLERL-DLKKDNIQAMVI 77
Query: 536 APTRELATQIQD---EANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLND 592
PTRELA Q+ + +K +++ T GG + LD +V+ATPGR+ D
Sbjct: 78 VPTRELALQVSQICIQVSKHMGGAKVMATT--GGTNLRDDIMRLDDTVHVVIATPGRILD 135
Query: 593 ILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652
+++ V ++VLDEAD++L F + I+ +P +RQ L+Y+AT+P V+K
Sbjct: 136 LIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 195
Query: 653 SDLLVNPVQVN 663
+ L P ++N
Sbjct: 196 NSHLEKPYEIN 206
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 16/230 (6%)
Query: 444 SPGVTDLSPAE--------VYR-QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG 494
S G+TD+ ++ VY+ E+ L R + GF P+ IQ + ++G
Sbjct: 1 SEGITDIEESQIQTNYQKVVYKFDDMELDEQLLR--GVFGYGFEEPSAIQQRAIMPIIEG 58
Query: 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554
D++A A++G+GKT + I A Q + P L+LAPTRELA QIQ
Sbjct: 59 HDVLAQAQSGTGKTGTFSIAAL----QRIDTSVKAPQALMLAPTRELALQIQKVVMALAF 114
Query: 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614
+ GG L + A IVV TPGR+ D ++ ++ ++ + +LDEAD
Sbjct: 115 HMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173
Query: 615 MLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNI 664
ML GF+ QI +I +PP Q ++ +AT P DV ++ + + NPV++ +
Sbjct: 174 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 223
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 103/195 (52%), Gaps = 6/195 (3%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535
GF P+ IQ + ++G D++A A++G+GKT + I A Q + P L+L
Sbjct: 33 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL----QRIDTSVKAPQALML 88
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE 595
APTRELA QIQ + GG L + A IVV TPGR+ D ++
Sbjct: 89 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQ 147
Query: 596 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655
++ ++ + +LDEAD ML GF+ QI +I +PP Q ++ +AT P DV ++ +
Sbjct: 148 RRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKF 207
Query: 656 LVNPVQVNIGNVDEL 670
+ NPV++ + DEL
Sbjct: 208 MRNPVRILVKK-DEL 221
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 109 bits (272), Expect = 1e-23, Method: Composition-based stats.
Identities = 69/200 (34%), Positives = 103/200 (51%), Gaps = 8/200 (4%)
Query: 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528
+ ++ + F PT IQ + P AL+G V ++TG+GKT YL+P + + R
Sbjct: 16 IEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLP----IXEKIKPERA 71
Query: 529 GPTVLVLAPTRELATQIQDEA---NKFGRSSR-LSCTCLYGGAPKGPQLRELDQGADIVV 584
++ APTRELATQI E KF R + CL GG K L +L+ IV+
Sbjct: 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHIVI 131
Query: 585 ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644
TPGR+ND + + +D +LV+DEAD LD GF + +I P Q L+++AT
Sbjct: 132 GTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDLQXLVFSATI 191
Query: 645 PKDVRKIASDLLVNPVQVNI 664
P+ ++ NP V++
Sbjct: 192 PEKLKPFLKKYXENPTFVHV 211
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 5/218 (2%)
Query: 446 GVTDLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGS 505
GV + + E+ +++ + +++ GF P+ IQ + ++G D++A A++G+
Sbjct: 19 GVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGT 78
Query: 506 GKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
GKT + I +L+QL + LVLAPTRELA QIQ G +C G
Sbjct: 79 GKTATFAIS---ILQQLEIEFKE-TQALVLAPTRELAQQIQKVILALGDYMGATCHACIG 134
Query: 566 GAPKGPQLRELDQGA-DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQI 624
G ++++L A IVV TPGR+ D+L + + + + VLDEAD ML GF+ QI
Sbjct: 135 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 194
Query: 625 RKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQV 662
+I ++ Q ++ +AT P DV ++ + +P+++
Sbjct: 195 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 114/215 (53%), Gaps = 12/215 (5%)
Query: 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI 517
Q +++++ L + ++ AGF PTPIQ Q P+ L GR+++A A TGSGKTL + IP
Sbjct: 32 QEYKINSRL--LQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIP--- 86
Query: 518 LLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR-EL 576
+L QL G L+++PTRELA+QI E K + ++ A + +
Sbjct: 87 ILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKS 146
Query: 577 DQGADIVVATPGRLNDILEMK--KIDFGQVSLLVLDEADRMLD---MGFEPQIRKIVNEM 631
+ DI+V TP RL +L+ ID V LV+DE+D++ + GF Q+ I
Sbjct: 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLAC 206
Query: 632 PPHR-QTLMYTATWPKDVRKIASDLLVNPVQVNIG 665
H+ + M++AT+ DV + L N + V+IG
Sbjct: 207 TSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 105 bits (262), Expect = 1e-22, Method: Composition-based stats.
Identities = 63/204 (30%), Positives = 107/204 (52%), Gaps = 11/204 (5%)
Query: 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF--ILLRQLHN 524
P + + +AGF P+P+Q + P+ G D++ AK+G+GKT + A ++L L
Sbjct: 34 PVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST 93
Query: 525 NPRNGPTVLVLAPTRELATQIQDEANKFG-RSSRLSCTCLYGGAPKGPQLRELDQGADIV 583
+L+LAPTRE+A QI G + L C GG P L + I
Sbjct: 94 Q------ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIA 146
Query: 584 VATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG-FEPQIRKIVNEMPPHRQTLMYTA 642
V +PGR+ ++E+ ++ G + L +LDEAD++L+ G F+ QI I + +P +Q L +A
Sbjct: 147 VGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSA 206
Query: 643 TWPKDVRKIASDLLVNPVQVNIGN 666
T+P+ + + + +P V + +
Sbjct: 207 TYPEFLANALTKYMRDPTFVRLNS 230
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 112/218 (51%), Gaps = 5/218 (2%)
Query: 446 GVTDLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGS 505
GV + + E+ +++ + + +++ GF P+ IQ + + G D++A A++G+
Sbjct: 4 GVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGT 63
Query: 506 GKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG 565
G T + I +L+Q+ + LVLAPTRELA QIQ G SC G
Sbjct: 64 GXTATFAIS---ILQQIELD-LXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIG 119
Query: 566 GAPKGPQLRELDQGA-DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQI 624
G +++ L A I+V TPGR+ D+L + + + + VLDEAD ML GF QI
Sbjct: 120 GTNVRAEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQI 179
Query: 625 RKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQV 662
I + + Q ++ +AT P DV ++ + +P+++
Sbjct: 180 YDIFQXLNSNTQVVLLSATMPSDVLEVTXXFMRDPIRI 217
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/171 (38%), Positives = 89/171 (52%), Gaps = 6/171 (3%)
Query: 671 AANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAI 729
AA+ + Q VE V + K L + L Q+ V+IF K D + + + A+
Sbjct: 25 AASLDVIQEVEYVKEEAKMVYLLECL--QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 82
Query: 730 AIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
AIHG K Q ER + FR GK +LVATDVA++GLD I+ VINYD P +E+YVHRI
Sbjct: 83 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRI 142
Query: 790 XXXXXXXXXXVAHTFFSEQ-DSKYAADLVKVLEGANQHVPPEVRDMALRCG 839
+A TF ++ D DL +L A Q VPP ++ L CG
Sbjct: 143 GRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ--VLHCG 191
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 9/191 (4%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP-TVLV 534
GF P+ +Q + P A+ G D++ AK+G GKT +++ L+QL P G +VLV
Sbjct: 33 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT---LQQLE--PVTGQVSVLV 87
Query: 535 LAPTRELATQIQDEANKFGR-SSRLSCTCLYGGAPKGPQLRELDQGA-DIVVATPGRLND 592
+ TRELA QI E +F + + +GG L + IVV TPGR+
Sbjct: 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA 147
Query: 593 ILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651
+ K ++ + +LDE D+ML+ + +++I P +Q +M++AT K++R +
Sbjct: 148 LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 207
Query: 652 ASDLLVNPVQV 662
+ +P+++
Sbjct: 208 CRKFMQDPMEI 218
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 89.7 bits (221), Expect = 9e-18, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 703 SRVIIFCSTKRLCDQLARSIGRN--FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDV 760
++ +IFC+T+R ++L + RN F AI+ D Q ERD ++ +FRSG S IL++TD+
Sbjct: 31 TQAVIFCNTRRKVEELTTKL-RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 89
Query: 761 AARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFFSEQDSKYAADLVKVL 820
ARG+D++ + +VINYD P E+Y+HRI VA F + +D +L K
Sbjct: 90 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 149
Query: 821 EGANQHVPPEV 831
+ +P ++
Sbjct: 150 STQIEELPSDI 160
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 15/192 (7%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529
+++ F P+ IQ + P+ L R+++A +++G+GKT AF L NP +
Sbjct: 37 IYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKT-----AAFSLTMLTRVNPEDA 91
Query: 530 -PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLY-GGAPKGPQLRELDQGADIVVATP 587
P + LAP+RELA Q + + G+ ++++ + K Q+ A ++V TP
Sbjct: 92 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI-----NAQVIVGTP 146
Query: 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPK 646
G + D++ K + ++ + VLDEAD MLD G Q ++ +P Q ++++AT+
Sbjct: 147 GTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD 206
Query: 647 DVRKIASDLLVN 658
VR+ A ++ N
Sbjct: 207 AVRQYAKKIVPN 218
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 82.0 bits (201), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 677 TQHVE-VVPQMEKERR---LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAI 731
T+++E V Q+ +E + L+ +L + S IIFC TK +QL + + I
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDS-CIIFCRTKEHVNQLTDELDDLGYPCDKI 65
Query: 732 HGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXX 791
HG Q +R V+N+F+ G+ LVATDVAARG+DI++I +VINYD P E YVHR
Sbjct: 66 HGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGR 125
Query: 792 XXXXXXXXVAHTFFSEQDSKYAADL 816
A +F + + ++ AD+
Sbjct: 126 TGRAGNKGKAISFVTAFEKRFLADI 150
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 687 EKERRLQQILRAQERGSRVIIFCSTKRLCDQLARS-IGRNFGAIAIHGDKSQGERDWVLN 745
EK R+L +L E ++V+IF + + C LA+ + +NF AIAIH Q ER
Sbjct: 17 EKNRKLFDLLDVLEF-NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 75
Query: 746 QFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIXXXXXXXXXXVAHTFF 805
QF+ + ILVAT++ RG+DI+ + + NYD P + Y+HR+ +A TF
Sbjct: 76 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 135
Query: 806 S-EQDSKYAADLVKVLEGANQHVPPEV 831
S E D+K D+ E +P E+
Sbjct: 136 SDENDAKILNDVQDRFEVNISELPDEI 162
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 77.4 bits (189), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 77/133 (57%), Gaps = 5/133 (3%)
Query: 658 NPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQ 717
+P ++N+ ++EL K +TQ+ V + +K L + ++ + ++ IIFC++ + +
Sbjct: 4 DPYEINL--MEELTL-KGVTQYYAYVTERQKVHCLNTLF-SRLQINQSIIFCNSSQRVEL 59
Query: 718 LARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINY 776
LA+ I + + IH Q R+ V + FR+G LV TD+ RG+DI+ + VVIN+
Sbjct: 60 LAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINF 119
Query: 777 DFPNGVEDYVHRI 789
DFP E Y+HRI
Sbjct: 120 DFPKLAETYLHRI 132
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 704 RVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
R ++F TK +++A+ + R A A+HGD SQGER+ VL FR G+ +LVATDVAA
Sbjct: 33 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92
Query: 763 RGLDIKDIRVVINYDFPNGVEDYVH 787
RGLDI + +V++Y P+ E Y H
Sbjct: 93 RGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 18/206 (8%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529
+++ GF+ P+ IQ P+ L ++++A +++G+GKT AF+L P N
Sbjct: 40 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKT-----AAFVLAMLSQVEPANK 94
Query: 530 -PTVLVLAPTRELATQ---IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
P L L+PT ELA Q + ++ KF +L+ +G ++ E IV+
Sbjct: 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE-----QIVIG 149
Query: 586 TPGRLNDIL-EMKKIDFGQVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTAT 643
TPG + D ++K ID ++ + VLDEAD M+ G + Q +I +P + Q L+++AT
Sbjct: 150 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 209
Query: 644 WPKDVRKIASDLLVNPVQVNIGNVDE 669
+ V K A ++ +P + + +E
Sbjct: 210 FEDSVWKFAQKVVPDPNVIKLKREEE 235
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 73.6 bits (179), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 704 RVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
R ++F TK +++A+ + R A A+HGD SQGER+ V+ FR G+ +LVATDVAA
Sbjct: 30 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89
Query: 763 RGLDIKDIRVVINYDFPNGVEDYVH 787
RGLDI + +V++Y P+ E Y H
Sbjct: 90 RGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 102/196 (52%), Gaps = 18/196 (9%)
Query: 472 MHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529
+++ GF+ P+ IQ P+ L ++++A +++G+GKT AF+L P N
Sbjct: 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKT-----AAFVLAMLSQVEPANK 161
Query: 530 -PTVLVLAPTRELATQ---IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVA 585
P L L+PT ELA Q + ++ KF +L+ +G ++ E IV+
Sbjct: 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE-----QIVIG 216
Query: 586 TPGRLNDIL-EMKKIDFGQVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTAT 643
TPG + D ++K ID ++ + VLDEAD M+ G + Q +I +P + Q L+++AT
Sbjct: 217 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 276
Query: 644 WPKDVRKIASDLLVNP 659
+ V K A ++ +P
Sbjct: 277 FEDSVWKFAQKVVPDP 292
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 706 IIFCSTKRLCDQLARSIGRNFGAIAI-HGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
IIF +TK+ + L + ++I HGD ERD +++ FR G+S +L+ T+V ARG
Sbjct: 39 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 98
Query: 765 LDIKDIRVVINYDFP---NGVED---YVHRIXXXXXXXXXXVAHTFFSEQDS 810
+DI + +V+NYD P NG D Y+HRI VA +F +++S
Sbjct: 99 IDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 150
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 144/323 (44%), Gaps = 37/323 (11%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535
G+ P Q + L GRD + + TG GK+L Y IPA +L NG TV+V
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGLTVVV- 71
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGAD-----IVVATPGRL 590
+P L + ++D+ ++ +++ ++ CL + QL E+ G ++ P RL
Sbjct: 72 SP---LISLMKDQVDQL-QANGVAAACLNSTQTREQQL-EVMTGCRTGQIRLLYIAPERL 126
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMG--FEPQIRKI--VNEMPPHRQTLMYTATWPK 646
++ + LL +DEA + G F P+ + + + P + TAT
Sbjct: 127 MLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADD 186
Query: 647 DVRKIASDLL-VNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR--AQERGS 703
R+ LL +N + I + D + MEK + L Q++R ++RG
Sbjct: 187 TTRQDIVRLLGLNDPLIQISSFDRPNIRYML---------MEKFKPLDQLMRYVQEQRGK 237
Query: 704 RVIIFCSTK-RLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
II+C+++ ++ D AR + A A H R V +F+ I+VAT
Sbjct: 238 SGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297
Query: 763 RGLDIKDIRVVINYDFPNGVEDY 785
G++ ++R V+++D P +E Y
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESY 320
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 706 IIFCSTKRLCDQLARSIGRNFGAIAI-HGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
IIF +TK+ + L + ++I HGD ERD +++ FR G+S +L+ T+V ARG
Sbjct: 40 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 99
Query: 765 LDIKDIRVVINYDFP---NGVED---YVHRIXXXXXXXXXXVAHTFFSEQDS 810
+DI + V+NYD P NG D Y+HRI VA +F +++S
Sbjct: 100 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 151
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 706 IIFCSTKRLCDQLARSIGRNFGAIAI-HGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764
IIF +TK+ + L + ++I HGD ERD +++ FR G+S +L+ T+V ARG
Sbjct: 41 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 100
Query: 765 LDIKDIRVVINYDFP---NGVED---YVHRIXXXXXXXXXXVAHTFFSEQDS 810
+DI + V+NYD P NG D Y+HRI VA +F +++S
Sbjct: 101 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 152
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 142/326 (43%), Gaps = 43/326 (13%)
Query: 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535
G+ P Q + L GRD + + TG GK+L Y IPA +L NG TV+V
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLL---------NGLTVVV- 71
Query: 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGAD-----IVVATPGRL 590
+P L + +D+ ++ +++ ++ CL + QL E+ G ++ P RL
Sbjct: 72 SP---LISLXKDQVDQL-QANGVAAACLNSTQTREQQL-EVXTGCRTGQIRLLYIAPERL 126
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMG--FEP------QIRKIVNEMPPHRQTLMYTA 642
++ + LL +DEA + G F P Q+R+ +P T
Sbjct: 127 XLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFXALTATADD 186
Query: 643 TWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR--AQE 700
T +D+ ++ L +N + I + D + EK + L Q+ R ++
Sbjct: 187 TTRQDIVRL---LGLNDPLIQISSFDRPNIRYXLX---------EKFKPLDQLXRYVQEQ 234
Query: 701 RGSRVIIFCSTK-RLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759
RG II+C+++ ++ D AR + A A H R V +F+ I+VAT
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294
Query: 760 VAARGLDIKDIRVVINYDFPNGVEDY 785
G++ ++R V+++D P +E Y
Sbjct: 295 AFGXGINKPNVRFVVHFDIPRNIESY 320
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 674 KAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLA---RSIGRNFGAIA 730
K I Q +E + L L Q +R I+F + +LA R G N
Sbjct: 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGIN--NCY 59
Query: 731 IHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
+ G+ QG+R+ + + G+ +LVATDVAARG+DI D+ V N+D P + Y+HRI
Sbjct: 60 LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRI 118
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 704 RVIIFCSTKRLCDQLARSIGRNFGAIAI-HGDKSQGERDWVLNQFRSGKSPILVATDVAA 762
+ IIFC T+R L + ++ +++ G+ + +R ++ +FR GK +L+ T+V A
Sbjct: 36 QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCA 95
Query: 763 RGLDIKDIRVVINYDFP------NGVEDYVHRI 789
RG+D+K + +V+N+D P E Y+HRI
Sbjct: 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRI 128
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 692 LQQILRAQERGSRVIIFCSTKR----LCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQF 747
+++ ++ ++ + IIF T + LC L ++ + HG +Q +R ++ +F
Sbjct: 23 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 82
Query: 748 RSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
+ +S ILV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 83 KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 124
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 692 LQQILRAQERGSRVIIFCSTKR----LCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQF 747
+++ ++ ++ + IIF T + LC L ++ + HG +Q +R ++ +F
Sbjct: 23 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 82
Query: 748 RSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
+ +S ILV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 83 KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 124
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 692 LQQILRAQERGSRVIIFCSTKR----LCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQF 747
+++ ++ ++ + IIF T + LC L ++ + HG +Q +R ++ +F
Sbjct: 23 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 82
Query: 748 RSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
+ +S ILV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 83 KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 124
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 21/125 (16%)
Query: 673 NKAITQHVEVVPQMEKER--RLQQILRAQ----ERGSRVIIFCSTKRLCDQLARSIGRN- 725
NK I + + P+ E E+ +L+ + E +R IIF T++ L++ I N
Sbjct: 115 NKKILKKLAENPEYENEKLTKLRNTIXEHFTRTEESARGIIFTKTRQSAYALSQWITDNK 174
Query: 726 -FGAIAIHGD-------------KSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771
F + + +Q E+ V+++FR+GK +L+AT VA GLDIK+
Sbjct: 175 KFAEVGVKAHHLIGAGHSSEFKPXTQNEQREVISKFRTGKINLLIATTVAEEGLDIKECN 234
Query: 772 VVINY 776
+VI Y
Sbjct: 235 IVIRY 239
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN--FGAIAI---------HGDK----S 736
++Q R +E +R IIF T++ L++ I N F + + H + +
Sbjct: 391 MEQYTRTEE-SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMT 449
Query: 737 QGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINY 776
Q E+ V+++FR+GK +L+AT VA GLDIK+ +VI Y
Sbjct: 450 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRY 489
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 15/106 (14%)
Query: 684 PQMEKERRLQQILRAQ---ERGSRVIIFC----STKRLCDQLAR---SIGRNFGAIAIHG 733
P+M+K L++I+R Q ++ S++I+F + K++ ++L + R G +
Sbjct: 343 PKMDK---LKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399
Query: 734 DK--SQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYD 777
D+ SQ E+ +L++F G+ +LVAT V GLD+ ++ +V+ Y+
Sbjct: 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYE 445
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 503 TGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL---S 559
TG GKTL ++ A L + G VL+LAPT+ L Q A F R L
Sbjct: 32 TGLGKTLIAMMIAEYRL------TKYGGKVLMLAPTKPLVLQ---HAESFRRLFNLPPEK 82
Query: 560 CTCLYGGAPKGPQLRELDQG-ADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614
L G K P+ R A ++VATP + + L +I VSL+V DEA R
Sbjct: 83 IVALTG--EKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 688 KERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQF 747
K R+L++IL + R ++IIF ++L I + F AI S+ ER+ +L F
Sbjct: 101 KIRKLREILE-RHRKDKIIIFTRH----NELVYRISKVFLIPAITHRTSREEREEILEGF 155
Query: 748 RSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
R+G+ +V++ V G+D+ D V + +Y+ R+
Sbjct: 156 RTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRL 197
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 688 KERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQF 747
K R+L++IL + R ++IIF ++L I + F AI S+ ER+ +L F
Sbjct: 336 KIRKLREILE-RHRKDKIIIFTRH----NELVYRISKVFLIPAITHRTSREEREEILEGF 390
Query: 748 RSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRI 789
R+G+ +V++ V G+D+ D V + +Y+ R+
Sbjct: 391 RTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRL 432
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 703 SRVIIFCSTKRLCDQLARSIGRN----FGAIAIHGDKSQGER---------DWVLNQFR- 748
++ I+F T+ L D L + I N F I + + R VL FR
Sbjct: 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGXTLPAQKCVLEAFRA 449
Query: 749 SGKSPILVATDVAARGLDIKDIRVVINYDFPNGV 782
SG + IL+AT VA G+DI + +VI Y++ V
Sbjct: 450 SGDNNILIATSVADEGIDIAECNLVILYEYVGNV 483
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 120/308 (38%), Gaps = 39/308 (12%)
Query: 481 TPIQAQTWPIALQ------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534
TP QAQ L D + G GKT + AF+ + N V V
Sbjct: 605 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------NHKQVAV 657
Query: 535 LAPTRELATQIQDE-ANKFGRS-SRLSCTCLYGGAPKGPQ-LRELDQGA-DIVVATPGRL 590
L PT LA Q D ++F R+ + A + Q L E+ +G DI++ T L
Sbjct: 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 717
Query: 591 NDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650
+ F + LL++DE R F + ++ + M + L TAT
Sbjct: 718 Q-----SDVKFKDLGLLIVDEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLN 767
Query: 651 IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCS 710
+A + + + LA + ++ +V + + ILR RG +V +
Sbjct: 768 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR-------EAILREILRGGQVYYLYN 820
Query: 711 ----TKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766
++ ++LA + AI HG + E + V+N F + +LV T + G+D
Sbjct: 821 DVENIQKAAERLAELVPEARIAIG-HGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 879
Query: 767 IKDIRVVI 774
I +I
Sbjct: 880 IPTANTII 887
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGRNFG--AIAIHG-----DKSQGERDWVLNQ 746
+++ + +G II+C +++ +Q+ S+ +N G A A H DK+ R W N+
Sbjct: 259 KLINGRYKGQSGIIYCFSQKDSEQVTVSL-QNLGIHAGAYHANLEPEDKTTVHRKWSANE 317
Query: 747 FRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDY 785
+ ++VAT G+D D+R VI++ +E+Y
Sbjct: 318 IQ-----VVVATVAFGMGIDKPDVRFVIHHSMSKSMENY 351
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 482 PIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF 516
P+Q +T + + G+++ + TG GK+L Y +PA
Sbjct: 47 PLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL 81
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 710 STKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767
S + + L++ + F +HG SQ E+D V+ +F G+ ILV+T V G+D+
Sbjct: 598 SAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 655
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 700 ERGSRVIIFCSTKRLCDQLA---RSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILV 756
ER RV++ TK++ + L + IG + H + ER ++ R GK +LV
Sbjct: 449 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYL--HSEIKTLERIEIIRDLRLGKYDVLV 506
Query: 757 ATDVAARGLDIKDIRVVINYD 777
++ GLDI ++ +V D
Sbjct: 507 GINLLREGLDIPEVSLVAILD 527
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 700 ERGSRVIIFCSTKRLCDQLA---RSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILV 756
ER RV++ TK++ + L + IG + H + ER ++ R GK +LV
Sbjct: 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYL--HSEIKTLERIEIIRDLRLGKYDVLV 500
Query: 757 ATDVAARGLDIKDIRVVINYD 777
++ GLDI ++ +V D
Sbjct: 501 GINLLREGLDIPEVSLVAILD 521
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 700 ERGSRVIIFCSTKRLCDQLARSIGRNFGAIA-IHGDKSQGERDWVLNQFRSGKSPILVAT 758
ER R ++ TK++ + L + +A +H + ER ++ R GK +LV
Sbjct: 468 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI 527
Query: 759 DVAARGLDIKDIRVVINYD 777
++ GLDI ++ +V D
Sbjct: 528 NLLREGLDIPEVSLVAILD 546
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 700 ERGSRVIIFCSTKRLCDQLARSIGRNFGAIA-IHGDKSQGERDWVLNQFRSGKSPILVAT 758
ER R ++ TK++ + L + +A +H + ER ++ R GK +LV
Sbjct: 443 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI 502
Query: 759 DVAARGLDIKDIRVVINYD 777
++ GLDI ++ +V D
Sbjct: 503 NLLREGLDIPEVSLVAILD 521
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 700 ERGSRVIIFCSTKRLCDQLARSIGRNFGAIA-IHGDKSQGERDWVLNQFRSGKSPILVAT 758
ER R ++ TK++ + L + +A +H + ER ++ R GK +LV
Sbjct: 442 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI 501
Query: 759 DVAARGLDIKDIRVVINYD 777
++ GLDI ++ +V D
Sbjct: 502 NLLREGLDIPEVSLVAILD 520
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 700 ERGSRVIIFCSTKRLCDQLARSIGRNFGAIA-IHGDKSQGERDWVLNQFRSGKSPILVAT 758
ER R ++ TK++ + L + +A +H + ER ++ R GK +LV
Sbjct: 443 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI 502
Query: 759 DVAARGLDIKDIRVVINYD 777
++ GLDI ++ +V D
Sbjct: 503 NLLREGLDIPEVSLVAILD 521
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 700 ERGSRVIIFCSTKRLCDQLARSIGRNFGAIA-IHGDKSQGERDWVLNQFRSGKSPILVAT 758
ER R ++ TK++ + L + +A +H + ER ++ R GK +LV
Sbjct: 443 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI 502
Query: 759 DVAARGLDIKDIRVVINYD 777
++ GLDI ++ +V D
Sbjct: 503 NLLREGLDIPEVSLVAILD 521
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 706 IIFCSTKRLCDQLARSIGRN----F---GAIAIHGDKSQGE------RDWVLNQFR-SGK 751
I+F T+ L D L I N F G + G +Q + +L+ F+ SG
Sbjct: 401 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 460
Query: 752 SPILVATDVAARGLDIKDIRVVINYDFPNGV 782
IL+AT VA G+DI +VI Y++ V
Sbjct: 461 HNILIATSVADEGIDIAQCNLVILYEYVGNV 491
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 706 IIFCSTKRLCDQLARSIGRN----F---GAIAIHGDKSQGE------RDWVLNQFR-SGK 751
I+F T+ L D L I N F G + G +Q + +L+ F+ SG
Sbjct: 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 461
Query: 752 SPILVATDVAARGLDIKDIRVVINYDFPNGV 782
IL+AT VA G+DI +VI Y++ V
Sbjct: 462 HNILIATSVADEGIDIAQCNLVILYEYVGNV 492
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY+N TN +Q+E+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWER 36
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 706 IIFCSTKRLCDQLARSIGRN----F---GAIAIHGDKSQGE------RDWVLNQFR-SGK 751
I+F T+ L D L I N F G + G +Q + +L+ F+ SG
Sbjct: 393 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 452
Query: 752 SPILVATDVAARGLDIKDIRVVINYDFPNGV 782
IL+AT VA G+DI +VI Y++ V
Sbjct: 453 HNILIATSVADEGIDIAQCNLVILYEYVGNV 483
>pdb|3KQL|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQL|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQN|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|C Chain C, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|D Chain D, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|E Chain E, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|F Chain F, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
Length = 437
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 38/197 (19%)
Query: 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA---DRMLDMGFEPQIRKIVN 629
+R + GA I +T G+ L G +++ DE D +G + +
Sbjct: 68 VRTITTGAPITYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ--A 122
Query: 630 EMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE 689
E R ++ TAT P V V N++E+A + +P K
Sbjct: 123 ETAGARLVVLATATPP------------GSVTVPHPNIEEVALSST-----GEIPFYGKA 165
Query: 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFR 748
++ I +G R +IFC +K+ CD+LA + G A+A + R ++
Sbjct: 166 IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYY-------RGLDVSVIP 213
Query: 749 SGKSPILVATDVAARGL 765
+ I+VATD G
Sbjct: 214 TSGDVIVVATDALMTGF 230
>pdb|3KQH|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQH|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQK|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQK|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
Length = 436
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 38/197 (19%)
Query: 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA---DRMLDMGFEPQIRKIVN 629
+R + GA I +T G+ L G +++ DE D +G + +
Sbjct: 68 VRTITTGAPITYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ--A 122
Query: 630 EMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE 689
E R ++ TAT P V V N++E+A + +P K
Sbjct: 123 ETAGARLVVLATATPP------------GSVTVPHPNIEEVALSST-----GEIPFYGKA 165
Query: 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFR 748
++ I +G R +IFC +K+ CD+LA + G A+A + R ++
Sbjct: 166 IPIETI-----KGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYY-------RGLDVSVIP 213
Query: 749 SGKSPILVATDVAARGL 765
+ I+VATD G
Sbjct: 214 TSGDVIVVATDALMTGF 230
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 703 SRVIIFCSTKRLCDQLARSIGRN--FGAIAIHGDKSQGERDW-----------VLNQFRS 749
+R ++F T+ L L + + N I +G RD VL+ F++
Sbjct: 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691
Query: 750 GK-SPILVATDVAARGLDIKDIRVVINYDFPNGV 782
K + +L+AT VA G+DI +V+ Y++ V
Sbjct: 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNV 725
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 703 SRVIIFCSTKRLCDQLARSIGRN--FGAIAIHGDKSQGERDW-----------VLNQFRS 749
+R ++F T+ L L + + N I +G RD VL+ F++
Sbjct: 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450
Query: 750 GK-SPILVATDVAARGLDIKDIRVVINYDFPNGV 782
K + +L+AT VA G+DI +V+ Y++ V
Sbjct: 451 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNV 484
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 456 YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIAL-QGRDIVAIAKTGSGKTLGYLIP 514
YR HE S F + W + QG+ +A TG GKT ++
Sbjct: 54 YRFYHEFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMT 113
Query: 515 AFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK-FG 553
A L R+ + PTV ++ T E ++ DE K FG
Sbjct: 114 ALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFG 153
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 703 SRVIIFCSTKRLCDQLARSIGRN--FGAIAIHGDKSQGERDW-----------VLNQFRS 749
+R ++F T+ L L + + N I +G RD VL+ F++
Sbjct: 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691
Query: 750 GK-SPILVATDVAARGLDIKDIRVVINYDFPNGV 782
K + +L+AT VA G+DI +V+ Y++ V
Sbjct: 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNV 725
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKXXXXXXXXXXXXXXXXSTPKLAPIPV 77
D+ LP W+ + S+G +YY+N TN +Q+E+ + + + + V
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLV 62
Query: 78 AHS 80
AHS
Sbjct: 63 AHS 65
>pdb|4A92|A Chain A, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor.
pdb|4A92|B Chain B, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor
Length = 666
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 31/164 (18%)
Query: 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA---DRMLDMGFEPQIRKIVN 629
+R + GA + +T G+ L G +++ DE D +G + +
Sbjct: 291 VRTITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ--A 345
Query: 630 EMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE 689
E R ++ TAT P V V N++E+A + + +P K
Sbjct: 346 ETAGARLVVLATATPPGSV------------TVPHPNIEEVALS-----NTGEIPFYGKA 388
Query: 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIH 732
++ I RG R +IFC +K+ CD+LA + G A+A +
Sbjct: 389 IPIEAI-----RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYY 427
>pdb|4B75|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B75|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 31/164 (18%)
Query: 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA---DRMLDMGFEPQIRKIVN 629
+R + GA + +T G+ L G +++ DE D +G + +
Sbjct: 291 VRTITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ--A 345
Query: 630 EMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE 689
E R ++ TAT P V V N++E+A + + +P K
Sbjct: 346 ETAGARLVVLATATPPGSV------------TVPHPNIEEVALS-----NTGEIPFYGKA 388
Query: 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIH 732
++ I RG R +IFC +K+ CD+LA + G A+A +
Sbjct: 389 IPIEAI-----RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYY 427
>pdb|3O8B|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8B|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|4B71|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B71|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 31/164 (18%)
Query: 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA---DRMLDMGFEPQIRKIVN 629
+R + GA + +T G+ L G +++ DE D +G + +
Sbjct: 291 VRTITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ--A 345
Query: 630 EMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE 689
E R ++ TAT P V V N++E+A + + +P K
Sbjct: 346 ETAGARLVVLATATPPGSV------------TVPHPNIEEVALS-----NTGEIPFYGKA 388
Query: 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIH 732
++ I RG R +IFC +K+ CD+LA + G A+A +
Sbjct: 389 IPIEAI-----RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYY 427
>pdb|4B6E|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6E|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 683
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 31/164 (18%)
Query: 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA---DRMLDMGFEPQIRKIVN 629
+R + GA + +T G+ L G +++ DE D +G + +
Sbjct: 291 VRTITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ--A 345
Query: 630 EMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE 689
E R ++ TAT P V V N++E+A + + +P K
Sbjct: 346 ETAGARLVVLATATPP------------GSVTVPHPNIEEVALS-----NTGEIPFYGKA 388
Query: 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIH 732
++ I RG R +IFC +K+ CD+LA + G A+A +
Sbjct: 389 IPIEAI-----RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYY 427
>pdb|1CU1|A Chain A, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
pdb|1CU1|B Chain B, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
Length = 645
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 31/164 (18%)
Query: 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA---DRMLDMGFEPQIRKIVN 629
+R + GA + +T G+ L G +++ DE D +G + +
Sbjct: 270 VRTITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ--A 324
Query: 630 EMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE 689
E R ++ TAT P V V N++E+A + + +P K
Sbjct: 325 ETAGARLVVLATATPP------------GSVTVPHPNIEEVALS-----NTGEIPFYGKA 367
Query: 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIH 732
++ I RG R +IFC +K+ CD+LA + G A+A +
Sbjct: 368 IPIEAI-----RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYY 406
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY+N TN +Q+E+
Sbjct: 3 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWER 36
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
Length = 167
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY+N TN +Q+E+
Sbjct: 7 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWER 40
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product
Derivatives
Length = 166
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY+N TN +Q+E+
Sbjct: 6 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWER 39
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY+N TN +Q+E+
Sbjct: 7 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWER 40
>pdb|2ZJO|A Chain A, Crystal Structure Of Hepatitis C Virus Ns3 Helicase With A
Novel Inhibitor
Length = 482
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 701 RGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDV 760
+G R +IFC +K+ CD+LA + A+ IH D ++ + + ++VATD
Sbjct: 205 KGGRHLIFCHSKKKCDELAAKL----SALGIHAVAYYRGLD--VSVIPASGNVVVVATDA 258
Query: 761 AARGL 765
G
Sbjct: 259 LMTGF 263
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo
Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY+N TN +Q+E+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWER 36
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY+N TN +Q+E+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWER 36
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline
Recognition By Group Iv Ww Domains
Length = 167
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY+N TN +Q+E+
Sbjct: 7 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWER 40
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 609 LDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGN-- 666
L+ D L G P+ +I+NE+ +TL+ TWP D + A +V+ QV++ N
Sbjct: 352 LERWDVKLVKGLLPRHMQIINEINTRFKTLV-EKTWPGDEKVWAKLAVVHDKQVHMANLC 410
Query: 667 -VDELAANKAITQHVEVV 683
V A N H ++V
Sbjct: 411 VVGGFAVNGVAALHSDLV 428
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 609 LDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGN-- 666
L+ D L G P+ +I+NE+ +TL+ TWP D + A +V+ QV++ N
Sbjct: 352 LERWDVKLVKGLLPRHMQIINEINTRFKTLV-EKTWPGDEKVWAKLAVVHDKQVHMANLC 410
Query: 667 -VDELAANKAITQHVEVV 683
V A N H ++V
Sbjct: 411 VVGGFAVNGVAALHSDLV 428
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 609 LDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGN-- 666
L+ D L G P+ +I+NE+ +TL+ TWP D + A +V+ QV++ N
Sbjct: 353 LERWDVKLVKGLLPRHMQIINEINTRFKTLV-EKTWPGDEKVWAKLAVVHDKQVHMANLC 411
Query: 667 -VDELAANKAITQHVEVV 683
V A N H ++V
Sbjct: 412 VVGGFAVNGVAALHSDLV 429
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 609 LDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGN-- 666
L+ D L G P+ +I+NE+ +TL+ TWP D + A +V+ QV++ N
Sbjct: 352 LERWDVKLVKGLLPRHMQIINEINTRFKTLV-EKTWPGDEKVWAKLAVVHDKQVHMANLC 410
Query: 667 -VDELAANKAITQHVEVV 683
V A N H ++V
Sbjct: 411 VVGGFAVNGVAALHSDLV 428
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY+N TN Q+E+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNAAQWER 36
>pdb|1MJG|M Chain M, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|N Chain N, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|O Chain O, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|P Chain P, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
Length = 729
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 4 AEATTASLGPRYAPDDPTLPKPWKGLI 30
AE A +Y PD+P LP PW G I
Sbjct: 110 AEIIEALRYLKYKPDEPLLPPPWTGFI 136
>pdb|1OAO|C Chain C, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|D Chain D, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|M Chain M, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|N Chain N, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|O Chain O, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|P Chain P, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|M Chain M, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|N Chain N, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|O Chain O, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|P Chain P, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 729
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 4 AEATTASLGPRYAPDDPTLPKPWKGLI 30
AE A +Y PD+P LP PW G I
Sbjct: 110 AEIIEALRYLKYKPDEPLLPPPWTGFI 136
>pdb|3I04|M Chain M, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|N Chain N, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|O Chain O, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|P Chain P, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 728
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 4 AEATTASLGPRYAPDDPTLPKPWKGLI 30
AE A +Y PD+P LP PW G I
Sbjct: 109 AEIIEALRYLKYKPDEPLLPPPWTGFI 135
>pdb|2F55|A Chain A, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
pdb|2F55|B Chain B, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
pdb|2F55|C Chain C, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
Length = 435
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 701 RGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIH 732
+G R +IFC +K+ CD+LA + G A+A +
Sbjct: 171 KGGRHLIFCHSKKKCDELAAKLTGLGLNAVAYY 203
>pdb|8OHM|A Chain A, Crystal Structure Of Rna Helicase From Genotype 1b
Hepatitis C Virus: Mechanism Of Unwinding Duplex Rna
Length = 435
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 701 RGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759
RG R +IFC +K+ CD+LA + A+A + R ++ + ++VATD
Sbjct: 171 RGGRHLIFCHSKKKCDELAAKLSALGLNAVAYY-------RGLDVSVIPTSGDVVVVATD 223
Query: 760 VAARG 764
G
Sbjct: 224 ALMTG 228
>pdb|3P4Y|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
- P2 Form
Length = 415
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 492 LQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551
+QG+ +A TG GKT ++ A L R+ + PTV ++ T E ++ DE K
Sbjct: 35 VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVK 94
Query: 552 -FGRSSRL 558
FG S +
Sbjct: 95 IFGFYSSM 102
>pdb|3OIY|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3OIY|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 414
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 492 LQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551
+QG+ +A TG GKT ++ A L R+ + PTV ++ T E ++ DE K
Sbjct: 34 VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVK 93
Query: 552 -FGRSSRL 558
FG S +
Sbjct: 94 IFGFYSSM 101
>pdb|3P4X|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3P4X|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 413
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 492 LQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551
+QG+ +A TG GKT ++ A L R+ + PTV ++ T E ++ DE K
Sbjct: 33 VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVK 92
Query: 552 -FGRSSRL 558
FG S +
Sbjct: 93 IFGFYSSM 100
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY N TN +Q+E+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYANHITNASQWER 36
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
D+ LP W+ + S+G +YY+N TN +Q E+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQAER 36
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 22 LPKPWKGLIDGSTGLLYYWNPETNVTQYEK 51
LP W+ + S+G +YY+N TN +Q+E+
Sbjct: 2 LPPGWEKAMSRSSGRVYYFNHITNASQWER 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,369,615
Number of Sequences: 62578
Number of extensions: 1020949
Number of successful extensions: 2465
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2210
Number of HSP's gapped (non-prelim): 140
length of query: 1134
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1025
effective length of database: 8,152,335
effective search space: 8356143375
effective search space used: 8356143375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)