Query 047890
Match_columns 1134
No_of_seqs 704 out of 4653
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 5.6E-66 1.2E-70 600.5 39.9 381 458-838 92-478 (519)
2 PTZ00110 helicase; Provisional 100.0 3.6E-57 7.7E-62 548.8 53.0 379 458-837 131-513 (545)
3 KOG0330 ATP-dependent RNA heli 100.0 4.2E-58 9E-63 504.1 28.7 370 450-826 54-425 (476)
4 KOG0336 ATP-dependent RNA heli 100.0 3.6E-58 7.7E-63 504.2 27.7 370 467-838 230-602 (629)
5 PRK10590 ATP-dependent RNA hel 100.0 9E-56 1.9E-60 527.5 46.0 362 459-823 3-367 (456)
6 KOG0339 ATP-dependent RNA heli 100.0 6.8E-57 1.5E-61 504.9 32.8 374 462-837 228-604 (731)
7 PRK04537 ATP-dependent RNA hel 100.0 1.3E-54 2.9E-59 528.3 51.8 362 459-823 11-379 (572)
8 KOG0333 U5 snRNP-like RNA heli 100.0 2E-56 4.3E-61 504.4 32.1 377 456-835 244-652 (673)
9 COG0513 SrmB Superfamily II DN 100.0 5.6E-56 1.2E-60 534.0 38.0 364 457-823 29-396 (513)
10 KOG0328 Predicted ATP-dependen 100.0 1.8E-55 3.8E-60 465.5 26.9 379 449-834 19-399 (400)
11 PLN00206 DEAD-box ATP-dependen 100.0 2.5E-53 5.5E-58 513.2 41.8 376 457-835 121-502 (518)
12 KOG0335 ATP-dependent RNA heli 100.0 1.8E-54 3.9E-59 496.6 29.3 373 463-837 80-473 (482)
13 PRK11634 ATP-dependent RNA hel 100.0 1.2E-52 2.7E-57 514.3 47.4 349 459-814 8-358 (629)
14 PRK04837 ATP-dependent RNA hel 100.0 2.4E-52 5.1E-57 493.9 42.5 363 458-823 9-377 (423)
15 KOG0338 ATP-dependent RNA heli 100.0 4.1E-54 8.9E-59 483.6 25.9 362 455-820 179-545 (691)
16 KOG0342 ATP-dependent RNA heli 100.0 1E-53 2.3E-58 481.9 29.3 362 455-816 80-445 (543)
17 PRK11776 ATP-dependent RNA hel 100.0 2.2E-51 4.9E-56 490.5 39.4 356 459-822 6-363 (460)
18 KOG0341 DEAD-box protein abstr 100.0 4.8E-54 1E-58 469.1 14.8 378 456-837 169-558 (610)
19 KOG0326 ATP-dependent RNA heli 100.0 6.4E-53 1.4E-57 452.0 19.3 366 458-831 86-452 (459)
20 PRK11192 ATP-dependent RNA hel 100.0 1.5E-50 3.3E-55 479.9 41.2 362 459-823 3-367 (434)
21 KOG0343 RNA Helicase [RNA proc 100.0 2.2E-51 4.8E-56 464.9 29.4 354 456-811 68-425 (758)
22 KOG0345 ATP-dependent RNA heli 100.0 7.5E-51 1.6E-55 455.5 32.1 349 464-813 13-369 (567)
23 PRK01297 ATP-dependent RNA hel 100.0 2.4E-49 5.1E-54 474.8 45.5 366 456-824 86-458 (475)
24 KOG0340 ATP-dependent RNA heli 100.0 6.3E-51 1.4E-55 443.2 27.8 366 459-828 9-381 (442)
25 KOG0334 RNA helicase [RNA proc 100.0 4.3E-50 9.4E-55 486.6 29.5 372 466-839 374-751 (997)
26 KOG0348 ATP-dependent RNA heli 100.0 2.4E-49 5.1E-54 447.6 28.3 358 458-815 137-561 (708)
27 PTZ00424 helicase 45; Provisio 100.0 3.7E-48 8E-53 454.3 39.0 367 455-828 26-394 (401)
28 KOG0346 RNA helicase [RNA proc 100.0 1.7E-48 3.7E-53 432.9 27.2 363 457-820 19-422 (569)
29 KOG0327 Translation initiation 100.0 2.7E-46 5.9E-51 413.3 25.1 386 439-833 8-395 (397)
30 KOG0347 RNA helicase [RNA proc 100.0 3.2E-47 7E-52 431.3 16.7 365 457-825 181-587 (731)
31 KOG0332 ATP-dependent RNA heli 100.0 3.4E-45 7.4E-50 400.2 26.0 364 450-823 83-459 (477)
32 TIGR03817 DECH_helic helicase/ 100.0 2.3E-43 5E-48 440.1 35.5 342 464-821 21-401 (742)
33 KOG0337 ATP-dependent RNA heli 100.0 1.9E-44 4E-49 399.4 19.3 359 458-821 22-381 (529)
34 KOG4284 DEAD box protein [Tran 100.0 1.1E-43 2.3E-48 407.0 22.0 344 459-810 27-381 (980)
35 KOG0350 DEAD-box ATP-dependent 100.0 4E-43 8.7E-48 395.4 24.6 352 467-822 147-554 (620)
36 TIGR00614 recQ_fam ATP-depende 100.0 6.7E-42 1.4E-46 409.8 34.6 326 474-819 6-344 (470)
37 PLN03137 ATP-dependent DNA hel 100.0 5.1E-42 1.1E-46 425.9 33.8 325 474-818 455-797 (1195)
38 KOG0344 ATP-dependent RNA heli 100.0 2.9E-42 6.2E-47 397.7 27.3 370 464-836 143-523 (593)
39 TIGR00580 mfd transcription-re 100.0 4.6E-40 9.9E-45 414.6 36.7 354 469-848 441-816 (926)
40 PRK11057 ATP-dependent DNA hel 100.0 8.8E-40 1.9E-44 401.9 35.6 321 475-817 21-352 (607)
41 PRK13767 ATP-dependent helicas 100.0 1E-39 2.2E-44 414.6 35.0 340 466-807 19-397 (876)
42 TIGR01389 recQ ATP-dependent D 100.0 1.4E-39 3.1E-44 400.0 33.2 320 475-817 9-340 (591)
43 PRK10917 ATP-dependent DNA hel 100.0 6.6E-39 1.4E-43 398.3 38.9 351 475-851 258-633 (681)
44 TIGR00643 recG ATP-dependent D 100.0 8.1E-39 1.7E-43 394.9 38.8 357 470-851 227-610 (630)
45 PRK10689 transcription-repair 100.0 6.8E-39 1.5E-43 411.6 37.8 340 473-837 595-953 (1147)
46 PRK02362 ski2-like helicase; P 100.0 5.1E-39 1.1E-43 403.8 33.2 334 459-808 3-397 (737)
47 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.6E-38 1.2E-42 385.9 34.1 308 475-801 12-383 (844)
48 PRK00254 ski2-like helicase; P 100.0 1.4E-37 3.1E-42 389.9 34.4 336 460-809 4-389 (720)
49 COG1201 Lhr Lhr-like helicases 100.0 1.4E-36 3E-41 371.9 33.3 338 466-807 9-361 (814)
50 PRK01172 ski2-like helicase; P 100.0 1.5E-36 3.2E-41 378.8 33.4 333 460-809 4-379 (674)
51 PHA02558 uvsW UvsW helicase; P 100.0 1.4E-36 3E-41 366.3 28.6 400 361-800 3-444 (501)
52 KOG0329 ATP-dependent RNA heli 100.0 1.3E-37 2.9E-42 325.7 15.7 332 459-830 44-378 (387)
53 PRK09751 putative ATP-dependen 100.0 7E-36 1.5E-40 385.3 31.8 300 499-803 1-380 (1490)
54 COG0514 RecQ Superfamily II DN 100.0 1.9E-35 4E-40 351.0 28.6 328 469-819 9-348 (590)
55 COG1111 MPH1 ERCC4-like helica 100.0 8.3E-34 1.8E-38 323.6 33.5 323 478-809 14-482 (542)
56 COG1200 RecG RecG-like helicas 100.0 1.8E-33 3.8E-38 332.9 33.6 355 473-852 257-636 (677)
57 PHA02653 RNA helicase NPH-II; 100.0 1.1E-33 2.3E-38 346.6 31.2 311 481-810 166-516 (675)
58 PRK09401 reverse gyrase; Revie 100.0 1.8E-33 4E-38 362.4 32.4 297 475-795 77-431 (1176)
59 TIGR01587 cas3_core CRISPR-ass 100.0 1.6E-33 3.5E-38 326.0 26.9 299 496-809 1-337 (358)
60 TIGR01970 DEAH_box_HrpB ATP-de 100.0 5.9E-33 1.3E-37 347.1 32.2 302 485-811 8-339 (819)
61 PRK13766 Hef nuclease; Provisi 100.0 1.8E-31 3.8E-36 338.4 38.6 323 478-809 14-480 (773)
62 PRK11664 ATP-dependent RNA hel 100.0 2E-32 4.4E-37 343.0 29.5 301 485-810 11-341 (812)
63 PRK14701 reverse gyrase; Provi 100.0 2.4E-32 5.2E-37 358.5 30.2 317 475-815 76-463 (1638)
64 PRK12898 secA preprotein trans 100.0 7.6E-32 1.6E-36 325.9 31.5 315 479-810 103-588 (656)
65 COG1204 Superfamily II helicas 100.0 5.6E-32 1.2E-36 335.4 27.8 333 464-808 16-408 (766)
66 TIGR00603 rad25 DNA repair hel 100.0 2.5E-31 5.4E-36 324.6 31.5 322 478-824 254-625 (732)
67 KOG0349 Putative DEAD-box RNA 100.0 9.8E-33 2.1E-37 305.4 15.5 281 530-812 287-619 (725)
68 KOG0354 DEAD-box like helicase 100.0 9.7E-31 2.1E-35 313.7 30.3 331 467-807 50-528 (746)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 3.2E-30 6.9E-35 298.6 30.3 290 483-793 1-357 (357)
70 PRK09200 preprotein translocas 100.0 4.7E-30 1E-34 316.2 29.6 318 476-810 76-543 (790)
71 PRK04914 ATP-dependent helicas 100.0 1.7E-29 3.6E-34 318.0 34.6 334 479-822 152-617 (956)
72 TIGR01054 rgy reverse gyrase. 100.0 7.8E-30 1.7E-34 329.3 31.9 283 475-780 74-409 (1171)
73 TIGR03714 secA2 accessory Sec 100.0 1.2E-29 2.7E-34 309.8 30.5 318 479-810 68-539 (762)
74 KOG0351 ATP-dependent DNA heli 100.0 4E-30 8.7E-35 320.9 25.5 328 472-818 257-602 (941)
75 COG1202 Superfamily II helicas 100.0 6.3E-30 1.4E-34 292.1 24.7 331 462-807 199-552 (830)
76 TIGR00963 secA preprotein tran 100.0 2.4E-29 5.2E-34 305.5 30.6 316 479-811 56-520 (745)
77 KOG0352 ATP-dependent DNA heli 100.0 3.8E-30 8.3E-35 285.3 20.2 324 475-817 15-371 (641)
78 COG1205 Distinct helicase fami 100.0 2.5E-29 5.5E-34 315.7 30.2 330 467-806 58-420 (851)
79 KOG0952 DNA/RNA helicase MER3/ 100.0 3.4E-29 7.4E-34 302.0 25.7 332 472-809 103-492 (1230)
80 COG1197 Mfd Transcription-repa 100.0 3.1E-28 6.6E-33 302.0 33.1 345 479-848 594-959 (1139)
81 COG1061 SSL2 DNA or RNA helica 100.0 3.6E-28 7.9E-33 288.5 27.5 299 478-800 35-382 (442)
82 PRK09694 helicase Cas3; Provis 100.0 1.7E-27 3.6E-32 298.4 34.7 311 478-797 285-664 (878)
83 PRK05580 primosome assembly pr 100.0 3.1E-27 6.6E-32 293.4 33.5 310 479-811 144-552 (679)
84 PRK11131 ATP-dependent RNA hel 100.0 8.3E-28 1.8E-32 306.2 27.9 300 483-811 78-414 (1294)
85 KOG0353 ATP-dependent DNA heli 100.0 5.6E-28 1.2E-32 264.0 21.0 338 461-816 75-475 (695)
86 TIGR00595 priA primosomal prot 99.9 5.3E-26 1.2E-30 273.4 28.1 292 498-810 1-383 (505)
87 PLN03142 Probable chromatin-re 99.9 8.2E-26 1.8E-30 285.6 30.9 328 479-818 169-607 (1033)
88 cd00268 DEADc DEAD-box helicas 99.9 1.6E-25 3.5E-30 238.3 23.7 201 460-662 2-202 (203)
89 TIGR01967 DEAH_box_HrpA ATP-de 99.9 3.6E-25 7.8E-30 283.3 29.6 311 475-810 60-406 (1283)
90 KOG0390 DNA repair protein, SN 99.9 7E-25 1.5E-29 266.2 30.4 330 465-807 231-704 (776)
91 PRK11448 hsdR type I restricti 99.9 4.2E-25 9.2E-30 283.8 28.1 309 478-797 412-802 (1123)
92 PRK13104 secA preprotein trans 99.9 4E-24 8.7E-29 263.3 28.4 315 479-810 82-589 (896)
93 KOG0951 RNA helicase BRR2, DEA 99.9 1.8E-24 4E-29 263.4 23.1 332 470-809 300-703 (1674)
94 KOG0385 Chromatin remodeling c 99.9 5.4E-24 1.2E-28 250.5 25.0 330 479-820 167-609 (971)
95 PRK12904 preprotein translocas 99.9 4E-23 8.6E-28 254.4 29.1 316 479-811 81-576 (830)
96 KOG0947 Cytoplasmic exosomal R 99.9 1.8E-23 3.9E-28 250.1 22.7 310 479-808 297-723 (1248)
97 KOG0387 Transcription-coupled 99.9 2.1E-23 4.5E-28 247.0 22.7 317 479-807 205-655 (923)
98 PRK12899 secA preprotein trans 99.9 7.2E-23 1.6E-27 251.6 28.2 145 463-616 68-228 (970)
99 PRK12906 secA preprotein trans 99.9 3.8E-23 8.3E-28 253.7 25.5 315 479-810 80-555 (796)
100 KOG0948 Nuclear exosomal RNA h 99.9 2.8E-23 6E-28 243.3 19.5 308 479-808 129-539 (1041)
101 COG4098 comFA Superfamily II D 99.9 1.7E-21 3.6E-26 213.2 30.8 314 479-821 97-428 (441)
102 COG1203 CRISPR-associated heli 99.9 1.1E-22 2.4E-27 255.0 24.6 326 480-812 196-554 (733)
103 PF00270 DEAD: DEAD/DEAH box h 99.9 1.2E-22 2.7E-27 208.9 19.1 165 481-650 1-168 (169)
104 PRK13107 preprotein translocas 99.9 4.3E-22 9.3E-27 244.7 25.5 318 479-810 82-593 (908)
105 COG4581 Superfamily II RNA hel 99.9 6E-22 1.3E-26 246.5 25.1 315 474-804 115-533 (1041)
106 KOG0392 SNF2 family DNA-depend 99.9 1.2E-21 2.6E-26 239.0 23.1 330 479-816 975-1460(1549)
107 KOG0384 Chromodomain-helicase 99.9 8.8E-22 1.9E-26 241.5 18.3 316 478-806 369-807 (1373)
108 KOG0950 DNA polymerase theta/e 99.9 3.7E-21 8.1E-26 232.7 21.4 332 472-817 216-620 (1008)
109 COG1198 PriA Primosomal protei 99.8 1E-19 2.2E-24 222.9 27.3 315 478-812 197-607 (730)
110 COG4096 HsdR Type I site-speci 99.8 4.4E-20 9.5E-25 221.8 21.8 296 478-795 164-525 (875)
111 TIGR00348 hsdR type I site-spe 99.8 5.2E-19 1.1E-23 220.0 30.9 299 480-795 239-634 (667)
112 KOG0389 SNF2 family DNA-depend 99.8 1.5E-19 3.2E-24 214.3 22.6 334 476-821 397-899 (941)
113 TIGR00631 uvrb excinuclease AB 99.8 2.7E-18 5.7E-23 211.9 32.1 126 690-816 430-561 (655)
114 COG0556 UvrB Helicase subunit 99.8 7.3E-19 1.6E-23 201.7 23.6 164 634-807 386-556 (663)
115 KOG1000 Chromatin remodeling p 99.8 4.4E-19 9.5E-24 201.1 21.2 315 478-808 197-601 (689)
116 TIGR01407 dinG_rel DnaQ family 99.8 2.3E-18 5E-23 220.1 30.3 121 701-822 673-830 (850)
117 COG1643 HrpA HrpA-like helicas 99.8 4.1E-18 8.9E-23 211.6 26.1 307 482-810 53-389 (845)
118 smart00487 DEXDc DEAD-like hel 99.8 3.3E-18 7.2E-23 177.7 20.4 186 474-664 3-190 (201)
119 PRK12900 secA preprotein trans 99.8 3.2E-18 6.9E-23 211.5 21.9 125 685-811 580-714 (1025)
120 PRK05298 excinuclease ABC subu 99.8 8.2E-17 1.8E-21 199.8 32.4 137 692-829 436-587 (652)
121 KOG1123 RNA polymerase II tran 99.8 3.6E-18 7.7E-23 193.6 17.6 294 478-796 301-635 (776)
122 PRK12326 preprotein translocas 99.8 4.7E-17 1E-21 196.6 26.7 314 479-810 78-549 (764)
123 COG1110 Reverse gyrase [DNA re 99.8 9.5E-17 2.1E-21 195.5 29.3 278 476-779 80-416 (1187)
124 COG4889 Predicted helicase [Ge 99.8 5.1E-18 1.1E-22 201.2 15.7 318 477-805 159-583 (1518)
125 KOG0922 DEAH-box RNA helicase 99.8 2.9E-17 6.3E-22 194.0 21.8 304 484-810 56-392 (674)
126 KOG0920 ATP-dependent RNA heli 99.7 7.2E-17 1.6E-21 199.8 23.3 314 481-809 175-545 (924)
127 PRK13103 secA preprotein trans 99.7 3.5E-16 7.6E-21 193.2 24.7 314 479-810 82-593 (913)
128 KOG4439 RNA polymerase II tran 99.7 1.3E-16 2.8E-21 187.3 19.4 123 688-810 730-858 (901)
129 KOG0386 Chromatin remodeling c 99.7 7.5E-17 1.6E-21 195.5 14.9 330 479-819 394-847 (1157)
130 KOG0949 Predicted helicase, DE 99.7 4.3E-16 9.3E-21 187.7 20.9 158 479-645 511-672 (1330)
131 PRK07246 bifunctional ATP-depe 99.7 3.3E-15 7.2E-20 189.3 30.1 120 700-822 645-799 (820)
132 KOG0923 mRNA splicing factor A 99.7 9.2E-16 2E-20 179.2 20.4 308 480-808 266-606 (902)
133 KOG1002 Nucleotide excision re 99.7 2.6E-15 5.7E-20 170.3 22.9 116 703-820 639-759 (791)
134 KOG0924 mRNA splicing factor A 99.7 1.4E-15 2.9E-20 177.7 20.3 303 480-808 357-697 (1042)
135 KOG1015 Transcription regulato 99.7 7.3E-16 1.6E-20 184.2 17.4 119 689-807 1128-1274(1567)
136 PRK12903 secA preprotein trans 99.7 8.5E-15 1.9E-19 179.3 26.2 314 479-810 78-541 (925)
137 KOG0388 SNF2 family DNA-depend 99.7 2E-15 4.3E-20 176.5 18.4 145 688-837 1029-1176(1185)
138 COG0553 HepA Superfamily II DN 99.6 1E-14 2.3E-19 187.3 24.4 338 477-822 336-834 (866)
139 PRK08074 bifunctional ATP-depe 99.6 1.4E-13 3E-18 177.5 32.6 121 701-821 751-908 (928)
140 cd00046 DEXDc DEAD-like helica 99.6 7.7E-15 1.7E-19 143.6 16.3 144 495-644 1-144 (144)
141 KOG0391 SNF2 family DNA-depend 99.6 1.9E-14 4.2E-19 174.7 22.6 133 688-820 1261-1397(1958)
142 PF04851 ResIII: Type III rest 99.6 3.6E-15 7.8E-20 154.8 13.1 152 479-645 3-183 (184)
143 CHL00122 secA preprotein trans 99.6 8.4E-14 1.8E-18 171.7 26.8 126 480-616 77-209 (870)
144 KOG0926 DEAH-box RNA helicase 99.6 5.5E-15 1.2E-19 175.2 15.3 300 485-808 262-704 (1172)
145 cd00079 HELICc Helicase superf 99.6 6.6E-15 1.4E-19 144.5 13.5 118 687-804 12-131 (131)
146 TIGR03117 cas_csf4 CRISPR-asso 99.6 5.5E-13 1.2E-17 163.1 31.7 106 701-808 469-616 (636)
147 KOG4150 Predicted ATP-dependen 99.6 8.9E-15 1.9E-19 167.8 13.8 321 476-805 283-637 (1034)
148 KOG0921 Dosage compensation co 99.6 2.1E-13 4.4E-18 163.6 25.5 304 485-805 384-771 (1282)
149 PRK12902 secA preprotein trans 99.5 1E-12 2.2E-17 162.0 25.6 127 479-616 85-218 (939)
150 KOG0953 Mitochondrial RNA heli 99.5 4.5E-13 9.7E-18 155.0 18.5 265 497-807 194-476 (700)
151 PRK14873 primosome assembly pr 99.5 3.7E-12 8.1E-17 157.5 24.9 269 502-806 168-537 (665)
152 PRK11747 dinG ATP-dependent DN 99.5 1E-11 2.2E-16 155.8 29.0 118 700-820 532-688 (697)
153 PF00271 Helicase_C: Helicase 99.5 7.5E-14 1.6E-18 126.2 6.8 73 724-796 6-78 (78)
154 KOG0951 RNA helicase BRR2, DEA 99.5 2.1E-12 4.5E-17 159.6 20.7 312 479-817 1143-1503(1674)
155 COG1199 DinG Rad3-related DNA 99.5 2.2E-11 4.7E-16 152.7 30.1 120 702-824 479-635 (654)
156 KOG0925 mRNA splicing factor A 99.4 3.6E-12 7.8E-17 145.3 20.0 298 484-808 51-387 (699)
157 TIGR02562 cas3_yersinia CRISPR 99.4 1.2E-11 2.6E-16 154.5 23.7 309 480-797 409-881 (1110)
158 PF02399 Herpes_ori_bp: Origin 99.4 1.6E-11 3.4E-16 150.3 23.4 288 497-807 52-387 (824)
159 TIGR00604 rad3 DNA repair heli 99.4 1E-10 2.2E-15 147.6 29.9 74 475-552 6-83 (705)
160 KOG1016 Predicted DNA helicase 99.4 1.5E-12 3.3E-17 153.6 11.3 115 702-816 719-855 (1387)
161 PF00176 SNF2_N: SNF2 family N 99.4 2.7E-12 5.9E-17 144.2 12.7 156 483-644 1-172 (299)
162 PF06862 DUF1253: Protein of u 99.3 2.3E-10 5.1E-15 134.2 27.1 292 527-818 35-425 (442)
163 PRK12901 secA preprotein trans 99.3 4.9E-11 1.1E-15 148.6 20.5 119 690-810 616-743 (1112)
164 smart00490 HELICc helicase sup 99.3 6.6E-12 1.4E-16 112.8 7.4 79 718-796 3-82 (82)
165 COG0610 Type I site-specific r 99.2 1.3E-09 2.8E-14 140.5 23.0 280 495-795 274-636 (962)
166 PRK15483 type III restriction- 99.0 9.7E-08 2.1E-12 120.7 26.8 73 751-823 501-583 (986)
167 smart00488 DEXDc2 DEAD-like he 99.0 7E-09 1.5E-13 117.5 14.5 76 476-553 6-85 (289)
168 smart00489 DEXDc3 DEAD-like he 99.0 7E-09 1.5E-13 117.5 14.5 76 476-553 6-85 (289)
169 KOG2340 Uncharacterized conser 98.9 2.7E-08 5.8E-13 115.4 18.6 343 476-819 213-679 (698)
170 COG0653 SecA Preprotein transl 98.9 2.4E-08 5.3E-13 123.6 18.0 315 480-809 79-546 (822)
171 PF07652 Flavi_DEAD: Flaviviru 98.9 6.5E-09 1.4E-13 104.4 10.0 134 494-648 4-140 (148)
172 KOG1001 Helicase-like transcri 98.7 6.7E-08 1.5E-12 119.6 13.2 117 703-819 540-659 (674)
173 PF07517 SecA_DEAD: SecA DEAD- 98.6 1.9E-07 4E-12 104.1 12.4 128 478-616 76-210 (266)
174 COG3587 Restriction endonuclea 98.5 9.3E-06 2E-10 99.6 21.8 74 750-823 482-568 (985)
175 PF00397 WW: WW domain; Inter 98.4 8.3E-08 1.8E-12 71.9 2.0 31 22-52 1-31 (31)
176 COG3421 Uncharacterized protei 98.4 1.1E-06 2.4E-11 103.6 12.0 141 499-646 2-167 (812)
177 PF13872 AAA_34: P-loop contai 98.4 3.5E-06 7.5E-11 94.5 14.0 160 480-651 38-227 (303)
178 KOG3973 Uncharacterized conser 98.4 1.3E-06 2.9E-11 96.4 9.4 28 467-494 7-34 (465)
179 TIGR00596 rad1 DNA repair prot 98.4 3.8E-06 8.3E-11 106.4 14.8 67 577-643 5-71 (814)
180 KOG1802 RNA helicase nonsense 98.3 4.9E-06 1.1E-10 99.1 13.4 77 471-553 402-478 (935)
181 KOG0921 Dosage compensation co 98.3 2.6E-06 5.7E-11 104.0 10.4 42 476-517 403-444 (1282)
182 KOG4368 Predicted RNA binding 98.3 1.1E-06 2.3E-11 102.5 6.5 11 1105-1115 711-721 (757)
183 PF13086 AAA_11: AAA domain; P 98.2 4.7E-06 1E-10 89.8 10.2 73 479-551 1-75 (236)
184 KOG0952 DNA/RNA helicase MER3/ 98.2 1.8E-06 3.9E-11 107.4 5.8 259 479-753 927-1207(1230)
185 PF13604 AAA_30: AAA domain; P 98.1 9.8E-06 2.1E-10 86.9 10.4 123 479-643 1-130 (196)
186 PF02562 PhoH: PhoH-like prote 98.1 1.6E-05 3.4E-10 85.6 11.5 146 478-643 3-155 (205)
187 TIGR00376 DNA helicase, putati 98.1 0.0001 2.2E-09 92.4 19.8 68 478-552 156-224 (637)
188 smart00456 WW Domain with 2 co 98.1 2.3E-06 5.1E-11 64.4 2.6 31 22-53 1-31 (32)
189 KOG3259 Peptidyl-prolyl cis-tr 98.1 1.6E-06 3.6E-11 85.5 2.1 41 17-57 2-42 (163)
190 PF13307 Helicase_C_2: Helicas 98.0 2E-05 4.4E-10 82.3 8.6 106 701-808 8-150 (167)
191 PF09848 DUF2075: Uncharacteri 97.9 4.5E-05 9.7E-10 89.1 10.1 108 496-630 3-117 (352)
192 KOG0383 Predicted helicase [Ge 97.8 1.6E-06 3.5E-11 106.6 -3.1 76 689-764 617-696 (696)
193 PRK10875 recD exonuclease V su 97.8 0.00021 4.6E-09 88.7 14.7 143 480-643 153-301 (615)
194 PRK10536 hypothetical protein; 97.8 0.0004 8.8E-09 77.0 14.5 148 473-640 53-209 (262)
195 TIGR01447 recD exodeoxyribonuc 97.8 0.00035 7.6E-09 86.6 15.5 143 481-643 147-295 (586)
196 cd00201 WW Two conserved trypt 97.7 2.8E-05 6.1E-10 57.9 2.6 30 23-53 1-30 (31)
197 KOG1805 DNA replication helica 97.7 0.00088 1.9E-08 83.8 16.7 129 477-616 667-809 (1100)
198 PRK13889 conjugal transfer rel 97.7 0.0012 2.5E-08 85.8 18.6 126 475-643 343-470 (988)
199 KOG1803 DNA helicase [Replicat 97.6 0.00013 2.9E-09 87.3 8.7 65 479-550 185-250 (649)
200 KOG3973 Uncharacterized conser 97.5 0.0005 1.1E-08 76.6 11.1 6 827-832 319-324 (465)
201 KOG1132 Helicase of the DEAD s 97.5 0.00048 1E-08 85.5 11.8 77 479-555 21-136 (945)
202 TIGR01448 recD_rel helicase, p 97.5 0.00092 2E-08 85.1 14.5 126 478-643 322-452 (720)
203 PF12340 DUF3638: Protein of u 97.5 0.00073 1.6E-08 73.6 10.9 132 479-617 23-186 (229)
204 PRK11054 helD DNA helicase IV; 97.4 0.0084 1.8E-07 75.9 21.7 78 478-560 195-272 (684)
205 PRK13826 Dtr system oriT relax 97.4 0.0063 1.4E-07 79.7 19.9 134 467-643 370-505 (1102)
206 PRK07003 DNA polymerase III su 97.3 0.00072 1.6E-08 84.3 9.0 39 602-641 118-156 (830)
207 PF13245 AAA_19: Part of AAA d 97.2 0.001 2.2E-08 60.5 7.4 60 487-549 2-62 (76)
208 PRK07764 DNA polymerase III su 97.2 0.00062 1.4E-08 87.2 8.2 39 602-641 119-157 (824)
209 PF13401 AAA_22: AAA domain; P 97.2 0.0018 3.9E-08 63.8 9.5 24 494-517 4-27 (131)
210 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0051 1.1E-07 78.7 15.3 61 479-546 352-413 (744)
211 KOG4676 Splicing factor, argin 97.1 0.00026 5.6E-09 80.1 2.8 27 535-562 15-41 (479)
212 PRK06526 transposase; Provisio 97.0 0.0022 4.9E-08 71.6 9.5 111 489-647 93-204 (254)
213 cd00009 AAA The AAA+ (ATPases 97.0 0.0049 1.1E-07 60.5 11.0 20 494-513 19-38 (151)
214 KOG0298 DEAD box-containing he 97.0 0.0019 4.1E-08 82.8 9.5 146 494-644 374-550 (1394)
215 PRK08181 transposase; Validate 97.0 0.008 1.7E-07 67.8 13.5 121 480-648 88-213 (269)
216 PRK04296 thymidine kinase; Pro 97.0 0.0015 3.2E-08 69.8 7.3 111 496-643 4-114 (190)
217 PF00580 UvrD-helicase: UvrD/R 97.0 0.0009 2E-08 75.7 5.6 123 480-613 1-125 (315)
218 PRK11634 ATP-dependent RNA hel 96.9 0.1 2.2E-06 65.8 23.8 72 529-610 245-320 (629)
219 COG1875 NYN ribonuclease and A 96.9 0.0049 1.1E-07 70.6 10.4 144 475-641 224-385 (436)
220 KOG1131 RNA polymerase II tran 96.8 0.0076 1.6E-07 71.2 11.3 74 476-552 13-90 (755)
221 PRK14086 dnaA chromosomal repl 96.8 0.0038 8.1E-08 77.1 9.0 48 602-649 376-425 (617)
222 PRK14722 flhF flagellar biosyn 96.8 0.0048 1E-07 72.4 9.5 131 494-655 137-269 (374)
223 PRK12723 flagellar biosynthesi 96.8 0.019 4.1E-07 68.0 14.4 130 495-655 175-309 (388)
224 KOG4676 Splicing factor, argin 96.7 0.00085 1.8E-08 76.1 2.6 8 784-791 204-211 (479)
225 PRK14974 cell division protein 96.7 0.016 3.4E-07 67.4 12.9 130 496-656 142-276 (336)
226 smart00382 AAA ATPases associa 96.6 0.0029 6.3E-08 61.3 5.6 41 494-541 2-42 (148)
227 TIGR02760 TraI_TIGR conjugativ 96.6 0.049 1.1E-06 76.3 19.0 135 479-643 429-566 (1960)
228 PRK08691 DNA polymerase III su 96.6 0.0015 3.1E-08 81.4 3.9 40 601-641 117-156 (709)
229 PRK07952 DNA replication prote 96.6 0.027 5.9E-07 62.6 13.3 124 479-648 76-209 (244)
230 PRK12323 DNA polymerase III su 96.5 0.0041 8.9E-08 76.8 7.2 41 601-642 122-162 (700)
231 cd01120 RecA-like_NTPases RecA 96.5 0.027 5.8E-07 56.9 11.7 38 497-541 2-39 (165)
232 PF00448 SRP54: SRP54-type pro 96.5 0.0048 1E-07 66.3 6.3 128 497-655 4-136 (196)
233 PF13871 Helicase_C_4: Helicas 96.4 0.0086 1.9E-07 67.4 8.1 66 742-807 52-126 (278)
234 PRK11889 flhF flagellar biosyn 96.4 0.036 7.7E-07 65.3 13.3 129 495-656 242-375 (436)
235 PF05970 PIF1: PIF1-like helic 96.3 0.008 1.7E-07 70.7 7.7 60 479-545 1-66 (364)
236 cd01124 KaiC KaiC is a circadi 96.3 0.018 3.8E-07 60.5 9.4 49 497-553 2-50 (187)
237 PRK12422 chromosomal replicati 96.3 0.016 3.5E-07 69.9 9.9 113 495-655 142-256 (445)
238 PRK08116 hypothetical protein; 96.3 0.078 1.7E-06 59.9 14.8 125 480-649 89-226 (268)
239 PRK14958 DNA polymerase III su 96.2 0.0067 1.4E-07 74.3 6.2 39 602-641 118-156 (509)
240 KOG1513 Nuclear helicase MOP-3 96.2 0.005 1.1E-07 75.4 4.8 154 479-645 264-455 (1300)
241 PRK14951 DNA polymerase III su 96.2 0.0069 1.5E-07 75.4 6.2 39 602-641 123-161 (618)
242 PHA02533 17 large terminase pr 96.1 0.041 8.9E-07 67.8 12.4 123 479-617 59-183 (534)
243 PRK06893 DNA replication initi 96.1 0.011 2.5E-07 64.9 6.7 45 602-646 90-136 (229)
244 PRK08727 hypothetical protein; 96.0 0.014 3E-07 64.4 7.3 46 603-648 93-140 (233)
245 PRK14712 conjugal transfer nic 96.0 0.043 9.3E-07 74.4 12.8 65 478-545 834-900 (1623)
246 PRK14960 DNA polymerase III su 96.0 0.0071 1.5E-07 75.0 5.0 39 602-641 117-155 (702)
247 PRK05703 flhF flagellar biosyn 95.9 0.069 1.5E-06 64.2 12.9 128 494-655 221-354 (424)
248 KOG2548 SWAP mRNA splicing reg 95.9 0.006 1.3E-07 71.6 3.8 6 789-794 215-220 (653)
249 PRK05642 DNA replication initi 95.9 0.023 5.1E-07 62.7 8.2 44 603-646 97-141 (234)
250 KOG1847 mRNA splicing factor [ 95.9 0.0053 1.1E-07 73.3 3.2 16 497-512 208-223 (878)
251 PRK08084 DNA replication initi 95.9 0.0092 2E-07 65.9 4.9 42 604-645 98-141 (235)
252 PRK13709 conjugal transfer nic 95.8 0.071 1.5E-06 73.2 13.9 65 478-545 966-1032(1747)
253 KOG2888 Putative RNA binding p 95.8 0.0053 1.2E-07 68.3 2.7 9 540-548 84-92 (453)
254 smart00492 HELICc3 helicase su 95.8 0.034 7.3E-07 56.7 8.3 73 734-806 30-136 (141)
255 PRK14723 flhF flagellar biosyn 95.8 0.043 9.4E-07 69.5 10.8 126 496-655 187-317 (767)
256 smart00491 HELICc2 helicase su 95.8 0.033 7.1E-07 56.9 8.0 70 738-807 31-138 (142)
257 PTZ00112 origin recognition co 95.6 0.11 2.5E-06 65.9 13.4 28 602-630 868-895 (1164)
258 PRK14965 DNA polymerase III su 95.6 0.013 2.7E-07 73.1 5.1 40 601-641 117-156 (576)
259 PRK11773 uvrD DNA-dependent he 95.5 0.055 1.2E-06 69.4 10.7 109 479-614 9-119 (721)
260 COG1419 FlhF Flagellar GTP-bin 95.5 0.11 2.4E-06 61.2 12.0 131 494-655 203-335 (407)
261 TIGR01075 uvrD DNA helicase II 95.5 0.056 1.2E-06 69.3 10.7 109 478-614 3-114 (715)
262 PRK00771 signal recognition pa 95.5 0.064 1.4E-06 64.5 10.3 127 496-655 97-228 (437)
263 PRK06645 DNA polymerase III su 95.5 0.052 1.1E-06 66.4 9.6 23 495-517 44-66 (507)
264 PF14617 CMS1: U3-containing 9 95.4 0.032 7E-07 62.1 7.1 87 527-614 124-212 (252)
265 PRK10919 ATP-dependent DNA hel 95.4 0.045 9.7E-07 69.6 9.3 110 479-614 2-113 (672)
266 PRK11331 5-methylcytosine-spec 95.4 0.084 1.8E-06 63.3 10.7 34 480-513 180-213 (459)
267 PRK06835 DNA replication prote 95.3 0.16 3.4E-06 59.1 12.5 46 493-546 182-227 (329)
268 PF03354 Terminase_1: Phage Te 95.3 0.077 1.7E-06 64.8 10.5 71 482-555 1-80 (477)
269 PRK06921 hypothetical protein; 95.3 0.14 3.1E-06 57.7 11.8 45 494-545 117-161 (266)
270 cd01122 GP4d_helicase GP4d_hel 95.3 0.046 1E-06 61.3 7.9 119 492-618 28-155 (271)
271 PRK08769 DNA polymerase III su 95.3 0.13 2.7E-06 59.6 11.5 144 477-643 2-152 (319)
272 PRK00149 dnaA chromosomal repl 95.3 0.058 1.2E-06 65.4 9.2 49 495-549 149-197 (450)
273 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.11 2.3E-06 57.6 10.5 53 494-554 21-73 (237)
274 PRK09111 DNA polymerase III su 95.2 0.061 1.3E-06 67.2 9.5 40 601-641 130-169 (598)
275 KOG2888 Putative RNA binding p 95.2 0.011 2.5E-07 65.8 2.7 11 605-615 75-85 (453)
276 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.09 2E-06 57.0 9.7 41 604-644 91-132 (226)
277 PRK06731 flhF flagellar biosyn 95.2 0.25 5.4E-06 55.8 13.3 128 495-656 76-209 (270)
278 PRK12377 putative replication 95.2 0.16 3.4E-06 56.8 11.6 60 481-548 80-147 (248)
279 TIGR01074 rep ATP-dependent DN 95.2 0.11 2.4E-06 66.1 11.6 109 480-614 2-112 (664)
280 PRK10917 ATP-dependent DNA hel 95.1 0.075 1.6E-06 67.7 10.1 85 691-775 299-389 (681)
281 COG1484 DnaC DNA replication p 95.1 0.059 1.3E-06 60.4 8.1 72 472-551 76-154 (254)
282 COG1435 Tdk Thymidine kinase [ 95.1 0.16 3.5E-06 54.1 10.8 87 497-614 7-93 (201)
283 TIGR02640 gas_vesic_GvpN gas v 95.1 0.17 3.6E-06 56.9 11.7 30 485-514 12-41 (262)
284 KOG4207 Predicted splicing fac 95.1 0.18 3.9E-06 53.5 10.9 21 775-795 20-40 (256)
285 TIGR00362 DnaA chromosomal rep 95.1 0.083 1.8E-06 63.0 9.8 44 495-544 137-180 (405)
286 PRK14964 DNA polymerase III su 95.1 0.079 1.7E-06 64.5 9.6 40 601-641 114-153 (491)
287 PRK05707 DNA polymerase III su 95.1 0.12 2.5E-06 60.2 10.5 40 479-518 3-46 (328)
288 PRK14956 DNA polymerase III su 95.1 0.12 2.6E-06 62.6 10.8 40 602-643 120-159 (484)
289 TIGR02785 addA_Gpos recombinat 95.0 0.064 1.4E-06 72.6 9.5 123 480-614 2-126 (1232)
290 COG2256 MGS1 ATPase related to 95.0 0.094 2E-06 61.2 9.4 20 495-514 49-68 (436)
291 KOG0989 Replication factor C, 95.0 0.056 1.2E-06 61.0 7.4 47 600-647 126-172 (346)
292 PF13177 DNA_pol3_delta2: DNA 95.0 0.073 1.6E-06 55.4 8.0 42 602-644 101-142 (162)
293 PRK12727 flagellar biosynthesi 95.0 0.14 3.1E-06 62.5 11.3 26 493-518 349-374 (559)
294 PF05127 Helicase_RecD: Helica 95.0 0.0069 1.5E-07 63.9 0.2 123 498-644 1-123 (177)
295 PRK14949 DNA polymerase III su 95.0 0.093 2E-06 67.3 10.1 40 602-643 118-157 (944)
296 PF01695 IstB_IS21: IstB-like 95.0 0.025 5.5E-07 59.9 4.4 47 491-545 44-90 (178)
297 PF05876 Terminase_GpA: Phage 95.0 0.037 8E-07 68.7 6.4 125 479-616 16-147 (557)
298 PRK07994 DNA polymerase III su 94.9 0.21 4.5E-06 62.8 12.9 38 602-640 118-155 (647)
299 PF00308 Bac_DnaA: Bacterial d 94.9 0.035 7.7E-07 60.7 5.4 47 602-648 96-144 (219)
300 KOG0120 Splicing factor U2AF, 94.9 0.047 1E-06 65.7 6.8 20 1103-1122 160-179 (500)
301 KOG0738 AAA+-type ATPase [Post 94.9 0.13 2.8E-06 59.7 9.9 46 495-551 246-291 (491)
302 PHA03333 putative ATPase subun 94.9 0.3 6.5E-06 60.9 13.6 70 479-554 169-241 (752)
303 PRK14952 DNA polymerase III su 94.8 0.085 1.8E-06 65.6 9.1 40 601-641 116-155 (584)
304 TIGR01547 phage_term_2 phage t 94.8 0.13 2.8E-06 61.2 10.4 144 496-655 3-151 (396)
305 PRK09183 transposase/IS protei 94.8 0.11 2.3E-06 58.5 9.1 48 490-545 98-145 (259)
306 PRK08533 flagellar accessory p 94.8 0.2 4.4E-06 55.2 10.9 54 492-553 22-75 (230)
307 PHA03368 DNA packaging termina 94.7 0.17 3.6E-06 62.8 11.0 136 492-645 252-391 (738)
308 KOG1847 mRNA splicing factor [ 94.7 0.022 4.7E-07 68.4 3.3 13 778-790 517-529 (878)
309 TIGR03015 pepcterm_ATPase puta 94.7 0.65 1.4E-05 51.8 14.9 33 480-512 24-61 (269)
310 PRK11034 clpA ATP-dependent Cl 94.7 0.28 6E-06 63.0 13.2 23 494-516 207-229 (758)
311 PF06745 KaiC: KaiC; InterPro 94.6 0.15 3.3E-06 55.6 9.6 53 494-553 19-71 (226)
312 PRK14950 DNA polymerase III su 94.6 0.12 2.6E-06 64.6 9.8 41 601-643 118-158 (585)
313 TIGR01073 pcrA ATP-dependent D 94.6 0.12 2.6E-06 66.4 10.0 110 478-614 3-114 (726)
314 PRK06067 flagellar accessory p 94.6 0.52 1.1E-05 51.8 13.6 52 494-553 25-76 (234)
315 COG1444 Predicted P-loop ATPas 94.5 0.17 3.8E-06 63.8 10.7 140 480-644 215-356 (758)
316 PF00004 AAA: ATPase family as 94.5 0.11 2.4E-06 50.8 7.4 16 497-512 1-16 (132)
317 PRK00411 cdc6 cell division co 94.5 0.36 7.7E-06 57.2 12.9 19 495-513 56-74 (394)
318 PTZ00293 thymidine kinase; Pro 94.5 0.21 4.6E-06 54.3 9.9 37 495-538 5-41 (211)
319 TIGR00643 recG ATP-dependent D 94.5 0.11 2.3E-06 65.8 8.9 84 692-775 274-363 (630)
320 PF06495 Transformer: Fruit fl 94.4 0.18 3.8E-06 52.2 8.6 7 1067-1073 121-127 (182)
321 cd00984 DnaB_C DnaB helicase C 94.4 0.087 1.9E-06 57.9 7.1 39 493-537 12-50 (242)
322 TIGR03881 KaiC_arch_4 KaiC dom 94.4 0.29 6.3E-06 53.5 11.0 53 493-553 19-71 (229)
323 COG1474 CDC6 Cdc6-related prot 94.3 0.42 9.1E-06 56.4 12.8 30 601-631 121-150 (366)
324 TIGR01425 SRP54_euk signal rec 94.2 0.57 1.2E-05 56.3 13.7 129 497-655 103-235 (429)
325 PRK14959 DNA polymerase III su 94.2 0.24 5.2E-06 61.9 10.9 41 602-644 118-158 (624)
326 COG0470 HolB ATPase involved i 94.2 0.23 5E-06 56.8 10.1 40 602-642 108-147 (325)
327 TIGR02760 TraI_TIGR conjugativ 94.2 0.26 5.5E-06 69.5 12.2 65 478-545 1018-1084(1960)
328 cd00561 CobA_CobO_BtuR ATP:cor 94.2 0.32 6.9E-06 50.7 10.0 54 600-653 92-147 (159)
329 KOG2028 ATPase related to the 94.1 0.16 3.5E-06 58.3 8.3 50 495-551 163-212 (554)
330 PF05621 TniB: Bacterial TniB 94.1 0.2 4.4E-06 57.0 9.1 80 467-551 26-118 (302)
331 PRK14088 dnaA chromosomal repl 94.1 0.12 2.6E-06 62.5 7.8 51 603-653 194-246 (440)
332 cd03115 SRP The signal recogni 94.0 0.8 1.7E-05 47.7 12.9 54 602-655 81-135 (173)
333 PRK14961 DNA polymerase III su 94.0 0.21 4.6E-06 58.8 9.5 39 602-641 118-156 (363)
334 PRK14087 dnaA chromosomal repl 94.0 0.2 4.4E-06 60.7 9.5 110 495-648 142-253 (450)
335 PRK12726 flagellar biosynthesi 93.9 0.36 7.8E-06 56.9 11.0 127 495-654 207-338 (407)
336 TIGR02639 ClpA ATP-dependent C 93.9 0.91 2E-05 58.5 15.8 23 495-517 204-226 (731)
337 PF13173 AAA_14: AAA domain 93.9 0.28 6E-06 48.8 8.9 37 603-643 61-97 (128)
338 PRK06995 flhF flagellar biosyn 93.8 0.37 8.1E-06 58.6 11.3 24 495-518 257-280 (484)
339 COG1219 ClpX ATP-dependent pro 93.8 0.088 1.9E-06 59.7 5.5 23 492-514 95-117 (408)
340 KOG0745 Putative ATP-dependent 93.8 0.069 1.5E-06 62.6 4.8 22 493-514 225-246 (564)
341 PLN03025 replication factor C 93.8 0.5 1.1E-05 54.6 11.9 40 602-643 98-137 (319)
342 PRK04328 hypothetical protein; 93.8 0.48 1E-05 52.9 11.3 53 494-554 23-75 (249)
343 PRK13342 recombination factor 93.8 0.29 6.4E-06 58.7 10.3 19 495-513 37-55 (413)
344 PRK08903 DnaA regulatory inact 93.8 0.38 8.2E-06 52.5 10.4 42 603-645 90-132 (227)
345 KOG1133 Helicase of the DEAD s 93.7 1.2 2.6E-05 55.2 15.1 102 703-807 630-779 (821)
346 PHA02544 44 clamp loader, smal 93.7 0.22 4.7E-06 57.2 8.8 39 603-641 100-138 (316)
347 PRK11823 DNA repair protein Ra 93.7 0.25 5.5E-06 59.8 9.7 59 487-553 68-131 (446)
348 KOG0107 Alternative splicing f 93.7 0.31 6.7E-06 50.8 8.7 10 809-818 56-65 (195)
349 PRK05986 cob(I)alamin adenolsy 93.7 0.26 5.7E-06 52.7 8.6 145 493-653 21-167 (191)
350 COG0593 DnaA ATPase involved i 93.7 0.15 3.3E-06 60.4 7.5 47 603-649 175-223 (408)
351 TIGR00064 ftsY signal recognit 93.7 0.49 1.1E-05 53.6 11.4 131 496-656 74-214 (272)
352 PRK12402 replication factor C 93.7 0.34 7.4E-06 55.9 10.4 40 602-643 124-163 (337)
353 TIGR02881 spore_V_K stage V sp 93.7 0.19 4.2E-06 56.3 8.0 20 495-514 43-62 (261)
354 TIGR00580 mfd transcription-re 93.6 0.22 4.7E-06 65.3 9.4 84 692-775 490-579 (926)
355 PRK14957 DNA polymerase III su 93.6 0.28 6E-06 60.7 9.8 40 601-641 117-156 (546)
356 PRK05580 primosome assembly pr 93.6 0.3 6.5E-06 62.2 10.5 80 697-777 185-266 (679)
357 PRK08939 primosomal protein Dn 93.5 0.4 8.6E-06 55.3 10.4 46 494-547 156-201 (306)
358 PRK10867 signal recognition pa 93.5 0.4 8.7E-06 57.7 10.8 24 497-520 103-126 (433)
359 PRK14954 DNA polymerase III su 93.4 0.26 5.6E-06 61.9 9.3 53 601-658 125-177 (620)
360 PHA00729 NTP-binding motif con 93.4 0.56 1.2E-05 51.6 10.6 75 581-655 60-139 (226)
361 TIGR00595 priA primosomal prot 93.3 0.36 7.9E-06 59.4 10.2 80 697-777 20-101 (505)
362 TIGR00708 cobA cob(I)alamin ad 93.2 0.9 1.9E-05 48.0 11.6 54 600-653 94-149 (173)
363 KOG0298 DEAD box-containing he 93.2 0.079 1.7E-06 68.7 4.3 102 700-805 1219-1321(1394)
364 PRK13341 recombination factor 93.2 0.63 1.4E-05 59.6 12.3 48 603-655 109-156 (725)
365 TIGR03346 chaperone_ClpB ATP-d 93.1 0.87 1.9E-05 59.7 13.9 21 495-515 195-215 (852)
366 KOG0991 Replication factor C, 93.1 0.25 5.4E-06 53.9 7.3 41 602-643 112-152 (333)
367 TIGR02928 orc1/cdc6 family rep 93.1 0.67 1.5E-05 54.2 11.7 19 495-513 41-59 (365)
368 cd01121 Sms Sms (bacterial rad 93.1 0.47 1E-05 56.2 10.3 52 494-553 82-133 (372)
369 PRK06964 DNA polymerase III su 93.1 0.48 1E-05 55.4 10.2 42 601-643 130-171 (342)
370 PRK12724 flagellar biosynthesi 93.0 0.72 1.6E-05 55.2 11.6 124 497-655 226-356 (432)
371 COG2812 DnaX DNA polymerase II 92.9 0.057 1.2E-06 65.7 2.5 40 601-643 117-156 (515)
372 PF05496 RuvB_N: Holliday junc 92.9 0.21 4.5E-06 54.8 6.4 19 495-513 51-69 (233)
373 KOG0151 Predicted splicing reg 92.9 0.087 1.9E-06 64.3 3.8 24 529-552 307-330 (877)
374 TIGR03345 VI_ClpV1 type VI sec 92.8 1.5 3.2E-05 57.4 15.3 20 495-514 209-228 (852)
375 PRK14873 primosome assembly pr 92.8 0.48 1E-05 60.0 10.5 91 687-778 172-266 (665)
376 KOG0113 U1 small nuclear ribon 92.8 0.49 1.1E-05 53.0 9.1 9 798-806 143-151 (335)
377 PRK10865 protein disaggregatio 92.8 0.97 2.1E-05 59.2 13.5 22 495-516 200-221 (857)
378 PRK14969 DNA polymerase III su 92.7 0.71 1.5E-05 57.1 11.6 40 601-641 117-156 (527)
379 PRK06871 DNA polymerase III su 92.7 0.59 1.3E-05 54.3 10.2 42 601-643 105-146 (325)
380 KOG0780 Signal recognition par 92.7 1 2.3E-05 52.5 11.8 152 476-655 68-236 (483)
381 KOG0742 AAA+-type ATPase [Post 92.6 0.21 4.6E-06 58.1 6.2 16 495-510 385-400 (630)
382 CHL00095 clpC Clp protease ATP 92.6 0.77 1.7E-05 59.9 12.2 23 495-517 201-223 (821)
383 PRK05563 DNA polymerase III su 92.5 0.61 1.3E-05 58.1 10.7 41 601-643 117-157 (559)
384 PRK07993 DNA polymerase III su 92.4 0.53 1.2E-05 54.9 9.5 42 601-643 106-147 (334)
385 PRK07940 DNA polymerase III su 92.4 0.68 1.5E-05 55.2 10.5 41 601-643 115-155 (394)
386 COG3973 Superfamily I DNA and 92.4 0.52 1.1E-05 57.6 9.4 72 482-555 215-286 (747)
387 PRK05973 replicative DNA helic 92.3 0.61 1.3E-05 51.8 9.3 54 492-553 62-115 (237)
388 PRK09112 DNA polymerase III su 92.2 0.43 9.4E-06 56.0 8.4 41 601-642 139-179 (351)
389 COG3972 Superfamily I DNA and 92.2 0.46 1E-05 56.7 8.4 145 478-633 161-320 (660)
390 PRK14963 DNA polymerase III su 92.2 0.34 7.3E-06 59.6 7.8 20 497-516 39-58 (504)
391 COG1200 RecG RecG-like helicas 92.0 0.56 1.2E-05 58.3 9.3 86 690-775 299-390 (677)
392 PRK07471 DNA polymerase III su 92.0 0.74 1.6E-05 54.4 10.0 42 601-643 139-180 (365)
393 PRK14962 DNA polymerase III su 91.9 0.22 4.8E-06 60.6 5.8 19 497-515 39-57 (472)
394 PRK14955 DNA polymerase III su 91.9 0.94 2E-05 54.1 10.9 41 601-643 125-165 (397)
395 PRK14721 flhF flagellar biosyn 91.8 0.58 1.3E-05 56.1 9.0 131 494-655 191-323 (420)
396 PF03796 DnaB_C: DnaB-like hel 91.8 1.1 2.4E-05 50.0 10.9 113 494-618 19-145 (259)
397 TIGR00959 ffh signal recogniti 91.8 1 2.2E-05 54.2 11.0 22 497-518 102-123 (428)
398 KOG0741 AAA+-type ATPase [Post 91.7 1.2 2.5E-05 53.9 11.1 34 496-538 540-573 (744)
399 PRK10689 transcription-repair 91.7 0.54 1.2E-05 63.1 9.5 80 696-775 643-728 (1147)
400 PF05729 NACHT: NACHT domain 91.7 2.6 5.6E-05 42.7 12.6 23 496-518 2-24 (166)
401 TIGR00678 holB DNA polymerase 91.7 2 4.4E-05 45.5 12.1 39 601-640 94-132 (188)
402 PRK04195 replication factor C 91.6 0.93 2E-05 55.5 10.8 19 494-512 39-57 (482)
403 PRK07413 hypothetical protein; 91.6 4.4 9.6E-05 47.9 15.7 112 599-711 121-245 (382)
404 CHL00181 cbbX CbbX; Provisiona 91.6 1.2 2.6E-05 50.9 10.8 23 494-516 59-81 (287)
405 PF03969 AFG1_ATPase: AFG1-lik 91.5 7.6 0.00016 45.9 17.7 45 603-648 127-172 (362)
406 TIGR03880 KaiC_arch_3 KaiC dom 91.4 0.94 2E-05 49.4 9.6 52 494-553 16-67 (224)
407 PRK08699 DNA polymerase III su 91.4 0.93 2E-05 52.7 9.9 39 480-518 2-45 (325)
408 TIGR03878 thermo_KaiC_2 KaiC d 91.4 0.93 2E-05 50.9 9.6 37 494-537 36-72 (259)
409 KOG0734 AAA+-type ATPase conta 91.3 0.95 2.1E-05 54.6 9.8 41 603-643 396-446 (752)
410 PRK06904 replicative DNA helic 91.3 2 4.4E-05 52.5 13.2 115 494-617 221-348 (472)
411 PRK06090 DNA polymerase III su 91.3 0.88 1.9E-05 52.7 9.5 42 601-643 106-147 (319)
412 PRK06305 DNA polymerase III su 91.2 0.7 1.5E-05 56.1 9.0 39 602-641 120-158 (451)
413 KOG3598 Thyroid hormone recept 91.2 0.094 2E-06 67.9 1.6 71 79-157 2000-2078(2220)
414 KOG0740 AAA+-type ATPase [Post 91.2 0.6 1.3E-05 55.7 8.1 42 495-547 187-228 (428)
415 PRK14948 DNA polymerase III su 91.1 0.9 2E-05 57.3 10.1 40 602-643 120-159 (620)
416 PF02572 CobA_CobO_BtuR: ATP:c 91.1 2.5 5.5E-05 44.7 11.9 139 497-653 6-148 (172)
417 PRK08451 DNA polymerase III su 91.0 0.78 1.7E-05 56.6 9.2 40 601-641 115-154 (535)
418 KOG0739 AAA+-type ATPase [Post 91.0 3 6.4E-05 47.3 12.6 111 489-649 156-282 (439)
419 PRK00440 rfc replication facto 91.0 3.3 7.1E-05 47.3 13.9 38 603-641 102-139 (319)
420 TIGR02880 cbbX_cfxQ probable R 90.9 1.1 2.3E-05 51.2 9.7 21 494-514 58-78 (284)
421 KOG0701 dsRNA-specific nucleas 90.8 0.3 6.5E-06 66.0 5.8 93 704-796 294-399 (1606)
422 cd01125 repA Hexameric Replica 90.7 2.1 4.5E-05 47.3 11.4 42 496-537 3-49 (239)
423 PF05707 Zot: Zonular occluden 90.6 0.71 1.5E-05 49.4 7.4 51 603-654 79-135 (193)
424 COG1197 Mfd Transcription-repa 90.6 0.9 2E-05 59.6 9.5 86 690-775 631-722 (1139)
425 PF00265 TK: Thymidine kinase; 90.5 0.76 1.6E-05 48.7 7.4 35 497-538 4-38 (176)
426 PHA00350 putative assembly pro 90.5 1.3 2.9E-05 52.6 10.1 24 497-520 4-28 (399)
427 KOG4274 Positive cofactor 2 (P 90.4 0.43 9.2E-06 57.2 5.9 26 201-226 279-304 (742)
428 PHA00012 I assembly protein 90.4 3.1 6.8E-05 48.1 12.5 24 497-520 4-27 (361)
429 TIGR03600 phage_DnaB phage rep 90.4 1.9 4.2E-05 51.8 11.8 38 494-537 194-231 (421)
430 KOG1513 Nuclear helicase MOP-3 90.4 0.35 7.6E-06 60.1 5.3 80 744-823 850-941 (1300)
431 COG0552 FtsY Signal recognitio 90.2 3.6 7.8E-05 47.6 12.9 132 497-655 142-280 (340)
432 PRK14971 DNA polymerase III su 90.1 1.7 3.6E-05 54.9 11.2 41 601-643 119-159 (614)
433 COG4626 Phage terminase-like p 90.1 1.3 2.8E-05 54.2 9.7 74 478-554 60-143 (546)
434 cd01394 radB RadB. The archaea 90.1 1.6 3.5E-05 47.2 9.8 43 487-536 7-54 (218)
435 COG2909 MalT ATP-dependent tra 90.0 1.3 2.9E-05 56.3 10.0 41 604-644 130-170 (894)
436 PF03237 Terminase_6: Terminas 90.0 3.4 7.3E-05 47.6 13.0 149 498-659 1-154 (384)
437 COG0541 Ffh Signal recognition 89.9 1.6 3.4E-05 52.0 9.9 132 497-656 103-236 (451)
438 PF07728 AAA_5: AAA domain (dy 89.7 0.093 2E-06 52.6 -0.2 17 496-512 1-17 (139)
439 TIGR02237 recomb_radB DNA repa 89.7 1.6 3.5E-05 46.9 9.3 38 494-538 12-49 (209)
440 PRK05896 DNA polymerase III su 89.5 1.1 2.4E-05 55.8 8.9 39 602-641 118-156 (605)
441 TIGR03499 FlhF flagellar biosy 89.5 0.44 9.5E-06 54.2 5.0 25 495-519 195-219 (282)
442 TIGR02655 circ_KaiC circadian 89.4 2.1 4.5E-05 52.6 11.1 53 493-553 262-314 (484)
443 TIGR02012 tigrfam_recA protein 89.4 1.6 3.4E-05 50.7 9.5 42 495-543 56-97 (321)
444 PRK07399 DNA polymerase III su 89.2 1.5 3.3E-05 50.7 9.2 52 588-642 110-161 (314)
445 PRK09354 recA recombinase A; P 89.2 1.9 4.1E-05 50.5 9.9 50 487-543 47-102 (349)
446 PF06733 DEAD_2: DEAD_2; Inte 89.2 0.3 6.5E-06 51.3 3.1 45 573-617 113-159 (174)
447 PRK08840 replicative DNA helic 89.2 3.2 7E-05 50.6 12.3 115 493-616 216-342 (464)
448 TIGR03689 pup_AAA proteasome A 88.9 1.7 3.6E-05 53.6 9.6 20 494-513 216-235 (512)
449 TIGR00763 lon ATP-dependent pr 88.9 3.7 8.1E-05 53.3 13.4 20 494-513 347-366 (775)
450 TIGR00416 sms DNA repair prote 88.8 1.3 2.9E-05 53.8 8.7 52 494-553 94-145 (454)
451 PRK04841 transcriptional regul 88.7 2.6 5.7E-05 55.4 12.1 42 604-645 122-163 (903)
452 PRK09361 radB DNA repair and r 88.7 2 4.3E-05 46.9 9.3 44 488-538 12-60 (225)
453 COG2109 BtuR ATP:corrinoid ade 88.6 4.1 8.8E-05 43.6 10.9 54 601-654 120-175 (198)
454 COG2255 RuvB Holliday junction 88.6 1.2 2.7E-05 50.2 7.4 19 495-513 53-71 (332)
455 cd01393 recA_like RecA is a b 88.5 1.8 3.9E-05 47.0 8.8 44 494-538 19-62 (226)
456 PF04665 Pox_A32: Poxvirus A32 88.4 2.6 5.6E-05 47.0 9.8 40 491-537 9-49 (241)
457 cd00983 recA RecA is a bacter 88.4 0.99 2.1E-05 52.4 6.9 50 487-543 42-97 (325)
458 COG2874 FlaH Predicted ATPases 88.4 8.9 0.00019 41.9 13.4 136 495-655 29-181 (235)
459 PF01443 Viral_helicase1: Vira 88.4 0.47 1E-05 51.6 4.1 14 497-510 1-14 (234)
460 TIGR00665 DnaB replicative DNA 88.3 2.2 4.8E-05 51.4 10.2 112 494-616 195-318 (434)
461 PRK06647 DNA polymerase III su 88.2 2.8 6.1E-05 52.3 11.2 41 601-643 117-157 (563)
462 PRK10416 signal recognition pa 88.2 4.9 0.00011 46.7 12.4 54 602-655 195-255 (318)
463 KOG1891 Proline binding protei 88.2 0.39 8.3E-06 51.5 3.1 38 20-58 127-164 (271)
464 KOG0796 Spliceosome subunit [R 88.1 0.26 5.7E-06 55.8 1.9 10 606-615 58-67 (319)
465 PRK08506 replicative DNA helic 88.1 2.2 4.7E-05 52.2 9.9 111 495-616 193-315 (472)
466 PRK07004 replicative DNA helic 87.9 2.2 4.9E-05 51.9 9.9 113 494-616 213-337 (460)
467 TIGR00767 rho transcription te 87.8 2.3 5E-05 50.6 9.5 21 492-512 166-186 (415)
468 COG1222 RPT1 ATP-dependent 26S 87.7 2.4 5.1E-05 49.4 9.1 17 495-511 186-202 (406)
469 PRK05748 replicative DNA helic 87.6 2.7 5.8E-05 51.0 10.4 111 495-616 204-327 (448)
470 COG1110 Reverse gyrase [DNA re 87.6 1.3 2.8E-05 57.1 7.6 61 701-761 124-191 (1187)
471 PRK07133 DNA polymerase III su 87.5 2.9 6.4E-05 53.3 10.8 40 601-641 116-155 (725)
472 PRK06620 hypothetical protein; 87.5 1.3 2.8E-05 48.4 6.8 106 530-645 15-123 (214)
473 PRK10263 DNA translocase FtsK; 87.5 5.6 0.00012 53.4 13.4 41 495-538 1011-1051(1355)
474 TIGR02397 dnaX_nterm DNA polym 87.2 2.3 4.9E-05 49.5 9.1 38 601-639 115-152 (355)
475 cd03239 ABC_SMC_head The struc 87.1 0.76 1.6E-05 48.7 4.6 42 602-643 115-157 (178)
476 PRK08760 replicative DNA helic 87.1 2.7 5.9E-05 51.5 9.9 141 491-641 226-386 (476)
477 PRK13894 conjugal transfer ATP 87.0 1.5 3.2E-05 51.0 7.3 66 469-541 124-190 (319)
478 COG0513 SrmB Superfamily II DN 86.8 5.8 0.00012 49.1 12.7 123 689-820 81-226 (513)
479 COG0464 SpoVK ATPases of the A 86.8 4.1 8.9E-05 50.0 11.5 170 495-721 277-457 (494)
480 PRK08058 DNA polymerase III su 86.8 3.4 7.4E-05 48.1 10.2 128 484-655 11-161 (329)
481 KOG0741 AAA+-type ATPase [Post 86.7 4.1 8.9E-05 49.5 10.6 134 495-682 257-412 (744)
482 KOG2543 Origin recognition com 86.7 5.7 0.00012 46.7 11.5 142 481-648 11-162 (438)
483 PRK08006 replicative DNA helic 86.6 6.4 0.00014 48.2 12.8 157 476-641 206-383 (471)
484 KOG0132 RNA polymerase II C-te 86.6 4 8.7E-05 51.1 10.7 137 869-1005 689-832 (894)
485 TIGR00602 rad24 checkpoint pro 86.6 2.6 5.7E-05 53.2 9.6 114 497-643 113-236 (637)
486 TIGR00635 ruvB Holliday juncti 86.6 1.2 2.5E-05 50.9 6.1 86 495-642 31-116 (305)
487 PRK13833 conjugal transfer pro 86.5 1.9 4.1E-05 50.1 7.8 66 469-541 120-186 (323)
488 PRK04537 ATP-dependent RNA hel 86.5 74 0.0016 40.1 22.3 267 703-971 233-522 (572)
489 PRK05636 replicative DNA helic 86.4 3.4 7.3E-05 51.0 10.3 139 491-641 262-422 (505)
490 KOG2170 ATPase of the AAA+ sup 86.3 6.8 0.00015 44.7 11.6 207 483-740 90-340 (344)
491 KOG0344 ATP-dependent RNA heli 86.2 4.8 0.0001 49.3 11.0 114 485-612 336-465 (593)
492 COG0210 UvrD Superfamily I DNA 86.1 2.5 5.4E-05 53.8 9.3 112 478-616 1-117 (655)
493 PRK07414 cob(I)yrinic acid a,c 85.9 4.3 9.2E-05 43.2 9.3 139 497-652 24-166 (178)
494 COG4962 CpaF Flp pilus assembl 85.8 2.2 4.8E-05 49.5 7.7 84 445-541 128-212 (355)
495 cd01128 rho_factor Transcripti 85.5 2.2 4.7E-05 47.8 7.4 103 491-615 13-115 (249)
496 PRK09376 rho transcription ter 85.5 4.5 9.7E-05 48.1 10.1 102 493-616 168-269 (416)
497 KOG0796 Spliceosome subunit [R 85.2 0.45 9.8E-06 54.0 1.8 78 960-1042 242-319 (319)
498 PRK06321 replicative DNA helic 85.1 5.6 0.00012 48.7 11.2 135 497-641 229-386 (472)
499 TIGR02782 TrbB_P P-type conjug 85.1 3.1 6.6E-05 47.9 8.5 66 469-541 108-174 (299)
500 PF13481 AAA_25: AAA domain; P 85.1 2.3 4.9E-05 44.9 7.0 115 493-617 31-155 (193)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-66 Score=600.51 Aligned_cols=381 Identities=59% Similarity=0.986 Sum_probs=363.0
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHH--hcCCCCCCCEEEEE
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ--LHNNPRNGPTVLVL 535 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~--~~~~~~~g~kvLVL 535 (1134)
.+.++.+..+....++..||.+|||||+++|+.+++|+|+|.+|.|||||||+|++|++.+|.. .......+|.+|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 5666778888999999999999999999999999999999999999999999999999998874 33345678999999
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhh
Q 047890 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 536 vPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrl 615 (1134)
+||||||.|+.+++.+++....++++|++||..+..+++.+.++++|+|+||++|+++++...+.+.++.++|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHhC-CCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHH
Q 047890 616 LDMGFEPQIRKIVNEM-PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQ 694 (1134)
Q Consensus 616 l~~gf~~~i~~IL~~l-~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ 694 (1134)
++++|++++++|+..+ ++.+|+|++|||||.+++.++..++.+++.+.+...+++.....+.+.++++....|...|..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 666689999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcce
Q 047890 695 ILRAQE--RGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771 (1134)
Q Consensus 695 llk~~~--~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~ 771 (1134)
+|.... .+.||||||+|++.|++|+..|.+ .+.+..|||++++.+|+.+|+.|++|++.||||||++++||||++|+
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 999886 567999999999999999999987 48999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhhc
Q 047890 772 VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRC 838 (1134)
Q Consensus 772 ~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r~ 838 (1134)
+|||||+|.+.++|+||+||+||+|++|.+++|++..+...+..++++|+++++.+++.+..++...
T Consensus 412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999998763
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.6e-57 Score=548.82 Aligned_cols=379 Identities=53% Similarity=0.869 Sum_probs=342.1
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhc-CCCCCCCEEEEEc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLH-NNPRNGPTVLVLA 536 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~-~~~~~g~kvLVLv 536 (1134)
.+.++.+...+++.|.+.||++||++|.++|+.+++++|+|++|+||||||++|++|++..+.... .....++.+|||+
T Consensus 131 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~ 210 (545)
T PTZ00110 131 SFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLA 210 (545)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEEC
Confidence 344445666779999999999999999999999999999999999999999999999987765322 1223578999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
||+|||.|+.+++++|+....+.+.+++++.....+...+..+++|||+||++|++++....+.+.++++|||||||+|+
T Consensus 211 PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~ml 290 (545)
T PTZ00110 211 PTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRML 290 (545)
T ss_pred ChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhh
Confidence 99999999999999999888899999999998888888888899999999999999999888889999999999999999
Q ss_pred ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhcc-CCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHH
Q 047890 617 DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQI 695 (1134)
Q Consensus 617 ~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~-~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~l 695 (1134)
+++|...+.+|+..+.+.+|+|++|||++.+++.+++.++. +++.+.+...+ +.....+.+.+.++...+|...|..+
T Consensus 291 d~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~~~~~~~k~~~L~~l 369 (545)
T PTZ00110 291 DMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVEEHEKRGKLKML 369 (545)
T ss_pred hcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEEEEechhHHHHHHHH
Confidence 99999999999999999999999999999999999988875 46666665443 33445667777777778888888888
Q ss_pred HHHHh-cCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEE
Q 047890 696 LRAQE-RGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVV 773 (1134)
Q Consensus 696 lk~~~-~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~V 773 (1134)
++.+. ...++||||++++.|+.|++.|. .++.+..+||++++++|+++++.|++|+++|||||+++++||||++|++|
T Consensus 370 l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~V 449 (545)
T PTZ00110 370 LQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYV 449 (545)
T ss_pred HHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEE
Confidence 88765 67899999999999999999996 46889999999999999999999999999999999999999999999999
Q ss_pred EeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhh
Q 047890 774 INYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALR 837 (1134)
Q Consensus 774 I~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r 837 (1134)
|+||+|.+.++|+||+||+||+|++|.|++|++..+...+.++++.|++..+++++++.+++..
T Consensus 450 I~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~ 513 (545)
T PTZ00110 450 INFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNE 513 (545)
T ss_pred EEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999876
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-58 Score=504.12 Aligned_cols=370 Identities=38% Similarity=0.582 Sum_probs=343.8
Q ss_pred CChhHhhhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 047890 450 LSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNG 529 (1134)
Q Consensus 450 ~~p~e~~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g 529 (1134)
....+.+.+|.++.+...+++++...+|+.||++|+++||.++.++|||+.|+||||||.+|++|++..|... +..
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~----p~~ 129 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE----PKL 129 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC----CCC
Confidence 3446677888999999999999999999999999999999999999999999999999999999999987752 355
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHH-hcccCCCCeEEEE
Q 047890 530 PTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE-MKKIDFGQVSLLV 608 (1134)
Q Consensus 530 ~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~-~~~l~l~~l~lVV 608 (1134)
+.+|||+||||||.||.+.++.++...++.++++.||.+...+...+.+.++|||+||++|.++++ .+.+.+..++++|
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 899999999999999999999999999999999999999999989999999999999999999998 6778999999999
Q ss_pred EcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHH
Q 047890 609 LDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEK 688 (1134)
Q Consensus 609 IDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek 688 (1134)
+||||+++++.|.+.+..||..++..+|++++|||++..+.++....+.++..+.+...... ...+.+++..++...|
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~t--v~~lkQ~ylfv~~k~K 287 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQT--VDHLKQTYLFVPGKDK 287 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcc--hHHhhhheEecccccc
Confidence 99999999999999999999999999999999999999999999999999998887665543 3457888899999999
Q ss_pred HHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceecccc
Q 047890 689 ERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767 (1134)
Q Consensus 689 ~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDI 767 (1134)
...|..++++.. +..+||||++...+++++-.|.. ++.+..|||.|++..|.-.++.|+++.+.||||||++++||||
T Consensus 288 ~~yLV~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi 366 (476)
T KOG0330|consen 288 DTYLVYLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDI 366 (476)
T ss_pred chhHHHHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCC
Confidence 999999998754 58999999999999999999865 7889999999999999999999999999999999999999999
Q ss_pred CcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCC
Q 047890 768 KDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQH 826 (1134)
Q Consensus 768 p~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~ 826 (1134)
+.|++|||||.|.+..+|+||+||++|+|.+|+++.+++..|.+.+.+|...+.+....
T Consensus 367 p~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 367 PHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred CCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999988888888777654
No 4
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-58 Score=504.25 Aligned_cols=370 Identities=46% Similarity=0.816 Sum_probs=345.2
Q ss_pred hHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcC--CCCCCCEEEEEcccHHHHHH
Q 047890 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN--NPRNGPTVLVLAPTRELATQ 544 (1134)
Q Consensus 467 ~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~--~~~~g~kvLVLvPTreLa~Q 544 (1134)
+++++|.+.||.+|||+|.+|||.+|.|.|+|.+|.||+|||++||+|.+.++...+. ....++.+||++||++|+.|
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalq 309 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQ 309 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHH
Confidence 3488999999999999999999999999999999999999999999998766543221 23467899999999999999
Q ss_pred HHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHH
Q 047890 545 IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQI 624 (1134)
Q Consensus 545 ~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i 624 (1134)
+.-++.++. ..++..+|++|+.+..+++..+.++++|||+||++|.++...+.+++..+.+|||||||+|++++|+++|
T Consensus 310 ie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqI 388 (629)
T KOG0336|consen 310 IEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQI 388 (629)
T ss_pred HHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHH
Confidence 999998875 4478889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCE
Q 047890 625 RKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR 704 (1134)
Q Consensus 625 ~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~k 704 (1134)
++||-.+.+++|+++.|||||+.|+.++..+++++..+.++.++ +.....+.+.+.+..+.+|...+..+++......|
T Consensus 389 rkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd-L~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndK 467 (629)
T KOG0336|consen 389 RKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD-LVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDK 467 (629)
T ss_pred HHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccc-eeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCce
Confidence 99999999999999999999999999999999999999998876 45556788888888889999999999999999999
Q ss_pred EEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChh
Q 047890 705 VIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVE 783 (1134)
Q Consensus 705 vLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~ 783 (1134)
+||||..+..|+.|...|. .++....|||+..+.+|+..++.|++|+++||||||++++|||++++++|+|||+|.+++
T Consensus 468 vIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIe 547 (629)
T KOG0336|consen 468 VIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIE 547 (629)
T ss_pred EEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHH
Confidence 9999999999999988774 578889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhhc
Q 047890 784 DYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRC 838 (1134)
Q Consensus 784 ~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r~ 838 (1134)
+|+||+||+||+|++|+++.|+..+|...+..|+++|+++.+++|++|..||.+.
T Consensus 548 eYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAery 602 (629)
T KOG0336|consen 548 EYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERY 602 (629)
T ss_pred HHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999873
No 5
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9e-56 Score=527.51 Aligned_cols=362 Identities=40% Similarity=0.679 Sum_probs=319.0
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCC--CCCCCEEEEEc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN--PRNGPTVLVLA 536 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~--~~~g~kvLVLv 536 (1134)
|.++.+...+++.|.+.||.+||++|.++|+.++.++|+|++|+||+|||++|++|++..+...... .....++|||+
T Consensus 3 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~ 82 (456)
T PRK10590 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT 82 (456)
T ss_pred HHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEe
Confidence 4456678889999999999999999999999999999999999999999999999999887643221 12345899999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
||++||.|++++++++....++.+..++|+.....+...+...++|||+||++|++++....+.+.++++|||||||+|+
T Consensus 83 PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll 162 (456)
T PRK10590 83 PTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML 162 (456)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHh
Confidence 99999999999999998888899999999998888777888889999999999999998888889999999999999999
Q ss_pred ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHH
Q 047890 617 DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL 696 (1134)
Q Consensus 617 ~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ll 696 (1134)
+++|...+..++..++...|+|++|||++.++..++..++.++..+.+.... .....+.+++..+....+...|..++
T Consensus 163 ~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 163 DMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN--TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred ccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888777654332 23344666777777777777777666
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN 775 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~ 775 (1134)
.. ....++||||+++..++.|++.|.. ++.+..+|++++.++|.++++.|++|+++|||||+++++||||++|++||+
T Consensus 241 ~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred Hc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 54 2346899999999999999999954 688999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhh
Q 047890 776 YDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGA 823 (1134)
Q Consensus 776 ~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~ 823 (1134)
|++|.+.++|+||+||+||+|.+|.|++|+...|...+.++.+.+...
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred eCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998888777777666543
No 6
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-57 Score=504.89 Aligned_cols=374 Identities=47% Similarity=0.765 Sum_probs=345.3
Q ss_pred cccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCC-CCCCCEEEEEcccHH
Q 047890 462 VSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN-PRNGPTVLVLAPTRE 540 (1134)
Q Consensus 462 v~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~-~~~g~kvLVLvPTre 540 (1134)
...+..++.++.+..|.+|||+|+++||..+.++++|-+|.||||||.+|+.|++.++...++- +..+|..||||||+|
T Consensus 228 ~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTre 307 (731)
T KOG0339|consen 228 FGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRE 307 (731)
T ss_pred cCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHH
Confidence 3345566888999999999999999999999999999999999999999999999887654443 368999999999999
Q ss_pred HHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCc
Q 047890 541 LATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGF 620 (1134)
Q Consensus 541 La~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf 620 (1134)
||.|++.++++|++..++++++++||.+..++...|..++.||||||++|+++++.+.+++.++.+||||||++|++++|
T Consensus 308 la~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGf 387 (731)
T KOG0339|consen 308 LASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGF 387 (731)
T ss_pred HHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhH-HHHHHHHHHHHH
Q 047890 621 EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQME-KERRLQQILRAQ 699 (1134)
Q Consensus 621 ~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~e-k~~~L~~llk~~ 699 (1134)
+++++.|...+.+++|+|+||||+...++.+++.+|.+++.+....+. ..+..|.+.+.++...+ |...|..-|-..
T Consensus 388 e~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg--ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f 465 (731)
T KOG0339|consen 388 EPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG--EANEDITQTVSVCPSEEKKLNWLLRHLVEF 465 (731)
T ss_pred HHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh--ccccchhheeeeccCcHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999988776444 45667888888876654 445555555555
Q ss_pred hcCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecC
Q 047890 700 ERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDF 778 (1134)
Q Consensus 700 ~~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~ 778 (1134)
....++|||+..+..+++|+..|+ +++.|..+||+|.+.+|.++|.+|+.+++.|||+||++++|+||+.+..||+||+
T Consensus 466 ~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ 545 (731)
T KOG0339|consen 466 SSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDF 545 (731)
T ss_pred ccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccc
Confidence 566899999999999999999885 5799999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhh
Q 047890 779 PNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALR 837 (1134)
Q Consensus 779 P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r 837 (1134)
-.+++.|.|||||+||+|.+|++++|+++.|.+++-.|++.|+.+.+.+|+++.+|+..
T Consensus 546 ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk 604 (731)
T KOG0339|consen 546 ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMK 604 (731)
T ss_pred cchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999987
No 7
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-54 Score=528.30 Aligned_cols=362 Identities=38% Similarity=0.597 Sum_probs=314.0
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcC---CCCCCCEEEEE
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN---NPRNGPTVLVL 535 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~---~~~~g~kvLVL 535 (1134)
|.++.+...+++.|.+.||.+||++|+++|+.+++++|+|++|+||||||++|++|++..+..... .....+++|||
T Consensus 11 f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl 90 (572)
T PRK04537 11 FSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALIL 90 (572)
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEE
Confidence 445667788899999999999999999999999999999999999999999999999987753211 11235799999
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc-ccCCCCeEEEEEcchhh
Q 047890 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK-KIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 536 vPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~-~l~l~~l~lVVIDEAHr 614 (1134)
+||++|+.|+++.+.+|+...++.+..++|+.....+...+...++|||+||++|++++... .+.+..+++|||||||+
T Consensus 91 ~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~ 170 (572)
T PRK04537 91 APTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR 170 (572)
T ss_pred eCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH
Confidence 99999999999999999998899999999999888777777788999999999999998765 46788999999999999
Q ss_pred hhccCchHHHHHHHHhCCC--CceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHH
Q 047890 615 MLDMGFEPQIRKIVNEMPP--HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRL 692 (1134)
Q Consensus 615 ll~~gf~~~i~~IL~~l~~--~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L 692 (1134)
|++++|...+..++..++. .+|+|+||||++..+.+++..++.++..+.+.... .....+.+.+......++...|
T Consensus 171 lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET--ITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc--ccccceeEEEEecCHHHHHHHH
Confidence 9999999999999998876 67999999999999999998888877665543322 2233455666666666677777
Q ss_pred HHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcce
Q 047890 693 QQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771 (1134)
Q Consensus 693 ~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~ 771 (1134)
..+++. ..+.++||||+|++.++.|++.|.. ++.+..+|++|+..+|.++++.|++|+++|||||+++++||||++|+
T Consensus 249 ~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 249 LGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 766654 3467899999999999999999954 68899999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhh
Q 047890 772 VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGA 823 (1134)
Q Consensus 772 ~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~ 823 (1134)
+||+||+|++.++|+||+||++|.|++|.|++|+...+...+.++.+.+...
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999988877777776666544
No 8
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2e-56 Score=504.35 Aligned_cols=377 Identities=44% Similarity=0.723 Sum_probs=346.3
Q ss_pred hhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhc-----CCCCCCC
Q 047890 456 YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLH-----NNPRNGP 530 (1134)
Q Consensus 456 ~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~-----~~~~~g~ 530 (1134)
++..++..++.++|+.|...||..|+|+|+.|||..++.+|+|.+|+||||||++|++|++..+..++ .+...++
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 34555667888899999999999999999999999999999999999999999999999999888765 2334789
Q ss_pred EEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEc
Q 047890 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLD 610 (1134)
Q Consensus 531 kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVID 610 (1134)
.+|||+|||+|+.||.++-.+|+...++.++.++||....++--.+..+|+|+|+||++|++.|....+.++.+.+||+|
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvld 403 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLD 403 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEecc
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred chhhhhccCchHHHHHHHHhCCC-------------------------CceEEEEeccCchhHHHHHHhhccCCeeeeec
Q 047890 611 EADRMLDMGFEPQIRKIVNEMPP-------------------------HRQTLMYTATWPKDVRKIASDLLVNPVQVNIG 665 (1134)
Q Consensus 611 EAHrll~~gf~~~i~~IL~~l~~-------------------------~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~ 665 (1134)
||++|++++|++.+.++|..++. .+|+++||||+++.++.+++.++.+++.++++
T Consensus 404 eadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig 483 (673)
T KOG0333|consen 404 EADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG 483 (673)
T ss_pred chhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec
Confidence 99999999999999999987752 16899999999999999999999999999997
Q ss_pred cchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHH
Q 047890 666 NVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVL 744 (1134)
Q Consensus 666 ~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il 744 (1134)
.... ....+.+.+.++...++...|.++++.. ....+|||+|+++.|+.|++.|.+ ++.+..|||+.++++|+.+|
T Consensus 484 ~~gk--~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 484 SAGK--PTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred cCCC--CccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHH
Confidence 6654 3456889999999999999999999876 467999999999999999999965 79999999999999999999
Q ss_pred HHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHH-hh
Q 047890 745 NQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLE-GA 823 (1134)
Q Consensus 745 ~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~-~~ 823 (1134)
..|++|..+||||||++++|||||+|.+|||||++.++++|+|||||+||+|+.|+++.|+++.|...+.+|...|. ..
T Consensus 561 ~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~ 640 (673)
T KOG0333|consen 561 ADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESV 640 (673)
T ss_pred HHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887 45
Q ss_pred cCCCCHHHHHHH
Q 047890 824 NQHVPPEVRDMA 835 (1134)
Q Consensus 824 ~~~lp~~l~dla 835 (1134)
....|+++..-.
T Consensus 641 ~s~~P~Ela~h~ 652 (673)
T KOG0333|consen 641 KSHCPPELANHP 652 (673)
T ss_pred hccCChhhccCh
Confidence 667777776544
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-56 Score=534.05 Aligned_cols=364 Identities=45% Similarity=0.703 Sum_probs=330.6
Q ss_pred hhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 457 ~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
..|.++.+...++.+|.+.||.+|||+|.++||.++.++|+|+.|+||||||++|++|++..+..... .....+|||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--~~~~~aLil~ 106 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--RKYVSALILA 106 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--cCCCceEEEC
Confidence 34556778889999999999999999999999999999999999999999999999999998763211 1111199999
Q ss_pred ccHHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhh
Q 047890 537 PTRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrl 615 (1134)
||||||.|++++++++.... ++.+++++||.+...+...+..+++|||+||++|++++....+++..+.+||+||||+|
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrm 186 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRM 186 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhh
Confidence 99999999999999999988 79999999999999999888888999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhH-HHHHHHH
Q 047890 616 LDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQME-KERRLQQ 694 (1134)
Q Consensus 616 l~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~e-k~~~L~~ 694 (1134)
++++|.+.+..|+..++.++|+++||||++..+.++++.++.++..+.+...........+.+.+..+...+ |...|..
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ 266 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK 266 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888864444446677888888888766 8888888
Q ss_pred HHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEE
Q 047890 695 ILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVV 773 (1134)
Q Consensus 695 llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~V 773 (1134)
+++.... .++||||+|+..++.|+..|.. ++.+..|||++++.+|.++++.|++|+++||||||++++||||++|++|
T Consensus 267 ll~~~~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 267 LLKDEDE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HHhcCCC-CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccccee
Confidence 8886554 4799999999999999999965 6899999999999999999999999999999999999999999999999
Q ss_pred EeecCCCChhhHHHhhhccCcCCCcceeEEEeccc-chHHHHHHHHHHHhh
Q 047890 774 INYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQ-DSKYAADLVKVLEGA 823 (1134)
Q Consensus 774 I~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~-d~~~~~~l~k~L~~~ 823 (1134)
||||+|.+.+.|+||+||+||+|.+|.+++|+.+. +...+.++.+.+...
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred EEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999975 788888887777655
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-55 Score=465.47 Aligned_cols=379 Identities=35% Similarity=0.590 Sum_probs=343.4
Q ss_pred CCChhHhhhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCC
Q 047890 449 DLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN 528 (1134)
Q Consensus 449 ~~~p~e~~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~ 528 (1134)
....++....|.++.+.+++|+.++..||++|..+|+.||+.|++|+|+|++|..|+|||.+|.+-++..+.- ...
T Consensus 19 Ts~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~----~~r 94 (400)
T KOG0328|consen 19 TSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI----SVR 94 (400)
T ss_pred eccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc----ccc
Confidence 3455667788899999999999999999999999999999999999999999999999999987776665432 124
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEE
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLV 608 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVV 608 (1134)
...+|||+|||||+.|+.+.+..++...++.|..+.||.+..+.++.+..++++|.+||++++++++...+....+.+||
T Consensus 95 ~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlV 174 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLV 174 (400)
T ss_pred eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEec-chhH
Q 047890 609 LDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVV-PQME 687 (1134)
Q Consensus 609 IDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v-~~~e 687 (1134)
+||||.|++.+|..++..++..+++..|++++|||+|.++.++..+++.+++.+.+.. +++.. +.+.+++..+ .+..
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkr-deltl-EgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKR-DELTL-EGIKQFFVAVEKEEW 252 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEec-CCCch-hhhhhheeeechhhh
Confidence 9999999999999999999999999999999999999999999999999999987743 44443 3345554444 4455
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccc
Q 047890 688 KERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLD 766 (1134)
Q Consensus 688 k~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLD 766 (1134)
|.+.|+++...+.- .+++|||||++.+++|.+.|.. ++.+..+||+|.+++|++++.+|++|+.+|||+||+.++|||
T Consensus 253 KfdtLcdLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiD 331 (400)
T KOG0328|consen 253 KFDTLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGID 331 (400)
T ss_pred hHhHHHHHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCC
Confidence 88999999887764 5899999999999999999965 788999999999999999999999999999999999999999
Q ss_pred cCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHH
Q 047890 767 IKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDM 834 (1134)
Q Consensus 767 Ip~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dl 834 (1134)
++-|++|||||+|.+.+.|+|||||.||.|++|+++.|+..+|.+.+.++.+.+.-...++|-.+.++
T Consensus 332 v~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 332 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred cceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 99999999999999999999999999999999999999999999999999999988888888776554
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.5e-53 Score=513.23 Aligned_cols=376 Identities=35% Similarity=0.594 Sum_probs=333.3
Q ss_pred hhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcC---CCCCCCEEE
Q 047890 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN---NPRNGPTVL 533 (1134)
Q Consensus 457 ~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~---~~~~g~kvL 533 (1134)
..|.++.+...++..|.+.||.+|||+|.++|+.++.++|+|++|+||||||++|++|++..+..... ....++++|
T Consensus 121 ~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aL 200 (518)
T PLN00206 121 LSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAM 200 (518)
T ss_pred cCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEE
Confidence 34455567777899999999999999999999999999999999999999999999999987653221 123578999
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchh
Q 047890 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEAD 613 (1134)
Q Consensus 534 VLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAH 613 (1134)
||+||++||.|++++++.+.....+.+.+++||......+..+..+++|||+||++|.+++....+.+.++.+|||||||
T Consensus 201 IL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad 280 (518)
T PLN00206 201 VLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD 280 (518)
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH
Confidence 99999999999999999998888888899999988888888888889999999999999999888899999999999999
Q ss_pred hhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHH
Q 047890 614 RMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQ 693 (1134)
Q Consensus 614 rll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~ 693 (1134)
+|++++|...+..++..++ ..|+|++|||++.+++.++..++.++..+.+.... .....+.+.+..+....+...|.
T Consensus 281 ~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~--~~~~~v~q~~~~~~~~~k~~~l~ 357 (518)
T PLN00206 281 CMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN--RPNKAVKQLAIWVETKQKKQKLF 357 (518)
T ss_pred HHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC--CCCcceeEEEEeccchhHHHHHH
Confidence 9999999999999998884 67899999999999999999998888777665433 23344566666677777777777
Q ss_pred HHHHHHh-cCCEEEEEeCcHHHHHHHHHHhcC--CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcc
Q 047890 694 QILRAQE-RGSRVIIFCSTKRLCDQLARSIGR--NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770 (1134)
Q Consensus 694 ~llk~~~-~~~kvLVF~nT~~~ae~La~~L~~--~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v 770 (1134)
++++... ...++||||+++..++.|++.|.. ++.+..+||+++.++|.++++.|++|+++|||||+++++||||+++
T Consensus 358 ~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v 437 (518)
T PLN00206 358 DILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRV 437 (518)
T ss_pred HHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccC
Confidence 7776543 246899999999999999999853 6789999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHH
Q 047890 771 RVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMA 835 (1134)
Q Consensus 771 ~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla 835 (1134)
++||+||+|.+.++|+||+||+||.|..|.+++|+..++...+.++++.|+...+.+|+++.++.
T Consensus 438 ~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 438 RQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred CEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999998766
No 12
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-54 Score=496.56 Aligned_cols=373 Identities=45% Similarity=0.749 Sum_probs=340.1
Q ss_pred ccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCC------CCCCCEEEEEc
Q 047890 463 SATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN------PRNGPTVLVLA 536 (1134)
Q Consensus 463 ~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~------~~~g~kvLVLv 536 (1134)
.+...++..+...+|+.|||+|+.+|+.+..+++++++|+||+|||.+|++|++..+.+.... ....+.+|||+
T Consensus 80 ~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIla 159 (482)
T KOG0335|consen 80 ILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILA 159 (482)
T ss_pred chhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEe
Confidence 345566778899999999999999999999999999999999999999999999887753221 11358999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
||+|||.|++++.++|.....++++.++++.....+...+.++|+|+|+||++|.++++.+.+.+.++.+|||||||+|+
T Consensus 160 pTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMl 239 (482)
T KOG0335|consen 160 PTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRML 239 (482)
T ss_pred CcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhh
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCchHHHHHHHHhCCC----CceEEEEeccCchhHHHHHHhhccC-CeeeeeccchhhhcccceeeEEEecchhHHHH
Q 047890 617 D-MGFEPQIRKIVNEMPP----HRQTLMYTATWPKDVRKIASDLLVN-PVQVNIGNVDELAANKAITQHVEVVPQMEKER 690 (1134)
Q Consensus 617 ~-~gf~~~i~~IL~~l~~----~~qiLllSATl~~~v~~l~~~~l~~-~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~ 690 (1134)
| ++|.+.|++|+..... .+|.+|||||++.++..++..++.+ ++.+.+..+.. ...++.+.+..+.+.+|..
T Consensus 240 D~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~--~~~ni~q~i~~V~~~~kr~ 317 (482)
T KOG0335|consen 240 DEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS--TSENITQKILFVNEMEKRS 317 (482)
T ss_pred hhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc--ccccceeEeeeecchhhHH
Confidence 9 9999999999988743 7899999999999999999988887 66666655543 4567888999999999999
Q ss_pred HHHHHHHHHh---cC-----CEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccc
Q 047890 691 RLQQILRAQE---RG-----SRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVA 761 (1134)
Q Consensus 691 ~L~~llk~~~---~~-----~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl 761 (1134)
.|.++|.... .. ++++|||.|++.|+.|+..|.. .+.+..||++.++.+|++.|+.|++|.+.|||||+++
T Consensus 318 ~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Va 397 (482)
T KOG0335|consen 318 KLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVA 397 (482)
T ss_pred HHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhh
Confidence 9998887554 22 3899999999999999999954 7889999999999999999999999999999999999
Q ss_pred eeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhh
Q 047890 762 ARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALR 837 (1134)
Q Consensus 762 ~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r 837 (1134)
++||||++|++||+||+|.+..+|+|||||+||+|+.|.++.|++..+..+.+.|+++|.++++++|.|+.+++..
T Consensus 398 aRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~~~~~ 473 (482)
T KOG0335|consen 398 ARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSELSRE 473 (482)
T ss_pred hcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996654
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.2e-52 Score=514.29 Aligned_cols=349 Identities=39% Similarity=0.637 Sum_probs=310.7
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
|.++.+..+++++|.+.||.+|+++|.++|+.+++++|+|++|+||+|||++|++|++..+... ...+++||||||
T Consensus 8 f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----~~~~~~LIL~PT 83 (629)
T PRK11634 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----LKAPQILVLAPT 83 (629)
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----cCCCeEEEEeCc
Confidence 5566788899999999999999999999999999999999999999999999999998876531 245789999999
Q ss_pred HHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 539 RELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 539 reLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
++||.|+++++++|.... ++.++.++++.....++..+..+++|||+||++|++++....+.+.++.+|||||||+|++
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~ 163 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR 163 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhh
Confidence 999999999999987654 6888999999988888888888899999999999999998888999999999999999999
Q ss_pred cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHH
Q 047890 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR 697 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk 697 (1134)
++|...+..++..++...|+++||||++..+..+++.++.++..+.+.... .....+.+.+..+....|...|..++.
T Consensus 164 ~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~--~~~~~i~q~~~~v~~~~k~~~L~~~L~ 241 (629)
T PRK11634 164 MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV--TTRPDISQSYWTVWGMRKNEALVRFLE 241 (629)
T ss_pred cccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--ccCCceEEEEEEechhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888777664332 233445666666777777788887776
Q ss_pred HHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEee
Q 047890 698 AQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINY 776 (1134)
Q Consensus 698 ~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~ 776 (1134)
.. ...++||||+|+..++.|++.|.. ++.+..+|++|++.+|++++++|++|+++|||||+++++|||+++|++||+|
T Consensus 242 ~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~ 320 (629)
T PRK11634 242 AE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNY 320 (629)
T ss_pred hc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEe
Confidence 53 346899999999999999999954 6889999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHH
Q 047890 777 DFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAA 814 (1134)
Q Consensus 777 d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~ 814 (1134)
|+|.+.+.|+||+||+||+|+.|.|++|+...+...+.
T Consensus 321 d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~ 358 (629)
T PRK11634 321 DIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 (629)
T ss_pred CCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHH
Confidence 99999999999999999999999999999876544433
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-52 Score=493.87 Aligned_cols=363 Identities=36% Similarity=0.587 Sum_probs=316.1
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCC---CCCCCEEEE
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN---PRNGPTVLV 534 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~---~~~g~kvLV 534 (1134)
.|.++.+...++++|.+.||..||++|++||+.++.++|+|++|+||||||++|++|++..+...... ...++++||
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~li 88 (423)
T PRK04837 9 KFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALI 88 (423)
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 34556778889999999999999999999999999999999999999999999999999877643321 124579999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh
Q 047890 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr 614 (1134)
|+||++||.|+++++.++....++.+.+++|+.........+..+++|||+||++|.+++....+.+.++++|||||||+
T Consensus 89 l~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~ 168 (423)
T PRK04837 89 MAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADR 168 (423)
T ss_pred ECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHH
Confidence 99999999999999999998888999999999888777778888899999999999999998889999999999999999
Q ss_pred hhccCchHHHHHHHHhCCC--CceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHH
Q 047890 615 MLDMGFEPQIRKIVNEMPP--HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRL 692 (1134)
Q Consensus 615 ll~~gf~~~i~~IL~~l~~--~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L 692 (1134)
|++++|...+..++..++. .++.+++|||++..+.+++...+.++..+.+..... ....+.+.+......++...|
T Consensus 169 l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~--~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK--TGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc--CCCceeEEEEeCCHHHHHHHH
Confidence 9999999999999998874 456899999999999999988888887776643322 223344455555556677777
Q ss_pred HHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcce
Q 047890 693 QQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771 (1134)
Q Consensus 693 ~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~ 771 (1134)
..+++.. ...++||||+++..|+.|++.|.. ++.+..+||+++.++|.++++.|++|+++|||||+++++||||++|+
T Consensus 247 ~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 247 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 7776643 357999999999999999999954 78899999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhh
Q 047890 772 VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGA 823 (1134)
Q Consensus 772 ~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~ 823 (1134)
+||+||+|.+.++|+||+||+||+|++|.|++|+.+.+...+..+.+.+...
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999998887777776666544
No 15
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-54 Score=483.64 Aligned_cols=362 Identities=35% Similarity=0.551 Sum_probs=321.5
Q ss_pred hhhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 047890 455 VYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534 (1134)
Q Consensus 455 ~~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLV 534 (1134)
.+..|.++++..++|+++...||..|||||..+||.+|-|+|++.+|.||||||.+|++|+|..|...+.. -...+|||
T Consensus 179 ~~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-~~~TRVLV 257 (691)
T KOG0338|consen 179 MNESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-VAATRVLV 257 (691)
T ss_pred HhhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-CcceeEEE
Confidence 36688999999999999999999999999999999999999999999999999999999999877654332 34568999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh-cccCCCCeEEEEEcchh
Q 047890 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM-KKIDFGQVSLLVLDEAD 613 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~-~~l~l~~l~lVVIDEAH 613 (1134)
|||||+|+.|++..++++...+.|.|++++||.+...+...|...+||||+||++|+++|++ ..+++++|.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999965 46889999999999999
Q ss_pred hhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEE-ec--chhHHHH
Q 047890 614 RMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVE-VV--PQMEKER 690 (1134)
Q Consensus 614 rll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~-~v--~~~ek~~ 690 (1134)
+|++.+|...+..|+..+++++|++|||||++.++.+++.-.|.+|+.|.+......+ ..+.+.+. +- .+.++..
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a--~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTA--PKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccc--hhhhHHHheeccccccccHH
Confidence 9999999999999999999999999999999999999999999999998875543322 23333332 22 1223444
Q ss_pred HHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCc
Q 047890 691 RLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769 (1134)
Q Consensus 691 ~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~ 769 (1134)
.|..++...- ...+|||+.|++.|.+|.-+|.- ++.+.-|||.+++.+|.+.+++|++.+++||||||++++||||.+
T Consensus 416 ~l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 416 MLASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 5555555433 57899999999999999888853 678889999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHH
Q 047890 770 IRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVL 820 (1134)
Q Consensus 770 v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L 820 (1134)
|.+||||++|.+.+.|+||+||++|+|+.|.+++|+.+.|..+++.+++..
T Consensus 495 V~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 495 VQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred eeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999888887763
No 16
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1e-53 Score=481.89 Aligned_cols=362 Identities=37% Similarity=0.576 Sum_probs=331.0
Q ss_pred hhhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 047890 455 VYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534 (1134)
Q Consensus 455 ~~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLV 534 (1134)
....+.+..+....+++|+++||..+|++|..+|+.++.++|+|+.|.||+|||++|++|++.++...+.....+..+||
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 34456677788888999999999999999999999999999999999999999999999999999988877778899999
Q ss_pred EcccHHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc-ccCCCCeEEEEEcch
Q 047890 535 LAPTRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK-KIDFGQVSLLVLDEA 612 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~-~l~l~~l~lVVIDEA 612 (1134)
||||||||.|++.+++++.... .+.+.+++||+........+.++|.|+|+||++|++++.+. .+.+.+++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999998887 89999999999999888899899999999999999999754 456677899999999
Q ss_pred hhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccC-CeeeeeccchhhhcccceeeEEEecchhHHHHH
Q 047890 613 DRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVN-PVQVNIGNVDELAANKAITQHVEVVPQMEKERR 691 (1134)
Q Consensus 613 Hrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~-~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~ 691 (1134)
|++++.+|...+..|+..++..+|.++||||.+.+|++++.-.+.. +..+.+....+......+.+-+.+++.......
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~l 319 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSL 319 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHH
Confidence 9999999999999999999999999999999999999999887765 777777666677777888888888888877788
Q ss_pred HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcc
Q 047890 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770 (1134)
Q Consensus 692 L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v 770 (1134)
+..+|+......+|||||.|...+..+++.|+. +++|..|||++++..|..+..+|++.+.-|||||||++||+|+|+|
T Consensus 320 l~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 320 LYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 888888877779999999999999999999975 7889999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHH
Q 047890 771 RVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADL 816 (1134)
Q Consensus 771 ~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l 816 (1134)
+.||.||+|.++++|+||+||++|.|+.|.+++++.+.+..++..+
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~L 445 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYL 445 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHH
Confidence 9999999999999999999999999999999999988776654444
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.2e-51 Score=490.52 Aligned_cols=356 Identities=40% Similarity=0.643 Sum_probs=316.8
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
|.++.+...++.+|...||.+|||+|++||+.++.++|+|++|+||||||++|++|++..+... ...+++|||+||
T Consensus 6 f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~----~~~~~~lil~Pt 81 (460)
T PRK11776 6 FSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK----RFRVQALVLCPT 81 (460)
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc----cCCceEEEEeCC
Confidence 4556677888999999999999999999999999999999999999999999999999877521 235689999999
Q ss_pred HHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 539 RELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 539 reLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
++|+.|+.++++++.... .+.+..++|+.....+...+..+++|||+||++|.+++....+.+.++++|||||||+|++
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~ 161 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLD 161 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhC
Confidence 999999999999987643 6888899999998888888888999999999999999998888899999999999999999
Q ss_pred cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHH
Q 047890 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR 697 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk 697 (1134)
++|...+..++..++..+|+|++|||++..+..++..++.++..+.+.... ....+.+.+..+...++...|..+++
T Consensus 162 ~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~~ll~ 238 (460)
T PRK11776 162 MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQRLLL 238 (460)
T ss_pred cCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888877664432 22346667777777778888888876
Q ss_pred HHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEee
Q 047890 698 AQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINY 776 (1134)
Q Consensus 698 ~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~ 776 (1134)
.. ...++||||++++.++.|++.|.+ ++.+..+||++++++|+.+++.|++|+++|||||+++++||||+++++||+|
T Consensus 239 ~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~ 317 (460)
T PRK11776 239 HH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINY 317 (460)
T ss_pred hc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEe
Confidence 54 346899999999999999999954 6889999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHh
Q 047890 777 DFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEG 822 (1134)
Q Consensus 777 d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~ 822 (1134)
|+|.+.+.|+||+||+||+|..|.|++|+...|...+..+.+.+..
T Consensus 318 d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 318 ELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred cCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999887776666665543
No 18
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.8e-54 Score=469.06 Aligned_cols=378 Identities=41% Similarity=0.662 Sum_probs=333.9
Q ss_pred hhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHH----hcCCCCCCCE
Q 047890 456 YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQ----LHNNPRNGPT 531 (1134)
Q Consensus 456 ~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~----~~~~~~~g~k 531 (1134)
+..|.++....++|+.|++.|+.+|||+|.+.||.+|+|+|+|.+|-||||||++|.+|++..... ++.....+|.
T Consensus 169 IksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~ 248 (610)
T KOG0341|consen 169 IKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPY 248 (610)
T ss_pred hhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCe
Confidence 456778889999999999999999999999999999999999999999999999999998764432 3445568999
Q ss_pred EEEEcccHHHHHHHHHHHHHhccC------CCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeE
Q 047890 532 VLVLAPTRELATQIQDEANKFGRS------SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVS 605 (1134)
Q Consensus 532 vLVLvPTreLa~Q~~~el~kl~~~------~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~ 605 (1134)
.|||||+||||.|+++.+..+... ..+++++.+||....+++..+..+++|+|+||++|.++|.++.+.++-+.
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CR 328 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACR 328 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHH
Confidence 999999999999999988776432 24678888999999999999999999999999999999999999999999
Q ss_pred EEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecch
Q 047890 606 LLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685 (1134)
Q Consensus 606 lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~ 685 (1134)
++++||||+|++++|+..|+.|+..+...+|+|+||||+|..+..+++..+.+|+.++++.... ...++.+.++.+..
T Consensus 329 yL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGA--AsldViQevEyVkq 406 (610)
T KOG0341|consen 329 YLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGA--ASLDVIQEVEYVKQ 406 (610)
T ss_pred HhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccc--cchhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998875443 23334444455555
Q ss_pred hHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHh-cCCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceec
Q 047890 686 MEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764 (1134)
Q Consensus 686 ~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L-~~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~G 764 (1134)
..|.-.|.+.|.. ...+|||||..+..++.++++| -+++.++.|||+..+++|...++.|+.|+.+||||||+++.|
T Consensus 407 EaKiVylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKG 484 (610)
T KOG0341|consen 407 EAKIVYLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKG 484 (610)
T ss_pred hhhhhhHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhcc
Confidence 5555555554433 4568999999999999999987 568899999999999999999999999999999999999999
Q ss_pred cccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccc-hHHHHHHHHHHHhhcCCCCHHHHHHHhh
Q 047890 765 LDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQD-SKYAADLVKVLEGANQHVPPEVRDMALR 837 (1134)
Q Consensus 765 LDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d-~~~~~~l~k~L~~~~~~lp~~l~dla~r 837 (1134)
||+|++.+|||||+|..+++|+|||||+||.|++|.+.+|++... ...+.++...|.++.+++|+.+..++-.
T Consensus 485 LDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~ 558 (610)
T KOG0341|consen 485 LDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGP 558 (610)
T ss_pred CCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCC
Confidence 999999999999999999999999999999999999999998764 4567788888999999999999988743
No 19
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-53 Score=452.02 Aligned_cols=366 Identities=33% Similarity=0.576 Sum_probs=338.3
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
++++..+..++|..|++.||.+|.|+|+++||.++.|+|+|+.|..|+|||.+|++|++..+.. +.....++||+|
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~----~~~~IQ~~ilVP 161 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP----KKNVIQAIILVP 161 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc----cccceeEEEEee
Confidence 3556667788899999999999999999999999999999999999999999999999887642 235568999999
Q ss_pred cHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 538 TRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
|||||.|+...++.+++..++.+.+.+||++....+-.+...++++|+||++++++.++....++++.++|+||||.|++
T Consensus 162 trelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs 241 (459)
T KOG0326|consen 162 TRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLS 241 (459)
T ss_pred cchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhc
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHH
Q 047890 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR 697 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk 697 (1134)
..|...+.+++..+++.+|++++|||+|-.|..+..+++.+|..|++- +++ ..+.+.+++..+.+..|..+|..++.
T Consensus 242 ~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM--~eL-tl~GvtQyYafV~e~qKvhCLntLfs 318 (459)
T KOG0326|consen 242 VDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM--EEL-TLKGVTQYYAFVEERQKVHCLNTLFS 318 (459)
T ss_pred hhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh--hhh-hhcchhhheeeechhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999887663 333 44678899999999999999999988
Q ss_pred HHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEee
Q 047890 698 AQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINY 776 (1134)
Q Consensus 698 ~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~ 776 (1134)
.+.- ...|||||+...+|.|++.+.+ +|.+..+|+.|.++.|.+++..|++|.++.|||||.+.+||||+.+++||||
T Consensus 319 kLqI-NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINF 397 (459)
T KOG0326|consen 319 KLQI-NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINF 397 (459)
T ss_pred Hhcc-cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEec
Confidence 8765 4679999999999999998865 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHH
Q 047890 777 DFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEV 831 (1134)
Q Consensus 777 d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l 831 (1134)
|+|.+.+.|+|||||.||.|.-|.++.+++.+|...+.++.+.|..+...+|..+
T Consensus 398 Dfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 398 DFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred CCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 9999999999999999999999999999999999999999998887777766543
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.5e-50 Score=479.88 Aligned_cols=362 Identities=35% Similarity=0.565 Sum_probs=314.2
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
|.++.+...+++.|...||.+|+++|.++|+.++.++|+|++|+||+|||++|++|++..+...........++|||+||
T Consensus 3 f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 82 (434)
T PRK11192 3 FSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPT 82 (434)
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCc
Confidence 45667788899999999999999999999999999999999999999999999999998876543333345799999999
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc
Q 047890 539 RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM 618 (1134)
Q Consensus 539 reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~ 618 (1134)
++|+.|+++.+..+....++.+..++|+.........+...++|||+||++|++++....+.+.++++|||||||+|+++
T Consensus 83 ~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~ 162 (434)
T PRK11192 83 RELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDM 162 (434)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCC
Confidence 99999999999999988899999999999888777777788999999999999999988888999999999999999999
Q ss_pred CchHHHHHHHHhCCCCceEEEEeccCch-hHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc-hhHHHHHHHHHH
Q 047890 619 GFEPQIRKIVNEMPPHRQTLMYTATWPK-DVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP-QMEKERRLQQIL 696 (1134)
Q Consensus 619 gf~~~i~~IL~~l~~~~qiLllSATl~~-~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~-~~ek~~~L~~ll 696 (1134)
+|...+..++..+....|+++||||++. .+..+...++.++..+.+..... ....+.+.+..+. ...+...|..++
T Consensus 163 ~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 163 GFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRR--ERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcc--cccCceEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999888999999999975 47788888887777665543221 2233444444444 345566666666
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN 775 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~ 775 (1134)
+. ....++||||++++.++.|++.|.. ++.+..+||+|+..+|..+++.|++|+++|||||+++++|||++++++||+
T Consensus 241 ~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~ 319 (434)
T PRK11192 241 KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN 319 (434)
T ss_pred hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE
Confidence 53 2457999999999999999999964 688999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhh
Q 047890 776 YDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGA 823 (1134)
Q Consensus 776 ~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~ 823 (1134)
||+|.+.+.|+||+||+||+|.+|.+++|+...|...+.++.+++...
T Consensus 320 ~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 320 FDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred ECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998888877777666543
No 21
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-51 Score=464.91 Aligned_cols=354 Identities=34% Similarity=0.535 Sum_probs=329.0
Q ss_pred hhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 047890 456 YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535 (1134)
Q Consensus 456 ~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVL 535 (1134)
...|.++.++.+.+++|.+++|..+|.+|+++|+.+|.|+|+|..|.||||||++|++|++..|.+.......+.-+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 44788899999999999999999999999999999999999999999999999999999999998888888889999999
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh-cccCCCCeEEEEEcchhh
Q 047890 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM-KKIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 536 vPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~-~~l~l~~l~lVVIDEAHr 614 (1134)
+||||||.|+++.|.+.+....+.+.+++||.+....+..+ ..++|+||||++|+.++.. ..++..++.+||+||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999999866665554 4589999999999999864 457788999999999999
Q ss_pred hhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHH
Q 047890 615 MLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQ 694 (1134)
Q Consensus 615 ll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ 694 (1134)
|++++|...+..|++.++..+|+|+||||-+..+.++++-.+.+|..|.+...........+.+.+.+++..+|...|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998866667777889999999999999999999
Q ss_pred HHHHHhcCCEEEEEeCcHHHHHHHHHHhcC---CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcce
Q 047890 695 ILRAQERGSRVIIFCSTKRLCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771 (1134)
Q Consensus 695 llk~~~~~~kvLVF~nT~~~ae~La~~L~~---~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~ 771 (1134)
+++..- ..++|||+.|-+.+..+++.+.+ ++.+..|||.|+++.|.++..+|.....-||+|||++++|||+|.|+
T Consensus 307 FI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 307 FIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 998654 47999999999999999988754 78899999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchH
Q 047890 772 VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSK 811 (1134)
Q Consensus 772 ~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~ 811 (1134)
+||.+|+|.+.+.|+||+||++|....|.+++|+...+.+
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEE 425 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHH
Confidence 9999999999999999999999999999999999988743
No 22
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-51 Score=455.48 Aligned_cols=349 Identities=36% Similarity=0.590 Sum_probs=311.0
Q ss_pred cchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCC-CCCCCEEEEEcccHHHH
Q 047890 464 ATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN-PRNGPTVLVLAPTRELA 542 (1134)
Q Consensus 464 v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~-~~~g~kvLVLvPTreLa 542 (1134)
+...++.++...||...||+|..+||.++.++|+++.|+||||||++|++|++..+.+.... +....-+|||+|||||+
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa 92 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELA 92 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHH
Confidence 45778999999999999999999999999999999999999999999999999988443332 22235799999999999
Q ss_pred HHHHHHHHHhccC-CCCceEEecCCCCCchhHHhhc-CCCcEEEeChHHHHHHHHhcc--cCCCCeEEEEEcchhhhhcc
Q 047890 543 TQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELD-QGADIVVATPGRLNDILEMKK--IDFGQVSLLVLDEADRMLDM 618 (1134)
Q Consensus 543 ~Q~~~el~kl~~~-~~i~v~~l~GG~~~~~~l~~l~-~~~dIIVaTPerL~~lL~~~~--l~l~~l~lVVIDEAHrll~~ 618 (1134)
.||.+.+..|... ..+++.+++||.+..+.+..+. +++.|+|+||++|.+++.... +++..+++||+||||+++++
T Consensus 93 ~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldm 172 (567)
T KOG0345|consen 93 RQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDM 172 (567)
T ss_pred HHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcc
Confidence 9999999888766 6789999999988888887775 458899999999999997644 45669999999999999999
Q ss_pred CchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHH
Q 047890 619 GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA 698 (1134)
Q Consensus 619 gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~ 698 (1134)
+|...+..||..+++.+.+=+||||...++.++.+.-+.+++.+.+...........+..++.++...+|...|..+|..
T Consensus 173 gFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~ 252 (567)
T KOG0345|consen 173 GFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNN 252 (567)
T ss_pred cHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999887766555666677888899999999999999987
Q ss_pred HhcCCEEEEEeCcHHHHHHHHHHhc---CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe
Q 047890 699 QERGSRVIIFCSTKRLCDQLARSIG---RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN 775 (1134)
Q Consensus 699 ~~~~~kvLVF~nT~~~ae~La~~L~---~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~ 775 (1134)
. ..+++|||+.|-..++.++..|. ....+..+||.|.++.|.++++.|.+....||+|||++++|||||+|++||+
T Consensus 253 ~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ 331 (567)
T KOG0345|consen 253 N-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ 331 (567)
T ss_pred c-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe
Confidence 4 45899999998887777777664 4577999999999999999999999988899999999999999999999999
Q ss_pred ecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHH
Q 047890 776 YDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYA 813 (1134)
Q Consensus 776 ~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~ 813 (1134)
||+|.++..|+||+||++|+|+.|.+++|+.+.+..++
T Consensus 332 ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 332 FDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred cCCCCChhHHHhhcchhhhccCccceEEEecccHHHHH
Confidence 99999999999999999999999999999999665553
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-49 Score=474.83 Aligned_cols=366 Identities=37% Similarity=0.580 Sum_probs=316.0
Q ss_pred hhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCC---CCCCEE
Q 047890 456 YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNP---RNGPTV 532 (1134)
Q Consensus 456 ~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~---~~g~kv 532 (1134)
...+.++.+...++..|.+.||.+|+++|.++|+.+++|+|+|++++||||||++|++|++..+....... ...+++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 34566677888999999999999999999999999999999999999999999999999998776432111 125789
Q ss_pred EEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhc-CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcc
Q 047890 533 LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELD-QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDE 611 (1134)
Q Consensus 533 LVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDE 611 (1134)
|||+||++|+.|+++.++.+....++.+..++|+.........+. ..++|||+||++|++++....+.+.++++|||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 999999999999999999998888899999999887776666654 4589999999999999888888899999999999
Q ss_pred hhhhhccCchHHHHHHHHhCCC--CceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHH
Q 047890 612 ADRMLDMGFEPQIRKIVNEMPP--HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE 689 (1134)
Q Consensus 612 AHrll~~gf~~~i~~IL~~l~~--~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~ 689 (1134)
||++++++|...+..++..++. ..|+|++|||++.++.+++..++.++..+.+.... .....+.+++..+...++.
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN--VASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc--CCCCcccEEEEEecchhHH
Confidence 9999999999999999988854 56999999999999999999998888776654332 1223355566666666777
Q ss_pred HHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccC
Q 047890 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK 768 (1134)
Q Consensus 690 ~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp 768 (1134)
..|..++... ...++||||++++.++.|++.|.+ ++.+..+||+++.++|.++++.|++|+++|||||+++++||||+
T Consensus 324 ~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 324 KLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 7777776543 346999999999999999999954 67899999999999999999999999999999999999999999
Q ss_pred cceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhc
Q 047890 769 DIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGAN 824 (1134)
Q Consensus 769 ~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~ 824 (1134)
++++||+|++|.+..+|+||+||+||.|++|.+++|+.+.|...+..+.+.+....
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999888877777777665553
No 24
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-51 Score=443.18 Aligned_cols=366 Identities=33% Similarity=0.493 Sum_probs=328.4
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
|..+.+..=+++.+.+.|+++|||+|..+||.||+|+|||-+|.||||||++|.+|+++.|... +.+..+|||+||
T Consensus 9 F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed----P~giFalvlTPT 84 (442)
T KOG0340|consen 9 FSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED----PYGIFALVLTPT 84 (442)
T ss_pred hhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC----CCcceEEEecch
Confidence 4455666667889999999999999999999999999999999999999999999999887642 367799999999
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc----ccCCCCeEEEEEcchhh
Q 047890 539 RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK----KIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 539 reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~----~l~l~~l~lVVIDEAHr 614 (1134)
+||+.|+.+.|..++....+++++++||.+.-.+...|.+..+|||+||++|.+++..+ .+.+.++.++|+||||+
T Consensus 85 rELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADr 164 (442)
T KOG0340|consen 85 RELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADR 164 (442)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhh
Confidence 99999999999999999999999999999888888889999999999999999998765 34578999999999999
Q ss_pred hhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHH
Q 047890 615 MLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQ 694 (1134)
Q Consensus 615 ll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ 694 (1134)
+++..|.+.+.-+.+.++..+|.++||||+++.+..+..--...+..+.++..+.......+.+.+..++...++..|..
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 99999999999999999999999999999998888776655555455556566666666778888889999999999999
Q ss_pred HHHHHhc--CCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcce
Q 047890 695 ILRAQER--GSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771 (1134)
Q Consensus 695 llk~~~~--~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~ 771 (1134)
+|+..+. ...++||+|+..+|+.|+..|+. .+.+..+|+-|.+++|...+.+|+++..+||||||++++|||||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 9987766 78999999999999999999965 68899999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCC
Q 047890 772 VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVP 828 (1134)
Q Consensus 772 ~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp 828 (1134)
+|||+|.|.++.+|+||+||++|+|+.|.++.|+.+.|.+.+..+.+.+..+..+..
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999999999988888887776655433
No 25
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-50 Score=486.55 Aligned_cols=372 Identities=42% Similarity=0.718 Sum_probs=342.3
Q ss_pred hhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhc-CCCCCCCEEEEEcccHHHHHH
Q 047890 466 LPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLH-NNPRNGPTVLVLAPTRELATQ 544 (1134)
Q Consensus 466 ~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~-~~~~~g~kvLVLvPTreLa~Q 544 (1134)
..+|..+++.||.+||+||.+|||+|+.|+|||.+|.||||||++|++|++.++.... .....+|.+||||||++|+.|
T Consensus 374 ~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~Q 453 (997)
T KOG0334|consen 374 SKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQ 453 (997)
T ss_pred HHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHH
Confidence 3458888999999999999999999999999999999999999999999996665322 233569999999999999999
Q ss_pred HHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc---CCCCeEEEEEcchhhhhccCch
Q 047890 545 IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI---DFGQVSLLVLDEADRMLDMGFE 621 (1134)
Q Consensus 545 ~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l---~l~~l~lVVIDEAHrll~~gf~ 621 (1134)
|.+++++|+...++.+++++|+......+..+.+++.|+||||++.++++..+.- ++.++.+||+||||+|++++|.
T Consensus 454 I~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfe 533 (997)
T KOG0334|consen 454 IHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFE 533 (997)
T ss_pred HHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccC
Confidence 9999999999999999999999999999999999999999999999999866544 4566679999999999999999
Q ss_pred HHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc-hhHHHHHHHHHHHHHh
Q 047890 622 PQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP-QMEKERRLQQILRAQE 700 (1134)
Q Consensus 622 ~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~-~~ek~~~L~~llk~~~ 700 (1134)
+.+..|++.+.+.+|++++|||++..++.++..++..|+.+.+. ......+.+.+.+.++. +.+|...|.++|....
T Consensus 534 Pq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~ 611 (997)
T KOG0334|consen 534 PQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCAIENEKFLKLLELLGERY 611 (997)
T ss_pred cccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEecCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887665 34456677888888888 8889999999999988
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCC
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFP 779 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P 779 (1134)
...++||||...+.|+.|.+.|. .++.+..|||+.++.+|..+++.|+++.+.+||||+++++|||+..+.+|||||+|
T Consensus 612 e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~p 691 (997)
T KOG0334|consen 612 EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFP 691 (997)
T ss_pred hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccc
Confidence 89999999999999999999885 47888889999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhhcC
Q 047890 780 NGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCG 839 (1134)
Q Consensus 780 ~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r~g 839 (1134)
...++|+||+||++|+|.+|.|++|+.+.+.+++.+|.+.|+...+.+|..+..|..+..
T Consensus 692 nh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~ 751 (997)
T KOG0334|consen 692 NHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFK 751 (997)
T ss_pred hhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887743
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-49 Score=447.58 Aligned_cols=358 Identities=34% Similarity=0.553 Sum_probs=303.1
Q ss_pred hccccccchhHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcC--CCCCCCEEEE
Q 047890 458 QRHEVSATLPRVASMHS-AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN--NPRNGPTVLV 534 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~-~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~--~~~~g~kvLV 534 (1134)
.|..+.+..-+++.|+. ++|..||.+|+++||.+++++|+||.+.||||||++|++|++..|..+.. ....++.+||
T Consensus 137 ~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALV 216 (708)
T KOG0348|consen 137 AFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALV 216 (708)
T ss_pred cchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEE
Confidence 45556666666666654 79999999999999999999999999999999999999999998876543 2347899999
Q ss_pred EcccHHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh-cccCCCCeEEEEEcch
Q 047890 535 LAPTRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM-KKIDFGQVSLLVLDEA 612 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~-~~l~l~~l~lVVIDEA 612 (1134)
||||||||.|+|+.+.++...+ .|..+++.||.....+...+.++++|+|+||++|.|+|.. ..+.+..+.+|||||+
T Consensus 217 ivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEa 296 (708)
T KOG0348|consen 217 IVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEA 296 (708)
T ss_pred EechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecch
Confidence 9999999999999999997654 4566788899988888899999999999999999999864 5678889999999999
Q ss_pred hhhhccCchHHHHHHHHhCC-------------CCceEEEEeccCchhHHHHHHhhccCCeeeeeccc------------
Q 047890 613 DRMLDMGFEPQIRKIVNEMP-------------PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNV------------ 667 (1134)
Q Consensus 613 Hrll~~gf~~~i~~IL~~l~-------------~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~------------ 667 (1134)
|+|++.||+..|..|++.+. ...|.+++|||+++.|..++...|.+++.|.+...
T Consensus 297 DrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ 376 (708)
T KOG0348|consen 297 DRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQ 376 (708)
T ss_pred hHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhh
Confidence 99999999999999988762 23678999999999999999999999988762211
Q ss_pred -----------hhhhcccceeeEEEecchhHHHHHHHHHHHHH---hcCCEEEEEeCcHHHHHHHHHHhcC---------
Q 047890 668 -----------DELAANKAITQHVEVVPQMEKERRLQQILRAQ---ERGSRVIIFCSTKRLCDQLARSIGR--------- 724 (1134)
Q Consensus 668 -----------d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~---~~~~kvLVF~nT~~~ae~La~~L~~--------- 724 (1134)
+.......+.+++.+++..-..-.|..+|... ....++|||+.+.+.++.-+..|..
T Consensus 377 ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~ 456 (708)
T KOG0348|consen 377 EVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGS 456 (708)
T ss_pred hcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccc
Confidence 11222344566777788777777777766543 2346899999999998888777632
Q ss_pred --------------CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhh
Q 047890 725 --------------NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIG 790 (1134)
Q Consensus 725 --------------~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiG 790 (1134)
+.++..|||+|++++|..++..|...+..||+||||+++|||+|.|.+||.||+|.+.++|+||+|
T Consensus 457 s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvG 536 (708)
T KOG0348|consen 457 SGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVG 536 (708)
T ss_pred cCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhh
Confidence 135788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCCcceeEEEecccchHHHHH
Q 047890 791 RTGRAGATGVAHTFFSEQDSKYAAD 815 (1134)
Q Consensus 791 RagR~GqkG~~ii~~~~~d~~~~~~ 815 (1134)
|++|+|.+|.+++|+.+.+.++...
T Consensus 537 RTARaG~kG~alLfL~P~Eaey~~~ 561 (708)
T KOG0348|consen 537 RTARAGEKGEALLFLLPSEAEYVNY 561 (708)
T ss_pred hhhhccCCCceEEEecccHHHHHHH
Confidence 9999999999999999988875433
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.7e-48 Score=454.28 Aligned_cols=367 Identities=31% Similarity=0.569 Sum_probs=311.0
Q ss_pred hhhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 047890 455 VYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534 (1134)
Q Consensus 455 ~~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLV 534 (1134)
....+.++.+...++++|++.||.+|+++|.++|+.++.++++|++||||+|||++|+++++..+.. .....++||
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~----~~~~~~~li 101 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY----DLNACQALI 101 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC----CCCCceEEE
Confidence 3455667778888999999999999999999999999999999999999999999999999877642 124568999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh
Q 047890 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr 614 (1134)
|+|+++|+.|+.+.+..++....+.+..++|+.........+..+++|+|+||++|.+++....+.+.++++|||||||+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988777888888888877777777778899999999999999988888899999999999999
Q ss_pred hhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecch-hHHHHHHH
Q 047890 615 MLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRLQ 693 (1134)
Q Consensus 615 ll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~-~ek~~~L~ 693 (1134)
+++.+|...+..++..++...++|++|||++.++.++...++.++..+.+..... ....+...+..+.. ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL--TLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc--ccCCceEEEEecChHHHHHHHHH
Confidence 9999999999999999999999999999999999998888887776654432221 12223333333332 23444555
Q ss_pred HHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceE
Q 047890 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772 (1134)
Q Consensus 694 ~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~ 772 (1134)
.+++.. ...++||||++++.++.+++.|.. ++.+..+|++++.++|..++++|++|+++|||||+++++|||++++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 555433 346899999999999999999964 578999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCC
Q 047890 773 VINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVP 828 (1134)
Q Consensus 773 VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp 828 (1134)
||++|+|.+...|+||+||+||.|++|.|++|+...+...+..+.+.+.....+.+
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999998888877777666654444433
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-48 Score=432.91 Aligned_cols=363 Identities=30% Similarity=0.467 Sum_probs=319.5
Q ss_pred hhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcC--CCCCCCEEEE
Q 047890 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN--NPRNGPTVLV 534 (1134)
Q Consensus 457 ~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~--~~~~g~kvLV 534 (1134)
..|+++.++..++.+|.+.||.+||-+|..|||.+|+++|++..|.||||||++|++|++..|...+. ....++.+||
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 67888999999999999999999999999999999999999999999999999999999987754332 3567899999
Q ss_pred EcccHHHHHHHHHHHHHhccCCC--CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcc-cCCCCeEEEEEcc
Q 047890 535 LAPTRELATQIQDEANKFGRSSR--LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKK-IDFGQVSLLVLDE 611 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~~--i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~-l~l~~l~lVVIDE 611 (1134)
|+||+|||.|+++.+.++...+. ++++-+..+.+.......+....+|||+||.+|+.++.... ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999865544 45555555555444556677789999999999999998777 6788999999999
Q ss_pred hhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHH
Q 047890 612 ADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERR 691 (1134)
Q Consensus 612 AHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~ 691 (1134)
||.++..||++.+.++...+++..|.++||||+..++..+.+.++.+|+.+.+... ++.....+.++...+.+.+|..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~-el~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEG-ELPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccc-cCCCcccceEEEEEeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999887554 44456678888888898889888
Q ss_pred HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeeccc----------
Q 047890 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDV---------- 760 (1134)
Q Consensus 692 L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdv---------- 760 (1134)
+..+++..--.+++|||+||++.|-+|.-.|.. +++.++|++.|+...|..|+++|+.|-++||||||.
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 888888766678999999999999999888865 678899999999999999999999999999999982
Q ss_pred -------------------------ceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHH
Q 047890 761 -------------------------AARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAAD 815 (1134)
Q Consensus 761 -------------------------l~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~ 815 (1134)
.++|||+..|.+|||||+|.+...|+||+||++|++++|.++.|+.+.+..-...
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 4789999999999999999999999999999999999999999999887764444
Q ss_pred HHHHH
Q 047890 816 LVKVL 820 (1134)
Q Consensus 816 l~k~L 820 (1134)
+...+
T Consensus 418 le~~~ 422 (569)
T KOG0346|consen 418 LESIL 422 (569)
T ss_pred HHHHH
Confidence 44433
No 29
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-46 Score=413.30 Aligned_cols=386 Identities=35% Similarity=0.571 Sum_probs=343.7
Q ss_pred CCCCCCCCCcCCChhHhhhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHH
Q 047890 439 PTFMGSPGVTDLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 439 P~~~~~p~i~~~~p~e~~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~ 518 (1134)
|..+++..+-+-.+.++...|.++.+.+++|+.|+..||.+|+.+|+.||..+.+|.|+++.+.+|+|||.+|+++++..
T Consensus 8 ~~~~e~~~~iesn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~ 87 (397)
T KOG0327|consen 8 PDGMEPEGVIESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQ 87 (397)
T ss_pred CcccCccccccccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhh
Confidence 44555566777788999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhh-cCCCcEEEeChHHHHHHHHhc
Q 047890 519 LRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL-DQGADIVVATPGRLNDILEMK 597 (1134)
Q Consensus 519 L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l-~~~~dIIVaTPerL~~lL~~~ 597 (1134)
+. .+.....+|+++|+++|+.|+.+.++.++...++++..+.|+.........+ ...++|+|+||+++.+++...
T Consensus 88 iD----~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~ 163 (397)
T KOG0327|consen 88 ID----MSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG 163 (397)
T ss_pred cC----cchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc
Confidence 53 2334568999999999999999999999999999999899988776444444 445899999999999999988
Q ss_pred ccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhccccee
Q 047890 598 KIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAIT 677 (1134)
Q Consensus 598 ~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~ 677 (1134)
.+....+.++|+||+|.|+..+|.+.|+.|++.++.+.|++++|||.+.++..+.++++.+++.+.+... ++. .+-+.
T Consensus 164 ~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~-~lt-l~gik 241 (397)
T KOG0327|consen 164 SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD-ELT-LEGIK 241 (397)
T ss_pred cccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecch-hhh-hhhee
Confidence 8888899999999999999999999999999999999999999999999999999999999999887554 344 45566
Q ss_pred eEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeee
Q 047890 678 QHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILV 756 (1134)
Q Consensus 678 ~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLV 756 (1134)
+.+.-+...+|...|..+.+ .-...+|||||++.++.|...|.+ ++.+..+|++|.+.+|+.++++|+.|..+|||
T Consensus 242 q~~i~v~k~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlI 318 (397)
T KOG0327|consen 242 QFYINVEKEEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLI 318 (397)
T ss_pred eeeeeccccccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEe
Confidence 66666666668888888887 456899999999999999999944 68899999999999999999999999999999
Q ss_pred ecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHH
Q 047890 757 ATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRD 833 (1134)
Q Consensus 757 ATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~d 833 (1134)
+|+.+++|||+..+.+||+|++|...++|+||+||+||.|.+|.++.++.+.+...+.++.+.......++|....+
T Consensus 319 ttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 319 TTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 99999999999999999999999999999999999999999999999999999999888887776666666655544
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-47 Score=431.34 Aligned_cols=365 Identities=32% Similarity=0.506 Sum_probs=291.7
Q ss_pred hhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCC-------CCC
Q 047890 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNN-------PRN 528 (1134)
Q Consensus 457 ~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~-------~~~ 528 (1134)
..+..+.+..++|.+|...||.+||+||..+||.+..+ .|+|..|+||||||++|.+|++..+....+. ...
T Consensus 181 sAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k 260 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAK 260 (731)
T ss_pred HHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhc
Confidence 34455678899999999999999999999999999999 7999999999999999999999855432211 123
Q ss_pred CCE--EEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc---CCCC
Q 047890 529 GPT--VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI---DFGQ 603 (1134)
Q Consensus 529 g~k--vLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l---~l~~ 603 (1134)
.++ +|||+||||||.|+.+.|..+....++.+..++||.....+.+.+....+|||+||++|+.++..... .+.+
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 344 99999999999999999999999999999999999999988888888999999999999999987665 4677
Q ss_pred eEEEEEcchhhhhccCchHHHHHHHHhCC-----CCceEEEEeccCchhHHH---------------------HHHhh--
Q 047890 604 VSLLVLDEADRMLDMGFEPQIRKIVNEMP-----PHRQTLMYTATWPKDVRK---------------------IASDL-- 655 (1134)
Q Consensus 604 l~lVVIDEAHrll~~gf~~~i~~IL~~l~-----~~~qiLllSATl~~~v~~---------------------l~~~~-- 655 (1134)
+.+|||||+|+|+..+....+.+||+.+. ..+|++.||||++..... +++.+
T Consensus 341 vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~ 420 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGF 420 (731)
T ss_pred ceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCc
Confidence 89999999999999998888888887764 467999999997633221 11111
Q ss_pred ccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCC
Q 047890 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGD 734 (1134)
Q Consensus 656 l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ 734 (1134)
..++..|.+.... .....+......++..+|+..|..+|. ...+++|||||+++.+.+|+-+|+. ++....||+.
T Consensus 421 ~~kpkiiD~t~q~--~ta~~l~Es~I~C~~~eKD~ylyYfl~--ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~ 496 (731)
T KOG0347|consen 421 RGKPKIIDLTPQS--ATASTLTESLIECPPLEKDLYLYYFLT--RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHAS 496 (731)
T ss_pred cCCCeeEecCcch--hHHHHHHHHhhcCCccccceeEEEEEe--ecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHH
Confidence 0111222211100 000011111111222222222222211 2347899999999999999999965 7788999999
Q ss_pred CChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHH
Q 047890 735 KSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAA 814 (1134)
Q Consensus 735 ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~ 814 (1134)
|.+++|.+.|++|++....|||||||++||||||+|.+||||-.|.+.+.|+||.||++|++..|+.++|+.+.+...+.
T Consensus 497 M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~ 576 (731)
T KOG0347|consen 497 MIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLK 576 (731)
T ss_pred HHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 047890 815 DLVKVLEGANQ 825 (1134)
Q Consensus 815 ~l~k~L~~~~~ 825 (1134)
+|.+-|+...+
T Consensus 577 KL~ktL~k~~d 587 (731)
T KOG0347|consen 577 KLCKTLKKKED 587 (731)
T ss_pred HHHHHHhhccC
Confidence 99888876543
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-45 Score=400.23 Aligned_cols=364 Identities=29% Similarity=0.478 Sum_probs=305.7
Q ss_pred CChhHhhhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCC
Q 047890 450 LSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR 527 (1134)
Q Consensus 450 ~~p~e~~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~ 527 (1134)
-+|......|+++.+..++|+.|+.++|.+|+.+|+.|+|.+|.. +++|.++..|+|||.+|.+.+|..+. ...
T Consensus 83 nsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd----~~~ 158 (477)
T KOG0332|consen 83 NSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD----PDV 158 (477)
T ss_pred CCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC----ccc
Confidence 355666778999999999999999999999999999999999987 89999999999999999988876543 123
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh-cccCCCCeEE
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM-KKIDFGQVSL 606 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~-~~l~l~~l~l 606 (1134)
..|.+|+|+||++||.|+.+.+.+.++...+.....+-+..... .-.-...|+|+||+.+.+++.. +.+.+..+.+
T Consensus 159 ~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r---G~~i~eqIviGTPGtv~Dlm~klk~id~~kikv 235 (477)
T KOG0332|consen 159 VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR---GNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKV 235 (477)
T ss_pred cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc---CCcchhheeeCCCccHHHHHHHHHhhChhhceE
Confidence 56789999999999999999999999888777777665541110 0011257999999999999876 7888999999
Q ss_pred EEEcchhhhhcc-CchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEE-ecc
Q 047890 607 LVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVE-VVP 684 (1134)
Q Consensus 607 VVIDEAHrll~~-gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~-~v~ 684 (1134)
+|+||||.|++. ||.+.-..|...++++.|+|++|||+...+..++..++.++..+.+... ++.. ..+.+++. ...
T Consensus 236 fVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e-el~L-~~IkQlyv~C~~ 313 (477)
T KOG0332|consen 236 FVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKRE-ELAL-DNIKQLYVLCAC 313 (477)
T ss_pred EEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehh-hccc-cchhhheeeccc
Confidence 999999998874 6888888999999999999999999999999999999999988777543 3333 33444444 445
Q ss_pred hhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeeccccee
Q 047890 685 QMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAAR 763 (1134)
Q Consensus 685 ~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~ 763 (1134)
..+|...|..+...+.- ...||||.|+..+.+|+..|. +++.|.++||+|+..+|+.++++|++|..+|||+|++++|
T Consensus 314 ~~~K~~~l~~lyg~~ti-gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~AR 392 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLLTI-GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCAR 392 (477)
T ss_pred hhhHHHHHHHHHhhhhh-hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhc
Confidence 56788888887665544 578999999999999999995 4789999999999999999999999999999999999999
Q ss_pred ccccCcceEEEeecCCC------ChhhHHHhhhccCcCCCcceeEEEecccchHH-HHHHHHHHHhh
Q 047890 764 GLDIKDIRVVINYDFPN------GVEDYVHRIGRTGRAGATGVAHTFFSEQDSKY-AADLVKVLEGA 823 (1134)
Q Consensus 764 GLDIp~v~~VI~~d~P~------s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~-~~~l~k~L~~~ 823 (1134)
|||+..|++|||||+|. +.+.|+|||||+||.|++|.++.|+...+... ...|.+.++..
T Consensus 393 GiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 393 GIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred ccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 99999999999999995 57899999999999999999999998766543 33455555433
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.3e-43 Score=440.11 Aligned_cols=342 Identities=22% Similarity=0.275 Sum_probs=261.9
Q ss_pred cchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHH
Q 047890 464 ATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 464 v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~ 543 (1134)
+...+++.|.+.||++|+++|.+||+.+++++|+|++++||||||++|++|++..+... ...++|||+||++|+.
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-----~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-----PRATALYLAPTKALAA 95 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-----CCcEEEEEcChHHHHH
Confidence 44567889999999999999999999999999999999999999999999999887531 3579999999999999
Q ss_pred HHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh----cccCCCCeEEEEEcchhhhhccC
Q 047890 544 QIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM----KKIDFGQVSLLVLDEADRMLDMG 619 (1134)
Q Consensus 544 Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~----~~l~l~~l~lVVIDEAHrll~~g 619 (1134)
|+++.++++. ..++++..+.|+.. ......+...++|||+||+.|...+.. ....+.++++|||||||.+.+.
T Consensus 96 q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~- 172 (742)
T TIGR03817 96 DQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV- 172 (742)
T ss_pred HHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-
Confidence 9999999987 34677777777665 444455667799999999998753321 1123789999999999998763
Q ss_pred chHHHHHHHH-------hCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc--------
Q 047890 620 FEPQIRKIVN-------EMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP-------- 684 (1134)
Q Consensus 620 f~~~i~~IL~-------~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~-------- 684 (1134)
|...+..++. .+....|+|++|||+++.. +++..++..+..+ +.. +..... .. ....+..
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~-i~~-~~~~~~-~~-~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVA-VTE-DGSPRG-AR-TVALWEPPLTELTGE 247 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEE-ECC-CCCCcC-ce-EEEEecCCccccccc
Confidence 6555444433 3456789999999998765 4566666665433 211 111111 01 1111111
Q ss_pred ---------hhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC---------CCcEEEecCCCChhHHHHHHHH
Q 047890 685 ---------QMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR---------NFGAIAIHGDKSQGERDWVLNQ 746 (1134)
Q Consensus 685 ---------~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~---------~~~v~~LhG~ms~~eR~~il~~ 746 (1134)
..++...|..++ ..+.++||||+|++.++.|+..|.+ ...+..+|+++++++|.+++++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~---~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLV---AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHH---HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 112333344443 3468999999999999999988743 3467899999999999999999
Q ss_pred HhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEeccc--chHHHHHHHHHHH
Q 047890 747 FRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQ--DSKYAADLVKVLE 821 (1134)
Q Consensus 747 FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~--d~~~~~~l~k~L~ 821 (1134)
|++|+++|||||+++++||||+++++||++++|.+.++|+||+||+||.|+.|.+++++... |........+.++
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999888643 3333333333443
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-44 Score=399.40 Aligned_cols=359 Identities=37% Similarity=0.571 Sum_probs=329.6
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.|..+.+...++.+|.+.||..|||+|++.||.+|++++++..+-||||||.||++|++..|+... ..+.++||++|
T Consensus 22 ~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---~~g~Ralilsp 98 (529)
T KOG0337|consen 22 GFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---QTGLRALILSP 98 (529)
T ss_pred CccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---ccccceeeccC
Confidence 466778889999999999999999999999999999999999999999999999999999988654 36779999999
Q ss_pred cHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 538 TRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
|++|+.|..+.++.++...++.+.+++|+....++...+..+.||||+||++|..+.-.-.+.|..+.+|||||+|+|+.
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfe 178 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFE 178 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHh
Confidence 99999999999999999999999999999999999999998999999999999988877778999999999999999999
Q ss_pred cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHH
Q 047890 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR 697 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk 697 (1134)
++|.+.+.+++..++..+|+++||||+|..+.++++.-+.++..+.+.....+ ...+...+..+...+|...|..++.
T Consensus 179 mgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetki--se~lk~~f~~~~~a~K~aaLl~il~ 256 (529)
T KOG0337|consen 179 MGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKI--SELLKVRFFRVRKAEKEAALLSILG 256 (529)
T ss_pred hhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhc--chhhhhheeeeccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988876444333 3345556777888999999999998
Q ss_pred HHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEee
Q 047890 698 AQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINY 776 (1134)
Q Consensus 698 ~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~ 776 (1134)
.....+.+||||.|+.+++.+...|.. ++.+..+.+.+++..|..-+.+|+.++..+||.||++++|+|||.++.||||
T Consensus 257 ~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnviny 336 (529)
T KOG0337|consen 257 GRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINY 336 (529)
T ss_pred ccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccc
Confidence 877778999999999999999999864 6888899999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHH
Q 047890 777 DFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLE 821 (1134)
Q Consensus 777 d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~ 821 (1134)
|+|.+...|+||+||+.|+|..|++|.++...+..+..+|...+.
T Consensus 337 d~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflg 381 (529)
T KOG0337|consen 337 DFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLG 381 (529)
T ss_pred cCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcC
Confidence 999999999999999999999999999999999888877765553
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.1e-43 Score=407.01 Aligned_cols=344 Identities=30% Similarity=0.510 Sum_probs=301.7
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
|+++.+..++|..|..++|..||++|..|||.++.+.|+||+|..|+|||++|.++++..|.- ....+.++||+||
T Consensus 27 fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~----~~~~~q~~Iv~PT 102 (980)
T KOG4284|consen 27 FEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS----RSSHIQKVIVTPT 102 (980)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc----ccCcceeEEEecc
Confidence 445556678899999999999999999999999999999999999999999999888776542 2356789999999
Q ss_pred HHHHHHHHHHHHHhccC-CCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 539 RELATQIQDEANKFGRS-SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 539 reLa~Q~~~el~kl~~~-~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
|||+-|+.+.+.+++.. .+++|.+.+||+.....+..+. .+.|+|+||++|..+++...++...++++||||||.|++
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~ 181 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMD 181 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhc
Confidence 99999999999999864 5789999999998877766654 478999999999999999999999999999999999998
Q ss_pred -cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchh--------HH
Q 047890 618 -MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQM--------EK 688 (1134)
Q Consensus 618 -~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~--------ek 688 (1134)
..|...|..|++.++..+|++.+|||.|..+.+++.+++.++..+.....+. ....|.+++..+... .|
T Consensus 182 t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~--~L~GikQyv~~~~s~nnsveemrlk 259 (980)
T KOG4284|consen 182 TESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV--QLFGIKQYVVAKCSPNNSVEEMRLK 259 (980)
T ss_pred hhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCc--eeechhheeeeccCCcchHHHHHHH
Confidence 5599999999999999999999999999999999999999998887755443 334456666554332 24
Q ss_pred HHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceecccc
Q 047890 689 ERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI 767 (1134)
Q Consensus 689 ~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDI 767 (1134)
...|..+++.+.. ..+||||+....|+-++..|.. ++.|.+|.|.|++++|..+++.++.-.++|||+||+.++|||-
T Consensus 260 lq~L~~vf~~ipy-~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa 338 (980)
T KOG4284|consen 260 LQKLTHVFKSIPY-VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDA 338 (980)
T ss_pred HHHHHHHHhhCch-HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCc
Confidence 5556666665543 5899999999999999999964 7999999999999999999999999999999999999999999
Q ss_pred CcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 768 KDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 768 p~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
+.+++|||+|.|.+.+.|.|||||+||.|.+|.+++|+.....
T Consensus 339 ~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 339 DNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999986654
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-43 Score=395.37 Aligned_cols=352 Identities=30% Similarity=0.463 Sum_probs=288.0
Q ss_pred hHHHHHHHcCCCCCCHHHHHHHHHHHc---------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 467 PRVASMHSAGFSSPTPIQAQTWPIALQ---------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 467 ~~l~~l~~~Gf~~prpiQ~eaI~~il~---------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.+...+..++++.++|+|..++++++. .+|+.+.||||||||++|.+||+.+|.... -...++|||+|
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~---v~~LRavVivP 223 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP---VKRLRAVVIVP 223 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC---ccceEEEEEee
Confidence 346778899999999999999999974 379999999999999999999999886432 23468999999
Q ss_pred cHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCC-----CcEEEeChHHHHHHHH-hcccCCCCeEEEEEcc
Q 047890 538 TRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQG-----ADIVVATPGRLNDILE-MKKIDFGQVSLLVLDE 611 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~-----~dIIVaTPerL~~lL~-~~~l~l~~l~lVVIDE 611 (1134)
|++|+.|++++|.+|....++.++.+.|..+...+.+.|... .||||+||++|.++|. .+.++|.++.++||||
T Consensus 224 tr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDE 303 (620)
T KOG0350|consen 224 TRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDE 303 (620)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEech
Confidence 999999999999999999999999998888777777766543 4899999999999998 6778999999999999
Q ss_pred hhhhhccCchHHHHHHHHhCC----------------------------------CCceEEEEeccCchhHHHHHHhhcc
Q 047890 612 ADRMLDMGFEPQIRKIVNEMP----------------------------------PHRQTLMYTATWPKDVRKIASDLLV 657 (1134)
Q Consensus 612 AHrll~~gf~~~i~~IL~~l~----------------------------------~~~qiLllSATl~~~v~~l~~~~l~ 657 (1134)
||||++..|..++..++..+. +....|++|||+..+..++...-+.
T Consensus 304 ADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~ 383 (620)
T KOG0350|consen 304 ADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH 383 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC
Confidence 999998776666555433221 1223678888888777777776666
Q ss_pred CCeeeeecc--chhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhc-----CCCcEEE
Q 047890 658 NPVQVNIGN--VDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIG-----RNFGAIA 730 (1134)
Q Consensus 658 ~~~~i~i~~--~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~-----~~~~v~~ 730 (1134)
.|..+.+.. .........+.+...++....+...+..++... ...++|+|+++...+.+|+..|+ -++.+..
T Consensus 384 ~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~ 462 (620)
T KOG0350|consen 384 IPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSE 462 (620)
T ss_pred CCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhhh
Confidence 664433322 112222334445555555556666666666654 45799999999999999998885 2456777
Q ss_pred ecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 731 IHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 731 LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
+.|.++.+.|.+.+++|+.|++.||||||+++||||+.++++||+||+|.+...|+||+||++|+|+.|.||.++...+.
T Consensus 463 ~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 463 FTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred hhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 047890 811 KYAADLVKVLEG 822 (1134)
Q Consensus 811 ~~~~~l~k~L~~ 822 (1134)
..+.++++....
T Consensus 543 r~F~klL~~~~~ 554 (620)
T KOG0350|consen 543 RLFSKLLKKTNL 554 (620)
T ss_pred hHHHHHHHHhcc
Confidence 888888777654
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.7e-42 Score=409.75 Aligned_cols=326 Identities=25% Similarity=0.390 Sum_probs=250.0
Q ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 474 SAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 474 ~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.+||.+|||+|.++|+.+++++|+|+++|||+|||++|++|++. ....+|||+|+++|+.|+++.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~----------~~~~~lVi~P~~~L~~dq~~~l~~~- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC----------SDGITLVISPLISLMEDQVLQLKAS- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH----------cCCcEEEEecHHHHHHHHHHHHHHc-
Confidence 36999999999999999999999999999999999999999874 2347999999999999999999875
Q ss_pred cCCCCceEEecCCCCCchhH---Hhh-cCCCcEEEeChHHHHHHH-Hhccc-CCCCeEEEEEcchhhhhccC--chHHHH
Q 047890 554 RSSRLSCTCLYGGAPKGPQL---REL-DQGADIVVATPGRLNDIL-EMKKI-DFGQVSLLVLDEADRMLDMG--FEPQIR 625 (1134)
Q Consensus 554 ~~~~i~v~~l~GG~~~~~~l---~~l-~~~~dIIVaTPerL~~lL-~~~~l-~l~~l~lVVIDEAHrll~~g--f~~~i~ 625 (1134)
++.+..+.++....... ..+ ....+|||+||++|.... ....+ .+.++++|||||||++.+|+ |...+.
T Consensus 75 ---gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 75 ---GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 45666666665443221 222 234799999999975432 11122 56789999999999999886 666665
Q ss_pred HH--HHhCCCCceEEEEeccCchhHHHHHHhhc--cCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhc
Q 047890 626 KI--VNEMPPHRQTLMYTATWPKDVRKIASDLL--VNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQER 701 (1134)
Q Consensus 626 ~I--L~~l~~~~qiLllSATl~~~v~~l~~~~l--~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~ 701 (1134)
.+ +....+..+++++|||++..+.+.+...+ .++..+.. ..+ ..++...+.... ......+..++.....
T Consensus 152 ~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~~----r~nl~~~v~~~~-~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 152 ALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SFD----RPNLYYEVRRKT-PKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CCC----CCCcEEEEEeCC-ccHHHHHHHHHHHhcC
Confidence 54 22333567899999999988765544443 23322221 111 111211111111 1233344455544445
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCC
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPN 780 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~ 780 (1134)
++++||||++++.++.|++.|.+ ++.+..+|++|+.++|.+++++|++|+++|||||+++++|||+++|++||++++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 67789999999999999999954 68899999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHH
Q 047890 781 GVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKV 819 (1134)
Q Consensus 781 s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~ 819 (1134)
+.+.|+||+||+||+|..+.|++|+...|......++..
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 999999999999999999999999999888766666543
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.1e-42 Score=425.91 Aligned_cols=325 Identities=23% Similarity=0.360 Sum_probs=250.9
Q ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 474 SAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 474 ~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.+||..+||+|.++|+.++.++|+|+++|||+|||+||++|++.. ...+|||+|+++|+.++...+...
T Consensus 455 ~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----------~GiTLVISPLiSLmqDQV~~L~~~- 523 (1195)
T PLN03137 455 VFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----------PGITLVISPLVSLIQDQIMNLLQA- 523 (1195)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----------CCcEEEEeCHHHHHHHHHHHHHhC-
Confidence 369999999999999999999999999999999999999998752 347999999999998666666553
Q ss_pred cCCCCceEEecCCCCCchhHHhhc------CCCcEEEeChHHHHH--HHHhc--cc-CCCCeEEEEEcchhhhhccC--c
Q 047890 554 RSSRLSCTCLYGGAPKGPQLRELD------QGADIVVATPGRLND--ILEMK--KI-DFGQVSLLVLDEADRMLDMG--F 620 (1134)
Q Consensus 554 ~~~~i~v~~l~GG~~~~~~l~~l~------~~~dIIVaTPerL~~--lL~~~--~l-~l~~l~lVVIDEAHrll~~g--f 620 (1134)
++.+..+.++....+....+. ...+|||+||++|.. .+... .+ ....+.+|||||||++++|+ |
T Consensus 524 ---GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDF 600 (1195)
T PLN03137 524 ---NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 600 (1195)
T ss_pred ---CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccch
Confidence 577788888776554433322 358999999999863 12111 11 23458899999999999987 7
Q ss_pred hHHHHHH--HHhCCCCceEEEEeccCchhHHHHHHhhccCC-eeeeeccchhhhcccceeeEEEecchhHH-HHHHHHHH
Q 047890 621 EPQIRKI--VNEMPPHRQTLMYTATWPKDVRKIASDLLVNP-VQVNIGNVDELAANKAITQHVEVVPQMEK-ERRLQQIL 696 (1134)
Q Consensus 621 ~~~i~~I--L~~l~~~~qiLllSATl~~~v~~l~~~~l~~~-~~i~i~~~d~l~~~~~i~~~~~~v~~~ek-~~~L~~ll 696 (1134)
.+.+..+ +....+..++++||||++..+.+.+...+.-. ..+.....+ ..++ .+.++....+ ...|..++
T Consensus 601 RpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~----RpNL--~y~Vv~k~kk~le~L~~~I 674 (1195)
T PLN03137 601 RPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN----RPNL--WYSVVPKTKKCLEDIDKFI 674 (1195)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC----ccce--EEEEeccchhHHHHHHHHH
Confidence 7777653 44444677899999999998887555444221 111111111 1122 2222322221 23444455
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN 775 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~ 775 (1134)
+....+...||||++++.|+.|+..|. .++.+..+|++|+.++|..++++|.+|+++|||||+++++|||+++|++|||
T Consensus 675 ~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH 754 (1195)
T PLN03137 675 KENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 754 (1195)
T ss_pred HhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE
Confidence 443345689999999999999999985 4788999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHH
Q 047890 776 YDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVK 818 (1134)
Q Consensus 776 ~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k 818 (1134)
|++|.+++.|+|++||+||+|..+.|++|+...|......+++
T Consensus 755 ydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 755 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred cCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 9999999999999999999999999999998877766555553
No 38
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-42 Score=397.68 Aligned_cols=370 Identities=34% Similarity=0.518 Sum_probs=310.7
Q ss_pred cchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcC-CCCCCCEEEEEcccHHHH
Q 047890 464 ATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN-NPRNGPTVLVLAPTRELA 542 (1134)
Q Consensus 464 v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~-~~~~g~kvLVLvPTreLa 542 (1134)
....++..+...+|..|+|+|++|++.++..+++|.+||||+|||++|++|++..|+.... ....+.+++||.||++|+
T Consensus 143 ~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa 222 (593)
T KOG0344|consen 143 MNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELA 222 (593)
T ss_pred hcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHH
Confidence 3445688999999999999999999999999999999999999999999999998876542 123577999999999999
Q ss_pred HHHHHHHHHhc--cCCCCceEEecCCCCCchhHH-hhcCCCcEEEeChHHHHHHHHhcc--cCCCCeEEEEEcchhhhhc
Q 047890 543 TQIQDEANKFG--RSSRLSCTCLYGGAPKGPQLR-ELDQGADIVVATPGRLNDILEMKK--IDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 543 ~Q~~~el~kl~--~~~~i~v~~l~GG~~~~~~l~-~l~~~~dIIVaTPerL~~lL~~~~--l~l~~l~lVVIDEAHrll~ 617 (1134)
.|++.++.++. ....+.+..+........... .....++|+|.||-+|..++.... +++..+.++|+||+|++.+
T Consensus 223 ~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe 302 (593)
T KOG0344|consen 223 AQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFE 302 (593)
T ss_pred HHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhC
Confidence 99999999998 444444433332221111111 112347999999999999987765 7889999999999999999
Q ss_pred c-CchHHHHHHHHhCC-CCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceee-EEEecchhHHHHHHHH
Q 047890 618 M-GFEPQIRKIVNEMP-PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQ-HVEVVPQMEKERRLQQ 694 (1134)
Q Consensus 618 ~-gf~~~i~~IL~~l~-~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~-~~~~v~~~ek~~~L~~ 694 (1134)
. .|..++..|+..+. ++..+-+||||++..++++++....+.+.+.++..+.. ...+.+ .+.......|...+..
T Consensus 303 ~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa--~~~V~QelvF~gse~~K~lA~rq 380 (593)
T KOG0344|consen 303 PEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA--NETVDQELVFCGSEKGKLLALRQ 380 (593)
T ss_pred hhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH--hhhhhhhheeeecchhHHHHHHH
Confidence 8 88999999887764 55678899999999999999999999888888765443 223333 3344555667777777
Q ss_pred HHHHHhcCCEEEEEeCcHHHHHHHHHHhc--CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceE
Q 047890 695 ILRAQERGSRVIIFCSTKRLCDQLARSIG--RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772 (1134)
Q Consensus 695 llk~~~~~~kvLVF~nT~~~ae~La~~L~--~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~ 772 (1134)
++... -...+|||+.+++.|..|+..|. .++.+.++||+.++.+|++++++|+.|+++|||||+++++|||+.++++
T Consensus 381 ~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~ 459 (593)
T KOG0344|consen 381 LVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNL 459 (593)
T ss_pred HHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcce
Confidence 77654 45789999999999999999984 4678999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHh
Q 047890 773 VINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMAL 836 (1134)
Q Consensus 773 VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~ 836 (1134)
|||||+|.+...|+||+||+||+|+.|.+++||...|...+..+.+.++..+.++++++..+..
T Consensus 460 VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 460 VINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIKK 523 (593)
T ss_pred EEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999887763
No 39
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.6e-40 Score=414.57 Aligned_cols=354 Identities=21% Similarity=0.274 Sum_probs=274.4
Q ss_pred HHHHHH-cCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH
Q 047890 469 VASMHS-AGFSSPTPIQAQTWPIALQG------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL 541 (1134)
Q Consensus 469 l~~l~~-~Gf~~prpiQ~eaI~~il~g------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL 541 (1134)
+..+.. .+| +||++|.+||+.++.+ .|+|++++||+|||++|+++++..+. .+.++||||||++|
T Consensus 441 ~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-------~g~qvlvLvPT~~L 512 (926)
T TIGR00580 441 QQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-------DGKQVAVLVPTTLL 512 (926)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-------hCCeEEEEeCcHHH
Confidence 444444 477 4999999999999985 79999999999999999999887765 35789999999999
Q ss_pred HHHHHHHHHHhccCCCCceEEecCCCCCch---hHHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 542 ATQIQDEANKFGRSSRLSCTCLYGGAPKGP---QLRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 542 a~Q~~~el~kl~~~~~i~v~~l~GG~~~~~---~l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
|.|+++.|++++....+.+.+++++....+ .+..+.. .++|||+||..| ...+.+.++++|||||+|++
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf-- 585 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF-- 585 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc--
Confidence 999999999988877888888887765333 2333444 489999999433 34567889999999999993
Q ss_pred cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHH
Q 047890 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR 697 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk 697 (1134)
....+..+..+....++|+||||+.+....+....+.+...+...... ...+..++... +.......+++
T Consensus 586 ---gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~----R~~V~t~v~~~---~~~~i~~~i~~ 655 (926)
T TIGR00580 586 ---GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED----RLPVRTFVMEY---DPELVREAIRR 655 (926)
T ss_pred ---chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC----ccceEEEEEec---CHHHHHHHHHH
Confidence 445566677777889999999997666555544444444433322111 11222222211 12223344555
Q ss_pred HHhcCCEEEEEeCcHHHHHHHHHHhcC---CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEE
Q 047890 698 AQERGSRVIIFCSTKRLCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI 774 (1134)
Q Consensus 698 ~~~~~~kvLVF~nT~~~ae~La~~L~~---~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI 774 (1134)
.+..+.+++|||++++.++.+++.|.+ ++.+..+||+|+.++|++++++|++|+++|||||+++++|||+|++++||
T Consensus 656 el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI 735 (926)
T TIGR00580 656 ELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII 735 (926)
T ss_pred HHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE
Confidence 666788999999999999999999976 57899999999999999999999999999999999999999999999999
Q ss_pred eecCCC-ChhhHHHhhhccCcCCCcceeEEEecccc--hHHHHHHHHHHHhhcC---CCCHHHHHHHhhcCCC--CcccC
Q 047890 775 NYDFPN-GVEDYVHRIGRTGRAGATGVAHTFFSEQD--SKYAADLVKVLEGANQ---HVPPEVRDMALRCGPG--FGKDR 846 (1134)
Q Consensus 775 ~~d~P~-s~~~yiQRiGRagR~GqkG~~ii~~~~~d--~~~~~~l~k~L~~~~~---~lp~~l~dla~r~g~g--~Gk~~ 846 (1134)
+++.+. +..+|+|++||+||.|++|.|++++...+ .+...+.++.|++... .+..+..||.+| |.| +|..+
T Consensus 736 i~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~R-g~G~~lG~~Q 814 (926)
T TIGR00580 736 IERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIR-GAGNLLGEEQ 814 (926)
T ss_pred EecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhc-CCcCCCCCcc
Confidence 999865 67899999999999999999999987643 3555666677776655 899999999999 444 55444
Q ss_pred CC
Q 047890 847 GG 848 (1134)
Q Consensus 847 gG 848 (1134)
.|
T Consensus 815 sG 816 (926)
T TIGR00580 815 SG 816 (926)
T ss_pred cC
Confidence 44
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8.8e-40 Score=401.89 Aligned_cols=321 Identities=25% Similarity=0.408 Sum_probs=247.2
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+||..++|+|.++|+.++.++|+|+++|||+|||++|++|++.. ...+|||+|+++|+.|+.+.+..+
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----------~g~tlVisPl~sL~~dqv~~l~~~-- 88 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----------DGLTLVVSPLISLMKDQVDQLLAN-- 88 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----------CCCEEEEecHHHHHHHHHHHHHHc--
Confidence 69999999999999999999999999999999999999998742 236999999999999999999876
Q ss_pred CCCCceEEecCCCCCchhHH---hhc-CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC--chHHHHHH-
Q 047890 555 SSRLSCTCLYGGAPKGPQLR---ELD-QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG--FEPQIRKI- 627 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~---~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g--f~~~i~~I- 627 (1134)
++.+.++.+......... .+. ...+|+++||++|........+...++++|||||||++.+|+ |.+.+..+
T Consensus 89 --gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~ 166 (607)
T PRK11057 89 --GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALG 166 (607)
T ss_pred --CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHH
Confidence 356666666554433322 222 347899999999874333333445578999999999999876 66655443
Q ss_pred -HHhCCCCceEEEEeccCchhHHHHHHhhc--cCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCE
Q 047890 628 -VNEMPPHRQTLMYTATWPKDVRKIASDLL--VNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR 704 (1134)
Q Consensus 628 -L~~l~~~~qiLllSATl~~~v~~l~~~~l--~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~k 704 (1134)
+....+..+++++|||++..+...+...+ .++. +.+...+. .++ .+.++....+...+..++.. ..+.+
T Consensus 167 ~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~-~~~~~~~r----~nl--~~~v~~~~~~~~~l~~~l~~-~~~~~ 238 (607)
T PRK11057 167 QLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPL-IQISSFDR----PNI--RYTLVEKFKPLDQLMRYVQE-QRGKS 238 (607)
T ss_pred HHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeE-EEECCCCC----Ccc--eeeeeeccchHHHHHHHHHh-cCCCC
Confidence 22233567899999999988765443332 2332 22222111 111 22222222233334444433 34678
Q ss_pred EEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChh
Q 047890 705 VIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVE 783 (1134)
Q Consensus 705 vLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~ 783 (1134)
+||||+|++.|+.+++.|.+ ++.+..+|++|+.++|.++++.|++|+++|||||+++++|||+++|++||+||+|.+.+
T Consensus 239 ~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~ 318 (607)
T PRK11057 239 GIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIE 318 (607)
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHH
Confidence 99999999999999999954 68899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCcCCCcceeEEEecccchHHHHHHH
Q 047890 784 DYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLV 817 (1134)
Q Consensus 784 ~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~ 817 (1134)
.|+|++||+||.|..+.|++|++..|......++
T Consensus 319 ~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 319 SYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred HHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999988876655544
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1e-39 Score=414.63 Aligned_cols=340 Identities=20% Similarity=0.268 Sum_probs=250.3
Q ss_pred hhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCC--CCCCCEEEEEcccHHHHH
Q 047890 466 LPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN--PRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 466 ~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~--~~~g~kvLVLvPTreLa~ 543 (1134)
.+.+..+...+|..||++|++||+.+++++++|++||||||||++|++|++..+...... ...+.++|||+|+++|+.
T Consensus 19 ~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~ 98 (876)
T PRK13767 19 RPYVREWFKEKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNN 98 (876)
T ss_pred CHHHHHHHHHccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHH
Confidence 356778888899999999999999999999999999999999999999999877543211 134678999999999999
Q ss_pred HHHHHHHH-------h----ccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc--CCCCeEEEEE
Q 047890 544 QIQDEANK-------F----GRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI--DFGQVSLLVL 609 (1134)
Q Consensus 544 Q~~~el~k-------l----~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l--~l~~l~lVVI 609 (1134)
|+++.+.. + +... .+.+.+.+|+.........+.+.++|||+||++|..++....+ .+.++++|||
T Consensus 99 di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 99 DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 99876542 2 2233 6778888999887777667777899999999999888765443 4788999999
Q ss_pred cchhhhhccCchHHHHHHH----HhCCCCceEEEEeccCchhHHHHHHhhccC-----CeeeeeccchhhhcccceeeE-
Q 047890 610 DEADRMLDMGFEPQIRKIV----NEMPPHRQTLMYTATWPKDVRKIASDLLVN-----PVQVNIGNVDELAANKAITQH- 679 (1134)
Q Consensus 610 DEAHrll~~gf~~~i~~IL----~~l~~~~qiLllSATl~~~v~~l~~~~l~~-----~~~i~i~~~d~l~~~~~i~~~- 679 (1134)
||||.+++..+...+..++ .......|+|++|||+.+ ..+++..+... ...+.+..... .....+...
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~-~k~~~i~v~~ 256 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARF-VKPFDIKVIS 256 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCC-CccceEEEec
Confidence 9999999776555444333 333467899999999864 33444333211 11111110000 000000000
Q ss_pred --EEe--cchhH-HHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-------CCcEEEecCCCChhHHHHHHHHH
Q 047890 680 --VEV--VPQME-KERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-------NFGAIAIHGDKSQGERDWVLNQF 747 (1134)
Q Consensus 680 --~~~--v~~~e-k~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-------~~~v~~LhG~ms~~eR~~il~~F 747 (1134)
... ..... ....+..+.+.+...+++||||||+..|+.++..|.+ ...+..+||+++.++|..+++.|
T Consensus 257 p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~f 336 (876)
T PRK13767 257 PVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKL 336 (876)
T ss_pred cCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHH
Confidence 000 01111 1222333344445678999999999999999999865 25689999999999999999999
Q ss_pred hcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcC-CCcceeEEEecc
Q 047890 748 RSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRA-GATGVAHTFFSE 807 (1134)
Q Consensus 748 rsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~-GqkG~~ii~~~~ 807 (1134)
++|+++|||||+++++||||+++++||+++.|.+...|+||+||+||. |....++++...
T Consensus 337 k~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 337 KRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999999999999999999999986 444445444443
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-39 Score=400.03 Aligned_cols=320 Identities=25% Similarity=0.412 Sum_probs=252.3
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+||.+++++|.++|+.++.++|+|+++|||+|||++|++|++.. ...+|||+|+++|+.|+.+.++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----------~g~~lVisPl~sL~~dq~~~l~~~-- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----------KGLTVVISPLISLMKDQVDQLRAA-- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----------CCcEEEEcCCHHHHHHHHHHHHHc--
Confidence 79999999999999999999999999999999999999998742 336899999999999999999886
Q ss_pred CCCCceEEecCCCCCchhHH---hh-cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC--chHHHHHHH
Q 047890 555 SSRLSCTCLYGGAPKGPQLR---EL-DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG--FEPQIRKIV 628 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~---~l-~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g--f~~~i~~IL 628 (1134)
++.+..+.++....+... .+ ....+|+++||++|........+...++++|||||||++.+|+ |.+.+..+.
T Consensus 77 --gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~ 154 (591)
T TIGR01389 77 --GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLG 154 (591)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHH
Confidence 466777776655443222 22 3458999999999976554455566789999999999999876 666665543
Q ss_pred ---HhCCCCceEEEEeccCchhHHHHHHhhcc--CCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCC
Q 047890 629 ---NEMPPHRQTLMYTATWPKDVRKIASDLLV--NPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGS 703 (1134)
Q Consensus 629 ---~~l~~~~qiLllSATl~~~v~~l~~~~l~--~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~ 703 (1134)
..++ ...+|++|||++..+...+...+. ++..+ +...+ ..++ .+.+.....+...+.+++.... +.
T Consensus 155 ~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~~----r~nl--~~~v~~~~~~~~~l~~~l~~~~-~~ 225 (591)
T TIGR01389 155 SLAERFP-QVPRIALTATADAETRQDIRELLRLADANEF-ITSFD----RPNL--RFSVVKKNNKQKFLLDYLKKHR-GQ 225 (591)
T ss_pred HHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCCC----CCCc--EEEEEeCCCHHHHHHHHHHhcC-CC
Confidence 3343 445999999999888765555443 22211 11111 1112 2223333445555666665433 67
Q ss_pred EEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCCh
Q 047890 704 RVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGV 782 (1134)
Q Consensus 704 kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~ 782 (1134)
++||||+|++.++.|++.|. .++.+..+|++|+.++|..+++.|.+|+++|||||+++++|||+++|++||++++|.+.
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 89999999999999999995 46889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccCcCCCcceeEEEecccchHHHHHHH
Q 047890 783 EDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLV 817 (1134)
Q Consensus 783 ~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~ 817 (1134)
+.|+|++||+||+|..+.|++|+...|......++
T Consensus 306 ~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 306 ESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred HHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999888776555444
No 43
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.6e-39 Score=398.30 Aligned_cols=351 Identities=24% Similarity=0.355 Sum_probs=267.9
Q ss_pred cCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHH
Q 047890 475 AGFSSPTPIQAQTWPIALQG------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDE 548 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~g------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~e 548 (1134)
.+| +||++|++||+.++.+ .++|++++||||||++|+++++..+. .+.++|||+||++||.|+++.
T Consensus 258 l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-------~g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 258 LPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-------AGYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred CCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEeccHHHHHHHHHH
Confidence 456 5999999999999987 47999999999999999999988765 467999999999999999999
Q ss_pred HHHhccCCCCceEEecCCCCCch---hHHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHH
Q 047890 549 ANKFGRSSRLSCTCLYGGAPKGP---QLRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQI 624 (1134)
Q Consensus 549 l~kl~~~~~i~v~~l~GG~~~~~---~l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i 624 (1134)
+++++...++++.+++|+..... .+..+.. .++|||+|+..|.+ .+.+.++++|||||+|++. ...
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg-----~~q 399 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFG-----VEQ 399 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhh-----HHH
Confidence 99999888899999999886433 3334444 49999999987743 3457889999999999853 333
Q ss_pred HHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhc-ccceeeEEEecchhHHHHHHHHHHHHHhcCC
Q 047890 625 RKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAA-NKAITQHVEVVPQMEKERRLQQILRAQERGS 703 (1134)
Q Consensus 625 ~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~-~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~ 703 (1134)
+..+.......++|+||||+.+....+.. ..+.....+ ++... ...+... ++........+..+.+.+..+.
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i---~~~p~~r~~i~~~--~~~~~~~~~~~~~i~~~~~~g~ 472 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVI---DELPPGRKPITTV--VIPDSRRDEVYERIREEIAKGR 472 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEE---ecCCCCCCCcEEE--EeCcccHHHHHHHHHHHHHcCC
Confidence 44454555567899999997554433322 222111111 11111 1122222 2233333444556666667788
Q ss_pred EEEEEeCcHH--------HHHHHHHHhcC---CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceE
Q 047890 704 RVIIFCSTKR--------LCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772 (1134)
Q Consensus 704 kvLVF~nT~~--------~ae~La~~L~~---~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~ 772 (1134)
+++|||++++ .++.+++.|.+ .+.+..+||+|+.++|++++++|++|+++|||||+++++|||+|++++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~ 552 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATV 552 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcE
Confidence 9999998643 34555666644 357999999999999999999999999999999999999999999999
Q ss_pred EEeecCCC-ChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhhcCCC--CcccCCCC
Q 047890 773 VINYDFPN-GVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPG--FGKDRGGV 849 (1134)
Q Consensus 773 VI~~d~P~-s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r~g~g--~Gk~~gG~ 849 (1134)
||+++.|. ....|+|++||+||.|.+|.|++++...........++.++...+.+.....|+..| |+| +|..+.|.
T Consensus 553 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~r-g~g~~~g~~q~g~ 631 (681)
T PRK10917 553 MVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLELR-GPGELLGTRQSGL 631 (681)
T ss_pred EEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHhhC-CCccccCceecCC
Confidence 99999987 578899999999999999999999975555566777888888888999999999998 554 55555554
Q ss_pred cc
Q 047890 850 SR 851 (1134)
Q Consensus 850 ~R 851 (1134)
..
T Consensus 632 ~~ 633 (681)
T PRK10917 632 PE 633 (681)
T ss_pred CC
Confidence 33
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=8.1e-39 Score=394.94 Aligned_cols=357 Identities=23% Similarity=0.317 Sum_probs=267.9
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHH
Q 047890 470 ASMHSAGFSSPTPIQAQTWPIALQG------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 470 ~~l~~~Gf~~prpiQ~eaI~~il~g------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~ 543 (1134)
.-+...+| +||++|++||+.++.+ .+.|++++||||||++|+++++..+. .+.++|||+||++||.
T Consensus 227 ~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-------~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 227 KFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-------AGYQVALMAPTEILAE 298 (630)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------cCCcEEEECCHHHHHH
Confidence 34456688 6999999999999976 25899999999999999999888765 4678999999999999
Q ss_pred HHHHHHHHhccCCCCceEEecCCCCCch---hHHhhc-CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC
Q 047890 544 QIQDEANKFGRSSRLSCTCLYGGAPKGP---QLRELD-QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG 619 (1134)
Q Consensus 544 Q~~~el~kl~~~~~i~v~~l~GG~~~~~---~l~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g 619 (1134)
|+++.+++++...++++.+++|+..... .+..+. ..++|||+|+..|.+ .+.+.++++|||||+|++...
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~- 372 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE- 372 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-
Confidence 9999999998888899999999876544 233333 347999999987754 356788999999999985321
Q ss_pred chHHHHHHHHhCC--CCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcc-cceeeEEEecchhHHHHHHHHHH
Q 047890 620 FEPQIRKIVNEMP--PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAAN-KAITQHVEVVPQMEKERRLQQIL 696 (1134)
Q Consensus 620 f~~~i~~IL~~l~--~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~-~~i~~~~~~v~~~ek~~~L~~ll 696 (1134)
....++.... ...++|+||||+.+....+.. ..+. .+...+..... ..+... ++....+...+..+.
T Consensus 373 ---qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l---~~~~i~~~p~~r~~i~~~--~~~~~~~~~~~~~i~ 442 (630)
T TIGR00643 373 ---QRKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDL---DTSIIDELPPGRKPITTV--LIKHDEKDIVYEFIE 442 (630)
T ss_pred ---HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCc---ceeeeccCCCCCCceEEE--EeCcchHHHHHHHHH
Confidence 2222222222 257899999996554333221 1111 11111111111 112222 223333345555566
Q ss_pred HHHhcCCEEEEEeCcH--------HHHHHHHHHhcC---CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceecc
Q 047890 697 RAQERGSRVIIFCSTK--------RLCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~--------~~ae~La~~L~~---~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GL 765 (1134)
+.+..+.+++|||+.. ..++.+++.|.+ ++.+..+||+|+.++|++++++|++|+++|||||+++++||
T Consensus 443 ~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gv 522 (630)
T TIGR00643 443 EEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGV 522 (630)
T ss_pred HHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCc
Confidence 6667788999999875 345566666643 56799999999999999999999999999999999999999
Q ss_pred ccCcceEEEeecCCC-ChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhhcCCC--C
Q 047890 766 DIKDIRVVINYDFPN-GVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPG--F 842 (1134)
Q Consensus 766 DIp~v~~VI~~d~P~-s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r~g~g--~ 842 (1134)
|+|++++||+++.+. +...|.|++||+||.|++|.|++++.........+.++.+....+.+.....|+..| |+| +
T Consensus 523 DiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~R-g~g~~~ 601 (630)
T TIGR00643 523 DVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLELR-GPGDLL 601 (630)
T ss_pred ccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhcC-CCcccC
Confidence 999999999999986 678899999999999999999999955555566667788888888999999999998 555 6
Q ss_pred cccCCCCcc
Q 047890 843 GKDRGGVSR 851 (1134)
Q Consensus 843 Gk~~gG~~R 851 (1134)
|..+.|...
T Consensus 602 g~~QsG~~~ 610 (630)
T TIGR00643 602 GTKQSGYPE 610 (630)
T ss_pred CCcccCCCc
Confidence 666655443
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.8e-39 Score=411.60 Aligned_cols=340 Identities=21% Similarity=0.218 Sum_probs=266.8
Q ss_pred HHcCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHH
Q 047890 473 HSAGFSSPTPIQAQTWPIALQG------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQ 546 (1134)
Q Consensus 473 ~~~Gf~~prpiQ~eaI~~il~g------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~ 546 (1134)
....| +||++|.+||+.++.+ +|+|++++||+|||++|+.+++..+. .+.++||||||++||.|++
T Consensus 595 ~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-------~g~qvlvLvPT~eLA~Q~~ 666 (1147)
T PRK10689 595 DSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-------NHKQVAVLVPTTLLAQQHY 666 (1147)
T ss_pred HhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-------cCCeEEEEeCcHHHHHHHH
Confidence 34466 6999999999999987 89999999999999999888776653 4679999999999999999
Q ss_pred HHHHHhccCCCCceEEecCCCCCchhHHh---hc-CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchH
Q 047890 547 DEANKFGRSSRLSCTCLYGGAPKGPQLRE---LD-QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEP 622 (1134)
Q Consensus 547 ~el~kl~~~~~i~v~~l~GG~~~~~~l~~---l~-~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~ 622 (1134)
+.|++++....+.+.+++++....+.... +. ..++|||+||+.|. ..+.+.++++|||||+|++. +
T Consensus 667 ~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG---~-- 736 (1147)
T PRK10689 667 DNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG---V-- 736 (1147)
T ss_pred HHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc---h--
Confidence 99998777667888888877665544433 22 35899999996442 34567889999999999962 2
Q ss_pred HHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcC
Q 047890 623 QIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERG 702 (1134)
Q Consensus 623 ~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~ 702 (1134)
.....+..++.++++|+||||+.+.+..++...+.++..+....... ..+...+.... .......+++.+..+
T Consensus 737 ~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r----~~v~~~~~~~~---~~~~k~~il~el~r~ 809 (1147)
T PRK10689 737 RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR----LAVKTFVREYD---SLVVREAILREILRG 809 (1147)
T ss_pred hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC----CCceEEEEecC---cHHHHHHHHHHHhcC
Confidence 23455677788899999999988877777777777766554322111 12222222211 122234555566667
Q ss_pred CEEEEEeCcHHHHHHHHHHhcC---CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCC
Q 047890 703 SRVIIFCSTKRLCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFP 779 (1134)
Q Consensus 703 ~kvLVF~nT~~~ae~La~~L~~---~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P 779 (1134)
.+++||||+++.++.+++.|.+ ++.+.++||+|+.++|++++.+|++|+++|||||+++++||||+++++||+.+..
T Consensus 810 gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad 889 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC
Confidence 8999999999999999998865 4679999999999999999999999999999999999999999999999966543
Q ss_pred -CChhhHHHhhhccCcCCCcceeEEEeccc--chHHHHHHHHHHHhhcC---CCCHHHHHHHhh
Q 047890 780 -NGVEDYVHRIGRTGRAGATGVAHTFFSEQ--DSKYAADLVKVLEGANQ---HVPPEVRDMALR 837 (1134)
Q Consensus 780 -~s~~~yiQRiGRagR~GqkG~~ii~~~~~--d~~~~~~l~k~L~~~~~---~lp~~l~dla~r 837 (1134)
.+...|+|++||+||.|++|.|++++... -.....+.++.|++..+ .+..++.||.+|
T Consensus 890 ~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~r 953 (1147)
T PRK10689 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 (1147)
T ss_pred CCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Confidence 36678999999999999999999988653 24455666677776665 899999999999
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-39 Score=403.84 Aligned_cols=334 Identities=23% Similarity=0.324 Sum_probs=256.5
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPI-ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~-il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
+.++.++..+++.+.+.||.+|+|+|.+|++. ++.++++|++||||||||++|.++++..+. .+.++|||+|
T Consensus 3 ~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-------~~~kal~i~P 75 (737)
T PRK02362 3 IAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-------RGGKALYIVP 75 (737)
T ss_pred hhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-------cCCcEEEEeC
Confidence 34556778889999999999999999999998 778999999999999999999999988774 3568999999
Q ss_pred cHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 538 TRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
+++||.|+++.|+++.. .++++..++|+...... .....+|||+||+++..++......+.++++|||||+|.+.+
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d 151 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDS 151 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCC
Confidence 99999999999998753 47888888887654332 234579999999999998876656678999999999999998
Q ss_pred cCchHHHHHHHHhC---CCCceEEEEeccCchhHHHHHHhhccC-------Ceeeeec--cchhhhcccceeeEEEecch
Q 047890 618 MGFEPQIRKIVNEM---PPHRQTLMYTATWPKDVRKIASDLLVN-------PVQVNIG--NVDELAANKAITQHVEVVPQ 685 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l---~~~~qiLllSATl~~~v~~l~~~~l~~-------~~~i~i~--~~d~l~~~~~i~~~~~~v~~ 685 (1134)
.++...+..++..+ ....|+|++|||++. ..++..++-.. ++.+... ....+. .......+..
T Consensus 152 ~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~----~~~~~~~~~~ 226 (737)
T PRK02362 152 ANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIH----FDDSQREVEV 226 (737)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeec----cccccccCCC
Confidence 88887777766544 467899999999864 34444333211 1111100 000000 0000001111
Q ss_pred hHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCC-------------------------------------CcE
Q 047890 686 MEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-------------------------------------FGA 728 (1134)
Q Consensus 686 ~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~-------------------------------------~~v 728 (1134)
..+...+..+++.+..+.++||||+|++.|+.+++.|... .++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 227 PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 1123334444445557789999999999998888776321 357
Q ss_pred EEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe----ec-----CCCChhhHHHhhhccCcCCCc-
Q 047890 729 IAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN----YD-----FPNGVEDYVHRIGRTGRAGAT- 798 (1134)
Q Consensus 729 ~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~----~d-----~P~s~~~yiQRiGRagR~Gqk- 798 (1134)
..+|++|+..+|..+++.|++|.++|||||+++++|||+|.+++||+ || .|.+..+|+||+||+||.|..
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~ 386 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDP 386 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 88999999999999999999999999999999999999999999997 66 577899999999999999865
Q ss_pred -ceeEEEeccc
Q 047890 799 -GVAHTFFSEQ 808 (1134)
Q Consensus 799 -G~~ii~~~~~ 808 (1134)
|.|++++...
T Consensus 387 ~G~~ii~~~~~ 397 (737)
T PRK02362 387 YGEAVLLAKSY 397 (737)
T ss_pred CceEEEEecCc
Confidence 8888888654
No 47
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.6e-38 Score=385.95 Aligned_cols=308 Identities=23% Similarity=0.303 Sum_probs=235.4
Q ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCC-EEEEEcccHHHHHHHHHHHHHh
Q 047890 475 AGFSSPTPIQAQTWPIALQGR-DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGP-TVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~gr-dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~-kvLVLvPTreLa~Q~~~el~kl 552 (1134)
.||+ |||||+++|+.++.|+ ++++.++||||||.+|++.++... .. ...+ ++|+++|||+|+.|++++++++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~----~~-~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE----IG-AKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc----cc-ccccceEEEeCchHHHHHHHHHHHHHH
Confidence 4888 9999999999999998 577789999999997654444221 11 1233 4555779999999999999998
Q ss_pred ccCC-----------------------CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc----------
Q 047890 553 GRSS-----------------------RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI---------- 599 (1134)
Q Consensus 553 ~~~~-----------------------~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l---------- 599 (1134)
+... .+.+.+++||.....+...+..+++|||+|+ +++....+
T Consensus 86 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~ 161 (844)
T TIGR02621 86 GERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKS 161 (844)
T ss_pred HHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccccccccc
Confidence 8644 4788999999999899999989999999995 44444443
Q ss_pred ------CCCCeEEEEEcchhhhhccCchHHHHHHHHhC--CC---CceEEEEeccCchhHHHHHHhhccCCeeeeeccch
Q 047890 600 ------DFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM--PP---HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVD 668 (1134)
Q Consensus 600 ------~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l--~~---~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d 668 (1134)
.+.++.+||||||| ++++|...+..|+..+ +. .+|+++||||++.++.++.+.++.++..+.+.. .
T Consensus 162 ~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~-~ 238 (844)
T TIGR02621 162 RPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK-K 238 (844)
T ss_pred ccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc-c
Confidence 26789999999999 6789999999999964 33 269999999999998888877777766555432 2
Q ss_pred hhhcccceeeEEEecchhHHHHHHHHHH-HH-HhcCCEEEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHH-----
Q 047890 669 ELAANKAITQHVEVVPQMEKERRLQQIL-RA-QERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERD----- 741 (1134)
Q Consensus 669 ~l~~~~~i~~~~~~v~~~ek~~~L~~ll-k~-~~~~~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~----- 741 (1134)
.+. ...+.++ ..+....+...+...+ .. ...+.++||||||++.|+.|++.|.+. .+..|||+|++.+|.
T Consensus 239 ~l~-a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-g~~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 239 RLA-AKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-KFELLTGTLRGAERDDLVKK 315 (844)
T ss_pred ccc-ccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-CCeEeeCCCCHHHHhhHHHH
Confidence 222 2233333 2233333332222222 11 234578999999999999999999653 238999999999999
Q ss_pred HHHHHHhc----CC-------CCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCccee
Q 047890 742 WVLNQFRS----GK-------SPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVA 801 (1134)
Q Consensus 742 ~il~~Frs----Ge-------~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ 801 (1134)
+++++|++ ++ ..|||||+++++||||+. ++||++..| .+.|+||+||++|.|+.+.+
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCc
Confidence 78999987 44 689999999999999986 888887765 69999999999999986433
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-37 Score=389.93 Aligned_cols=336 Identities=21% Similarity=0.267 Sum_probs=255.9
Q ss_pred cccccchhHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 460 HEVSATLPRVASMHSAGFSSPTPIQAQTWPI-ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 460 ~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~-il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
.++.+...+++.+.+.||.+|+++|.++++. ++.++++|+++|||||||++|.++++..+.. .+.++|||+|+
T Consensus 4 ~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~------~~~~~l~l~P~ 77 (720)
T PRK00254 4 DELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR------EGGKAVYLVPL 77 (720)
T ss_pred HHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh------cCCeEEEEeCh
Confidence 4556778889999999999999999999986 7899999999999999999999998876642 35689999999
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc
Q 047890 539 RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM 618 (1134)
Q Consensus 539 reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~ 618 (1134)
++|+.|+++.+.+|. ..++.+..++|+...... ....++|||+||++|..++......+.++++|||||+|.+.+.
T Consensus 78 ~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~ 153 (720)
T PRK00254 78 KALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY 153 (720)
T ss_pred HHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCc
Confidence 999999999999874 357888888887654322 2345899999999999988766667889999999999999988
Q ss_pred CchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcc-cceeeEEEecchh--HH--HHHHH
Q 047890 619 GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAAN-KAITQHVEVVPQM--EK--ERRLQ 693 (1134)
Q Consensus 619 gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~-~~i~~~~~~v~~~--ek--~~~L~ 693 (1134)
.+...+..++..+....|+|++|||++. ..++...+..... .. ........ ..+.......... .+ .....
T Consensus 154 ~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~-~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 154 DRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELV-VS--DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred cchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCccc-cC--CCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 8899999999999888999999999964 4555554322211 00 00000000 0000111111110 00 11112
Q ss_pred HHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC----------------------------------CCcEEEecCCCChhH
Q 047890 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR----------------------------------NFGAIAIHGDKSQGE 739 (1134)
Q Consensus 694 ~llk~~~~~~kvLVF~nT~~~ae~La~~L~~----------------------------------~~~v~~LhG~ms~~e 739 (1134)
.+.+.+..++++||||+|++.|+.++..|.+ ..++..+|++|+.++
T Consensus 230 ~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~e 309 (720)
T PRK00254 230 LVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTE 309 (720)
T ss_pred HHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHH
Confidence 2233344578999999999998877655521 125889999999999
Q ss_pred HHHHHHHHhcCCCCeeeecccceeccccCcceEEEe-------ecCCC-ChhhHHHhhhccCcCC--CcceeEEEecccc
Q 047890 740 RDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN-------YDFPN-GVEDYVHRIGRTGRAG--ATGVAHTFFSEQD 809 (1134)
Q Consensus 740 R~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~-------~d~P~-s~~~yiQRiGRagR~G--qkG~~ii~~~~~d 809 (1134)
|..+++.|++|.++|||||+++++|||+|.+++||. ++.+. ...+|+||+||+||.| ..|.+++++...+
T Consensus 310 R~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 310 RVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 999999999999999999999999999999999994 44443 4679999999999965 6799999887654
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=371.89 Aligned_cols=338 Identities=24% Similarity=0.290 Sum_probs=269.3
Q ss_pred hhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHh-cCCCCCCCEEEEEcccHHHHHH
Q 047890 466 LPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQL-HNNPRNGPTVLVLAPTRELATQ 544 (1134)
Q Consensus 466 ~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~-~~~~~~g~kvLVLvPTreLa~Q 544 (1134)
.+.+..++...|.+||+.|.+||+.+.+|+++||+||||||||+++++|++..|... ...+..+..||||+|.++|...
T Consensus 9 ~~~v~~~~~~~~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 9 DPRVREWFKRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 355677777779999999999999999999999999999999999999999988765 3444567899999999999999
Q ss_pred HHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc--CCCCeEEEEEcchhhhhccCchH
Q 047890 545 IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI--DFGQVSLLVLDEADRMLDMGFEP 622 (1134)
Q Consensus 545 ~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l--~l~~l~lVVIDEAHrll~~gf~~ 622 (1134)
+...++.++...++.+.+-+|++...+..+...+.++|+|+||+.|.-++....+ .|.++.+|||||+|.+.+.....
T Consensus 89 i~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~ 168 (814)
T COG1201 89 IRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGV 168 (814)
T ss_pred HHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccch
Confidence 9999999999999999999999988888888888899999999999888865443 47899999999999998776554
Q ss_pred HHHHHHHh---CCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc------hhHHHHHHH
Q 047890 623 QIRKIVNE---MPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP------QMEKERRLQ 693 (1134)
Q Consensus 623 ~i~~IL~~---l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~------~~ek~~~L~ 693 (1134)
.+.-.|+. +....|+|++|||.. +..++++.+........+.... ..+.....+.... .......+.
T Consensus 169 ~Lsl~LeRL~~l~~~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~---~~k~~~i~v~~p~~~~~~~~~~~~~~~~ 244 (814)
T COG1201 169 QLALSLERLRELAGDFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVS---AAKKLEIKVISPVEDLIYDEELWAALYE 244 (814)
T ss_pred hhhhhHHHHHhhCcccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcc---cCCcceEEEEecCCccccccchhHHHHH
Confidence 44433332 233789999999986 5556666555443111111111 1111111111111 122344566
Q ss_pred HHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCC--CcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcce
Q 047890 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGRN--FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771 (1134)
Q Consensus 694 ~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~--~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~ 771 (1134)
.+.+.++..+.+|||+||+..+|.|+..|++. ..+.++||+++.+.|.++.++|++|+.+++|||+.++-|||+.+++
T Consensus 245 ~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vd 324 (814)
T COG1201 245 RIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDID 324 (814)
T ss_pred HHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCce
Confidence 66666677789999999999999999999775 5799999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCChhhHHHhhhccCcC-CCcceeEEEecc
Q 047890 772 VVINYDFPNGVEDYVHRIGRTGRA-GATGVAHTFFSE 807 (1134)
Q Consensus 772 ~VI~~d~P~s~~~yiQRiGRagR~-GqkG~~ii~~~~ 807 (1134)
+||++..|.+...++||+||+|.. +.....+++...
T Consensus 325 lVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 325 LVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999874 454555555544
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-36 Score=378.76 Aligned_cols=333 Identities=18% Similarity=0.275 Sum_probs=245.9
Q ss_pred cccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccH
Q 047890 460 HEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTR 539 (1134)
Q Consensus 460 ~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTr 539 (1134)
.++.+....++.+...+|. |+++|.++++.+++++++|+++|||||||+++.++++..+. .+.++|||+|++
T Consensus 4 ~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~-------~~~k~v~i~P~r 75 (674)
T PRK01172 4 SDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL-------AGLKSIYIVPLR 75 (674)
T ss_pred hhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH-------hCCcEEEEechH
Confidence 3455777888888888887 99999999999999999999999999999999998887765 245899999999
Q ss_pred HHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC
Q 047890 540 ELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG 619 (1134)
Q Consensus 540 eLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g 619 (1134)
+||.|+++++.++. ..++.+...+|+...... +...++|+|+||+++..++......+.++++|||||+|++.+..
T Consensus 76 aLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 76 SLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred HHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCC
Confidence 99999999999864 356777777777654322 23457999999999998887766668899999999999998877
Q ss_pred chHHHHHHHHh---CCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhccccee--eEEEecchhHHHHHHHH
Q 047890 620 FEPQIRKIVNE---MPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAIT--QHVEVVPQMEKERRLQQ 694 (1134)
Q Consensus 620 f~~~i~~IL~~---l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~--~~~~~v~~~ek~~~L~~ 694 (1134)
+...+..++.. +....++|++|||++. ..++..++-...+.... ........+. ..+...........+..
T Consensus 152 rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~---r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 152 RGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNF---RPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred ccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCC---CCCCeEEEEEecCeeeecccccccccHHH
Confidence 77777766543 4567899999999864 45555543222111000 0000000000 00000000001111223
Q ss_pred HHH-HHhcCCEEEEEeCcHHHHHHHHHHhcCC--------------------------CcEEEecCCCChhHHHHHHHHH
Q 047890 695 ILR-AQERGSRVIIFCSTKRLCDQLARSIGRN--------------------------FGAIAIHGDKSQGERDWVLNQF 747 (1134)
Q Consensus 695 llk-~~~~~~kvLVF~nT~~~ae~La~~L~~~--------------------------~~v~~LhG~ms~~eR~~il~~F 747 (1134)
+++ ....++++||||++++.|+.++..|... .++..+|++++.++|..+++.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 333 3456789999999999999998877421 2477899999999999999999
Q ss_pred hcCCCCeeeecccceeccccCcceEEEeecC---------CCChhhHHHhhhccCcCCC--cceeEEEecccc
Q 047890 748 RSGKSPILVATDVAARGLDIKDIRVVINYDF---------PNGVEDYVHRIGRTGRAGA--TGVAHTFFSEQD 809 (1134)
Q Consensus 748 rsGe~~VLVATdvl~~GLDIp~v~~VI~~d~---------P~s~~~yiQRiGRagR~Gq--kG~~ii~~~~~d 809 (1134)
++|.++|||||+++++|||+|+..+|| .+. +.+..+|.||+||+||.|. .|.+++++...+
T Consensus 308 ~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 308 RNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 999999999999999999999865555 332 4577899999999999984 566777765543
No 51
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.4e-36 Score=366.27 Aligned_cols=400 Identities=16% Similarity=0.147 Sum_probs=264.4
Q ss_pred CcccccCCceeeccCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCCCCCccccccccccCCCCCCCC-------CCC
Q 047890 361 NVHCRTGNDYYFNGNKDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLNAVAGHAMHGMYSHAGS-------FPN 433 (1134)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h~~~-------~~~ 433 (1134)
++.++..|.+|+--.. -|.+.+...++|+|+||.|++.-+|+.+.++.--.... . .. .+..+- ..+
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~f~np~~~~~~~~r~~~~~~~i~~~~---~--~~-~~prG~~~~~~~~~~~ 75 (501)
T PHA02558 3 DIKIHFKNESHVRIEC-EPSIFYELRDYFSFEVPGYKFNPKFKYGGWDGKIRLLD---Y--NG-LLPYGLVGQLKKFAKN 75 (501)
T ss_pred ceEEEEeeeeEEEEEe-cchHHHHHHhhcceeCCCceecccccCCCCCceEEEec---c--CC-CcccchHHHHHHHHHh
Confidence 3567789999998777 67799999999999999999988886666653111110 0 00 111110 000
Q ss_pred CCCCCCCCCCCCCC---cCCChhHhhhhccccccchhHHHHHHH--cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchh
Q 047890 434 NAMMRPTFMGSPGV---TDLSPAEVYRQRHEVSATLPRVASMHS--AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT 508 (1134)
Q Consensus 434 ~a~~~P~~~~~p~i---~~~~p~e~~~~~~ev~v~~~~l~~l~~--~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKT 508 (1134)
..+ .+ ++.+ .+ ..++..+.. .-+...... .+...|+++|.+|++.++.++++|++++||+|||
T Consensus 76 ~g~-~~-~~~~-~~~~~~~~~~~~f~---------~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT 143 (501)
T PHA02558 76 RGY-SI-WVDP-RIEENEDISREDFD---------EWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKS 143 (501)
T ss_pred cCC-eE-ecCc-ccccCCCCCHHHHH---------hHhhhcccccCCCcCCCCHHHHHHHHHHHhcCceEEEeCCCCCHH
Confidence 000 01 0100 00 011111100 000000111 1245799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChH
Q 047890 509 LGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPG 588 (1134)
Q Consensus 509 la~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPe 588 (1134)
+++++.+...+.. ...++||||||++|+.||.++|++|+......+..+.+|.... ...+|+|+|++
T Consensus 144 ~i~~~l~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~q 210 (501)
T PHA02558 144 LIQYLLSRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQ 210 (501)
T ss_pred HHHHHHHHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHH
Confidence 9876543333321 2348999999999999999999998755444555666665432 34789999999
Q ss_pred HHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHH-hhccCCeeeeeccc
Q 047890 589 RLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIAS-DLLVNPVQVNIGNV 667 (1134)
Q Consensus 589 rL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~-~~l~~~~~i~i~~~ 667 (1134)
+|.+... ..+.++++|||||||++... .+..++..++...++++||||+......... ..+..++...+..
T Consensus 211 sl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~- 282 (501)
T PHA02558 211 SAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTT- 282 (501)
T ss_pred HHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCCceEEecH-
Confidence 9976542 24678999999999998753 4566777776677899999998643321111 1111112111111
Q ss_pred hhhhccccee-------------------------eEE-EecchhHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHH
Q 047890 668 DELAANKAIT-------------------------QHV-EVVPQMEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLAR 720 (1134)
Q Consensus 668 d~l~~~~~i~-------------------------~~~-~~v~~~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~ 720 (1134)
.++.....+. ..+ .++....+...+..++..+ ..+.++||||+++++++.|++
T Consensus 283 ~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~ 362 (501)
T PHA02558 283 SQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYE 362 (501)
T ss_pred HHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHH
Confidence 1110000000 000 0111111222333333322 456789999999999999999
Q ss_pred HhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeec-ccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCc
Q 047890 721 SIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVAT-DVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGAT 798 (1134)
Q Consensus 721 ~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVAT-dvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~Gqk 798 (1134)
.|.+ +..+..+||+++.++|..+++.|++++..||||| +++++|+|+|++++||+++++.+...|+||+||++|.+..
T Consensus 363 ~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 363 MLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred HHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCC
Confidence 9965 6789999999999999999999999999999998 8999999999999999999999999999999999998765
Q ss_pred ce
Q 047890 799 GV 800 (1134)
Q Consensus 799 G~ 800 (1134)
+.
T Consensus 443 K~ 444 (501)
T PHA02558 443 KS 444 (501)
T ss_pred Cc
Confidence 43
No 52
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=325.68 Aligned_cols=332 Identities=29% Similarity=0.524 Sum_probs=281.8
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
+.++-++.+++.+|-..||.+|..+|.++||...-|.|+|+.|..|.|||.+|++..+..++- ......+||+|.|
T Consensus 44 frdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep----v~g~vsvlvmcht 119 (387)
T KOG0329|consen 44 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP----VDGQVSVLVMCHT 119 (387)
T ss_pred hhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC----CCCeEEEEEEecc
Confidence 344556788899999999999999999999999999999999999999999998876665542 1245689999999
Q ss_pred HHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 539 RELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 539 reLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
||||-||.+++.+|.+.. .+++.+.+||.......+.+.+.++|+|+||++++.+...+.++++++..+|+||||.|+.
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH
Confidence 999999999999988764 4789999999988888888888889999999999999999999999999999999999876
Q ss_pred c-CchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHH
Q 047890 618 M-GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL 696 (1134)
Q Consensus 618 ~-gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ll 696 (1134)
. .....+.+|....+...|++++|||++.+++.+.++++.+|..+.+.+...+.. ..+.+++....+.+|...|.++|
T Consensus 200 ~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtL-HGLqQ~YvkLke~eKNrkl~dLL 278 (387)
T KOG0329|consen 200 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTL-HGLQQYYVKLKENEKNRKLNDLL 278 (387)
T ss_pred HHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhh-hhHHHHHHhhhhhhhhhhhhhhh
Confidence 3 456778888888899999999999999999999999999999888766554443 45667777788888888898888
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEee
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINY 776 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~ 776 (1134)
..++. ..++||+.+...+ + | ..+ ||||+++++|+||..++.||||
T Consensus 279 d~LeF-NQVvIFvKsv~Rl--------------------~----------f---~kr-~vat~lfgrgmdiervNi~~NY 323 (387)
T KOG0329|consen 279 DVLEF-NQVVIFVKSVQRL--------------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNY 323 (387)
T ss_pred hhhhh-cceeEeeehhhhh--------------------h----------h---hhh-hHHhhhhccccCcccceeeecc
Confidence 87765 5889999886651 0 2 223 8999999999999999999999
Q ss_pred cCCCChhhHHHhhhccCcCCCcceeEEEeccc-chHHHHHHHHHHHhhcCCCCHH
Q 047890 777 DFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQ-DSKYAADLVKVLEGANQHVPPE 830 (1134)
Q Consensus 777 d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~-d~~~~~~l~k~L~~~~~~lp~~ 830 (1134)
|+|.+.+.|+||++|+||.|.+|.++.|+..+ +..++..+.+..+....+++++
T Consensus 324 dmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 324 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred CCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999999754 5555556666555555666655
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=7e-36 Score=385.34 Aligned_cols=300 Identities=23% Similarity=0.284 Sum_probs=222.1
Q ss_pred EEccCCCchhHHHHHHHHHHHHHhcC------CCCCCCEEEEEcccHHHHHHHHHHHHHhc------------cCCCCce
Q 047890 499 AIAKTGSGKTLGYLIPAFILLRQLHN------NPRNGPTVLVLAPTRELATQIQDEANKFG------------RSSRLSC 560 (1134)
Q Consensus 499 l~ApTGSGKTla~llpal~~L~~~~~------~~~~g~kvLVLvPTreLa~Q~~~el~kl~------------~~~~i~v 560 (1134)
|+||||||||++|++|++..+..... ....+.++|||+|+++|+.|+++.+++.+ ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999887654321 12346899999999999999999887521 1246788
Q ss_pred EEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc-ccCCCCeEEEEEcchhhhhccCc----hHHHHHHHHhCCCCc
Q 047890 561 TCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK-KIDFGQVSLLVLDEADRMLDMGF----EPQIRKIVNEMPPHR 635 (1134)
Q Consensus 561 ~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~-~l~l~~l~lVVIDEAHrll~~gf----~~~i~~IL~~l~~~~ 635 (1134)
.+.+|+....+..+.+.+.++|||+||++|..++..+ ...+.++++|||||+|.|++..+ ...+.++...+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8899998887776667778999999999999987644 34688999999999999997643 344555555566778
Q ss_pred eEEEEeccCchhHHHHHHhhccC-CeeeeeccchhhhcccceeeEEEecchhH---------------------HHHHHH
Q 047890 636 QTLMYTATWPKDVRKIASDLLVN-PVQVNIGNVDELAANKAITQHVEVVPQME---------------------KERRLQ 693 (1134)
Q Consensus 636 qiLllSATl~~~v~~l~~~~l~~-~~~i~i~~~d~l~~~~~i~~~~~~v~~~e---------------------k~~~L~ 693 (1134)
|+|+||||+.+ .+++++.+..+ ++.+.. ... .....+...+ .+.... ......
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~--~~~-~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN--PPA-MRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC--CCC-CcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 99999999975 55666544322 332211 111 1111111111 111000 011223
Q ss_pred HHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCCC----------------------------------cEEEecCCCChhH
Q 047890 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGRNF----------------------------------GAIAIHGDKSQGE 739 (1134)
Q Consensus 694 ~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~~----------------------------------~v~~LhG~ms~~e 739 (1134)
.++..+....++||||||++.|+.|+..|++.+ .+..+||++++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 455555567899999999999999998885421 2567899999999
Q ss_pred HHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcC-CCcceeEE
Q 047890 740 RDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRA-GATGVAHT 803 (1134)
Q Consensus 740 R~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~-GqkG~~ii 803 (1134)
|..+++.|++|+++|||||++++.||||+++++||+++.|.+..+|+||+||+||. +..+.+++
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli 380 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLF 380 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999996 23334443
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-35 Score=351.00 Aligned_cols=328 Identities=27% Similarity=0.426 Sum_probs=256.3
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHH
Q 047890 469 VASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDE 548 (1134)
Q Consensus 469 l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~e 548 (1134)
|+.+ +||..+++-|.++|..+++++|+|+..|||.||++||.+|++.. .| .+|||+|..+|.....+.
T Consensus 9 L~~~--fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G-~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 9 LKQV--FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EG-LTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHH--hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CC-CEEEECchHHHHHHHHHH
Confidence 4444 57999999999999999999999999999999999999998764 22 799999999999999999
Q ss_pred HHHhccCCCCceEEecCCCCCchhH---HhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC--chH
Q 047890 549 ANKFGRSSRLSCTCLYGGAPKGPQL---RELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG--FEP 622 (1134)
Q Consensus 549 l~kl~~~~~i~v~~l~GG~~~~~~l---~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g--f~~ 622 (1134)
++..+ +.+.++.+..+..+.. ..+.. ..+|++.+||+|..-...+.+..-.+.+||||||||+..|| |.+
T Consensus 77 l~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 77 LEAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 98864 6666666664444332 23333 37999999999876544444445678999999999999997 999
Q ss_pred HHHHHHH---hCCCCceEEEEeccCchhHHHHHHhhcc-CCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHH-
Q 047890 623 QIRKIVN---EMPPHRQTLMYTATWPKDVRKIASDLLV-NPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR- 697 (1134)
Q Consensus 623 ~i~~IL~---~l~~~~qiLllSATl~~~v~~l~~~~l~-~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk- 697 (1134)
.+..+.. .++ +..++.+|||.+..+++-+...|. +...+.+...+. .++...+.... +....+..+.+
T Consensus 153 ~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR----pNi~~~v~~~~--~~~~q~~fi~~~ 225 (590)
T COG0514 153 DYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR----PNLALKVVEKG--EPSDQLAFLATV 225 (590)
T ss_pred hHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC----chhhhhhhhcc--cHHHHHHHHHhh
Confidence 8887644 343 678999999999988866655543 222222222221 11211111111 11222222222
Q ss_pred HHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEee
Q 047890 698 AQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINY 776 (1134)
Q Consensus 698 ~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~ 776 (1134)
........||||.|++.++.+++.|.. ++.+..+|++|+.++|+.+.++|..++++|||||.++++|||.|||.+||||
T Consensus 226 ~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 226 LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEe
Confidence 123456689999999999999999965 5899999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHH
Q 047890 777 DFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKV 819 (1134)
Q Consensus 777 d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~ 819 (1134)
|+|.+++.|+|.+||+||+|....|++|+...|......+++.
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 9999999999999999999999999999999998776666554
No 55
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.3e-34 Score=323.58 Aligned_cols=323 Identities=27% Similarity=0.313 Sum_probs=237.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
.++|.+|......++.. ++||+.|||.|||+++++.+...|++. .+ ++|+|+||+-|+.|.++.|.++.....
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-----~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-----GG-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-----CC-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 46899999998888876 899999999999999999888888753 33 899999999999999999999876655
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceE
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQT 637 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qi 637 (1134)
..++.++|.....+ ...++....|+|+||+.+.+.+..+.+++.++.+||||||||.....-...+.+..-...++..+
T Consensus 87 ~~i~~ltGev~p~~-R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~i 165 (542)
T COG1111 87 DEIAALTGEVRPEE-REELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLI 165 (542)
T ss_pred hheeeecCCCChHH-HHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceE
Confidence 66777777665543 44455668999999999999999999999999999999999987665555555544455677779
Q ss_pred EEEeccCchhHH---HHHHhhccCCeeeeec-------------------------------------------------
Q 047890 638 LMYTATWPKDVR---KIASDLLVNPVQVNIG------------------------------------------------- 665 (1134)
Q Consensus 638 LllSATl~~~v~---~l~~~~l~~~~~i~i~------------------------------------------------- 665 (1134)
|+||||.-.+.+ ++...+..+.+.+..+
T Consensus 166 lgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~ 245 (542)
T COG1111 166 LGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVI 245 (542)
T ss_pred EEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCce
Confidence 999999543322 2222221111110000
Q ss_pred ---c----chhhhcc-cce--eeEEE-------------------------------------------e---------c
Q 047890 666 ---N----VDELAAN-KAI--TQHVE-------------------------------------------V---------V 683 (1134)
Q Consensus 666 ---~----~d~l~~~-~~i--~~~~~-------------------------------------------~---------v 683 (1134)
. .+.+... ..+ ..... . .
T Consensus 246 ~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~ 325 (542)
T COG1111 246 ESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLL 325 (542)
T ss_pred eccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHh
Confidence 0 0000000 000 00000 0 0
Q ss_pred -------------------chhHHHHHHHHHHHHH---hcCCEEEEEeCcHHHHHHHHHHhcCCCcEE--Ee--------
Q 047890 684 -------------------PQMEKERRLQQILRAQ---ERGSRVIIFCSTKRLCDQLARSIGRNFGAI--AI-------- 731 (1134)
Q Consensus 684 -------------------~~~ek~~~L~~llk~~---~~~~kvLVF~nT~~~ae~La~~L~~~~~v~--~L-------- 731 (1134)
....|...+.++++.. ..+.++|||++.++.++.|...|.+....+ .+
T Consensus 326 ~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~ 405 (542)
T COG1111 326 ADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREG 405 (542)
T ss_pred cChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccc
Confidence 0000122233333332 234689999999999999999997643221 22
Q ss_pred cCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccc
Q 047890 732 HGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQD 809 (1134)
Q Consensus 732 hG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d 809 (1134)
..+|++++..++++.|++|+++|||||+++++|||||++++||+|++..|...++||+||+||. ++|.+++++.+..
T Consensus 406 ~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 406 DKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred ccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 3579999999999999999999999999999999999999999999999999999999999998 8999999999873
No 56
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.8e-33 Score=332.93 Aligned_cols=355 Identities=24% Similarity=0.372 Sum_probs=288.0
Q ss_pred HHcCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHH
Q 047890 473 HSAGFSSPTPIQAQTWPIALQG------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQ 546 (1134)
Q Consensus 473 ~~~Gf~~prpiQ~eaI~~il~g------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~ 546 (1134)
....| +||..|+++|..|+.. .+-||+++.|||||+++++.++..+. .+..+.+++||.-||+|.+
T Consensus 257 ~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-------~G~Q~ALMAPTEILA~QH~ 328 (677)
T COG1200 257 AALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-------AGYQAALMAPTEILAEQHY 328 (677)
T ss_pred HhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-------cCCeeEEeccHHHHHHHHH
Confidence 33455 4999999999999975 45799999999999999999998876 6889999999999999999
Q ss_pred HHHHHhccCCCCceEEecCCCC---CchhHHhhcCC-CcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchH
Q 047890 547 DEANKFGRSSRLSCTCLYGGAP---KGPQLRELDQG-ADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEP 622 (1134)
Q Consensus 547 ~el~kl~~~~~i~v~~l~GG~~---~~~~l~~l~~~-~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~ 622 (1134)
+.+.+|+...++.+..++|... +.+.+..+..+ .+|||+|. .|....+.+.++.+||+||-|| |..
T Consensus 329 ~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQHR-----FGV 398 (677)
T COG1200 329 ESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQHR-----FGV 398 (677)
T ss_pred HHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEecccc-----ccH
Confidence 9999999999999999998654 33444555555 89999995 4445577889999999999999 777
Q ss_pred HHHHHHHhCCC-CceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhc
Q 047890 623 QIRKIVNEMPP-HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQER 701 (1134)
Q Consensus 623 ~i~~IL~~l~~-~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~ 701 (1134)
.-+..|..... ...+|+||||. ..+.++-..+.+ +.++.++++.....-... .++........+..+.+++..
T Consensus 399 ~QR~~L~~KG~~~Ph~LvMTATP--IPRTLAlt~fgD---ldvS~IdElP~GRkpI~T-~~i~~~~~~~v~e~i~~ei~~ 472 (677)
T COG1200 399 HQRLALREKGEQNPHVLVMTATP--IPRTLALTAFGD---LDVSIIDELPPGRKPITT-VVIPHERRPEVYERIREEIAK 472 (677)
T ss_pred HHHHHHHHhCCCCCcEEEEeCCC--chHHHHHHHhcc---ccchhhccCCCCCCceEE-EEeccccHHHHHHHHHHHHHc
Confidence 77777776666 67899999994 344555555444 344455666554322222 234445667778888888899
Q ss_pred CCEEEEEeCcHH--------HHHHHHHHhcC---CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcc
Q 047890 702 GSRVIIFCSTKR--------LCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770 (1134)
Q Consensus 702 ~~kvLVF~nT~~--------~ae~La~~L~~---~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v 770 (1134)
+.++.|+|+-++ .++.+++.|.. ++.+..+||.|+.+++++++++|++|+++|||||.|++.|||+|++
T Consensus 473 GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnA 552 (677)
T COG1200 473 GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNA 552 (677)
T ss_pred CCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCC
Confidence 999999998654 44555666653 4568999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCC-ChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhhcCCC--CcccCC
Q 047890 771 RVVINYDFPN-GVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCGPG--FGKDRG 847 (1134)
Q Consensus 771 ~~VI~~d~P~-s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r~g~g--~Gk~~g 847 (1134)
+++|..+.-. ..+.+.|..||+||.+.+..|++++.....+.....++++.+..+.|..+.+|+..| |+| +|.++.
T Consensus 553 TvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLklR-GpGe~lG~rQS 631 (677)
T COG1200 553 TVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKLR-GPGELLGTRQS 631 (677)
T ss_pred eEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhcc-CCccccCCccc
Confidence 9998888654 789999999999999999999999999888888999999999999999999999999 665 666665
Q ss_pred CCccc
Q 047890 848 GVSRF 852 (1134)
Q Consensus 848 G~~R~ 852 (1134)
|...|
T Consensus 632 G~~~f 636 (677)
T COG1200 632 GLPEF 636 (677)
T ss_pred CCcce
Confidence 54443
No 57
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-33 Score=346.62 Aligned_cols=311 Identities=19% Similarity=0.241 Sum_probs=227.2
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHH---------HHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 481 TPIQAQTWPIALQGRDIVAIAKTGSGKTLG---------YLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 481 rpiQ~eaI~~il~grdvLl~ApTGSGKTla---------~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
-.+|+++++.+++++++|++|+||||||.+ |+++.+..+.... .......+||++||++||.|+.+++.+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 357999999999999999999999999987 3344444443221 112356899999999999999999987
Q ss_pred hccC---CCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHH
Q 047890 552 FGRS---SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIV 628 (1134)
Q Consensus 552 l~~~---~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL 628 (1134)
.... .++.+.+.+|+... .......+..+|||+|+... ...+.++++|||||||++...+ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 5543 34566778888762 22222233678999996521 1246789999999999987654 4455555
Q ss_pred HhCC-CCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc----------hhHHHHHHHHHHH
Q 047890 629 NEMP-PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP----------QMEKERRLQQILR 697 (1134)
Q Consensus 629 ~~l~-~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~----------~~ek~~~L~~llk 697 (1134)
..+. ..+|+|+||||++.++..+ ..++.++..+.+... ....+.+++.... ..++...+..+.+
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~ 389 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKK 389 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHH
Confidence 4443 3358999999999888776 567777776665421 1122333322111 1122223333332
Q ss_pred HH-hcCCEEEEEeCcHHHHHHHHHHhcC---CCcEEEecCCCChhHHHHHHHHH-hcCCCCeeeecccceeccccCcceE
Q 047890 698 AQ-ERGSRVIIFCSTKRLCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQF-RSGKSPILVATDVAARGLDIKDIRV 772 (1134)
Q Consensus 698 ~~-~~~~kvLVF~nT~~~ae~La~~L~~---~~~v~~LhG~ms~~eR~~il~~F-rsGe~~VLVATdvl~~GLDIp~v~~ 772 (1134)
.. ..++.+||||+++++++.+++.|.+ ++.+..|||++++. ++++++| ++|+.+|||||+++++||||++|++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 22 2356899999999999999999975 47899999999974 5677787 6899999999999999999999999
Q ss_pred EEeec---CCC---------ChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 773 VINYD---FPN---------GVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 773 VI~~d---~P~---------s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
||+++ .|. +.+.|+||+||+||. ++|.|+.|+++.+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 554 778999999999999 89999999988764
No 58
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.8e-33 Score=362.36 Aligned_cols=297 Identities=22% Similarity=0.301 Sum_probs=229.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.|+ +|+++|+++++.++.+++++++||||+|||+ |+++++..+.. .+.++|||+||++|+.|+++.+++++.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~------~g~~alIL~PTreLa~Qi~~~l~~l~~ 148 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK------KGKKSYIIFPTRLLVEQVVEKLEKFGE 148 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh------cCCeEEEEeccHHHHHHHHHHHHHHhh
Confidence 366 7999999999999999999999999999996 44444444331 467999999999999999999999998
Q ss_pred CCCCceEEecCCCCC-----chhHHhhc-CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc-----------
Q 047890 555 SSRLSCTCLYGGAPK-----GPQLRELD-QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD----------- 617 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~-----~~~l~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~----------- 617 (1134)
..++.+.+++++... ......+. ..++|+|+||++|.+++. .+....+++|||||||+|++
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~ 226 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYL 226 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHh
Confidence 888887777766532 22333444 358999999999998876 45566799999999999986
Q ss_pred cCch-HHHHHHHHhCCC------------------------CceEEEEeccCchh-HHHHHHhhccCCeeeeeccchhhh
Q 047890 618 MGFE-PQIRKIVNEMPP------------------------HRQTLMYTATWPKD-VRKIASDLLVNPVQVNIGNVDELA 671 (1134)
Q Consensus 618 ~gf~-~~i~~IL~~l~~------------------------~~qiLllSATl~~~-v~~l~~~~l~~~~~i~i~~~d~l~ 671 (1134)
.+|. ..+..++..++. ..|++++|||+++. ++.. ++.+...+.+.... .
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~---l~~~ll~~~v~~~~--~ 301 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK---LFRELLGFEVGSPV--F 301 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH---HhhccceEEecCcc--c
Confidence 6775 567777766654 67899999999764 4321 22233334443322 1
Q ss_pred cccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHH---HHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHH
Q 047890 672 ANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRL---CDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQF 747 (1134)
Q Consensus 672 ~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~---ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~F 747 (1134)
...++.+.+..+. ++...|..+++.. +..+||||++++. ++.|++.|.. ++.+..+||+| .+.+++|
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 2334555554443 5566677777654 3589999999766 9999999965 79999999999 2346999
Q ss_pred hcCCCCeeee----cccceeccccCc-ceEEEeecCCC------ChhhHHHhhhccCcC
Q 047890 748 RSGKSPILVA----TDVAARGLDIKD-IRVVINYDFPN------GVEDYVHRIGRTGRA 795 (1134)
Q Consensus 748 rsGe~~VLVA----Tdvl~~GLDIp~-v~~VI~~d~P~------s~~~yiQRiGRagR~ 795 (1134)
++|+++|||| |++++||||||+ |++||||++|. ..+.|.|++||+...
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 9999999999 699999999999 89999999998 678899999999743
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.6e-33 Score=325.97 Aligned_cols=299 Identities=19% Similarity=0.210 Sum_probs=208.8
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCC------
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPK------ 569 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~------ 569 (1134)
++|+.+|||||||++|+++++..+.. ....++||++|+++|+.|+++.+++++.. .+..+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-----~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-----QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-----CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhcc
Confidence 58999999999999999999877642 23568999999999999999999997432 22222222110
Q ss_pred -----chh-HHhh------cCCCcEEEeChHHHHHHHHhcc----cCC--CCeEEEEEcchhhhhccCchHHHHHHHHhC
Q 047890 570 -----GPQ-LREL------DQGADIVVATPGRLNDILEMKK----IDF--GQVSLLVLDEADRMLDMGFEPQIRKIVNEM 631 (1134)
Q Consensus 570 -----~~~-l~~l------~~~~dIIVaTPerL~~lL~~~~----l~l--~~l~lVVIDEAHrll~~gf~~~i~~IL~~l 631 (1134)
... ...+ .-..+|+|+||+.|+..+.... +.+ -..++|||||+|.+.+..+.. +..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 000 0001 1136799999999988765411 111 123789999999998765443 55555544
Q ss_pred C-CCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEE--ecchhHHHHHHHHHHHHHhcCCEEEEE
Q 047890 632 P-PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVE--VVPQMEKERRLQQILRAQERGSRVIIF 708 (1134)
Q Consensus 632 ~-~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~--~v~~~ek~~~L~~llk~~~~~~kvLVF 708 (1134)
. .+.++|+||||++..+.+++..+........+.. .... ....+.+. ......+...+..+++....+.++|||
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDL-KEER--RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCC-cccc--ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 3 4678999999999777777665543321111110 0000 00011111 111223455666677766778899999
Q ss_pred eCcHHHHHHHHHHhcCCC---cEEEecCCCChhHHHH----HHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCC
Q 047890 709 CSTKRLCDQLARSIGRNF---GAIAIHGDKSQGERDW----VLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNG 781 (1134)
Q Consensus 709 ~nT~~~ae~La~~L~~~~---~v~~LhG~ms~~eR~~----il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s 781 (1134)
|+|++.|+.+++.|.+.. .+..+||+++..+|.+ +++.|++++.+|||||+++++||||+ +++||++..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~-- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP-- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--
Confidence 999999999999996532 4899999999999976 48999999999999999999999995 8888888775
Q ss_pred hhhHHHhhhccCcCCCcc----eeEEEecccc
Q 047890 782 VEDYVHRIGRTGRAGATG----VAHTFFSEQD 809 (1134)
Q Consensus 782 ~~~yiQRiGRagR~GqkG----~~ii~~~~~d 809 (1134)
.++|+||+||+||.|++. .+++|....+
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 789999999999988643 5666665543
No 60
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.9e-33 Score=347.13 Aligned_cols=302 Identities=19% Similarity=0.268 Sum_probs=227.5
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH-HhccCCCCceEEe
Q 047890 485 AQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN-KFGRSSRLSCTCL 563 (1134)
Q Consensus 485 ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~-kl~~~~~i~v~~l 563 (1134)
.+.+..+..+.++|++|+||||||++|.++++.... ...++||+.|++++|.|+++.+. .+....+..+...
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 455666777899999999999999999988876542 34589999999999999999985 4444445555544
Q ss_pred cCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchh-hhhccCchHH-HHHHHHhCCCCceEEEEe
Q 047890 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEAD-RMLDMGFEPQ-IRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 564 ~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAH-rll~~gf~~~-i~~IL~~l~~~~qiLllS 641 (1134)
+.... .+.....|+|+|++.|++++.. ...+.++++|||||+| ++++.++.-. +..+...++.+.++|+||
T Consensus 81 vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 81 VRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMS 153 (819)
T ss_pred Ecccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEe
Confidence 44322 2234578999999999998865 4578999999999999 5777665433 345666677889999999
Q ss_pred ccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHH-----HHHHHHHHHHhcCCEEEEEeCcHHHHH
Q 047890 642 ATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE-----RRLQQILRAQERGSRVIIFCSTKRLCD 716 (1134)
Q Consensus 642 ATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~-----~~L~~llk~~~~~~kvLVF~nT~~~ae 716 (1134)
||++.+. +..++.+...+.+... ...+..++......++. ..+..+++. ..+.+||||+++.+++
T Consensus 154 ATl~~~~---l~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 154 ATLDGER---LSSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQAEIR 223 (819)
T ss_pred CCCCHHH---HHHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHH
Confidence 9998653 3455554444433221 11233333333222221 122233322 3578999999999999
Q ss_pred HHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCC-----------
Q 047890 717 QLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNG----------- 781 (1134)
Q Consensus 717 ~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s----------- 781 (1134)
.+++.|.+ ++.+..+||+|+.++|.++++.|++|+.+|||||+++++||||++|++||+++++..
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~ 303 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITR 303 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCce
Confidence 99999865 577899999999999999999999999999999999999999999999999998742
Q ss_pred -------hhhHHHhhhccCcCCCcceeEEEecccchH
Q 047890 782 -------VEDYVHRIGRTGRAGATGVAHTFFSEQDSK 811 (1134)
Q Consensus 782 -------~~~yiQRiGRagR~GqkG~~ii~~~~~d~~ 811 (1134)
.++|+||+||+||. .+|.||.++++.+..
T Consensus 304 L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 304 LETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 34689999999999 899999999876543
No 61
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.8e-31 Score=338.38 Aligned_cols=323 Identities=28% Similarity=0.342 Sum_probs=235.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
.+++++|.+++..++.+ ++||+++||+|||++++++++..+.. .+.++||||||++|+.||.+.+++++....
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK------KGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh------CCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 46899999999998887 89999999999999999888877641 456999999999999999999999865444
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceE
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQT 637 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qi 637 (1134)
..+..++|+.... ....+...++|+|+||+.|...+....+.+.++++|||||||++........+...+........+
T Consensus 87 ~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 87 EKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLV 165 (773)
T ss_pred ceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEE
Confidence 5666777766544 334555668999999999988887778888899999999999987654444444444444456679
Q ss_pred EEEeccCchhH---HHHHHhhccCCeee--------------------eeccch--------------------------
Q 047890 638 LMYTATWPKDV---RKIASDLLVNPVQV--------------------NIGNVD-------------------------- 668 (1134)
Q Consensus 638 LllSATl~~~v---~~l~~~~l~~~~~i--------------------~i~~~d-------------------------- 668 (1134)
++||||..... ..+...+....+.+ .+...+
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~ 245 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVI 245 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 99999963222 22222211110000 000000
Q ss_pred ----------hhh-cccceeeE----------------------------------------------------------
Q 047890 669 ----------ELA-ANKAITQH---------------------------------------------------------- 679 (1134)
Q Consensus 669 ----------~l~-~~~~i~~~---------------------------------------------------------- 679 (1134)
++. ....+...
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 246 VSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHH
Confidence 000 00000000
Q ss_pred --------------EEecchhHHHHHHHHHHHHH---hcCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCC-------
Q 047890 680 --------------VEVVPQMEKERRLQQILRAQ---ERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGD------- 734 (1134)
Q Consensus 680 --------------~~~v~~~ek~~~L~~llk~~---~~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~------- 734 (1134)
..+.....|...|.++++.. ..+.++||||++++.|+.|++.|. .++.+..+||.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDK 405 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccC
Confidence 00001112344455555543 356899999999999999999994 46778888876
Q ss_pred -CChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccc
Q 047890 735 -KSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQD 809 (1134)
Q Consensus 735 -ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d 809 (1134)
+++.+|.+++++|++|+++|||||+++++|+|++++++||+||++++...|+||+||++|.+. +.+++++....
T Consensus 406 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999865 77777776543
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2e-32 Score=343.00 Aligned_cols=301 Identities=17% Similarity=0.273 Sum_probs=225.5
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH-hccCCCCceEEe
Q 047890 485 AQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK-FGRSSRLSCTCL 563 (1134)
Q Consensus 485 ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k-l~~~~~i~v~~l 563 (1134)
.+.+..+.+++++|+.|+||||||++|.++++.... ...++||++|||++|.|+++.+.+ +....+..+...
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 345666778899999999999999999887775321 234899999999999999999854 455556666666
Q ss_pred cCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh-hhccCc-hHHHHHHHHhCCCCceEEEEe
Q 047890 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR-MLDMGF-EPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 564 ~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr-ll~~gf-~~~i~~IL~~l~~~~qiLllS 641 (1134)
+++... ......|+|+|+++|++++.. ...+.++++|||||+|. .++.++ ...+.+++..++.+.++|+||
T Consensus 84 vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 84 MRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred ecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 655432 123467999999999998865 45789999999999996 454443 233455667778889999999
Q ss_pred ccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHH-----HHHHHHHHHhcCCEEEEEeCcHHHHH
Q 047890 642 ATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKER-----RLQQILRAQERGSRVIIFCSTKRLCD 716 (1134)
Q Consensus 642 ATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~-----~L~~llk~~~~~~kvLVF~nT~~~ae 716 (1134)
||++.+. +..++.+...+.+... ...+..++......++.. .+..+++ ...+.+||||+++.+++
T Consensus 157 ATl~~~~---l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~--~~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 157 ATLDNDR---LQQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLR--QESGSLLLFLPGVGEIQ 226 (812)
T ss_pred cCCCHHH---HHHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHH--hCCCCEEEEcCCHHHHH
Confidence 9997642 3455554444433221 112333333333332221 2222222 23578999999999999
Q ss_pred HHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCC-----------
Q 047890 717 QLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNG----------- 781 (1134)
Q Consensus 717 ~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s----------- 781 (1134)
.+++.|.+ ++.+..+||+++.++|.++++.|++|+.+|||||+++++||||++|++||+++++..
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~ 306 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTR 306 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcce
Confidence 99999964 577889999999999999999999999999999999999999999999999876642
Q ss_pred -------hhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 782 -------VEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 782 -------~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
.++|+||+||+||. ..|.||.++++.+.
T Consensus 307 L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 307 LVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred eEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 35799999999999 79999999987643
No 63
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.4e-32 Score=358.46 Aligned_cols=317 Identities=19% Similarity=0.251 Sum_probs=236.5
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.|| +|+++|+++++.++.+++++++||||+|||++++++++.... .+.++|||+||++|+.|+++.++.++.
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-------~g~~aLVl~PTreLa~Qi~~~l~~l~~ 147 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-------KGKKCYIILPTTLLVKQTVEKIESFCE 147 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-------cCCeEEEEECHHHHHHHHHHHHHHHHh
Confidence 699 699999999999999999999999999999966655544322 456899999999999999999999876
Q ss_pred CC--CCceEEecCCCCCchhH---HhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc-----------
Q 047890 555 SS--RLSCTCLYGGAPKGPQL---RELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD----------- 617 (1134)
Q Consensus 555 ~~--~i~v~~l~GG~~~~~~l---~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~----------- 617 (1134)
.. ++.+..++|+....+.. ..+.. .++|||+||++|.+.+... ...++++|||||||+|+.
T Consensus 148 ~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid~~L~l 225 (1638)
T PRK14701 148 KANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNIDRSLQL 225 (1638)
T ss_pred hcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccchhhhc
Confidence 54 45667778887665442 33444 4899999999998876532 226799999999999986
Q ss_pred cCchHHHHH----HHH----------------------hCCCCce-EEEEeccCchh--HHHHHHhhccCCeeeeeccch
Q 047890 618 MGFEPQIRK----IVN----------------------EMPPHRQ-TLMYTATWPKD--VRKIASDLLVNPVQVNIGNVD 668 (1134)
Q Consensus 618 ~gf~~~i~~----IL~----------------------~l~~~~q-iLllSATl~~~--v~~l~~~~l~~~~~i~i~~~d 668 (1134)
.+|.+.+.. ++. .++...+ ++++|||++.. ...+ +.++..+.+....
T Consensus 226 lGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l----~~~~l~f~v~~~~ 301 (1638)
T PRK14701 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKL----YRELLGFEVGSGR 301 (1638)
T ss_pred CCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHH----hhcCeEEEecCCC
Confidence 478777654 322 2234445 57799998753 3333 3444445543322
Q ss_pred hhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHH---HHHHHHHhcC-CCcEEEecCCCChhHHHHHH
Q 047890 669 ELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRL---CDQLARSIGR-NFGAIAIHGDKSQGERDWVL 744 (1134)
Q Consensus 669 ~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~---ae~La~~L~~-~~~v~~LhG~ms~~eR~~il 744 (1134)
.....+.+.+..+....+ ..|..+++.. +..+||||++++. |+.|++.|.. ++.+..+|++ |..++
T Consensus 302 --~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l 371 (1638)
T PRK14701 302 --SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGF 371 (1638)
T ss_pred --CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHH
Confidence 233345555544444434 4566777654 4689999999764 5899999854 7899999984 88999
Q ss_pred HHHhcCCCCeeeec----ccceeccccCc-ceEEEeecCCC---ChhhHHHhh-------------hccCcCCCcceeEE
Q 047890 745 NQFRSGKSPILVAT----DVAARGLDIKD-IRVVINYDFPN---GVEDYVHRI-------------GRTGRAGATGVAHT 803 (1134)
Q Consensus 745 ~~FrsGe~~VLVAT----dvl~~GLDIp~-v~~VI~~d~P~---s~~~yiQRi-------------GRagR~GqkG~~ii 803 (1134)
++|++|+++||||| ++++||||+|+ |++|||||+|. +.+.|.|.. ||++|.|....+++
T Consensus 372 ~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 451 (1638)
T PRK14701 372 DLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVL 451 (1638)
T ss_pred HHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHH
Confidence 99999999999999 58999999999 99999999999 888777765 99999998877765
Q ss_pred EecccchHHHHH
Q 047890 804 FFSEQDSKYAAD 815 (1134)
Q Consensus 804 ~~~~~d~~~~~~ 815 (1134)
.+...+...+..
T Consensus 452 ~~~~~~~~~~~~ 463 (1638)
T PRK14701 452 DVFPEDVEFLRS 463 (1638)
T ss_pred HhHHHHHHHHHH
Confidence 444444443333
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.6e-32 Score=325.88 Aligned_cols=315 Identities=20% Similarity=0.215 Sum_probs=240.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|+++|..+++.++.|+ |+.+.||+|||++|++|++..+. .++.|+||+||++||.|.++++.+++...++
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-------~G~~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-------AGLPVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-------cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 59999999999999999 99999999999999999987654 4679999999999999999999999999999
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhcc-------------------------cCCCCeEEEEEcch
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMKK-------------------------IDFGQVSLLVLDEA 612 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~~-------------------------l~l~~l~lVVIDEA 612 (1134)
.+.+++++... ..+.....++|+|+|...| +|+|..+. .....+.++||||+
T Consensus 174 sv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 99999998753 3445566799999999887 66664331 11355789999999
Q ss_pred hhhhc---------------c--------------------Cch---------------HHHHHHH--------------
Q 047890 613 DRMLD---------------M--------------------GFE---------------PQIRKIV-------------- 628 (1134)
Q Consensus 613 Hrll~---------------~--------------------gf~---------------~~i~~IL-------------- 628 (1134)
|.++= . .|. ..+.+++
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 96430 0 000 0000000
Q ss_pred ----HhC------CC-------------------------------------------------------------CceE
Q 047890 629 ----NEM------PP-------------------------------------------------------------HRQT 637 (1134)
Q Consensus 629 ----~~l------~~-------------------------------------------------------------~~qi 637 (1134)
..+ .. -..+
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 000 00 0136
Q ss_pred EEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHh-cCCEEEEEeCcHHHHH
Q 047890 638 LMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQE-RGSRVIIFCSTKRLCD 716 (1134)
Q Consensus 638 LllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~-~~~kvLVF~nT~~~ae 716 (1134)
.+||||+..+..++...+..+++.|...... .......+..+...+|...|..+++... .+.++||||+|++.++
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~----~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPS----QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCc----cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 7889998877777877777776555443221 1112233344566677777777776643 4578999999999999
Q ss_pred HHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccC---cce-----EEEeecCCCChhhHHH
Q 047890 717 QLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK---DIR-----VVINYDFPNGVEDYVH 787 (1134)
Q Consensus 717 ~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp---~v~-----~VI~~d~P~s~~~yiQ 787 (1134)
.|++.|.+ ++.+.+||+++. +|+..+..|+.+...|+|||++++||+||+ +|. +||++++|.+.+.|+|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 99999954 789999999865 555556667766778999999999999998 666 9999999999999999
Q ss_pred hhhccCcCCCcceeEEEecccch
Q 047890 788 RIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 788 RiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
|+||+||.|.+|.+++|++.+|.
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred hcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999997664
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.6e-32 Score=335.44 Aligned_cols=333 Identities=23% Similarity=0.282 Sum_probs=253.4
Q ss_pred cchhHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHH
Q 047890 464 ATLPRVASMHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELA 542 (1134)
Q Consensus 464 v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa 542 (1134)
+.+.++.-++..++.++.+.|+.++...+.+ +|+||++|||+|||+++++.++..+.+ .+.++|||||+++||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~------~~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE------GGGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh------cCCcEEEEeChHHHH
Confidence 4555566666778878889898888776655 999999999999999999999887764 256999999999999
Q ss_pred HHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchH
Q 047890 543 TQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEP 622 (1134)
Q Consensus 543 ~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~ 622 (1134)
.+.+++|.+| ...++++...+|+..... +....++|||+||++|..++.+....+.++++|||||+|.+.+....+
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~ 165 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGP 165 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCc
Confidence 9999999944 456899999999876543 223458999999999999998777788899999999999988876666
Q ss_pred HHHHHHHhCC---CCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc-------hhHHHHHH
Q 047890 623 QIRKIVNEMP---PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP-------QMEKERRL 692 (1134)
Q Consensus 623 ~i~~IL~~l~---~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~-------~~ek~~~L 692 (1134)
.+..|+.... ...+++++|||++ ...+++..+-.+.. ........+.........+.... ......++
T Consensus 166 ~lE~iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 166 VLESIVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred eehhHHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 6666655443 3378999999996 56666666544433 11112222222222222222222 22346677
Q ss_pred HHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC--------------------------------------CCcEEEecCC
Q 047890 693 QQILRAQERGSRVIIFCSTKRLCDQLARSIGR--------------------------------------NFGAIAIHGD 734 (1134)
Q Consensus 693 ~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~--------------------------------------~~~v~~LhG~ 734 (1134)
+.++..+..++.+||||++++.+...++.|.. ..++..+|++
T Consensus 244 ~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 244 ELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 88888888999999999999888877776641 0135678999
Q ss_pred CChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEE----eec-----CCCChhhHHHhhhccCcCC--CcceeEE
Q 047890 735 KSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI----NYD-----FPNGVEDYVHRIGRTGRAG--ATGVAHT 803 (1134)
Q Consensus 735 ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI----~~d-----~P~s~~~yiQRiGRagR~G--qkG~~ii 803 (1134)
++.++|..+.+.|+.|.++|||||..++.|+|+|.-.+|| .|+ .+-+.-+++|++||+||-| ..|.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999877776 355 3446789999999999977 4566666
Q ss_pred Eeccc
Q 047890 804 FFSEQ 808 (1134)
Q Consensus 804 ~~~~~ 808 (1134)
+....
T Consensus 404 ~~~~~ 408 (766)
T COG1204 404 LATSH 408 (766)
T ss_pred EecCc
Confidence 66333
No 66
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-31 Score=324.64 Aligned_cols=322 Identities=21% Similarity=0.257 Sum_probs=222.8
Q ss_pred CCCCHHHHHHHHHHHcC---CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 478 SSPTPIQAQTWPIALQG---RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~g---rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
..|++||++||..++.. +..||++|||+|||++.+..+... ..++|||||+.+|+.||.++|++|..
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 46999999999998853 468999999999999987654332 23699999999999999999999975
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh--------cccCCCCeEEEEEcchhhhhccCchHHHHH
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM--------KKIDFGQVSLLVLDEADRMLDMGFEPQIRK 626 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~--------~~l~l~~l~lVVIDEAHrll~~gf~~~i~~ 626 (1134)
.....+..++++... .+.....|+|+|+..+...... ..+....+++||+||||++.. ..+.+
T Consensus 324 l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~ 394 (732)
T TIGR00603 324 IDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRR 394 (732)
T ss_pred CCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHH
Confidence 444555555554321 1123478999999887543211 123345789999999999854 45566
Q ss_pred HHHhCCCCceEEEEeccCchhHHHHH-HhhccCCeeeeeccchhhhcccceeeEE---E---------------------
Q 047890 627 IVNEMPPHRQTLMYTATWPKDVRKIA-SDLLVNPVQVNIGNVDELAANKAITQHV---E--------------------- 681 (1134)
Q Consensus 627 IL~~l~~~~qiLllSATl~~~v~~l~-~~~l~~~~~i~i~~~d~l~~~~~i~~~~---~--------------------- 681 (1134)
++..+... .+|+||||+..+...+. -.++..+..+..... ++.....+.... .
T Consensus 395 il~~l~a~-~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~-eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 395 VLTIVQAH-CKLGLTATLVREDDKITDLNFLIGPKLYEANWM-ELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HHHhcCcC-cEEEEeecCcccCCchhhhhhhcCCeeeecCHH-HHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 66666443 48999999753322111 112223333332221 111111111110 0
Q ss_pred --ecchhHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHhcC-CCCeeee
Q 047890 682 --VVPQMEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSG-KSPILVA 757 (1134)
Q Consensus 682 --~v~~~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~FrsG-e~~VLVA 757 (1134)
......|...+..+++.. ..+.++||||.+.+.++.+++.|. +..|||+++..+|.++++.|+++ ++++||+
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----CceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 011122344445555543 267899999999999999999884 45699999999999999999875 8899999
Q ss_pred cccceeccccCcceEEEeecCCC-ChhhHHHhhhccCcCCCccee-------EEEeccc--chHHHHHHHHHHHhhc
Q 047890 758 TDVAARGLDIKDIRVVINYDFPN-GVEDYVHRIGRTGRAGATGVA-------HTFFSEQ--DSKYAADLVKVLEGAN 824 (1134)
Q Consensus 758 Tdvl~~GLDIp~v~~VI~~d~P~-s~~~yiQRiGRagR~GqkG~~-------ii~~~~~--d~~~~~~l~k~L~~~~ 824 (1134)
|+++.+|||+|++++||+++.|. +...|+||+||++|.+..+.+ |.|++.. +..+..+...+|-+.+
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 99999999999999999999985 999999999999999876654 6666654 3444455555555443
No 67
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=9.8e-33 Score=305.41 Aligned_cols=281 Identities=32% Similarity=0.564 Sum_probs=223.2
Q ss_pred CEEEEEcccHHHHHHHHHHHHHh---ccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEE
Q 047890 530 PTVLVLAPTRELATQIQDEANKF---GRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSL 606 (1134)
Q Consensus 530 ~kvLVLvPTreLa~Q~~~el~kl---~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~l 606 (1134)
+.+||+-|++||++|.++.+++| ..+..++..+++||.....+...+..+.+|||+||++|.+.+....+.+..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 56899999999999999966655 444456777889999999999999999999999999999999999999999999
Q ss_pred EEEcchhhhhccCchHHHHHHHHhCCC------CceEEEEeccCc-hhHHHHHHhhccCCeeeeeccchhhhcccceeeE
Q 047890 607 LVLDEADRMLDMGFEPQIRKIVNEMPP------HRQTLMYTATWP-KDVRKIASDLLVNPVQVNIGNVDELAANKAITQH 679 (1134)
Q Consensus 607 VVIDEAHrll~~gf~~~i~~IL~~l~~------~~qiLllSATl~-~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~ 679 (1134)
+|+||++.++..++.+.|.++...++. ..|.+++|||+. -++.++.++++.-+..+.+...|.+.. .+...
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe--tvHhv 444 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE--TVHHV 444 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch--hhccc
Confidence 999999999999999999988777653 458899999974 456777777766666665544332211 11111
Q ss_pred EEecch------------------------------hHHHHHHHHHHH------HH--hcCCEEEEEeCcHHHHHHHHHH
Q 047890 680 VEVVPQ------------------------------MEKERRLQQILR------AQ--ERGSRVIIFCSTKRLCDQLARS 721 (1134)
Q Consensus 680 ~~~v~~------------------------------~ek~~~L~~llk------~~--~~~~kvLVF~nT~~~ae~La~~ 721 (1134)
+.++.. .+.......|++ .+ ....++||||.|+..|+.|.+.
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 111100 000000111111 11 1346899999999999999999
Q ss_pred hcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCC
Q 047890 722 IGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGA 797 (1134)
Q Consensus 722 L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~Gq 797 (1134)
+.. .|.++++|++....+|...++.|+..++++|||||++++||||.++-.+||+.+|....+|+|||||+||+.+
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhh
Confidence 954 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecccchHH
Q 047890 798 TGVAHTFFSEQDSKY 812 (1134)
Q Consensus 798 kG~~ii~~~~~d~~~ 812 (1134)
-|.++.++.....+.
T Consensus 605 mglaislvat~~ekv 619 (725)
T KOG0349|consen 605 MGLAISLVATVPEKV 619 (725)
T ss_pred cceeEEEeeccchhe
Confidence 999999987655443
No 68
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=9.7e-31 Score=313.74 Aligned_cols=331 Identities=26% Similarity=0.289 Sum_probs=233.3
Q ss_pred hHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHH
Q 047890 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQ 546 (1134)
Q Consensus 467 ~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~ 546 (1134)
.....+.--....||.+|.+.+..+| ++++||++|||+|||++++..++.++++.+ ..+|||++|++-|+.|..
T Consensus 50 s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-----~~KiVF~aP~~pLv~QQ~ 123 (746)
T KOG0354|consen 50 SAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-----KGKVVFLAPTRPLVNQQI 123 (746)
T ss_pred hhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC-----cceEEEeeCCchHHHHHH
Confidence 33444433445579999999999999 999999999999999999999999998764 369999999999999999
Q ss_pred HHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccC-CCCeEEEEEcchhhhhccC-chHHH
Q 047890 547 DEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKID-FGQVSLLVLDEADRMLDMG-FEPQI 624 (1134)
Q Consensus 547 ~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~-l~~l~lVVIDEAHrll~~g-f~~~i 624 (1134)
..+..++.. ..+....+|.........+....+|+|+||+.|.+.|...... ++.|.+|||||||+..... +...+
T Consensus 124 a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vm 201 (746)
T KOG0354|consen 124 ACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIM 201 (746)
T ss_pred HHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHH
Confidence 888888765 5566666775444444567778999999999999988765544 5899999999999977655 44444
Q ss_pred HHHHHhCCCCceEEEEeccCchhHHHHHH---hhccC----------------------Ce-------------------
Q 047890 625 RKIVNEMPPHRQTLMYTATWPKDVRKIAS---DLLVN----------------------PV------------------- 660 (1134)
Q Consensus 625 ~~IL~~l~~~~qiLllSATl~~~v~~l~~---~~l~~----------------------~~------------------- 660 (1134)
..++.......|+|+||||+..+...+.. .++.. +.
T Consensus 202 r~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 202 REYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 45555554555999999996543322211 11100 00
Q ss_pred ---------eeeeccchhhh----------ccc----------------------ceeeEEEec----------------
Q 047890 661 ---------QVNIGNVDELA----------ANK----------------------AITQHVEVV---------------- 683 (1134)
Q Consensus 661 ---------~i~i~~~d~l~----------~~~----------------------~i~~~~~~v---------------- 683 (1134)
.+.+....... ... .+...+..+
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~ 361 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALK 361 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchh
Confidence 00000000000 000 000000000
Q ss_pred ------------------------------chhHHHHHHHHHHHHH---hcCCEEEEEeCcHHHHHHHHHHhcC----CC
Q 047890 684 ------------------------------PQMEKERRLQQILRAQ---ERGSRVIIFCSTKRLCDQLARSIGR----NF 726 (1134)
Q Consensus 684 ------------------------------~~~ek~~~L~~llk~~---~~~~kvLVF~nT~~~ae~La~~L~~----~~ 726 (1134)
....|.+.|.+++... ....++||||.+++.|+.|.++|.. .+
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~i 441 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGI 441 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccc
Confidence 0011122222222221 2356899999999999999999863 12
Q ss_pred cEEEe--------cCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCc
Q 047890 727 GAIAI--------HGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGAT 798 (1134)
Q Consensus 727 ~v~~L--------hG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~Gqk 798 (1134)
....+ ..+|++++..++|++|++|+++|||||+++++||||+.|++||.||...++...+||+|| ||+ +.
T Consensus 442 r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~n 519 (746)
T KOG0354|consen 442 KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RN 519 (746)
T ss_pred ccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cC
Confidence 22222 247999999999999999999999999999999999999999999999999999999999 998 56
Q ss_pred ceeEEEecc
Q 047890 799 GVAHTFFSE 807 (1134)
Q Consensus 799 G~~ii~~~~ 807 (1134)
|.|++++..
T Consensus 520 s~~vll~t~ 528 (746)
T KOG0354|consen 520 SKCVLLTTG 528 (746)
T ss_pred CeEEEEEcc
Confidence 788777773
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=3.2e-30 Score=298.64 Aligned_cols=290 Identities=19% Similarity=0.202 Sum_probs=198.1
Q ss_pred HHHHHHHHHHcCCC--EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC----C
Q 047890 483 IQAQTWPIALQGRD--IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS----S 556 (1134)
Q Consensus 483 iQ~eaI~~il~grd--vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~----~ 556 (1134)
||.++++.+.++++ +|++||||+|||++|+++++. ...++|||+|+++|++|+++.++++... .
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~----------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~ 70 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH----------GENDTIALYPTNALIEDQTEAIKEFVDVFKPER 70 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH----------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCC
Confidence 69999999999875 788999999999999988774 1336899999999999999999887632 2
Q ss_pred CCceEEecCCCCCc--hhH----------------H--hhcCCCcEEEeChHHHHHHHHhccc--------CCCCeEEEE
Q 047890 557 RLSCTCLYGGAPKG--PQL----------------R--ELDQGADIVVATPGRLNDILEMKKI--------DFGQVSLLV 608 (1134)
Q Consensus 557 ~i~v~~l~GG~~~~--~~l----------------~--~l~~~~dIIVaTPerL~~lL~~~~l--------~l~~l~lVV 608 (1134)
++.+..+.|....+ ... + .......|+++||+.|..++..... .+..+++||
T Consensus 71 ~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV 150 (357)
T TIGR03158 71 DVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVI 150 (357)
T ss_pred CceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEE
Confidence 45555555542111 000 0 0123578899999999766543211 246899999
Q ss_pred EcchhhhhccCc-----hHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhh--ccCCeeeeeccc-----h--hh-hcc
Q 047890 609 LDEADRMLDMGF-----EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL--LVNPVQVNIGNV-----D--EL-AAN 673 (1134)
Q Consensus 609 IDEAHrll~~gf-----~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~--l~~~~~i~i~~~-----d--~l-~~~ 673 (1134)
|||+|.+..+.. ...+..++.......++|++|||++..+.+.+... +..+..+ +... + ++ ...
T Consensus 151 ~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 151 FDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEADN 229 (357)
T ss_pred EecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhccc
Confidence 999998764331 12333344433345689999999998888777765 2222211 1111 0 00 000
Q ss_pred ---------cceeeEEEecchhHHHHHHHHHHHHH------hcCCEEEEEeCcHHHHHHHHHHhcC---CCcEEEecCCC
Q 047890 674 ---------KAITQHVEVVPQMEKERRLQQILRAQ------ERGSRVIIFCSTKRLCDQLARSIGR---NFGAIAIHGDK 735 (1134)
Q Consensus 674 ---------~~i~~~~~~v~~~ek~~~L~~llk~~------~~~~kvLVF~nT~~~ae~La~~L~~---~~~v~~LhG~m 735 (1134)
..+...+.. ....+...+..+++.+ ..+.++||||+|++.++.+++.|++ ++.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 122222222 2223333333333322 2467999999999999999999975 35688899999
Q ss_pred ChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccC
Q 047890 736 SQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTG 793 (1134)
Q Consensus 736 s~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRag 793 (1134)
++.+|.++ ++.+|||||+++++||||+.+ +|| ++ |.+.+.|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99988765 378999999999999999886 555 45 789999999999986
No 70
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.7e-30 Score=316.22 Aligned_cols=318 Identities=20% Similarity=0.231 Sum_probs=231.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
|. .|+++|..++..++.|+ |+.+.||+|||++|++|++.... .+..|+||+||++||.|.++++..+...
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-------~G~~v~VvTpt~~LA~qd~e~~~~l~~~ 145 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-------EGKGVHLITVNDYLAKRDAEEMGQVYEF 145 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-------cCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 55 69999999999888776 99999999999999999885443 4778999999999999999999999999
Q ss_pred CCCceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhcc------cCCCCeEEEEEcchhhhhccC---------
Q 047890 556 SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMKK------IDFGQVSLLVLDEADRMLDMG--------- 619 (1134)
Q Consensus 556 ~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~~------l~l~~l~lVVIDEAHrll~~g--------- 619 (1134)
.++.+.++.++.......+ ....++|+|+|+.+| .++|.... ..+..+.++||||||.|+=..
T Consensus 146 lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg 224 (790)
T PRK09200 146 LGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISG 224 (790)
T ss_pred cCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeC
Confidence 9999999999887433333 334699999999999 66665432 346789999999999854100
Q ss_pred -------chHHHHHHHHhCC--------------------------------------------------------CC--
Q 047890 620 -------FEPQIRKIVNEMP--------------------------------------------------------PH-- 634 (1134)
Q Consensus 620 -------f~~~i~~IL~~l~--------------------------------------------------------~~-- 634 (1134)
+...+..++..+. .+
T Consensus 225 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~d 304 (790)
T PRK09200 225 KPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVD 304 (790)
T ss_pred CCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 0000000100000 00
Q ss_pred -----------------------------------------------------------ceEEEEeccCchhHHHHHHhh
Q 047890 635 -----------------------------------------------------------RQTLMYTATWPKDVRKIASDL 655 (1134)
Q Consensus 635 -----------------------------------------------------------~qiLllSATl~~~v~~l~~~~ 655 (1134)
..+.+||+|...+..++.+.+
T Consensus 305 YiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y 384 (790)
T PRK09200 305 YIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY 384 (790)
T ss_pred EEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh
Confidence 024455555433333333322
Q ss_pred ccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecC
Q 047890 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHG 733 (1134)
Q Consensus 656 l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG 733 (1134)
-.+.+ .+...... ...... ........+|...|...+... ..+.++||||+|++.++.|+..|.+ ++.+..||+
T Consensus 385 ~l~v~--~IPt~kp~-~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 385 NMEVV--QIPTNRPI-IRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred CCcEE--ECCCCCCc-ccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 22211 11111000 001111 222345566777776666543 5678999999999999999999965 799999999
Q ss_pred CCChhHHHHHHHHHhcCCCCeeeecccceecccc---Ccce-----EEEeecCCCChhhHHHhhhccCcCCCcceeEEEe
Q 047890 734 DKSQGERDWVLNQFRSGKSPILVATDVAARGLDI---KDIR-----VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFF 805 (1134)
Q Consensus 734 ~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDI---p~v~-----~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~ 805 (1134)
++...++..+...++.| .|+|||++++||+|| ++|. +||++++|.+.+.|+||+||+||.|.+|.+++|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99988888887777765 799999999999999 6898 9999999999999999999999999999999999
Q ss_pred cccch
Q 047890 806 SEQDS 810 (1134)
Q Consensus 806 ~~~d~ 810 (1134)
+.+|.
T Consensus 539 s~eD~ 543 (790)
T PRK09200 539 SLEDD 543 (790)
T ss_pred cchHH
Confidence 87654
No 71
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=1.7e-29 Score=318.04 Aligned_cols=334 Identities=18% Similarity=0.182 Sum_probs=217.9
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC
Q 047890 479 SPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS 556 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~ 556 (1134)
.|.|||.+++..++.. ..+||++++|.|||+.+++.+..++.. ....++|||||+ .|+.||..++.+++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-----g~~~rvLIVvP~-sL~~QW~~El~~kF--- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-----GRAERVLILVPE-TLQHQWLVEMLRRF--- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-----CCCCcEEEEcCH-HHHHHHHHHHHHHh---
Confidence 5999999999887654 479999999999999987766555432 234589999997 99999999997643
Q ss_pred CCceEEecCCCCCchhH--HhhcCCCcEEEeChHHHHHHH-HhcccCCCCeEEEEEcchhhhhccC-chHHHHHHHHhCC
Q 047890 557 RLSCTCLYGGAPKGPQL--RELDQGADIVVATPGRLNDIL-EMKKIDFGQVSLLVLDEADRMLDMG-FEPQIRKIVNEMP 632 (1134)
Q Consensus 557 ~i~v~~l~GG~~~~~~l--~~l~~~~dIIVaTPerL~~lL-~~~~l~l~~l~lVVIDEAHrll~~g-f~~~i~~IL~~l~ 632 (1134)
++...++.+........ .......+++|+|.+.|...- ....+.-..+++|||||||++.... -.....+++..+.
T Consensus 223 ~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 223 NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 23333333222111000 011124689999988776421 1122333478999999999987321 1112233333332
Q ss_pred -CCceEEEEeccCch-hH------------------HHH-------------HHhhccCCe-------------------
Q 047890 633 -PHRQTLMYTATWPK-DV------------------RKI-------------ASDLLVNPV------------------- 660 (1134)
Q Consensus 633 -~~~qiLllSATl~~-~v------------------~~l-------------~~~~l~~~~------------------- 660 (1134)
....+|+||||.-. .. ..+ +..++....
T Consensus 303 ~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 303 EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIE 382 (956)
T ss_pred hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchh
Confidence 33468999999321 00 000 000000000
Q ss_pred -------------------------------eeeeccch-hhh-cccceeeEEEe-------------------------
Q 047890 661 -------------------------------QVNIGNVD-ELA-ANKAITQHVEV------------------------- 682 (1134)
Q Consensus 661 -------------------------------~i~i~~~d-~l~-~~~~i~~~~~~------------------------- 682 (1134)
.+.+.+.. .+. ........+.+
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe 462 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPE 462 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHH
Confidence 00000000 000 00000000000
Q ss_pred ------------cchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhc--CCCcEEEecCCCChhHHHHHHHHHh
Q 047890 683 ------------VPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIG--RNFGAIAIHGDKSQGERDWVLNQFR 748 (1134)
Q Consensus 683 ------------v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~--~~~~v~~LhG~ms~~eR~~il~~Fr 748 (1134)
.....|.+.|..+++.. ...|+||||+++..++.|++.|. .++.+..+||+|+..+|+++++.|+
T Consensus 463 ~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 463 QIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 00111233444555443 36799999999999999999994 3788999999999999999999999
Q ss_pred cC--CCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHh
Q 047890 749 SG--KSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEG 822 (1134)
Q Consensus 749 sG--e~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~ 822 (1134)
++ .+.|||||+++++|+|+..+++||+||+||+++.|+||+||++|.|+++.+.+++...+......+.+++.+
T Consensus 542 ~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 542 DEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred cCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 84 599999999999999999999999999999999999999999999999998888766555555555555554
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=7.8e-30 Score=329.30 Aligned_cols=283 Identities=20% Similarity=0.354 Sum_probs=209.4
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
....+|+++|+.+++.++.+++++++||||+|||+ |+++++..+.. .++++|||+||++||.|+++.+++++.
T Consensus 74 ~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------~g~~vLIL~PTreLa~Qi~~~l~~l~~ 146 (1171)
T TIGR01054 74 AVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------KGKRCYIILPTTLLVIQVAEKISSLAE 146 (1171)
T ss_pred hcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------cCCeEEEEeCHHHHHHHHHHHHHHHHH
Confidence 34557999999999999999999999999999997 55555544432 367999999999999999999999987
Q ss_pred CCCCceE---EecCCCCCchh---HHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc----------
Q 047890 555 SSRLSCT---CLYGGAPKGPQ---LRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD---------- 617 (1134)
Q Consensus 555 ~~~i~v~---~l~GG~~~~~~---l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~---------- 617 (1134)
..++.+. +++|+...... +..+.+ +++|||+||++|.+.+.. +.. ++++|||||||+|++
T Consensus 147 ~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~vd~il~ 223 (1171)
T TIGR01054 147 KAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNVDKLLK 223 (1171)
T ss_pred hcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccHHHHHH
Confidence 6665543 45677665443 233443 489999999999887754 222 899999999999998
Q ss_pred -cCchHH-HHHHH----------------------HhCCCCce--EEEEecc-CchhHHHHHHhhccCCeeeeeccchhh
Q 047890 618 -MGFEPQ-IRKIV----------------------NEMPPHRQ--TLMYTAT-WPKDVRKIASDLLVNPVQVNIGNVDEL 670 (1134)
Q Consensus 618 -~gf~~~-i~~IL----------------------~~l~~~~q--iLllSAT-l~~~v~~l~~~~l~~~~~i~i~~~d~l 670 (1134)
.||... +..++ ..++..+| ++++||| ++..++.. ++.+...+.+....
T Consensus 224 llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~---l~r~ll~~~v~~~~-- 298 (1171)
T TIGR01054 224 LLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAK---LFRELLGFEVGGGS-- 298 (1171)
T ss_pred HcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHH---HcccccceEecCcc--
Confidence 577653 44433 23344444 5678999 56555432 23333334443221
Q ss_pred hcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcH---HHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHH
Q 047890 671 AANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTK---RLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQ 746 (1134)
Q Consensus 671 ~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~---~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~ 746 (1134)
.....+.+.+..... +...|..+++.. +..+||||+++ +.|++|+..|.+ ++.+..+||+++ ..++++
T Consensus 299 ~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~ 370 (1171)
T TIGR01054 299 DTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEK 370 (1171)
T ss_pred ccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHH
Confidence 222344444433332 234566666654 46899999999 999999999965 689999999997 368999
Q ss_pred HhcCCCCeeee----cccceeccccCc-ceEEEeecCCC
Q 047890 747 FRSGKSPILVA----TDVAARGLDIKD-IRVVINYDFPN 780 (1134)
Q Consensus 747 FrsGe~~VLVA----Tdvl~~GLDIp~-v~~VI~~d~P~ 780 (1134)
|++|+++|||| |++++||||||+ |++|||||+|.
T Consensus 371 Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 371 FAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999999999 499999999999 89999999985
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.97 E-value=1.2e-29 Score=309.80 Aligned_cols=318 Identities=19% Similarity=0.206 Sum_probs=218.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.++|+|.+++..+..++..|+.++||+|||++|++|++..+. .+..|+||+|+++||.|+.+++..+....++
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL-------~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL-------TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh-------cCCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 356666666666666666899999999999999999765443 3457999999999999999999999888899
Q ss_pred ceEEecCCCC---CchhHHhhcCCCcEEEeChHHH-HHHHHhc------ccCCCCeEEEEEcchhhhhccC---------
Q 047890 559 SCTCLYGGAP---KGPQLRELDQGADIVVATPGRL-NDILEMK------KIDFGQVSLLVLDEADRMLDMG--------- 619 (1134)
Q Consensus 559 ~v~~l~GG~~---~~~~l~~l~~~~dIIVaTPerL-~~lL~~~------~l~l~~l~lVVIDEAHrll~~g--------- 619 (1134)
.+.+++++.. .....+.....++|+|+||++| .++|... ...+..+.++||||||.|+-..
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 9888776522 2233344446799999999999 6766432 3456789999999999875211
Q ss_pred -------chHHHHHHHHhCCCC--------ceEE----------------------------------------------
Q 047890 620 -------FEPQIRKIVNEMPPH--------RQTL---------------------------------------------- 638 (1134)
Q Consensus 620 -------f~~~i~~IL~~l~~~--------~qiL---------------------------------------------- 638 (1134)
+...+..++..+... ...+
T Consensus 221 ~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~d 300 (762)
T TIGR03714 221 APRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKD 300 (762)
T ss_pred CCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 111112222222211 1122
Q ss_pred ---------------------------------------------------------------EEeccCchhHHHHHHhh
Q 047890 639 ---------------------------------------------------------------MYTATWPKDVRKIASDL 655 (1134)
Q Consensus 639 ---------------------------------------------------------------llSATl~~~v~~l~~~~ 655 (1134)
+||+|...+..++.+.|
T Consensus 301 YiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY 380 (762)
T TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380 (762)
T ss_pred eEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh
Confidence 22222222122221111
Q ss_pred ccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecC
Q 047890 656 LVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHG 733 (1134)
Q Consensus 656 l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG 733 (1134)
-.+ .+.+...... ... ...........+|...+...++.. ..+.++||||+|++.++.|+..|.+ ++.+.+||+
T Consensus 381 ~l~--v~~IPt~kp~-~r~-d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 381 SLS--VVKIPTNKPI-IRI-DYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred CCC--EEEcCCCCCe-eee-eCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 100 0000000000 000 001122334455666666655543 5678999999999999999999954 788999999
Q ss_pred CCChhHHHHHHHHHhcCCCCeeeecccceeccccC---------cceEEEeecCCCChhhHHHhhhccCcCCCcceeEEE
Q 047890 734 DKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK---------DIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTF 804 (1134)
Q Consensus 734 ~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp---------~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~ 804 (1134)
++..+++..+.++++.| .|+|||++++||+||+ ++.+||++++|....+ +||+||+||.|.+|.+++|
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE
Confidence 99998888777777666 6999999999999999 9999999999987666 9999999999999999999
Q ss_pred ecccch
Q 047890 805 FSEQDS 810 (1134)
Q Consensus 805 ~~~~d~ 810 (1134)
++.+|.
T Consensus 534 is~eD~ 539 (762)
T TIGR03714 534 VSLEDD 539 (762)
T ss_pred Eccchh
Confidence 987664
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=4e-30 Score=320.88 Aligned_cols=328 Identities=23% Similarity=0.333 Sum_probs=252.6
Q ss_pred HHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 472 l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
...+|+..+++-|.+||..++.|+|+++.++||.||++||.+|++.. ...+|||.|..+|++.....+.+
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----------~gitvVISPL~SLm~DQv~~L~~ 326 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----------GGVTVVISPLISLMQDQVTHLSK 326 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----------CCceEEeccHHHHHHHHHHhhhh
Confidence 34579999999999999999999999999999999999999998753 34899999999999877666644
Q ss_pred hccCCCCceEEecCCCCCchh---HHhhcC---CCcEEEeChHHHHHHH--HhcccCCCC---eEEEEEcchhhhhccC-
Q 047890 552 FGRSSRLSCTCLYGGAPKGPQ---LRELDQ---GADIVVATPGRLNDIL--EMKKIDFGQ---VSLLVLDEADRMLDMG- 619 (1134)
Q Consensus 552 l~~~~~i~v~~l~GG~~~~~~---l~~l~~---~~dIIVaTPerL~~lL--~~~~l~l~~---l~lVVIDEAHrll~~g- 619 (1134)
.+|....+.++...... ...+.. .++|++.||+.+...- ......+.. +.++||||||++..|+
T Consensus 327 ----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 327 ----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred ----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 35777788777655422 233333 3799999999986532 222223334 8899999999999987
Q ss_pred -chHHHHHHHHh--CCCCceEEEEeccCchhHHHHHHhhcc--CCeeeeeccchhhhcccceeeEEEecchhHHHHHHHH
Q 047890 620 -FEPQIRKIVNE--MPPHRQTLMYTATWPKDVRKIASDLLV--NPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQ 694 (1134)
Q Consensus 620 -f~~~i~~IL~~--l~~~~qiLllSATl~~~v~~l~~~~l~--~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ 694 (1134)
|.+.++++... ......+|.+|||.+..+++-+...|. ++. +..... ...++...+..-........+..
T Consensus 403 dFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sf----nR~NL~yeV~~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPE-LFKSSF----NRPNLKYEVSPKTDKDALLDILE 477 (941)
T ss_pred cccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcc-eecccC----CCCCceEEEEeccCccchHHHHH
Confidence 88887765332 223367999999998888754444432 222 211111 12223223222222233444455
Q ss_pred HHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEE
Q 047890 695 ILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVV 773 (1134)
Q Consensus 695 llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~V 773 (1134)
.++.......+||||.++.+|+.++..|.+ .+.+..+|++|+.++|..|.++|..++++|+|||=++++|||.++|..|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 555566778999999999999999999966 5678999999999999999999999999999999999999999999999
Q ss_pred EeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHH
Q 047890 774 INYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVK 818 (1134)
Q Consensus 774 I~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k 818 (1134)
|||.+|.+.+.|+|.+||+||+|....|++|+...|...+..++.
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999999999887766555544
No 75
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.97 E-value=6.3e-30 Score=292.05 Aligned_cols=331 Identities=21% Similarity=0.293 Sum_probs=256.1
Q ss_pred cccchhHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHH
Q 047890 462 VSATLPRVASMHSAGFSSPTPIQAQTWPI-ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRE 540 (1134)
Q Consensus 462 v~v~~~~l~~l~~~Gf~~prpiQ~eaI~~-il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTre 540 (1134)
+.+....-.-|+..|+++|.|+|.-++.. +++|+|.+++.+|+||||++.-++-+..+. ..+.+.|+|+|..+
T Consensus 199 Ldipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l------~~g~KmlfLvPLVA 272 (830)
T COG1202 199 LDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL------SGGKKMLFLVPLVA 272 (830)
T ss_pred cCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH------hCCCeEEEEehhHH
Confidence 33444555667788999999999999976 568999999999999999998777665544 25789999999999
Q ss_pred HHHHHHHHHHHhccCCCCceEEecCCCCCchh----HHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 541 LATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ----LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 541 La~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~----l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
||+|.++.|+.-....++.+.+-+|-...... .......+||||+|++-+..+|... ..+.+++.|||||+|.|.
T Consensus 273 LANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~ 351 (830)
T COG1202 273 LANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLE 351 (830)
T ss_pred hhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeecc
Confidence 99999999987667777777666664432222 1223445899999999998888766 678999999999999888
Q ss_pred ccCchHHHHHH---HHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc-hhHHHHHH
Q 047890 617 DMGFEPQIRKI---VNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP-QMEKERRL 692 (1134)
Q Consensus 617 ~~gf~~~i~~I---L~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~-~~ek~~~L 692 (1134)
+....+.+.-+ |..+.+..|+|.+|||.. +..++++.+-.+.+.+.- ....+..|+.++. ..+|.+++
T Consensus 352 deERG~RLdGLI~RLr~l~~~AQ~i~LSATVg-Np~elA~~l~a~lV~y~~-------RPVplErHlvf~~~e~eK~~ii 423 (830)
T COG1202 352 DEERGPRLDGLIGRLRYLFPGAQFIYLSATVG-NPEELAKKLGAKLVLYDE-------RPVPLERHLVFARNESEKWDII 423 (830)
T ss_pred chhcccchhhHHHHHHHhCCCCeEEEEEeecC-ChHHHHHHhCCeeEeecC-------CCCChhHeeeeecCchHHHHHH
Confidence 76655555444 445567889999999974 456677776554333321 1223445555555 66777777
Q ss_pred HHHHHHH-------hcCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceec
Q 047890 693 QQILRAQ-------ERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764 (1134)
Q Consensus 693 ~~llk~~-------~~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~G 764 (1134)
..+.+.- ....++|||+++++.|..|+..|. +++.+..+|++++-.+|..+...|.++++.++|+|.+++.|
T Consensus 424 ~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AG 503 (830)
T COG1202 424 ARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAG 503 (830)
T ss_pred HHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcC
Confidence 7666532 124689999999999999999995 57899999999999999999999999999999999999999
Q ss_pred cccCcceEEEe---ecCCC-ChhhHHHhhhccCcCC--CcceeEEEecc
Q 047890 765 LDIKDIRVVIN---YDFPN-GVEDYVHRIGRTGRAG--ATGVAHTFFSE 807 (1134)
Q Consensus 765 LDIp~v~~VI~---~d~P~-s~~~yiQRiGRagR~G--qkG~~ii~~~~ 807 (1134)
+|+|...+|+- ++.-| ++.+|.|++||+||-+ ..|++|+++..
T Consensus 504 VDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 504 VDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred CCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 99997665442 33444 8999999999999976 56888888764
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.97 E-value=2.4e-29 Score=305.55 Aligned_cols=316 Identities=21% Similarity=0.240 Sum_probs=231.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|+++|..+...+..|+ |+.+.||+|||++|++|++.... .+..|+||+||++||.|.++++.++....++
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL-------~G~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL-------TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH-------hCCCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 48999999988887766 99999999999999999854332 2447999999999999999999999999999
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhc------ccCCCCeEEEEEcchhhhhcc---------C---
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMK------KIDFGQVSLLVLDEADRMLDM---------G--- 619 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~------~l~l~~l~lVVIDEAHrll~~---------g--- 619 (1134)
.+.+++++.........+ .++|+|+|+.+| +++|..+ .+.+..+.++||||+|+|+-. +
T Consensus 127 sv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 127 SVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred eEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 999999987765443333 489999999999 9988765 346788999999999986420 0
Q ss_pred ---------------------ch---------------HHHHHHH------------------HhC------CCC-----
Q 047890 620 ---------------------FE---------------PQIRKIV------------------NEM------PPH----- 634 (1134)
Q Consensus 620 ---------------------f~---------------~~i~~IL------------------~~l------~~~----- 634 (1134)
|. ..+..++ ..+ ..+
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00 0001000 000 000
Q ss_pred --------------------------------------------------------ceEEEEeccCchhHHHHHHhhccC
Q 047890 635 --------------------------------------------------------RQTLMYTATWPKDVRKIASDLLVN 658 (1134)
Q Consensus 635 --------------------------------------------------------~qiLllSATl~~~v~~l~~~~l~~ 658 (1134)
..+.+||+|...+..++...+-.+
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~ 364 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLE 364 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCC
Confidence 024455555544333333333222
Q ss_pred CeeeeeccchhhhcccceeeEEEecchhHHHHHH-HHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCC
Q 047890 659 PVQVNIGNVDELAANKAITQHVEVVPQMEKERRL-QQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKS 736 (1134)
Q Consensus 659 ~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L-~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms 736 (1134)
.+. +...... ...... ........+|...+ ..+.+....+.+|||||+|++.++.|++.|.+ ++.+.+||++
T Consensus 365 vv~--IPtnkp~-~R~d~~-d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 365 VVV--VPTNRPV-IRKDLS-DLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred EEE--eCCCCCe-eeeeCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 111 1111000 000111 11122334454444 44555567789999999999999999999965 7889999998
Q ss_pred hhHHHHHHHHHhcCCCCeeeecccceeccccCc-------ceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccc
Q 047890 737 QGERDWVLNQFRSGKSPILVATDVAARGLDIKD-------IRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQD 809 (1134)
Q Consensus 737 ~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~-------v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d 809 (1134)
+.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.+...|.|++||+||.|.+|.+.+|++.+|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 779999999999999999999999999999988 5599999999999999999999999999999999999876
Q ss_pred hH
Q 047890 810 SK 811 (1134)
Q Consensus 810 ~~ 811 (1134)
.-
T Consensus 519 ~l 520 (745)
T TIGR00963 519 NL 520 (745)
T ss_pred HH
Confidence 43
No 77
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=3.8e-30 Score=285.28 Aligned_cols=324 Identities=23% Similarity=0.346 Sum_probs=234.5
Q ss_pred cCCCC-CCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 475 AGFSS-PTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 475 ~Gf~~-prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
+|+.+ -++.|+.|+..+.++ .||.+++|||+||++||.+|+|.. +..+||+.|..+|++...+.|.++
T Consensus 15 FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----------~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----------GGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred hCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----------CCeEEEehHHHHHHHHHHHHHHhc
Confidence 34443 489999999999876 699999999999999999998763 338999999999999999988886
Q ss_pred ccCCCCceEEecCCCCCchh---H---HhhcCCCcEEEeChHHHH-----HHHHhcccCCCCeEEEEEcchhhhhccC--
Q 047890 553 GRSSRLSCTCLYGGAPKGPQ---L---RELDQGADIVVATPGRLN-----DILEMKKIDFGQVSLLVLDEADRMLDMG-- 619 (1134)
Q Consensus 553 ~~~~~i~v~~l~GG~~~~~~---l---~~l~~~~dIIVaTPerL~-----~lL~~~~l~l~~l~lVVIDEAHrll~~g-- 619 (1134)
- +.+..+.+..+..+. + ........|++.||+... ++|. ....-+.+.+||+||||++..|+
T Consensus 85 K----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAHCVSQWGHD 159 (641)
T KOG0352|consen 85 K----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAHCVSQWGHD 159 (641)
T ss_pred C----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhhhHhhhccc
Confidence 3 444444444333222 2 222334789999998632 2221 22233457899999999999987
Q ss_pred chHHHHHH--HHhCCCCceEEEEeccCchhHHHHHH-hh-ccCCeeeeeccchhhhcccceeeEEEe-cchhHHHHHHHH
Q 047890 620 FEPQIRKI--VNEMPPHRQTLMYTATWPKDVRKIAS-DL-LVNPVQVNIGNVDELAANKAITQHVEV-VPQMEKERRLQQ 694 (1134)
Q Consensus 620 f~~~i~~I--L~~l~~~~qiLllSATl~~~v~~l~~-~~-l~~~~~i~i~~~d~l~~~~~i~~~~~~-v~~~ek~~~L~~ 694 (1134)
|.+++..+ |...-.+...|.||||....|.+-+- .+ |.+|+.+. .......+ +...+.. ....+....|.+
T Consensus 160 FRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiF--kTP~FR~N--LFYD~~~K~~I~D~~~~LaD 235 (641)
T KOG0352|consen 160 FRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIF--KTPTFRDN--LFYDNHMKSFITDCLTVLAD 235 (641)
T ss_pred cCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhc--cCcchhhh--hhHHHHHHHHhhhHhHhHHH
Confidence 88887765 33344567799999999888865333 22 34444221 11111110 0000000 000111222322
Q ss_pred HHH-HHh------c-----CCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccc
Q 047890 695 ILR-AQE------R-----GSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVA 761 (1134)
Q Consensus 695 llk-~~~------~-----~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl 761 (1134)
+.. .+. . .+--||||.|++.||.++-.|. +++++..+|.++...+|.++-++|.++++.||+||..+
T Consensus 236 F~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SF 315 (641)
T KOG0352|consen 236 FSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSF 315 (641)
T ss_pred HHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEecc
Confidence 222 111 1 1347999999999999999985 58899999999999999999999999999999999999
Q ss_pred eeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHH
Q 047890 762 ARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLV 817 (1134)
Q Consensus 762 ~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~ 817 (1134)
++|+|-++|.+||+++++.++.-|.|..||+||+|+...|-+||..+|...+.-++
T Consensus 316 GMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 316 GMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred ccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877655443
No 78
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=2.5e-29 Score=315.69 Aligned_cols=330 Identities=20% Similarity=0.310 Sum_probs=249.6
Q ss_pred hHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHH
Q 047890 467 PRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQ 546 (1134)
Q Consensus 467 ~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~ 546 (1134)
.+..++.+.|+..|+.||.+|+..+.+|+++||+.+||||||++|++||+..+.+.. ..++|||.||++||....
T Consensus 58 ~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-----~a~AL~lYPtnALa~DQ~ 132 (851)
T COG1205 58 SLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-----SARALLLYPTNALANDQA 132 (851)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-----CccEEEEechhhhHhhHH
Confidence 347888899999999999999999999999999999999999999999999877533 238999999999999999
Q ss_pred HHHHHhccCCC--CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc----ccCCCCeEEEEEcchhhhhccCc
Q 047890 547 DEANKFGRSSR--LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK----KIDFGQVSLLVLDEADRMLDMGF 620 (1134)
Q Consensus 547 ~el~kl~~~~~--i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~----~l~l~~l~lVVIDEAHrll~~gf 620 (1134)
++|+++....+ +.+...+|++...+....+.+.++||++||+.|..++... .+.+.++++|||||+|-.-.- |
T Consensus 133 ~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv-~ 211 (851)
T COG1205 133 ERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-Q 211 (851)
T ss_pred HHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc-c
Confidence 99999987776 6667777776665555667788999999999998755322 234677999999999964331 2
Q ss_pred hH-------HHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc---------
Q 047890 621 EP-------QIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP--------- 684 (1134)
Q Consensus 621 ~~-------~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~--------- 684 (1134)
.. .+..++.......|+|++|||+. +..+++.++......+.+.. + .........+...+
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~-np~e~~~~l~~~~f~~~v~~-~--g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVDE-D--GSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEecccc-ChHHHHHHhcCCcceeeccC-C--CCCCCceEEEEeCCcchhhhhhc
Confidence 22 33334444556889999999985 44556666655444332211 1 11111111111111
Q ss_pred hhHHHHHHHHHHH-HHhcCCEEEEEeCcHHHHHHHHHH----h-cCC----CcEEEecCCCChhHHHHHHHHHhcCCCCe
Q 047890 685 QMEKERRLQQILR-AQERGSRVIIFCSTKRLCDQLARS----I-GRN----FGAIAIHGDKSQGERDWVLNQFRSGKSPI 754 (1134)
Q Consensus 685 ~~ek~~~L~~llk-~~~~~~kvLVF~nT~~~ae~La~~----L-~~~----~~v~~LhG~ms~~eR~~il~~FrsGe~~V 754 (1134)
...+...+..++. .+..+-++|+|+.+++.++.++.. + ... ..+..+++++..++|.+++..|++|++.+
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 1122233333333 345678999999999999999632 2 223 35788999999999999999999999999
Q ss_pred eeecccceeccccCcceEEEeecCCC-ChhhHHHhhhccCcCCCcceeEEEec
Q 047890 755 LVATDVAARGLDIKDIRVVINYDFPN-GVEDYVHRIGRTGRAGATGVAHTFFS 806 (1134)
Q Consensus 755 LVATdvl~~GLDIp~v~~VI~~d~P~-s~~~yiQRiGRagR~GqkG~~ii~~~ 806 (1134)
+|+|++++-||||.+++.||++..|. +..+++|+.||+||.++....++++.
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999999 89999999999999997666665554
No 79
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.4e-29 Score=302.00 Aligned_cols=332 Identities=21% Similarity=0.312 Sum_probs=248.1
Q ss_pred HHHcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhc---CCCCCCCEEEEEcccHHHHHHHHH
Q 047890 472 MHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLH---NNPRNGPTVLVLAPTRELATQIQD 547 (1134)
Q Consensus 472 l~~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~---~~~~~g~kvLVLvPTreLa~Q~~~ 547 (1134)
..-++|.++..+|.+++|.+++. .++||+||||+|||.+|++.|+..+++.. +......|+|+|+|+++||..+++
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 34468889999999999999864 79999999999999999999999988521 122357899999999999999999
Q ss_pred HHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcc---cCCCCeEEEEEcchhhhhccCchHHH
Q 047890 548 EANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKK---IDFGQVSLLVLDEADRMLDMGFEPQI 624 (1134)
Q Consensus 548 el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~---l~l~~l~lVVIDEAHrll~~gf~~~i 624 (1134)
.+.+-+...++.|..++|++...... ...++|||+||+++.-.-.+.. ..+..+.+|||||+|.|-+ ...+.+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvl 258 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVL 258 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchH
Confidence 99888788899999999998654332 2348999999999854332222 2356789999999996554 456666
Q ss_pred HHHHHhC-------CCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchh--------HHH
Q 047890 625 RKIVNEM-------PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQM--------EKE 689 (1134)
Q Consensus 625 ~~IL~~l-------~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~--------ek~ 689 (1134)
+.|+... ....++|++|||+| +.++++..+-.++ ...+..++..-....+.+.+...... ...
T Consensus 259 EtiVaRtlr~vessqs~IRivgLSATlP-N~eDvA~fL~vn~-~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~ 336 (1230)
T KOG0952|consen 259 ETIVARTLRLVESSQSMIRIVGLSATLP-NYEDVARFLRVNP-YAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDE 336 (1230)
T ss_pred HHHHHHHHHHHHhhhhheEEEEeeccCC-CHHHHHHHhcCCC-ccceeeecccccccceeeeEEeeecccchhhhhhHHH
Confidence 6665543 34568999999997 5666766554442 22233334444444455555444333 223
Q ss_pred HHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-----------------C-------CcEEEecCCCChhHHHHHHH
Q 047890 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-----------------N-------FGAIAIHGDKSQGERDWVLN 745 (1134)
Q Consensus 690 ~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-----------------~-------~~v~~LhG~ms~~eR~~il~ 745 (1134)
.+..++++.+..+..|+|||.++..+.+.++.|.+ . ....++|++|...+|..+.+
T Consensus 337 ~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 337 VCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 45667777788899999999998877777776632 0 24667899999999999999
Q ss_pred HHhcCCCCeeeecccceeccccCcceEEEe----ecCCC------ChhhHHHhhhccCcC--CCcceeEEEecccc
Q 047890 746 QFRSGKSPILVATDVAARGLDIKDIRVVIN----YDFPN------GVEDYVHRIGRTGRA--GATGVAHTFFSEQD 809 (1134)
Q Consensus 746 ~FrsGe~~VLVATdvl~~GLDIp~v~~VI~----~d~P~------s~~~yiQRiGRagR~--GqkG~~ii~~~~~d 809 (1134)
.|..|.++||+||..++.|+|+|.-.++|- ||.-. +.-+.+|..||+||- +..|.++++.+.+.
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccH
Confidence 999999999999999999999997766662 44322 466789999999994 56788888776543
No 80
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.1e-28 Score=301.97 Aligned_cols=345 Identities=22% Similarity=0.283 Sum_probs=273.0
Q ss_pred CCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 479 SPTPIQAQTWPIALQG------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~g------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
.-|+.|..||..+++. .|-|||++.|.|||.+++-+++.... .++.|.|||||.-||+|.++.|++-
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-------~GKQVAvLVPTTlLA~QHy~tFkeR 666 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-------DGKQVAVLVPTTLLAQQHYETFKER 666 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-------CCCeEEEEcccHHhHHHHHHHHHHH
Confidence 3699999999999865 58899999999999999988887664 6789999999999999999999998
Q ss_pred ccCCCCceEEecCCCCCc---hhHHhhcCC-CcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHH
Q 047890 553 GRSSRLSCTCLYGGAPKG---PQLRELDQG-ADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIV 628 (1134)
Q Consensus 553 ~~~~~i~v~~l~GG~~~~---~~l~~l~~~-~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL 628 (1134)
.....|++..+..=.... ..++.+..+ .||||+|. -|-.+.+.+.++++|||||-|+ |...-++-+
T Consensus 667 F~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEEqR-----FGVk~KEkL 736 (1139)
T COG1197 667 FAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEEQR-----FGVKHKEKL 736 (1139)
T ss_pred hcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEechhh-----cCccHHHHH
Confidence 888889988876544333 334445544 89999994 3335677889999999999999 777778888
Q ss_pred HhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEE
Q 047890 629 NEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIF 708 (1134)
Q Consensus 629 ~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF 708 (1134)
..+..+.-+|-||||.-+....+...-+.+...|...-.+. ..+ ...+.+.+...+-..|++++.++++|...
T Consensus 737 K~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R----~pV---~T~V~~~d~~~ireAI~REl~RgGQvfYv 809 (1139)
T COG1197 737 KELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR----LPV---KTFVSEYDDLLIREAILRELLRGGQVFYV 809 (1139)
T ss_pred HHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC----cce---EEEEecCChHHHHHHHHHHHhcCCEEEEE
Confidence 88899999999999976665555554444433332211111 111 12334445556667888899999999999
Q ss_pred eCcHHHHHHHHHHhcC---CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCC-Chhh
Q 047890 709 CSTKRLCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPN-GVED 784 (1134)
Q Consensus 709 ~nT~~~ae~La~~L~~---~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~-s~~~ 784 (1134)
+|.++.++.+++.|.+ ...+.+.||.|+..+-++++..|.+|+++|||||.+++.|||||++|.+|.-+... .+++
T Consensus 810 ~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQ 889 (1139)
T COG1197 810 HNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQ 889 (1139)
T ss_pred ecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHH
Confidence 9999999999999876 45688999999999999999999999999999999999999999999988777654 7899
Q ss_pred HHHhhhccCcCCCcceeEEEeccc--chHHHHHHHHHHHh---hcCCCCHHHHHHHhhcCCC--CcccCCC
Q 047890 785 YVHRIGRTGRAGATGVAHTFFSEQ--DSKYAADLVKVLEG---ANQHVPPEVRDMALRCGPG--FGKDRGG 848 (1134)
Q Consensus 785 yiQRiGRagR~GqkG~~ii~~~~~--d~~~~~~l~k~L~~---~~~~lp~~l~dla~r~g~g--~Gk~~gG 848 (1134)
+.|..||+||..+.+.||+++... -.+.+.+.++.|.+ -+..+..++.||.+| |.| .|.++.|
T Consensus 890 LyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIR-GaGNlLG~eQSG 959 (1139)
T COG1197 890 LYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIR-GAGNLLGEEQSG 959 (1139)
T ss_pred HHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhcc-ccccccCccccC
Confidence 999999999999999999999743 34455555555544 466788999999999 444 5554433
No 81
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=3.6e-28 Score=288.47 Aligned_cols=299 Identities=24% Similarity=0.288 Sum_probs=204.8
Q ss_pred CCCCHHHHHHHHHHHc----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 478 SSPTPIQAQTWPIALQ----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.+|+++|++|+..+.. .+..|+++|||+|||++++..+... ..++|||||+++|+.||++.+.++.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL----------KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh----------cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 4599999999999998 8999999999999999877655443 2249999999999999998888765
Q ss_pred cCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCC
Q 047890 554 RSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPP 633 (1134)
Q Consensus 554 ~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~ 633 (1134)
... ..+..+ ++.... +.. ..|+|+|.+.+........+..+.+++|||||||++.... ...+++.+..
T Consensus 105 ~~~-~~~g~~-~~~~~~-----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~~ 172 (442)
T COG1061 105 LLN-DEIGIY-GGGEKE-----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLSA 172 (442)
T ss_pred CCc-ccccee-cCceec-----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhhc
Confidence 432 122223 332221 111 4699999998877532234445579999999999987543 3344444433
Q ss_pred CceEEEEeccCchhHH---HHHHhhccCCeeeeeccchhhhcccceee-EEEec----c---------------------
Q 047890 634 HRQTLMYTATWPKDVR---KIASDLLVNPVQVNIGNVDELAANKAITQ-HVEVV----P--------------------- 684 (1134)
Q Consensus 634 ~~qiLllSATl~~~v~---~l~~~~l~~~~~i~i~~~d~l~~~~~i~~-~~~~v----~--------------------- 684 (1134)
...+|+||||++.... ..+..++ .++.+.+...+.+. ...+.. .+..+ .
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~-~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELID-EGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHh-CCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 3338999999653321 1111111 12222222211111 011110 00000 0
Q ss_pred ---------------hhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHhc
Q 047890 685 ---------------QMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRS 749 (1134)
Q Consensus 685 ---------------~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~Frs 749 (1134)
...+...+..++.....+.++||||.++.+++.++..|...-.+..+.+..+..+|..+++.|+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHc
Confidence 00011112222222224679999999999999999999764338899999999999999999999
Q ss_pred CCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCc-CCCcce
Q 047890 750 GKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGR-AGATGV 800 (1134)
Q Consensus 750 Ge~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR-~GqkG~ 800 (1134)
|++++||++.++.+|+|+|+++++|......|...|+||+||+.| ...++.
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999 433443
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=1.7e-27 Score=298.36 Aligned_cols=311 Identities=21% Similarity=0.262 Sum_probs=207.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC-
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS- 556 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~- 556 (1134)
..|+|+|+.+.........+||.||||+|||.++++.+..++.. ....+++|..||++++++++++++++....
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-----GLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 47999999886554445668999999999999988877665542 134589999999999999999988643321
Q ss_pred -CCceEEecCCCCCchhH---------------------Hhhc---C---CCcEEEeChHHHHHHH-HhcccCCCC----
Q 047890 557 -RLSCTCLYGGAPKGPQL---------------------RELD---Q---GADIVVATPGRLNDIL-EMKKIDFGQ---- 603 (1134)
Q Consensus 557 -~i~v~~l~GG~~~~~~l---------------------~~l~---~---~~dIIVaTPerL~~lL-~~~~l~l~~---- 603 (1134)
...+.+++|........ .-+. + -.+|+|+|.+.++..+ ..+...+..
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 24566666654311100 0011 1 1689999998876433 222222222
Q ss_pred eEEEEEcchhhhhccCchHHHHHHHHhC-CCCceEEEEeccCchhHHHHHHhhccCC--e-------eeeecc---chh-
Q 047890 604 VSLLVLDEADRMLDMGFEPQIRKIVNEM-PPHRQTLMYTATWPKDVRKIASDLLVNP--V-------QVNIGN---VDE- 669 (1134)
Q Consensus 604 l~lVVIDEAHrll~~gf~~~i~~IL~~l-~~~~qiLllSATl~~~v~~l~~~~l~~~--~-------~i~i~~---~d~- 669 (1134)
-++|||||+|.+ +......+..+++.+ .....+|+||||+|...++.+...+... . .++... ...
T Consensus 440 ~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 440 RSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred cCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 358999999975 333344555555544 2345699999999988775444322110 0 000000 000
Q ss_pred -hhcc---cceeeEEEe--c--ch-hHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCC----CcEEEecCCCC
Q 047890 670 -LAAN---KAITQHVEV--V--PQ-MEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN----FGAIAIHGDKS 736 (1134)
Q Consensus 670 -l~~~---~~i~~~~~~--v--~~-~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~----~~v~~LhG~ms 736 (1134)
+... ......+.+ . .. ......+..+++....++++||||||++.|+.+++.|.+. +.+..+|+.++
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 0000 001111111 1 11 2234556677777778899999999999999999999753 46899999999
Q ss_pred hhHH----HHHHHHH-hcCC---CCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCC
Q 047890 737 QGER----DWVLNQF-RSGK---SPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGA 797 (1134)
Q Consensus 737 ~~eR----~~il~~F-rsGe---~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~Gq 797 (1134)
..+| +++++.| ++++ ..|||||+++++|||| ++++||....| .+.++||+||++|.+.
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9998 4577888 6666 4699999999999999 58999987776 7899999999999875
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=3.1e-27 Score=293.40 Aligned_cols=310 Identities=22% Similarity=0.254 Sum_probs=217.4
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 479 SPTPIQAQTWPIALQG---RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~g---rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
.|+++|.++++.++++ +++|+.++||||||.+|+.++...+. .+.++|||+|+++|+.|+++.|++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-------~g~~vLvLvPt~~L~~Q~~~~l~~~f-- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-------QGKQALVLVPEIALTPQMLARFRARF-- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-------cCCeEEEEeCcHHHHHHHHHHHHHHh--
Confidence 5999999999999984 78999999999999999888777665 35689999999999999999998854
Q ss_pred CCCceEEecCCCCCchhHHh----hcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCch---HHHH--H
Q 047890 556 SRLSCTCLYGGAPKGPQLRE----LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFE---PQIR--K 626 (1134)
Q Consensus 556 ~~i~v~~l~GG~~~~~~l~~----l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~---~~i~--~ 626 (1134)
++.+..++++.+..+.... .....+|||+|+..+. +.+.++++|||||+|........ -..+ .
T Consensus 215 -g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va 286 (679)
T PRK05580 215 -GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA 286 (679)
T ss_pred -CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH
Confidence 4578888888765443322 2345799999997764 35678999999999986543211 0111 2
Q ss_pred HHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchh----------HHHHHHHHHH
Q 047890 627 IVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQM----------EKERRLQQIL 696 (1134)
Q Consensus 627 IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~----------ek~~~L~~ll 696 (1134)
++.....+.++|++|||.+.+....+.. .....+.+.... ....+ ..+.++... -....+..+.
T Consensus 287 ~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~---~~~~~-p~v~~id~~~~~~~~~~~~ls~~l~~~i~ 360 (679)
T PRK05580 287 VVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRA---GGARL-PEVEIIDMRELLRGENGSFLSPPLLEAIK 360 (679)
T ss_pred HHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEecccc---ccCCC-CeEEEEechhhhhhcccCCCCHHHHHHHH
Confidence 2333456778999999976444333221 111111111110 00000 011111110 1123455566
Q ss_pred HHHhcCCEEEEEeCcHH------------------------------------------------------------HHH
Q 047890 697 RAQERGSRVIIFCSTKR------------------------------------------------------------LCD 716 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~------------------------------------------------------------~ae 716 (1134)
+.+..++++|||+|++. -++
T Consensus 361 ~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e 440 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTE 440 (679)
T ss_pred HHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHH
Confidence 66777889999987521 345
Q ss_pred HHHHHhcC---CCcEEEecCCCCh--hHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCC--CC--------
Q 047890 717 QLARSIGR---NFGAIAIHGDKSQ--GERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFP--NG-------- 781 (1134)
Q Consensus 717 ~La~~L~~---~~~v~~LhG~ms~--~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P--~s-------- 781 (1134)
++++.|.+ ++.+..+|++++. +++++++++|++|+++|||+|+++++|+|++++++|+.+|.+ .+
T Consensus 441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~E 520 (679)
T PRK05580 441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASE 520 (679)
T ss_pred HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHH
Confidence 66666654 4578999999874 578999999999999999999999999999999998665543 22
Q ss_pred --hhhHHHhhhccCcCCCcceeEEEecccchH
Q 047890 782 --VEDYVHRIGRTGRAGATGVAHTFFSEQDSK 811 (1134)
Q Consensus 782 --~~~yiQRiGRagR~GqkG~~ii~~~~~d~~ 811 (1134)
...|+|++||+||.++.|.+++.....+..
T Consensus 521 r~~~~l~q~~GRagR~~~~g~viiqT~~p~~~ 552 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHP 552 (679)
T ss_pred HHHHHHHHHHhhccCCCCCCEEEEEeCCCCCH
Confidence 256899999999999999999887665543
No 84
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=8.3e-28 Score=306.20 Aligned_cols=300 Identities=20% Similarity=0.309 Sum_probs=205.8
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc----cHHHHHHHHHHHHH-hccCCC
Q 047890 483 IQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP----TRELATQIQDEANK-FGRSSR 557 (1134)
Q Consensus 483 iQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP----TreLa~Q~~~el~k-l~~~~~ 557 (1134)
+-.+.+..+..++.+||+++||||||. .+|.+.+.. .. .....+++.-| +++||.++.+++.. ++...+
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~--g~--g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL--GR--GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc--CC--CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 334556666666778888999999998 466443321 11 11224444556 57899999998875 443333
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchh-hhhccCchHH-HHHHHHhCCCCc
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEAD-RMLDMGFEPQ-IRKIVNEMPPHR 635 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAH-rll~~gf~~~-i~~IL~~l~~~~ 635 (1134)
+.+ ... ......+.|+|+|+++|++.+.... .+.++++||||||| ++++.+|... ++.++.. .++.
T Consensus 152 Y~v-------rf~---~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdl 219 (1294)
T PRK11131 152 YKV-------RFN---DQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDL 219 (1294)
T ss_pred eee-------cCc---cccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CCCc
Confidence 221 111 1123458999999999999887544 48999999999999 6888887643 4444433 3467
Q ss_pred eEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchh---HHHHHHHHHHHH---H--hcCCEEEE
Q 047890 636 QTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQM---EKERRLQQILRA---Q--ERGSRVII 707 (1134)
Q Consensus 636 qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~---ek~~~L~~llk~---~--~~~~kvLV 707 (1134)
++|+||||++. ..+.+.+...+ .+.+.... ..+...+..+... .+.+.+..++.. + ...+.+||
T Consensus 220 KvILmSATid~--e~fs~~F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999999964 45555554433 34442211 1122232222111 122233333322 1 23578999
Q ss_pred EeCcHHHHHHHHHHhcC-C---CcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeec------
Q 047890 708 FCSTKRLCDQLARSIGR-N---FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYD------ 777 (1134)
Q Consensus 708 F~nT~~~ae~La~~L~~-~---~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d------ 777 (1134)
||+++.+++.+++.|.+ + +.+..+|++++.++|.++++. .+..+|||||+++++||||++|++||+++
T Consensus 292 FLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~ 369 (1294)
T PRK11131 292 FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISR 369 (1294)
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccc
Confidence 99999999999999965 2 347789999999999999886 47889999999999999999999999986
Q ss_pred ---------CC---CChhhHHHhhhccCcCCCcceeEEEecccchH
Q 047890 778 ---------FP---NGVEDYVHRIGRTGRAGATGVAHTFFSEQDSK 811 (1134)
Q Consensus 778 ---------~P---~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~ 811 (1134)
+| .|.++|+||+||+||. .+|.||.+|++.+..
T Consensus 370 Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 370 YSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 23 3557899999999999 799999999876543
No 85
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=5.6e-28 Score=264.03 Aligned_cols=338 Identities=20% Similarity=0.314 Sum_probs=252.6
Q ss_pred ccccchhHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccH
Q 047890 461 EVSATLPRVASMHS-AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTR 539 (1134)
Q Consensus 461 ev~v~~~~l~~l~~-~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTr 539 (1134)
++.+.+++-+.|.+ +...+++|.|.++|+..+.+.+++++.|||.||++||.+|++. ....+|||||..
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~----------adg~alvi~pli 144 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC----------ADGFALVICPLI 144 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh----------cCCceEeechhH
Confidence 44555544333322 3456789999999999999999999999999999999999876 345899999999
Q ss_pred HHHHHHHHHHHHhccCCCCceEEecCCCCCchh--HH----hhcCCCcEEEeChHHHHHHH---H--hcccCCCCeEEEE
Q 047890 540 ELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ--LR----ELDQGADIVVATPGRLNDIL---E--MKKIDFGQVSLLV 608 (1134)
Q Consensus 540 eLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~--l~----~l~~~~dIIVaTPerL~~lL---~--~~~l~l~~l~lVV 608 (1134)
+|++...-.++.++.. ...+...+++.+. .. .-.....+|+.||+.|...- . .+.+....+.+|-
T Consensus 145 slmedqil~lkqlgi~----as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ia 220 (695)
T KOG0353|consen 145 SLMEDQILQLKQLGID----ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIA 220 (695)
T ss_pred HHHHHHHHHHHHhCcc----hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEe
Confidence 9999988888887643 3333332222211 11 11234789999999985531 1 2345567789999
Q ss_pred EcchhhhhccC--chHHHHH--HHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc
Q 047890 609 LDEADRMLDMG--FEPQIRK--IVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP 684 (1134)
Q Consensus 609 IDEAHrll~~g--f~~~i~~--IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~ 684 (1134)
|||+|+...|+ |.+.+.. ||..-.+...+|++|||.+..+.+-++.++.-...+++.. .....++...+.. .
T Consensus 221 idevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a---~fnr~nl~yev~q-k 296 (695)
T KOG0353|consen 221 IDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA---GFNRPNLKYEVRQ-K 296 (695)
T ss_pred ecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec---ccCCCCceeEeee-C
Confidence 99999999886 6666553 4555567778999999998888877776654322222211 0111223222222 2
Q ss_pred hhHHHHHHHHHHHHHh---cCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeeccc
Q 047890 685 QMEKERRLQQILRAQE---RGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDV 760 (1134)
Q Consensus 685 ~~ek~~~L~~llk~~~---~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdv 760 (1134)
.....+.+++|.+.++ .+..-||||-+.+.|+.++..|+. ++.+..+|..|...++.-+...|..|++.|+|+|-+
T Consensus 297 p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEee
Confidence 2334455666665554 467889999999999999999954 678889999999999999999999999999999999
Q ss_pred ceeccccCcceEEEeecCCCChhhHHH-------------------------------------------hhhccCcCCC
Q 047890 761 AARGLDIKDIRVVINYDFPNGVEDYVH-------------------------------------------RIGRTGRAGA 797 (1134)
Q Consensus 761 l~~GLDIp~v~~VI~~d~P~s~~~yiQ-------------------------------------------RiGRagR~Gq 797 (1134)
+++|||-|+|.+||+-.+|.++++|.| ..||+||++.
T Consensus 377 fgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~ 456 (695)
T KOG0353|consen 377 FGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM 456 (695)
T ss_pred ecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC
Confidence 999999999999999999999999999 6799999999
Q ss_pred cceeEEEecccchHHHHHH
Q 047890 798 TGVAHTFFSEQDSKYAADL 816 (1134)
Q Consensus 798 kG~~ii~~~~~d~~~~~~l 816 (1134)
+..|++||--.|......+
T Consensus 457 ~a~cilyy~~~difk~ssm 475 (695)
T KOG0353|consen 457 KADCILYYGFADIFKISSM 475 (695)
T ss_pred cccEEEEechHHHHhHHHH
Confidence 9999999987765544433
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=5.3e-26 Score=273.44 Aligned_cols=292 Identities=20% Similarity=0.237 Sum_probs=196.5
Q ss_pred EEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHh--
Q 047890 498 VAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE-- 575 (1134)
Q Consensus 498 Ll~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~-- 575 (1134)
||.++||||||++|+..+...+. .+.++|||+|+++|+.|+++.|++.+ +..+.+++++....+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA-------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHH
Confidence 57899999999999877666554 46689999999999999999998754 3567777877654433222
Q ss_pred -h-cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC-----ch-HHHHHHHHhCCCCceEEEEeccCchh
Q 047890 576 -L-DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG-----FE-PQIRKIVNEMPPHRQTLMYTATWPKD 647 (1134)
Q Consensus 576 -l-~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g-----f~-~~i~~IL~~l~~~~qiLllSATl~~~ 647 (1134)
+ ...++|||+|+..|. ..+.++++|||||+|....+. |. ..+.. +.....+.++|++|||...+
T Consensus 71 ~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~-~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAV-YRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHH-HHHHhcCCCEEEEeCCCCHH
Confidence 2 235799999987663 346789999999999876432 11 12222 22333567799999996544
Q ss_pred HHHHHHhhccCCeeeeeccchhhhcccceeeEEEecch----hHHHHHHHHHHHHHhcCCEEEEEeCcHHH---------
Q 047890 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ----MEKERRLQQILRAQERGSRVIIFCSTKRL--------- 714 (1134)
Q Consensus 648 v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~----~ek~~~L~~llk~~~~~~kvLVF~nT~~~--------- 714 (1134)
....+.. .....+.+.......... ....+.+... .-....+..+.+.+..++++|||+|++..
T Consensus 143 s~~~~~~--g~~~~~~l~~r~~~~~~p-~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 143 SYHNAKQ--KAYRLLVLTRRVSGRKPP-EVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHhc--CCeEEeechhhhcCCCCC-eEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 3332221 111111111000000000 0011111111 11134556666777788999999876532
Q ss_pred ---------------------------------------------------HHHHHHHhcC---CCcEEEecCCCChhHH
Q 047890 715 ---------------------------------------------------CDQLARSIGR---NFGAIAIHGDKSQGER 740 (1134)
Q Consensus 715 ---------------------------------------------------ae~La~~L~~---~~~v~~LhG~ms~~eR 740 (1134)
.+++++.|.+ +..+..+|++++..++
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 3666666655 4578999999987765
Q ss_pred --HHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCC------------ChhhHHHhhhccCcCCCcceeEEEec
Q 047890 741 --DWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPN------------GVEDYVHRIGRTGRAGATGVAHTFFS 806 (1134)
Q Consensus 741 --~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~------------s~~~yiQRiGRagR~GqkG~~ii~~~ 806 (1134)
+++++.|++|+++|||+|+++++|+|+++|++|+.+|... ....|+|++||+||.++.|.+++...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999986544331 24578999999999999999987765
Q ss_pred ccch
Q 047890 807 EQDS 810 (1134)
Q Consensus 807 ~~d~ 810 (1134)
..+.
T Consensus 380 ~p~~ 383 (505)
T TIGR00595 380 NPNH 383 (505)
T ss_pred CCCC
Confidence 5443
No 87
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=8.2e-26 Score=285.60 Aligned_cols=328 Identities=19% Similarity=0.228 Sum_probs=221.1
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWPIAL----QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~il----~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+|++||.++|.+++ .+.++||+++||+|||+..+..+..+ .... .....+|||||. +|+.+|.++|++|+.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L-~~~~---~~~gp~LIVvP~-SlL~nW~~Ei~kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYL-HEYR---GITGPHMVVAPK-STLGNWMNEIRRFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHH-HHhc---CCCCCEEEEeCh-HHHHHHHHHHHHHCC
Confidence 68999999999986 46789999999999999876554433 2211 123468999996 888999999999975
Q ss_pred CCCCceEEecCCCCCchhHH-h--hcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhC
Q 047890 555 SSRLSCTCLYGGAPKGPQLR-E--LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM 631 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~-~--l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l 631 (1134)
. +.++.++|......... . ....++|||+|++.+..... .+....+++|||||||+|.+. ...+.+++..+
T Consensus 244 ~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 244 V--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred C--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 3 55666666433222111 1 12357999999998876432 233346889999999998764 34455566666
Q ss_pred CCCceEEEEeccCc-hhHHHHH---H-------------------------------------hhccC------------
Q 047890 632 PPHRQTLMYTATWP-KDVRKIA---S-------------------------------------DLLVN------------ 658 (1134)
Q Consensus 632 ~~~~qiLllSATl~-~~v~~l~---~-------------------------------------~~l~~------------ 658 (1134)
... .+|+||+|.- ..+.++. . .++..
T Consensus 318 ~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 STN-YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred hcC-cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 443 4799999932 1111111 0 00000
Q ss_pred C--eeeeeccch---------------hh-------------hcccceeeEEE----------------ecchhHHHHHH
Q 047890 659 P--VQVNIGNVD---------------EL-------------AANKAITQHVE----------------VVPQMEKERRL 692 (1134)
Q Consensus 659 ~--~~i~i~~~d---------------~l-------------~~~~~i~~~~~----------------~v~~~ek~~~L 692 (1134)
. ..+.+.... .+ .....+|.+.. ++....|...|
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 0 000000000 00 00000111100 01112344445
Q ss_pred HHHHHHHh-cCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcC---CCCeeeecccceecccc
Q 047890 693 QQILRAQE-RGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSG---KSPILVATDVAARGLDI 767 (1134)
Q Consensus 693 ~~llk~~~-~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsG---e~~VLVATdvl~~GLDI 767 (1134)
..++..+. .+.+|||||.....++.|.+.|. +++.++.|+|+++..+|..+++.|++. .+.+||+|.+++.|||+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 55555443 46799999999999999999884 578899999999999999999999863 34578999999999999
Q ss_pred CcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHH
Q 047890 768 KDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVK 818 (1134)
Q Consensus 768 p~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k 818 (1134)
..+++||+||++|++..++|++||++|.|++..|++|..-....+.+++++
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIle 607 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIE 607 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHH
Confidence 999999999999999999999999999999988877765444444444443
No 88
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.94 E-value=1.6e-25 Score=238.27 Aligned_cols=201 Identities=49% Similarity=0.806 Sum_probs=178.4
Q ss_pred cccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccH
Q 047890 460 HEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTR 539 (1134)
Q Consensus 460 ~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTr 539 (1134)
+++.+...+++.+.+.||..|+++|.++++.+++++++|++++||+|||++|+++++..+.... ...++++|||+|++
T Consensus 2 ~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~--~~~~~~viii~p~~ 79 (203)
T cd00268 2 EELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP--KKDGPQALILAPTR 79 (203)
T ss_pred CcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--ccCCceEEEEcCCH
Confidence 4556677788999999999999999999999999999999999999999999999988776532 12467999999999
Q ss_pred HHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC
Q 047890 540 ELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG 619 (1134)
Q Consensus 540 eLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g 619 (1134)
+|+.|+.+.++++....++.+..++++.........+...++|+|+|++.|.+++....+.+.++++|||||+|.+.+.+
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC
Confidence 99999999999998777888888998887766666666689999999999999998888888999999999999999888
Q ss_pred chHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeee
Q 047890 620 FEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQV 662 (1134)
Q Consensus 620 f~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i 662 (1134)
+...+..++..+...++++++|||+++.+..++..++.+++.+
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999998899999999999999999998888877654
No 89
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=3.6e-25 Score=283.25 Aligned_cols=311 Identities=17% Similarity=0.244 Sum_probs=207.4
Q ss_pred cCCCCCCHHHH---HHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 475 AGFSSPTPIQA---QTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 475 ~Gf~~prpiQ~---eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
..|...-|+.. +.+..+..+..+||+++||||||.. +|.+.+.. ......+|++.-|.+.-|..+.+.+.+
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~----~~~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLEL----GRGSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHc----CCCCCceEecCCccHHHHHHHHHHHHH
Confidence 34554444444 4556666667788899999999984 46443321 111233677777877766666655544
Q ss_pred hccCCCCceEEecCCC-CCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchh-hhhccCchHH-HHHHH
Q 047890 552 FGRSSRLSCTCLYGGA-PKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEAD-RMLDMGFEPQ-IRKIV 628 (1134)
Q Consensus 552 l~~~~~i~v~~l~GG~-~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAH-rll~~gf~~~-i~~IL 628 (1134)
.. +..+...+|.. ..+. .....+.|+|+|++.|+..+.... .+.++++||||||| ++++.+|.-. ++.++
T Consensus 134 el---g~~lG~~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il 206 (1283)
T TIGR01967 134 EL---GTPLGEKVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLL 206 (1283)
T ss_pred Hh---CCCcceEEeeEEcCCc---ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHH
Confidence 32 12222222211 1111 123457899999999999886543 47899999999999 6888877654 55555
Q ss_pred HhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecch------hHHHHHHHHHHHHH--h
Q 047890 629 NEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ------MEKERRLQQILRAQ--E 700 (1134)
Q Consensus 629 ~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~------~ek~~~L~~llk~~--~ 700 (1134)
.. .++.++|+||||++ ...+.+.+...++ +.+.... ..+..++..... .++...+..++..+ .
T Consensus 207 ~~-rpdLKlIlmSATld--~~~fa~~F~~apv-I~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~ 277 (1283)
T TIGR01967 207 PR-RPDLKIIITSATID--PERFSRHFNNAPI-IEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE 277 (1283)
T ss_pred hh-CCCCeEEEEeCCcC--HHHHHHHhcCCCE-EEECCCc-----ccceeEEecccccccchhhhHHHHHHHHHHHHHhh
Confidence 44 35778999999986 3456655544333 3332211 111222221111 12222233333222 2
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEee
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINY 776 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~ 776 (1134)
..+.+|||++++.+++.+++.|.+ .+.+..+||+++.+++.++++.+ +..+|||||+++++||||++|++||++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeC
Confidence 357899999999999999999964 34588899999999999986654 347899999999999999999999998
Q ss_pred cCC------------------CChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 777 DFP------------------NGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 777 d~P------------------~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
+++ .|.++|+||+||+||.+ +|.||.++++.+.
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 843 25579999999999997 9999999987654
No 90
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.94 E-value=7e-25 Score=266.19 Aligned_cols=330 Identities=17% Similarity=0.230 Sum_probs=228.1
Q ss_pred chhHHHHHHHcCCCCCCHHHHHHHHHHHcC----------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 047890 465 TLPRVASMHSAGFSSPTPIQAQTWPIALQG----------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534 (1134)
Q Consensus 465 ~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g----------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLV 534 (1134)
.+|.+..+ ++|||++++.+++++ ..||++..+|+|||+.++..+|.+|++.+.......++||
T Consensus 231 ~dP~l~~~-------LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lV 303 (776)
T KOG0390|consen 231 IDPLLKKI-------LRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLV 303 (776)
T ss_pred ecccHhhh-------cCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEE
Confidence 55666655 999999999999865 3599999999999999999999999998876666689999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCCceEEecCCCCC-chhHHhh------cCCCcEEEeChHHHHHHHHhcccCCCCeEEE
Q 047890 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPK-GPQLREL------DQGADIVVATPGRLNDILEMKKIDFGQVSLL 607 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~-~~~l~~l------~~~~dIIVaTPerL~~lL~~~~l~l~~l~lV 607 (1134)
|||. .|+..|++||.+|.....+....+++.... ......+ .-..-|+|.+++.+.++.. .+.+..+++|
T Consensus 304 V~P~-sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glL 380 (776)
T KOG0390|consen 304 VAPS-SLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLL 380 (776)
T ss_pred EccH-HHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeE
Confidence 9995 999999999999988767888788777653 1111111 1124688888888876554 4456688999
Q ss_pred EEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCc-hh---------------------------------------
Q 047890 608 VLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP-KD--------------------------------------- 647 (1134)
Q Consensus 608 VIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~-~~--------------------------------------- 647 (1134)
||||.|++.+. ...+.+.|..+...+ .|+||+|+- .+
T Consensus 381 VcDEGHrlkN~--~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 381 VCDEGHRLKNS--DSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred EECCCCCccch--hhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 99999998874 456677777775554 789999921 00
Q ss_pred ------------HHHHHHhhccCCe------------eeeec--------------------------cchhhhccccee
Q 047890 648 ------------VRKIASDLLVNPV------------QVNIG--------------------------NVDELAANKAIT 677 (1134)
Q Consensus 648 ------------v~~l~~~~l~~~~------------~i~i~--------------------------~~d~l~~~~~i~ 677 (1134)
+.++...++.... .+.+. ....+...+.++
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 1111111111000 00000 000000111122
Q ss_pred eEEEecc-------------------------------hhHHHHHHHHHHHHHh--cCCEEEEEeCcHHHHHHHHHHhc-
Q 047890 678 QHVEVVP-------------------------------QMEKERRLQQILRAQE--RGSRVIIFCSTKRLCDQLARSIG- 723 (1134)
Q Consensus 678 ~~~~~v~-------------------------------~~ek~~~L~~llk~~~--~~~kvLVF~nT~~~ae~La~~L~- 723 (1134)
.|..++. ...+...|..++.... ...+++++.|.+...+.+...++
T Consensus 538 nhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 538 NHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred cCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh
Confidence 2221111 0112233444442221 12345555566665555555442
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHhcCCC---CeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcce
Q 047890 724 RNFGAIAIHGDKSQGERDWVLNQFRSGKS---PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGV 800 (1134)
Q Consensus 724 ~~~~v~~LhG~ms~~eR~~il~~FrsGe~---~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~ 800 (1134)
+++.++.|||.++.++|+++++.|++... -+|++|.+.++||++.+++.||+||++||++...|+|+|++|+|++..
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~ 697 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKP 697 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcce
Confidence 27889999999999999999999997544 367888999999999999999999999999999999999999999999
Q ss_pred eEEEecc
Q 047890 801 AHTFFSE 807 (1134)
Q Consensus 801 ~ii~~~~ 807 (1134)
|++|-.-
T Consensus 698 v~iYrLl 704 (776)
T KOG0390|consen 698 VYIYRLL 704 (776)
T ss_pred EEEEEee
Confidence 9998643
No 91
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=4.2e-25 Score=283.83 Aligned_cols=309 Identities=17% Similarity=0.250 Sum_probs=198.9
Q ss_pred CCCCHHHHHHHHHHHc-----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 478 SSPTPIQAQTWPIALQ-----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~-----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
..|+++|.+||..+.+ .+.+||+++||||||++++..+..+++. ....+|||||++++|+.|+.++|+.+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHhc
Confidence 3599999999988763 3679999999999999876665555442 13458999999999999999999987
Q ss_pred ccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc-----ccCCCCeEEEEEcchhhhhcc---------
Q 047890 553 GRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK-----KIDFGQVSLLVLDEADRMLDM--------- 618 (1134)
Q Consensus 553 ~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~-----~l~l~~l~lVVIDEAHrll~~--------- 618 (1134)
..........+++...... ........|+|+|..+|...+... .+.+..+++|||||||+....
T Consensus 487 ~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 4332211111111100000 011234789999999987764321 245678999999999995310
Q ss_pred ------CchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHh--------------hccC---Ceeeeec---------c
Q 047890 619 ------GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASD--------------LLVN---PVQVNIG---------N 666 (1134)
Q Consensus 619 ------gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~--------------~l~~---~~~i~i~---------~ 666 (1134)
.+...+..++..+. ..+|+||||+.....++... ++.+ +..+... .
T Consensus 565 ~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~ 642 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEK 642 (1123)
T ss_pred ccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccc
Confidence 12356777887653 35899999975433322211 1211 1111110 0
Q ss_pred chhhhcccceeeEE--Eecch--------hHH--------HHHHHHHHHHHh--cCCEEEEEeCcHHHHHHHHHHhcCC-
Q 047890 667 VDELAANKAITQHV--EVVPQ--------MEK--------ERRLQQILRAQE--RGSRVIIFCSTKRLCDQLARSIGRN- 725 (1134)
Q Consensus 667 ~d~l~~~~~i~~~~--~~v~~--------~ek--------~~~L~~llk~~~--~~~kvLVF~nT~~~ae~La~~L~~~- 725 (1134)
.++..........+ ....+ .++ ..++..+++.+. ...|+||||.++++|+.+++.|.+.
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 00000000000000 00000 000 011222332221 2369999999999999988876431
Q ss_pred ---------CcEEEecCCCChhHHHHHHHHHhcCCC-CeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcC
Q 047890 726 ---------FGAIAIHGDKSQGERDWVLNQFRSGKS-PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRA 795 (1134)
Q Consensus 726 ---------~~v~~LhG~ms~~eR~~il~~FrsGe~-~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~ 795 (1134)
..+..++++.+ ++..++++|++++. .|||+++++.+|+|+|.|.+||+++++.|...|+|++||+.|.
T Consensus 723 ~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 723 KKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred HhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 13567888875 56789999999887 5899999999999999999999999999999999999999996
Q ss_pred CC
Q 047890 796 GA 797 (1134)
Q Consensus 796 Gq 797 (1134)
-.
T Consensus 801 ~~ 802 (1123)
T PRK11448 801 CP 802 (1123)
T ss_pred Cc
Confidence 43
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=4e-24 Score=263.28 Aligned_cols=315 Identities=18% Similarity=0.205 Sum_probs=222.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.++++|.-+--.+.. .-|+.++||+|||++|++|++..+. .+..|+||+||++||.|.++++..+....++
T Consensus 82 ~~ydvQliGg~~Lh~--G~Iaem~TGeGKTL~a~Lpa~~~al-------~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 82 RHFDVQLIGGMVLHE--GNIAEMRTGEGKTLVATLPAYLNAI-------SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred CcchHHHhhhhhhcc--CccccccCCCCchHHHHHHHHHHHh-------cCCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 367777766555444 4599999999999999999986554 3457999999999999999999999999999
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhc-ccCC-----CCeEEEEEcchhhhhccC------------
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMK-KIDF-----GQVSLLVLDEADRMLDMG------------ 619 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~-~l~l-----~~l~lVVIDEAHrll~~g------------ 619 (1134)
.+.+++++.........+ .++|+|+||++| +++|..+ .+.+ ..+.++||||||.|+-..
T Consensus 153 tv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred eEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 999999997766554444 589999999999 9999766 3444 589999999999864100
Q ss_pred ----chHHHHHHHHhCCC--------------Cc----------------------------------------------
Q 047890 620 ----FEPQIRKIVNEMPP--------------HR---------------------------------------------- 635 (1134)
Q Consensus 620 ----f~~~i~~IL~~l~~--------------~~---------------------------------------------- 635 (1134)
+...+..++..+.. ..
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~ 310 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALK 310 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHH
Confidence 00000111110000 00
Q ss_pred ----------------------------------------------------------------------eEEEEeccCc
Q 047890 636 ----------------------------------------------------------------------QTLMYTATWP 645 (1134)
Q Consensus 636 ----------------------------------------------------------------------qiLllSATl~ 645 (1134)
++.+||+|..
T Consensus 311 A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~ 390 (896)
T PRK13104 311 AHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTAD 390 (896)
T ss_pred HHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCCh
Confidence 1233333333
Q ss_pred hhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHH-HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC
Q 047890 646 KDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERR-LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR 724 (1134)
Q Consensus 646 ~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~-L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~ 724 (1134)
.+..++..-|-.+.+. |...... ..+... ........+|... +.++.+....+.+|||||+|++.++.|++.|.+
T Consensus 391 te~~Ef~~iY~l~Vv~--IPtnkp~-~R~d~~-d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 391 TEAYEFQQIYNLEVVV--IPTNRSM-IRKDEA-DLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hHHHHHHHHhCCCEEE--CCCCCCc-ceecCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 2222222222211111 1100000 001111 1222334445444 445555567889999999999999999999954
Q ss_pred -CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcc---------------------------------
Q 047890 725 -NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI--------------------------------- 770 (1134)
Q Consensus 725 -~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v--------------------------------- 770 (1134)
++.+.+||+.+...+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 789999999999999999999999995 99999999999999521
Q ss_pred -----eEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 771 -----RVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 771 -----~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
-+||-...+.|..-..|..||+||-|.+|.+..|++-+|.
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 2588888899999999999999999999999999987764
No 93
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=263.42 Aligned_cols=332 Identities=21% Similarity=0.287 Sum_probs=236.9
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCC----CCCCCEEEEEcccHHHHHH
Q 047890 470 ASMHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNN----PRNGPTVLVLAPTRELATQ 544 (1134)
Q Consensus 470 ~~l~~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~----~~~g~kvLVLvPTreLa~Q 544 (1134)
..-.-.|...+..+|..+...++.+ .++|+|||||+|||.++++.|+..+...... .-...++++|+|.++|+..
T Consensus 300 nq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE 379 (1674)
T KOG0951|consen 300 NQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQE 379 (1674)
T ss_pred hhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHH
Confidence 3334457778999999999999987 6899999999999999999988877643321 1234589999999999999
Q ss_pred HHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc-c-cCCCCeEEEEEcchhhhhccCchH
Q 047890 545 IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK-K-IDFGQVSLLVLDEADRMLDMGFEP 622 (1134)
Q Consensus 545 ~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~-~-l~l~~l~lVVIDEAHrll~~gf~~ 622 (1134)
|...|.+.+...+|.|.-++|+....... ..+..|||+||+.+.-+-++. . ....-++++||||.|.+ .....+
T Consensus 380 ~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL-hDdRGp 455 (1674)
T KOG0951|consen 380 MVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL-HDDRGP 455 (1674)
T ss_pred HHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc-ccccch
Confidence 99999999999999999999986543221 234789999999984433321 1 12335789999999955 334556
Q ss_pred HHHHHHHhC-------CCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHH-------
Q 047890 623 QIRKIVNEM-------PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEK------- 688 (1134)
Q Consensus 623 ~i~~IL~~l-------~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek------- 688 (1134)
.+..|+... ...+.++++|||+|. ..+++..+..++.- +...+..-....+.+.+.-+.+...
T Consensus 456 vLESIVaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~g--lf~fd~syRpvPL~qq~Igi~ek~~~~~~qam 532 (1674)
T KOG0951|consen 456 VLESIVARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEG--LFYFDSSYRPVPLKQQYIGITEKKPLKRFQAM 532 (1674)
T ss_pred HHHHHHHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCccc--ccccCcccCcCCccceEeccccCCchHHHHHH
Confidence 665554432 346789999999974 44555444444321 1122222333344455444433322
Q ss_pred -HHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhc--------------C------------------------CCcEE
Q 047890 689 -ERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIG--------------R------------------------NFGAI 729 (1134)
Q Consensus 689 -~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~--------------~------------------------~~~v~ 729 (1134)
+.+.+.+++.... .+||||+.+++++.+.++.++ + -+++.
T Consensus 533 Ne~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfa 611 (1674)
T KOG0951|consen 533 NEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFA 611 (1674)
T ss_pred HHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccce
Confidence 2345556665555 799999999887766665553 1 14678
Q ss_pred EecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe----ecCC------CChhhHHHhhhccCcCC--C
Q 047890 730 AIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN----YDFP------NGVEDYVHRIGRTGRAG--A 797 (1134)
Q Consensus 730 ~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~----~d~P------~s~~~yiQRiGRagR~G--q 797 (1134)
++|++|+..+|..+.+.|.+|+++|||+|..+++|+|+|.-+++|- ||+- .++.+.+|++||+||-+ .
T Consensus 612 IHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~ 691 (1674)
T KOG0951|consen 612 IHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDT 691 (1674)
T ss_pred eeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCc
Confidence 8999999999999999999999999999999999999998888773 5543 36889999999999965 4
Q ss_pred cceeEEEecccc
Q 047890 798 TGVAHTFFSEQD 809 (1134)
Q Consensus 798 kG~~ii~~~~~d 809 (1134)
.|..+++....+
T Consensus 692 ~gegiiit~~se 703 (1674)
T KOG0951|consen 692 CGEGIIITDHSE 703 (1674)
T ss_pred CCceeeccCchH
Confidence 455555554443
No 94
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=5.4e-24 Score=250.47 Aligned_cols=330 Identities=21% Similarity=0.258 Sum_probs=231.4
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWPIALQ----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.++++|.+.++++.. +-++|+.++||.|||+..+.. +.+|+..... ....|||||. +...+|.++|++|..
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~-l~yl~~~~~~---~GPfLVi~P~-StL~NW~~Ef~rf~P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISL-LGYLKGRKGI---PGPFLVIAPK-STLDNWMNEFKRFTP 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHH-HHHHHHhcCC---CCCeEEEeeH-hhHHHHHHHHHHhCC
Confidence 599999999999874 578999999999999986653 4455543332 2357999996 556789999999976
Q ss_pred CCCCceEEecCCCCCchhHH-hh--cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhC
Q 047890 555 SSRLSCTCLYGGAPKGPQLR-EL--DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM 631 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~-~l--~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l 631 (1134)
. +++++++|+......+. .+ ....+|+|+|++..+.- ...+.--.+.+|||||||+|.+.. ..+.+++..+
T Consensus 242 ~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f 315 (971)
T KOG0385|consen 242 S--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREF 315 (971)
T ss_pred C--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHHHh
Confidence 4 78888888864433322 22 23589999999988764 333444478999999999998864 4455777776
Q ss_pred CCCceEEEEeccCch-hHHH------------------HHHh----------------------hcc-------------
Q 047890 632 PPHRQTLMYTATWPK-DVRK------------------IASD----------------------LLV------------- 657 (1134)
Q Consensus 632 ~~~~qiLllSATl~~-~v~~------------------l~~~----------------------~l~------------- 657 (1134)
.... .|++|+|.-. .+.+ +..+ ++.
T Consensus 316 ~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred cccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 5544 7899999210 0000 0000 000
Q ss_pred -CCeeeeeccc---------------hhh---------------hcccceeeEEEe----------------cchhHHHH
Q 047890 658 -NPVQVNIGNV---------------DEL---------------AANKAITQHVEV----------------VPQMEKER 690 (1134)
Q Consensus 658 -~~~~i~i~~~---------------d~l---------------~~~~~i~~~~~~----------------v~~~ek~~ 690 (1134)
..+.+.+... +.+ ....+.|.|..+ +...-|..
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~ 474 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKML 474 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCccee
Confidence 0000111000 000 000111222111 11122445
Q ss_pred HHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHh-cCCCcEEEecCCCChhHHHHHHHHHhcC---CCCeeeecccceecc
Q 047890 691 RLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRSG---KSPILVATDVAARGL 765 (1134)
Q Consensus 691 ~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L-~~~~~v~~LhG~ms~~eR~~il~~FrsG---e~~VLVATdvl~~GL 765 (1134)
+|..+|..+ ..+.+||||..-...++.|..++ -++|.++.|+|.++-++|...|+.|+.. .+-+|++|-+.+.||
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 566666655 45789999999999999998887 4689999999999999999999999864 455789999999999
Q ss_pred ccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHH
Q 047890 766 DIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVL 820 (1134)
Q Consensus 766 DIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L 820 (1134)
|+..+++||.||..|++...+|++.||.|.|++..+++|-.-.+..+.+.|++..
T Consensus 555 NL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA 609 (971)
T KOG0385|consen 555 NLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERA 609 (971)
T ss_pred ccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHH
Confidence 9999999999999999999999999999999999888876666655555555443
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=4e-23 Score=254.45 Aligned_cols=316 Identities=19% Similarity=0.186 Sum_probs=227.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|++.|.-+.-.+..| .|+.+.||+|||+++.+|++.... .+..|.||+||..||.|.++++..+....++
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL-------~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNAL-------TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 4788888887666555 499999999999999999863322 2446889999999999999999999999999
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhcc------cCCCCeEEEEEcchhhhhccC------------
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMKK------IDFGQVSLLVLDEADRMLDMG------------ 619 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~~------l~l~~l~lVVIDEAHrll~~g------------ 619 (1134)
.+.+++++.........+ .++|+|+|+..| +++|..+. ..+..+.++||||||.|+=..
T Consensus 152 sv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~ 229 (830)
T PRK12904 152 SVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAE 229 (830)
T ss_pred eEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCC
Confidence 999999988776655554 489999999999 99987554 246789999999999864100
Q ss_pred ----chHHHHHHHHhCC--------------------------------------------------------CC-----
Q 047890 620 ----FEPQIRKIVNEMP--------------------------------------------------------PH----- 634 (1134)
Q Consensus 620 ----f~~~i~~IL~~l~--------------------------------------------------------~~----- 634 (1134)
+...+..++..+. .+
T Consensus 230 ~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 309 (830)
T PRK12904 230 DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV 309 (830)
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 0000011111100 00
Q ss_pred --------------------------------------------------------ceEEEEeccCchhHHHHHHhhccC
Q 047890 635 --------------------------------------------------------RQTLMYTATWPKDVRKIASDLLVN 658 (1134)
Q Consensus 635 --------------------------------------------------------~qiLllSATl~~~v~~l~~~~l~~ 658 (1134)
..+.+||+|...+..++...|-.+
T Consensus 310 ~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~ 389 (830)
T PRK12904 310 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLD 389 (830)
T ss_pred ECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCC
Confidence 124555555544444433333222
Q ss_pred CeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHH-HhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCC
Q 047890 659 PVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRA-QERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKS 736 (1134)
Q Consensus 659 ~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~-~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms 736 (1134)
.+.|.. .... ..... .........+|...+...+.. ...+.+|||||+|++.++.|++.|.+ ++.+..||+.
T Consensus 390 vv~IPt--nkp~-~r~d~-~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 390 VVVIPT--NRPM-IRIDH-PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred EEEcCC--CCCe-eeeeC-CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 221111 0000 00001 112233455566666655544 45678999999999999999999964 6899999995
Q ss_pred hhHHHHHHHHHhcCCCCeeeecccceeccccCcc--------------------------------------eEEEeecC
Q 047890 737 QGERDWVLNQFRSGKSPILVATDVAARGLDIKDI--------------------------------------RVVINYDF 778 (1134)
Q Consensus 737 ~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v--------------------------------------~~VI~~d~ 778 (1134)
+.+|+..+..|+.+...|+|||++++||+||.-- -+||....
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 7799999999999999999999999999999542 25888889
Q ss_pred CCChhhHHHhhhccCcCCCcceeEEEecccchH
Q 047890 779 PNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSK 811 (1134)
Q Consensus 779 P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~ 811 (1134)
+.|..-..|..||+||-|.+|.+..|++-+|.-
T Consensus 544 hesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred CchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 999999999999999999999999999887643
No 96
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=1.8e-23 Score=250.06 Aligned_cols=310 Identities=20% Similarity=0.236 Sum_probs=226.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
+|-.+|++||-++..|..+++.|.|.+|||+++-.++...-+ ...++||.+|-++|.+|-++.|+.-+.+.+
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~-------h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg- 368 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK-------HMTRTIYTSPIKALSNQKFRDFKETFGDVG- 368 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh-------hccceEecchhhhhccchHHHHHHhccccc-
Confidence 489999999999999999999999999999998765543322 456899999999999999999987655533
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEE
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTL 638 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiL 638 (1134)
+++|+... ...+.++|+|.+.|.++|....--++++++|||||+|.+.|......+++++-.++.+.++|
T Consensus 369 ---LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~I 438 (1248)
T KOG0947|consen 369 ---LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFI 438 (1248)
T ss_pred ---eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEE
Confidence 66776543 34478999999999999998888889999999999999999988899999999999999999
Q ss_pred EEeccCchhHHHHHHhhc---cCCeeeeeccch-------------hhh---------cccceee----------EEEe-
Q 047890 639 MYTATWPKDVRKIASDLL---VNPVQVNIGNVD-------------ELA---------ANKAITQ----------HVEV- 682 (1134)
Q Consensus 639 llSATl~~~v~~l~~~~l---~~~~~i~i~~~d-------------~l~---------~~~~i~~----------~~~~- 682 (1134)
+||||.|...+ ++.+.- .+.+.+ ++... ++. ....+.. .+..
T Consensus 439 lLSATVPN~~E-FA~WIGRtK~K~IyV-iST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 439 LLSATVPNTLE-FADWIGRTKQKTIYV-ISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred EEeccCCChHH-HHHHhhhccCceEEE-EecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 99999976543 443321 111111 10000 000 0000000 0000
Q ss_pred ---------------------------cchhHHH--HHHHHHHHHHhc--CCEEEEEeCcHHHHHHHHHHhcC-C-----
Q 047890 683 ---------------------------VPQMEKE--RRLQQILRAQER--GSRVIIFCSTKRLCDQLARSIGR-N----- 725 (1134)
Q Consensus 683 ---------------------------v~~~ek~--~~L~~llk~~~~--~~kvLVF~nT~~~ae~La~~L~~-~----- 725 (1134)
....++. ..+..++..+.. --.+||||-+++.||+.+..|.. +
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~ 596 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSK 596 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccch
Confidence 0000000 123344443332 24799999999999998888732 0
Q ss_pred ----------------------------------CcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcce
Q 047890 726 ----------------------------------FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771 (1134)
Q Consensus 726 ----------------------------------~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~ 771 (1134)
-++.++|+++-.--++-|...|..|-++||+||..+++|||.|.-.
T Consensus 597 EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARt 676 (1248)
T KOG0947|consen 597 EKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPART 676 (1248)
T ss_pred hHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCcee
Confidence 1467889999999999999999999999999999999999999766
Q ss_pred EEEee----c----CCCChhhHHHhhhccCcCC--CcceeEEEeccc
Q 047890 772 VVINY----D----FPNGVEDYVHRIGRTGRAG--ATGVAHTFFSEQ 808 (1134)
Q Consensus 772 ~VI~~----d----~P~s~~~yiQRiGRagR~G--qkG~~ii~~~~~ 808 (1134)
+|+.- | .--.+-+|.|+.|||||.| ..|+++++....
T Consensus 677 vVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 677 VVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 66631 1 1125789999999999988 578887776543
No 97
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.1e-23 Score=246.96 Aligned_cols=317 Identities=16% Similarity=0.215 Sum_probs=215.9
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWPIALQ----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.|.+||+++|.++++ +...||.++||.|||+..+.- |..|.... .-...+|||||. .|+.||.+||..|..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisF-LaaL~~S~---k~~~paLIVCP~-Tii~qW~~E~~~w~p 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISF-LAALHHSG---KLTKPALIVCPA-TIIHQWMKEFQTWWP 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHH-HHHHhhcc---cccCceEEEccH-HHHHHHHHHHHHhCc
Confidence 478999999999984 467899999999999874322 22222110 122579999996 899999999999987
Q ss_pred CCCCceEEecCCCCC------------chhHH-hhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCch
Q 047890 555 SSRLSCTCLYGGAPK------------GPQLR-ELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFE 621 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~------------~~~l~-~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~ 621 (1134)
. +.+.++++.... +..+. .......|+|+|++.|.- ....+.-..++++|+||.|+|.+..
T Consensus 280 ~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpn-- 353 (923)
T KOG0387|consen 280 P--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPN-- 353 (923)
T ss_pred c--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCc--
Confidence 6 455555553321 11111 112345799999877643 2334455578999999999988754
Q ss_pred HHHHHHHHhCCCCceEEEEeccCc-hhHH---------------------------------------------------
Q 047890 622 PQIRKIVNEMPPHRQTLMYTATWP-KDVR--------------------------------------------------- 649 (1134)
Q Consensus 622 ~~i~~IL~~l~~~~qiLllSATl~-~~v~--------------------------------------------------- 649 (1134)
..+...+..+.. .+.|+||+|.- ..+.
T Consensus 354 s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387|consen 354 SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHH
Confidence 334444444433 34677888821 0000
Q ss_pred -HHHHhhc-------------c-CCeee---eec-------------------------cchhhhcccceeeEEEecch-
Q 047890 650 -KIASDLL-------------V-NPVQV---NIG-------------------------NVDELAANKAITQHVEVVPQ- 685 (1134)
Q Consensus 650 -~l~~~~l-------------~-~~~~i---~i~-------------------------~~d~l~~~~~i~~~~~~v~~- 685 (1134)
+++..|+ . +...| .+. ....+....++|.|..+...
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCc
Confidence 1111110 0 00000 000 00011122334444433322
Q ss_pred ----------------hHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhc--CCCcEEEecCCCChhHHHHHHHH
Q 047890 686 ----------------MEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIG--RNFGAIAIHGDKSQGERDWVLNQ 746 (1134)
Q Consensus 686 ----------------~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~--~~~~v~~LhG~ms~~eR~~il~~ 746 (1134)
..|...+..+++.. ..+.++|+|..++..++.|...|. .+|.++.+.|..+...|..++++
T Consensus 513 ~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~ 592 (923)
T KOG0387|consen 513 DEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDR 592 (923)
T ss_pred ccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHh
Confidence 22456666666654 357799999999999999999997 48999999999999999999999
Q ss_pred HhcCCCC--eeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecc
Q 047890 747 FRSGKSP--ILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSE 807 (1134)
Q Consensus 747 FrsGe~~--VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~ 807 (1134)
|++++.. +|++|.|.+-|||+..++.||.||+.|++....|+.-|++|.|++..++||-.-
T Consensus 593 Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~ 655 (923)
T KOG0387|consen 593 FNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLM 655 (923)
T ss_pred hcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEe
Confidence 9987653 689999999999999999999999999999999999999999999888777543
No 98
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=7.2e-23 Score=251.64 Aligned_cols=145 Identities=20% Similarity=0.259 Sum_probs=123.4
Q ss_pred ccchhHHHHHH-----HcCCCCC---CHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 047890 463 SATLPRVASMH-----SAGFSSP---TPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534 (1134)
Q Consensus 463 ~v~~~~l~~l~-----~~Gf~~p---rpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLV 534 (1134)
.+..++...+. ..||..| ||+|.++++.++.++++|+.++||+|||++|++|++..+.. +..++|
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-------g~~v~I 140 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-------GKPVHL 140 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-------cCCeEE
Confidence 34444455544 5789988 99999999999999999999999999999999999976542 224899
Q ss_pred EcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhcccCCC-------CeEE
Q 047890 535 LAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMKKIDFG-------QVSL 606 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~~l~l~-------~l~l 606 (1134)
|+||++||.|+.+++..+....++.+.+++||.........+ .++|||+||++| ++++..+.+.++ .+.+
T Consensus 141 VTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~ 218 (970)
T PRK12899 141 VTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYF 218 (970)
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccE
Confidence 999999999999999999988899999999999887776555 499999999999 999987766655 4589
Q ss_pred EEEcchhhhh
Q 047890 607 LVLDEADRML 616 (1134)
Q Consensus 607 VVIDEAHrll 616 (1134)
+||||||.|+
T Consensus 219 ~IIDEADsmL 228 (970)
T PRK12899 219 AIIDEVDSIL 228 (970)
T ss_pred EEEechhhhh
Confidence 9999999876
No 99
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.8e-23 Score=253.69 Aligned_cols=315 Identities=19% Similarity=0.231 Sum_probs=219.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|++.|.-+.-.+..|+ |+...||+|||+++.++++.... .+..|.|++||.-||.+-++.+..+...+++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al-------~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL-------TGKGVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH-------cCCCeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 58899988876666655 99999999999999988877655 5778999999999999999999999999999
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhc------ccCCCCeEEEEEcchhhhhccC------------
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMK------KIDFGQVSLLVLDEADRMLDMG------------ 619 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~------~l~l~~l~lVVIDEAHrll~~g------------ 619 (1134)
.|.++.++......... -.|+|+++|...| +++|..+ ......+.+.||||+|.++=..
T Consensus 151 ~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~ 228 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAE 228 (796)
T ss_pred eEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCC
Confidence 99999887655544333 3589999998766 4444432 1224568899999999753100
Q ss_pred ----chHHHHHHHHhCC---------------------------------------------------------------
Q 047890 620 ----FEPQIRKIVNEMP--------------------------------------------------------------- 632 (1134)
Q Consensus 620 ----f~~~i~~IL~~l~--------------------------------------------------------------- 632 (1134)
+...+..++..+.
T Consensus 229 ~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 308 (796)
T PRK12906 229 KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRAN 308 (796)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHH
Confidence 0000000000000
Q ss_pred ----CC-------------------------------------------------------------ceEEEEeccCchh
Q 047890 633 ----PH-------------------------------------------------------------RQTLMYTATWPKD 647 (1134)
Q Consensus 633 ----~~-------------------------------------------------------------~qiLllSATl~~~ 647 (1134)
.+ ..+.+||+|...+
T Consensus 309 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e 388 (796)
T PRK12906 309 YIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTE 388 (796)
T ss_pred HHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 00 0123344443332
Q ss_pred HHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHH-HHhcCCEEEEEeCcHHHHHHHHHHhcC-C
Q 047890 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILR-AQERGSRVIIFCSTKRLCDQLARSIGR-N 725 (1134)
Q Consensus 648 v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk-~~~~~~kvLVF~nT~~~ae~La~~L~~-~ 725 (1134)
..++.+.+-.+.+ .+...... ... ...........+|...|...+. ....+.++||||+|++.++.|++.|.+ +
T Consensus 389 ~~Ef~~iY~l~vv--~IPtnkp~-~r~-d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 389 EEEFREIYNMEVI--TIPTNRPV-IRK-DSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHhCCCEE--EcCCCCCe-eee-eCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 2222222211111 11100000 000 0011122334456555555553 445788999999999999999999964 7
Q ss_pred CcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccC---cce-----EEEeecCCCChhhHHHhhhccCcCCC
Q 047890 726 FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK---DIR-----VVINYDFPNGVEDYVHRIGRTGRAGA 797 (1134)
Q Consensus 726 ~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp---~v~-----~VI~~d~P~s~~~yiQRiGRagR~Gq 797 (1134)
+.+.+||+++...++..+...++.|. |+|||++++||+||. +|. +||+++.|.+.+.|.|++||+||.|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 89999999999888777777777766 999999999999994 888 99999999999999999999999999
Q ss_pred cceeEEEecccch
Q 047890 798 TGVAHTFFSEQDS 810 (1134)
Q Consensus 798 kG~~ii~~~~~d~ 810 (1134)
+|.+.+|++.+|.
T Consensus 543 ~G~s~~~~sleD~ 555 (796)
T PRK12906 543 PGSSRFYLSLEDD 555 (796)
T ss_pred CcceEEEEeccch
Confidence 9999999988764
No 100
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=2.8e-23 Score=243.35 Aligned_cols=308 Identities=20% Similarity=0.261 Sum_probs=231.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
+|-|+|..||..+..+..+|+.|-|.+|||+++-.+|...|+ .+-+|||.+|-++|.+|-|++|..-+.+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-------~kQRVIYTSPIKALSNQKYREl~~EF~D--- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-------EKQRVIYTSPIKALSNQKYRELLEEFKD--- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH-------hcCeEEeeChhhhhcchhHHHHHHHhcc---
Confidence 478999999999999999999999999999999888887776 4569999999999999999998765444
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEE
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTL 638 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiL 638 (1134)
+.+.+|+.... ..+.-+|.|.+.|.++|.++..-+..+.+|||||+|.|.|......|.+.+-.++++...+
T Consensus 199 -VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 -VGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred -cceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 44556665432 3466899999999999999888889999999999999999988888888888899999999
Q ss_pred EEeccCchhHH--HHHHhhccCCeeeeeccchhhhcccceeeE---------EEecchhHH--H----------------
Q 047890 639 MYTATWPKDVR--KIASDLLVNPVQVNIGNVDELAANKAITQH---------VEVVPQMEK--E---------------- 689 (1134)
Q Consensus 639 llSATl~~~v~--~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~---------~~~v~~~ek--~---------------- 689 (1134)
+||||+|...+ +++..+...++.+...+.... .+.++ +.+++++.+ .
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPT----PLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~ 346 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYTDYRPT----PLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES 346 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEeecCCCC----cceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC
Confidence 99999985432 333333444544433221110 01111 111111100 0
Q ss_pred ----------------------HHHHHHHHHH--hcCCEEEEEeCcHHHHHHHHHHhcC-C-------------------
Q 047890 690 ----------------------RRLQQILRAQ--ERGSRVIIFCSTKRLCDQLARSIGR-N------------------- 725 (1134)
Q Consensus 690 ----------------------~~L~~llk~~--~~~~kvLVF~nT~~~ae~La~~L~~-~------------------- 725 (1134)
..+..+++.+ .....||||+-++++|+.++..+.+ +
T Consensus 347 ~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~ 426 (1041)
T KOG0948|consen 347 DGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAID 426 (1041)
T ss_pred ccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHH
Confidence 0122222221 2345799999999999999877643 0
Q ss_pred --------------------CcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe----ecCC--
Q 047890 726 --------------------FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN----YDFP-- 779 (1134)
Q Consensus 726 --------------------~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~----~d~P-- 779 (1134)
-++.++|+++-.--++-|.-.|.+|-++||+||..++.|||.|.-++|+- ||--
T Consensus 427 ~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~f 506 (1041)
T KOG0948|consen 427 QLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKF 506 (1041)
T ss_pred hcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcce
Confidence 14667899999988888888999999999999999999999997766664 3311
Q ss_pred --CChhhHHHhhhccCcCC--CcceeEEEeccc
Q 047890 780 --NGVEDYVHRIGRTGRAG--ATGVAHTFFSEQ 808 (1134)
Q Consensus 780 --~s~~~yiQRiGRagR~G--qkG~~ii~~~~~ 808 (1134)
-+.-+|+|+.||+||.| ..|.|++++++.
T Consensus 507 RwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 507 RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeecccceEEecccccccCCCCCceEEEEecCc
Confidence 15678999999999988 478999998865
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.7e-21 Score=213.19 Aligned_cols=314 Identities=21% Similarity=0.214 Sum_probs=208.4
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWPIAL----QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~il----~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+|++.|+.+-..++ +..+.|++|-||+|||....-.+-..++ .+.+|.|.+|....+..++..|+.-+.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~-------~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN-------QGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh-------cCCeEEEecCcccchHHHHHHHHHhhc
Confidence 58999998866655 4689999999999999874443333443 677999999999999999999987654
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCC
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH 634 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~ 634 (1134)
. ..+.+++|++...- . ..+||+|...|+.+-. .+++|||||+|..-...-......+-+.....
T Consensus 170 ~--~~I~~Lyg~S~~~f------r-~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 170 N--CDIDLLYGDSDSYF------R-APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred c--CCeeeEecCCchhc------c-ccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 3 56778888764321 1 5799999888877653 57899999999754322122222333344455
Q ss_pred ceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHH------HHHHHHHH-HHhcCCEEEE
Q 047890 635 RQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE------RRLQQILR-AQERGSRVII 707 (1134)
Q Consensus 635 ~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~------~~L~~llk-~~~~~~kvLV 707 (1134)
--+|+||||.+++++.-+..-- ...+.+..... .....+...+..-.-..+. ..|..+++ ..+.+..+||
T Consensus 234 g~~IylTATp~k~l~r~~~~g~--~~~~klp~RfH-~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGN--LRILKLPARFH-GKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred CceEEEecCChHHHHHHhhhCC--eeEeecchhhc-CCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 5699999998766553332211 11122211110 0111112222222222221 13444444 3456789999
Q ss_pred EeCcHHHHHHHHHHhcCCCc---EEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCC--CCh
Q 047890 708 FCSTKRLCDQLARSIGRNFG---AIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFP--NGV 782 (1134)
Q Consensus 708 F~nT~~~ae~La~~L~~~~~---v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P--~s~ 782 (1134)
|+++++..+.+++.|++.+. +..+|+. ...|.+.++.|++|+++|||+|.++++|+.+|+|+++|.-.-- .+.
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccH
Confidence 99999999999999976554 4566763 4578889999999999999999999999999999997754432 578
Q ss_pred hhHHHhhhccCcCCC--cceeEEEecccchHHHHHHHHHHH
Q 047890 783 EDYVHRIGRTGRAGA--TGVAHTFFSEQDSKYAADLVKVLE 821 (1134)
Q Consensus 783 ~~yiQRiGRagR~Gq--kG~~ii~~~~~d~~~~~~l~k~L~ 821 (1134)
+.++|..||+||.-. .|.+..| -....+...+..+.++
T Consensus 389 saLVQIaGRvGRs~~~PtGdv~FF-H~G~skaM~~A~keIk 428 (441)
T COG4098 389 SALVQIAGRVGRSLERPTGDVLFF-HYGKSKAMKQARKEIK 428 (441)
T ss_pred HHHHHHhhhccCCCcCCCCcEEEE-eccchHHHHHHHHHHH
Confidence 899999999999643 4555444 4444443333333333
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=1.1e-22 Score=254.97 Aligned_cols=326 Identities=19% Similarity=0.218 Sum_probs=219.2
Q ss_pred CCHHHHHHHHHHHcC---C-CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 480 PTPIQAQTWPIALQG---R-DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 480 prpiQ~eaI~~il~g---r-dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
.++.|.+++..++.. . .+++.||||+|||++++++++..+... .....++|++.|++++++++++.++++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~---~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK---IKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---ccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 489999999998864 4 788999999999999999988876642 125679999999999999999999987655
Q ss_pred CCCceEEecCCCCCchhHHh---------hc-----CCCcEEEeChHHHHHHHH-hcccC---CCCeEEEEEcchhhhhc
Q 047890 556 SRLSCTCLYGGAPKGPQLRE---------LD-----QGADIVVATPGRLNDILE-MKKID---FGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 556 ~~i~v~~l~GG~~~~~~l~~---------l~-----~~~dIIVaTPerL~~lL~-~~~l~---l~~l~lVVIDEAHrll~ 617 (1134)
..+....+++.......... +. .-..++++|+..+..... ...+. .-..++|||||+|.+.+
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 44433312332211111000 00 013455666555444211 11111 11347899999998877
Q ss_pred cCchHHHHHHHHhC-CCCceEEEEeccCchhHHHHHHhhccCCeeeeeccc-hhhhcccceeeEEEecchhHH--HHHHH
Q 047890 618 MGFEPQIRKIVNEM-PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNV-DELAANKAITQHVEVVPQMEK--ERRLQ 693 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l-~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~-d~l~~~~~i~~~~~~v~~~ek--~~~L~ 693 (1134)
......+..++..+ .....+|++|||+|...++.+...+.+...+..... ........+..... +...+. ...+.
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~ 431 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER-VDVEDGPQEELIE 431 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc-hhhhhhhhHhhhh
Confidence 63333444444433 235679999999999999988888766554433211 00001111111100 000011 13455
Q ss_pred HHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCCCc-EEEecCCCChhHHHHHHHHHh----cCCCCeeeecccceeccccC
Q 047890 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGRNFG-AIAIHGDKSQGERDWVLNQFR----SGKSPILVATDVAARGLDIK 768 (1134)
Q Consensus 694 ~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~~~-v~~LhG~ms~~eR~~il~~Fr----sGe~~VLVATdvl~~GLDIp 768 (1134)
.+.+....+++++|+|||+..|.++++.|+.... +..+|+.++..+|.+.++.++ .++..|+|||++++.||||.
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 5566677889999999999999999999987666 999999999999998887554 57889999999999999995
Q ss_pred cceEEEeecCCCChhhHHHhhhccCcCC--CcceeEEEecccchHH
Q 047890 769 DIRVVINYDFPNGVEDYVHRIGRTGRAG--ATGVAHTFFSEQDSKY 812 (1134)
Q Consensus 769 ~v~~VI~~d~P~s~~~yiQRiGRagR~G--qkG~~ii~~~~~d~~~ 812 (1134)
.+++|- -+..+++.+||+||++|.| ..+.++++........
T Consensus 512 -fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~ 554 (733)
T COG1203 512 -FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPY 554 (733)
T ss_pred -cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecccCCCc
Confidence 555553 2234899999999999999 5777877776554433
No 103
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.90 E-value=1.2e-22 Score=208.93 Aligned_cols=165 Identities=34% Similarity=0.549 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCce
Q 047890 481 TPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSC 560 (1134)
Q Consensus 481 rpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v 560 (1134)
||+|.++++.++.++++|+.++||+|||++++++++..+... ...++||++|+++|++|.++++.+++....+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-----~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-----KDARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-----SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-----CCceEEEEeeccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999877632 223999999999999999999999998878889
Q ss_pred EEecCCCCCc-hhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCC--CceE
Q 047890 561 TCLYGGAPKG-PQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPP--HRQT 637 (1134)
Q Consensus 561 ~~l~GG~~~~-~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~--~~qi 637 (1134)
..++++.... .....+..+++|+|+||+.|.+++......+.++++|||||+|.+..+.+...+..++..+.. +.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred ccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 9998887755 333444567999999999999999876667778999999999999998888888888887733 5889
Q ss_pred EEEeccCchhHHH
Q 047890 638 LMYTATWPKDVRK 650 (1134)
Q Consensus 638 LllSATl~~~v~~ 650 (1134)
|++|||++..+++
T Consensus 156 i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 156 ILLSATLPSNVEK 168 (169)
T ss_dssp EEEESSSTHHHHH
T ss_pred EEEeeCCChhHhh
Confidence 9999999866654
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=4.3e-22 Score=244.73 Aligned_cols=318 Identities=20% Similarity=0.233 Sum_probs=217.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|+++|.-+--.+. ..-|+.+.||.|||++|++|++..+. .+..|+||+|+..||.+..+++..+....++
T Consensus 82 ~~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al-------~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 82 RHFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNAL-------TGKGVHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred CcCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHh-------cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 36777766544443 45599999999999999999886554 4556999999999999999999999999999
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhc-ccCC-----CCeEEEEEcchhhhhccC------------
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMK-KIDF-----GQVSLLVLDEADRMLDMG------------ 619 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~-~l~l-----~~l~lVVIDEAHrll~~g------------ 619 (1134)
.|.++.++.+...... .-.++|+++|+..| +++|..+ .+.. ..+.++||||+|.++-..
T Consensus 153 sv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~ 230 (908)
T PRK13107 153 TVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAE 230 (908)
T ss_pred eEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCc
Confidence 9999998876543322 23689999999999 8988766 3333 678999999999875311
Q ss_pred ----chHHHHHHHHhCC-------------------CCceEEEEeccCchhHHHHH------------------------
Q 047890 620 ----FEPQIRKIVNEMP-------------------PHRQTLMYTATWPKDVRKIA------------------------ 652 (1134)
Q Consensus 620 ----f~~~i~~IL~~l~-------------------~~~qiLllSATl~~~v~~l~------------------------ 652 (1134)
+...+..++..+. .....+.||-.--..++.++
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i 310 (908)
T PRK13107 231 DSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHV 310 (908)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHH
Confidence 1111111111111 11122333321000111110
Q ss_pred ----Hh--hcc--------CCeeeeecc----------------------------------------------------
Q 047890 653 ----SD--LLV--------NPVQVNIGN---------------------------------------------------- 666 (1134)
Q Consensus 653 ----~~--~l~--------~~~~i~i~~---------------------------------------------------- 666 (1134)
+. ++. +...+.+..
T Consensus 311 ~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GM 390 (908)
T PRK13107 311 NAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGM 390 (908)
T ss_pred HHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcc
Confidence 00 000 000000000
Q ss_pred -------chhh-----------hcccc-----eeeEEEecchhHHHH-HHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHh
Q 047890 667 -------VDEL-----------AANKA-----ITQHVEVVPQMEKER-RLQQILRAQERGSRVIIFCSTKRLCDQLARSI 722 (1134)
Q Consensus 667 -------~d~l-----------~~~~~-----i~~~~~~v~~~ek~~-~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L 722 (1134)
..++ ..++. ....+ .....+|.. ++.++.+....+.+|||||+|++.++.|+..|
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~i-y~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L 469 (908)
T PRK13107 391 TGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLV-YLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLM 469 (908)
T ss_pred cCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcE-EeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHH
Confidence 0000 00000 00011 122233433 44555555678999999999999999999999
Q ss_pred cC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCc--------------------------------
Q 047890 723 GR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD-------------------------------- 769 (1134)
Q Consensus 723 ~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~-------------------------------- 769 (1134)
.+ ++.+.+||+.+...+++.+.+.|+.|. |+|||++++||+||.=
T Consensus 470 ~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (908)
T PRK13107 470 VKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDE 547 (908)
T ss_pred HHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHH
Confidence 54 788999999999999999999999998 9999999999999952
Q ss_pred -----ceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 770 -----IRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 770 -----v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
=-+||-...+.|..-..|..||+||-|.+|.+..|++-+|.
T Consensus 548 V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 548 VVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12688888999999999999999999999999999988775
No 105
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=6e-22 Score=246.51 Aligned_cols=315 Identities=21% Similarity=0.283 Sum_probs=225.8
Q ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 474 SAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 474 ~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
..+|. |-++|++|+-.|..+..|+++|+||+|||+++..++...++ .+.++++++|.++|.+|.+.+|....
T Consensus 115 ~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-------~~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 115 EYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-------DGQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred hCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-------cCCceEeccchhhhhhhHHHHHHHHh
Confidence 34564 89999999999999999999999999999998888777666 45679999999999999999987654
Q ss_pred cCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCC
Q 047890 554 RSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPP 633 (1134)
Q Consensus 554 ~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~ 633 (1134)
.+..--+.+++|+... ...+.++|.|.+.|.+++......+..+..|||||+|.|.+..-...++.++-.++.
T Consensus 187 gdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 187 GDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 4332234556666543 345789999999999999999888999999999999999999989999999999999
Q ss_pred CceEEEEeccCchhHHHHHHhh---ccCCeeeeeccchhhhcccce---eeEEEecchhHH---------HHHH------
Q 047890 634 HRQTLMYTATWPKDVRKIASDL---LVNPVQVNIGNVDELAANKAI---TQHVEVVPQMEK---------ERRL------ 692 (1134)
Q Consensus 634 ~~qiLllSATl~~~v~~l~~~~---l~~~~~i~i~~~d~l~~~~~i---~~~~~~v~~~ek---------~~~L------ 692 (1134)
+.++|+||||++.. .++..++ -..++.+...+.........+ ...+.++....+ ...+
T Consensus 260 ~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 260 HVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred CCcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 99999999998644 3333332 222322221111100000000 000001111000 0000
Q ss_pred -----------------------------HHHHHHH--hcCCEEEEEeCcHHHHHHHHHHhcC----------C------
Q 047890 693 -----------------------------QQILRAQ--ERGSRVIIFCSTKRLCDQLARSIGR----------N------ 725 (1134)
Q Consensus 693 -----------------------------~~llk~~--~~~~kvLVF~nT~~~ae~La~~L~~----------~------ 725 (1134)
..+++.+ ...-.+|+|+-+++.|+.++..+.. .
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii 418 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREII 418 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHH
Confidence 1111111 1234789999999999887766531 0
Q ss_pred -------------C-------------cEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEE----e
Q 047890 726 -------------F-------------GAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI----N 775 (1134)
Q Consensus 726 -------------~-------------~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI----~ 775 (1134)
+ .+.++|++|-...+..+.+.|..|.++||++|.+++.|||+|.-++|+ .
T Consensus 419 ~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K 498 (1041)
T COG4581 419 DHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSK 498 (1041)
T ss_pred HHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEE
Confidence 1 234679999999999999999999999999999999999999666554 2
Q ss_pred ec----CCCChhhHHHhhhccCcCCC--cceeEEE
Q 047890 776 YD----FPNGVEDYVHRIGRTGRAGA--TGVAHTF 804 (1134)
Q Consensus 776 ~d----~P~s~~~yiQRiGRagR~Gq--kG~~ii~ 804 (1134)
+| ..-+..+|+|..||+||.|- .|.++++
T Consensus 499 ~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 499 FDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred ecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 33 22368999999999999885 5666665
No 106
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.88 E-value=1.2e-21 Score=238.96 Aligned_cols=330 Identities=18% Similarity=0.256 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHHH--c--CCCEEEEccCCCchhHHHHHHHH-HHHHH-hcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 479 SPTPIQAQTWPIAL--Q--GRDIVAIAKTGSGKTLGYLIPAF-ILLRQ-LHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 479 ~prpiQ~eaI~~il--~--grdvLl~ApTGSGKTla~llpal-~~L~~-~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
.||.||.+.|+++. . +-+.|+++.||.|||+..+..+. ...++ ....+......|||||+ .|+.-|..|+++|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 47999999988874 2 35789999999999998654333 22222 11122234458999996 9999999999999
Q ss_pred ccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCC
Q 047890 553 GRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632 (1134)
Q Consensus 553 ~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~ 632 (1134)
+.. +++....|.......++.-.+.++|||++++.+.+.+. .+...++.|+|+||.|-|.+. ...+.+.++.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 876 56666666665555556556678999999998865332 122336789999999988764 445555565554
Q ss_pred CCceEEEEeccCc-hh-------------------------------------------------------------HHH
Q 047890 633 PHRQTLMYTATWP-KD-------------------------------------------------------------VRK 650 (1134)
Q Consensus 633 ~~~qiLllSATl~-~~-------------------------------------------------------------v~~ 650 (1134)
.+. .+.+|+|.- .. ++.
T Consensus 1128 a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 443 788899910 00 000
Q ss_pred HHHhhccCC------------------------------eeeeecc--c----------hhhhcccceeeEEEecc----
Q 047890 651 IASDLLVNP------------------------------VQVNIGN--V----------DELAANKAITQHVEVVP---- 684 (1134)
Q Consensus 651 l~~~~l~~~------------------------------~~i~i~~--~----------d~l~~~~~i~~~~~~v~---- 684 (1134)
+..+.+.+- +...+.. . ..+....+++.|..++-
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 000111000 0000000 0 00111122333332221
Q ss_pred ---------------------hhHHHHHHHHHHHHHh---------------cCCEEEEEeCcHHHHHHHHHHhcCC---
Q 047890 685 ---------------------QMEKERRLQQILRAQE---------------RGSRVIIFCSTKRLCDQLARSIGRN--- 725 (1134)
Q Consensus 685 ---------------------~~ek~~~L~~llk~~~---------------~~~kvLVF~nT~~~ae~La~~L~~~--- 725 (1134)
...|..+|..+|..+. .+.++||||.-+..++.+.+.|.+.
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 1224556777776653 2368999999999999999988553
Q ss_pred -CcEEEecCCCChhHHHHHHHHHhcC-CCCee-eecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeE
Q 047890 726 -FGAIAIHGDKSQGERDWVLNQFRSG-KSPIL-VATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAH 802 (1134)
Q Consensus 726 -~~v~~LhG~ms~~eR~~il~~FrsG-e~~VL-VATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~i 802 (1134)
+....++|.....+|.+++++|+++ .++|| ++|.|.+-|||+.+++.||+++-.||+...+|+|.||.|.|++.++.
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 3456899999999999999999998 77876 67799999999999999999999999999999999999999999988
Q ss_pred EEecccchHHHHHH
Q 047890 803 TFFSEQDSKYAADL 816 (1134)
Q Consensus 803 i~~~~~d~~~~~~l 816 (1134)
+|-.-......+++
T Consensus 1447 VyRlItrGTLEEKV 1460 (1549)
T KOG0392|consen 1447 VYRLITRGTLEEKV 1460 (1549)
T ss_pred eeeehhcccHHHHH
Confidence 87654443333443
No 107
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.87 E-value=8.8e-22 Score=241.52 Aligned_cols=316 Identities=18% Similarity=0.222 Sum_probs=218.6
Q ss_pred CCCCHHHHHHHHHHHc----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 478 SSPTPIQAQTWPIALQ----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.+|+.+|.+.|++++. +.+|||++++|.|||+.-+.-+..+..... -....|||||. +.+..|..+|..|.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~----~~gpflvvvpl-st~~~W~~ef~~w~ 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ----IHGPFLVVVPL-STITAWEREFETWT 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh----ccCCeEEEeeh-hhhHHHHHHHHHHh
Confidence 5799999999999874 589999999999999875433222222111 12247888896 66778999999997
Q ss_pred cCCCCceEEecCCCCCchhHHhh----cC-----CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHH
Q 047890 554 RSSRLSCTCLYGGAPKGPQLREL----DQ-----GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQI 624 (1134)
Q Consensus 554 ~~~~i~v~~l~GG~~~~~~l~~l----~~-----~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i 624 (1134)
.+++++.+|.......+..+ .. .+++|++|++.++.-- ..+.--.+.+++|||||+|.+. ...+
T Consensus 444 ---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~--~~~l 516 (1373)
T KOG0384|consen 444 ---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKND--ESKL 516 (1373)
T ss_pred ---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCch--HHHH
Confidence 57888888876655544432 12 3789999998876522 1233336789999999999864 3344
Q ss_pred HHHHHhCCCCceEEEEeccCc-hhHHHHHHh------------------------------------hc----cCC----
Q 047890 625 RKIVNEMPPHRQTLMYTATWP-KDVRKIASD------------------------------------LL----VNP---- 659 (1134)
Q Consensus 625 ~~IL~~l~~~~qiLllSATl~-~~v~~l~~~------------------------------------~l----~~~---- 659 (1134)
...|..+..+- .|++|+|.- ..++++..- ++ ++.
T Consensus 517 ~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 44455554333 688899832 112221110 00 000
Q ss_pred ------eeeeecc------------------------------chhhhcccceeeEEEecchhHHH-----------HH-
Q 047890 660 ------VQVNIGN------------------------------VDELAANKAITQHVEVVPQMEKE-----------RR- 691 (1134)
Q Consensus 660 ------~~i~i~~------------------------------~d~l~~~~~i~~~~~~v~~~ek~-----------~~- 691 (1134)
.++.+.. .......++.|.|..++...+.. ..
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHH
Confidence 0111100 01111223345555554433211 12
Q ss_pred ------------HHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHh-cCCCcEEEecCCCChhHHHHHHHHHhc---CCCCe
Q 047890 692 ------------LQQILRAQ-ERGSRVIIFCSTKRLCDQLARSI-GRNFGAIAIHGDKSQGERDWVLNQFRS---GKSPI 754 (1134)
Q Consensus 692 ------------L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L-~~~~~v~~LhG~ms~~eR~~il~~Frs---Ge~~V 754 (1134)
|..+|-.+ ..+.+||||..-++.++.|+++| .+.|+...|.|.+.-+.|...|..|+. ..+.+
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 22333333 34689999999999999999999 468999999999999999999999985 46679
Q ss_pred eeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEec
Q 047890 755 LVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFS 806 (1134)
Q Consensus 755 LVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~ 806 (1134)
|+||-+.+.|||+-.++.||+||..||+.+.+|++.||.|.|++..+-||-.
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRL 807 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRL 807 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEE
Confidence 9999999999999999999999999999999999999999999988777644
No 108
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=3.7e-21 Score=232.67 Aligned_cols=332 Identities=20% Similarity=0.289 Sum_probs=231.7
Q ss_pred HHHcCCCCCCHHHHHHH--HHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHH
Q 047890 472 MHSAGFSSPTPIQAQTW--PIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEA 549 (1134)
Q Consensus 472 l~~~Gf~~prpiQ~eaI--~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el 549 (1134)
.+..|..+++.||.+++ +.+++++++|..+||+.|||+++-+.++..+.. ....++++.|..+.+..-...+
T Consensus 216 ~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~------~rr~~llilp~vsiv~Ek~~~l 289 (1008)
T KOG0950|consen 216 AKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC------RRRNVLLILPYVSIVQEKISAL 289 (1008)
T ss_pred HHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH------HhhceeEecceeehhHHHHhhh
Confidence 34567778899999995 777889999999999999999998777754432 3447999999999988888889
Q ss_pred HHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc--ccCCCCeEEEEEcchhhhhccCchHHHHHH
Q 047890 550 NKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK--KIDFGQVSLLVLDEADRMLDMGFEPQIRKI 627 (1134)
Q Consensus 550 ~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~--~l~l~~l~lVVIDEAHrll~~gf~~~i~~I 627 (1134)
..|+...++.+....|....... .+...|.|||.++-..++..- .-.+..+++|||||.|.+.+.+....++.+
T Consensus 290 ~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~ 365 (1008)
T KOG0950|consen 290 SPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELL 365 (1008)
T ss_pred hhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHH
Confidence 99998888888777765444322 233679999998755443211 123457899999999999998877777777
Q ss_pred HHhC-----CCCceEEEEeccCchh--HHHHHHhhccCCeeeeeccchhhhcccceeeEEE-----------------ec
Q 047890 628 VNEM-----PPHRQTLMYTATWPKD--VRKIASDLLVNPVQVNIGNVDELAANKAITQHVE-----------------VV 683 (1134)
Q Consensus 628 L~~l-----~~~~qiLllSATl~~~--v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~-----------------~v 683 (1134)
|..+ ....|+|+||||+++. +.+++...+.....-.+ ++....++-..+. ..
T Consensus 366 l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv----~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~ 441 (1008)
T KOG0950|consen 366 LAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPV----PLKEYIKPGSLIYESSRNKVLREIANLYSSNL 441 (1008)
T ss_pred HHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcc----cchhccCCCcccccchhhHHHHHhhhhhhhhc
Confidence 6643 3346799999998743 33333332211100000 0000000100100 00
Q ss_pred chhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC---------------------------------------
Q 047890 684 PQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR--------------------------------------- 724 (1134)
Q Consensus 684 ~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~--------------------------------------- 724 (1134)
...+.+..+.-+.+.+..+..+||||.+++.|+.++..+.+
T Consensus 442 g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti 521 (1008)
T KOG0950|consen 442 GDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTI 521 (1008)
T ss_pred ccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheec
Confidence 11111112222333445567899999999988887654411
Q ss_pred CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecC----CCChhhHHHhhhccCcCC--Cc
Q 047890 725 NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDF----PNGVEDYVHRIGRTGRAG--AT 798 (1134)
Q Consensus 725 ~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~----P~s~~~yiQRiGRagR~G--qk 798 (1134)
.+++..+|.+++.++|+.|...|++|.+.||+||+.++.|+++|...++|-+-. ..+..+|.|++|||||+| ..
T Consensus 522 ~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 522 PYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred cccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccC
Confidence 135788999999999999999999999999999999999999998888875432 236789999999999987 57
Q ss_pred ceeEEEecccchHHHHHHH
Q 047890 799 GVAHTFFSEQDSKYAADLV 817 (1134)
Q Consensus 799 G~~ii~~~~~d~~~~~~l~ 817 (1134)
|.+++++.+.+.....+++
T Consensus 602 GdsiLI~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 602 GDSILIIKSSEKKRVRELV 620 (1008)
T ss_pred cceEEEeeccchhHHHHHH
Confidence 8899999888876555443
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=1e-19 Score=222.91 Aligned_cols=315 Identities=21% Similarity=0.246 Sum_probs=219.2
Q ss_pred CCCCHHHHHHHHHHHcC----CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 478 SSPTPIQAQTWPIALQG----RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~g----rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
..+++-|..|+..+.+. ...|+.+.||||||.+|+-.+-..|. .+..+|||+|..+|..|+.+.|+..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-------~GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-------QGKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-------cCCEEEEEeccccchHHHHHHHHHHh
Confidence 46889999999999876 67899999999999999988888877 57799999999999999999998765
Q ss_pred cCCCCceEEecCCCCCch----hHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC-----chHHH
Q 047890 554 RSSRLSCTCLYGGAPKGP----QLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG-----FEPQI 624 (1134)
Q Consensus 554 ~~~~i~v~~l~GG~~~~~----~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g-----f~~~i 624 (1134)
. .++.+++++.+..+ +.+.....+.|||+|--.|+ ..+.++++|||||-|.-.... +...-
T Consensus 270 g---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 270 G---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred C---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 3 56677777665443 33344466899999954432 357799999999999754321 22222
Q ss_pred HHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhH------HHHHHHHHHHH
Q 047890 625 RKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQME------KERRLQQILRA 698 (1134)
Q Consensus 625 ~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~e------k~~~L~~llk~ 698 (1134)
..++.....++.+|+-|||. .++.+..-.-.....+.+......+... ....+++-.... ....+..+-+.
T Consensus 340 vA~~Ra~~~~~pvvLgSATP--SLES~~~~~~g~y~~~~L~~R~~~a~~p-~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATP--SLESYANAESGKYKLLRLTNRAGRARLP-RVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHHhCCCEEEecCCC--CHHHHHhhhcCceEEEEccccccccCCC-cceEEeccccccccCccCCHHHHHHHHHH
Confidence 23344444567799999995 4444444322222333332222211111 111222211111 14456666677
Q ss_pred HhcCCEEEEEeCcHH------------------------------------------------------------HHHHH
Q 047890 699 QERGSRVIIFCSTKR------------------------------------------------------------LCDQL 718 (1134)
Q Consensus 699 ~~~~~kvLVF~nT~~------------------------------------------------------------~ae~L 718 (1134)
+..++++|||.|.+- -++++
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 788899999998542 12444
Q ss_pred HHHhcC---CCcEEEecCCCChhH--HHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCC------------C
Q 047890 719 ARSIGR---NFGAIAIHGDKSQGE--RDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPN------------G 781 (1134)
Q Consensus 719 a~~L~~---~~~v~~LhG~ms~~e--R~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~------------s 781 (1134)
++.|.+ +..++.+.++.+..+ -+.+++.|.+|+.+|||.|.+++.|+|+|++++|..+|... .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 444443 456888888877644 56789999999999999999999999999999977666432 2
Q ss_pred hhhHHHhhhccCcCCCcceeEEEecccchHH
Q 047890 782 VEDYVHRIGRTGRAGATGVAHTFFSEQDSKY 812 (1134)
Q Consensus 782 ~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~ 812 (1134)
...+.|-.||+||.+++|.+++-....+...
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~ 607 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPDHPA 607 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCCcHH
Confidence 3456899999999999999999887766443
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.84 E-value=4.4e-20 Score=221.80 Aligned_cols=296 Identities=20% Similarity=0.251 Sum_probs=190.9
Q ss_pred CCCCHHHHHHHHHHHc----C-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 478 SSPTPIQAQTWPIALQ----G-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~----g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
..+|.+|..||..+.+ + +.+||++.||+|||.+++..++.+++. ....+||+|+.+++|++|.+..++.+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHHh
Confidence 3589999999987764 3 459999999999999988877777663 24569999999999999999999998
Q ss_pred ccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc-----ccCCCCeEEEEEcchhhhhccCchHHHHHH
Q 047890 553 GRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK-----KIDFGQVSLLVLDEADRMLDMGFEPQIRKI 627 (1134)
Q Consensus 553 ~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~-----~l~l~~l~lVVIDEAHrll~~gf~~~i~~I 627 (1134)
..... .+..+. +.. ....+.|.|+|+..+...+... .+....++|||||||||-.. .....|
T Consensus 239 ~P~~~-~~n~i~-~~~-------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~----~~~~~I 305 (875)
T COG4096 239 LPFGT-KMNKIE-DKK-------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY----SEWSSI 305 (875)
T ss_pred CCCcc-ceeeee-ccc-------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH----hhhHHH
Confidence 75422 222222 111 1124789999999999887654 34456699999999999543 344466
Q ss_pred HHhCCCCceEEEEeccCchhHHH-------------------HHHhhccCCeeeeeccc--------hhh-----hcccc
Q 047890 628 VNEMPPHRQTLMYTATWPKDVRK-------------------IASDLLVNPVQVNIGNV--------DEL-----AANKA 675 (1134)
Q Consensus 628 L~~l~~~~qiLllSATl~~~v~~-------------------l~~~~l~~~~~i~i~~~--------d~l-----~~~~~ 675 (1134)
+..+... ++++|||+...+.. +..-+|..+..+.+... +.. ...+.
T Consensus 306 ~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~ 383 (875)
T COG4096 306 LDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEA 383 (875)
T ss_pred HHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccc
Confidence 6655443 34559996543221 11112222211111100 000 00000
Q ss_pred e--e-eEEEe-------cchhHHHHHHHHHHHHHhc------CCEEEEEeCcHHHHHHHHHHhcCCC------cEEEecC
Q 047890 676 I--T-QHVEV-------VPQMEKERRLQQILRAQER------GSRVIIFCSTKRLCDQLARSIGRNF------GAIAIHG 733 (1134)
Q Consensus 676 i--~-~~~~~-------v~~~ek~~~L~~llk~~~~------~~kvLVF~nT~~~ae~La~~L~~~~------~v~~LhG 733 (1134)
+ . +.+.. +-...+......+...+.. -.|+||||.+..+|+.+...|.+.+ -+..|.+
T Consensus 384 i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~ 463 (875)
T COG4096 384 IDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG 463 (875)
T ss_pred cCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec
Confidence 1 0 00000 0011111112222222222 3699999999999999999996533 2566666
Q ss_pred CCChhHHHHHHHHHhc--CCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcC
Q 047890 734 DKSQGERDWVLNQFRS--GKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRA 795 (1134)
Q Consensus 734 ~ms~~eR~~il~~Frs--Ge~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~ 795 (1134)
+-.... ..|..|.. .--+|.|+.+++..|||+|.|.+||++..-.|...|.|++||.-|.
T Consensus 464 d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 464 DAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 554433 33455544 3346888889999999999999999999999999999999999995
No 111
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=5.2e-19 Score=219.99 Aligned_cols=299 Identities=17% Similarity=0.189 Sum_probs=180.6
Q ss_pred CCHHHHHHHHHHHcC----------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHH
Q 047890 480 PTPIQAQTWPIALQG----------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEA 549 (1134)
Q Consensus 480 prpiQ~eaI~~il~g----------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el 549 (1134)
++.+|.+||..+++. +..||+.+||||||++++..+..++.. ...++||||||+.+|..||.++|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-----LKNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-----cCCCeEEEEECcHHHHHHHHHHH
Confidence 899999999887532 579999999999999987777665532 24679999999999999999999
Q ss_pred HHhccCCCCceEEecCCCCCchhHHhhc-CCCcEEEeChHHHHHHHHhc--ccCCCC-eEEEEEcchhhhhccCchHHHH
Q 047890 550 NKFGRSSRLSCTCLYGGAPKGPQLRELD-QGADIVVATPGRLNDILEMK--KIDFGQ-VSLLVLDEADRMLDMGFEPQIR 625 (1134)
Q Consensus 550 ~kl~~~~~i~v~~l~GG~~~~~~l~~l~-~~~dIIVaTPerL~~lL~~~--~l~l~~-l~lVVIDEAHrll~~gf~~~i~ 625 (1134)
.+++... . ....+.......+. ....|+|+|.++|...+... .+.... -.+||+||||+.... .+.
T Consensus 314 ~~~~~~~----~--~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~~ 383 (667)
T TIGR00348 314 QSLQKDC----A--ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----ELA 383 (667)
T ss_pred HhhCCCC----C--cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HHH
Confidence 9986421 0 01111111222222 23689999999998644321 111111 238999999996543 233
Q ss_pred HHHHhCCCCceEEEEeccCchhH-HHHHHhhc--cCCeeeeeccchhhhcccceee-EEEe-------------------
Q 047890 626 KIVNEMPPHRQTLMYTATWPKDV-RKIASDLL--VNPVQVNIGNVDELAANKAITQ-HVEV------------------- 682 (1134)
Q Consensus 626 ~IL~~l~~~~qiLllSATl~~~v-~~l~~~~l--~~~~~i~i~~~d~l~~~~~i~~-~~~~------------------- 682 (1134)
.++...-++..+|+||||+-... ..-...+. .......... .+......+.. .+..
T Consensus 384 ~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~-~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 384 KNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFI-TDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred HHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeH-HHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 44433234456999999964211 10001110 0011111110 11111100000 0000
Q ss_pred -------cchhHH--------------------HHHHHHHHHHH----h-cCCEEEEEeCcHHHHHHHHHHhcCC-----
Q 047890 683 -------VPQMEK--------------------ERRLQQILRAQ----E-RGSRVIIFCSTKRLCDQLARSIGRN----- 725 (1134)
Q Consensus 683 -------v~~~ek--------------------~~~L~~llk~~----~-~~~kvLVF~nT~~~ae~La~~L~~~----- 725 (1134)
+....+ ......+++.. . ...+++|||.++..|..+++.|.+.
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 000000 01111122211 1 2479999999999999999887442
Q ss_pred -CcEEEecCCCChh---------------------HHHHHHHHHhc-CCCCeeeecccceeccccCcceEEEeecCCCCh
Q 047890 726 -FGAIAIHGDKSQG---------------------ERDWVLNQFRS-GKSPILVATDVAARGLDIKDIRVVINYDFPNGV 782 (1134)
Q Consensus 726 -~~v~~LhG~ms~~---------------------eR~~il~~Frs-Ge~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~ 782 (1134)
...+++++..... ....++++|++ ++++|||+++++..|+|.|.+++++...+-.+
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~- 621 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY- 621 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-
Confidence 2345565543322 12478899976 68899999999999999999999997776665
Q ss_pred hhHHHhhhccCcC
Q 047890 783 EDYVHRIGRTGRA 795 (1134)
Q Consensus 783 ~~yiQRiGRagR~ 795 (1134)
..++|++||+.|.
T Consensus 622 h~LlQai~R~nR~ 634 (667)
T TIGR00348 622 HGLLQAIARTNRI 634 (667)
T ss_pred cHHHHHHHHhccc
Confidence 4589999999993
No 112
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.83 E-value=1.5e-19 Score=214.33 Aligned_cols=334 Identities=18% Similarity=0.262 Sum_probs=222.8
Q ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 476 GFSSPTPIQAQTWPIAL----QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il----~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
++. |-++|.-.|++++ .+-+.||++++|.|||+..+ ..+.+|.+... ...-|||||+ +-.++|..||.+
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~----~gpHLVVvPs-STleNWlrEf~k 469 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGN----PGPHLVVVPS-STLENWLREFAK 469 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCC----CCCcEEEecc-hhHHHHHHHHHH
Confidence 443 8999999999886 45678999999999998744 34555554332 2356888997 666889999999
Q ss_pred hccCCCCceEEecCCCCCchhHHhh----cCCCcEEEeChHHHHHHHH-hcccCCCCeEEEEEcchhhhhccCchHHHHH
Q 047890 552 FGRSSRLSCTCLYGGAPKGPQLREL----DQGADIVVATPGRLNDILE-MKKIDFGQVSLLVLDEADRMLDMGFEPQIRK 626 (1134)
Q Consensus 552 l~~~~~i~v~~l~GG~~~~~~l~~l----~~~~dIIVaTPerL~~lL~-~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~ 626 (1134)
|+.. +.+...+|.......++.. ....+|||+|+.....--. ...+...+++++|+||+|.|.+.. ...++.
T Consensus 470 wCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~ 546 (941)
T KOG0389|consen 470 WCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKH 546 (941)
T ss_pred hCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHH
Confidence 9865 6666777766544444432 2258999999876643211 222334468899999999888764 334444
Q ss_pred HHHhCCCCceEEEEeccCc-hhHHHHH-----------------------------------------------------
Q 047890 627 IVNEMPPHRQTLMYTATWP-KDVRKIA----------------------------------------------------- 652 (1134)
Q Consensus 627 IL~~l~~~~qiLllSATl~-~~v~~l~----------------------------------------------------- 652 (1134)
++ .++ ....|++|+|.- .++.+++
T Consensus 547 LM-~I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 547 LM-SIN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFI 624 (941)
T ss_pred hc-ccc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHH
Confidence 33 333 334788999921 0000000
Q ss_pred -----Hhhcc----CCeeee---ec-------------------cch---------hhhcccceeeEEE-----------
Q 047890 653 -----SDLLV----NPVQVN---IG-------------------NVD---------ELAANKAITQHVE----------- 681 (1134)
Q Consensus 653 -----~~~l~----~~~~i~---i~-------------------~~d---------~l~~~~~i~~~~~----------- 681 (1134)
..+|. +...|. .. ... .+.....+..|..
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L 704 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKL 704 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHH
Confidence 00000 000000 00 000 0000000000000
Q ss_pred ---------------------------------------------------ecchhHHHHHHHHHHHHHh-cCCEEEEEe
Q 047890 682 ---------------------------------------------------VVPQMEKERRLQQILRAQE-RGSRVIIFC 709 (1134)
Q Consensus 682 ---------------------------------------------------~v~~~ek~~~L~~llk~~~-~~~kvLVF~ 709 (1134)
.+-...|...|..+|..+. .+.+||||.
T Consensus 705 ~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFS 784 (941)
T KOG0389|consen 705 RKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFS 784 (941)
T ss_pred HHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEee
Confidence 0001123445666666554 468999999
Q ss_pred CcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCC--CeeeecccceeccccCcceEEEeecCCCChhhHH
Q 047890 710 STKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS--PILVATDVAARGLDIKDIRVVINYDFPNGVEDYV 786 (1134)
Q Consensus 710 nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~--~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yi 786 (1134)
.....++.|...|.. ++....|.|.....+|..+|..|...+- -+|++|.+.+-|||+..+++||.+|...++-+..
T Consensus 785 QFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 785 QFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 999999999988854 7889999999999999999999996543 4689999999999999999999999999999999
Q ss_pred HhhhccCcCCCcceeEEEecccchHHHHHHHHHHH
Q 047890 787 HRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLE 821 (1134)
Q Consensus 787 QRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~ 821 (1134)
|+..||.|.|+...+.||-.-.+..+.+.|.+..+
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~ 899 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAK 899 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHH
Confidence 99999999999888877766666666666655544
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.83 E-value=2.7e-18 Score=211.91 Aligned_cols=126 Identities=21% Similarity=0.364 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccC
Q 047890 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK 768 (1134)
Q Consensus 690 ~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp 768 (1134)
..+..+.+....+.++||||+|++.++.|++.|.+ ++.+..+|++++..+|.++++.|+.|++.|||||+++++|+|++
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 33444444456788999999999999999999965 68899999999999999999999999999999999999999999
Q ss_pred cceEEEeec-----CCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHH
Q 047890 769 DIRVVINYD-----FPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADL 816 (1134)
Q Consensus 769 ~v~~VI~~d-----~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l 816 (1134)
++++||++| .|.+...|+||+||++|. ..|.|++|++..+......+
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 999999998 788999999999999998 68999999887655443333
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.82 E-value=7.3e-19 Score=201.73 Aligned_cols=164 Identities=20% Similarity=0.299 Sum_probs=125.0
Q ss_pred CceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhH-HHHHHHHHHHHHhcCCEEEEEeCcH
Q 047890 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQME-KERRLQQILRAQERGSRVIIFCSTK 712 (1134)
Q Consensus 634 ~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~e-k~~~L~~llk~~~~~~kvLVF~nT~ 712 (1134)
..|+|++|||......+.....+.+-+.- ....+...+.+-+... ..+.+.++.+....+.++||-+-|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIR---------PTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTK 456 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIR---------PTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTK 456 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeec---------CCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehH
Confidence 35899999996544433333122111111 1111222333333332 3455666666677889999999999
Q ss_pred HHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCC-----CChhhHH
Q 047890 713 RLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFP-----NGVEDYV 786 (1134)
Q Consensus 713 ~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P-----~s~~~yi 786 (1134)
+.++.|.++|.+ ++++..+|+++..-+|.+|+.+++.|+++|||.-+++-+|||+|.|.+|..+|.. .|..+++
T Consensus 457 kmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 457 KMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 999999999965 7999999999999999999999999999999999999999999999999998854 5889999
Q ss_pred HhhhccCcCCCcceeEEEecc
Q 047890 787 HRIGRTGRAGATGVAHTFFSE 807 (1134)
Q Consensus 787 QRiGRagR~GqkG~~ii~~~~ 807 (1134)
|-|||++|. -.|.+++|.+.
T Consensus 537 QtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 537 QTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHHHhhc-cCCeEEEEchh
Confidence 999999996 57888888764
No 115
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.82 E-value=4.4e-19 Score=201.08 Aligned_cols=315 Identities=16% Similarity=0.218 Sum_probs=211.1
Q ss_pred CCCCHHHHHHHHHHHc-CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC
Q 047890 478 SSPTPIQAQTWPIALQ-GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS 556 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~-grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~ 556 (1134)
..|.|+|++.+.+.++ |..+|+.++||.|||+.++..+..+.. ...+|||||. +|...|.++|+.|+...
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra--------EwplliVcPA-svrftWa~al~r~lps~ 267 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA--------EWPLLIVCPA-SVRFTWAKALNRFLPSI 267 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh--------cCcEEEEecH-HHhHHHHHHHHHhcccc
Confidence 3468999999999886 578999999999999998876655432 3468999996 88899999999998653
Q ss_pred CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCce
Q 047890 557 RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636 (1134)
Q Consensus 557 ~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~q 636 (1134)
-- +.++.++.+.. ..+.....|.|.+++.|..+-. .+...++.+||+||+|.|.+.. ...++.++..+.....
T Consensus 268 ~p-i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 268 HP-IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKH 340 (689)
T ss_pred cc-eEEEecccCCc---cccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhh
Confidence 22 44444443322 2233446799999988755432 3334568899999999877643 4456666666666667
Q ss_pred EEEEeccCc----h---------------hHHHHHHhhccCC---eeeee---ccchhhh------------------cc
Q 047890 637 TLMYTATWP----K---------------DVRKIASDLLVNP---VQVNI---GNVDELA------------------AN 673 (1134)
Q Consensus 637 iLllSATl~----~---------------~v~~l~~~~l~~~---~~i~i---~~~d~l~------------------~~ 673 (1134)
+|+||+|.. . +..+++..|+... ..... .+..++. ..
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999931 1 1122222222100 00000 0000000 00
Q ss_pred cceeeEEE----------------------ecchhHH----------------HHHHHHHHHH-----HhcCCEEEEEeC
Q 047890 674 KAITQHVE----------------------VVPQMEK----------------ERRLQQILRA-----QERGSRVIIFCS 710 (1134)
Q Consensus 674 ~~i~~~~~----------------------~v~~~ek----------------~~~L~~llk~-----~~~~~kvLVF~n 710 (1134)
......+. .+...++ ...+.+.+.. .....|+||||.
T Consensus 421 PpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaH 500 (689)
T KOG1000|consen 421 PPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAH 500 (689)
T ss_pred CccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEeh
Confidence 00000000 1111111 1111122211 234579999999
Q ss_pred cHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcC-CCCe-eeecccceeccccCcceEEEeecCCCChhhHHH
Q 047890 711 TKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSG-KSPI-LVATDVAARGLDIKDIRVVINYDFPNGVEDYVH 787 (1134)
Q Consensus 711 T~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsG-e~~V-LVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQ 787 (1134)
.....+.|...+. ++++.+.|+|..+..+|....+.|... ++.| |++..+++.||++...++||+..++|++--++|
T Consensus 501 H~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQ 580 (689)
T KOG1000|consen 501 HQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQ 580 (689)
T ss_pred hHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEe
Confidence 9999999999885 578999999999999999999999854 4554 455689999999999999999999999999999
Q ss_pred hhhccCcCCCcceeEEEeccc
Q 047890 788 RIGRTGRAGATGVAHTFFSEQ 808 (1134)
Q Consensus 788 RiGRagR~GqkG~~ii~~~~~ 808 (1134)
+-.|+.|.|++..+.++|.-.
T Consensus 581 AEDRaHRiGQkssV~v~ylvA 601 (689)
T KOG1000|consen 581 AEDRAHRIGQKSSVFVQYLVA 601 (689)
T ss_pred chhhhhhccccceeeEEEEEe
Confidence 999999999987776665543
No 116
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.82 E-value=2.3e-18 Score=220.10 Aligned_cols=121 Identities=14% Similarity=0.246 Sum_probs=87.2
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcCC---CcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceE--EEe
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGRN---FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV--VIN 775 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~~---~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~--VI~ 775 (1134)
..+++||||++.+.++.++..|... ....++..+.. ..|.+++++|++++..|||+|+.+.+|||+++..+ ||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 3568999999999999999998641 12223333333 57899999999999999999999999999988664 667
Q ss_pred ecCCCC------------------------------hhhHHHhhhccCcCCCcceeEEEeccc--chHHHHHHHHHHHh
Q 047890 776 YDFPNG------------------------------VEDYVHRIGRTGRAGATGVAHTFFSEQ--DSKYAADLVKVLEG 822 (1134)
Q Consensus 776 ~d~P~s------------------------------~~~yiQRiGRagR~GqkG~~ii~~~~~--d~~~~~~l~k~L~~ 822 (1134)
..+|.. ...+.|.+||+-|..+..-++++++.. ...+-..+++.|..
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 666531 123469999999987665566666654 33344556665543
No 117
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.80 E-value=4.1e-18 Score=211.60 Aligned_cols=307 Identities=19% Similarity=0.271 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH-hccCCCCce
Q 047890 482 PIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK-FGRSSRLSC 560 (1134)
Q Consensus 482 piQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k-l~~~~~i~v 560 (1134)
..-.+.+..+..+.-+||+++||||||.. +|.+. +.... ....+++++=|.|.-|..+.+.+.. ++...+-.|
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~l-le~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFL-LEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHH-Hhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 33445566666778889999999999976 33222 12111 2345788888987666666665543 333333333
Q ss_pred EEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh-hhccCc-hHHHHHHHHhCCCCceEE
Q 047890 561 TCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR-MLDMGF-EPQIRKIVNEMPPHRQTL 638 (1134)
Q Consensus 561 ~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr-ll~~gf-~~~i~~IL~~l~~~~qiL 638 (1134)
...+-.. ........|-++|.+.|+..+.... .|+.+++|||||+|. .++.++ ...++.++...+.+.++|
T Consensus 127 GY~iRfe------~~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiI 199 (845)
T COG1643 127 GYSIRFE------SKVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLI 199 (845)
T ss_pred eEEEEee------ccCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEE
Confidence 2222111 1123346899999999999886444 488999999999995 343333 234455566777778999
Q ss_pred EEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEE-EecchhH-HHHHHHHHHHHH--hcCCEEEEEeCcHHH
Q 047890 639 MYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHV-EVVPQME-KERRLQQILRAQ--ERGSRVIIFCSTKRL 714 (1134)
Q Consensus 639 llSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~-~~v~~~e-k~~~L~~llk~~--~~~~kvLVF~nT~~~ 714 (1134)
+||||+.. +++... +.+.-.+.+.... ..+..++ ....... -...+...+... ...+.+|||.+-.++
T Consensus 200 imSATld~--~rfs~~-f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 200 IMSATLDA--ERFSAY-FGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred EEecccCH--HHHHHH-cCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHH
Confidence 99999753 344433 3332223332111 1122222 1111111 233333333332 235789999999999
Q ss_pred HHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecC-----------
Q 047890 715 CDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDF----------- 778 (1134)
Q Consensus 715 ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~----------- 778 (1134)
++.+++.|.+ .+.+..||+.++.++..++++--..++.+|++||++++.+|.|++|.+||.-+.
T Consensus 272 I~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g 351 (845)
T COG1643 272 IERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTG 351 (845)
T ss_pred HHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccC
Confidence 9999888864 456889999999999999988877887889999999999999999999997442
Q ss_pred -------CCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 779 -------PNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 779 -------P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
|-|-++..||.||+||. .+|+||-+|++++.
T Consensus 352 ~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~ 389 (845)
T COG1643 352 LTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDF 389 (845)
T ss_pred ceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHH
Confidence 23567888999999998 57999999987554
No 118
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.80 E-value=3.3e-18 Score=177.70 Aligned_cols=186 Identities=43% Similarity=0.683 Sum_probs=150.5
Q ss_pred HcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 474 SAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 474 ~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
..++..++++|.+++..++.. +.+++.++||+|||.+++.+++..+... ...++||++|+++++.||.+.+.++
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-----~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-----KGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-----CCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 356788999999999999998 9999999999999998888887766532 1458999999999999999999998
Q ss_pred ccCCCCceEEecCCCCCchhHHhhcCCC-cEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhC
Q 047890 553 GRSSRLSCTCLYGGAPKGPQLRELDQGA-DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM 631 (1134)
Q Consensus 553 ~~~~~i~v~~l~GG~~~~~~l~~l~~~~-dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l 631 (1134)
+...........++.........+.... +|+++|++.|.+.+....+....+++|||||+|.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7654434444455544444455555555 999999999999988777777889999999999988766788888888888
Q ss_pred CCCceEEEEeccCchhHHHHHHhhccCCeeeee
Q 047890 632 PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNI 664 (1134)
Q Consensus 632 ~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i 664 (1134)
....+++++|||++..+......++.....+..
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 778889999999998888888887775554443
No 119
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=3.2e-18 Score=211.47 Aligned_cols=125 Identities=22% Similarity=0.330 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHHH-HhcCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccce
Q 047890 685 QMEKERRLQQILRA-QERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762 (1134)
Q Consensus 685 ~~ek~~~L~~llk~-~~~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~ 762 (1134)
..+|...|...+.. ...+.++||||+|++.++.|++.|. .++.+.+||+ .+.+|+..+..|+.+...|+|||++++
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAG 657 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAG 657 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcC
Confidence 34566666655543 3567899999999999999999995 4788999997 677999999999999999999999999
Q ss_pred eccccC---cce-----EEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchH
Q 047890 763 RGLDIK---DIR-----VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSK 811 (1134)
Q Consensus 763 ~GLDIp---~v~-----~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~ 811 (1134)
||+||+ .|. +||+++.|.+...|.|++||+||.|.+|.+++|++.+|.-
T Consensus 658 RGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 658 RGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 999998 454 3588999999999999999999999999999999887643
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.78 E-value=8.2e-17 Score=199.85 Aligned_cols=137 Identities=21% Similarity=0.360 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcc
Q 047890 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770 (1134)
Q Consensus 692 L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v 770 (1134)
+..+.+....+.++||||+|++.++.|++.|.. ++.+..+|++++..+|..+++.|+.|++.|||||+++++|+|++++
T Consensus 436 ~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 436 LSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 344444445678999999999999999999965 6889999999999999999999999999999999999999999999
Q ss_pred eEEEeecC-----CCChhhHHHhhhccCcCCCcceeEEEeccc---------chHHHHHHHHHHHhhcCCCCH
Q 047890 771 RVVINYDF-----PNGVEDYVHRIGRTGRAGATGVAHTFFSEQ---------DSKYAADLVKVLEGANQHVPP 829 (1134)
Q Consensus 771 ~~VI~~d~-----P~s~~~yiQRiGRagR~GqkG~~ii~~~~~---------d~~~~~~l~k~L~~~~~~lp~ 829 (1134)
++||++|. |.+...|+||+||+||. ..|.|++|++.. +.....++...++.....+|.
T Consensus 516 ~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 516 SLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred cEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 99999885 67999999999999996 789999999853 333344444444444444443
No 121
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.78 E-value=3.6e-18 Score=193.58 Aligned_cols=294 Identities=23% Similarity=0.295 Sum_probs=203.7
Q ss_pred CCCCHHHHHHHHHHHcC---CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 478 SSPTPIQAQTWPIALQG---RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~g---rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+.++|+|+..+..+.-+ +..||+.|+|+|||++-+.++... ...|||||.+..-++||...|+.|..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti----------kK~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI----------KKSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee----------cccEEEEecCccCHHHHHHHHHhhcc
Confidence 35899999999999865 678999999999999866554432 34799999999999999999999986
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHH--------hcccCCCCeEEEEEcchhhhhccCchHHHHH
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE--------MKKIDFGQVSLLVLDEADRMLDMGFEPQIRK 626 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~--------~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~ 626 (1134)
...-.++..+.+.. +.+..++.|+|+|+..+..--+ ...+.-..++++|+||+|.+-..-| ++
T Consensus 371 i~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF----RR 441 (776)
T KOG1123|consen 371 IQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF----RR 441 (776)
T ss_pred cCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH----HH
Confidence 65555555554432 2345678999999866532111 0122345789999999998765434 44
Q ss_pred HHHhCCCCceEEEEeccCchhHHHHHH-hhccCCeeeeeccchhhhcccceee----E----------------------
Q 047890 627 IVNEMPPHRQTLMYTATWPKDVRKIAS-DLLVNPVQVNIGNVDELAANKAITQ----H---------------------- 679 (1134)
Q Consensus 627 IL~~l~~~~qiLllSATl~~~v~~l~~-~~l~~~~~i~i~~~d~l~~~~~i~~----~---------------------- 679 (1134)
++..+..++ .|+||||+-.+..++.. ++|..|...+....+ +.....|.. .
T Consensus 442 Vlsiv~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmd-L~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 442 VLSIVQAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMD-LQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHHHHh-hccceeEEeeccccccccceeecchhhhccHHH-HHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 444443444 69999997555443322 234444333322221 111111100 0
Q ss_pred EEecchhHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHh-cCCCCeeee
Q 047890 680 VEVVPQMEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFR-SGKSPILVA 757 (1134)
Q Consensus 680 ~~~v~~~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~Fr-sGe~~VLVA 757 (1134)
+..+-...|......+++.. ..+.|+|||..+.-.+...+-.|.+- .|.|..++.+|.+||+.|+ +..++-|+-
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp----fIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP----FIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc----eEECCCchhHHHHHHHhcccCCccceEEE
Confidence 01111222333444444433 36889999999999998888888654 5889999999999999998 557788899
Q ss_pred cccceeccccCcceEEEeecCCC-ChhhHHHhhhccCcCC
Q 047890 758 TDVAARGLDIKDIRVVINYDFPN-GVEDYVHRIGRTGRAG 796 (1134)
Q Consensus 758 Tdvl~~GLDIp~v~~VI~~d~P~-s~~~yiQRiGRagR~G 796 (1134)
+.+....||+|.++++|.+.... |-..-.||+||+.|+-
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 99999999999999999988654 5678899999999974
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=4.7e-17 Score=196.64 Aligned_cols=314 Identities=20% Similarity=0.190 Sum_probs=207.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|++.|.-+.-.++.|+ |+...||.|||+++.++++.... .+..|.||+|+.-||.+-++++..+...+++
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL-------~G~~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL-------QGRRVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH-------cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 48999999988888765 88999999999999998876654 5778999999999999999999999999999
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhc------ccCCCCeEEEEEcchhhhhcc-------------
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMK------KIDFGQVSLLVLDEADRMLDM------------- 618 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~------~l~l~~l~lVVIDEAHrll~~------------- 618 (1134)
.+.++.++....+....+ .|+|+++|...| +++|..+ ......+.++||||+|.++-.
T Consensus 149 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~ 226 (764)
T PRK12326 149 TVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTP 226 (764)
T ss_pred EEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCc
Confidence 999998876654433333 589999998765 3444322 223466889999999975410
Q ss_pred --CchHHHHHHHHhCCCC--------ceEEEEe-----------------------------------------------
Q 047890 619 --GFEPQIRKIVNEMPPH--------RQTLMYT----------------------------------------------- 641 (1134)
Q Consensus 619 --gf~~~i~~IL~~l~~~--------~qiLllS----------------------------------------------- 641 (1134)
.....+..++..+... .+.+.+|
T Consensus 227 ~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 306 (764)
T PRK12326 227 GEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIV 306 (764)
T ss_pred chhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 1112222233322211 1122222
Q ss_pred ---------------------------------------------------------------ccCchhHHHHHHhhccC
Q 047890 642 ---------------------------------------------------------------ATWPKDVRKIASDLLVN 658 (1134)
Q Consensus 642 ---------------------------------------------------------------ATl~~~v~~l~~~~l~~ 658 (1134)
+|...+..++.+.|-.+
T Consensus 307 ~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~ 386 (764)
T PRK12326 307 RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLG 386 (764)
T ss_pred ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCc
Confidence 22211111111111111
Q ss_pred CeeeeeccchhhhcccceeeEEEecchhHHHH-HHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCC
Q 047890 659 PVQVNIGNVDELAANKAITQHVEVVPQMEKER-RLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKS 736 (1134)
Q Consensus 659 ~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~-~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms 736 (1134)
.+ .+...... ........ ......+|.. ++.++.+....+..|||.|.+++..+.|++.|.+ +++..+|+....
T Consensus 387 Vv--~IPtnkp~-~R~d~~d~-iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 387 VS--VIPPNKPN-IREDEADR-VYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred EE--ECCCCCCc-eeecCCCc-eEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 00 00000000 00000111 1122333433 4455556667899999999999999999999965 678888887644
Q ss_pred hhHHHHHHHHHhcC-CCCeeeecccceeccccCc---------------ceEEEeecCCCChhhHHHhhhccCcCCCcce
Q 047890 737 QGERDWVLNQFRSG-KSPILVATDVAARGLDIKD---------------IRVVINYDFPNGVEDYVHRIGRTGRAGATGV 800 (1134)
Q Consensus 737 ~~eR~~il~~FrsG-e~~VLVATdvl~~GLDIp~---------------v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~ 800 (1134)
.++ .+|+.. .| .-.|.|||++++||.||.- =-+||-...+.|.....|..||+||-|.+|.
T Consensus 463 ~~E-A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEE-ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhH-HHHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 333 333332 33 3468999999999999952 1268889999999999999999999999999
Q ss_pred eEEEecccch
Q 047890 801 AHTFFSEQDS 810 (1134)
Q Consensus 801 ~ii~~~~~d~ 810 (1134)
+..|++-+|.
T Consensus 540 s~f~lSleDd 549 (764)
T PRK12326 540 SVFFVSLEDD 549 (764)
T ss_pred eeEEEEcchh
Confidence 9999987664
No 123
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.77 E-value=9.5e-17 Score=195.49 Aligned_cols=278 Identities=25% Similarity=0.401 Sum_probs=188.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
|| +|...|+-=..-++.|+.+-+.||||.|||.--++.++.+.. .+.+++||+||..|+.|+++.+.+|...
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK-------KGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh-------cCCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 55 799999998899999999999999999999654444443332 5679999999999999999999999866
Q ss_pred CC-CceEEecCCC-C---CchhHHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc-----------
Q 047890 556 SR-LSCTCLYGGA-P---KGPQLRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM----------- 618 (1134)
Q Consensus 556 ~~-i~v~~l~GG~-~---~~~~l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~----------- 618 (1134)
.+ ..+.+++-+. . +.+.++.+.+ +.+|+|+|..-|...+. .+..-++++|++|.+|.++..
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e--~L~~~kFdfifVDDVDA~LkaskNvDriL~Ll 229 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE--ELSKLKFDFIFVDDVDAILKASKNVDRLLRLL 229 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH--HhcccCCCEEEEccHHHHHhccccHHHHHHHc
Confidence 55 4444433332 2 2334445554 58999999766654432 222247899999999976532
Q ss_pred CchHH-----------------------HHHHHHh--------CCCCceEEEEeccCchhH--HHHHHhhccCCeeeeec
Q 047890 619 GFEPQ-----------------------IRKIVNE--------MPPHRQTLMYTATWPKDV--RKIASDLLVNPVQVNIG 665 (1134)
Q Consensus 619 gf~~~-----------------------i~~IL~~--------l~~~~qiLllSATl~~~v--~~l~~~~l~~~~~i~i~ 665 (1134)
||... +.+++.. -.+..++|+.|||..+.- ..+.+.++. +.++
T Consensus 230 Gf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG 305 (1187)
T COG1110 230 GFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVG 305 (1187)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccC
Confidence 22221 1111111 113346899999964432 234444432 2222
Q ss_pred cchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCc---HHHHHHHHHHhcC-CCcEEEecCCCChhHHH
Q 047890 666 NVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCST---KRLCDQLARSIGR-NFGAIAIHGDKSQGERD 741 (1134)
Q Consensus 666 ~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT---~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~ 741 (1134)
.... ...++...+... +....+.++++.+. .-.|||++. ++.+++|++.|+. ++.+..+|+. ..
T Consensus 306 ~~~~--~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~ 373 (1187)
T COG1110 306 SGGE--GLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KE 373 (1187)
T ss_pred ccch--hhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----ch
Confidence 2111 122233332222 44555666776654 468999999 8999999999965 6889888873 26
Q ss_pred HHHHHHhcCCCCeeeec----ccceeccccCc-ceEEEeecCC
Q 047890 742 WVLNQFRSGKSPILVAT----DVAARGLDIKD-IRVVINYDFP 779 (1134)
Q Consensus 742 ~il~~FrsGe~~VLVAT----dvl~~GLDIp~-v~~VI~~d~P 779 (1134)
+.++.|..|+++|||.+ .++.+|||+|. +..+|+++.|
T Consensus 374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 68999999999999887 58999999986 6678888766
No 124
>COG4889 Predicted helicase [General function prediction only]
Probab=99.76 E-value=5.1e-18 Score=201.16 Aligned_cols=318 Identities=20% Similarity=0.227 Sum_probs=185.4
Q ss_pred CCCCCHHHHHHHHHHHcC----CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 477 FSSPTPIQAQTWPIALQG----RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 477 f~~prpiQ~eaI~~il~g----rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
-++|+|||..|+..++++ ...=|++.+|+|||++.|-.+-.+ . ..++|+|||+.+|..|..+++..-
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEal-a--------~~~iL~LvPSIsLLsQTlrew~~~ 229 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEAL-A--------AARILFLVPSISLLSQTLREWTAQ 229 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHH-h--------hhheEeecchHHHHHHHHHHHhhc
Confidence 357999999999999976 233444569999999976543332 2 258999999999999988887654
Q ss_pred ccCCCCceEEecCCCCCc--------------------hhHHh-----hcCCCcEEEeChHHHHHHHHhcccCCCCeEEE
Q 047890 553 GRSSRLSCTCLYGGAPKG--------------------PQLRE-----LDQGADIVVATPGRLNDILEMKKIDFGQVSLL 607 (1134)
Q Consensus 553 ~~~~~i~v~~l~GG~~~~--------------------~~l~~-----l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lV 607 (1134)
. ...+....++++.... ..+.. -..+--||++|++.|..+-+....-+..+++|
T Consensus 230 ~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDli 308 (1518)
T COG4889 230 K-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLI 308 (1518)
T ss_pred c-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEE
Confidence 2 2234444444432111 00111 11235699999999988888888888999999
Q ss_pred EEcchhhhhccCchHHHHHHHHhC-----CCCceEEEEeccCc---hhHHHH----------------------------
Q 047890 608 VLDEADRMLDMGFEPQIRKIVNEM-----PPHRQTLMYTATWP---KDVRKI---------------------------- 651 (1134)
Q Consensus 608 VIDEAHrll~~gf~~~i~~IL~~l-----~~~~qiLllSATl~---~~v~~l---------------------------- 651 (1134)
||||||+.....+...-...+..+ -+....|.||||.. +..+.-
T Consensus 309 icDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~Fge 388 (1518)
T COG4889 309 ICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGE 388 (1518)
T ss_pred EecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHH
Confidence 999999854322111111111110 11234688899832 111111
Q ss_pred --HHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHH---HHHh-----------------cCCEEEEEe
Q 047890 652 --ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL---RAQE-----------------RGSRVIIFC 709 (1134)
Q Consensus 652 --~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ll---k~~~-----------------~~~kvLVF~ 709 (1134)
.+.+|.++..+.+.. ++......+.....-....-+.+....|+ ..+. .-.++|-||
T Consensus 389 Av~rdlLTDYKVmvlaV-d~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~ 467 (1518)
T COG4889 389 AVERDLLTDYKVMVLAV-DKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFA 467 (1518)
T ss_pred HHHhhhhccceEEEEEe-chhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHH
Confidence 112222222221111 11111111111100000000111111111 1110 012467788
Q ss_pred CcHHHHHHHHHHh-----------cC---CCc--EEEecCCCChhHHHHHHH---HHhcCCCCeeeecccceeccccCcc
Q 047890 710 STKRLCDQLARSI-----------GR---NFG--AIAIHGDKSQGERDWVLN---QFRSGKSPILVATDVAARGLDIKDI 770 (1134)
Q Consensus 710 nT~~~ae~La~~L-----------~~---~~~--v~~LhG~ms~~eR~~il~---~FrsGe~~VLVATdvl~~GLDIp~v 770 (1134)
.++++...+++.+ .+ ++. +..+.|.|.-.+|.+.++ .|...+++||-....+++|||+|.+
T Consensus 468 k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaL 547 (1518)
T COG4889 468 KDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPAL 547 (1518)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCcccc
Confidence 8776655554433 22 233 445568888888866554 3456789999999999999999999
Q ss_pred eEEEeecCCCChhhHHHhhhccCcCC-CcceeEEEe
Q 047890 771 RVVINYDFPNGVEDYVHRIGRTGRAG-ATGVAHTFF 805 (1134)
Q Consensus 771 ~~VI~~d~P~s~~~yiQRiGRagR~G-qkG~~ii~~ 805 (1134)
+.||+|++-.+..+.+|.+||+.|.. .+...++++
T Consensus 548 DsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 548 DSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred ceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 99999999999999999999999954 233444443
No 125
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.76 E-value=2.9e-17 Score=194.04 Aligned_cols=304 Identities=19% Similarity=0.282 Sum_probs=193.0
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH-HhccCCCCceEE
Q 047890 484 QAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN-KFGRSSRLSCTC 562 (1134)
Q Consensus 484 Q~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~-kl~~~~~i~v~~ 562 (1134)
=.+.+..+..++-+||+++||||||.. +| .+|...... ...++.|.-|.|.-|..+++.+. +.+...+-.|..
T Consensus 56 r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~~--~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 56 RDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGFA--SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcccc--cCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 345566777778899999999999976 22 333322111 22347778888766655555443 233333323322
Q ss_pred ecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh-hhccC-chHHHHHHHHhCCCCceEEEE
Q 047890 563 LYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR-MLDMG-FEPQIRKIVNEMPPHRQTLMY 640 (1134)
Q Consensus 563 l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr-ll~~g-f~~~i~~IL~~l~~~~qiLll 640 (1134)
.+-=. ........|.+.|.+.|+..+.... .|.++++|||||||. -+..+ +...+++++.. .+..++|++
T Consensus 130 ~IRFe------d~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIim 201 (674)
T KOG0922|consen 130 TIRFE------DSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLIIM 201 (674)
T ss_pred EEEec------ccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEEE
Confidence 21100 0112236799999999988664333 478999999999995 11111 12233444433 345679999
Q ss_pred eccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHH-HHHHHHHHHHH--hcCCEEEEEeCcHHHHHH
Q 047890 641 TATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEK-ERRLQQILRAQ--ERGSRVIIFCSTKRLCDQ 717 (1134)
Q Consensus 641 SATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek-~~~L~~llk~~--~~~~kvLVF~nT~~~ae~ 717 (1134)
|||+.. +++. .|+.....+.+... ...+...+...+..+- ...+..+++-. +...-+|||....++++.
T Consensus 202 SATlda--~kfS-~yF~~a~i~~i~GR-----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 202 SATLDA--EKFS-EYFNNAPILTIPGR-----TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred eeeecH--HHHH-HHhcCCceEeecCC-----CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 999863 3333 34443333333221 1112122221122221 22223322211 345689999999999999
Q ss_pred HHHHhcCC-------C--cEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecC----------
Q 047890 718 LARSIGRN-------F--GAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDF---------- 778 (1134)
Q Consensus 718 La~~L~~~-------~--~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~---------- 778 (1134)
+++.|.+. . -+..+|+.++.++..+++..-..|..+|+|+|++++..|.|+++..||.-++
T Consensus 274 ~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 99888541 1 2467999999999999988888899999999999999999999999997432
Q ss_pred --------CCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 779 --------PNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 779 --------P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
|-|-+.-.||.||+||.+ .|+|+-+|++.+.
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 346678889999999985 7999999987765
No 126
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.74 E-value=7.2e-17 Score=199.79 Aligned_cols=314 Identities=16% Similarity=0.212 Sum_probs=208.8
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH-hccCCCCc
Q 047890 481 TPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK-FGRSSRLS 559 (1134)
Q Consensus 481 rpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k-l~~~~~i~ 559 (1134)
...+++.|..+.++..+|+.++||+|||...---++..... .. ..+++|+--|.|--|.-+++++.. .+...+-.
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~---~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIE---SG-AACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHh---cC-CCCeEEecCCchHHHHHHHHHHHHHhccccCCe
Confidence 45677778888888999999999999998744333433221 11 567788888987666666665543 22222222
Q ss_pred eEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh-hhccCchHHHHHHHHhCCCCceEE
Q 047890 560 CTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR-MLDMGFEPQIRKIVNEMPPHRQTL 638 (1134)
Q Consensus 560 v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr-ll~~gf~~~i~~IL~~l~~~~qiL 638 (1134)
|..-+.-.. .......+++||.+.|+..+.. .-.+..+..||+||+|. -.+.+|.-.+.+.+-...++.++|
T Consensus 251 VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvI 323 (924)
T KOG0920|consen 251 VGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVI 323 (924)
T ss_pred eeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEE
Confidence 222221111 1122367999999999998865 55678999999999995 334445555555555556889999
Q ss_pred EEeccCchhHHHHHHhhccCCeeeeeccc---------hhh-hcc----cceeeE------------EEecchhHHHHHH
Q 047890 639 MYTATWPKDVRKIASDLLVNPVQVNIGNV---------DEL-AAN----KAITQH------------VEVVPQMEKERRL 692 (1134)
Q Consensus 639 llSATl~~~v~~l~~~~l~~~~~i~i~~~---------d~l-~~~----~~i~~~------------~~~v~~~ek~~~L 692 (1134)
+||||+..+ ....|+.....+.+... +++ ... ...... +.+.....+...+
T Consensus 324 LMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li 400 (924)
T KOG0920|consen 324 LMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLI 400 (924)
T ss_pred EeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHH
Confidence 999997632 22233222221211100 000 000 000000 1111222334445
Q ss_pred HHHHHHH---hcCCEEEEEeCcHHHHHHHHHHhcC--------CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccc
Q 047890 693 QQILRAQ---ERGSRVIIFCSTKRLCDQLARSIGR--------NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVA 761 (1134)
Q Consensus 693 ~~llk~~---~~~~kvLVF~nT~~~ae~La~~L~~--------~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl 761 (1134)
..++..+ ...+.+|||.....++..+++.|.. .+.+..+|+.|+..+...|.+..-.|..+||++|+++
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIA 480 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIA 480 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhH
Confidence 5555443 3457899999999999999998842 2567889999999999999999999999999999999
Q ss_pred eeccccCcceEEEee--------cCCC----------ChhhHHHhhhccCcCCCcceeEEEecccc
Q 047890 762 ARGLDIKDIRVVINY--------DFPN----------GVEDYVHRIGRTGRAGATGVAHTFFSEQD 809 (1134)
Q Consensus 762 ~~GLDIp~v~~VI~~--------d~P~----------s~~~yiQRiGRagR~GqkG~~ii~~~~~d 809 (1134)
+..|.|++|-.||.. |+-. +..+-.||.||+||. ..|.||-+|+...
T Consensus 481 ETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 481 ETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 999999999999973 4322 456678999999998 7899999998654
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=3.5e-16 Score=193.17 Aligned_cols=314 Identities=19% Similarity=0.179 Sum_probs=206.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.++++|.-+--.+. ..-|+...||.|||+++.++++.... .+..|.||+||..||.+-++++..+...+++
T Consensus 82 ~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al-------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 82 RHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNAL-------SGKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred CcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHH-------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 47788877654444 55699999999999999999876554 5778999999999999999999999999999
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhcc------cCCCCeEEEEEcchhhhhcc-C-----------
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMKK------IDFGQVSLLVLDEADRMLDM-G----------- 619 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~~------l~l~~l~lVVIDEAHrll~~-g----------- 619 (1134)
.+.++.++....+....+. ++|+++|...| +|+|..+. .....+.++||||+|.++=. .
T Consensus 153 ~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~ 230 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAE 230 (913)
T ss_pred EEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCc
Confidence 9999988766554444333 89999998876 55554331 12478899999999975310 0
Q ss_pred ----chHHHHHHHHhC----------------------------------------------------------------
Q 047890 620 ----FEPQIRKIVNEM---------------------------------------------------------------- 631 (1134)
Q Consensus 620 ----f~~~i~~IL~~l---------------------------------------------------------------- 631 (1134)
+...+..++..+
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i 310 (913)
T PRK13103 231 DSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHV 310 (913)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHH
Confidence 000000000000
Q ss_pred ----------CCC-------------------------------------------------------------ceEEEE
Q 047890 632 ----------PPH-------------------------------------------------------------RQTLMY 640 (1134)
Q Consensus 632 ----------~~~-------------------------------------------------------------~qiLll 640 (1134)
..+ ..+.+|
T Consensus 311 ~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGM 390 (913)
T PRK13103 311 YAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGM 390 (913)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccC
Confidence 000 013344
Q ss_pred eccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHH-HHHHHHHHHhcCCEEEEEeCcHHHHHHHH
Q 047890 641 TATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKER-RLQQILRAQERGSRVIIFCSTKRLCDQLA 719 (1134)
Q Consensus 641 SATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~-~L~~llk~~~~~~kvLVF~nT~~~ae~La 719 (1134)
|+|...+..++..-|-.+.+.| ...... ..+.....+ .....+|.. ++.++.+....+..|||.|.|++..+.|+
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~I--PTnkP~-~R~D~~d~v-y~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 391 TGTADTEAFEFRQIYGLDVVVI--PPNKPL-ARKDFNDLV-YLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred CCCCHHHHHHHHHHhCCCEEEC--CCCCCc-ccccCCCeE-EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 4444333333332222221111 111000 011111122 233344443 44555556678999999999999999999
Q ss_pred HHhcC-CCcEEEecCCCChhHHHHHHHHHhcC-CCCeeeecccceeccccC-----------------------------
Q 047890 720 RSIGR-NFGAIAIHGDKSQGERDWVLNQFRSG-KSPILVATDVAARGLDIK----------------------------- 768 (1134)
Q Consensus 720 ~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsG-e~~VLVATdvl~~GLDIp----------------------------- 768 (1134)
..|.+ ++...+|+......+ .+|+. ..| .-.|.|||++++||.||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 99964 566666666543222 23333 344 446999999999999994
Q ss_pred --------cceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 769 --------DIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 769 --------~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
+=-+||-...+.|..-..|..||+||-|.+|.+..|++-+|.
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 112688888999999999999999999999999999987764
No 128
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=1.3e-16 Score=187.32 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHH--hcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhc--CCCCee-eecccc
Q 047890 688 KERRLQQILRAQ--ERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRS--GKSPIL-VATDVA 761 (1134)
Q Consensus 688 k~~~L~~llk~~--~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~Frs--Ge~~VL-VATdvl 761 (1134)
|...+.++++.+ ....+++|...-...+..+...|.. ++....+||....++|.++++.|+. |..+|| |+-.+.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 444444444444 3467888888888888888888865 5778899999999999999999983 445565 555899
Q ss_pred eeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 762 ARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 762 ~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
+.|||+.+.+|+|++|+-|++..-.|+..|+.|.|++..++|+-..-..
T Consensus 810 GVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred cceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 9999999999999999999999999999999999999988886544333
No 129
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=7.5e-17 Score=195.50 Aligned_cols=330 Identities=17% Similarity=0.222 Sum_probs=215.6
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWPIALQ----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
++..||...|.++.+ +-+.|++++||.|||+.-+..+..+++. +. .....|||||+-.|. .|..+|.+|..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~-K~---~~GP~LvivPlstL~-NW~~Ef~kWaP 468 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEH-KQ---MQGPFLIIVPLSTLV-NWSSEFPKWAP 468 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHH-cc---cCCCeEEeccccccC-Cchhhcccccc
Confidence 699999999999875 3468999999999999877666555543 22 233578899986664 58999999965
Q ss_pred CCCCceEEecCCCCCchhHH--hhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCC
Q 047890 555 SSRLSCTCLYGGAPKGPQLR--ELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~--~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~ 632 (1134)
. |.++...|.......+. .....++|+++|++.++. ....+..-++.++||||.|+|.+.. ..+...++..-
T Consensus 469 S--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y 542 (1157)
T KOG0386|consen 469 S--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHY 542 (1157)
T ss_pred c--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhccc
Confidence 4 33333333222211111 122458999999988765 2233344467899999999987642 22222222211
Q ss_pred CCceEEEEeccC-------------------------------------------chh--------HHHHHHhhcc----
Q 047890 633 PHRQTLMYTATW-------------------------------------------PKD--------VRKIASDLLV---- 657 (1134)
Q Consensus 633 ~~~qiLllSATl-------------------------------------------~~~--------v~~l~~~~l~---- 657 (1134)
.....+++|+|. +.+ +-++++-++.
T Consensus 543 ~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlK 622 (1157)
T KOG0386|consen 543 RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLK 622 (1157)
T ss_pred cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhh
Confidence 222345555551 000 0011111100
Q ss_pred --------CCe-----------------------eeeecc----------chhhhcccceeeEEEec-------------
Q 047890 658 --------NPV-----------------------QVNIGN----------VDELAANKAITQHVEVV------------- 683 (1134)
Q Consensus 658 --------~~~-----------------------~i~i~~----------~d~l~~~~~i~~~~~~v------------- 683 (1134)
+.+ .+.+.. .+.+....++|.|..+.
T Consensus 623 keVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 623 KEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 000 000000 00111122334333222
Q ss_pred ----chhHHHHHHHHHHHHHh-cCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCC---Ce
Q 047890 684 ----PQMEKERRLQQILRAQE-RGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKS---PI 754 (1134)
Q Consensus 684 ----~~~ek~~~L~~llk~~~-~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~---~V 754 (1134)
...-|.+.|..+|-.+. .+.+||+||.-....+.|..+|. +.+....++|....++|...++.|+..+. .+
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 22235566666665554 57899999999999999999984 57889999999999999999999997654 47
Q ss_pred eeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHH
Q 047890 755 LVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKV 819 (1134)
Q Consensus 755 LVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~ 819 (1134)
|++|-+.+.|||+..++.||.||..|++..+.|+-.|+.|.|++..+-++.......+.+.+++.
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999888887766555554444433
No 130
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.70 E-value=4.3e-16 Score=187.74 Aligned_cols=158 Identities=17% Similarity=0.187 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC-C
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS-R 557 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~-~ 557 (1134)
.|-.||.+.+..+-.+..++|+|||-+|||.+....+-..|+.. ....||+++||++|+.|+...+....... -
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes-----D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES-----DSDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc-----CCCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 38899999999999999999999999999998877777777643 44589999999999999888776544221 1
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh---cccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCC
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM---KKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH 634 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~---~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~ 634 (1134)
.....+.|....+..+. .-.|.|+|+-|+.|..+|.. ......++.+||+||+|.+....-...+..++..+ .
T Consensus 586 ~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~ 661 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--P 661 (1330)
T ss_pred ccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--C
Confidence 22233333332222221 22489999999999998866 33446789999999999988766555556666554 3
Q ss_pred ceEEEEeccCc
Q 047890 635 RQTLMYTATWP 645 (1134)
Q Consensus 635 ~qiLllSATl~ 645 (1134)
+.+|.+|||+.
T Consensus 662 CP~L~LSATig 672 (1330)
T KOG0949|consen 662 CPFLVLSATIG 672 (1330)
T ss_pred CCeeEEecccC
Confidence 45899999953
No 131
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=3.3e-15 Score=189.33 Aligned_cols=120 Identities=14% Similarity=0.212 Sum_probs=83.9
Q ss_pred hcCCEEEEEeCcHHHHHHHHHHhcCC-CcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccC--cceEEEee
Q 047890 700 ERGSRVIIFCSTKRLCDQLARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK--DIRVVINY 776 (1134)
Q Consensus 700 ~~~~kvLVF~nT~~~ae~La~~L~~~-~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp--~v~~VI~~ 776 (1134)
..++++||++++.+..+.+++.|... +.+ ...|... .+.+++++|++++..||++|+.+-+|||++ +...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 45689999999999999999888543 333 3334222 356789999998889999999999999996 35556666
Q ss_pred cCCC----C--------------------------hhhHHHhhhccCcCCCcceeEEEeccc--chHHHHHHHHHHHh
Q 047890 777 DFPN----G--------------------------VEDYVHRIGRTGRAGATGVAHTFFSEQ--DSKYAADLVKVLEG 822 (1134)
Q Consensus 777 d~P~----s--------------------------~~~yiQRiGRagR~GqkG~~ii~~~~~--d~~~~~~l~k~L~~ 822 (1134)
.+|. + ...+.|.+||.-|.....-++++++.. ...+-..+++.|-.
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLAE 799 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCCC
Confidence 6552 1 123459999999987644455666554 23445566666643
No 132
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=9.2e-16 Score=179.20 Aligned_cols=308 Identities=17% Similarity=0.253 Sum_probs=197.5
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH-hccCCCC
Q 047890 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK-FGRSSRL 558 (1134)
Q Consensus 480 prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k-l~~~~~i 558 (1134)
.+++-.+.|.++.++.-+||.++||||||.. +|- +|....-. ..+.++-+.-|.|.-|.-+...+.+ .+..++-
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQ--yL~EaGyt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQ--YLYEAGYT-KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccH--HHHhcccc-cCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 4667778888888889999999999999975 342 33221111 2344577778988877776655443 3322222
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh-hhccCchHHHHHHHHhCCCCceE
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR-MLDMGFEPQIRKIVNEMPPHRQT 637 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr-ll~~gf~~~i~~IL~~l~~~~qi 637 (1134)
.|..-+- .+ .......-|-+.|.+.|+.-+. ...+|..+++|||||||. .+..+..-.+.+-+..+.+...+
T Consensus 341 eVGYsIR----FE--dcTSekTvlKYMTDGmLlREfL-~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKl 413 (902)
T KOG0923|consen 341 EVGYSIR----FE--DCTSEKTVLKYMTDGMLLREFL-SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKL 413 (902)
T ss_pred ccceEEE----ec--cccCcceeeeeecchhHHHHHh-ccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceE
Confidence 2211110 00 0111235688999998877552 345678999999999995 22222111122223345678889
Q ss_pred EEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHH-HHHHHHH--HhcCCEEEEEeCcHHH
Q 047890 638 LMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERR-LQQILRA--QERGSRVIIFCSTKRL 714 (1134)
Q Consensus 638 LllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~-L~~llk~--~~~~~kvLVF~nT~~~ 714 (1134)
|+.|||+.. +++.. ++.+.-.+.+... ...+..++...++.+-.++ +..++.- ....+-+|||..-.++
T Consensus 414 lIsSAT~DA--ekFS~-fFDdapIF~iPGR-----RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 414 LISSATMDA--EKFSA-FFDDAPIFRIPGR-----RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred EeeccccCH--HHHHH-hccCCcEEeccCc-----ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 999999754 33333 3333222222111 1123334444555544433 2233221 1234679999988777
Q ss_pred HHHHHHHhc-------C---CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecC------
Q 047890 715 CDQLARSIG-------R---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDF------ 778 (1134)
Q Consensus 715 ae~La~~L~-------~---~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~------ 778 (1134)
++...+.|. . .+-++.||+.++.....+|++---.|..+|++||++++..|.|++|..||.-++
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 666555542 2 345788999999999999998888999999999999999999999999996332
Q ss_pred ------------CCChhhHHHhhhccCcCCCcceeEEEeccc
Q 047890 779 ------------PNGVEDYVHRIGRTGRAGATGVAHTFFSEQ 808 (1134)
Q Consensus 779 ------------P~s~~~yiQRiGRagR~GqkG~~ii~~~~~ 808 (1134)
|-+.++-.||.||+||.| +|+|+-+|+..
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 345677789999999996 79999998743
No 133
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.68 E-value=2.6e-15 Score=170.25 Aligned_cols=116 Identities=17% Similarity=0.277 Sum_probs=94.8
Q ss_pred CEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcC-CCCe-eeecccceeccccCcceEEEeecCC
Q 047890 703 SRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSG-KSPI-LVATDVAARGLDIKDIRVVINYDFP 779 (1134)
Q Consensus 703 ~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsG-e~~V-LVATdvl~~GLDIp~v~~VI~~d~P 779 (1134)
-|.|||......++.+.-.|.+ ++.++.|.|+|+...|+.+++.|++. ++.| ||+-.+.+.-||+..+..|+++|+-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4788999999999999888865 79999999999999999999999864 5665 4555999999999999999999999
Q ss_pred CChhhHHHhhhccCcCCCcc--eeEEEecccchHHHHHHHHHH
Q 047890 780 NGVEDYVHRIGRTGRAGATG--VAHTFFSEQDSKYAADLVKVL 820 (1134)
Q Consensus 780 ~s~~~yiQRiGRagR~GqkG--~~ii~~~~~d~~~~~~l~k~L 820 (1134)
|+++--+|...|+.|.|+.. .++.|+.++ .+..+|++.-
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn--siE~kIieLQ 759 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN--SIEEKIIELQ 759 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhc--cHHHHHHHHH
Confidence 99999999999999999755 444455443 2334454443
No 134
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1.4e-15 Score=177.75 Aligned_cols=303 Identities=18% Similarity=0.233 Sum_probs=188.4
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH-hccCCCC
Q 047890 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK-FGRSSRL 558 (1134)
Q Consensus 480 prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k-l~~~~~i 558 (1134)
....+.+.+..|.+++-+||+++||||||... + .+|... ......-+-+.-|.|.-|.-+++.+.. +...++-
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl--~--QyL~ed--GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQL--A--QYLYED--GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhh--H--HHHHhc--ccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 45667788888888899999999999999862 2 222211 111233555666888777776666543 3222222
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh-hhccCc-hHHHHHHHHhCCCCce
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR-MLDMGF-EPQIRKIVNEMPPHRQ 636 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr-ll~~gf-~~~i~~IL~~l~~~~q 636 (1134)
.+...+ ..+. .......|-+.|.+.|+.-.. ..-.|.++++||+||||. -++.+. ...++.++. -..+..
T Consensus 431 ~VGYsI----RFEd--vT~~~T~IkymTDGiLLrEsL-~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlK 502 (1042)
T KOG0924|consen 431 TVGYSI----RFED--VTSEDTKIKYMTDGILLRESL-KDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLK 502 (1042)
T ss_pred ccceEE----Eeee--cCCCceeEEEeccchHHHHHh-hhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccce
Confidence 221111 0000 011235788999998876432 233467899999999995 233221 122233333 345778
Q ss_pred EEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHH------hcCCEEEEEeC
Q 047890 637 TLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQ------ERGSRVIIFCS 710 (1134)
Q Consensus 637 iLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~------~~~~kvLVF~n 710 (1134)
+|.+|||+. ..++...+ .+.-.++|.... ..+...+.. ....+.+...++.. ...+-+|||..
T Consensus 503 liVtSATm~--a~kf~nfF-gn~p~f~IpGRT-----yPV~~~~~k---~p~eDYVeaavkq~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924|consen 503 LIVTSATMD--AQKFSNFF-GNCPQFTIPGRT-----YPVEIMYTK---TPVEDYVEAAVKQAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred EEEeecccc--HHHHHHHh-CCCceeeecCCc-----cceEEEecc---CchHHHHHHHHhhheEeeccCCCCCEEEecC
Confidence 999999975 34444433 332233332211 011111111 11223333333322 13367999988
Q ss_pred cHHHHHHH----HHHhc-------CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecC-
Q 047890 711 TKRLCDQL----ARSIG-------RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDF- 778 (1134)
Q Consensus 711 T~~~ae~L----a~~L~-------~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~- 778 (1134)
-.+.++.. .+.|. .++.++.|.+.++.....+|+.....|..++||||++++..|.|+++.+||..++
T Consensus 572 GqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCce
Confidence 76554444 44432 1467889999999999999988888899999999999999999999999997542
Q ss_pred -----------------CCChhhHHHhhhccCcCCCcceeEEEeccc
Q 047890 779 -----------------PNGVEDYVHRIGRTGRAGATGVAHTFFSEQ 808 (1134)
Q Consensus 779 -----------------P~s~~~yiQRiGRagR~GqkG~~ii~~~~~ 808 (1134)
|-|-++-.||.||+||.| .|+||-+|++.
T Consensus 652 K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 652 KLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 446677789999999995 79999999863
No 135
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.67 E-value=7.3e-16 Score=184.22 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHh-cCCEEEEEeCcHHHHHHHHHHhcC-----------------------CCcEEEecCCCChhHHHHHH
Q 047890 689 ERRLQQILRAQE-RGSRVIIFCSTKRLCDQLARSIGR-----------------------NFGAIAIHGDKSQGERDWVL 744 (1134)
Q Consensus 689 ~~~L~~llk~~~-~~~kvLVF~nT~~~ae~La~~L~~-----------------------~~~v~~LhG~ms~~eR~~il 744 (1134)
..+|.+||+.+. -+.++|||..+...++.|..+|.. +.....|.|..+..+|..+.
T Consensus 1128 miLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1128 MILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred eehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 345677776554 589999999999888888877731 12356799999999999999
Q ss_pred HHHhcCC----CCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecc
Q 047890 745 NQFRSGK----SPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSE 807 (1134)
Q Consensus 745 ~~FrsGe----~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~ 807 (1134)
+.|++-. .-+||+|.+.+.|||+-.++.||+||..|++.-.+|.|=|++|.|+...||+|-.-
T Consensus 1208 ~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1208 EEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred HHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhh
Confidence 9999642 23799999999999999999999999999999999999999999999999998543
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=8.5e-15 Score=179.27 Aligned_cols=314 Identities=20% Similarity=0.210 Sum_probs=205.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|++.|.-+.-.+..| .|....||-|||+++.+|++.... .+..|-||+.+.-||..=.+++..+...+++
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL-------~GkgVhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL-------TGKGVIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh-------cCCceEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 5888888887666555 489999999999999998865433 5678899999999999988888888888899
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhcc------cCCCCeEEEEEcchhhhhcc-C-----------
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMKK------IDFGQVSLLVLDEADRMLDM-G----------- 619 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~~------l~l~~l~lVVIDEAHrll~~-g----------- 619 (1134)
.|.++..+.........+ .|+|+++|...| +++|..+. .....+.+.||||+|.++=. .
T Consensus 149 svG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~ 226 (925)
T PRK12903 149 SVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQS 226 (925)
T ss_pred ceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCc
Confidence 999888766554444333 589999998765 55654332 23567889999999974310 0
Q ss_pred ----chHHHHHHHHhCCC--------------------------------------------------------------
Q 047890 620 ----FEPQIRKIVNEMPP-------------------------------------------------------------- 633 (1134)
Q Consensus 620 ----f~~~i~~IL~~l~~-------------------------------------------------------------- 633 (1134)
+...+..++..+..
T Consensus 227 ~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~ 306 (925)
T PRK12903 227 NDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVR 306 (925)
T ss_pred cchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 00000011110000
Q ss_pred C------------------------------------------------------ceEEEEeccCchhHHHHHHhhccCC
Q 047890 634 H------------------------------------------------------RQTLMYTATWPKDVRKIASDLLVNP 659 (1134)
Q Consensus 634 ~------------------------------------------------------~qiLllSATl~~~v~~l~~~~l~~~ 659 (1134)
+ ..+.+||+|...+..++...|-.+.
T Consensus 307 dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~V 386 (925)
T PRK12903 307 DGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRV 386 (925)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCE
Confidence 0 0234444444333333333222221
Q ss_pred eeeeeccchhhhcccceeeEEEecchhHHHHH-HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCCh
Q 047890 660 VQVNIGNVDELAANKAITQHVEVVPQMEKERR-LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQ 737 (1134)
Q Consensus 660 ~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~-L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~ 737 (1134)
+. +...... ....... .......+|... +.++.+....+.+|||.|.+++..+.|+..|.+ ++...+|+.....
T Consensus 387 v~--IPTnkP~-~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e 462 (925)
T PRK12903 387 NV--VPTNKPV-IRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA 462 (925)
T ss_pred EE--CCCCCCe-eeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh
Confidence 11 1110000 0000111 122233444444 445555667889999999999999999999965 6888888875432
Q ss_pred hHHHHHHHHHhcC-CCCeeeecccceeccccCcce--------EEEeecCCCChhhHHHhhhccCcCCCcceeEEEeccc
Q 047890 738 GERDWVLNQFRSG-KSPILVATDVAARGLDIKDIR--------VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQ 808 (1134)
Q Consensus 738 ~eR~~il~~FrsG-e~~VLVATdvl~~GLDIp~v~--------~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~ 808 (1134)
.+ ..|+. ..| .-.|.|||++++||.||.--. +||....+.|..-..|..||+||-|.+|.+..|++-+
T Consensus 463 ~E-A~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 463 RE-AEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred hH-HHHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 22 22332 345 456999999999999995322 7999999999999999999999999999999998876
Q ss_pred ch
Q 047890 809 DS 810 (1134)
Q Consensus 809 d~ 810 (1134)
|.
T Consensus 540 D~ 541 (925)
T PRK12903 540 DQ 541 (925)
T ss_pred hH
Confidence 63
No 137
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.66 E-value=2e-15 Score=176.46 Aligned_cols=145 Identities=17% Similarity=0.293 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHh-cCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCC-Ceeeecccceec
Q 047890 688 KERRLQQILRAQE-RGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKS-PILVATDVAARG 764 (1134)
Q Consensus 688 k~~~L~~llk~~~-~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~-~VLVATdvl~~G 764 (1134)
|...|.++|..++ .+.++|+|+.-.+.++.+.++|. +.|..+.|.|.....+|.+++.+|...++ .+|++|.+.+.|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 3445677776664 46799999999999999999985 58999999999999999999999997655 468999999999
Q ss_pred cccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhh
Q 047890 765 LDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALR 837 (1134)
Q Consensus 765 LDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r 837 (1134)
||+..++.||+||..|++....|++.|+.|.|+...+.+|-.-....+.+++++.... ...+..+...
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~q-----K~~vQq~Vm~ 1176 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQ-----KDEVQQMVMH 1176 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhh-----HHHHHHHHHc
Confidence 9999999999999999999999999999999998776666554444444445443332 3456666655
No 138
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.64 E-value=1e-14 Score=187.28 Aligned_cols=338 Identities=20% Similarity=0.230 Sum_probs=220.0
Q ss_pred CCCCCHHHHHHHHHHHc-----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 477 FSSPTPIQAQTWPIALQ-----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 477 f~~prpiQ~eaI~~il~-----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
+..++++|.+.+.++.. ..+.|+++++|.|||+..+..+...+.... ...+.+||+||+ +++.+|.+++.+
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~---~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIK---VYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhccc---CCCCCeEEEecH-HHHHHHHHHHhh
Confidence 35689999999988662 578899999999999987766655332211 114589999997 899999999999
Q ss_pred hccCCCCceEEecCCCCC----chhHHhhcCC-----CcEEEeChHHHHHHH-HhcccCCCCeEEEEEcchhhhhccCch
Q 047890 552 FGRSSRLSCTCLYGGAPK----GPQLRELDQG-----ADIVVATPGRLNDIL-EMKKIDFGQVSLLVLDEADRMLDMGFE 621 (1134)
Q Consensus 552 l~~~~~i~v~~l~GG~~~----~~~l~~l~~~-----~dIIVaTPerL~~lL-~~~~l~l~~l~lVVIDEAHrll~~gf~ 621 (1134)
|...... +...+|.... ...+..+... .+|+++|++.|...+ ....+....++++|+||+|++.+....
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH
Confidence 9766443 4555554431 3344444332 789999999987743 222344557889999999997653211
Q ss_pred HHHHHHHHhCCCCceEEEEeccCc-hh--------------------------------------------------HHH
Q 047890 622 PQIRKIVNEMPPHRQTLMYTATWP-KD--------------------------------------------------VRK 650 (1134)
Q Consensus 622 ~~i~~IL~~l~~~~qiLllSATl~-~~--------------------------------------------------v~~ 650 (1134)
.. ..+..+.... .+++|.|.- .. +..
T Consensus 491 -~~-~~l~~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 491 -EG-KALQFLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred -HH-HHHHHHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 11 1111111111 234444410 00 000
Q ss_pred HHHhhcc----CC--ee------------ee----------------------------------------eccchhhhc
Q 047890 651 IASDLLV----NP--VQ------------VN----------------------------------------IGNVDELAA 672 (1134)
Q Consensus 651 l~~~~l~----~~--~~------------i~----------------------------------------i~~~d~l~~ 672 (1134)
++..++. .. +. +. +.....+..
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 0000000 00 00 00 000000000
Q ss_pred ccceeeEEEecchh------------------------------HHHHHHHHHH-H-HHhcCC--EEEEEeCcHHHHHHH
Q 047890 673 NKAITQHVEVVPQM------------------------------EKERRLQQIL-R-AQERGS--RVIIFCSTKRLCDQL 718 (1134)
Q Consensus 673 ~~~i~~~~~~v~~~------------------------------ek~~~L~~ll-k-~~~~~~--kvLVF~nT~~~ae~L 718 (1134)
...++.+...+... .|...+.+++ . ....+. ++|||+.....++.|
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 11122222222222 4556666666 2 334556 899999999999999
Q ss_pred HHHhcCC-CcEEEecCCCChhHHHHHHHHHhcC--CCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcC
Q 047890 719 ARSIGRN-FGAIAIHGDKSQGERDWVLNQFRSG--KSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRA 795 (1134)
Q Consensus 719 a~~L~~~-~~v~~LhG~ms~~eR~~il~~FrsG--e~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~ 795 (1134)
...|... +.++.++|.++.++|..+++.|+++ ...+|+++.+++.|||+..+++||+||+.|++....|++.|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 9999765 5899999999999999999999986 445677789999999999999999999999999999999999999
Q ss_pred CCcceeEEEecccchHHHHHHHHHHHh
Q 047890 796 GATGVAHTFFSEQDSKYAADLVKVLEG 822 (1134)
Q Consensus 796 GqkG~~ii~~~~~d~~~~~~l~k~L~~ 822 (1134)
|++..+.+|-......+.+++++..+.
T Consensus 808 gQ~~~v~v~r~i~~~tiEe~i~~~~~~ 834 (866)
T COG0553 808 GQKRPVKVYRLITRGTIEEKILELQEK 834 (866)
T ss_pred cCcceeEEEEeecCCcHHHHHHHHHHH
Confidence 999888887766655555555554443
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.63 E-value=1.4e-13 Score=177.50 Aligned_cols=121 Identities=16% Similarity=0.235 Sum_probs=88.3
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcCCCc---EEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcc--eEEEe
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGRNFG---AIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI--RVVIN 775 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~~~~---v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v--~~VI~ 775 (1134)
..+.+|||+++.+..+.+++.|..... ..++.-+++...|.+++++|++++-.||++|..+.+|||+++- .+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 456899999999999999999864321 2333334555678999999999888999999999999999874 67888
Q ss_pred ecCCCC------------------------------hhhHHHhhhccCcCCCcceeEEEeccc--chHHHHHHHHHHH
Q 047890 776 YDFPNG------------------------------VEDYVHRIGRTGRAGATGVAHTFFSEQ--DSKYAADLVKVLE 821 (1134)
Q Consensus 776 ~d~P~s------------------------------~~~yiQRiGRagR~GqkG~~ii~~~~~--d~~~~~~l~k~L~ 821 (1134)
..+|.. ...+.|.+||+-|..+..-++++++.. ...+-..+++.|-
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 776641 123358999999987665556666654 3444455666554
No 140
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.63 E-value=7.7e-15 Score=143.55 Aligned_cols=144 Identities=44% Similarity=0.600 Sum_probs=110.8
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
+++++.++||+|||.+++..+...+.. ....++||++|++.|+.|+.+.+.++... .+.+..+.+.........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-----LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEK 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHH
Confidence 468999999999999988887776543 23568999999999999999999988764 566666666655544444
Q ss_pred hhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccC
Q 047890 575 ELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 575 ~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl 644 (1134)
......+|+|+|++.+...+.........+++|||||+|.+....+...............+++++|||+
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4556789999999999888776655667889999999999887655544333344455677899999994
No 141
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.62 E-value=1.9e-14 Score=174.75 Aligned_cols=133 Identities=19% Similarity=0.319 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHh-cCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCC--Ceeeeccccee
Q 047890 688 KERRLQQILRAQE-RGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS--PILVATDVAAR 763 (1134)
Q Consensus 688 k~~~L~~llk~~~-~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~--~VLVATdvl~~ 763 (1134)
|...|..+|..++ .+.++|||+.-.+.++.|...|+- ++.++.|+|....++|..++++|+.... .+|++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 5555666666554 578999999999999999999964 6789999999999999999999997643 57899999999
Q ss_pred ccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHH
Q 047890 764 GLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVL 820 (1134)
Q Consensus 764 GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L 820 (1134)
|||+.+++.||+||..||+.-..|.-.|+.|.|+...+.||-.-.+..+.++|++.-
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 999999999999999999999999999999999998888887777777766666544
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.61 E-value=3.6e-15 Score=154.84 Aligned_cols=152 Identities=25% Similarity=0.234 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHHc-------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 479 SPTPIQAQTWPIALQ-------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~-------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
+|+++|.+|+..++. .+.+|+.++||+|||++++..+..+.. ++|||||+..|++||.+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----------KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----------EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----------ceeEecCHHHHHHHHHHHHHH
Confidence 489999999999984 588999999999999998765555432 899999999999999999977
Q ss_pred hccCCCCceEE-----------ecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc-----------ccCCCCeEEEEE
Q 047890 552 FGRSSRLSCTC-----------LYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK-----------KIDFGQVSLLVL 609 (1134)
Q Consensus 552 l~~~~~i~v~~-----------l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~-----------~l~l~~l~lVVI 609 (1134)
+.......... ..................+|+++|...|....... ......+++|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 65432111111 11111111222223456789999999998876432 123456789999
Q ss_pred cchhhhhccCchHHHHHHHHhCCCCceEEEEeccCc
Q 047890 610 DEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645 (1134)
Q Consensus 610 DEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~ 645 (1134)
||||++.... .+..++. .....+|+||||+.
T Consensus 153 DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred ehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 9999976532 1455555 45566999999964
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.61 E-value=8.4e-14 Score=171.70 Aligned_cols=126 Identities=23% Similarity=0.223 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCc
Q 047890 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLS 559 (1134)
Q Consensus 480 prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~ 559 (1134)
|++.|.-+.-.+ .+..|+.+.||.|||+++.+|++.... .+..|.||+++..||.+-++++..+...+++.
T Consensus 77 ~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL-------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLs 147 (870)
T CHL00122 77 HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL-------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLT 147 (870)
T ss_pred CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh-------cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCc
Confidence 788887775444 456799999999999999998864332 46789999999999999999999998889999
Q ss_pred eEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhcc------cCCCCeEEEEEcchhhhh
Q 047890 560 CTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMKK------IDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 560 v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~~------l~l~~l~lVVIDEAHrll 616 (1134)
|.++.++.+.......+ .|+|+++|...| +++|..+. .....+.++||||+|.++
T Consensus 148 vg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 148 VGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99988876665444433 489999998655 34443321 234668899999999743
No 144
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.5e-15 Score=175.24 Aligned_cols=300 Identities=20% Similarity=0.289 Sum_probs=169.4
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcC-CCCCCCEEEEEcccHHHHHHHH----HHHHHhccCCCCc
Q 047890 485 AQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN-NPRNGPTVLVLAPTRELATQIQ----DEANKFGRSSRLS 559 (1134)
Q Consensus 485 ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~-~~~~g~kvLVLvPTreLa~Q~~----~el~kl~~~~~i~ 559 (1134)
.+++..|-++.-+|||++||||||.. +|-+.+-.-... ......-+=|.-|.|.-|.-+. .++..++.. +.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~e--Vs 337 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSE--VS 337 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccc--ee
Confidence 34566667777899999999999975 343322111111 1112234556667765554444 444443322 22
Q ss_pred eEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHH-------hCC
Q 047890 560 CTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVN-------EMP 632 (1134)
Q Consensus 560 v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~-------~l~ 632 (1134)
..+-+.++ +.....|.++|.+.|+.-+. .++.|.+++.|||||||.-.- +...+.-+|. .+.
T Consensus 338 YqIRfd~t--------i~e~T~IkFMTDGVLLrEi~-~DflL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 338 YQIRFDGT--------IGEDTSIKFMTDGVLLREIE-NDFLLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEEEeccc--------cCCCceeEEecchHHHHHHH-HhHhhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHh
Confidence 22223222 22346899999999988775 456688999999999995211 1112222221 111
Q ss_pred ------CCceEEEEeccCchhHHHHHHh--hccC-CeeeeeccchhhhcccceeeEEEecchhH----HHHHHHHHHHHH
Q 047890 633 ------PHRQTLMYTATWPKDVRKIASD--LLVN-PVQVNIGNVDELAANKAITQHVEVVPQME----KERRLQQILRAQ 699 (1134)
Q Consensus 633 ------~~~qiLllSATl~~~v~~l~~~--~l~~-~~~i~i~~~d~l~~~~~i~~~~~~v~~~e----k~~~L~~llk~~ 699 (1134)
+...+|+||||+. +.++... ++.. +-.+.+. +....+..|+.-....+ .....+.|-+.+
T Consensus 407 ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVd-----ARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kL 479 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVD-----ARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKL 479 (1172)
T ss_pred hhhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeee-----cccCceEEEeccCCCchHHHHHHHHHHHHhhcC
Confidence 2457999999974 3333321 2111 1112221 11112333333222221 122223333332
Q ss_pred hcCCEEEEEeCcHHHHHHHHHHhcCCCcE---------------------------------------------------
Q 047890 700 ERGSRVIIFCSTKRLCDQLARSIGRNFGA--------------------------------------------------- 728 (1134)
Q Consensus 700 ~~~~kvLVF~nT~~~ae~La~~L~~~~~v--------------------------------------------------- 728 (1134)
..+.+|||+.-..+++.|++.|++.+++
T Consensus 480 -P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~ 558 (1172)
T KOG0926|consen 480 -PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVD 558 (1172)
T ss_pred -CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhc
Confidence 3467999999999988888888654321
Q ss_pred -------------------------------------------------EEecCCCChhHHHHHHHHHhcCCCCeeeecc
Q 047890 729 -------------------------------------------------IAIHGDKSQGERDWVLNQFRSGKSPILVATD 759 (1134)
Q Consensus 729 -------------------------------------------------~~LhG~ms~~eR~~il~~FrsGe~~VLVATd 759 (1134)
+.|.+-++.++..+|+..--.|..-++|||+
T Consensus 559 ~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTN 638 (1172)
T KOG0926|consen 559 SGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATN 638 (1172)
T ss_pred ccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEecc
Confidence 1111112223333333333456666899999
Q ss_pred cceeccccCcceEEEeecCC--------C----------ChhhHHHhhhccCcCCCcceeEEEeccc
Q 047890 760 VAARGLDIKDIRVVINYDFP--------N----------GVEDYVHRIGRTGRAGATGVAHTFFSEQ 808 (1134)
Q Consensus 760 vl~~GLDIp~v~~VI~~d~P--------~----------s~~~yiQRiGRagR~GqkG~~ii~~~~~ 808 (1134)
+++..|.||+|..||..+.- . |-++--||+||+||.| .|.||-+|+..
T Consensus 639 VAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 639 VAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred chhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 99999999999999975432 2 3345569999999996 69999988754
No 145
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.61 E-value=6.6e-15 Score=144.49 Aligned_cols=118 Identities=46% Similarity=0.795 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHh-cCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceec
Q 047890 687 EKERRLQQILRAQE-RGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARG 764 (1134)
Q Consensus 687 ek~~~L~~llk~~~-~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~G 764 (1134)
.+...+..++.... .+.++||||++...++.+++.|.+ ...+..+|++++..+|..+++.|+++...|||+|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 45566666665543 568999999999999999999965 6789999999999999999999999999999999999999
Q ss_pred cccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEE
Q 047890 765 LDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTF 804 (1134)
Q Consensus 765 LDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~ 804 (1134)
+|++.+++||+++.+++...|+|++||++|.|+.|.|++|
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998888764
No 146
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.60 E-value=5.5e-13 Score=163.07 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=77.1
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcCCCc-EEEecCCCChhHHHHHHHHHhcC----CCCeeeecccceecccc--------
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGRNFG-AIAIHGDKSQGERDWVLNQFRSG----KSPILVATDVAARGLDI-------- 767 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~~~~-v~~LhG~ms~~eR~~il~~FrsG----e~~VLVATdvl~~GLDI-------- 767 (1134)
.++.+||.+.+.+.++.+++.|...+. .+.+.|+.+ .+..++++|++. +..||++|+.+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 456899999999999999999876543 334455432 456688999874 78999999999999999
Q ss_pred --CcceEEEeecCCCCh-------------------------hhHHHhhhccCcCCCc--ceeEEEeccc
Q 047890 768 --KDIRVVINYDFPNGV-------------------------EDYVHRIGRTGRAGAT--GVAHTFFSEQ 808 (1134)
Q Consensus 768 --p~v~~VI~~d~P~s~-------------------------~~yiQRiGRagR~Gqk--G~~ii~~~~~ 808 (1134)
..+.+||+..+|..+ ..+.|-+||.-|.... --++++++..
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 347789887776321 2345889999998765 3344444443
No 147
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=8.9e-15 Score=167.77 Aligned_cols=321 Identities=13% Similarity=0.112 Sum_probs=212.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
--.....+|.++|..+-+|+++++.-.|-+||.+++.+.++.++... .....+++.|+.+|+.+..+.+.-....
T Consensus 283 ~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~V~~~~ 357 (1034)
T KOG4150|consen 283 TGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-----HATNSLLPSEMVEHLRNGSKGQVVHVEV 357 (1034)
T ss_pred cccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-----cccceecchhHHHHhhccCCceEEEEEe
Confidence 34457889999999999999999999999999999988777665432 2336788999999987754433221111
Q ss_pred C---CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccC----CCCeEEEEEcchhhhhccC---chHHHH
Q 047890 556 S---RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKID----FGQVSLLVLDEADRMLDMG---FEPQIR 625 (1134)
Q Consensus 556 ~---~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~----l~~l~lVVIDEAHrll~~g---f~~~i~ 625 (1134)
. .-.++..+.+....+...-...+..+|++.++.+...+..+.+. +-...++++||+|..+... ....++
T Consensus 358 I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R 437 (1034)
T KOG4150|consen 358 IKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLR 437 (1034)
T ss_pred hhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHH
Confidence 0 11123333344444444445667899999998876655433332 3345689999999755321 112233
Q ss_pred HHHHhC-----CCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEec------chhHHHHHHH-
Q 047890 626 KIVNEM-----PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVV------PQMEKERRLQ- 693 (1134)
Q Consensus 626 ~IL~~l-----~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v------~~~ek~~~L~- 693 (1134)
.++..+ ..+.+++-.+||+...++-...-+-.+.+ ++...+......+. .+.+. ...++...+.
T Consensus 438 ~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~--~Li~~DGSPs~~K~--~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 438 ALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSEL--ELVTIDGSPSSEKL--FVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcce--EEEEecCCCCccce--EEEeCCCCCCcchhhhhhHHHH
Confidence 333322 34678899999987666544433322222 22222222221111 11111 1112222222
Q ss_pred --HH-HHHHhcCCEEEEEeCcHHHHHHHHHHhcCC---------CcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccc
Q 047890 694 --QI-LRAQERGSRVIIFCSTKRLCDQLARSIGRN---------FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVA 761 (1134)
Q Consensus 694 --~l-lk~~~~~~kvLVF~nT~~~ae~La~~L~~~---------~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl 761 (1134)
.+ ...+..+-++|-||.+++.|+.|..+.++- -.+..+-|+....+|.+|..+.-.|+..-+|+|+++
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNAL 593 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchh
Confidence 22 223446789999999999999887654321 124557889999999999999999999999999999
Q ss_pred eeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEe
Q 047890 762 ARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFF 805 (1134)
Q Consensus 762 ~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~ 805 (1134)
+-||||..++.|+++++|-++.++.|..||+||.++...++.+.
T Consensus 594 ELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva 637 (1034)
T KOG4150|consen 594 ELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVA 637 (1034)
T ss_pred hhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEE
Confidence 99999999999999999999999999999999999887665544
No 148
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.58 E-value=2.1e-13 Score=163.60 Aligned_cols=304 Identities=16% Similarity=0.174 Sum_probs=170.4
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH-----HhccCCCCc
Q 047890 485 AQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN-----KFGRSSRLS 559 (1134)
Q Consensus 485 ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~-----kl~~~~~i~ 559 (1134)
.+++..+..++-+|+..+||+|||..+.--+|..+.+... .....+.+.-|++-.+.-+.+.+. ..+..++..
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~--g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~ 461 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN--GASFNAVVSQPRRISAISLAERVANERGEEVGETCGYN 461 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc--cccccceeccccccchHHHHHHHHHhhHHhhccccccc
Confidence 4455666677778899999999999887766665543222 123345566666555444444332 222222111
Q ss_pred eEEecCCCCCchhHHhh-cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc-CchHHHHHHHHhCCCCceE
Q 047890 560 CTCLYGGAPKGPQLREL-DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQT 637 (1134)
Q Consensus 560 v~~l~GG~~~~~~l~~l-~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~~qi 637 (1134)
+... ..+ ...-.|++||.+-|+..++... ..+.++|+||.|...-. .|.-.+..-+..+.....+
T Consensus 462 vRf~----------Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 462 VRFD----------SATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred cccc----------ccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhh
Confidence 1110 000 1113589999999988876544 46789999999963321 1222222211222233445
Q ss_pred EEEeccCchhHH--------------------HHHHhhccCCeeee------------eccchhhhcccceeeEEEecch
Q 047890 638 LMYTATWPKDVR--------------------KIASDLLVNPVQVN------------IGNVDELAANKAITQHVEVVPQ 685 (1134)
Q Consensus 638 LllSATl~~~v~--------------------~l~~~~l~~~~~i~------------i~~~d~l~~~~~i~~~~~~v~~ 685 (1134)
+++|||+..+.. .+..+.+..+.... ....++....+.- ..-.++++
T Consensus 529 ~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~-n~n~~~dd 607 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGR-NMNILCDP 607 (1282)
T ss_pred hhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccc-ccccccCh
Confidence 666666443321 11111111100000 0000000000000 00000000
Q ss_pred -------------hH---HHHHHHHHHHHHh---cCCEEEEEeCcHHHHHHHHHHhcC--------CCcEEEecCCCChh
Q 047890 686 -------------ME---KERRLQQILRAQE---RGSRVIIFCSTKRLCDQLARSIGR--------NFGAIAIHGDKSQG 738 (1134)
Q Consensus 686 -------------~e---k~~~L~~llk~~~---~~~kvLVF~nT~~~ae~La~~L~~--------~~~v~~LhG~ms~~ 738 (1134)
.+ ...+++.++..+. -.+-|+||..--..+-.|+.+|.. .+.++.+|.-+...
T Consensus 608 ~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~ 687 (1282)
T KOG0921|consen 608 SYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQ 687 (1282)
T ss_pred hhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccH
Confidence 00 1122333333222 246788999888888888777632 46788899999999
Q ss_pred HHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecC------------------CCChhhHHHhhhccCcCCCcce
Q 047890 739 ERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDF------------------PNGVEDYVHRIGRTGRAGATGV 800 (1134)
Q Consensus 739 eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~------------------P~s~~~yiQRiGRagR~GqkG~ 800 (1134)
+..+|.+....|..+||++|.+++.-|.|.++..||+.+. -.+..+.+||.||++|. ++|.
T Consensus 688 eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~ 766 (1282)
T KOG0921|consen 688 EQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGF 766 (1282)
T ss_pred hhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccc
Confidence 9999999989999999999999999999988777775432 12556789999999997 5677
Q ss_pred eEEEe
Q 047890 801 AHTFF 805 (1134)
Q Consensus 801 ~ii~~ 805 (1134)
|+.++
T Consensus 767 ~f~lc 771 (1282)
T KOG0921|consen 767 CFHLC 771 (1282)
T ss_pred ccccc
Confidence 66554
No 149
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=1e-12 Score=161.99 Aligned_cols=127 Identities=24% Similarity=0.218 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|+++|.-+--.+ ....|+.+.||-|||+++.+|++.... .+..|.||+.+.-||..-.+++..+...+++
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL-------~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNAL-------TGKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhh-------cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 3677777665444 455699999999999999998876443 5778999999999999999999998888899
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhc------ccCCCCeEEEEEcchhhhh
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMK------KIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~------~l~l~~l~lVVIDEAHrll 616 (1134)
.|.++.++...... ...-.|+|+++|...| +|+|..+ ......+.++||||+|.++
T Consensus 156 tvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99998876654433 3344699999999876 3444322 2345678899999999754
No 150
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.50 E-value=4.5e-13 Score=155.01 Aligned_cols=265 Identities=23% Similarity=0.268 Sum_probs=169.3
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhh
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l 576 (1134)
++-++||-||||.- ++..+. .....++.-|.+.||..+++.+++.+ |.|-+++|.+..... ..
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~-------~aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~-~~- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLK-------SAKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVL-DN- 256 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHh-------hhccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecC-CC-
Confidence 34469999999976 344444 23468999999999999999999874 556666654322211 11
Q ss_pred cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHH-HHhCCCCceEEEEeccCchhHHHHHHhh
Q 047890 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKI-VNEMPPHRQTLMYTATWPKDVRKIASDL 655 (1134)
Q Consensus 577 ~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~I-L~~l~~~~qiLllSATl~~~v~~l~~~~ 655 (1134)
...+..+-||.+.+- ....+++.||||++.|.+....-.+.+. |....+...+. + .+.+.++++++
T Consensus 257 ~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLC---G--epsvldlV~~i 323 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLC---G--EPSVLDLVRKI 323 (700)
T ss_pred CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhcc---C--CchHHHHHHHH
Confidence 122556667743321 1235789999999999886544444333 33222222211 1 13455555555
Q ss_pred ccCC-eeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC--CCcEEEec
Q 047890 656 LVNP-VQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR--NFGAIAIH 732 (1134)
Q Consensus 656 l~~~-~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~--~~~v~~Lh 732 (1134)
+... ..+++. +++-.......+.+..-++.++.+.-++ |-+++.+-.+.+.+.+ +..+.+|.
T Consensus 324 ~k~TGd~vev~-------------~YeRl~pL~v~~~~~~sl~nlk~GDCvV--~FSkk~I~~~k~kIE~~g~~k~aVIY 388 (700)
T KOG0953|consen 324 LKMTGDDVEVR-------------EYERLSPLVVEETALGSLSNLKPGDCVV--AFSKKDIFTVKKKIEKAGNHKCAVIY 388 (700)
T ss_pred HhhcCCeeEEE-------------eecccCcceehhhhhhhhccCCCCCeEE--EeehhhHHHHHHHHHHhcCcceEEEe
Confidence 4321 111111 1111111111123334445556666544 5566677777777754 34589999
Q ss_pred CCCChhHHHHHHHHHhc--CCCCeeeecccceeccccCcceEEEeecCC---------CChhhHHHhhhccCcCCC---c
Q 047890 733 GDKSQGERDWVLNQFRS--GKSPILVATDVAARGLDIKDIRVVINYDFP---------NGVEDYVHRIGRTGRAGA---T 798 (1134)
Q Consensus 733 G~ms~~eR~~il~~Frs--Ge~~VLVATdvl~~GLDIp~v~~VI~~d~P---------~s~~~yiQRiGRagR~Gq---k 798 (1134)
|+++.+.|..--..|++ ++++||||||++++|||+ +++.||++++- -...+..|..||+||.|. .
T Consensus 389 GsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~ 467 (700)
T KOG0953|consen 389 GSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQ 467 (700)
T ss_pred cCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcC
Confidence 99999999999999997 899999999999999999 79999998864 245678899999999874 5
Q ss_pred ceeEEEecc
Q 047890 799 GVAHTFFSE 807 (1134)
Q Consensus 799 G~~ii~~~~ 807 (1134)
|.+.++..+
T Consensus 468 G~vTtl~~e 476 (700)
T KOG0953|consen 468 GEVTTLHSE 476 (700)
T ss_pred ceEEEeeHh
Confidence 666666544
No 151
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.47 E-value=3.7e-12 Score=157.51 Aligned_cols=269 Identities=13% Similarity=0.101 Sum_probs=162.2
Q ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHh----hc
Q 047890 502 KTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE----LD 577 (1134)
Q Consensus 502 pTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~----l~ 577 (1134)
-+|||||.+|+-.+-..+. .+..+|||+|..+|+.|+.+.|++.+.. ..+..++++....+..+. ..
T Consensus 168 ~~GSGKTevyl~~i~~~l~-------~Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLR-------AGRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred CCCCcHHHHHHHHHHHHHH-------cCCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHHHhC
Confidence 3699999999988877776 5778999999999999999999987642 457778877665543332 33
Q ss_pred CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC-----chHHHHHHHHhCCCCceEEEEeccCchhHHHHH
Q 047890 578 QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG-----FEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652 (1134)
Q Consensus 578 ~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g-----f~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~ 652 (1134)
..+.|||+|-..+ ...+.++++|||||-|.-.... |...-..++.....+..+|+.|||..-+....+
T Consensus 239 G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 4489999994333 2457899999999999644321 111111223333456679999999654443322
Q ss_pred HhhccCCeeeeeccchhhhcccceeeEEEecchh--------------HHHHHHHHHHHHHhcCCEEEEEeCcHHHH---
Q 047890 653 SDLLVNPVQVNIGNVDELAANKAITQHVEVVPQM--------------EKERRLQQILRAQERGSRVIIFCSTKRLC--- 715 (1134)
Q Consensus 653 ~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~--------------ek~~~L~~llk~~~~~~kvLVF~nT~~~a--- 715 (1134)
..- ....+.... .... . ....+.+++.. -....+..+.+.+..+ ++|||.|.+-.+
T Consensus 312 ~~g--~~~~~~~~~-~~~~--~-~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l 384 (665)
T PRK14873 312 ESG--WAHDLVAPR-PVVR--A-RAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSL 384 (665)
T ss_pred hcC--cceeecccc-cccc--C-CCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCee
Confidence 211 111010000 0000 0 00111111110 1123456666666777 999999865322
Q ss_pred --------------------------------------------------------HHHHHHhcCC---CcEEEecCCCC
Q 047890 716 --------------------------------------------------------DQLARSIGRN---FGAIAIHGDKS 736 (1134)
Q Consensus 716 --------------------------------------------------------e~La~~L~~~---~~v~~LhG~ms 736 (1134)
+++++.|.+. ..+..+
T Consensus 385 ~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~----- 459 (665)
T PRK14873 385 ACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS----- 459 (665)
T ss_pred EhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE-----
Confidence 2222222221 122222
Q ss_pred hhHHHHHHHHHhcCCCCeeeecc----cceeccccCcceEEEeecCCC------------ChhhHHHhhhccCcCCCcce
Q 047890 737 QGERDWVLNQFRSGKSPILVATD----VAARGLDIKDIRVVINYDFPN------------GVEDYVHRIGRTGRAGATGV 800 (1134)
Q Consensus 737 ~~eR~~il~~FrsGe~~VLVATd----vl~~GLDIp~v~~VI~~d~P~------------s~~~yiQRiGRagR~GqkG~ 800 (1134)
+++.+++.|. ++.+|||+|. ++. .++++|+.+|... ....+.|.+||++|..+.|.
T Consensus 460 --d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~ 531 (665)
T PRK14873 460 --GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQ 531 (665)
T ss_pred --ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCE
Confidence 2345788886 5999999998 555 3567766655321 13455789999999999999
Q ss_pred eEEEec
Q 047890 801 AHTFFS 806 (1134)
Q Consensus 801 ~ii~~~ 806 (1134)
+++...
T Consensus 532 V~iq~~ 537 (665)
T PRK14873 532 VVVVAE 537 (665)
T ss_pred EEEEeC
Confidence 988753
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.47 E-value=1e-11 Score=155.77 Aligned_cols=118 Identities=20% Similarity=0.379 Sum_probs=81.2
Q ss_pred hcCCEEEEEeCcHHHHHHHHHHhcCCCc-EEEecCCCChhHHHHHHHHHhc----CCCCeeeecccceeccccCc--ceE
Q 047890 700 ERGSRVIIFCSTKRLCDQLARSIGRNFG-AIAIHGDKSQGERDWVLNQFRS----GKSPILVATDVAARGLDIKD--IRV 772 (1134)
Q Consensus 700 ~~~~kvLVF~nT~~~ae~La~~L~~~~~-v~~LhG~ms~~eR~~il~~Frs----Ge~~VLVATdvl~~GLDIp~--v~~ 772 (1134)
...+.+|||+++.+..+.++..|..... .+.+++. ..+..+++.|++ ++..||++|..+.+|||+++ +.+
T Consensus 532 ~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 532 EKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3455689999999999999998854322 2344553 356778877764 67789999999999999976 678
Q ss_pred EEeecCCCC-h-----------------------------hhHHHhhhccCcCCCcceeEEEecccc--hHHHHHHHHHH
Q 047890 773 VINYDFPNG-V-----------------------------EDYVHRIGRTGRAGATGVAHTFFSEQD--SKYAADLVKVL 820 (1134)
Q Consensus 773 VI~~d~P~s-~-----------------------------~~yiQRiGRagR~GqkG~~ii~~~~~d--~~~~~~l~k~L 820 (1134)
||+..+|.. + ..+.|.+||.-|..+.--++++++..- ..+-..+++.|
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 988776631 1 123589999999876554556665542 23334444444
No 153
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.46 E-value=7.5e-14 Score=126.17 Aligned_cols=73 Identities=45% Similarity=0.760 Sum_probs=70.9
Q ss_pred CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCC
Q 047890 724 RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAG 796 (1134)
Q Consensus 724 ~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~G 796 (1134)
.++.+..+|++++.++|.++++.|++++..|||||+++++|||++++++||++++|++...|+|++||++|.|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999986
No 154
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.46 E-value=2.1e-12 Score=159.63 Aligned_cols=312 Identities=18% Similarity=0.249 Sum_probs=208.6
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH-HhccCC
Q 047890 479 SPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN-KFGRSS 556 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~-kl~~~~ 556 (1134)
...++|.++++.+.+. +++|+.+++|||||+|+-++++. +...-++++|+|..+++...+..+. +|....
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--------CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 3489999999988865 57889999999999997766554 2355689999999998887766654 455556
Q ss_pred CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC------chHHHHHHHHh
Q 047890 557 RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG------FEPQIRKIVNE 630 (1134)
Q Consensus 557 ~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g------f~~~i~~IL~~ 630 (1134)
+..++.+.|....+..+. ...+|+|+||+++..+- ....+++.|+||+|.+.+.. ... ++.|...
T Consensus 1215 G~~~~~l~ge~s~~lkl~---~~~~vii~tpe~~d~lq-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q 1285 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDLKLL---QKGQVIISTPEQWDLLQ-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQ 1285 (1674)
T ss_pred CceEEecCCccccchHHh---hhcceEEechhHHHHHh-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHH
Confidence 777777777666554433 33689999999986651 55678999999999876422 112 5566666
Q ss_pred CCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHH--------HHHHHHHHHHHhcC
Q 047890 631 MPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEK--------ERRLQQILRAQERG 702 (1134)
Q Consensus 631 l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek--------~~~L~~llk~~~~~ 702 (1134)
+.++.+++.+|..+.. .++++ .......+++. .......+..++..+....- ...+.++.+.....
T Consensus 1286 ~~k~ir~v~ls~~lan-a~d~i--g~s~~~v~Nf~---p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLAN-ARDLI--GASSSGVFNFS---PSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHhheeEEEeehhhcc-chhhc--cccccceeecC---cccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCC
Confidence 7777888988887643 33331 11111122221 11122222223333322221 22344555555678
Q ss_pred CEEEEEeCcHHHHHHHHHHh-----------------------cCCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc
Q 047890 703 SRVIIFCSTKRLCDQLARSI-----------------------GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759 (1134)
Q Consensus 703 ~kvLVF~nT~~~ae~La~~L-----------------------~~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd 759 (1134)
++.+||+.+++.|..++..| ++.++..+=|-+++..+...+-..|..|.+.|+|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 89999999999887665433 1123333338889999998888999999999999886
Q ss_pred cceeccccCcceEEEe----ec------CCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHH
Q 047890 760 VAARGLDIKDIRVVIN----YD------FPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLV 817 (1134)
Q Consensus 760 vl~~GLDIp~v~~VI~----~d------~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~ 817 (1134)
- ..|+-...--+||+ || .+-...+.+|++|++.| .|.|+++....+..++++++
T Consensus 1440 ~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1440 D-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred c-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhc
Confidence 5 77776654333442 33 23357889999999999 46799999988887766653
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.45 E-value=2.2e-11 Score=152.69 Aligned_cols=120 Identities=18% Similarity=0.271 Sum_probs=84.2
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcCCCc--EEEecCCCChhHHHHHHHHHhcCCC-CeeeecccceeccccCcc--eEEEee
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGRNFG--AIAIHGDKSQGERDWVLNQFRSGKS-PILVATDVAARGLDIKDI--RVVINY 776 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~~~~--v~~LhG~ms~~eR~~il~~FrsGe~-~VLVATdvl~~GLDIp~v--~~VI~~ 776 (1134)
.+++|||+.+.+.++.+++.|..... .+..++.. .+..+++.|+...- -|+|+|..+.+|||+++- .+||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 45899999999999999999976443 34444443 34478888886655 899999999999999774 668887
Q ss_pred cCCCC------------------------------hhhHHHhhhccCcCCCcceeEEEecccchH--HHHHHHHHHHhhc
Q 047890 777 DFPNG------------------------------VEDYVHRIGRTGRAGATGVAHTFFSEQDSK--YAADLVKVLEGAN 824 (1134)
Q Consensus 777 d~P~s------------------------------~~~yiQRiGRagR~GqkG~~ii~~~~~d~~--~~~~l~k~L~~~~ 824 (1134)
.+|.- ...+.|.+||+-|.-...-++++++..-.. +-..+.+.|....
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~~ 635 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPFP 635 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCCc
Confidence 76631 234569999999976555555555543222 4445555555433
No 156
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.45 E-value=3.6e-12 Score=145.33 Aligned_cols=298 Identities=20% Similarity=0.291 Sum_probs=169.1
Q ss_pred HHH-HHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEE
Q 047890 484 QAQ-TWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTC 562 (1134)
Q Consensus 484 Q~e-aI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~ 562 (1134)
|++ .+..+..+.-++++++||||||.. +|-|..-.... ....|.+.-|.+.-|.++...+..- .++....
T Consensus 51 ~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~----~~~~v~CTQprrvaamsva~RVadE---MDv~lG~ 121 (699)
T KOG0925|consen 51 QKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELS----HLTGVACTQPRRVAAMSVAQRVADE---MDVTLGE 121 (699)
T ss_pred hHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHh----hccceeecCchHHHHHHHHHHHHHH---hccccch
Confidence 444 455555667788899999999975 34332221111 1235677778887777766554431 1122211
Q ss_pred ecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh--hhccCchHHHHHHHHhCCCCceEEEE
Q 047890 563 LYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR--MLDMGFEPQIRKIVNEMPPHRQTLMY 640 (1134)
Q Consensus 563 l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr--ll~~gf~~~i~~IL~~l~~~~qiLll 640 (1134)
-+|-.-..+.. .....-+-++|.+.|+.-... .-.+..+++||+||||. +...-+...++.++... ++.++|.+
T Consensus 122 EVGysIrfEdC--~~~~T~Lky~tDgmLlrEams-~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvm 197 (699)
T KOG0925|consen 122 EVGYSIRFEDC--TSPNTLLKYCTDGMLLREAMS-DPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVM 197 (699)
T ss_pred hcccccccccc--CChhHHHHHhcchHHHHHHhh-CcccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEe
Confidence 11111110000 000011224444444433221 23477899999999995 11111233444444444 58889999
Q ss_pred eccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHH-HHHHHHHHHHH--hcCCEEEEEeCcHHHHHH
Q 047890 641 TATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEK-ERRLQQILRAQ--ERGSRVIIFCSTKRLCDQ 717 (1134)
Q Consensus 641 SATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek-~~~L~~llk~~--~~~~kvLVF~nT~~~ae~ 717 (1134)
|||+. ..++ ..++.+.-.+.+.... .+...+......+. +.++..++... ...+-+|||....++++.
T Consensus 198 Satl~--a~Kf-q~yf~n~Pll~vpg~~------PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~ 268 (699)
T KOG0925|consen 198 SATLD--AEKF-QRYFGNAPLLAVPGTH------PVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIED 268 (699)
T ss_pred ecccc--hHHH-HHHhCCCCeeecCCCC------ceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHH
Confidence 99964 3333 3444444444443211 11112211122222 22333333322 335689999999999999
Q ss_pred HHHHhcC----------CCcEEEecCCCChhHHHHHHHHHhc---C--CCCeeeecccceeccccCcceEEEeec-----
Q 047890 718 LARSIGR----------NFGAIAIHGDKSQGERDWVLNQFRS---G--KSPILVATDVAARGLDIKDIRVVINYD----- 777 (1134)
Q Consensus 718 La~~L~~----------~~~v~~LhG~ms~~eR~~il~~Frs---G--e~~VLVATdvl~~GLDIp~v~~VI~~d----- 777 (1134)
.++.+.+ .+.|+.|| .++...|++-... | ..+|+|+|++++..|.|++|.+||.-+
T Consensus 269 aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqk 344 (699)
T KOG0925|consen 269 ACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQK 344 (699)
T ss_pred HHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhc
Confidence 9888853 24566777 3333344332221 2 347999999999999999999999744
Q ss_pred -------------CCCChhhHHHhhhccCcCCCcceeEEEeccc
Q 047890 778 -------------FPNGVEDYVHRIGRTGRAGATGVAHTFFSEQ 808 (1134)
Q Consensus 778 -------------~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~ 808 (1134)
.|-|...-.||.||+||. ..|.|+.+|+++
T Consensus 345 VYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 345 VYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred ccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 245667778999999997 789999999865
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.42 E-value=1.2e-11 Score=154.51 Aligned_cols=309 Identities=21% Similarity=0.204 Sum_probs=172.4
Q ss_pred CCHHHHHHHHHHHcC------CC--EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 480 PTPIQAQTWPIALQG------RD--IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 480 prpiQ~eaI~~il~g------rd--vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
-+.||-+|+..+..- .. +|-.|.||+|||++=.-.+..+ .+...+.++.|..-.|.|..|.-+++++
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaL-----sd~~~g~RfsiALGLRTLTLQTGda~r~ 483 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYAL-----RDDKQGARFAIALGLRSLTLQTGHALKT 483 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHh-----CCCCCCceEEEEccccceeccchHHHHH
Confidence 468999999888752 22 4445999999998754433322 2334677888888888999888888877
Q ss_pred hccCCCCceEEecCCCCCc----------------------h---------------------hHHhhcC--------CC
Q 047890 552 FGRSSRLSCTCLYGGAPKG----------------------P---------------------QLRELDQ--------GA 580 (1134)
Q Consensus 552 l~~~~~i~v~~l~GG~~~~----------------------~---------------------~l~~l~~--------~~ 580 (1134)
-+.-..-.+.+++|+.... . ....+.+ ..
T Consensus 484 rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~a 563 (1110)
T TIGR02562 484 RLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAA 563 (1110)
T ss_pred hcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcC
Confidence 5444344444444432100 0 0000000 15
Q ss_pred cEEEeChHHHHHHHHhc---ccCCC----CeEEEEEcchhhhhccCchHHHHHHHHhC-CCCceEEEEeccCchhHHHHH
Q 047890 581 DIVVATPGRLNDILEMK---KIDFG----QVSLLVLDEADRMLDMGFEPQIRKIVNEM-PPHRQTLMYTATWPKDVRKIA 652 (1134)
Q Consensus 581 dIIVaTPerL~~lL~~~---~l~l~----~l~lVVIDEAHrll~~gf~~~i~~IL~~l-~~~~qiLllSATl~~~v~~l~ 652 (1134)
.|+|||++.|+...... ...+. .-+.|||||+|.+-... ...+..++..+ .-...+|+||||+|+.+...+
T Consensus 564 pv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 564 PVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred CeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 79999999987765211 11111 12579999999743322 23334444321 134569999999998876544
Q ss_pred Hhhc-----------c---CCeeeeeccchhhhc---------------------------ccceeeEEEe--cchh---
Q 047890 653 SDLL-----------V---NPVQVNIGNVDELAA---------------------------NKAITQHVEV--VPQM--- 686 (1134)
Q Consensus 653 ~~~l-----------~---~~~~i~i~~~d~l~~---------------------------~~~i~~~~~~--v~~~--- 686 (1134)
...+ . .++.|....+|+... .........+ +...
T Consensus 643 ~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~ 722 (1110)
T TIGR02562 643 FRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRE 722 (1110)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccc
Confidence 3321 1 111121111111100 0001111111 1111
Q ss_pred --HHH-----HHHHHHHHHHh--------cCCE---EEEEeCcHHHHHHHHHHhcC-------CCcEEEecCCCChhHHH
Q 047890 687 --EKE-----RRLQQILRAQE--------RGSR---VIIFCSTKRLCDQLARSIGR-------NFGAIAIHGDKSQGERD 741 (1134)
Q Consensus 687 --ek~-----~~L~~llk~~~--------~~~k---vLVF~nT~~~ae~La~~L~~-------~~~v~~LhG~ms~~eR~ 741 (1134)
... .++..++.... .+++ -||-+++++.+-.++..|.. .+.+.++|+......|.
T Consensus 723 ~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs 802 (1110)
T TIGR02562 723 NESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRS 802 (1110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHH
Confidence 011 11122222111 2233 35667777776666666532 23478899998777666
Q ss_pred HHHHHH----------------------hc----CCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcC
Q 047890 742 WVLNQF----------------------RS----GKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRA 795 (1134)
Q Consensus 742 ~il~~F----------------------rs----Ge~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~ 795 (1134)
.+.+.+ ++ +...|+|+|.+++.|+|+. .+.+| .-+.++...+|++||+.|.
T Consensus 803 ~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~~R~ 879 (1110)
T TIGR02562 803 YIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSIIQLAGRVNRH 879 (1110)
T ss_pred HHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCcHHHHHHHhhccccc
Confidence 554332 12 4667999999999999994 34333 3345699999999999998
Q ss_pred CC
Q 047890 796 GA 797 (1134)
Q Consensus 796 Gq 797 (1134)
+.
T Consensus 880 ~~ 881 (1110)
T TIGR02562 880 RL 881 (1110)
T ss_pred cc
Confidence 75
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.41 E-value=1.6e-11 Score=150.32 Aligned_cols=288 Identities=16% Similarity=0.195 Sum_probs=178.2
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhh
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l 576 (1134)
.+|.+|+|||||.+.+-++-..+. ....++|||+-.++|+.++.+.|++.... ++. .+.+.... .+.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~-~i~-- 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY-IID-- 118 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc-ccc--
Confidence 577799999999874333222221 24569999999999999999999875422 111 11111110 000
Q ss_pred cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHH-------HHHHhCCCCceEEEEeccCchhHH
Q 047890 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIR-------KIVNEMPPHRQTLMYTATWPKDVR 649 (1134)
Q Consensus 577 ~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~-------~IL~~l~~~~qiLllSATl~~~v~ 649 (1134)
....+.++++.++|..+. ...+.++++|||||+..++..-|.+.++ .+...+.....+|++-||+.....
T Consensus 119 ~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTV 195 (824)
T ss_pred ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHH
Confidence 113577888888876644 2245679999999999876653333322 223344566679999999999999
Q ss_pred HHHHhhccCCeeeeeccch-------------------hhhcccce---eeE------------EEecchhHHHHHHHHH
Q 047890 650 KIASDLLVNPVQVNIGNVD-------------------ELAANKAI---TQH------------VEVVPQMEKERRLQQI 695 (1134)
Q Consensus 650 ~l~~~~l~~~~~i~i~~~d-------------------~l~~~~~i---~~~------------~~~v~~~ek~~~L~~l 695 (1134)
++++.+..+.....+.+.. .+...... ... .......+....+..+
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L 275 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSEL 275 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHH
Confidence 9998875433221111110 00000000 000 0000112234567777
Q ss_pred HHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceE--
Q 047890 696 LRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV-- 772 (1134)
Q Consensus 696 lk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~-- 772 (1134)
+..+..+++|.||+.|+..++.+++.... ...+..+++..... ++ +. -++++|+|=|.++..||++....+
T Consensus 276 ~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 276 LARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred HHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEeccchhhceE
Confidence 78888999999999999999999888755 45566776655544 22 22 467999999999999999976543
Q ss_pred EEeecCC----CChhhHHHhhhccCcCCCcceeEEEecc
Q 047890 773 VINYDFP----NGVEDYVHRIGRTGRAGATGVAHTFFSE 807 (1134)
Q Consensus 773 VI~~d~P----~s~~~yiQRiGRagR~GqkG~~ii~~~~ 807 (1134)
|+.|=-| .+..+..|++||+-... ....+++++.
T Consensus 350 ~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 350 MFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 3333222 24557899999996654 4455566553
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=1e-10 Score=147.55 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=60.8
Q ss_pred cCCCCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 047890 475 AGFSSPTPIQAQTWPIAL----QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN 550 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il----~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~ 550 (1134)
+-|..++|.|.+....+. .+.++|+.+|||+|||++.|.+++.++.... ...+++|++.|.+-..|+.++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----ccccEEEEcccchHHHHHHHHHH
Confidence 346667999999876665 5688999999999999999999888765321 33689999999999999999999
Q ss_pred Hh
Q 047890 551 KF 552 (1134)
Q Consensus 551 kl 552 (1134)
++
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 84
No 160
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.37 E-value=1.5e-12 Score=153.62 Aligned_cols=115 Identities=18% Similarity=0.272 Sum_probs=96.7
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-------------------CCcEEEecCCCChhHHHHHHHHHhcC--C-CCeeeecc
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-------------------NFGAIAIHGDKSQGERDWVLNQFRSG--K-SPILVATD 759 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-------------------~~~v~~LhG~ms~~eR~~il~~FrsG--e-~~VLVATd 759 (1134)
+.++|||......++.|.+.|.+ +...+.+.|..+..+|+++|++|++. - .-+||+|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 46899999999888888888743 12356788999999999999999863 2 35789999
Q ss_pred cceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHH
Q 047890 760 VAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADL 816 (1134)
Q Consensus 760 vl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l 816 (1134)
+...|||+...+.+|.||..|++....|++-|+.|-|+++.|++|-.-.|....++|
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999776665544444
No 161
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.37 E-value=2.7e-12 Score=144.20 Aligned_cols=156 Identities=18% Similarity=0.215 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcC-------------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHH
Q 047890 483 IQAQTWPIALQG-------------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEA 549 (1134)
Q Consensus 483 iQ~eaI~~il~g-------------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el 549 (1134)
||.++|.+++.. +.+||++++|+|||++++..+..+...... .....+|||||. .|..+|.+++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E~ 77 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEEI 77 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTT--SS-S-EEEEE-T-TTHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcccc--ccccceeEeecc-chhhhhhhhh
Confidence 688888888532 579999999999999977766544332111 112359999999 8889999999
Q ss_pred HHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHH---HhcccCCCCeEEEEEcchhhhhccCchHHHHH
Q 047890 550 NKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL---EMKKIDFGQVSLLVLDEADRMLDMGFEPQIRK 626 (1134)
Q Consensus 550 ~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL---~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~ 626 (1134)
.++.....+++....+...............+|+|+|++.+.... ....+...++++|||||+|.+.+. ......
T Consensus 78 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~ 155 (299)
T PF00176_consen 78 EKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYK 155 (299)
T ss_dssp HHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHH
T ss_pred ccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccc
Confidence 999865456666666554122222333455899999999998111 111122245899999999998543 344445
Q ss_pred HHHhCCCCceEEEEeccC
Q 047890 627 IVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 627 IL~~l~~~~qiLllSATl 644 (1134)
.+..+. ...++++|||.
T Consensus 156 ~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 156 ALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHCCC-ECEEEEE-SS-
T ss_pred cccccc-cceEEeecccc
Confidence 555565 55689999994
No 162
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.35 E-value=2.3e-10 Score=134.21 Aligned_cols=292 Identities=21% Similarity=0.271 Sum_probs=194.0
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhccCC-CCc----eEEecC--------------CCCCchhHHhh-----------
Q 047890 527 RNGPTVLVLAPTRELATQIQDEANKFGRSS-RLS----CTCLYG--------------GAPKGPQLREL----------- 576 (1134)
Q Consensus 527 ~~g~kvLVLvPTreLa~Q~~~el~kl~~~~-~i~----v~~l~G--------------G~~~~~~l~~l----------- 576 (1134)
-..|+||||||+|..|..|.+.|.+++... .+. ...-+| ...+......+
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 357899999999999999999887776441 100 000011 00000011110
Q ss_pred --------------cCCCcEEEeChHHHHHHHHh------cccCCCCeEEEEEcchhhhhccCch--HHHHHHHHhCCC-
Q 047890 577 --------------DQGADIVVATPGRLNDILEM------KKIDFGQVSLLVLDEADRMLDMGFE--PQIRKIVNEMPP- 633 (1134)
Q Consensus 577 --------------~~~~dIIVaTPerL~~lL~~------~~l~l~~l~lVVIDEAHrll~~gf~--~~i~~IL~~l~~- 633 (1134)
....|||||+|--|.-.+.. ..-.|+.|.++|||.||.|+-..|. ..+.+.|+..++
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC
Confidence 01379999999999877764 1123788999999999987654433 333344444432
Q ss_pred --------------------CceEEEEeccCchhHHHHHHhhccCCe-eeeeccchh-----hhcccceeeEEEecchh-
Q 047890 634 --------------------HRQTLMYTATWPKDVRKIASDLLVNPV-QVNIGNVDE-----LAANKAITQHVEVVPQM- 686 (1134)
Q Consensus 634 --------------------~~qiLllSATl~~~v~~l~~~~l~~~~-~i~i~~~d~-----l~~~~~i~~~~~~v~~~- 686 (1134)
-+|+|++|+...+++..+....+.+.. .+.+..... ......+.+.+.-++..
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 259999999999999999988665432 122211111 11122344444332211
Q ss_pred --HH-HHH----HHHHHHHHh---cCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCee
Q 047890 687 --EK-ERR----LQQILRAQE---RGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPIL 755 (1134)
Q Consensus 687 --ek-~~~----L~~llk~~~---~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VL 755 (1134)
+. +.. ...++-.+. ....+|||+++--+.-.|..+|++ ++..+.++--.+..+..+.-..|..|+..||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 11 111 122232223 457899999999999999999864 6778889999999999999999999999999
Q ss_pred eecc--cceeccccCcceEEEeecCCCChhhHHHhhhccCcCCC------cceeEEEecccchHHHHHHHH
Q 047890 756 VATD--VAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGA------TGVAHTFFSEQDSKYAADLVK 818 (1134)
Q Consensus 756 VATd--vl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~Gq------kG~~ii~~~~~d~~~~~~l~k 818 (1134)
|.|. -.-+=..|.++..||+|.+|..+.-|.-.+.-...... ...|.++++.-|.-.+++|+-
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 9994 44556778899999999999999888777765544432 578999999988877777653
No 163
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=4.9e-11 Score=148.55 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccC
Q 047890 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK 768 (1134)
Q Consensus 690 ~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp 768 (1134)
.++.++.+....+.+|||-|.|.+..+.|++.|.. +++..+|+......+- +|+.. .--.-.|-|||++++||.||.
T Consensus 616 Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EA-eIVA~-AG~~GaVTIATNMAGRGTDIk 693 (1112)
T PRK12901 616 AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEA-EIVAE-AGQPGTVTIATNMAGRGTDIK 693 (1112)
T ss_pred HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHH-HHHHh-cCCCCcEEEeccCcCCCcCcc
Confidence 34556666667899999999999999999999964 6666677665443332 23322 222346899999999999995
Q ss_pred --------cceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 769 --------DIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 769 --------~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
+=-+||-...+.|.....|..||+||-|.+|.+..|++-+|.
T Consensus 694 Lg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 694 LSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 223688888999999999999999999999999999987663
No 164
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.28 E-value=6.6e-12 Score=112.85 Aligned_cols=79 Identities=47% Similarity=0.762 Sum_probs=72.7
Q ss_pred HHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCC
Q 047890 718 LARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAG 796 (1134)
Q Consensus 718 La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~G 796 (1134)
|++.|. .++.+..+|++++.++|.++++.|++++..|||+|+++++|+|++.+++||+++++++...|+|++||++|.|
T Consensus 3 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 3 LAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred HHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 444443 3678999999999999999999999999999999999999999999999999999999999999999999975
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.17 E-value=1.3e-09 Score=140.52 Aligned_cols=280 Identities=20% Similarity=0.276 Sum_probs=158.1
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
+..+|+--||||||++.+..+-.+++. ...++|||||..+.|-.|+.++|.++.......+ .......+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHHHH
Confidence 468999999999999976655544443 4678999999999999999999999875533322 222223333
Q ss_pred h-hcCC-CcEEEeChHHHHHHHHhcc--cCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhH--
Q 047890 575 E-LDQG-ADIVVATPGRLNDILEMKK--IDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDV-- 648 (1134)
Q Consensus 575 ~-l~~~-~dIIVaTPerL~~lL~~~~--l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v-- 648 (1134)
. +... ..|||+|.++|...+.... ....+--+||+|||||--. ...-..+-..+ ++...++||+|.-..-
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKAL-KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHh-ccceEEEeeCCccccccc
Confidence 3 3323 4899999999988775541 1122333788999999543 22222223333 3356999999942211
Q ss_pred ---HHHHHhhccCCeeeeeccchhhhcccceeeEEEec------------------------c-----------------
Q 047890 649 ---RKIASDLLVNPVQVNIGNVDELAANKAITQHVEVV------------------------P----------------- 684 (1134)
Q Consensus 649 ---~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v------------------------~----------------- 684 (1134)
..+...++..+. + .+.+.....+...+... .
T Consensus 420 ~tt~~~fg~ylh~Y~---i--~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 494 (962)
T COG0610 420 DTTKDVFGDYLHTYT---I--TDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFL 494 (962)
T ss_pred cchhhhhcceeEEEe---c--chhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHH
Confidence 122222221110 0 00000000000000000 0
Q ss_pred ---hhHHHHHHHHHHHH----HhcCCEEEEEeCcHHHHHHHHHHhcCCC----------c-------EEEe-------cC
Q 047890 685 ---QMEKERRLQQILRA----QERGSRVIIFCSTKRLCDQLARSIGRNF----------G-------AIAI-------HG 733 (1134)
Q Consensus 685 ---~~ek~~~L~~llk~----~~~~~kvLVF~nT~~~ae~La~~L~~~~----------~-------v~~L-------hG 733 (1134)
......+..++... .....+++|.|.++..+..+++.+.... . .... |.
T Consensus 495 ~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 574 (962)
T COG0610 495 AMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHA 574 (962)
T ss_pred hcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhH
Confidence 00000111111111 2234578888888775555554432110 0 0000 11
Q ss_pred CCChhHHHHHHHHH--hcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcC
Q 047890 734 DKSQGERDWVLNQF--RSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRA 795 (1134)
Q Consensus 734 ~ms~~eR~~il~~F--rsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~ 795 (1134)
. ....+.....+| ++...+|||.++++-.|+|.|.++.+. +|-|--.-..+|++.|+.|.
T Consensus 575 ~-~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 575 K-LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred H-HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccC
Confidence 1 122233444553 456889999999999999999776655 67777788899999999995
No 166
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.97 E-value=9.7e-08 Score=120.70 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=59.9
Q ss_pred CCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCC--Ccc--------eeEEEecccchHHHHHHHHHH
Q 047890 751 KSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAG--ATG--------VAHTFFSEQDSKYAADLVKVL 820 (1134)
Q Consensus 751 e~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~G--qkG--------~~ii~~~~~d~~~~~~l~k~L 820 (1134)
.+++|++..++.+|+|.|++-.++.+....+...-.|.+||..|.- +.| ...+++++....++..|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998889999999999999942 222 344556677788888888888
Q ss_pred Hhh
Q 047890 821 EGA 823 (1134)
Q Consensus 821 ~~~ 823 (1134)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 765
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.95 E-value=7e-09 Score=117.51 Aligned_cols=76 Identities=24% Similarity=0.272 Sum_probs=58.9
Q ss_pred CCCCCCHHHHH----HHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 476 GFSSPTPIQAQ----TWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 476 Gf~~prpiQ~e----aI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
-|. +++.|.+ ++..+..+.++|+.||||+|||++++++++.++....... ...+++|+++|.++.+|...++++
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-QKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-cccceeEEeccHHHHHHHHHHHHh
Confidence 344 6999999 4555557889999999999999999999987765422110 234899999999999998888877
Q ss_pred hc
Q 047890 552 FG 553 (1134)
Q Consensus 552 l~ 553 (1134)
+.
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.95 E-value=7e-09 Score=117.51 Aligned_cols=76 Identities=24% Similarity=0.272 Sum_probs=58.9
Q ss_pred CCCCCCHHHHH----HHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 476 GFSSPTPIQAQ----TWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 476 Gf~~prpiQ~e----aI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
-|. +++.|.+ ++..+..+.++|+.||||+|||++++++++.++....... ...+++|+++|.++.+|...++++
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-QKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-cccceeEEeccHHHHHHHHHHHHh
Confidence 344 6999999 4555557889999999999999999999987765422110 234899999999999998888877
Q ss_pred hc
Q 047890 552 FG 553 (1134)
Q Consensus 552 l~ 553 (1134)
+.
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 169
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2.7e-08 Score=115.41 Aligned_cols=343 Identities=20% Similarity=0.243 Sum_probs=207.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEE-ccCCCch--hHHHHHHHHHHHHHhc-----C-------------------CCCC
Q 047890 476 GFSSPTPIQAQTWPIALQGRDIVAI-AKTGSGK--TLGYLIPAFILLRQLH-----N-------------------NPRN 528 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~grdvLl~-ApTGSGK--Tla~llpal~~L~~~~-----~-------------------~~~~ 528 (1134)
.-..+|+.|.+.+..+..-+|++.. ...+.|+ +-+|.+-++.++.+.. + ....
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3446899999999999988998775 3445566 4455566665543211 0 1124
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCC-c--------eEEecCC---------------------CCCchh------
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRL-S--------CTCLYGG---------------------APKGPQ------ 572 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i-~--------v~~l~GG---------------------~~~~~~------ 572 (1134)
.++||||||+|+-|..+.+.|..++....- + ...-+++ ...+..
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 689999999999999999998877432111 0 0011111 111100
Q ss_pred ------HHhhcCCCcEEEeChHHHHHHHHhc-----cc-CCCCeEEEEEcchhhhhccCchHHHHHHH---HhCCCC---
Q 047890 573 ------LRELDQGADIVVATPGRLNDILEMK-----KI-DFGQVSLLVLDEADRMLDMGFEPQIRKIV---NEMPPH--- 634 (1134)
Q Consensus 573 ------l~~l~~~~dIIVaTPerL~~lL~~~-----~l-~l~~l~lVVIDEAHrll~~gf~~~i~~IL---~~l~~~--- 634 (1134)
+..-....|||||+|--|.-++... .+ .++.|.++|||-||.|+...|+..+ .|+ +.++..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~-~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLL-HIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHhhcCcccccC
Confidence 0001124799999998887777521 12 2678899999999998877665433 333 333322
Q ss_pred ------------------ceEEEEeccCchhHHHHHHhhccCCe-eeeeccc----hhhhcccceeeEEEe--------c
Q 047890 635 ------------------RQTLMYTATWPKDVRKIASDLLVNPV-QVNIGNV----DELAANKAITQHVEV--------V 683 (1134)
Q Consensus 635 ------------------~qiLllSATl~~~v~~l~~~~l~~~~-~i~i~~~----d~l~~~~~i~~~~~~--------v 683 (1134)
+|+|+||+-.......+...++.+.. .+..... ........+++.+.. +
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 36777877766666666665554321 1111000 000011112221111 1
Q ss_pred chhHHHHHHHHHHHHHh--cCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-
Q 047890 684 PQMEKERRLQQILRAQE--RGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD- 759 (1134)
Q Consensus 684 ~~~ek~~~L~~llk~~~--~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd- 759 (1134)
.+..-.-.+..|+-.+. ...-+|||.++.-..-++..++++ .+..+.||.-.+..+-.+.-+.|-.|...|||-|.
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 11111111222221111 135689999999999999988865 34455556555666666677789999999999995
Q ss_pred -cceeccccCcceEEEeecCCCChhhH---HHhhhccCcCC----CcceeEEEecccchHHHHHHHHH
Q 047890 760 -VAARGLDIKDIRVVINYDFPNGVEDY---VHRIGRTGRAG----ATGVAHTFFSEQDSKYAADLVKV 819 (1134)
Q Consensus 760 -vl~~GLDIp~v~~VI~~d~P~s~~~y---iQRiGRagR~G----qkG~~ii~~~~~d~~~~~~l~k~ 819 (1134)
-.-+-.+|.+|..||+|.+|.++.-| +-+++|+.--| ..-.|.++|++-|.-.++.++-.
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGt 679 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGT 679 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhH
Confidence 44677899999999999999987654 55666664433 34588999998888777766543
No 170
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.91 E-value=2.4e-08 Score=123.59 Aligned_cols=315 Identities=18% Similarity=0.177 Sum_probs=188.6
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCc
Q 047890 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLS 559 (1134)
Q Consensus 480 prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~ 559 (1134)
++++=.+.+-.+.-+...|+...||-|||+++.+|+..... .+..|.||+-..-||.--.+++.++....++.
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL-------~gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL-------AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc-------CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 34444444445556677899999999999999998764332 56688999999999998888888888888999
Q ss_pred eEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhc------ccCCCCeEEEEEcchhhhhc----------c----
Q 047890 560 CTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMK------KIDFGQVSLLVLDEADRMLD----------M---- 618 (1134)
Q Consensus 560 v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~------~l~l~~l~lVVIDEAHrll~----------~---- 618 (1134)
+.++..+....+....+ .|||.++|...| +++|..+ ......+.+.|+||+|.++= .
T Consensus 152 vG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~ 229 (822)
T COG0653 152 VGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAED 229 (822)
T ss_pred eeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccccc
Confidence 99988887655544443 489999998766 3443322 22344678889999886431 0
Q ss_pred --CchHHHHHHHHhCCC---------------------------------------------------------------
Q 047890 619 --GFEPQIRKIVNEMPP--------------------------------------------------------------- 633 (1134)
Q Consensus 619 --gf~~~i~~IL~~l~~--------------------------------------------------------------- 633 (1134)
.+...+..++..+..
T Consensus 230 ~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVr 309 (822)
T COG0653 230 SSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVR 309 (822)
T ss_pred CchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEe
Confidence 001111111111100
Q ss_pred CceEEEEec------------------------------------------------------cCchhHHHHHHhhccCC
Q 047890 634 HRQTLMYTA------------------------------------------------------TWPKDVRKIASDLLVNP 659 (1134)
Q Consensus 634 ~~qiLllSA------------------------------------------------------Tl~~~v~~l~~~~l~~~ 659 (1134)
+-.++++-+ |...+..++...+..+.
T Consensus 310 d~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~v 389 (822)
T COG0653 310 DGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDV 389 (822)
T ss_pred cCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCce
Confidence 001111111 11111111111111110
Q ss_pred eeeeeccchhhhcccceeeEEEecchhHH-HHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCCh
Q 047890 660 VQVNIGNVDELAANKAITQHVEVVPQMEK-ERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQ 737 (1134)
Q Consensus 660 ~~i~i~~~d~l~~~~~i~~~~~~v~~~ek-~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~ 737 (1134)
+. +.....+ ........+ .....+| ..++.++......+.+|||-+.+++..+.|.+.|. .+++..+|...-..
T Consensus 390 v~--iPTnrp~-~R~D~~D~v-y~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 390 VV--IPTNRPI-IRLDEPDLV-YKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred ee--ccCCCcc-cCCCCcccc-ccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 00 0000000 000000111 1122233 34566666777889999999999999999999986 46777677765553
Q ss_pred hHHHHHHHHHhcCCCCeeeecccceeccccCcce-----------EEEeecCCCChhhHHHhhhccCcCCCcceeEEEec
Q 047890 738 GERDWVLNQFRSGKSPILVATDVAARGLDIKDIR-----------VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFS 806 (1134)
Q Consensus 738 ~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~-----------~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~ 806 (1134)
. +.-+-.+.--.--|-|||+++++|-||.--. +||-...-.|....-|..||+||-|..|....|++
T Consensus 466 ~--EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 466 R--EAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred H--HHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 3 3222232222335789999999999983222 35555565666777799999999999999888877
Q ss_pred ccc
Q 047890 807 EQD 809 (1134)
Q Consensus 807 ~~d 809 (1134)
-+|
T Consensus 544 leD 546 (822)
T COG0653 544 LED 546 (822)
T ss_pred hHH
Confidence 654
No 171
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.89 E-value=6.5e-09 Score=104.35 Aligned_cols=134 Identities=21% Similarity=0.185 Sum_probs=78.1
Q ss_pred CCCEEEEccCCCchhHHHHHHHHH-HHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFI-LLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ 572 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~-~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~ 572 (1134)
++-.+|-..+|+|||--.+--++. .+. .+.++|||+|||.+++.+.+.|+.. .+.+....-.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~------ 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM------ 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeee------
Confidence 445678889999999865443332 333 5679999999999999998888654 2222111110
Q ss_pred HHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC--chHHHHHHHHhCCCCceEEEEeccCchhH
Q 047890 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG--FEPQIRKIVNEMPPHRQTLMYTATWPKDV 648 (1134)
Q Consensus 573 l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g--f~~~i~~IL~~l~~~~qiLllSATl~~~v 648 (1134)
.....+.-|-|+|...+..++.. .....++++||+||||.+-... +...+... .. .....+|++|||.|-..
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT--
T ss_pred -ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCC
Confidence 01123456888999988887754 5667899999999999633221 12222222 22 23356999999987554
No 172
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.72 E-value=6.7e-08 Score=119.65 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=94.3
Q ss_pred CEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCC-CCe-eeecccceeccccCcceEEEeecCC
Q 047890 703 SRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGK-SPI-LVATDVAARGLDIKDIRVVINYDFP 779 (1134)
Q Consensus 703 ~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe-~~V-LVATdvl~~GLDIp~v~~VI~~d~P 779 (1134)
.++|||+.-...++.++..|. ..+....+.|.|+...|.+.+..|.++. ..| |++..+...||++..+++||..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 389999999999999988875 3566778899999999999999998542 334 5667999999999999999999999
Q ss_pred CChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHH
Q 047890 780 NGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKV 819 (1134)
Q Consensus 780 ~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~ 819 (1134)
|++....|.+-|+.|.|+...+.+.-..-.....++++++
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~i 659 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKI 659 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHH
Confidence 9999999999999999998877664333233333444443
No 173
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.64 E-value=1.9e-07 Score=104.08 Aligned_cols=128 Identities=27% Similarity=0.254 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
..|++.|.-++-.+..|+ |+...||-|||++..++++.... .+..|-||+-+..||..=++++..+...++
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-------~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG 146 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-------QGKGVHVVTSNDYLAKRDAEEMRPFYEFLG 146 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-------TSS-EEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-------hcCCcEEEeccHHHhhccHHHHHHHHHHhh
Confidence 358999999987776666 99999999999998877765443 567899999999999999999999999999
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHH-HHHHhcc------cCCCCeEEEEEcchhhhh
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLN-DILEMKK------IDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~-~lL~~~~------l~l~~l~lVVIDEAHrll 616 (1134)
+.+.++..+.........+ .++|+++|...|. ++|.... .....+.++||||+|.++
T Consensus 147 lsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999877644333333 3789999998773 4554321 124678999999999865
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.48 E-value=9.3e-06 Score=99.62 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=61.0
Q ss_pred CCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcC--CCcc-----------eeEEEecccchHHHHHH
Q 047890 750 GKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRA--GATG-----------VAHTFFSEQDSKYAADL 816 (1134)
Q Consensus 750 Ge~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~--GqkG-----------~~ii~~~~~d~~~~~~l 816 (1134)
...++|++--++-+|+|=|+|=.++-+....|...=+|.+||..|. .+.| ...+++...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999994 2333 23456777888888888
Q ss_pred HHHHHhh
Q 047890 817 VKVLEGA 823 (1134)
Q Consensus 817 ~k~L~~~ 823 (1134)
.+.++..
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 8777654
No 175
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.45 E-value=8.3e-08 Score=71.88 Aligned_cols=31 Identities=42% Similarity=0.875 Sum_probs=29.6
Q ss_pred CCCCcccccCCCCcceEeecCCcCceeeccC
Q 047890 22 LPKPWKGLIDGSTGLLYYWNPETNVTQYEKP 52 (1134)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (1134)
||.+|+...|..+|.+||||.+|++|+||+|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 8999999998779999999999999999998
No 176
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.44 E-value=1.1e-06 Score=103.60 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=75.9
Q ss_pred EEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH-hccCCCCceEEecCCCCCc----hhH
Q 047890 499 AIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK-FGRSSRLSCTCLYGGAPKG----PQL 573 (1134)
Q Consensus 499 l~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k-l~~~~~i~v~~l~GG~~~~----~~l 573 (1134)
..+.||||||++...+|+.+..+ .-...|+.|....+++-...-+.. +....-..-.+.+++.... ...
T Consensus 2 f~matgsgkt~~ma~lil~~y~k------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~f 75 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNF 75 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeeccc
Confidence 35789999999988777777663 233567777665555443322211 0000001111122222111 111
Q ss_pred HhhcCCCcEEEeChHHHHHHHHhcc---c---CCCCeEEE-EEcchhhhhccC-------------chHHHHHHHHhCCC
Q 047890 574 RELDQGADIVVATPGRLNDILEMKK---I---DFGQVSLL-VLDEADRMLDMG-------------FEPQIRKIVNEMPP 633 (1134)
Q Consensus 574 ~~l~~~~dIIVaTPerL~~lL~~~~---l---~l~~l~lV-VIDEAHrll~~g-------------f~~~i~~IL~~l~~ 633 (1134)
.....+..|+++|.+.|...+.... + ++.+..+| +-||||+|.... |...+...++..+
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nk- 154 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNK- 154 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCC-
Confidence 2234457899999999987764332 2 24444554 559999975421 3333333333333
Q ss_pred CceEEEEeccCch
Q 047890 634 HRQTLMYTATWPK 646 (1134)
Q Consensus 634 ~~qiLllSATl~~ 646 (1134)
..-+|.+|||++.
T Consensus 155 d~~~lef~at~~k 167 (812)
T COG3421 155 DNLLLEFSATIPK 167 (812)
T ss_pred CceeehhhhcCCc
Confidence 3347889999883
No 177
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.39 E-value=3.5e-06 Score=94.53 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHc----------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHH
Q 047890 480 PTPIQAQTWPIALQ----------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEA 549 (1134)
Q Consensus 480 prpiQ~eaI~~il~----------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el 549 (1134)
|...|.|+|-.+.+ ...+||-+.||.||--+..-.|+....+ ...++|+|+-+..|.....+.|
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~------Gr~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR------GRKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc------CCCceEEEECChhhhhHHHHHH
Confidence 67889988876652 3568888999999998766555554442 3347999999999999999999
Q ss_pred HHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc---ccC---------CCCeEEEEEcchhhhhc
Q 047890 550 NKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK---KID---------FGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 550 ~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~---~l~---------l~~l~lVVIDEAHrll~ 617 (1134)
+.++.. .+.+..+..-. .. . ...-...||++|+..|....... ... -+.-.+|||||||.+.+
T Consensus 112 ~DIG~~-~i~v~~l~~~~-~~-~--~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 112 RDIGAD-NIPVHPLNKFK-YG-D--IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKN 186 (303)
T ss_pred HHhCCC-cccceechhhc-cC-c--CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCC
Confidence 988755 44444433211 11 0 01123469999999887764211 111 11124899999999877
Q ss_pred cCch--------HHHHHHHHhCCCCceEEEEeccCchhHHHH
Q 047890 618 MGFE--------PQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651 (1134)
Q Consensus 618 ~gf~--------~~i~~IL~~l~~~~qiLllSATl~~~v~~l 651 (1134)
..-. ..+..+-+.++..+ +|.+|||...+++++
T Consensus 187 ~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~Nm 227 (303)
T PF13872_consen 187 LSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRNM 227 (303)
T ss_pred CCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCcee
Confidence 5421 23344555665555 999999977666655
No 178
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=98.36 E-value=1.3e-06 Score=96.44 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=19.8
Q ss_pred hHHHHHHHcCCCCCCHHHHHHHHHHHcC
Q 047890 467 PRVASMHSAGFSSPTPIQAQTWPIALQG 494 (1134)
Q Consensus 467 ~~l~~l~~~Gf~~prpiQ~eaI~~il~g 494 (1134)
.+++.|++.+|.-+.--|...-.++.++
T Consensus 7 ~lvdslk~l~~qg~~~k~~~lsral~ag 34 (465)
T KOG3973|consen 7 YLVDSLKALSFQGHCQKQENLSRALMAG 34 (465)
T ss_pred HHHHHHHHhccCCcccchhhHHHHHHcC
Confidence 3477778888888777777766666654
No 179
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.35 E-value=3.8e-06 Score=106.42 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=52.8
Q ss_pred cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 577 ~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
.....|+++||..|..-+-.+.+++..|..|||||||++........|.++.....+..-+.+||+.
T Consensus 5 y~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSds 71 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDN 71 (814)
T ss_pred hhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCC
Confidence 3446899999999988888899999999999999999987765555566666555555557777776
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.31 E-value=4.9e-06 Score=99.14 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=66.7
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 047890 471 SMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN 550 (1134)
Q Consensus 471 ~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~ 550 (1134)
.+...++.+|..-|..|+..+|...-.||++|.|+|||++....+++++++ ....|||++|+..-++|+.+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh------cCCceEEEcccchhHHHHHHHHH
Confidence 344567888999999999999999999999999999999988877777765 45589999999999999999988
Q ss_pred Hhc
Q 047890 551 KFG 553 (1134)
Q Consensus 551 kl~ 553 (1134)
+.+
T Consensus 476 ~tg 478 (935)
T KOG1802|consen 476 KTG 478 (935)
T ss_pred hcC
Confidence 754
No 181
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.28 E-value=2.6e-06 Score=103.97 Aligned_cols=42 Identities=12% Similarity=-0.052 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHH
Q 047890 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFI 517 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~ 517 (1134)
+.-+-+.+-.+.|+.++++..+++...|+++||.+..+-++.
T Consensus 403 gcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiae 444 (1282)
T KOG0921|consen 403 GCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAE 444 (1282)
T ss_pred cccchhHHHHHHHHHHhhccccccccceeccccccchHHHHH
Confidence 444556777777777777777777777888887665444443
No 182
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=98.27 E-value=1.1e-06 Score=102.54 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=4.5
Q ss_pred cccccCCCCCC
Q 047890 1105 VLLQLVDSSVT 1115 (1134)
Q Consensus 1105 ~~~p~~~~~~t 1115 (1134)
|--|+-+..+-
T Consensus 711 I~DPiSGGEVR 721 (757)
T KOG4368|consen 711 IQDPISGGEVR 721 (757)
T ss_pred ccCcccCcccc
Confidence 33344444433
No 183
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.23 E-value=4.7e-06 Score=89.76 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEccCCCchhHHHHHHHHHHHHHh-cCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 479 SPTPIQAQTWPIALQGRD-IVAIAKTGSGKTLGYLIPAFILLRQL-HNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grd-vLl~ApTGSGKTla~llpal~~L~~~-~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
+|.+.|++||..++.... ++|.+|.|+|||.+....+..++... ......+.++||+++++.-++++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 99999999999966444333332100 01123677999999999999999999888
No 184
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.16 E-value=1.8e-06 Score=107.36 Aligned_cols=259 Identities=22% Similarity=0.261 Sum_probs=150.2
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 479 SPTPIQAQTWPIALQ-GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~-grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
...|+|...+-.+.. ..++++.+|||+|||++|.+.++..+... ...++++|+|.++|+..-.+.+.+.....+
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-----p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-----PGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-----CCccEEEEcCCchhhcccccchhhhcccCC
Confidence 455677776544443 36789999999999999998888776543 446999999999999887777766544447
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHH--hcccCCCCeEEEEEcchhhhhccCchHHHHHHHHh-----
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE--MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE----- 630 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~--~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~----- 630 (1134)
++++-+.|+...+. .. ....+|+|+||+++..+.. .....+.+++++|+||.|++.+. ..+.++.+...
T Consensus 1002 ~k~ie~tgd~~pd~--~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDV--KA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCCh--hh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCc
Confidence 88888888776651 12 2347999999999988776 34455778999999999976543 33333322211
Q ss_pred --CCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecch-------hHHHHHHHHHHHHHhc
Q 047890 631 --MPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ-------MEKERRLQQILRAQER 701 (1134)
Q Consensus 631 --l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~-------~ek~~~L~~llk~~~~ 701 (1134)
+...++.+++|-- .....+++.++-.... ... ........+..++.-.+. ..+..-....++....
T Consensus 1078 ~~t~~~vr~~glsta-~~na~dla~wl~~~~~-~nf---~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTA-LANANDLADWLNIKDM-YNF---RPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred cccCcchhhhhHhhh-hhccHHHHHHhCCCCc-CCC---CcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 1223344444322 2333444444432222 111 011111111112111111 1122223445556667
Q ss_pred CCEEEEEeCcHHHH----HHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCC
Q 047890 702 GSRVIIFCSTKRLC----DQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSP 753 (1134)
Q Consensus 702 ~~kvLVF~nT~~~a----e~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~ 753 (1134)
.+.+|||+.+++.. ..|...+.. .-+...++-+ ..+-+.++...++...+
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 78999999886643 333333322 2233344433 55666666666654443
No 185
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.15 E-value=9.8e-06 Score=86.88 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC
Q 047890 479 SPTPIQAQTWPIALQGR--DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS 556 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~gr--dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~ 556 (1134)
+|++-|++|+..++... -++|.++.|+|||.+. ..+...+.. .+.++++++||...+..+.+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~------~g~~v~~~apT~~Aa~~L~~~~~------ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA------AGKRVIGLAPTNKAAKELREKTG------ 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH------TT--EEEEESSHHHHHHHHHHHT------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh------CCCeEEEECCcHHHHHHHHHhhC------
Confidence 37899999999998654 4677899999999763 334444443 35789999999888887666521
Q ss_pred CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc----CCCCeEEEEEcchhhhhccCchHHHHHHHHhCC
Q 047890 557 RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI----DFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632 (1134)
Q Consensus 557 ~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l----~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~ 632 (1134)
+.+..+. .++........ .+...++||||||-.+. ...+..++..+.
T Consensus 68 -~~a~Ti~------------------------~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~ 118 (196)
T PF13604_consen 68 -IEAQTIH------------------------SFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAK 118 (196)
T ss_dssp -S-EEEHH------------------------HHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-
T ss_pred -cchhhHH------------------------HHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHH
Confidence 2222211 11111111110 14566799999999654 455667777766
Q ss_pred C-CceEEEEecc
Q 047890 633 P-HRQTLMYTAT 643 (1134)
Q Consensus 633 ~-~~qiLllSAT 643 (1134)
. ..++|++--+
T Consensus 119 ~~~~klilvGD~ 130 (196)
T PF13604_consen 119 KSGAKLILVGDP 130 (196)
T ss_dssp T-T-EEEEEE-T
T ss_pred hcCCEEEEECCc
Confidence 5 5555555444
No 186
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.13 E-value=1.6e-05 Score=85.60 Aligned_cols=146 Identities=16% Similarity=0.256 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHH-------HHHHH
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQI-------QDEAN 550 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~-------~~el~ 550 (1134)
+-.+..|+.++..++...-+++.++.|||||+.++..++..+.. ....+++|+-|+.+..+.+ .+.+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-----g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-----GEYDKIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-----TS-SEEEEEE-S--TT----SS---------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-----CCCcEEEEEecCCCCccccccCCCCHHHHHH
Confidence 34688999999999988888999999999999999888887764 2455889888875431110 01111
Q ss_pred HhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHh
Q 047890 551 KFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE 630 (1134)
Q Consensus 551 kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~ 630 (1134)
-|..........+. .......+.....|-+.... ++. ...++ -.+||||||+.+. ...++.++..
T Consensus 78 p~~~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~----~iR--Grt~~-~~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 78 PYLRPIYDALEELF----GKEKLEELIQNGKIEIEPLA----FIR--GRTFD-NAFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp TTTHHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGG----GGT--T--B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh----ChHhHHHHhhcCeEEEEehh----hhc--Ccccc-ceEEEEecccCCC----HHHHHHHHcc
Confidence 11000000000000 01112222222334444321 111 11222 3799999999865 5678888988
Q ss_pred CCCCceEEEEecc
Q 047890 631 MPPHRQTLMYTAT 643 (1134)
Q Consensus 631 l~~~~qiLllSAT 643 (1134)
+..+.++|++--.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8888866666544
No 187
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.11 E-value=0.0001 Score=92.36 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 478 SSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
..+...|.+||..++.. ..+||.+|.|+|||.+....+..++. .+.+|||++||..-++++.+.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK-------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 45799999999999987 56788999999999876555544443 3558999999999999999888763
No 188
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.07 E-value=2.3e-06 Score=64.36 Aligned_cols=31 Identities=48% Similarity=0.816 Sum_probs=29.8
Q ss_pred CCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 22 LPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
||.+|+..+|.+ |.+||||.+|.+++||+|.
T Consensus 1 lp~gW~~~~~~~-g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPD-GRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCC-CCEEEEECCCCCEEcCCCC
Confidence 799999999999 9999999999999999995
No 189
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.6e-06 Score=85.50 Aligned_cols=41 Identities=37% Similarity=0.732 Sum_probs=36.7
Q ss_pred CCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 17 PDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
+++..||++|...++-++|.+||+|+|||..|||+|...+-
T Consensus 2 ~~~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~ 42 (163)
T KOG3259|consen 2 ADEEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSK 42 (163)
T ss_pred cccccCCchhheeccccCCCcceeccccchhhccCCCcccc
Confidence 46678999999999999999999999999999999985443
No 190
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.98 E-value=2e-05 Score=82.27 Aligned_cols=106 Identities=21% Similarity=0.323 Sum_probs=73.9
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcCCC---cEEEecCCCChhHHHHHHHHHhcCCCCeeeecc--cceeccccCc--ceEE
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGRNF---GAIAIHGDKSQGERDWVLNQFRSGKSPILVATD--VAARGLDIKD--IRVV 773 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~~~---~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd--vl~~GLDIp~--v~~V 773 (1134)
..+.+|||+++.+.++.+.+.+.... .+.++.. ...++.++++.|++++-.||+++. .+.+|||+++ +++|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 34799999999999999999986542 1223332 366888999999999999999998 9999999986 6679
Q ss_pred EeecCCCC-h-----------------------------hhHHHhhhccCcCCCcceeEEEeccc
Q 047890 774 INYDFPNG-V-----------------------------EDYVHRIGRTGRAGATGVAHTFFSEQ 808 (1134)
Q Consensus 774 I~~d~P~s-~-----------------------------~~yiQRiGRagR~GqkG~~ii~~~~~ 808 (1134)
|...+|.. + ....|.+||+-|..+.--++++++..
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 98887741 1 12248999999997776666666653
No 191
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.88 E-value=4.5e-05 Score=89.11 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=69.6
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHh
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~ 575 (1134)
-+||.+..|||||++++..+..+ .....+.++++||.+..|...+++.+.+-...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-----~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-----QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP-------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-----hccccCCceEEEEecchHHHHHHHHHhhhccc--------------------
Confidence 36788999999999866544433 11125668999999999999888888764200
Q ss_pred hcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC-------chHHHHHHHHh
Q 047890 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG-------FEPQIRKIVNE 630 (1134)
Q Consensus 576 l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g-------f~~~i~~IL~~ 630 (1134)
......+..+..++..+.........+++|||||||+|.... ..+.+..++..
T Consensus 58 --~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001233344444444333333456689999999999998732 23566666655
No 192
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.83 E-value=1.6e-06 Score=106.58 Aligned_cols=76 Identities=24% Similarity=0.300 Sum_probs=61.5
Q ss_pred HHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHh---cCCCCeeeecccceec
Q 047890 689 ERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFR---SGKSPILVATDVAARG 764 (1134)
Q Consensus 689 ~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~Fr---sGe~~VLVATdvl~~G 764 (1134)
...|...++.+ ..+.+||||..-...++.|...+........+.|..+..+|...+.+|+ +..+.+|++|.+.+.|
T Consensus 617 ~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 617 LTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 34444444444 4578999999999999999999976668899999999999999999999 3466789999877654
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.81 E-value=0.00021 Score=88.72 Aligned_cols=143 Identities=23% Similarity=0.241 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCc
Q 047890 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLS 559 (1134)
Q Consensus 480 prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~ 559 (1134)
..++|++|+...+..+-+||.++.|+|||.+....+.. +.+... .....+++++||-.-|..+.+.+........+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~-l~~~~~--~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAA-LIQLAD--GERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-HHHhcC--CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 36899999999999999999999999999874433322 222111 123579999999888888877766533221110
Q ss_pred eEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh------cccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCC
Q 047890 560 CTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM------KKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPP 633 (1134)
Q Consensus 560 v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~------~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~ 633 (1134)
+.. ......-..|..+|+..... .....-.+++|||||+-. .+ ...+..++..+++
T Consensus 230 ----------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM-vd---~~lm~~ll~al~~ 291 (615)
T PRK10875 230 ----------DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM-VD---LPMMARLIDALPP 291 (615)
T ss_pred ----------hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhc-cc---HHHHHHHHHhccc
Confidence 000 00111223444444332111 111223568999999995 33 4566778888888
Q ss_pred CceEEEEecc
Q 047890 634 HRQTLMYTAT 643 (1134)
Q Consensus 634 ~~qiLllSAT 643 (1134)
..++|++--.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8877777554
No 194
>PRK10536 hypothetical protein; Provisional
Probab=97.77 E-value=0.0004 Score=76.99 Aligned_cols=148 Identities=15% Similarity=0.160 Sum_probs=81.8
Q ss_pred HHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHH-------H
Q 047890 473 HSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQ-------I 545 (1134)
Q Consensus 473 ~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q-------~ 545 (1134)
...++.-.+..|...+.++.....+++.+++|+|||+.++..++..+.. ....+++|+-|+.+..+. +
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-----~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-----KDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-----CCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 3345666789999999999888888889999999999888777755532 123466666665432211 1
Q ss_pred HHHHHHhccCCCCceEEecCCCCCchhHHhhc--CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHH
Q 047890 546 QDEANKFGRSSRLSCTCLYGGAPKGPQLRELD--QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQ 623 (1134)
Q Consensus 546 ~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~--~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~ 623 (1134)
.+.+.-|....-.....+.+. ..+..+. ..-.|-|.. +.++.-.. + +-++||||||+.+. ...
T Consensus 128 ~eK~~p~~~pi~D~L~~~~~~----~~~~~~~~~~~~~Iei~~----l~ymRGrt--l-~~~~vIvDEaqn~~----~~~ 192 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRLGA----SFMQYCLRPEIGKVEIAP----FAYMRGRT--F-ENAVVILDEAQNVT----AAQ 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhCh----HHHHHHHHhccCcEEEec----HHHhcCCc--c-cCCEEEEechhcCC----HHH
Confidence 111111111100000000111 1111111 112344443 12232222 2 33799999999764 467
Q ss_pred HHHHHHhCCCCceEEEE
Q 047890 624 IRKIVNEMPPHRQTLMY 640 (1134)
Q Consensus 624 i~~IL~~l~~~~qiLll 640 (1134)
++.++..+..+.++|++
T Consensus 193 ~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 193 MKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHhhcCCCCEEEEe
Confidence 78888888877755544
No 195
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.76 E-value=0.00035 Score=86.58 Aligned_cols=143 Identities=20% Similarity=0.218 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCce
Q 047890 481 TPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSC 560 (1134)
Q Consensus 481 rpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v 560 (1134)
..+|++|+..++..+-+||.+..|+|||.+....+ ..+...... ....++++++||-.-+..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll-~~l~~~~~~-~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLL-LALVKQSPK-QGKLRIALAAPTGKAAARLAESLRKAVKNLAAA- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHH-HHHHHhccc-cCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-
Confidence 38999999999999999999999999998744333 333222111 113579999999888877777665532211110
Q ss_pred EEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHH------hcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCC
Q 047890 561 TCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE------MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH 634 (1134)
Q Consensus 561 ~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~------~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~ 634 (1134)
. .+.....+-..|..+|+.... ........+++||||||-. ++ ...+..++..++..
T Consensus 224 ---------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSM-vd---~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 ---------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASM-VD---LPLMAKLLKALPPN 286 (586)
T ss_pred ---------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEccccc-CC---HHHHHHHHHhcCCC
Confidence 0 000011223445444443321 1111233679999999994 33 44667788888888
Q ss_pred ceEEEEecc
Q 047890 635 RQTLMYTAT 643 (1134)
Q Consensus 635 ~qiLllSAT 643 (1134)
.++|++--.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 877766544
No 196
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=97.67 E-value=2.8e-05 Score=57.88 Aligned_cols=30 Identities=40% Similarity=0.788 Sum_probs=28.6
Q ss_pred CCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 23 PKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
|.+|+...|.+ |.+||||.+|+.|+||+|.
T Consensus 1 p~~W~~~~~~~-g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPD-GRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCC-CCEEEEECCCCCEeCCCCC
Confidence 68999999999 9999999999999999995
No 197
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.66 E-value=0.00088 Score=83.82 Aligned_cols=129 Identities=23% Similarity=0.217 Sum_probs=86.2
Q ss_pred CCCCCHHHHHHHHHHHcCCC-EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 477 FSSPTPIQAQTWPIALQGRD-IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 477 f~~prpiQ~eaI~~il~grd-vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
+..|...|++|+..++..+| .||.+=.|+|||.+...++-.++. .+.+||+.+=|.+-++++.-.|+++...
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-------~gkkVLLtsyThsAVDNILiKL~~~~i~ 739 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA-------LGKKVLLTSYTHSAVDNILIKLKGFGIY 739 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH-------cCCeEEEEehhhHHHHHHHHHHhccCcc
Confidence 45689999999999988766 566788999999885554444433 5779999999999999988888776432
Q ss_pred C-------CC----ceEEecCCC--CCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 556 S-------RL----SCTCLYGGA--PKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 556 ~-------~i----~v~~l~GG~--~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
. .+ .-.++..+. ...+.++.+.+...||.+|.--+.+.+ +..+.|+++|||||-.++
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccccccc
Confidence 1 00 001111111 122334455566789999864444333 345568999999998643
No 198
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.66 E-value=0.0012 Score=85.82 Aligned_cols=126 Identities=20% Similarity=0.171 Sum_probs=76.2
Q ss_pred cCCCCCCHHHHHHHHHHHcCCC-EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRD-IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grd-vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.|+ .|++-|++||..++.+++ ++|.+..|+|||.+ +-.+...++. .+.+|++++||-.-+..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~e------ 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA------AGYEVRGAALSGIAAENLEG------ 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH------cCCeEEEecCcHHHHHHHhh------
Confidence 344 599999999999998654 67889999999976 3334444432 46789999999665544322
Q ss_pred cCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhC-C
Q 047890 554 RSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM-P 632 (1134)
Q Consensus 554 ~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l-~ 632 (1134)
..++.. .|..+|+.-+......+...++|||||+-.+.. ..+..++... .
T Consensus 409 -~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~ 459 (988)
T PRK13889 409 -GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAAD 459 (988)
T ss_pred -ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhh
Confidence 111211 122222211112223355778999999995443 3444555433 3
Q ss_pred CCceEEEEecc
Q 047890 633 PHRQTLMYTAT 643 (1134)
Q Consensus 633 ~~~qiLllSAT 643 (1134)
...++||+--+
T Consensus 460 ~garvVLVGD~ 470 (988)
T PRK13889 460 AGAKVVLVGDP 470 (988)
T ss_pred CCCEEEEECCH
Confidence 45666666554
No 199
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.63 E-value=0.00013 Score=87.32 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 047890 479 SPTPIQAQTWPIALQGRD-IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN 550 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grd-vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~ 550 (1134)
.+.+-|++|+.++...++ .++.+|.|+|||.+....+..+++ .+.+|||++||++-++++.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk-------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK-------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-------cCCeEEEEcCchHHHHHHHHHhc
Confidence 478899999999998865 566799999999997777776666 46799999999999999998643
No 200
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.55 E-value=0.0005 Score=76.63 Aligned_cols=6 Identities=17% Similarity=0.297 Sum_probs=2.3
Q ss_pred CCHHHH
Q 047890 827 VPPEVR 832 (1134)
Q Consensus 827 lp~~l~ 832 (1134)
++.|-.
T Consensus 319 mpswqq 324 (465)
T KOG3973|consen 319 MPSWQQ 324 (465)
T ss_pred CCcHHH
Confidence 333433
No 201
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.53 E-value=0.00048 Score=85.48 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHcC----CCEEEEccCCCchhHHHHHHHHHHHHHhcCC-----------------C-----------
Q 047890 479 SPTPIQAQTWPIALQG----RDIVAIAKTGSGKTLGYLIPAFILLRQLHNN-----------------P----------- 526 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~g----rdvLl~ApTGSGKTla~llpal~~L~~~~~~-----------------~----------- 526 (1134)
+|++.|...+..++.+ .++|+..|||+|||++.|...+...+..+.. +
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 4899999887777754 6799999999999998765555444332200 0
Q ss_pred -------CCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 527 -------RNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 527 -------~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
-..++++|-+-|-+-..|+.+|+++....
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 12578888888989999999999987654
No 202
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.51 E-value=0.00092 Score=85.07 Aligned_cols=126 Identities=23% Similarity=0.191 Sum_probs=78.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
..+++.|++|+..+...+-+||.+..|+|||.+. ..++..+.... ....+++++||-.-|..+.+.+ +
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~----~~~~v~l~ApTg~AA~~L~e~~-------g 389 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG----GLLPVGLAAPTGRAAKRLGEVT-------G 389 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC----CCceEEEEeCchHHHHHHHHhc-------C
Confidence 4699999999999999899999999999999764 33334443211 1157889999977666543321 1
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHH-----hcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCC
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE-----MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP 632 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~-----~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~ 632 (1134)
+.. .|..+|+.+.. .........++||||||+.+- ...+..++..++
T Consensus 390 ~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~ 441 (720)
T TIGR01448 390 LTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALP 441 (720)
T ss_pred Ccc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCC
Confidence 111 11111111100 000112357899999999653 345567777788
Q ss_pred CCceEEEEecc
Q 047890 633 PHRQTLMYTAT 643 (1134)
Q Consensus 633 ~~~qiLllSAT 643 (1134)
...++|++--+
T Consensus 442 ~~~rlilvGD~ 452 (720)
T TIGR01448 442 DHARLLLVGDT 452 (720)
T ss_pred CCCEEEEECcc
Confidence 77777776554
No 203
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.46 E-value=0.00073 Score=73.65 Aligned_cols=132 Identities=22% Similarity=0.261 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHc---CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc-c
Q 047890 479 SPTPIQAQTWPIALQ---GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG-R 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~---grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~-~ 554 (1134)
-+|+.|.++...+.+ +.+.+++.-||.|||.+ ++|++.++.. ....-|.+++| ++|.+|.++.+..-+ .
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA-----dg~~LvrviVp-k~Ll~q~~~~L~~~lg~ 95 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA-----DGSRLVRVIVP-KALLEQMRQMLRSRLGG 95 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc-----CCCcEEEEEcC-HHHHHHHHHHHHHHHHH
Confidence 489999999999986 47899999999999987 6677665442 13346777787 589999988876532 2
Q ss_pred CCC--CceEEecCCCCCch----hH----HhhcCCCcEEEeChHHHHHHHHhc-------cc-----------CCCCeEE
Q 047890 555 SSR--LSCTCLYGGAPKGP----QL----RELDQGADIVVATPGRLNDILEMK-------KI-----------DFGQVSL 606 (1134)
Q Consensus 555 ~~~--i~v~~l~GG~~~~~----~l----~~l~~~~dIIVaTPerL~~lL~~~-------~l-----------~l~~l~l 606 (1134)
-.+ |...-+.-....+. .+ +.....-.|+++||+.++++.-.. .. .+.+...
T Consensus 96 l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~r 175 (229)
T PF12340_consen 96 LLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSR 175 (229)
T ss_pred HhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC
Confidence 222 22222222222221 11 122345679999999887652111 10 1223345
Q ss_pred EEEcchhhhhc
Q 047890 607 LVLDEADRMLD 617 (1134)
Q Consensus 607 VVIDEAHrll~ 617 (1134)
-|+||+|.++.
T Consensus 176 dilDEsDe~L~ 186 (229)
T PF12340_consen 176 DILDESDEILS 186 (229)
T ss_pred eEeECchhccC
Confidence 68899987664
No 204
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.45 E-value=0.0084 Score=75.85 Aligned_cols=78 Identities=23% Similarity=0.231 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
..|++-|++|+.. ....++|.|..|||||.+.+.-+..++.... .....+|+|+.|+..|..+.+.+.+......
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~---~~~~~IL~ltft~~AA~em~eRL~~~lg~~~ 269 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ---AQPEQILLLAFGRQAAEEMDERIRERLGTED 269 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC---CCHHHeEEEeccHHHHHHHHHHHHHhcCCCC
Confidence 4699999999853 3467899999999999986655555554321 1345899999999999999988876544333
Q ss_pred Cce
Q 047890 558 LSC 560 (1134)
Q Consensus 558 i~v 560 (1134)
+.+
T Consensus 270 v~v 272 (684)
T PRK11054 270 ITA 272 (684)
T ss_pred cEE
Confidence 443
No 205
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.38 E-value=0.0063 Score=79.70 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=78.8
Q ss_pred hHHHHHHHcCCCCCCHHHHHHHHHHHc-CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHH
Q 047890 467 PRVASMHSAGFSSPTPIQAQTWPIALQ-GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQI 545 (1134)
Q Consensus 467 ~~l~~l~~~Gf~~prpiQ~eaI~~il~-grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~ 545 (1134)
..+......+ ..|++-|++||..+.. ++-++|.+.-|+|||.+. -.+...+.. .+.+|+.++||-.-+..+
T Consensus 370 ~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~------~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 370 AVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA------AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred HHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH------cCCeEEEEcCcHHHHHHH
Confidence 3344433333 3599999999998865 455788899999999763 333444432 467899999996655544
Q ss_pred HHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHH
Q 047890 546 QDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIR 625 (1134)
Q Consensus 546 ~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~ 625 (1134)
.+. .++...++ .+|+..+......+...++||||||-.+. ...+.
T Consensus 442 ~e~-------~Gi~a~TI------------------------as~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~ 486 (1102)
T PRK13826 442 EKE-------AGIQSRTL------------------------SSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMA 486 (1102)
T ss_pred HHh-------hCCCeeeH------------------------HHHHhhhccCccCCCCCcEEEEECcccCC----HHHHH
Confidence 321 12222221 12211111122345567899999999543 33444
Q ss_pred HHHHhCC-CCceEEEEecc
Q 047890 626 KIVNEMP-PHRQTLMYTAT 643 (1134)
Q Consensus 626 ~IL~~l~-~~~qiLllSAT 643 (1134)
.++.... ...++|++--+
T Consensus 487 ~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 487 LFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHhcCCEEEEECCH
Confidence 5555543 45666666554
No 206
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.26 E-value=0.00072 Score=84.34 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=27.0
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
.++++|||||+|.|.... .+.+.++|+..+.+..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 467899999999876543 455666787776666444444
No 207
>PF13245 AAA_19: Part of AAA domain
Probab=97.23 E-value=0.001 Score=60.54 Aligned_cols=60 Identities=33% Similarity=0.357 Sum_probs=42.8
Q ss_pred HHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHH
Q 047890 487 TWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEA 549 (1134)
Q Consensus 487 aI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el 549 (1134)
||...+.+ .-++|.++.|||||.+.+-.+..++.... .. +..+|||+||+..++++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~--~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA--DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc--CC-CCeEEEECCCHHHHHHHHHHH
Confidence 45544444 44566999999999776665555553211 11 668999999999999988888
No 208
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.22 E-value=0.00062 Score=87.18 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=29.5
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
.++++|||||+|+|... ..+.|.++|+..+.++.+||++
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 57889999999988754 3556778888877777556554
No 209
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.19 E-value=0.0018 Score=63.85 Aligned_cols=24 Identities=33% Similarity=0.123 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFI 517 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~ 517 (1134)
++.++|.+++|+|||.++-..+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH
Confidence 456888999999999875544443
No 210
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.15 E-value=0.0051 Score=78.69 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHH
Q 047890 479 SPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQ 546 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~ 546 (1134)
.|++-|++|+..++.. +-++|.+..|+|||.+.- .++..++. .+.++++++||-.-+..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh------CCCeEEEEeCcHHHHHHHH
Confidence 5899999999999875 567889999999997633 23333332 3678999999966555443
No 211
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.11 E-value=0.00026 Score=80.09 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=17.1
Q ss_pred EcccHHHHHHHHHHHHHhccCCCCceEE
Q 047890 535 LAPTRELATQIQDEANKFGRSSRLSCTC 562 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~~i~v~~ 562 (1134)
|.|. +--+|++..|..|++...+.+..
T Consensus 15 isps-at~dqm~tlFg~lGkI~elrlyp 41 (479)
T KOG4676|consen 15 ISPS-ATKDQMQTLFGNLGKIPELRLYP 41 (479)
T ss_pred cCch-hhHHHHHHHHhhccccccccccC
Confidence 4453 56678888888887655554433
No 212
>PRK06526 transposase; Provisional
Probab=97.05 E-value=0.0022 Score=71.61 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCC
Q 047890 489 PIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAP 568 (1134)
Q Consensus 489 ~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~ 568 (1134)
.++..+.++|+++++|+|||..+...+...+. .+.+|+++..+ +|+.++.... . .
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~-------~g~~v~f~t~~-~l~~~l~~~~----~----------~--- 147 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQ-------AGHRVLFATAA-QWVARLAAAH----H----------A--- 147 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHH-------CCCchhhhhHH-HHHHHHHHHH----h----------c---
Confidence 44445679999999999999876655554443 34466664432 4444332110 0 0
Q ss_pred CchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC-chHHHHHHHHhCCCCceEEEEeccCchh
Q 047890 569 KGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG-FEPQIRKIVNEMPPHRQTLMYTATWPKD 647 (1134)
Q Consensus 569 ~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g-f~~~i~~IL~~l~~~~qiLllSATl~~~ 647 (1134)
.+ +...+. .+.++++|||||+|.+.... ....+..+++.......+|+.|.....+
T Consensus 148 ----------------~~---~~~~l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 148 ----------------GR---LQAELV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ----------------Cc---HHHHHH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 01 111111 12357899999999764322 2334556655433334477777775443
No 213
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.05 E-value=0.0049 Score=60.49 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
+..+++.+++|+|||..+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~ 38 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA 38 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 57799999999999975443
No 214
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.02 E-value=0.0019 Score=82.84 Aligned_cols=146 Identities=21% Similarity=0.104 Sum_probs=90.1
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHH-----------hcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEE
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQ-----------LHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTC 562 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~-----------~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~ 562 (1134)
|++++++.++|.|||.+-+...+..+-. ...+......+|||||. ++..||..|+.+..... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 4678999999999999866554433211 11122234578999996 99999999999987553 55544
Q ss_pred ecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc--------------C----CCCeE--EEEEcchhhhhccCchH
Q 047890 563 LYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI--------------D----FGQVS--LLVLDEADRMLDMGFEP 622 (1134)
Q Consensus 563 l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l--------------~----l~~l~--lVVIDEAHrll~~gf~~ 622 (1134)
..|=.............+|||++|++.|..-+..... . |-.+. -||+|||+.+-. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 4442111111112233589999999999776532211 0 00111 389999996554 344
Q ss_pred HHHHHHHhCCCCceEEEEeccC
Q 047890 623 QIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 623 ~i~~IL~~l~~~~qiLllSATl 644 (1134)
...+++..+... .+-++|+|.
T Consensus 530 ~~a~M~~rL~~i-n~W~VTGTP 550 (1394)
T KOG0298|consen 530 AAAEMVRRLHAI-NRWCVTGTP 550 (1394)
T ss_pred HHHHHHHHhhhh-ceeeecCCc
Confidence 455555555433 378899994
No 215
>PRK08181 transposase; Validated
Probab=97.02 E-value=0.008 Score=67.76 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=68.4
Q ss_pred CCHHHHHHHH----HHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 480 PTPIQAQTWP----IALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 480 prpiQ~eaI~----~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
+...|..++. ++..++++++.+++|+|||-.+...+...++ .+.+|+++. ..+|+..+......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~-------~g~~v~f~~-~~~L~~~l~~a~~~---- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE-------NGWRVLFTR-TTDLVQKLQVARRE---- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH-------cCCceeeee-HHHHHHHHHHHHhC----
Confidence 4567776663 4456789999999999999665544444443 344566554 34565554322100
Q ss_pred CCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCc-hHHHHHHHHhCCCC
Q 047890 556 SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGF-EPQIRKIVNEMPPH 634 (1134)
Q Consensus 556 ~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf-~~~i~~IL~~l~~~ 634 (1134)
.+...+++. +.++++|||||.+.+....+ ...+..+++.....
T Consensus 156 -----------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~ 199 (269)
T PRK08181 156 -----------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYER 199 (269)
T ss_pred -----------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC
Confidence 011112222 23678999999997644322 34556666654333
Q ss_pred ceEEEEeccCchhH
Q 047890 635 RQTLMYTATWPKDV 648 (1134)
Q Consensus 635 ~qiLllSATl~~~v 648 (1134)
..+|+.|-..+.+.
T Consensus 200 ~s~IiTSN~~~~~w 213 (269)
T PRK08181 200 RSILITANQPFGEW 213 (269)
T ss_pred CCEEEEcCCCHHHH
Confidence 45666666544433
No 216
>PRK04296 thymidine kinase; Provisional
Probab=97.00 E-value=0.0015 Score=69.78 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=56.9
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHh
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~ 575 (1134)
-+|+.+++|+|||..++-.+..+.. .+.+++|+.|...-.. ....+....++.. .
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~-------~g~~v~i~k~~~d~~~----~~~~i~~~lg~~~---------~----- 58 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE-------RGMKVLVFKPAIDDRY----GEGKVVSRIGLSR---------E----- 58 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-------cCCeEEEEeccccccc----cCCcEecCCCCcc---------c-----
Confidence 3678899999999876554444333 4568888866311000 0011111111110 0
Q ss_pred hcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 576 l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
.+.+.....+++.+.. ...++++|||||+|.+. ...+..++..+...-..+++++-
T Consensus 59 -----~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 -----AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -----ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0223444455555543 34578899999998642 23355555553333334555544
No 217
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.97 E-value=0.0009 Score=75.68 Aligned_cols=123 Identities=20% Similarity=0.094 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCc
Q 047890 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLS 559 (1134)
Q Consensus 480 prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~ 559 (1134)
|++-|.++|.. ....++|.|..|||||.+.+.-++.++.... ....++|||+.|+..+..+.+.+.+.+......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~ 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG---VPPERILVLTFTNAAAQEMRERIRELLEEEQQE 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS---STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc---CChHHheecccCHHHHHHHHHHHHHhcCccccc
Confidence 57889999987 6788999999999999987666666665432 234579999999999999999988864332110
Q ss_pred eEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCC--CeEEEEEcchh
Q 047890 560 CTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFG--QVSLLVLDEAD 613 (1134)
Q Consensus 560 v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~--~l~lVVIDEAH 613 (1134)
. ............-..+.|.|...+...+-....... .-.+-|+|+..
T Consensus 76 ~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 S------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp C------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 000011111222356889999888664432221111 22456777776
No 218
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.94 E-value=0.1 Score=65.78 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=52.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh---HHhhc-CCCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ---LRELD-QGADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~---l~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
...+||+|+|+.-+..+++.|.+. ++.+.+++++...... +..+. ...+||||| +.+ ...+++.++
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~-arGIDip~V 314 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVA-ARGLDVERI 314 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chH-hcCCCcccC
Confidence 347999999999999999888764 4678888888765443 23333 347999999 333 456788889
Q ss_pred EEEEEc
Q 047890 605 SLLVLD 610 (1134)
Q Consensus 605 ~lVVID 610 (1134)
++||.-
T Consensus 315 ~~VI~~ 320 (629)
T PRK11634 315 SLVVNY 320 (629)
T ss_pred CEEEEe
Confidence 988753
No 219
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.90 E-value=0.0049 Score=70.57 Aligned_cols=144 Identities=19% Similarity=0.285 Sum_probs=83.0
Q ss_pred cCCCCCCHHHHHHHHHHHcCC--CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 475 AGFSSPTPIQAQTWPIALQGR--DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~gr--dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
.|+.-..-.|.-|+..++... -|.+.+..|||||+.++.+.+...... ....++||.=|+..+-+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~----~~y~KiiVtRp~vpvG~dI------- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER----KRYRKIIVTRPTVPVGEDI------- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH----hhhceEEEecCCcCccccc-------
Confidence 477777888999999998764 467789999999998887766533211 2345788887875443221
Q ss_pred ccCCCCceEEecCCCC--CchhHHhhcCCCcEE----EeChHHHHHHHHhcccCCCCe----------EEEEEcchhhhh
Q 047890 553 GRSSRLSCTCLYGGAP--KGPQLRELDQGADIV----VATPGRLNDILEMKKIDFGQV----------SLLVLDEADRML 616 (1134)
Q Consensus 553 ~~~~~i~v~~l~GG~~--~~~~l~~l~~~~dII----VaTPerL~~lL~~~~l~l~~l----------~lVVIDEAHrll 616 (1134)
..+=|..+ ...++..+...-.++ =++-+.|..++....+.+..+ .+||||||+.|-
T Consensus 293 --------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT 364 (436)
T COG1875 293 --------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT 364 (436)
T ss_pred --------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC
Confidence 11111100 001111111110111 112334444444444332222 489999999865
Q ss_pred ccCchHHHHHHHHhCCCCceEEEEe
Q 047890 617 DMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 617 ~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
...++.|+.......+||++.
T Consensus 365 ----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ----HHHHHHHHHhccCCCEEEEcC
Confidence 567888888888888666654
No 220
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.82 E-value=0.0076 Score=71.18 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 476 GFSSPTPIQAQTWPIAL----QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il----~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
-|...+|.|-+-...+. .+.++|+..|+|+|||++.+-.++.+....++ ...++|+.+-|..-++....|++.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~---~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD---EHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc---ccceEEEecCcchHHHHHHHHHHH
Confidence 34556777766544433 35689999999999999876666655444432 455788888776666666666655
Q ss_pred h
Q 047890 552 F 552 (1134)
Q Consensus 552 l 552 (1134)
+
T Consensus 90 l 90 (755)
T KOG1131|consen 90 L 90 (755)
T ss_pred H
Confidence 4
No 221
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.78 E-value=0.0038 Score=77.11 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=29.7
Q ss_pred CCeEEEEEcchhhhhccC-chHHHHHHHHhCCC-CceEEEEeccCchhHH
Q 047890 602 GQVSLLVLDEADRMLDMG-FEPQIRKIVNEMPP-HRQTLMYTATWPKDVR 649 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~g-f~~~i~~IL~~l~~-~~qiLllSATl~~~v~ 649 (1134)
.++++|||||+|.+.... ....+..+++.+.. ..++|+.|-..+.++.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 357899999999886543 34556666666544 3456655544444443
No 222
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0048 Score=72.40 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
+..+++++|||+|||.++...+..++... ...+|.+|+ +...-.--.+.++.|+...++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~----------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-----GASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA----------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEe-cccccccHHHHHHHHHHHcCCceEe-----------
Confidence 35688899999999998766555443221 112444443 2222111223344443333333322
Q ss_pred HhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc-CchHHHHHHHHhCCCCceEEEEeccCchhH-HHH
Q 047890 574 RELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATWPKDV-RKI 651 (1134)
Q Consensus 574 ~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~~qiLllSATl~~~v-~~l 651 (1134)
+-++..|...+. .+.+.++|+||++-+.... .....+..+.........+|+++||...+. .++
T Consensus 200 ----------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 200 ----------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ----------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 223333333222 2346689999999754321 122333333222233345788999975444 344
Q ss_pred HHhh
Q 047890 652 ASDL 655 (1134)
Q Consensus 652 ~~~~ 655 (1134)
+..|
T Consensus 266 i~~f 269 (374)
T PRK14722 266 VQAY 269 (374)
T ss_pred HHHH
Confidence 4444
No 223
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.019 Score=67.97 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=69.4
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEE-EEccc-HHHHHHHHHHHHHhccCCCCceEEecCCCCCchh
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVL-VLAPT-RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ 572 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvL-VLvPT-reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~ 572 (1134)
..++++++||+|||.++.-.+..+..... ..+.+|. |-+.+ +.-+.. .+..|+...++.+.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~---~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~---------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD---DKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA---------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc---cCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe----------
Confidence 45788999999999987655544332110 1233444 44444 222222 244444333443221
Q ss_pred HHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC-chHHHHHHHHhCCCC-ceEEEEeccCch-hHH
Q 047890 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG-FEPQIRKIVNEMPPH-RQTLMYTATWPK-DVR 649 (1134)
Q Consensus 573 l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g-f~~~i~~IL~~l~~~-~qiLllSATl~~-~v~ 649 (1134)
+-++..+...+.. +.++++||||++.++.... ....+..++...... ..+|.+|||... ++.
T Consensus 239 -----------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 239 -----------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred -----------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 2234444444432 3578999999999875321 224555566655433 457889999753 334
Q ss_pred HHHHhh
Q 047890 650 KIASDL 655 (1134)
Q Consensus 650 ~l~~~~ 655 (1134)
+++..+
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 444444
No 224
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.71 E-value=0.00085 Score=76.07 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.1
Q ss_pred hHHHhhhc
Q 047890 784 DYVHRIGR 791 (1134)
Q Consensus 784 ~yiQRiGR 791 (1134)
..++..||
T Consensus 204 halr~~gr 211 (479)
T KOG4676|consen 204 HALRSHGR 211 (479)
T ss_pred HHHHhcch
Confidence 33333343
No 225
>PRK14974 cell division protein FtsY; Provisional
Probab=96.70 E-value=0.016 Score=67.38 Aligned_cols=130 Identities=25% Similarity=0.336 Sum_probs=75.7
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc-c--HHHHHHHHHHHHHhccCCCCceEEecCCCCCchh
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP-T--RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ 572 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP-T--reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~ 572 (1134)
-+++++++|+|||.+....+..+ .. .+.+++++.. + ..-++||......++ +.+.....+..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l-~~------~g~~V~li~~Dt~R~~a~eqL~~~a~~lg----v~v~~~~~g~d---- 206 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYL-KK------NGFSVVIAAGDTFRAGAIEQLEEHAERLG----VKVIKHKYGAD---- 206 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-HH------cCCeEEEecCCcCcHHHHHHHHHHHHHcC----CceecccCCCC----
Confidence 36678999999998866555433 32 3446665553 2 355566665555543 32221111111
Q ss_pred HHhhcCCCcEEEeChHH-HHHHHHhcccCCCCeEEEEEcchhhhh-ccCchHHHHHHHHhCCCCceEEEEeccCchhHHH
Q 047890 573 LRELDQGADIVVATPGR-LNDILEMKKIDFGQVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650 (1134)
Q Consensus 573 l~~l~~~~dIIVaTPer-L~~lL~~~~l~l~~l~lVVIDEAHrll-~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~ 650 (1134)
|.. +.+.+... ....+++||||++.++. +..+...+..+...+.+...++.++||...+..+
T Consensus 207 --------------p~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~ 270 (336)
T PRK14974 207 --------------PAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE 270 (336)
T ss_pred --------------HHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH
Confidence 111 12222211 12356799999999875 3345667777777777777789999998766666
Q ss_pred HHHhhc
Q 047890 651 IASDLL 656 (1134)
Q Consensus 651 l~~~~l 656 (1134)
.++.+.
T Consensus 271 ~a~~f~ 276 (336)
T PRK14974 271 QAREFN 276 (336)
T ss_pred HHHHHH
Confidence 665553
No 226
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.64 E-value=0.0029 Score=61.35 Aligned_cols=41 Identities=29% Similarity=0.207 Sum_probs=25.5
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL 541 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL 541 (1134)
+..+++.+++|+|||..+...+..+.. ....++++......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~-------~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP-------PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC-------CCCCEEEECCEEcc
Confidence 456899999999999875443332211 11357777776433
No 227
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.62 E-value=0.049 Score=76.34 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC
Q 047890 479 SPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS 556 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~ 556 (1134)
.|++-|++|+..++.. +-+||.+..|+|||.+ +-.++..++. .+..|++++||-.-+..+.+.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~~g~~---- 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE------QGYEIQIITAGSLSAQELRQKIPRL---- 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHhcch----
Confidence 5899999999999876 5678889999999976 3333444432 4678999999977666655543211
Q ss_pred CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhC-CCCc
Q 047890 557 RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM-PPHR 635 (1134)
Q Consensus 557 ~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l-~~~~ 635 (1134)
... ....+..+... ....|...|+ .....+...++||||||-.+. ...+..++... ..+.
T Consensus 498 ---A~T------i~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 498 ---AST------FITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNS 558 (1960)
T ss_pred ---hhh------HHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCC
Confidence 000 01111111111 1112222222 122334577899999999654 34555666544 3567
Q ss_pred eEEEEecc
Q 047890 636 QTLMYTAT 643 (1134)
Q Consensus 636 qiLllSAT 643 (1134)
++||+--+
T Consensus 559 rvVlvGD~ 566 (1960)
T TIGR02760 559 KLILLNDS 566 (1960)
T ss_pred EEEEEcCh
Confidence 78877665
No 228
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.60 E-value=0.0015 Score=81.45 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=27.1
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
+.+.++|||||+|.|... ....+.++++..+..+.+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 356789999999976543 2345667777766666555544
No 229
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.57 E-value=0.027 Score=62.61 Aligned_cols=124 Identities=23% Similarity=0.262 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHc--------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 047890 479 SPTPIQAQTWPIALQ--------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN 550 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~--------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~ 550 (1134)
..+..|+.++..+.. ...+|+.+++|+|||..+...+..++. .+..|+|+. ..+|...+...+.
T Consensus 76 ~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~-------~g~~v~~it-~~~l~~~l~~~~~ 147 (244)
T PRK07952 76 VECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL-------RGKSVLIIT-VADIMSAMKDTFS 147 (244)
T ss_pred CCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEE-HHHHHHHHHHHHh
Confidence 345667767655553 146899999999999765554444433 345666663 3344433332221
Q ss_pred HhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchH-HHHHHHH
Q 047890 551 KFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEP-QIRKIVN 629 (1134)
Q Consensus 551 kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~-~i~~IL~ 629 (1134)
. . + .+.+.+++. +.++++|||||++......|.. .+..|++
T Consensus 148 ~---~----------~------------------~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~ 189 (244)
T PRK07952 148 N---S----------E------------------TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVD 189 (244)
T ss_pred h---c----------c------------------ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 0 0 0 011122222 3468899999999876544443 4455655
Q ss_pred hC-CCCceEEEEeccCchhH
Q 047890 630 EM-PPHRQTLMYTATWPKDV 648 (1134)
Q Consensus 630 ~l-~~~~qiLllSATl~~~v 648 (1134)
.- .....+|+.|---..++
T Consensus 190 ~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 190 RRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred HHHhCCCCEEEeCCCCHHHH
Confidence 42 23445666666543333
No 230
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.0041 Score=76.84 Aligned_cols=41 Identities=22% Similarity=0.422 Sum_probs=28.7
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEec
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTA 642 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSA 642 (1134)
..+++++||||+|.|....+ +.+.++|+.-+.++.+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 45688999999998865543 556667777666765555543
No 231
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.49 E-value=0.027 Score=56.89 Aligned_cols=38 Identities=32% Similarity=0.360 Sum_probs=25.3
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL 541 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL 541 (1134)
++|.+++|+|||..+...+..... .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-------cCCEEEEEECCcch
Confidence 688999999999876554444332 34567777665343
No 232
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.46 E-value=0.0048 Score=66.33 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=67.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEE-ccc-H-HHHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL-APT-R-ELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVL-vPT-r-eLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
+++++|||+|||.+..-.+..+..+ +.++.+| +.+ | .=.+| ++.+....++.+.......+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-------~~~v~lis~D~~R~ga~eQ----L~~~a~~l~vp~~~~~~~~~----- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-------GKKVALISADTYRIGAVEQ----LKTYAEILGVPFYVARTESD----- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEESTSSTHHHHH----HHHHHHHHTEEEEESSTTSC-----
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-------cccceeecCCCCCccHHHH----HHHHHHHhccccchhhcchh-----
Confidence 6788999999999977666555432 3344444 433 2 22233 33333222333322221111
Q ss_pred HhhcCCCcEEEeChHH-HHHHHHhcccCCCCeEEEEEcchhhhhc-cCchHHHHHHHHhCCCCceEEEEeccCchhHHHH
Q 047890 574 RELDQGADIVVATPGR-LNDILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651 (1134)
Q Consensus 574 ~~l~~~~dIIVaTPer-L~~lL~~~~l~l~~l~lVVIDEAHrll~-~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l 651 (1134)
|.. +.+.++ .+..+++++|+||-+-+... ......+.+++..+.+..-++.++||...+..+.
T Consensus 68 -------------~~~~~~~~l~--~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 68 -------------PAEIAREALE--KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp -------------HHHHHHHHHH--HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH
T ss_pred -------------hHHHHHHHHH--HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH
Confidence 111 112222 12234678999999876432 2245566677777766666899999986655444
Q ss_pred HHhh
Q 047890 652 ASDL 655 (1134)
Q Consensus 652 ~~~~ 655 (1134)
+..+
T Consensus 133 ~~~~ 136 (196)
T PF00448_consen 133 ALAF 136 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 233
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.40 E-value=0.0086 Score=67.36 Aligned_cols=66 Identities=20% Similarity=0.391 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCeeeecccceeccccCcc--------eEEEeecCCCChhhHHHhhhccCcCCCc-ceeEEEecc
Q 047890 742 WVLNQFRSGKSPILVATDVAARGLDIKDI--------RVVINYDFPNGVEDYVHRIGRTGRAGAT-GVAHTFFSE 807 (1134)
Q Consensus 742 ~il~~FrsGe~~VLVATdvl~~GLDIp~v--------~~VI~~d~P~s~~~yiQRiGRagR~Gqk-G~~ii~~~~ 807 (1134)
...+.|.+|+.+|+|.|++++.||.+... .+-|.+.+||+.+..+|.+||+.|.++. ...|.++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 45679999999999999999999998542 3567789999999999999999999984 455555544
No 234
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.036 Score=65.27 Aligned_cols=129 Identities=21% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE-Eccc-H-HHHHHHHHHHHHhccCCCCceEEecCCCCCch
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV-LAPT-R-ELATQIQDEANKFGRSSRLSCTCLYGGAPKGP 571 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLV-LvPT-r-eLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~ 571 (1134)
+.++++++||+|||.++...+..+.. .+.++.+ -+.+ + ..++||....+. .++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~-------~GkkVglI~aDt~RiaAvEQLk~yae~----lgipv----------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG-------KKKTVGFITTDHSRIGTVQQLQDYVKT----IGFEV----------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH-------cCCcEEEEecCCcchHHHHHHHHHhhh----cCCcE-----------
Confidence 45788999999999987766654432 3344544 4433 2 344555433332 12221
Q ss_pred hHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc-CchHHHHHHHHhCCCCceEEEEeccCc-hhHH
Q 047890 572 QLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATWP-KDVR 649 (1134)
Q Consensus 572 ~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~~qiLllSATl~-~~v~ 649 (1134)
+++.++..|.+.+..-.. ..++++||||-+=+.... .....+..++....+..-+|.+|||.. .+..
T Consensus 300 ----------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~ 368 (436)
T PRK11889 300 ----------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 368 (436)
T ss_pred ----------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH
Confidence 223456666665532211 125789999998764432 123445555555444544677898754 4556
Q ss_pred HHHHhhc
Q 047890 650 KIASDLL 656 (1134)
Q Consensus 650 ~l~~~~l 656 (1134)
++++.|-
T Consensus 369 ~i~~~F~ 375 (436)
T PRK11889 369 EIITNFK 375 (436)
T ss_pred HHHHHhc
Confidence 6666553
No 235
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.33 E-value=0.008 Score=70.73 Aligned_cols=60 Identities=27% Similarity=0.310 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHH------HcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHH
Q 047890 479 SPTPIQAQTWPIA------LQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQI 545 (1134)
Q Consensus 479 ~prpiQ~eaI~~i------l~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~ 545 (1134)
.|+.-|++++..+ .++..++|.++-|+|||.++- .+...++ ..+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLR------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhc------cccceEEEecchHHHHHhc
Confidence 3678899998888 566789999999999997532 2223332 1456899999985544444
No 236
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.30 E-value=0.018 Score=60.48 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=36.1
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
+||.+++|+|||..++-.++..++ .+.+++|++- .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-------~g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-------RGEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-------CCCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 688999999999887665555554 4567888875 466777777777664
No 237
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.26 E-value=0.016 Score=69.87 Aligned_cols=113 Identities=16% Similarity=0.286 Sum_probs=59.9
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
+.+++.+++|+|||-.+...+..++. .+.+++++.. ..+...+...+.. +
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~-------~~~~v~yi~~-~~f~~~~~~~l~~--------------~-------- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE-------SGGKILYVRS-ELFTEHLVSAIRS--------------G-------- 191 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH-------cCCCEEEeeH-HHHHHHHHHHHhc--------------c--------
Confidence 45899999999999764433333322 2456777664 3454433333221 0
Q ss_pred hhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC-chHHHHHHHHhCC-CCceEEEEeccCchhHHHHH
Q 047890 575 ELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG-FEPQIRKIVNEMP-PHRQTLMYTATWPKDVRKIA 652 (1134)
Q Consensus 575 ~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g-f~~~i~~IL~~l~-~~~qiLllSATl~~~v~~l~ 652 (1134)
..+.+... +..+++|||||+|.+.... ....+..+++.+. ...++|+.|-+.+.++..+.
T Consensus 192 -----------~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 192 -----------EMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAME 253 (445)
T ss_pred -----------hHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhH
Confidence 00111111 2367899999999876533 2344555555432 34445555544455554443
Q ss_pred Hhh
Q 047890 653 SDL 655 (1134)
Q Consensus 653 ~~~ 655 (1134)
..+
T Consensus 254 ~rL 256 (445)
T PRK12422 254 ERL 256 (445)
T ss_pred HHH
Confidence 333
No 238
>PRK08116 hypothetical protein; Validated
Probab=96.26 E-value=0.078 Score=59.88 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHH-----------cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHH
Q 047890 480 PTPIQAQTWPIAL-----------QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDE 548 (1134)
Q Consensus 480 prpiQ~eaI~~il-----------~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~e 548 (1134)
.++-+..++..+. .+..+++.+++|+|||..+...+-.++. .+..++++. ..+|+..+...
T Consensus 89 ~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~-------~~~~v~~~~-~~~ll~~i~~~ 160 (268)
T PRK08116 89 FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIE-------KGVPVIFVN-FPQLLNRIKST 160 (268)
T ss_pred CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEE-HHHHHHHHHHH
Confidence 3566666554433 1134899999999999765544333333 234555554 44565554443
Q ss_pred HHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC-chHHHHHH
Q 047890 549 ANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG-FEPQIRKI 627 (1134)
Q Consensus 549 l~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g-f~~~i~~I 627 (1134)
+.... .. +...+++. +.++++|||||++...... ....+..|
T Consensus 161 ~~~~~---------------~~---------------~~~~~~~~-------l~~~dlLviDDlg~e~~t~~~~~~l~~i 203 (268)
T PRK08116 161 YKSSG---------------KE---------------DENEIIRS-------LVNADLLILDDLGAERDTEWAREKVYNI 203 (268)
T ss_pred Hhccc---------------cc---------------cHHHHHHH-------hcCCCEEEEecccCCCCCHHHHHHHHHH
Confidence 32110 00 01111221 2366799999996422211 23445556
Q ss_pred HHhC-CCCceEEEEeccCchhHH
Q 047890 628 VNEM-PPHRQTLMYTATWPKDVR 649 (1134)
Q Consensus 628 L~~l-~~~~qiLllSATl~~~v~ 649 (1134)
++.. .....+|+.|...+.++.
T Consensus 204 in~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 204 IDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred HHHHHHCCCCEEEECCCCHHHHH
Confidence 6643 334456666665544443
No 239
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.0067 Score=74.33 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=28.2
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
.+++++||||+|.|.... .+.+.++++..+.++.+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 467899999999876543 455667888877776555544
No 240
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=96.17 E-value=0.005 Score=75.40 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHcC----------CCEEEEcc--CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHH
Q 047890 479 SPTPIQAQTWPIALQG----------RDIVAIAK--TGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQ 546 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~g----------rdvLl~Ap--TGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~ 546 (1134)
.+...|.+||-.+..- -.+||-+. .|-|.|++.++. -.+|+ ..+++|++.-+..|--...
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIf-eNyLk-------GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIF-ENYLK-------GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEe-hhhhc-------ccceeEEEEeccccccchh
Confidence 4677799998776642 23566544 455556655431 23333 4568999999989988888
Q ss_pred HHHHHhccCCCCceEEecCC----CCCchhHHhhcCCCcEEEeChHHHHHHHHhc--cc----------CCCC-eEEEEE
Q 047890 547 DEANKFGRSSRLSCTCLYGG----APKGPQLRELDQGADIVVATPGRLNDILEMK--KI----------DFGQ-VSLLVL 609 (1134)
Q Consensus 547 ~el~kl~~~~~i~v~~l~GG----~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~--~l----------~l~~-l~lVVI 609 (1134)
..|..++.. +|.+..+..= .+.++ -..+ .-.||++|+-.|+---... +. .-.+ -++|||
T Consensus 336 RDL~DigA~-~I~V~alnK~KYakIss~e-n~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 336 RDLRDIGAT-GIAVHALNKFKYAKISSKE-NTNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hchhhcCCC-Cccceehhhcccccccccc-cCCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 888877543 4555444210 00000 0011 1369999998775432110 00 0011 258999
Q ss_pred cchhhhhcc---------CchHHHHHHHHhCCCCceEEEEeccCc
Q 047890 610 DEADRMLDM---------GFEPQIRKIVNEMPPHRQTLMYTATWP 645 (1134)
Q Consensus 610 DEAHrll~~---------gf~~~i~~IL~~l~~~~qiLllSATl~ 645 (1134)
||||+..+. .....+..+-..++.. .++..|||-.
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~A-RVVYASATGA 455 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNA-RVVYASATGA 455 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCCCc-eEEEeeccCC
Confidence 999986552 1334555555566554 5999999943
No 241
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.0069 Score=75.43 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=26.1
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
..++++||||+|.|.... .+.+.++++..+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a-~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA-FNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHhcccCCCCeEEEEEE
Confidence 468999999999876544 344556666655665454444
No 242
>PHA02533 17 large terminase protein; Provisional
Probab=96.09 E-value=0.041 Score=67.83 Aligned_cols=123 Identities=15% Similarity=0.051 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|.|+|++.+..+..++-.++..+=..|||.++.+.++..+.. ..+..+++++++..-|..+++.++.+......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-----~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-----NKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-----CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 4899999999888766767787888999998876544433321 13459999999999999988888765432210
Q ss_pred --ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 559 --SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 559 --~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
...+.. . ......+.++..|.+.|-. .....=..++++||||+|.+.+
T Consensus 134 l~~~~i~~-~---~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 134 FLQPGIVE-W---NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred Hhhcceee-c---CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC
Confidence 100000 0 0111122345555444421 1112223567899999997654
No 243
>PRK06893 DNA replication initiation factor; Validated
Probab=96.06 E-value=0.011 Score=64.87 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=29.2
Q ss_pred CCeEEEEEcchhhhhcc-CchHHHHHHHHhCCC-CceEEEEeccCch
Q 047890 602 GQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPP-HRQTLMYTATWPK 646 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~-~~qiLllSATl~~ 646 (1134)
.++++|||||+|.+... .+...+..+++.+.. ...+|++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 36689999999987632 344456666665543 3346677777543
No 244
>PRK08727 hypothetical protein; Validated
Probab=96.04 E-value=0.014 Score=64.44 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=25.8
Q ss_pred CeEEEEEcchhhhhccC-chHHHHHHHHhCCC-CceEEEEeccCchhH
Q 047890 603 QVSLLVLDEADRMLDMG-FEPQIRKIVNEMPP-HRQTLMYTATWPKDV 648 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~g-f~~~i~~IL~~l~~-~~qiLllSATl~~~v 648 (1134)
++++|||||+|.+.... ....+..+++.+.. ...+|+.|-..+.+.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 55789999999876432 33445555555432 233444444444433
No 245
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.01 E-value=0.043 Score=74.36 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHH
Q 047890 478 SSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQI 545 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~ 545 (1134)
..|++-|++|+..++.. +-++|.+..|+|||.+.-. ++..+..+.. ..+..|+.++||-.-+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~-i~~~~~~l~e--~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRA-VMSAVNMLPE--SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHH-HHHHHHHHhh--ccCceEEEEechHHHHHHH
Confidence 36999999999999965 6688899999999987422 2233322211 2456899999996665554
No 246
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.0071 Score=74.98 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=26.9
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
.+.+++||||+|+|... ....+.++++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 46789999999987654 3456777777766666444433
No 247
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.91 E-value=0.069 Score=64.18 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=66.2
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHH-HHhcCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhccCCCCceEEecCCCCCc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILL-RQLHNNPRNGPTVLVLA-PT-RELATQIQDEANKFGRSSRLSCTCLYGGAPKG 570 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L-~~~~~~~~~g~kvLVLv-PT-reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~ 570 (1134)
++.++++++||+|||.+++..+..+. .. .+.+|.+|. .+ +.-+ .+.+..|....++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~------~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~---------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY------GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPV---------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCccHHHH---HHHHHHHHHHhCCce----------
Confidence 34578889999999988765554443 21 233455444 33 2111 123333332222222
Q ss_pred hhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc-cCchHHHHHHHHh-CCCCceEEEEeccCch-h
Q 047890 571 PQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNE-MPPHRQTLMYTATWPK-D 647 (1134)
Q Consensus 571 ~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~-~gf~~~i~~IL~~-l~~~~qiLllSATl~~-~ 647 (1134)
.++.++..|...+.. +.++++||||.+-+... ......+..++.. .......|+++||... +
T Consensus 282 -----------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 282 -----------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred -----------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 122344444444432 33679999999865322 1123455555552 2233447888998654 4
Q ss_pred HHHHHHhh
Q 047890 648 VRKIASDL 655 (1134)
Q Consensus 648 v~~l~~~~ 655 (1134)
+.+++..+
T Consensus 347 l~~~~~~f 354 (424)
T PRK05703 347 LKDIYKHF 354 (424)
T ss_pred HHHHHHHh
Confidence 44554444
No 248
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=95.91 E-value=0.006 Score=71.55 Aligned_cols=6 Identities=17% Similarity=0.717 Sum_probs=2.2
Q ss_pred hhccCc
Q 047890 789 IGRTGR 794 (1134)
Q Consensus 789 iGRagR 794 (1134)
+.-.|+
T Consensus 215 lnkqg~ 220 (653)
T KOG2548|consen 215 LNKQGE 220 (653)
T ss_pred HHhhhh
Confidence 333333
No 249
>PRK05642 DNA replication initiation factor; Validated
Probab=95.88 E-value=0.023 Score=62.69 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=29.9
Q ss_pred CeEEEEEcchhhhhcc-CchHHHHHHHHhCCCCceEEEEeccCch
Q 047890 603 QVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATWPK 646 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~~qiLllSATl~~ 646 (1134)
++++||||++|.+... .+...+..+++.+......+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 5578999999977543 3456677787776554446777777543
No 250
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.88 E-value=0.0053 Score=73.33 Aligned_cols=16 Identities=44% Similarity=0.715 Sum_probs=8.8
Q ss_pred EEEEccCCCchhHHHH
Q 047890 497 IVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 497 vLl~ApTGSGKTla~l 512 (1134)
|+|.|.-|---++-||
T Consensus 208 IvlkaKQ~~N~qFgFL 223 (878)
T KOG1847|consen 208 IVLKAKQGDNPQFGFL 223 (878)
T ss_pred EEeeeccCCCccccee
Confidence 5555666555555544
No 251
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.86 E-value=0.0092 Score=65.89 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=25.0
Q ss_pred eEEEEEcchhhhhcc-CchHHHHHHHHhCCC-CceEEEEeccCc
Q 047890 604 VSLLVLDEADRMLDM-GFEPQIRKIVNEMPP-HRQTLMYTATWP 645 (1134)
Q Consensus 604 l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~-~~qiLllSATl~ 645 (1134)
+++|||||+|.+... .+...+..+++.+.. ....+++|++.+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 468999999987643 345556666655432 222455565543
No 252
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.83 E-value=0.071 Score=73.20 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHH
Q 047890 478 SSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQI 545 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~ 545 (1134)
..|++.|++|+..++.. +-++|.+..|+|||.+. -.++..+..+.. ..+..|+.++||-.-+..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~--~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPE--SERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhc--ccCceEEEECCcHHHHHHH
Confidence 35899999999999985 56788899999999763 333334332211 2356799999996666544
No 253
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=95.81 E-value=0.0053 Score=68.31 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 047890 540 ELATQIQDE 548 (1134)
Q Consensus 540 eLa~Q~~~e 548 (1134)
+++++|+..
T Consensus 84 evideIyyq 92 (453)
T KOG2888|consen 84 EVIDEIYYQ 92 (453)
T ss_pred HHHHHHHHH
Confidence 344444433
No 254
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.80 E-value=0.034 Score=56.74 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=51.5
Q ss_pred CCChhHHHHHHHHHhcCC-CCeeeecccceeccccCc--ceEEEeecCCCC-----------------------------
Q 047890 734 DKSQGERDWVLNQFRSGK-SPILVATDVAARGLDIKD--IRVVINYDFPNG----------------------------- 781 (1134)
Q Consensus 734 ~ms~~eR~~il~~FrsGe-~~VLVATdvl~~GLDIp~--v~~VI~~d~P~s----------------------------- 781 (1134)
+....+...+++.|++.. ..||++|..+.+|||+++ +.+||...+|.-
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344446788999998754 379999988999999987 456888776631
Q ss_pred --hhhHHHhhhccCcCCCcceeEEEec
Q 047890 782 --VEDYVHRIGRTGRAGATGVAHTFFS 806 (1134)
Q Consensus 782 --~~~yiQRiGRagR~GqkG~~ii~~~ 806 (1134)
...+.|.+||+-|....--++++++
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1223588899999766544555554
No 255
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.043 Score=69.55 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=67.9
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc-ccHH--HHHHHHHHHHHhccCCCCceEEecCCCCCchh
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA-PTRE--LATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ 572 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv-PTre--La~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~ 572 (1134)
-++++++||+|||.++...+..+... ....+|.+++ .+-- -++|+ +.+....++.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~-----~G~kkV~lit~Dt~RigA~eQL----~~~a~~~gvpv------------ 245 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAR-----EGADQLALLTTDSFRIGALEQL----RIYGRILGVPV------------ 245 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHH-----cCCCeEEEecCcccchHHHHHH----HHHHHhCCCCc------------
Confidence 46788999999998876655443221 0122444443 3321 33443 33322222221
Q ss_pred HHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc-CchHHHHHHHHhCCCCceEEEEeccCch-hHHH
Q 047890 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATWPK-DVRK 650 (1134)
Q Consensus 573 l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~~qiLllSATl~~-~v~~ 650 (1134)
+++.++..+.+.+. .+.++++||||=+=+.-.. .....+..+.....+...+|.++||... ++.+
T Consensus 246 ---------~~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 246 ---------HAVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred ---------cccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 12335666655554 2346689999988765421 2334444444444555568888998643 3444
Q ss_pred HHHhh
Q 047890 651 IASDL 655 (1134)
Q Consensus 651 l~~~~ 655 (1134)
+++.|
T Consensus 313 i~~~f 317 (767)
T PRK14723 313 VVHAY 317 (767)
T ss_pred HHHHH
Confidence 55555
No 256
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.75 E-value=0.033 Score=56.90 Aligned_cols=70 Identities=23% Similarity=0.323 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCCC---Ceeeeccc--ceeccccCc--ceEEEeecCCCC----h------------------------
Q 047890 738 GERDWVLNQFRSGKS---PILVATDV--AARGLDIKD--IRVVINYDFPNG----V------------------------ 782 (1134)
Q Consensus 738 ~eR~~il~~FrsGe~---~VLVATdv--l~~GLDIp~--v~~VI~~d~P~s----~------------------------ 782 (1134)
.+..++++.|++... .||+++.- +.+|||+++ +++||.+.+|.- +
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 355788899987543 58888866 999999987 567888877631 1
Q ss_pred ---hhHHHhhhccCcCCCcceeEEEecc
Q 047890 783 ---EDYVHRIGRTGRAGATGVAHTFFSE 807 (1134)
Q Consensus 783 ---~~yiQRiGRagR~GqkG~~ii~~~~ 807 (1134)
..+.|.+||+-|....--++++++.
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 1235899999998766555565543
No 257
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.62 E-value=0.11 Score=65.93 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=18.8
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHh
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNE 630 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~ 630 (1134)
..+.+|||||+|.|... -...+..+++.
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 45679999999998764 23445555543
No 258
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.013 Score=73.11 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=27.9
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
...++++||||+|.|... -.+.+.++|+..+.+..+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 357889999999977643 3456777787776666455444
No 259
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.52 E-value=0.055 Score=69.41 Aligned_cols=109 Identities=18% Similarity=0.156 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|++-|++|+.. ....++|.|..|||||.+.+.=+..++.... -....+|+|+-|+..|..+.+.+.++....
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~-- 81 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQLLGTS-- 81 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHHhccC--
Confidence 489999999864 3468999999999999986555544443211 134579999999999999999998864210
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHH-HhcccCC-CCeEEEEEcchhh
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL-EMKKIDF-GQVSLLVLDEADR 614 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL-~~~~l~l-~~l~lVVIDEAHr 614 (1134)
...+.|+|...|..-+ ......+ -.-++.|+|+.+.
T Consensus 82 --------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 119 (721)
T PRK11773 82 --------------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQ 119 (721)
T ss_pred --------------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 0247789998876543 3221111 0123567888764
No 260
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.51 E-value=0.11 Score=61.18 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=73.8
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
++-+.+++|||-|||.+..-+++.+... .......||-+.|--+. ..+.|+.++...++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~----~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML----KKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh----ccCcceEEEEeccchhh--HHHHHHHHHHHhCCce-------------
Confidence 4567889999999999876665555411 12334566666652222 1233333333333332
Q ss_pred HhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh-ccCchHHHHHHHHhCCCCceEEEEeccCc-hhHHHH
Q 047890 574 RELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTATWP-KDVRKI 651 (1134)
Q Consensus 574 ~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll-~~gf~~~i~~IL~~l~~~~qiLllSATl~-~~v~~l 651 (1134)
.+|-+|..|...+. .+.++++|.||=+=+-. |.-....+..++......--.|.+|||.. .+++++
T Consensus 264 --------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 264 --------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred --------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 44555655655443 45577899999776522 22234455555555544445788899864 345555
Q ss_pred HHhh
Q 047890 652 ASDL 655 (1134)
Q Consensus 652 ~~~~ 655 (1134)
+..|
T Consensus 332 ~~~f 335 (407)
T COG1419 332 IKQF 335 (407)
T ss_pred HHHh
Confidence 5555
No 261
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.51 E-value=0.056 Score=69.25 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
..|++-|++||.. ....++|.|..|||||.+.+.=+..++.... -...++|+|+-|+..|..+.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~---v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~- 76 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN---ASPHSIMAVTFTNKAAAEMRHRIGALLGTS- 76 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC---CCHHHeEeeeccHHHHHHHHHHHHHHhccc-
Confidence 3589999999864 3467999999999999986555544443211 134579999999999999999998864210
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHH-HHhcc--cCCCCeEEEEEcchhh
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDI-LEMKK--IDFGQVSLLVLDEADR 614 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~l-L~~~~--l~l~~l~lVVIDEAHr 614 (1134)
...+.|+|...|... |.... +.+ .-++.|+|+.+.
T Consensus 77 ---------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ---------------------ARGMWIGTFHGLAHRLLRAHHLDAGL-PQDFQILDSDDQ 114 (715)
T ss_pred ---------------------ccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 024788999887653 33221 111 123567788764
No 262
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.47 E-value=0.064 Score=64.51 Aligned_cols=127 Identities=22% Similarity=0.227 Sum_probs=65.3
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc-c-H-HHHHHHHHHHHHhccCCCCceEEecCCCCCchh
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP-T-R-ELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ 572 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP-T-r-eLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~ 572 (1134)
.+++++++|+|||.++...+..+.+ .+.++++|+. + + ...+|+....+. .++.+...... .
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~-------~g~kV~lV~~D~~R~aa~eQL~~la~~----~gvp~~~~~~~--~--- 160 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK-------KGLKVGLVAADTYRPAAYDQLKQLAEK----IGVPFYGDPDN--K--- 160 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEecCCCCCHHHHHHHHHHHHH----cCCcEEecCCc--c---
Confidence 4678899999999987766654332 2345555543 3 1 223333333333 23322111100 0
Q ss_pred HHhhcCCCcEEEeChH-HHHHHHHhcccCCCCeEEEEEcchhhhhc-cCchHHHHHHHHhCCCCceEEEEeccCchhHHH
Q 047890 573 LRELDQGADIVVATPG-RLNDILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650 (1134)
Q Consensus 573 l~~l~~~~dIIVaTPe-rL~~lL~~~~l~l~~l~lVVIDEAHrll~-~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~ 650 (1134)
.+. .+.+.+.. +...++||||.+-++.. ......+..+.....+..-+|.++||...+..+
T Consensus 161 -------------d~~~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~ 223 (437)
T PRK00771 161 -------------DAVEIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKN 223 (437)
T ss_pred -------------CHHHHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHH
Confidence 011 12222221 12237899999955432 223444555555555666688888887665555
Q ss_pred HHHhh
Q 047890 651 IASDL 655 (1134)
Q Consensus 651 l~~~~ 655 (1134)
.++.+
T Consensus 224 ~a~~F 228 (437)
T PRK00771 224 QAKAF 228 (437)
T ss_pred HHHHH
Confidence 55554
No 263
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.45 E-value=0.052 Score=66.43 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=18.0
Q ss_pred CCEEEEccCCCchhHHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFI 517 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~ 517 (1134)
..+|+.++.|+|||.++.+.+-.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999886655443
No 264
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.44 E-value=0.032 Score=62.06 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=65.0
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCC-CCchhHHhhcC-CCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 527 RNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGA-PKGPQLRELDQ-GADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 527 ~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~-~~~~~l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
...|.+||||.+..-|..+...++.|... ...+.-++..- ...+++..+.. .+.|.|+||++|..+++...+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 35689999999988888888888887421 12233333332 33444444543 58999999999999999999999999
Q ss_pred EEEEEcchhh
Q 047890 605 SLLVLDEADR 614 (1134)
Q Consensus 605 ~lVVIDEAHr 614 (1134)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998774
No 265
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.42 E-value=0.045 Score=69.60 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|++-|++|+.. ....++|.|..|||||.+.+.-+..++.... -...++|+|+-|+..|..+.+.+.++....
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~-- 74 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVAQTLGRK-- 74 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC---CCHHHeeeEechHHHHHHHHHHHHHHhCcc--
Confidence 478999999865 3567899999999999986665555554211 133479999999999999999988764210
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHH-HhcccCCC-CeEEEEEcchhh
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL-EMKKIDFG-QVSLLVLDEADR 614 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL-~~~~l~l~-~l~lVVIDEAHr 614 (1134)
....|.|.|...|..-+ ......+. .-++.|+||.+.
T Consensus 75 -------------------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 75 -------------------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred -------------------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 01247789988876433 22111111 123567787764
No 266
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.37 E-value=0.084 Score=63.25 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHH
Q 047890 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 480 prpiQ~eaI~~il~grdvLl~ApTGSGKTla~ll 513 (1134)
+-......+..+..++++|+.+++|+|||..+..
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 3445556677777899999999999999977543
No 267
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.32 E-value=0.16 Score=59.12 Aligned_cols=46 Identities=26% Similarity=0.313 Sum_probs=29.9
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQ 546 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~ 546 (1134)
...++++.++||+|||..+...+-.++. .+..|+++.- .+|...+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~-------~g~~V~y~t~-~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLD-------RGKSVIYRTA-DELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-------CCCeEEEEEH-HHHHHHHH
Confidence 3578999999999999765544444443 3456766553 45555443
No 268
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.30 E-value=0.077 Score=64.76 Aligned_cols=71 Identities=24% Similarity=0.238 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 482 PIQAQTWPIALQ-----G----RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 482 piQ~eaI~~il~-----g----rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
|||+-+|-.++. + +.+++.-+=+-|||......++..+-- ....+..+++++++++-|..+++.+.++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~---~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL---DGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc---CCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 578887777762 1 457788899999998765554443321 1235678999999999999999999887
Q ss_pred ccC
Q 047890 553 GRS 555 (1134)
Q Consensus 553 ~~~ 555 (1134)
...
T Consensus 78 i~~ 80 (477)
T PF03354_consen 78 IEA 80 (477)
T ss_pred HHh
Confidence 654
No 269
>PRK06921 hypothetical protein; Provisional
Probab=95.29 E-value=0.14 Score=57.67 Aligned_cols=45 Identities=29% Similarity=0.284 Sum_probs=27.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQI 545 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~ 545 (1134)
+..+++.+++|+|||..+...+-.++.. .+..|+++.. .+|..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~------~g~~v~y~~~-~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK------KGVPVLYFPF-VEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh------cCceEEEEEH-HHHHHHH
Confidence 5679999999999996644433333321 1456776664 3444443
No 270
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.28 E-value=0.046 Score=61.25 Aligned_cols=119 Identities=16% Similarity=0.071 Sum_probs=58.8
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCc-
Q 047890 492 LQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKG- 570 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~- 570 (1134)
..+.-++|.+++|+|||..++..++..+.. .+.+|+|++-. +-..++...+........+............
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~------~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 100 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ------HGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDTVFIYTLEE 100 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh------cCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCccccccHHH
Confidence 456778999999999998766555554431 25678888742 2334444444333211111110000000101
Q ss_pred --hhHHhhcCCCcEE-Ee-----ChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc
Q 047890 571 --PQLRELDQGADIV-VA-----TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM 618 (1134)
Q Consensus 571 --~~l~~l~~~~dII-Va-----TPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~ 618 (1134)
.....+.....++ +- |.+.+...+.... ...++++||||..+.+...
T Consensus 101 ~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 101 FDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 1112222111222 21 4444554443222 1236889999999987643
No 271
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.13 Score=59.62 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHHHHHc----CC---CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHH
Q 047890 477 FSSPTPIQAQTWPIALQ----GR---DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEA 549 (1134)
Q Consensus 477 f~~prpiQ~eaI~~il~----gr---dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el 549 (1134)
+..++|||..++..+.. ++ -+|+.++.|.||+..+...+-.++.... .... .|+.. ..+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~----~~~~---~c~~c-------~~~ 67 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP----DPAA---AQRTR-------QLI 67 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC----CCCC---cchHH-------HHH
Confidence 34688999999988774 22 4889999999999876654444432110 0000 12211 111
Q ss_pred HHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHH
Q 047890 550 NKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVN 629 (1134)
Q Consensus 550 ~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~ 629 (1134)
.. +...++.++...-+. ... .....|.|-....+.+.+.... .....++|||||||.|... -.+.+.++++
T Consensus 68 ~~-g~HPD~~~i~~~p~~-~~~-----k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 138 (319)
T PRK08769 68 AA-GTHPDLQLVSFIPNR-TGD-----KLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRA-ACNALLKTLE 138 (319)
T ss_pred hc-CCCCCEEEEecCCCc-ccc-----cccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHH-HHHHHHHHhh
Confidence 11 111122211101000 000 0001233222222333232222 2346889999999998654 4677788898
Q ss_pred hCCCCceEEEEecc
Q 047890 630 EMPPHRQTLMYTAT 643 (1134)
Q Consensus 630 ~l~~~~qiLllSAT 643 (1134)
+-+.++.+|++|..
T Consensus 139 EPp~~~~fiL~~~~ 152 (319)
T PRK08769 139 EPSPGRYLWLISAQ 152 (319)
T ss_pred CCCCCCeEEEEECC
Confidence 87777766666654
No 272
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.27 E-value=0.058 Score=65.36 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=28.6
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEA 549 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el 549 (1134)
+.+++.+++|+|||......+..+.+.. .+.+++++.. .++...+...+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~-~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTS-EKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHH
Confidence 4588999999999976544333333211 2446666644 45555444433
No 273
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.27 E-value=0.11 Score=57.56 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=38.8
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+..+||.+++|+|||+.++-.++..++ .+.++|||+- .+-..++.+.+..++.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~-------~ge~~lyvs~-ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-------MGEPGIYVAL-EEHPVQVRRNMAQFGW 73 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-------cCCcEEEEEe-eCCHHHHHHHHHHhCC
Confidence 467889999999999877665555554 4668888884 4667777777776653
No 274
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.061 Score=67.17 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=28.4
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
+...++|||||+|.|.... .+.+.+.|+..+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4578899999999876533 456666777777776556554
No 275
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=95.23 E-value=0.011 Score=65.78 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=5.1
Q ss_pred EEEEEcchhhh
Q 047890 605 SLLVLDEADRM 615 (1134)
Q Consensus 605 ~lVVIDEAHrl 615 (1134)
.|+-||-.|.+
T Consensus 75 ~Lyelktyhev 85 (453)
T KOG2888|consen 75 NLYELKTYHEV 85 (453)
T ss_pred hhhhhhhHHHH
Confidence 34444545543
No 276
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.20 E-value=0.09 Score=57.03 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=24.3
Q ss_pred eEEEEEcchhhhhcc-CchHHHHHHHHhCCCCceEEEEeccC
Q 047890 604 VSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 604 l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~~qiLllSATl 644 (1134)
.++|||||+|.+... .+...+..+++.+......+++|++.
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 468999999987643 23455666665543222245566653
No 277
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.20 E-value=0.25 Score=55.84 Aligned_cols=128 Identities=19% Similarity=0.245 Sum_probs=72.1
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc-c--HHHHHHHHHHHHHhccCCCCceEEecCCCCCch
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP-T--RELATQIQDEANKFGRSSRLSCTCLYGGAPKGP 571 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP-T--reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~ 571 (1134)
..+++++++|+|||..+.+.+..+.. .+.++.+++- + ...+.||....+.+ ++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~-------~~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~~------------ 132 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG-------KKKTVGFITTDHSRIGTVQQLQDYVKTI----GFE------------ 132 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEecCCCCHHHHHHHHHHhhhc----Cce------------
Confidence 46788899999999887665544322 2334444443 2 25666666544432 222
Q ss_pred hHHhhcCCCcEEE-eChHHHHHHHHhcccCCCCeEEEEEcchhhhhc-cCchHHHHHHHHhCCCCceEEEEeccCc-hhH
Q 047890 572 QLRELDQGADIVV-ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWP-KDV 648 (1134)
Q Consensus 572 ~l~~l~~~~dIIV-aTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~-~gf~~~i~~IL~~l~~~~qiLllSATl~-~~v 648 (1134)
+++ .++..|.+.+..-. ...++++||||.+=++.. ......+.+++....+..-++.++||.. .+.
T Consensus 133 ----------~~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 133 ----------VIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred ----------EEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 222 34455544443111 123678999999876532 2223444555555555545778999864 466
Q ss_pred HHHHHhhc
Q 047890 649 RKIASDLL 656 (1134)
Q Consensus 649 ~~l~~~~l 656 (1134)
.++++.|-
T Consensus 202 ~~~~~~f~ 209 (270)
T PRK06731 202 IEIITNFK 209 (270)
T ss_pred HHHHHHhC
Confidence 66766653
No 278
>PRK12377 putative replication protein; Provisional
Probab=95.19 E-value=0.16 Score=56.78 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHH--------cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHH
Q 047890 481 TPIQAQTWPIAL--------QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDE 548 (1134)
Q Consensus 481 rpiQ~eaI~~il--------~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~e 548 (1134)
.+-|..++..+. ....+++.+++|+|||-.+...+-.++. .+..|+++ ...+|...+...
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~-------~g~~v~~i-~~~~l~~~l~~~ 147 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLA-------KGRSVIVV-TVPDVMSRLHES 147 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCeEEE-EHHHHHHHHHHH
Confidence 456665554332 1257899999999999765544444433 34455554 345666665443
No 279
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.15 E-value=0.11 Score=66.06 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCc
Q 047890 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLS 559 (1134)
Q Consensus 480 prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~ 559 (1134)
|++-|++|+.. ....++|.|..|||||.+.+.-+..++.... ....++|+|+-|+..+.++.+.+.+.....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~--- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTLGKG--- 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhCcc---
Confidence 78999999864 3568999999999999986666655554211 134579999999999999999888754210
Q ss_pred eEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcc-cCCC-CeEEEEEcchhh
Q 047890 560 CTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKK-IDFG-QVSLLVLDEADR 614 (1134)
Q Consensus 560 v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~-l~l~-~l~lVVIDEAHr 614 (1134)
....|.|.|..+|...+-... ..+. .-.+-|+||.+.
T Consensus 74 ------------------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 74 ------------------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred ------------------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 013578999988865543221 1000 123457787764
No 280
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.14 E-value=0.075 Score=67.70 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cceec
Q 047890 691 RLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VAARG 764 (1134)
Q Consensus 691 ~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl~~G 764 (1134)
.+..++..+..+.++||.++|+..|..+++.|.+ ++.+..++|+++.++|.++++.+.+|+++|||+|. .+...
T Consensus 299 a~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~ 378 (681)
T PRK10917 299 AALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD 378 (681)
T ss_pred HHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc
Confidence 3445555566788999999999999888777643 46789999999999999999999999999999995 45556
Q ss_pred cccCcceEEEe
Q 047890 765 LDIKDIRVVIN 775 (1134)
Q Consensus 765 LDIp~v~~VI~ 775 (1134)
+.+.++.+||.
T Consensus 379 v~~~~l~lvVI 389 (681)
T PRK10917 379 VEFHNLGLVII 389 (681)
T ss_pred chhcccceEEE
Confidence 77888888774
No 281
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.059 Score=60.39 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=48.6
Q ss_pred HHHcCCCCCCHHHHHHHHHHH-------cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHH
Q 047890 472 MHSAGFSSPTPIQAQTWPIAL-------QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQ 544 (1134)
Q Consensus 472 l~~~Gf~~prpiQ~eaI~~il-------~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q 544 (1134)
+....|......+++++..+. .+.++++.+++|+|||..++..+..+++ .+..|+|+ ++.+|+.+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~-------~g~sv~f~-~~~el~~~ 147 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLK-------AGISVLFI-TAPDLLSK 147 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEE-EHHHHHHH
Confidence 334455666777777766654 4579999999999999876666655553 34455554 45688887
Q ss_pred HHHHHHH
Q 047890 545 IQDEANK 551 (1134)
Q Consensus 545 ~~~el~k 551 (1134)
+...+..
T Consensus 148 Lk~~~~~ 154 (254)
T COG1484 148 LKAAFDE 154 (254)
T ss_pred HHHHHhc
Confidence 7665553
No 282
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.16 Score=54.15 Aligned_cols=87 Identities=21% Similarity=0.137 Sum_probs=50.5
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhh
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l 576 (1134)
.++.++|.||||...|--+..+. ..+.+++|..|... .. .....+...-|..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~-------~~g~~v~vfkp~iD----------~R---~~~~~V~Sr~G~~-------- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYK-------EAGMKVLVFKPAID----------TR---YGVGKVSSRIGLS-------- 58 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHH-------HcCCeEEEEecccc----------cc---cccceeeeccCCc--------
Confidence 57889999999986333222221 25678999888411 10 0111111111211
Q ss_pred cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh
Q 047890 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 577 ~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr 614 (1134)
...++|-....+.+++......+ .+++|+||||+-
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF 93 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQF 93 (201)
T ss_pred --ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHh
Confidence 13466667777777776544333 288999999995
No 283
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.12 E-value=0.17 Score=56.90 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHHHHH
Q 047890 485 AQTWPIALQGRDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 485 ~eaI~~il~grdvLl~ApTGSGKTla~llp 514 (1134)
+.++..+..+..+|+.+++|+|||.++...
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 344555667899999999999999876543
No 284
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=95.12 E-value=0.18 Score=53.52 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=9.1
Q ss_pred eecCCCChhhHHHhhhccCcC
Q 047890 775 NYDFPNGVEDYVHRIGRTGRA 795 (1134)
Q Consensus 775 ~~d~P~s~~~yiQRiGRagR~ 795 (1134)
|+..-.+++++.--.-+.|+.
T Consensus 20 NLTyRTspd~LrrvFekYG~v 40 (256)
T KOG4207|consen 20 NLTYRTSPDDLRRVFEKYGRV 40 (256)
T ss_pred ceeccCCHHHHHHHHHHhCcc
Confidence 333334455544444444443
No 285
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.11 E-value=0.083 Score=63.05 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=25.7
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQ 544 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q 544 (1134)
..+++.+++|+|||......+-.+.+. ..+.+++++.. ..+...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~-----~~~~~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN-----NPNAKVVYVSS-EKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh-----CCCCcEEEEEH-HHHHHH
Confidence 357899999999997654333333221 12456777653 344443
No 286
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.079 Score=64.52 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=27.0
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
..+.+++||||+|.|.... .+.+.+.++..+....+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3578899999999876543 345666677766665444443
No 287
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.12 Score=60.20 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHcCC----CEEEEccCCCchhHHHHHHHHHH
Q 047890 479 SPTPIQAQTWPIALQGR----DIVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~gr----dvLl~ApTGSGKTla~llpal~~ 518 (1134)
.++|||...|..++... -+|+.++.|.|||..+...+-.+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH
Confidence 35799999999988653 47889999999998766544443
No 288
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.06 E-value=0.12 Score=62.59 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=24.1
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
..+.++||||||.|.... .+.+.++++.-+.+. ++++.+|
T Consensus 120 g~~KV~IIDEah~Ls~~A-~NALLKtLEEPp~~v-iFILaTt 159 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQS-FNALLKTLEEPPAHI-VFILATT 159 (484)
T ss_pred CCCEEEEEechhhcCHHH-HHHHHHHhhcCCCce-EEEeecC
Confidence 467899999999876543 344455565544343 3334444
No 289
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.05 E-value=0.064 Score=72.61 Aligned_cols=123 Identities=18% Similarity=0.107 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCc
Q 047890 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLS 559 (1134)
Q Consensus 480 prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~ 559 (1134)
+|+-|.+||. ..+.++||.|.-|||||.+.+--++.++... .....+|||+=|+..+..+.+.+.+.+... +.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~~ 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG----VDIDRLLVVTFTNAAAREMKERIEEALQKA-LQ 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-Hh
Confidence 6899999997 4688999999999999998665555544321 123469999999999988888877643211 00
Q ss_pred eEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCe--EEEEEcchhh
Q 047890 560 CTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQV--SLLVLDEADR 614 (1134)
Q Consensus 560 v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l--~lVVIDEAHr 614 (1134)
.........+.+..-...-|+|...|+..+-......-++ .+=|+||...
T Consensus 75 -----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 -----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0001111122222334678999998876554333222222 4556888875
No 290
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.094 Score=61.25 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.5
Q ss_pred CCEEEEccCCCchhHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llp 514 (1134)
.++|+++|.|+|||..+-+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 57899999999999875443
No 291
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.04 E-value=0.056 Score=61.02 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchh
Q 047890 600 DFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647 (1134)
Q Consensus 600 ~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~ 647 (1134)
....+.+|||||||.|.... ...+.++++........++++.-+..-
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhhC
Confidence 34567899999999887653 456777788877777777777664433
No 292
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.03 E-value=0.073 Score=55.44 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=31.5
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccC
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl 644 (1134)
....++||||||.|... ..+.+.++++.-+.+..+|++|...
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 56899999999987654 4678888899888888666666553
No 293
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.02 E-value=0.14 Score=62.49 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=19.3
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~ 518 (1134)
.++.++++++||+|||.++...+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35667888999999998865554443
No 294
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.00 E-value=0.0069 Score=63.93 Aligned_cols=123 Identities=21% Similarity=0.242 Sum_probs=52.7
Q ss_pred EEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhc
Q 047890 498 VAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELD 577 (1134)
Q Consensus 498 Ll~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~ 577 (1134)
||.|+=|-|||.+..+.+..++.. ...+|+|.+|+.+-+..+++.+.+-+...+++..... ..........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------EEEE-SS--S-HHHHHCC----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---cccccccccc
Confidence 578999999998755544333221 2257999999988877777766554433333220000 0000000011
Q ss_pred CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccC
Q 047890 578 QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 578 ~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl 644 (1134)
....|.+..|+.+.... ...++||||||=.+- .+.+.+++... ..++||.|.
T Consensus 72 ~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi 123 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTI 123 (177)
T ss_dssp -CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEB
T ss_pred ccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeec
Confidence 23566777776654322 235789999998654 45556665433 266777774
No 295
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.093 Score=67.33 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=27.4
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
..+.+|||||||.|... ..+.+.++++..+.++.+|+. .|
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa-TT 157 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA-TT 157 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE-CC
Confidence 46789999999987543 345666777776666644443 44
No 296
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.97 E-value=0.025 Score=59.85 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=29.4
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHH
Q 047890 491 ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQI 545 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~ 545 (1134)
+..+.++++.+++|+|||..+...+..++. .+..|+++. ..+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-------~g~~v~f~~-~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR-------KGYSVLFIT-ASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH-------TT--EEEEE-HHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-------CCcceeEee-cCceeccc
Confidence 345678999999999999887666555554 345666654 44555543
No 297
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.96 E-value=0.037 Score=68.69 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHH-HHHHHhccC
Q 047890 479 SPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQ-DEANKFGRS 555 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~-~el~kl~~~ 555 (1134)
..+|+|.+.+..+... +.|++..++-+|||.+.+..+...+.. ....+|++.||.++|+.+. +.|..+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~------~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ------DPGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe------CCCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 5789999999887764 578889999999999654433333221 3457999999999999977 445555443
Q ss_pred CCCceEEecC----CCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 556 SRLSCTCLYG----GAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 556 ~~i~v~~l~G----G~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
....-..+.. ........+.+. +..|.++.-. ....+.-..+.+||+||++.+.
T Consensus 90 sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~------S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 90 SPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGAN------SPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred CHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCC------CCcccccCCcCEEEEechhhcc
Confidence 3221111111 111111222232 3344444311 1123334567899999999874
No 298
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.95 E-value=0.21 Score=62.79 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEE
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMY 640 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLll 640 (1134)
..+.++||||+|+|.... .+.+.++++.-+.+..+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 468899999999876543 45666678776666644444
No 299
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.91 E-value=0.035 Score=60.70 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=30.0
Q ss_pred CCeEEEEEcchhhhhccC-chHHHHHHHHhCC-CCceEEEEeccCchhH
Q 047890 602 GQVSLLVLDEADRMLDMG-FEPQIRKIVNEMP-PHRQTLMYTATWPKDV 648 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~g-f~~~i~~IL~~l~-~~~qiLllSATl~~~v 648 (1134)
..+++||||.+|.+.... +...+..+++.+. ...++|+.|...|.++
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 367899999999987642 3455666666553 3445666666665544
No 300
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.91 E-value=0.047 Score=65.68 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=11.7
Q ss_pred CCcccccCCCCCCCCCCCCC
Q 047890 1103 PTVLLQLVDSSVTEPVLPGK 1122 (1134)
Q Consensus 1103 p~~~~p~~~~~~t~~~~~~~ 1122 (1134)
++.++++..+++|+|-.-.+
T Consensus 160 ~~~~~~~~~~~~t~q~~r~~ 179 (500)
T KOG0120|consen 160 PQLPTPPMDSQATRQARRLY 179 (500)
T ss_pred ccCCCCccCcchhhhhhhhc
Confidence 44555666677776655443
No 301
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.13 Score=59.74 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=28.2
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
+.+|+++|.|+|||+.+=..+-. .+ .++|-+-+..|+.-|.-+-+|
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE----------c~-tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE----------CG-TTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh----------hc-CeEEEechhhhhhhhccchHH
Confidence 78999999999999754332221 11 445555555666655544444
No 302
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.88 E-value=0.3 Score=60.94 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHH---cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWPIAL---QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~il---~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
-|.|.=.+-|..++ +.+-.++.+|=|.|||.+..+.+..++.. .+.+|+|.+|...-+.++++.+++++.
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 34555555555554 44667888999999998876555544431 356899999999999998888777665
No 303
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.85 E-value=0.085 Score=65.63 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
.....+|||||+|.|... -.+.+.++++..+....+|++|
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 357889999999987654 3455667777776666555544
No 304
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.84 E-value=0.13 Score=61.17 Aligned_cols=144 Identities=9% Similarity=0.189 Sum_probs=79.5
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHH-HHHHHHHHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRE-LATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTre-La~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
-.++.+..|||||.++++.++..+... ..+.++||+.++.. |...++.++.......++....-...... .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i- 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI- 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-
Confidence 367889999999998877666555432 13468999988865 77777777776544444432221111110 11
Q ss_pred hhcC-CCcEEEeCh-HHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCC--CCceEEEEeccCchhHHH
Q 047890 575 ELDQ-GADIVVATP-GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP--PHRQTLMYTATWPKDVRK 650 (1134)
Q Consensus 575 ~l~~-~~dIIVaTP-erL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~--~~~qiLllSATl~~~v~~ 650 (1134)
.+.. +..|++..- +...++. ....+++++||||..+... .+..++..+. .....+++|.|.....--
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~ik-----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNKLK-----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EecCCCeEEEeecccCChhHhh-----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 1122 445666553 2222111 2234689999999987432 4444444443 122247888886543333
Q ss_pred HHHhh
Q 047890 651 IASDL 655 (1134)
Q Consensus 651 l~~~~ 655 (1134)
+.+.+
T Consensus 147 ~~~~f 151 (396)
T TIGR01547 147 VKKRF 151 (396)
T ss_pred HHHHH
Confidence 33333
No 305
>PRK09183 transposase/IS protein; Provisional
Probab=94.83 E-value=0.11 Score=58.52 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=30.5
Q ss_pred HHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHH
Q 047890 490 IALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQI 545 (1134)
Q Consensus 490 ~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~ 545 (1134)
++..+.++++.+++|+|||..+...+...+. .+..|+++. ..+|...+
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-------~G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTT-AADLLLQL 145 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEe-HHHHHHHH
Confidence 3456688999999999999765544433332 355677664 23555443
No 306
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.76 E-value=0.2 Score=55.24 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=36.1
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 492 LQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
..+.-+++.+++|+|||..++..+...++ .+.++++++. .+-..+..+.+.+++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-------~g~~~~yi~~-e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQ-------NGYSVSYVST-QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh-------CCCcEEEEeC-CCCHHHHHHHHHHhC
Confidence 34677899999999999876555554443 3467888884 344455555555554
No 307
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.74 E-value=0.17 Score=62.81 Aligned_cols=136 Identities=18% Similarity=0.144 Sum_probs=79.2
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC--CCceEEecCCCCC
Q 047890 492 LQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS--RLSCTCLYGGAPK 569 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~--~i~v~~l~GG~~~ 569 (1134)
.+.+-.++..|==.|||......++.++.. ..+.+++|+++.+..++.++++++.++... ...+..+.| ...
T Consensus 252 fkqk~tVflVPRR~GKTwivv~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLVPLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred hhccceEEEecccCCchhhHHHHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 344667777789999998755333333332 146799999999999999999888765421 111112222 111
Q ss_pred chhHHhhcCCC--cEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCc
Q 047890 570 GPQLRELDQGA--DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645 (1134)
Q Consensus 570 ~~~l~~l~~~~--dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~ 645 (1134)
...+..+. .|.+++ .-..+.+.=..+++||||||+-+.+.-+...+ -++. ..+.++|++|.|-.
T Consensus 326 ---~i~f~nG~kstI~FaS------arntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~--~~n~k~I~ISS~Ns 391 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFAS------SHNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLN--QTNCKIIFVSSTNT 391 (738)
T ss_pred ---EEEecCCCccEEEEEe------ccCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHh--ccCccEEEEecCCC
Confidence 11222232 455553 11122233346899999999987764333333 2222 23778999998844
No 308
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.73 E-value=0.022 Score=68.38 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=6.3
Q ss_pred CCCChhhHHHhhh
Q 047890 778 FPNGVEDYVHRIG 790 (1134)
Q Consensus 778 ~P~s~~~yiQRiG 790 (1134)
.|..+.+.-||.+
T Consensus 517 tpep~~e~~qRrr 529 (878)
T KOG1847|consen 517 TPEPMDETSQRRR 529 (878)
T ss_pred CCCChhHhhhhhc
Confidence 3444555555544
No 309
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.65 E-value=0.65 Score=51.78 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHH----cCC-CEEEEccCCCchhHHHH
Q 047890 480 PTPIQAQTWPIAL----QGR-DIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 480 prpiQ~eaI~~il----~gr-dvLl~ApTGSGKTla~l 512 (1134)
+++.+.+++..+. .+. .+++.++.|+|||..+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555666665543 223 47889999999997644
No 310
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.65 E-value=0.28 Score=63.03 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=18.2
Q ss_pred CCCEEEEccCCCchhHHHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAF 516 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal 516 (1134)
..++|+.+++|+|||..+-..+.
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 36899999999999987554443
No 311
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.64 E-value=0.15 Score=55.59 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=36.9
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
+..+||.+++|+|||+.++-.++..++.. +.+||+++- .+-..++.+.++.++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~------ge~vlyvs~-ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF------GEKVLYVSF-EEPPEELIENMKSFG 71 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH------T--EEEEES-SS-HHHHHHHHHTTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc------CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 46789999999999988776666666521 457888884 356677777777764
No 312
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.12 Score=64.65 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=25.4
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
+....+|||||+|.|.... .+.+.+.++..+... ++++.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 3568899999999876532 334555566655454 4444444
No 313
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.61 E-value=0.12 Score=66.44 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
..|++-|++||.. ....++|.|..|||||.+.+.-+..++.... -...++|+|+-|+..|..+.+.+.+++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~---i~P~~IL~lTFT~kAA~em~~Rl~~~~~~-- 75 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN---VAPWNILAITFTNKAAREMKERVEKLLGP-- 75 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC---CCHHHeeeeeccHHHHHHHHHHHHHHhcc--
Confidence 3589999999874 3567999999999999986665555554211 12347999999999999999988876421
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcc-cCCC-CeEEEEEcchhh
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKK-IDFG-QVSLLVLDEADR 614 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~-l~l~-~l~lVVIDEAHr 614 (1134)
....+.|+|...|...+-... ..+. .-++.|+|+.+.
T Consensus 76 --------------------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 --------------------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred --------------------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 012578999888765432221 1110 223557888764
No 314
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.56 E-value=0.52 Score=51.82 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=35.9
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
+.-+++.+++|+|||..+...++..++ .+.+++|+.-. +-..++.+.++.++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-------~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-------QGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-------CCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 456888899999999876665555443 35678888764 33456666676664
No 315
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.53 E-value=0.17 Score=63.78 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHcCC--CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 480 PTPIQAQTWPIALQGR--DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 480 prpiQ~eaI~~il~gr--dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
....|.+.+..++..+ -++|.|.-|=|||.+.-+.+....+.. ....++|.+|+.+-++.+.+.+.+-+...+
T Consensus 215 dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~-----~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg 289 (758)
T COG1444 215 DQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA-----GSVRIIVTAPTPANVQTLFEFAGKGLEFLG 289 (758)
T ss_pred hHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc-----CCceEEEeCCCHHHHHHHHHHHHHhHHHhC
Confidence 3334444455555543 577789999999998776663333221 145899999998888887776655444433
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceE
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQT 637 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qi 637 (1134)
+...+....... ......+...|-+..|.... ..-++||||||=.|- .+.+.+++..+ +.
T Consensus 290 ~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~~~----~r 349 (758)
T COG1444 290 YKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLRRF----PR 349 (758)
T ss_pred Cccccccccccc--eeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHhhc----Cc
Confidence 332222111000 00000111234445543322 126789999998653 45666666554 36
Q ss_pred EEEeccC
Q 047890 638 LMYTATW 644 (1134)
Q Consensus 638 LllSATl 644 (1134)
++||.|+
T Consensus 350 v~~sTTI 356 (758)
T COG1444 350 VLFSTTI 356 (758)
T ss_pred eEEEeee
Confidence 8888884
No 316
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.51 E-value=0.11 Score=50.76 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=13.5
Q ss_pred EEEEccCCCchhHHHH
Q 047890 497 IVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 497 vLl~ApTGSGKTla~l 512 (1134)
+|+.++.|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 6899999999997643
No 317
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.48 E-value=0.36 Score=57.18 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.7
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
.+++|.+++|+|||.+.-.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~ 74 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK 74 (394)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5699999999999987433
No 318
>PTZ00293 thymidine kinase; Provisional
Probab=94.48 E-value=0.21 Score=54.27 Aligned_cols=37 Identities=19% Similarity=0.041 Sum_probs=24.8
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
.-.++.+||+||||.-.|-.+..+.. .+.+++++-|.
T Consensus 5 ~i~vi~GpMfSGKTteLLr~i~~y~~-------ag~kv~~~kp~ 41 (211)
T PTZ00293 5 TISVIIGPMFSGKTTELMRLVKRFTY-------SEKKCVVIKYS 41 (211)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHH-------cCCceEEEEec
Confidence 34578899999999764433332222 46688888885
No 319
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.47 E-value=0.11 Score=65.79 Aligned_cols=84 Identities=23% Similarity=0.322 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cceecc
Q 047890 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VAARGL 765 (1134)
Q Consensus 692 L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl~~GL 765 (1134)
+..++..+..+.+++|.++|+..|..+++.+.+ ++.+..++|+++.++|..+++.+.+|+.+|||+|. .+...+
T Consensus 274 ~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~ 353 (630)
T TIGR00643 274 ALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV 353 (630)
T ss_pred HHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc
Confidence 445556666788999999999999988776643 57899999999999999999999999999999994 445567
Q ss_pred ccCcceEEEe
Q 047890 766 DIKDIRVVIN 775 (1134)
Q Consensus 766 DIp~v~~VI~ 775 (1134)
++.++.+||.
T Consensus 354 ~~~~l~lvVI 363 (630)
T TIGR00643 354 EFKRLALVII 363 (630)
T ss_pred cccccceEEE
Confidence 7777877763
No 320
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=94.44 E-value=0.18 Score=52.19 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 047890 1067 RRVSGFD 1073 (1134)
Q Consensus 1067 ~~~~~~~ 1073 (1134)
....+|.
T Consensus 121 VPp~gf~ 127 (182)
T PF06495_consen 121 VPPPGFE 127 (182)
T ss_pred CCCcccc
Confidence 3344553
No 321
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.42 E-value=0.087 Score=57.91 Aligned_cols=39 Identities=28% Similarity=0.264 Sum_probs=29.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.+.-++|.+++|+|||..++-.++..+.. .+..++|++-
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~------~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK------QGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCceEEEeC
Confidence 45668889999999998777666665542 2567888884
No 322
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.37 E-value=0.29 Score=53.47 Aligned_cols=53 Identities=30% Similarity=0.429 Sum_probs=34.3
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.+..+++.+++|+|||..++..+...++ .+..+++++- .+..+++.+.++.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~-------~g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR-------DGDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh-------cCCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 3567889999999999876654444443 3446777764 344556555555543
No 323
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.42 Score=56.41 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=20.8
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhC
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEM 631 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l 631 (1134)
....-+||+||++.|.+..- ..+..++...
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 34556899999999988653 5566665543
No 324
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.23 E-value=0.57 Score=56.25 Aligned_cols=129 Identities=16% Similarity=0.230 Sum_probs=65.2
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc-c-HHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP-T-RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP-T-reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
+++++++|+|||.++.-.+..+.+ .+.+|++|+- + +.-+..| ++.+....++.+........
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~-------~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~~~~~~~d------ 166 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR-------KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPFYGSYTESD------ 166 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEcCcccchhHHHH---HHHHhhccCCeEEeecCCCC------
Confidence 677899999999887766554322 3445555543 3 3333332 33333333344333222211
Q ss_pred hhcCCCcEEEeChHHH-HHHHHhcccCCCCeEEEEEcchhhhhcc-CchHHHHHHHHhCCCCceEEEEeccCchhHHHHH
Q 047890 575 ELDQGADIVVATPGRL-NDILEMKKIDFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652 (1134)
Q Consensus 575 ~l~~~~dIIVaTPerL-~~lL~~~~l~l~~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~ 652 (1134)
|..+ .+.+.. +....+++||||=+-++-.. .....+..+.....+..-++.++||...+..+.+
T Consensus 167 ------------p~~i~~~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a 232 (429)
T TIGR01425 167 ------------PVKIASEGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA 232 (429)
T ss_pred ------------HHHHHHHHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH
Confidence 1011 011110 11135678888877654321 2334455555555555557788888765555555
Q ss_pred Hhh
Q 047890 653 SDL 655 (1134)
Q Consensus 653 ~~~ 655 (1134)
+.+
T Consensus 233 ~~F 235 (429)
T TIGR01425 233 KAF 235 (429)
T ss_pred HHH
Confidence 554
No 325
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.24 Score=61.87 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccC
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl 644 (1134)
....+|||||+|.|.... ...+.++++...... ++++.+|-
T Consensus 118 g~~kVIIIDEad~Lt~~a-~naLLk~LEEP~~~~-ifILaTt~ 158 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREA-FNALLKTLEEPPARV-TFVLATTE 158 (624)
T ss_pred CCceEEEEEChHhCCHHH-HHHHHHHhhccCCCE-EEEEecCC
Confidence 467899999999875332 344555555544443 44455553
No 326
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.17 E-value=0.23 Score=56.76 Aligned_cols=40 Identities=23% Similarity=0.456 Sum_probs=28.7
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEec
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTA 642 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSA 642 (1134)
....+|||||||.|.. .-...+.++++.-+.+..+|+++-
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEcC
Confidence 6789999999998765 345667777777666665555554
No 327
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.15 E-value=0.26 Score=69.45 Aligned_cols=65 Identities=23% Similarity=0.184 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHH
Q 047890 478 SSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQI 545 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~ 545 (1134)
..|++.|++|+..++.. +-++|.+..|+|||.+... ++..+..... ..+..|+.++||-.-+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~-~~~~i~~~~~--~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLES-RYKPVLQAFE--SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHH-HHHHHHHHHH--hcCCeEEEEeChHHHHHHH
Confidence 46899999999999876 4567789999999976421 1111211111 1466899999996665554
No 328
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.15 E-value=0.32 Score=50.72 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=41.7
Q ss_pred CCCCeEEEEEcchhhhhccCc--hHHHHHHHHhCCCCceEEEEeccCchhHHHHHH
Q 047890 600 DFGQVSLLVLDEADRMLDMGF--EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIAS 653 (1134)
Q Consensus 600 ~l~~l~lVVIDEAHrll~~gf--~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~ 653 (1134)
....+++||+||+=..++.++ ...+..+++..+...-+|+..-..|+++.+++.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 456789999999998877764 456777888888877777777778877776654
No 329
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.11 E-value=0.16 Score=58.31 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=29.4
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
..+|+++|.|+|||..+-+.+.. .+....+.|-+.-|.+-++.+.+.|++
T Consensus 163 pSmIlWGppG~GKTtlArlia~t-------sk~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAST-------SKKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhh-------cCCCceEEEEEeccccchHHHHHHHHH
Confidence 47899999999999754332221 111234555566665555555554443
No 330
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.08 E-value=0.2 Score=57.04 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=43.2
Q ss_pred hHHHHHHHcCCCCCCHHHHHHHHHHH---cC------CCEEEEccCCCchhHHHHHHHHHHHHHhcCC----CCCCCEEE
Q 047890 467 PRVASMHSAGFSSPTPIQAQTWPIAL---QG------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNN----PRNGPTVL 533 (1134)
Q Consensus 467 ~~l~~l~~~Gf~~prpiQ~eaI~~il---~g------rdvLl~ApTGSGKTla~llpal~~L~~~~~~----~~~g~kvL 533 (1134)
+.+..|.+-.|. -+|.=.+++..+. .. .++||+++|+-|||.+ +-...+..+.. ....|.++
T Consensus 26 eRI~~i~~~rWI-gY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~I----i~rF~~~hp~~~d~~~~~~PVv~ 100 (302)
T PF05621_consen 26 ERIAYIRADRWI-GYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMI----IERFRRLHPPQSDEDAERIPVVY 100 (302)
T ss_pred HHHHHHhcCCee-cCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHH----HHHHHHHCCCCCCCCCccccEEE
Confidence 345555544333 3444444444433 22 4799999999999974 22233322211 12235677
Q ss_pred EEcccHHHHHHHHHHHHH
Q 047890 534 VLAPTRELATQIQDEANK 551 (1134)
Q Consensus 534 VLvPTreLa~Q~~~el~k 551 (1134)
|-+|...-....|..+-.
T Consensus 101 vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 101 VQMPPEPDERRFYSAILE 118 (302)
T ss_pred EecCCCCChHHHHHHHHH
Confidence 777776655556655443
No 331
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.05 E-value=0.12 Score=62.49 Aligned_cols=51 Identities=14% Similarity=0.351 Sum_probs=28.3
Q ss_pred CeEEEEEcchhhhhccC-chHHHHHHHHhCCC-CceEEEEeccCchhHHHHHH
Q 047890 603 QVSLLVLDEADRMLDMG-FEPQIRKIVNEMPP-HRQTLMYTATWPKDVRKIAS 653 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~g-f~~~i~~IL~~l~~-~~qiLllSATl~~~v~~l~~ 653 (1134)
++++|||||+|.+.+.. ....+..+++.+.. ..++|+.|-..+.++..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 56799999999886543 22345555554433 33444444444444444433
No 332
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.99 E-value=0.8 Score=47.72 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCeEEEEEcchhhhh-ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhh
Q 047890 602 GQVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll-~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~ 655 (1134)
...++||+|....+. +......+..+........-++.+.+....+..+.+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 466789999988643 222333444444443344456677776555544444444
No 333
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.21 Score=58.80 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
....+|||||+|.|....+ +.+.+.++..+....+|+.|
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4678999999998765332 34555666655565455543
No 334
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.95 E-value=0.2 Score=60.65 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=58.9
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
+.+++.+++|+|||-... .+...+... ..+.+++++.. .++...+...+....
T Consensus 142 npl~i~G~~G~GKTHLl~-Ai~~~l~~~----~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLK-AAKNYIESN----FSDLKVSYMSG-DEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHHH-HHHHHHHHh----CCCCeEEEEEH-HHHHHHHHHHHHHhh---------------------
Confidence 458899999999995432 222333221 13456777665 466666555544210
Q ss_pred hhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc-CchHHHHHHHHhCCCC-ceEEEEeccCchhH
Q 047890 575 ELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPH-RQTLMYTATWPKDV 648 (1134)
Q Consensus 575 ~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~-~qiLllSATl~~~v 648 (1134)
+.+..+.. .+.++++|||||+|.+... .....+..+++.+... .++|+.|-..|.+.
T Consensus 195 -------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 01111111 1236789999999987643 2345566666665433 34444444444333
No 335
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.93 E-value=0.36 Score=56.88 Aligned_cols=127 Identities=23% Similarity=0.287 Sum_probs=66.2
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEE-cccHH--HHHHHHHHHHHhccCCCCceEEecCCCCCch
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL-APTRE--LATQIQDEANKFGRSSRLSCTCLYGGAPKGP 571 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVL-vPTre--La~Q~~~el~kl~~~~~i~v~~l~GG~~~~~ 571 (1134)
+.+++++++|+|||.++...+..++. .+.+|.+| +.+-- -++||....+.+ ++.+
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~-------~g~~V~lItaDtyR~gAveQLk~yae~l----gvpv----------- 264 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLK-------QNRTVGFITTDTFRSGAVEQFQGYADKL----DVEL----------- 264 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeCCccCccHHHHHHHHhhcC----CCCE-----------
Confidence 45778899999999887766554433 23345444 43322 244554433332 2221
Q ss_pred hHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc-cCchHHHHHHHHhCCCCceEEEEeccCch-hHH
Q 047890 572 QLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPK-DVR 649 (1134)
Q Consensus 572 ~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~-~gf~~~i~~IL~~l~~~~qiLllSATl~~-~v~ 649 (1134)
+++.+|..|.+.+.... ...++++||||=+=+.-. ......+..++..+.+..-++.+|||... ++.
T Consensus 265 ----------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~ 333 (407)
T PRK12726 265 ----------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVM 333 (407)
T ss_pred ----------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHH
Confidence 12235555655443211 124578999998766432 12334445555555444445667776432 444
Q ss_pred HHHHh
Q 047890 650 KIASD 654 (1134)
Q Consensus 650 ~l~~~ 654 (1134)
+++..
T Consensus 334 ~i~~~ 338 (407)
T PRK12726 334 TILPK 338 (407)
T ss_pred HHHHh
Confidence 44443
No 336
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.93 E-value=0.91 Score=58.54 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=18.0
Q ss_pred CCEEEEccCCCchhHHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFI 517 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~ 517 (1134)
.++|+.+++|+|||..+-..+..
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999875544433
No 337
>PF13173 AAA_14: AAA domain
Probab=93.91 E-value=0.28 Score=48.77 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=25.0
Q ss_pred CeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 603 QVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
.-.+|||||+|.+.+ |...++.+++.. .+.+ +++|+.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~-ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIK-IILTGS 97 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCce-EEEEcc
Confidence 456899999999864 677777777755 3444 444444
No 338
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.83 E-value=0.37 Score=58.62 Aligned_cols=24 Identities=25% Similarity=0.073 Sum_probs=18.4
Q ss_pred CCEEEEccCCCchhHHHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~ 518 (1134)
.-++++++||+|||.++...+..+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 347788999999999877665444
No 339
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.088 Score=59.66 Aligned_cols=23 Identities=43% Similarity=0.437 Sum_probs=18.5
Q ss_pred HcCCCEEEEccCCCchhHHHHHH
Q 047890 492 LQGRDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~llp 514 (1134)
+...++|+++|||||||+.+..+
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTL 117 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTL 117 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHH
Confidence 45578999999999999875543
No 340
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.069 Score=62.56 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=17.6
Q ss_pred cCCCEEEEccCCCchhHHHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llp 514 (1134)
+..++|+.+|||||||+.+..+
T Consensus 225 eKSNvLllGPtGsGKTllaqTL 246 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTL 246 (564)
T ss_pred ecccEEEECCCCCchhHHHHHH
Confidence 4468999999999999865443
No 341
>PLN03025 replication factor C subunit; Provisional
Probab=93.78 E-value=0.5 Score=54.64 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=26.0
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
...++|||||+|.|... ....+.++++.......++ ++++
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~i-l~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFA-LACN 137 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEE-EEeC
Confidence 35789999999987643 2455666676655555444 4444
No 342
>PRK04328 hypothetical protein; Provisional
Probab=93.77 E-value=0.48 Score=52.91 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=37.2
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+.-+||.+++|+|||+.++-.++..++ .+.++||++ +.+-..++.+.++.++.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~-------~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-------MGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-------cCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 466888999999999876655555544 455788887 44556667777776653
No 343
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.75 E-value=0.29 Score=58.66 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
..+|+.++.|+|||..+.+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999976443
No 344
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.75 E-value=0.38 Score=52.53 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=25.5
Q ss_pred CeEEEEEcchhhhhccCchHHHHHHHHhCCCCce-EEEEeccCc
Q 047890 603 QVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ-TLMYTATWP 645 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~q-iLllSATl~ 645 (1134)
..++|||||+|.+... ....+..+++.+..... +++++++.+
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4568999999986432 24445555655433333 467777643
No 345
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.74 E-value=1.2 Score=55.20 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=67.5
Q ss_pred CEEEEEeCcHHHHHHHHHHhcCC--------CcEEEecCCCChhHHHHHHHHHh----cCCCCeeeec--ccceeccccC
Q 047890 703 SRVIIFCSTKRLCDQLARSIGRN--------FGAIAIHGDKSQGERDWVLNQFR----SGKSPILVAT--DVAARGLDIK 768 (1134)
Q Consensus 703 ~kvLVF~nT~~~ae~La~~L~~~--------~~v~~LhG~ms~~eR~~il~~Fr----sGe~~VLVAT--dvl~~GLDIp 768 (1134)
.-|+||+++.+....+.+.++.. .+.+.+-...+ -+.+++.|. .|.--||+|. .-+++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 67999999999998888877532 11122222222 345666665 4555677666 7889999996
Q ss_pred c--ceEEEeecCCCC--------------------------------hhhHHHhhhccCcCCCcceeEEEecc
Q 047890 769 D--IRVVINYDFPNG--------------------------------VEDYVHRIGRTGRAGATGVAHTFFSE 807 (1134)
Q Consensus 769 ~--v~~VI~~d~P~s--------------------------------~~~yiQRiGRagR~GqkG~~ii~~~~ 807 (1134)
+ +.+||++++|.. ....-|.||||-|.-+.=.++++++.
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 5 566888887732 01234999999998766666666653
No 346
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.73 E-value=0.22 Score=57.20 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=26.7
Q ss_pred CeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 603 QVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
..++|||||+|.+........+..+++.......+|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998843334556677777776666555544
No 347
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.73 E-value=0.25 Score=59.81 Aligned_cols=59 Identities=29% Similarity=0.292 Sum_probs=39.8
Q ss_pred HHHHHHc-----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 487 TWPIALQ-----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 487 aI~~il~-----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.++.++. +.-+++.+++|+|||..++..+....+ .+.++||++- .+-..|+...+++++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-------~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA-------AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 3445554 356788999999999876655554432 3558888885 455667777777664
No 348
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=93.69 E-value=0.31 Score=50.77 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=3.6
Q ss_pred chHHHHHHHH
Q 047890 809 DSKYAADLVK 818 (1134)
Q Consensus 809 d~~~~~~l~k 818 (1134)
+...+++.+.
T Consensus 56 d~RDA~DAvr 65 (195)
T KOG0107|consen 56 DPRDAEDAVR 65 (195)
T ss_pred CcccHHHHHh
Confidence 3333333333
No 349
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.69 E-value=0.26 Score=52.72 Aligned_cols=145 Identities=16% Similarity=0.158 Sum_probs=77.2
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ 572 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~ 572 (1134)
....+++...+|.|||.+++-.++..+. .+.+|+|+-=.+--.. ..+...+.....+.... .+.......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g-------~G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~-~g~~~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG-------HGKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHV-MGTGFTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH-------CCCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEE-CCCCCcccC
Confidence 4567888899999999998888777765 5667777754332100 11222221111222211 111000000
Q ss_pred HHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCc--hHHHHHHHHhCCCCceEEEEeccCchhHHH
Q 047890 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGF--EPQIRKIVNEMPPHRQTLMYTATWPKDVRK 650 (1134)
Q Consensus 573 l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf--~~~i~~IL~~l~~~~qiLllSATl~~~v~~ 650 (1134)
.....-+......++.. ...+.-..+++||+||+=..++.++ ...+..+|...+...-+|+.--..|+++.+
T Consensus 91 -----~~~~e~~~~~~~~~~~a-~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 91 -----QDRERDIAAAREGWEEA-KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred -----CCcHHHHHHHHHHHHHH-HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 00000000001111111 1223346789999999999888875 456777787777776566555556776666
Q ss_pred HHH
Q 047890 651 IAS 653 (1134)
Q Consensus 651 l~~ 653 (1134)
++.
T Consensus 165 ~AD 167 (191)
T PRK05986 165 AAD 167 (191)
T ss_pred hCc
Confidence 654
No 350
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.69 E-value=0.15 Score=60.44 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=32.7
Q ss_pred CeEEEEEcchhhhhcc-CchHHHHHHHHhCCCCc-eEEEEeccCchhHH
Q 047890 603 QVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHR-QTLMYTATWPKDVR 649 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~~-qiLllSATl~~~v~ 649 (1134)
++++|+||.++.+... .....+..+++.+.... |+|+.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6789999999988765 34566666777665433 67777766666554
No 351
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.68 E-value=0.49 Score=53.59 Aligned_cols=131 Identities=21% Similarity=0.274 Sum_probs=66.9
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA-PT-RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv-PT-reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
-+++++++|+|||.++.-.+..+.+ .+.++++|. .+ +.-+ .+.+..|....++.+.....+ .
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~-------~g~~V~li~~D~~r~~a---~~ql~~~~~~~~i~~~~~~~~--~---- 137 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKK-------QGKSVLLAAGDTFRAAA---IEQLEEWAKRLGVDVIKQKEG--A---- 137 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh-------cCCEEEEEeCCCCCHHH---HHHHHHHHHhCCeEEEeCCCC--C----
Confidence 4667799999999987766654432 345666655 32 2221 223333433333332221111 0
Q ss_pred HhhcCCCcEEEeChHH-HHHHHHhcccCCCCeEEEEEcchhhhhc-cCchHHHHHHHHhCC------CCceEEEEeccCc
Q 047890 574 RELDQGADIVVATPGR-LNDILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMP------PHRQTLMYTATWP 645 (1134)
Q Consensus 574 ~~l~~~~dIIVaTPer-L~~lL~~~~l~l~~l~lVVIDEAHrll~-~gf~~~i~~IL~~l~------~~~qiLllSATl~ 645 (1134)
.|.. +.+.+.. ....++++||||=+-++.. ......+.++..... ....++.++||..
T Consensus 138 ------------dp~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 138 ------------DPAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred ------------CHHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 0111 1122211 1234678999998876542 223344555554443 4555888999876
Q ss_pred hhHHHHHHhhc
Q 047890 646 KDVRKIASDLL 656 (1134)
Q Consensus 646 ~~v~~l~~~~l 656 (1134)
.+....+..+.
T Consensus 204 ~~~~~~~~~f~ 214 (272)
T TIGR00064 204 QNALEQAKVFN 214 (272)
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 352
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.68 E-value=0.34 Score=55.85 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=25.5
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
....+|||||+|.+... ....+..+++.......+|+ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 45679999999987532 34456666766655554444 444
No 353
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.66 E-value=0.19 Score=56.30 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=16.5
Q ss_pred CCEEEEccCCCchhHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llp 514 (1134)
.++|+.+|+|+|||.++-+.
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 46899999999999876544
No 354
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.61 E-value=0.22 Score=65.29 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cceecc
Q 047890 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VAARGL 765 (1134)
Q Consensus 692 L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl~~GL 765 (1134)
+..++..+..+.+++|.++|+..|...++.|.+ .+.+..+++..+.+++.++++.+++|+++|||+|. ++...+
T Consensus 490 l~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v 569 (926)
T TIGR00580 490 MRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDV 569 (926)
T ss_pred HHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCC
Confidence 444555556678999999999999998887754 34677899999999999999999999999999995 555667
Q ss_pred ccCcceEEEe
Q 047890 766 DIKDIRVVIN 775 (1134)
Q Consensus 766 DIp~v~~VI~ 775 (1134)
.+.++.+||.
T Consensus 570 ~f~~L~llVI 579 (926)
T TIGR00580 570 KFKDLGLLII 579 (926)
T ss_pred CcccCCEEEe
Confidence 7888887774
No 355
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.60 E-value=0.28 Score=60.71 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=28.1
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
..+..+|||||+|+|... ..+.+.++++..+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 346789999999997654 3456667777766666555555
No 356
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.58 E-value=0.3 Score=62.24 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=65.0
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhcC--CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEE
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIGR--NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI 774 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~~--~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI 774 (1134)
..+..+.++||.++++..+..+++.|.+ +..+..+|++++..+|.+++.++.+|+.+|+|+|..+.. +.+.++.+||
T Consensus 185 ~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liV 263 (679)
T PRK05580 185 EVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLII 263 (679)
T ss_pred HHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEE
Confidence 3445678999999999999999988865 346889999999999999999999999999999963322 5567788777
Q ss_pred eec
Q 047890 775 NYD 777 (1134)
Q Consensus 775 ~~d 777 (1134)
.-+
T Consensus 264 vDE 266 (679)
T PRK05580 264 VDE 266 (679)
T ss_pred EEC
Confidence 554
No 357
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.53 E-value=0.4 Score=55.28 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=28.0
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQD 547 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~ 547 (1134)
++.+++.+++|+|||..+...+..+++ .+..++++.- .+|+..+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~-------~g~~v~~~~~-~~l~~~lk~ 201 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAK-------KGVSSTLLHF-PEFIRELKN 201 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCEEEEEH-HHHHHHHHH
Confidence 457999999999999765544444433 3445555432 245554433
No 358
>PRK10867 signal recognition particle protein; Provisional
Probab=93.51 E-value=0.4 Score=57.72 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=18.8
Q ss_pred EEEEccCCCchhHHHHHHHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLR 520 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~ 520 (1134)
+++++++|+|||.++.-.+..+..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 677899999999988776665443
No 359
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.43 E-value=0.26 Score=61.91 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=31.8
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccC
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVN 658 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~ 658 (1134)
+.+..+|||||+|.|.... .+.+.+.++..+...-+|+++ | +..++...+...
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t-~---~~~kLl~TI~SR 177 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT-T---ELHKIPATIASR 177 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-C---ChhhhhHHHHhh
Confidence 4577899999999986533 345666666665555444444 4 234444444333
No 360
>PHA00729 NTP-binding motif containing protein
Probab=93.35 E-value=0.56 Score=51.61 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=38.0
Q ss_pred cEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc-Cch----HHHHHHHHhCCCCceEEEEeccCchhHHHHHHhh
Q 047890 581 DIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM-GFE----PQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655 (1134)
Q Consensus 581 dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~-gf~----~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~ 655 (1134)
..++.+.+.|.+.+....-....+++|||||+=--+.. .|. ..+..+...+.....++.++..-+.++.+.++..
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 45666666666665432222235678999993221111 111 1222333334334456666666566666666553
No 361
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.27 E-value=0.36 Score=59.39 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=64.1
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhcCC--CcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEE
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIGRN--FGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI 774 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~~~--~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI 774 (1134)
+.+..++++||.++++..+..+++.|.+. ..+.++|++++..+|.++..+..+|+.+|+|+|..+.. +.+.++.+||
T Consensus 20 ~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lII 98 (505)
T TIGR00595 20 KVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLII 98 (505)
T ss_pred HHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEE
Confidence 34456789999999999999998888653 45889999999999999999999999999999954322 4566777777
Q ss_pred eec
Q 047890 775 NYD 777 (1134)
Q Consensus 775 ~~d 777 (1134)
.-+
T Consensus 99 VDE 101 (505)
T TIGR00595 99 VDE 101 (505)
T ss_pred EEC
Confidence 544
No 362
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.24 E-value=0.9 Score=48.02 Aligned_cols=54 Identities=22% Similarity=0.431 Sum_probs=40.2
Q ss_pred CCCCeEEEEEcchhhhhccCc--hHHHHHHHHhCCCCceEEEEeccCchhHHHHHH
Q 047890 600 DFGQVSLLVLDEADRMLDMGF--EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIAS 653 (1134)
Q Consensus 600 ~l~~l~lVVIDEAHrll~~gf--~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~ 653 (1134)
.-..+++||+||+-..++.++ ...+..+++..+...-+|+.--..|+++.+++.
T Consensus 94 ~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 94 ADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred hcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 346789999999998888774 456777888877777666666667777666654
No 363
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.18 E-value=0.079 Score=68.74 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=77.6
Q ss_pred hcCCEEEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHhcCCCCe-eeecccceeccccCcceEEEeecC
Q 047890 700 ERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPI-LVATDVAARGLDIKDIRVVINYDF 778 (1134)
Q Consensus 700 ~~~~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~FrsGe~~V-LVATdvl~~GLDIp~v~~VI~~d~ 778 (1134)
+.-.++|||+.-....+.+...+..+.-...+.++ -++-...+..|++ +.+ ||-+...+.|+|+-++.+|+..++
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~--t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE--TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC--Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 44579999999888888887776543222223332 3445566777777 544 566788999999999999999999
Q ss_pred CCChhhHHHhhhccCcCCCcceeEEEe
Q 047890 779 PNGVEDYVHRIGRTGRAGATGVAHTFF 805 (1134)
Q Consensus 779 P~s~~~yiQRiGRagR~GqkG~~ii~~ 805 (1134)
--++..-.|++||+.|.|++..+++..
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~V~~ 1321 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTFVHR 1321 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchhhhh
Confidence 999999999999999999987665543
No 364
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.17 E-value=0.63 Score=59.58 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=26.8
Q ss_pred CeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhh
Q 047890 603 QVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~ 655 (1134)
...+|||||+|++... ....++..+. ...++++++|.......+...+
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCChHhhhhhHh
Confidence 4568999999986532 1222333332 3457788887544433343333
No 365
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.13 E-value=0.87 Score=59.67 Aligned_cols=21 Identities=33% Similarity=0.189 Sum_probs=17.0
Q ss_pred CCEEEEccCCCchhHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPA 515 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpa 515 (1134)
.+.|+.+++|+|||..+-..+
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 689999999999998754433
No 366
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.12 E-value=0.25 Score=53.90 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=26.2
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
...++||+||||.|.+ +-...+++.++.+.+.+...+...+
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcc
Confidence 6778999999998765 2345566666655554444444443
No 367
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.10 E-value=0.67 Score=54.18 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
..++|.+++|+|||.+.-.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~ 59 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKY 59 (365)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 5799999999999977443
No 368
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.08 E-value=0.47 Score=56.16 Aligned_cols=52 Identities=31% Similarity=0.348 Sum_probs=34.9
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
+.-+++.+++|+|||..++..+..... .+.++||+.-. +-..|+...+.+++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 456788999999999876555444332 34578888764 44567766666654
No 369
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.06 E-value=0.48 Score=55.41 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=30.3
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
....+++||||||+|... -.+.+.++|+.-+.+..+|++|..
T Consensus 130 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA-AANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCcCcEEEEEECC
Confidence 356889999999998654 356777888887777655555544
No 370
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.03 E-value=0.72 Score=55.16 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=62.2
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA-PT-RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv-PT-reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
+++++++|+|||.++.-.+...... .+.+|++++ .+ +..+.. .+..+....++.+..
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~------~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~------------ 284 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLH------MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP------------ 284 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh------cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeee------------
Confidence 6788999999999877666544221 233454443 33 232222 333332222222111
Q ss_pred hhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh-ccCchHHHHHHHHhCC---CCceEEEEeccCch-hHH
Q 047890 575 ELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML-DMGFEPQIRKIVNEMP---PHRQTLMYTATWPK-DVR 649 (1134)
Q Consensus 575 ~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll-~~gf~~~i~~IL~~l~---~~~qiLllSATl~~-~v~ 649 (1134)
+.....+.+.+. ..++++||||=+-++. +......+.+++.... +...+|.++||... ++.
T Consensus 285 ---------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 285 ---------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred ---------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 111222333332 2467899999665432 2223344455554431 23457888999766 444
Q ss_pred HHHHhh
Q 047890 650 KIASDL 655 (1134)
Q Consensus 650 ~l~~~~ 655 (1134)
+++..+
T Consensus 351 ~~~~~f 356 (432)
T PRK12724 351 TVLKAY 356 (432)
T ss_pred HHHHHh
Confidence 555444
No 371
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=92.93 E-value=0.057 Score=65.71 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=25.8
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
..+++++||||+|.|.... .+.+.+.|+.-+.++ +++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~a-fNALLKTLEEPP~hV--~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQA-FNALLKTLEEPPSHV--KFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHH-HHHHhcccccCccCe--EEEEec
Confidence 5678999999999655443 445555666655554 444444
No 372
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.90 E-value=0.21 Score=54.78 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
.++|+.+|.|+|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 3689999999999976443
No 373
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=92.88 E-value=0.087 Score=64.32 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=14.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHh
Q 047890 529 GPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
-..+||++|+......+.+.+..|
T Consensus 307 v~~i~Vvip~d~~L~~vidrM~~f 330 (877)
T KOG0151|consen 307 VEDILVVIPTDRHLLMVIDRMAEF 330 (877)
T ss_pred ccceeEecCchHHHHHHHHHHHHH
Confidence 345666666666666666666555
No 374
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.82 E-value=1.5 Score=57.42 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=16.5
Q ss_pred CCEEEEccCCCchhHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llp 514 (1134)
.++|++++.|+|||..+-..
T Consensus 209 ~n~lLvG~pGvGKTal~~~L 228 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGL 228 (852)
T ss_pred CceeEECCCCCCHHHHHHHH
Confidence 68999999999999765443
No 375
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.81 E-value=0.48 Score=60.03 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=71.0
Q ss_pred HHHHHHHHHHH-HHhcCCEEEEEeCcHHHHHHHHHHhcCCC---cEEEecCCCChhHHHHHHHHHhcCCCCeeeecccce
Q 047890 687 EKERRLQQILR-AQERGSRVIIFCSTKRLCDQLARSIGRNF---GAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAA 762 (1134)
Q Consensus 687 ek~~~L~~llk-~~~~~~kvLVF~nT~~~ae~La~~L~~~~---~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~ 762 (1134)
.|.+.+..+++ .+..++.+||.++.+..+..+.+.|.+.| .+.++|++++..+|.+...+..+|+.+|+|.|-.+.
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 45555555554 44568899999999999999998887644 488999999999999999999999999999995432
Q ss_pred eccccCcceEEEeecC
Q 047890 763 RGLDIKDIRVVINYDF 778 (1134)
Q Consensus 763 ~GLDIp~v~~VI~~d~ 778 (1134)
- +-++++.+||..+-
T Consensus 252 F-aP~~~LgLIIvdEE 266 (665)
T PRK14873 252 F-APVEDLGLVAIWDD 266 (665)
T ss_pred E-eccCCCCEEEEEcC
Confidence 2 34566677776554
No 376
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=92.80 E-value=0.49 Score=52.95 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=5.3
Q ss_pred cceeEEEec
Q 047890 798 TGVAHTFFS 806 (1134)
Q Consensus 798 kG~~ii~~~ 806 (1134)
+|.++|-|.
T Consensus 143 kGYAFIeye 151 (335)
T KOG0113|consen 143 KGYAFIEYE 151 (335)
T ss_pred cceEEEEec
Confidence 566666554
No 377
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.79 E-value=0.97 Score=59.20 Aligned_cols=22 Identities=32% Similarity=0.142 Sum_probs=17.4
Q ss_pred CCEEEEccCCCchhHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAF 516 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal 516 (1134)
.++|+.+++|+|||..+-..+.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 5899999999999987544433
No 378
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.71 E-value=0.71 Score=57.14 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=27.8
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
..+..+|||||+|.|.... .+.+.+.++..+....+|++|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3567899999999876543 345666777766666555554
No 379
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.69 E-value=0.59 Score=54.27 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
....+++||||||.|... ..+.+.++|++-+.+..+|++|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 356889999999998754 467788888887777755554443
No 380
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=1 Score=52.47 Aligned_cols=152 Identities=15% Similarity=0.241 Sum_probs=90.3
Q ss_pred CCCCCCHHHHHHHHHHHc---C-----------CC-EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc-ccH
Q 047890 476 GFSSPTPIQAQTWPIALQ---G-----------RD-IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA-PTR 539 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~---g-----------rd-vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv-PTr 539 (1134)
|+..-+-+|..+...+.. . -+ +++++=-|+|||.+|.-.++.+-+ .+.++.+|| .|
T Consensus 68 G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kk-------kG~K~~LvcaDT- 139 (483)
T KOG0780|consen 68 GVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKK-------KGYKVALVCADT- 139 (483)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHh-------cCCceeEEeecc-
Confidence 555566778877776653 1 12 556799999999998776665543 455555444 44
Q ss_pred HHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc-
Q 047890 540 ELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM- 618 (1134)
Q Consensus 540 eLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~- 618 (1134)
.-.-.++.|+.+....++.+...+... +. -.+.. .--..+...++++||+|-.-|....
T Consensus 140 -FRagAfDQLkqnA~k~~iP~ygsyte~--dp----------------v~ia~-egv~~fKke~fdvIIvDTSGRh~qe~ 199 (483)
T KOG0780|consen 140 -FRAGAFDQLKQNATKARVPFYGSYTEA--DP----------------VKIAS-EGVDRFKKENFDVIIVDTSGRHKQEA 199 (483)
T ss_pred -cccchHHHHHHHhHhhCCeeEeccccc--ch----------------HHHHH-HHHHHHHhcCCcEEEEeCCCchhhhH
Confidence 222234555555544445443322221 11 11111 1112344567899999988765432
Q ss_pred CchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhh
Q 047890 619 GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655 (1134)
Q Consensus 619 gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~ 655 (1134)
.+.+.+..+.+.+.++.-++.+-|++-...+..++.+
T Consensus 200 sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 200 SLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 3556677788888888778888998877666666554
No 381
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.21 Score=58.15 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHH
Q 047890 495 RDIVAIAKTGSGKTLG 510 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla 510 (1134)
+++++-+|.|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7899999999999975
No 382
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.55 E-value=0.77 Score=59.93 Aligned_cols=23 Identities=26% Similarity=0.081 Sum_probs=18.5
Q ss_pred CCEEEEccCCCchhHHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFI 517 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~ 517 (1134)
+++|+.+++|+|||.++-..+..
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999876554444
No 383
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.47 E-value=0.61 Score=58.14 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=25.8
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
.....++||||+|.|.... ...+.+.++..+... ++++.+|
T Consensus 117 ~~~~kViIIDE~~~Lt~~a-~naLLKtLEepp~~~-ifIlatt 157 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGA-FNALLKTLEEPPAHV-IFILATT 157 (559)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHhcCCCCCe-EEEEEeC
Confidence 4568899999999876433 345555666655554 3444445
No 384
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.43 E-value=0.53 Score=54.91 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=30.5
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
....+++|||+||+|... -.+.+.++|++=+.+.-+|++|.-
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 357899999999998754 467788888886666655555543
No 385
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.42 E-value=0.68 Score=55.21 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=27.8
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
.....++||||+|+|... ..+.+.++++.-+... ++++++|
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~-~fIL~a~ 155 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRT-VWLLCAP 155 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCC-eEEEEEC
Confidence 356789999999998654 3456667777665565 4555555
No 386
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.42 E-value=0.52 Score=57.61 Aligned_cols=72 Identities=26% Similarity=0.282 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 482 PIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 482 piQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
+-|-++|.. ..++-+||++..|||||.+++-=+..+|..... .-....||||.|++.+..-+.+.|=.++..
T Consensus 215 kEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~-~l~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 215 KEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG-PLQAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred HhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhcccc-ccccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 334444332 234557888999999999876544444432222 223344999999999999988888877643
No 387
>PRK05973 replicative DNA helicase; Provisional
Probab=92.32 E-value=0.61 Score=51.79 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=38.2
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 492 LQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
..+.-+||.+++|+|||+.++-.+...++ .+.+++|++-. +=..++.+.+..++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-------~Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMK-------SGRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 34567888999999999887766555543 35678888753 44567777777764
No 388
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.18 E-value=0.43 Score=56.00 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=29.1
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEec
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTA 642 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSA 642 (1134)
.....+|||||||.|... -.+.+.++++..+....+|++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEEC
Confidence 356789999999987643 34567778887666665566653
No 389
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.17 E-value=0.46 Score=56.70 Aligned_cols=145 Identities=14% Similarity=0.019 Sum_probs=76.0
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc---
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR--- 554 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~--- 554 (1134)
..+-..|.+|.-..-.|.. .|.+=.|||||.+.++-+..+- .++...+++|.+-|+.|+.++...+.+|+-
T Consensus 161 anfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh-----~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~ 234 (660)
T COG3972 161 ANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELH-----SKNPDSRIAFTFFTKILASTMRTLVPEFFFMRV 234 (660)
T ss_pred hcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHh-----cCCCCceEEEEeehHHHHHHHHHHHHHHHHHHh
Confidence 3344556665433334444 5667789999976433222221 223566999999999999999988877642
Q ss_pred -----CCCCceEEecCCCCCchhHHhhc---CCCcEEEeC----hHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchH
Q 047890 555 -----SSRLSCTCLYGGAPKGPQLRELD---QGADIVVAT----PGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEP 622 (1134)
Q Consensus 555 -----~~~i~v~~l~GG~~~~~~l~~l~---~~~dIIVaT----PerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~ 622 (1134)
...+.++...||..+......+. .-..+-+.- ..-+..-+....-...-+++|.|||++. |-.
T Consensus 235 e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QD-----FP~ 309 (660)
T COG3972 235 EKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQD-----FPQ 309 (660)
T ss_pred hcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEeccccc-----CCH
Confidence 11233444455554432211111 111111111 1111222212222356689999999996 444
Q ss_pred HHHHHHHhCCC
Q 047890 623 QIRKIVNEMPP 633 (1134)
Q Consensus 623 ~i~~IL~~l~~ 633 (1134)
.+.+++..+.+
T Consensus 310 ~F~~Lcf~~tk 320 (660)
T COG3972 310 SFIDLCFMVTK 320 (660)
T ss_pred HHHHHHHHHhc
Confidence 44444444333
No 390
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.15 E-value=0.34 Score=59.57 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=15.9
Q ss_pred EEEEccCCCchhHHHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAF 516 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal 516 (1134)
+|+.+|.|+|||.++.+.+-
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999988655433
No 391
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.01 E-value=0.56 Score=58.29 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-ccee
Q 047890 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VAAR 763 (1134)
Q Consensus 690 ~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl~~ 763 (1134)
-.+..++..+..+.++.+.++|.-.|+..+..|.+ ++.+..+.|.+.-++|.++++...+|+++|+|.|. .+-.
T Consensus 299 VA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 299 VALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 44667777788899999999998777766665533 57799999999999999999999999999999995 5566
Q ss_pred ccccCcceEEEe
Q 047890 764 GLDIKDIRVVIN 775 (1134)
Q Consensus 764 GLDIp~v~~VI~ 775 (1134)
.+++.++-+||.
T Consensus 379 ~V~F~~LgLVIi 390 (677)
T COG1200 379 KVEFHNLGLVII 390 (677)
T ss_pred ceeecceeEEEE
Confidence 788887777763
No 392
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.96 E-value=0.74 Score=54.37 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=28.9
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
.....+|||||+|.|... ..+.+.++++..+....+|++|..
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 356789999999987543 455677777776666655555544
No 393
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.91 E-value=0.22 Score=60.62 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=15.5
Q ss_pred EEEEccCCCchhHHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLIPA 515 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpa 515 (1134)
+|+.+|.|+|||.++.+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998765543
No 394
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.87 E-value=0.94 Score=54.12 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=25.0
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
+....+|||||+|.|.... ...+.+.++..+... ++++.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t-~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHA-IFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 4577899999999986432 234455555554444 3344444
No 395
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.84 E-value=0.58 Score=56.09 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
+.-+.++++||+|||.++...+..++.... .....+|.+.+.-+ -..+.+..++...++.+..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~----~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~v---------- 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG----ADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRSI---------- 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC----CCeEEEEecCCcch--hHHHHHHHHHHHcCCceecC----------
Confidence 345788899999999886554443322110 12234555555222 11222333333333332221
Q ss_pred HhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc-cCchHHHHHHHHhCCCCceEEEEeccCchh-HHHH
Q 047890 574 RELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKD-VRKI 651 (1134)
Q Consensus 574 ~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~-~gf~~~i~~IL~~l~~~~qiLllSATl~~~-v~~l 651 (1134)
.++..+...+. .+.+.++|+||.+=+.-. ......+..+.........+|+++||.... +.++
T Consensus 255 -----------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 255 -----------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred -----------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 22222222222 245678899998643211 112233333333233344578899996443 4445
Q ss_pred HHhh
Q 047890 652 ASDL 655 (1134)
Q Consensus 652 ~~~~ 655 (1134)
+..+
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 5444
No 396
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.83 E-value=1.1 Score=49.98 Aligned_cols=113 Identities=19% Similarity=0.166 Sum_probs=60.5
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc---HHHHHHHHHHHHHhccCCCCceEEecCCCCCc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT---RELATQIQDEANKFGRSSRLSCTCLYGGAPKG 570 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT---reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~ 570 (1134)
+.-++|.|.+|.|||..++-.++..+.. .+..|+|++-- .+|+..+...+. ++....+..+....
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~------~~~~vly~SlEm~~~~l~~R~la~~s------~v~~~~i~~g~l~~ 86 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN------GGYPVLYFSLEMSEEELAARLLARLS------GVPYNKIRSGDLSD 86 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT------TSSEEEEEESSS-HHHHHHHHHHHHH------TSTHHHHHCCGCHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh------cCCeEEEEcCCCCHHHHHHHHHHHhh------cchhhhhhccccCH
Confidence 3457888999999998877777666652 24689998863 333333322221 12222222222111
Q ss_pred hhHH-------hhcCCCcEEEeC----hHHHHHHHHhcccCCCCeEEEEEcchhhhhcc
Q 047890 571 PQLR-------ELDQGADIVVAT----PGRLNDILEMKKIDFGQVSLLVLDEADRMLDM 618 (1134)
Q Consensus 571 ~~l~-------~l~~~~dIIVaT----PerL~~lL~~~~l~l~~l~lVVIDEAHrll~~ 618 (1134)
.... .+....-++..+ .+.|.+.+.........+++||||=.|.|...
T Consensus 87 ~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 87 EEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 2111 122222222333 34555555433333378899999999987663
No 397
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.76 E-value=1 Score=54.25 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=18.0
Q ss_pred EEEEccCCCchhHHHHHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~ 518 (1134)
+++++++|+|||.++.-.+..+
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6778999999999977666554
No 398
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=1.2 Score=53.85 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=23.8
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
.+|+.+|.|||||..+...++. ..-|.|=||+|.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~---------S~FPFvKiiSpe 573 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALS---------SDFPFVKIISPE 573 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhh---------cCCCeEEEeChH
Confidence 5899999999999654433222 255678788874
No 399
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.73 E-value=0.54 Score=63.11 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=64.2
Q ss_pred HHHHhcCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cceeccccCc
Q 047890 696 LRAQERGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VAARGLDIKD 769 (1134)
Q Consensus 696 lk~~~~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl~~GLDIp~ 769 (1134)
...+..+.++||.|+|+..|..+++.|.+ .+.+..+++..+.+++.++++.+++|+++|||+|. ++...+++.+
T Consensus 643 ~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~ 722 (1147)
T PRK10689 643 FLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKD 722 (1147)
T ss_pred HHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhh
Confidence 33445678999999999999998887754 24567889999999999999999999999999994 5555566777
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+.+||.
T Consensus 723 L~lLVI 728 (1147)
T PRK10689 723 LGLLIV 728 (1147)
T ss_pred CCEEEE
Confidence 777663
No 400
>PF05729 NACHT: NACHT domain
Probab=91.67 E-value=2.6 Score=42.68 Aligned_cols=23 Identities=26% Similarity=0.092 Sum_probs=16.9
Q ss_pred CEEEEccCCCchhHHHHHHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~ 518 (1134)
-++|.++.|+|||..+...+..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 36889999999998755444433
No 401
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.66 E-value=2 Score=45.46 Aligned_cols=39 Identities=18% Similarity=0.363 Sum_probs=25.0
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEE
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMY 640 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLll 640 (1134)
.....+|||||+|.|... ..+.+.+.++..+....+|++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 456789999999997653 234455666665555544444
No 402
>PRK04195 replication factor C large subunit; Provisional
Probab=91.65 E-value=0.93 Score=55.52 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
.+.+||.+|.|+|||.++-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3679999999999997643
No 403
>PRK07413 hypothetical protein; Validated
Probab=91.60 E-value=4.4 Score=47.94 Aligned_cols=112 Identities=22% Similarity=0.248 Sum_probs=63.5
Q ss_pred cCCCCeEEEEEcchhhhhccCc--hHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccce
Q 047890 599 IDFGQVSLLVLDEADRMLDMGF--EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAI 676 (1134)
Q Consensus 599 l~l~~l~lVVIDEAHrll~~gf--~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i 676 (1134)
+.-..+++|||||+-..++.++ ...+..+|...+...-+|+.--..|+++.+++...- +...+.-...+.+......
T Consensus 121 i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlVT-Em~~iKHp~~~~~~~~~~~ 199 (382)
T PRK07413 121 IASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLHS-EMRPHRRPTASELGVPFNS 199 (382)
T ss_pred HhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCeeE-EeceecCCCcCCCCcccCC
Confidence 3346789999999999888775 456777788777777666666667777777664431 1111111011111111111
Q ss_pred --eeEEEecchhHH-HHHHHHHHHHHhcCC------EEEE--EeCc
Q 047890 677 --TQHVEVVPQMEK-ERRLQQILRAQERGS------RVII--FCST 711 (1134)
Q Consensus 677 --~~~~~~v~~~ek-~~~L~~llk~~~~~~------kvLV--F~nT 711 (1134)
..++..-+.+-| ..++-..++....+. +|+| |...
T Consensus 200 ~g~i~VYTG~GKGKTTAAlGlAlRA~G~G~~~~~~~rV~ivQFlKg 245 (382)
T PRK07413 200 SGGIEIYTGEGKGKSTSALGKALQAIGRGISQDKSHRVLILQWLKG 245 (382)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHhcCCCCcccCceEEEEEECCC
Confidence 112223333333 456777788888775 6766 5554
No 404
>CHL00181 cbbX CbbX; Provisional
Probab=91.57 E-value=1.2 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=17.8
Q ss_pred CCCEEEEccCCCchhHHHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAF 516 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal 516 (1134)
+.++|+.+++|+|||.++-+.+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999988655433
No 405
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.51 E-value=7.6 Score=45.94 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=27.7
Q ss_pred CeEEEEEcchhhhhccCchHHHHHHHHhC-CCCceEEEEeccCchhH
Q 047890 603 QVSLLVLDEADRMLDMGFEPQIRKIVNEM-PPHRQTLMYTATWPKDV 648 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~gf~~~i~~IL~~l-~~~~qiLllSATl~~~v 648 (1134)
+..+|+|||+|. -|-+-.-.+..+++.+ ....-+|..|-+.|.++
T Consensus 127 ~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 127 ESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred cCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 556899999994 3322234445555544 34556777788877654
No 406
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.43 E-value=0.94 Score=49.39 Aligned_cols=52 Identities=31% Similarity=0.339 Sum_probs=37.2
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
+.-+++.+++|+|||..++-.+...++ .+.+++|++-. +-.+++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~-------~g~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK-------NGEKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEECC-CCHHHHHHHHHHcC
Confidence 456788999999999876655555444 35678888764 55677777777764
No 407
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.38 E-value=0.93 Score=52.70 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHcC-----CCEEEEccCCCchhHHHHHHHHHH
Q 047890 480 PTPIQAQTWPIALQG-----RDIVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 480 prpiQ~eaI~~il~g-----rdvLl~ApTGSGKTla~llpal~~ 518 (1134)
++||+..+|..+... ..+|+.++.|.|||..+...+-.+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 368888888888743 347899999999998766554443
No 408
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.36 E-value=0.93 Score=50.91 Aligned_cols=37 Identities=22% Similarity=0.097 Sum_probs=27.5
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
+.-++|.+++|+|||..++-.++..++ .+.+++|++-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~-------~Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS-------RGNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-------CCCcEEEEEe
Confidence 466888999999999887765555443 3557888874
No 409
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.95 Score=54.64 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=26.0
Q ss_pred CeEEEEEcchhhhhccC------c-hHHHHHHHH---hCCCCceEEEEecc
Q 047890 603 QVSLLVLDEADRMLDMG------F-EPQIRKIVN---EMPPHRQTLMYTAT 643 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~g------f-~~~i~~IL~---~l~~~~qiLllSAT 643 (1134)
.-.+|.|||.|.+...- + ...|..+|. -+..+--||++-||
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigAT 446 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGAT 446 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEecc
Confidence 34578999999875422 1 222333433 34566679999999
No 410
>PRK06904 replicative DNA helicase; Validated
Probab=91.34 E-value=2 Score=52.48 Aligned_cols=115 Identities=20% Similarity=0.109 Sum_probs=58.0
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCC-CCCchh
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGG-APKGPQ 572 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG-~~~~~~ 572 (1134)
+.-+||.|.+|.|||..++-.+...+.. .+..|+|++.- .-..|+...+-.... ++....+..+ .-....
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASLS--RVDQTKIRTGQNLDQQD 291 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHhccCCCCCHHH
Confidence 4557778999999998665555444332 34567777653 344555544433221 2222222222 111111
Q ss_pred H-------HhhcCCCcEEE-----eChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 573 L-------RELDQGADIVV-----ATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 573 l-------~~l~~~~dIIV-----aTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
. ..+.....+.| .|...|...+.........+++||||=.+.|..
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 1 12222333555 244445443332222223688999998887753
No 411
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.28 E-value=0.88 Score=52.73 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=31.0
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
....+++|||+||+|... ..+.+.+++++-+.+..+|++|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 456889999999998654 467788888887777655555544
No 412
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.24 E-value=0.7 Score=56.14 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=25.0
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
....+|||||+|.|.... .+.+.++++..+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 567899999999876432 345566666655555444433
No 413
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=91.21 E-value=0.094 Score=67.92 Aligned_cols=71 Identities=32% Similarity=0.295 Sum_probs=41.8
Q ss_pred cccCCCc-hhh-hhHhhhcchhhhhhcccchhhhccccccccCCCCccccccccccccCCCCCCCCC------ccccccc
Q 047890 79 HSMQPNG-MMI-KQQMTQATPQEVQQVSQLPQQLGSMAAQVSDQHDPQQQGSQLGQSMQHPGKFAPQ------MRPQMMQ 150 (1134)
Q Consensus 79 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (1134)
-+|.+.| .|. +|-|.+++-.++-+.++-.|+++++ +.|+|-..-+-|+|+|+- |.|+ +|++|-+
T Consensus 2000 ~~m~p~g~~mp~~qs~q~~~~~~~l~p~~~~q~~ps~-------~~~~q~m~~~~q~~s~q~-~~~~s~~~~~~~~~m~p 2071 (2220)
T KOG3598|consen 2000 SSMPPSGPPMPMGQSMQSAGATQQLQPMQKHQMGPSM-------SGMNQNMGGMNQSMSHQA-PPPYSSTNEMNRPLMNP 2071 (2220)
T ss_pred CCcCCCCCCCCcccccccCCCceecCchHhhccCCcc-------cccccchhhhhccccCCC-CCCcccccccchhhccc
Confidence 4555555 233 5555555555555566667777766 667777777788888873 3332 4555555
Q ss_pred CCCccCC
Q 047890 151 YPVQEMP 157 (1134)
Q Consensus 151 ~~~~~~~ 157 (1134)
|-++-+.
T Consensus 2072 y~~p~~~ 2078 (2220)
T KOG3598|consen 2072 YGGPHFA 2078 (2220)
T ss_pred ccCCccc
Confidence 5544433
No 414
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=0.6 Score=55.67 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=26.5
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQD 547 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~ 547 (1134)
+.+|+.+|.|+|||+.+-..+.. .+....-|.++ +|+.-|.-
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE----------~~atff~iSas-sLtsK~~G 228 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATE----------SGATFFNISAS-SLTSKYVG 228 (428)
T ss_pred chhheecCCCCchHHHHHHHHhh----------hcceEeeccHH-HhhhhccC
Confidence 57899999999999765443333 23345556664 55554433
No 415
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.12 E-value=0.9 Score=57.27 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=24.9
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
....+|||||||.|... -.+.+.+.++..+... ++++.++
T Consensus 120 ~~~KViIIDEad~Lt~~-a~naLLK~LEePp~~t-vfIL~t~ 159 (620)
T PRK14948 120 ARWKVYVIDECHMLSTA-AFNALLKTLEEPPPRV-VFVLATT 159 (620)
T ss_pred CCceEEEEECccccCHH-HHHHHHHHHhcCCcCe-EEEEEeC
Confidence 46789999999987543 2345566666654444 3334344
No 416
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.11 E-value=2.5 Score=44.66 Aligned_cols=139 Identities=20% Similarity=0.262 Sum_probs=63.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhh
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l 576 (1134)
+.|---.|=|||.+++=.++..+ ..+.+|+|+-=.+. ..-.-|+..+.....+.+.. .+.........-
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~-------G~G~rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~~--~g~~f~~~~~~~ 74 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA-------GHGMRVLIVQFLKG--GRYSGELKALKKLPNVEIER--FGKGFVWRMNEE 74 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH-------CTT--EEEEESS----SS--HHHHHHGGGT--EEEE----TT----GGGH
T ss_pred EEEEeCCCCCchHHHHHHHHHHH-------hCCCEEEEEEEecC--CCCcCHHHHHHhCCeEEEEE--cCCcccccCCCc
Confidence 34445689999999887776654 25678888865444 11122333222111122211 111000000000
Q ss_pred cCCCcEEEeChHHHHHHHH--hcccCCCCeEEEEEcchhhhhccCc--hHHHHHHHHhCCCCceEEEEeccCchhHHHHH
Q 047890 577 DQGADIVVATPGRLNDILE--MKKIDFGQVSLLVLDEADRMLDMGF--EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652 (1134)
Q Consensus 577 ~~~~dIIVaTPerL~~lL~--~~~l~l~~l~lVVIDEAHrll~~gf--~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~ 652 (1134)
. .+ .....+.+. ...+.-..+++||+||+-..++.++ ...+..+|+..+...-+|+.--..++++.+++
T Consensus 75 ~--~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 75 E--ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp H--HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred H--HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 0 00 111122221 2233456799999999998888775 45677778877777766666556666666665
Q ss_pred H
Q 047890 653 S 653 (1134)
Q Consensus 653 ~ 653 (1134)
.
T Consensus 148 D 148 (172)
T PF02572_consen 148 D 148 (172)
T ss_dssp S
T ss_pred C
Confidence 4
No 417
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.01 E-value=0.78 Score=56.64 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
.....+|||||||.|... ..+.+.++++..+....+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 357899999999987643 3456677777777776555554
No 418
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=3 Score=47.32 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=64.7
Q ss_pred HHHHcC-----CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEe
Q 047890 489 PIALQG-----RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCL 563 (1134)
Q Consensus 489 ~~il~g-----rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l 563 (1134)
|.+..| +.+||.+|.|+||+..+-..+.. .+ .+++-+-+..|+.-|.-+-+++..
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE----------An-STFFSvSSSDLvSKWmGESEkLVk--------- 215 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE----------AN-STFFSVSSSDLVSKWMGESEKLVK--------- 215 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh----------cC-CceEEeehHHHHHHHhccHHHHHH---------
Confidence 445555 45899999999999543222111 22 567777777888888776666521
Q ss_pred cCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCc---hHHHHHHHHhC--------C
Q 047890 564 YGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGF---EPQIRKIVNEM--------P 632 (1134)
Q Consensus 564 ~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf---~~~i~~IL~~l--------~ 632 (1134)
.|+.+... ..-++|+|||+|.|+...- .+..++|...+ .
T Consensus 216 -------------------------nLFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~ 265 (439)
T KOG0739|consen 216 -------------------------NLFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN 265 (439)
T ss_pred -------------------------HHHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc
Confidence 12233322 2346899999998875431 12223332221 2
Q ss_pred CCceEEEEeccCchhHH
Q 047890 633 PHRQTLMYTATWPKDVR 649 (1134)
Q Consensus 633 ~~~qiLllSATl~~~v~ 649 (1134)
.+-.+|.|-||-.+.+.
T Consensus 266 d~~gvLVLgATNiPw~L 282 (439)
T KOG0739|consen 266 DNDGVLVLGATNIPWVL 282 (439)
T ss_pred CCCceEEEecCCCchhH
Confidence 34458899999544443
No 419
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.97 E-value=3.3 Score=47.27 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=24.8
Q ss_pred CeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 603 QVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
...+|||||+|.+... ....+..+++.......+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999987543 2345666666666666555544
No 420
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.94 E-value=1.1 Score=51.20 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=17.0
Q ss_pred CCCEEEEccCCCchhHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llp 514 (1134)
+.++|+.+++|+|||.++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 357999999999999876443
No 421
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=90.85 E-value=0.3 Score=66.01 Aligned_cols=93 Identities=24% Similarity=0.348 Sum_probs=73.3
Q ss_pred EEEEEeCcHHHHHHHHHHhcCC--CcEEEecCCCC-----------hhHHHHHHHHHhcCCCCeeeecccceeccccCcc
Q 047890 704 RVIIFCSTKRLCDQLARSIGRN--FGAIAIHGDKS-----------QGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770 (1134)
Q Consensus 704 kvLVF~nT~~~ae~La~~L~~~--~~v~~LhG~ms-----------~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v 770 (1134)
..||||+....+..+.+.+.+. +.+..+.|.+. ...+.+++..|...++.+|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4578999887777777666431 22222444332 1236789999999999999999999999999999
Q ss_pred eEEEeecCCCChhhHHHhhhccCcCC
Q 047890 771 RVVINYDFPNGVEDYVHRIGRTGRAG 796 (1134)
Q Consensus 771 ~~VI~~d~P~s~~~yiQRiGRagR~G 796 (1134)
+.|+.++.|.....|+|..||+-+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997754
No 422
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=90.67 E-value=2.1 Score=47.34 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=27.1
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhc-----CCCCCCCEEEEEcc
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLH-----NNPRNGPTVLVLAP 537 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~-----~~~~~g~kvLVLvP 537 (1134)
-.|+.++.|+|||..++-.++....-.. .......+|||++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 3688999999999887766655432110 11124568888883
No 423
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=90.57 E-value=0.71 Score=49.41 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=23.8
Q ss_pred CeEEEEEcchhhhhccCch--HHHHHHHHhC---CC-CceEEEEeccCchhHHHHHHh
Q 047890 603 QVSLLVLDEADRMLDMGFE--PQIRKIVNEM---PP-HRQTLMYTATWPKDVRKIASD 654 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~gf~--~~i~~IL~~l---~~-~~qiLllSATl~~~v~~l~~~ 654 (1134)
.-.+|||||||.+...... .....++..+ .. ..-++++|-.+ ..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHH
Confidence 4579999999997764322 1222333333 22 33567777664 344444444
No 424
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.56 E-value=0.9 Score=59.61 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC---CC--cEEEecCCCChhHHHHHHHHHhcCCCCeeeec-cccee
Q 047890 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR---NF--GAIAIHGDKSQGERDWVLNQFRSGKSPILVAT-DVAAR 763 (1134)
Q Consensus 690 ~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~---~~--~v~~LhG~ms~~eR~~il~~FrsGe~~VLVAT-dvl~~ 763 (1134)
-++.+..+....+++|.|.++|.-.|+.-++.|++ +| .+..+..-.+.++...+++..++|+++|||.| .++..
T Consensus 631 VAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~k 710 (1139)
T COG1197 631 VAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSK 710 (1139)
T ss_pred HHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCC
Confidence 34666777778889999999999999888888865 33 46778888899999999999999999999999 68888
Q ss_pred ccccCcceEEEe
Q 047890 764 GLDIKDIRVVIN 775 (1134)
Q Consensus 764 GLDIp~v~~VI~ 775 (1134)
.|-+.++-+||.
T Consensus 711 dv~FkdLGLlII 722 (1139)
T COG1197 711 DVKFKDLGLLII 722 (1139)
T ss_pred CcEEecCCeEEE
Confidence 899998888774
No 425
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=90.47 E-value=0.76 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=23.3
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
.++.+||.||||...+--+ ..+.. .+.++|++-|.
T Consensus 4 ~~i~GpM~sGKS~eLi~~~-~~~~~------~~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRI-HRYEI------AGKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHH-HHHHH------TT-EEEEEEES
T ss_pred EEEECCcCChhHHHHHHHH-HHHHh------CCCeEEEEEec
Confidence 4778999999998643322 22222 56689999885
No 426
>PHA00350 putative assembly protein
Probab=90.45 E-value=1.3 Score=52.64 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=17.3
Q ss_pred EEEEccCCCchhHHHHH-HHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLI-PAFILLR 520 (1134)
Q Consensus 497 vLl~ApTGSGKTla~ll-pal~~L~ 520 (1134)
.|+.+..|||||+.++- .++..++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 47889999999988764 3444443
No 427
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=90.43 E-value=0.43 Score=57.21 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=18.8
Q ss_pred CCCCccccchhhhhcCCCCCCCCCCc
Q 047890 201 GHQYPHQQLQYTAYQQGIPPQGKQSS 226 (1134)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (1134)
..+.-.|.|+||+--++|-|++--+-
T Consensus 279 ~~~~~~qp~q~mgh~n~mgpPgdrp~ 304 (742)
T KOG4274|consen 279 PSQALPQPLQQMGHTNHMGPPGDRPQ 304 (742)
T ss_pred hhhhccchhhhcccccCCCCCCCCCc
Confidence 34556788899999999988854443
No 428
>PHA00012 I assembly protein
Probab=90.42 E-value=3.1 Score=48.07 Aligned_cols=24 Identities=33% Similarity=0.209 Sum_probs=19.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLR 520 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~ 520 (1134)
.++.+..|+|||+.++.-++..++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 578899999999998876666665
No 429
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.39 E-value=1.9 Score=51.76 Aligned_cols=38 Identities=32% Similarity=0.199 Sum_probs=26.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
+.-+||.|.+|+|||..++-.++..... .+..|+|++-
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~------~g~~v~~fSl 231 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALR------EGKPVLFFSL 231 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcEEEEEC
Confidence 4567888999999998776666554321 3456888773
No 430
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.36 E-value=0.35 Score=60.08 Aligned_cols=80 Identities=21% Similarity=0.433 Sum_probs=62.6
Q ss_pred HHHHhcCCCCeeeecccceeccccCcceEE--------EeecCCCChhhHHHhhhccCcCCC-cceeEEEecc---cchH
Q 047890 744 LNQFRSGKSPILVATDVAARGLDIKDIRVV--------INYDFPNGVEDYVHRIGRTGRAGA-TGVAHTFFSE---QDSK 811 (1134)
Q Consensus 744 l~~FrsGe~~VLVATdvl~~GLDIp~v~~V--------I~~d~P~s~~~yiQRiGRagR~Gq-kG~~ii~~~~---~d~~ 811 (1134)
-++|.+|+..|-|-+.+++-||.+..-..| |-+.+||+.+.-+|..||+.|.++ .+.-|+|+.. .+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 357889999999999999999999765554 447899999999999999999986 4556666643 4666
Q ss_pred HHHHHHHHHHhh
Q 047890 812 YAADLVKVLEGA 823 (1134)
Q Consensus 812 ~~~~l~k~L~~~ 823 (1134)
++.-+.+.|+..
T Consensus 930 FAS~VAKRLESL 941 (1300)
T KOG1513|consen 930 FASIVAKRLESL 941 (1300)
T ss_pred HHHHHHHHHHhh
Confidence 666666666653
No 431
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.24 E-value=3.6 Score=47.61 Aligned_cols=132 Identities=19% Similarity=0.237 Sum_probs=71.5
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhh
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l 576 (1134)
+|+++-.|+|||.+..-.+..+.. .+.+||+.+-- ..-.-..+.|+.|+...++.++.-.-|.+...
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~-------~g~~VllaA~D-TFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa----- 208 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQ-------QGKSVLLAAGD-TFRAAAIEQLEVWGERLGVPVISGKEGADPAA----- 208 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHH-------CCCeEEEEecc-hHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH-----
Confidence 677899999999986655544433 45566655531 12222233444554444454433211221111
Q ss_pred cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc-CchHHHHHHHHhCCCCc------eEEEEeccCchhHH
Q 047890 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHR------QTLMYTATWPKDVR 649 (1134)
Q Consensus 577 ~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~~------qiLllSATl~~~v~ 649 (1134)
| ..+.+... ...++++|+||=|=||-+. ++...+.+|.+-+.+.. -++.+-||.-.+-.
T Consensus 209 -----V-------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 209 -----V-------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred -----H-------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH
Confidence 1 11222211 2347789999999987654 35666777766554433 34555888766655
Q ss_pred HHHHhh
Q 047890 650 KIASDL 655 (1134)
Q Consensus 650 ~l~~~~ 655 (1134)
.-++.|
T Consensus 275 ~QAk~F 280 (340)
T COG0552 275 SQAKIF 280 (340)
T ss_pred HHHHHH
Confidence 544444
No 432
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.11 E-value=1.7 Score=54.89 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=28.0
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
+....+|||||+|.|... ..+.+.++++..+... +++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCe-EEEEEeC
Confidence 457889999999988643 3456667777766655 4445445
No 433
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=90.09 E-value=1.3 Score=54.16 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHc------C----CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHH
Q 047890 478 SSPTPIQAQTWPIALQ------G----RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQD 547 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~------g----rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~ 547 (1134)
..+-|||.-++-.|+- + +.++|..+-+-|||..+...++..+.-.. ..+-.+.|++++.+-+.+..+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---RSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---hcCCcEEEEeccHHHHHHhhH
Confidence 3588999999988872 1 34678889999999765544443322111 356789999999999999998
Q ss_pred HHHHhcc
Q 047890 548 EANKFGR 554 (1134)
Q Consensus 548 el~kl~~ 554 (1134)
.++....
T Consensus 137 ~ar~mv~ 143 (546)
T COG4626 137 PARDMVK 143 (546)
T ss_pred HHHHHHH
Confidence 8876543
No 434
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.05 E-value=1.6 Score=47.21 Aligned_cols=43 Identities=21% Similarity=0.106 Sum_probs=30.1
Q ss_pred HHHHHHc-----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 487 TWPIALQ-----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 487 aI~~il~-----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
.+..++. +.-++|.++.|+|||..++..+...+. .+.+++|+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~-------~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG-------QGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEE
Confidence 3555564 345788999999999887766655543 355788874
No 435
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.04 E-value=1.3 Score=56.26 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=36.5
Q ss_pred eEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccC
Q 047890 604 VSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 604 l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl 644 (1134)
--+||||..|++.+......+..+++..+.+..+|+.|-+-
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 34899999999999888889999999999999888888874
No 436
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.97 E-value=3.4 Score=47.57 Aligned_cols=149 Identities=16% Similarity=0.066 Sum_probs=61.3
Q ss_pred EEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHH---HHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 498 VAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQ---DEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 498 Ll~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~---~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
|+.++-|+|||.++++.++..+.... ....++++..+..|...+. ..+..+... .+.+..... .....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP----PGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEW----NDRKI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS----S--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-----SSEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC----CCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccC----CCCcE
Confidence 56788999999987665555444211 1245555544455555422 233333333 222211100 00001
Q ss_pred hhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc--CchhHHHHH
Q 047890 575 ELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT--WPKDVRKIA 652 (1134)
Q Consensus 575 ~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT--l~~~v~~l~ 652 (1134)
.+.++..|.+.+-..-.. ...+.=..+++|||||+-.+.+..+...+...+....... .+++|.| ......++.
T Consensus 72 ~~~nG~~i~~~~~~~~~~---~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~~~~~~ 147 (384)
T PF03237_consen 72 ILPNGSRIQFRGADSPDS---GDNIRGFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGWFYEIF 147 (384)
T ss_dssp EETTS-EEEEES-----S---HHHHHTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHHH
T ss_pred EecCceEEEEeccccccc---cccccccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCceeeee
Confidence 113455566666322100 0111124677999999887655444444444433332222 2244444 223344555
Q ss_pred HhhccCC
Q 047890 653 SDLLVNP 659 (1134)
Q Consensus 653 ~~~l~~~ 659 (1134)
...+.+.
T Consensus 148 ~~~~~~~ 154 (384)
T PF03237_consen 148 QRNLDDD 154 (384)
T ss_dssp HHHHCTS
T ss_pred ehhhcCC
Confidence 5444443
No 437
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.87 E-value=1.6 Score=51.99 Aligned_cols=132 Identities=23% Similarity=0.268 Sum_probs=76.5
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc-ccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHh
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA-PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv-PTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~ 575 (1134)
+++++=-|||||.++.-++..+.+ .+.++++|+ .+.--| .++.|+.++...++.+... +...+..
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk-------~~~kvllVaaD~~RpA--A~eQL~~La~q~~v~~f~~--~~~~~Pv--- 168 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK-------KGKKVLLVAADTYRPA--AIEQLKQLAEQVGVPFFGS--GTEKDPV--- 168 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH-------cCCceEEEecccCChH--HHHHHHHHHHHcCCceecC--CCCCCHH---
Confidence 677899999999998876665543 344555554 432211 2344445544444544333 1111111
Q ss_pred hcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh-ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHh
Q 047890 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASD 654 (1134)
Q Consensus 576 l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll-~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~ 654 (1134)
+ ....-+. .+....+++||||=|-|+- +..+...+..|-+.+.++--++.+-|+.-.+..+.++.
T Consensus 169 -----~-------Iak~al~--~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~a 234 (451)
T COG0541 169 -----E-------IAKAALE--KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKA 234 (451)
T ss_pred -----H-------HHHHHHH--HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHH
Confidence 0 0011121 1223356889999988754 33456677777777777777888888887777777766
Q ss_pred hc
Q 047890 655 LL 656 (1134)
Q Consensus 655 ~l 656 (1134)
|.
T Consensus 235 F~ 236 (451)
T COG0541 235 FN 236 (451)
T ss_pred Hh
Confidence 53
No 438
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.73 E-value=0.093 Score=52.56 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHHH
Q 047890 496 DIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~l 512 (1134)
++||.+++|+|||..+-
T Consensus 1 ~vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47999999999997643
No 439
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.73 E-value=1.6 Score=46.91 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=27.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
+.-+++.+++|+|||..++..+...+. .+.++++|.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~-------~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR-------QGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEECC
Confidence 356788999999999987766655543 34577777764
No 440
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.52 E-value=1.1 Score=55.82 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=24.9
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
....+|||||||.|... -...+.++++..+...-+|++|
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 35789999999987543 2345666666655555444434
No 441
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=89.45 E-value=0.44 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=18.7
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILL 519 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L 519 (1134)
+.++++++||+|||.++...+..+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577889999999988766555443
No 442
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.44 E-value=2.1 Score=52.56 Aligned_cols=53 Identities=26% Similarity=0.218 Sum_probs=40.4
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.+.-+||.+++|+|||+.++--+...++ .+.++||++ ..|-..|+...++.++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~-------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA-------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 3467899999999999876665555544 456888888 4577888888888875
No 443
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=89.43 E-value=1.6 Score=50.65 Aligned_cols=42 Identities=24% Similarity=0.143 Sum_probs=29.6
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~ 543 (1134)
+-++|.++.|+|||..++..+....+ .+.+|+||.....+..
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~-------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQK-------AGGTAAFIDAEHALDP 97 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEEcccchhHH
Confidence 56788999999999887766655544 3557888766544443
No 444
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.24 E-value=1.5 Score=50.68 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=33.4
Q ss_pred HHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEec
Q 047890 588 GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTA 642 (1134)
Q Consensus 588 erL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSA 642 (1134)
..+.+.+....+ .....+|||||||.|... -.+.+.++++.-+ +..+|++|.
T Consensus 110 r~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 110 REIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 344444443333 357899999999987643 4567788888876 554454443
No 445
>PRK09354 recA recombinase A; Provisional
Probab=89.18 E-value=1.9 Score=50.52 Aligned_cols=50 Identities=26% Similarity=0.216 Sum_probs=35.4
Q ss_pred HHHHHHc------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHH
Q 047890 487 TWPIALQ------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 487 aI~~il~------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~ 543 (1134)
.|..+|. ++-++|.++.|+|||..++..+...++ .+.++|||..-.++-.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-------AGGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEECCccchHH
Confidence 4555565 356778999999999988776666544 4568888887655554
No 446
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.18 E-value=0.3 Score=51.27 Aligned_cols=45 Identities=31% Similarity=0.307 Sum_probs=30.6
Q ss_pred HHhhcCCCcEEEeChHHHHHHHHhcccC--CCCeEEEEEcchhhhhc
Q 047890 573 LRELDQGADIVVATPGRLNDILEMKKID--FGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 573 l~~l~~~~dIIVaTPerL~~lL~~~~l~--l~~l~lVVIDEAHrll~ 617 (1134)
.+.....++|||+++.-|++-.....+. ..+-.+|||||||.|.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3445556899999999887765433332 23457999999998765
No 447
>PRK08840 replicative DNA helicase; Provisional
Probab=89.17 E-value=3.2 Score=50.64 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=56.2
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ 572 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~ 572 (1134)
.+.-+||.|.+|.|||..++-.+...... .+..|+|++-- .=..|+...+-.... ++...-+..+.-....
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e 286 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLASLS--RVDQTKIRTGQLDDED 286 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHHhcCCCCHHH
Confidence 34557788999999998766555554321 34567777653 334444444332211 1222112122211111
Q ss_pred HH-------hhcCCCcEEEe-----ChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 573 LR-------ELDQGADIVVA-----TPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 573 l~-------~l~~~~dIIVa-----TPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
.. .+.....+.|. |...|...+..-......+++||||=.|.|.
T Consensus 287 ~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 287 WARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 11 22122344443 2333433332222222358899999988774
No 448
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=88.91 E-value=1.7 Score=53.56 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.4
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
.+.+|+.+|+|+|||+.+-.
T Consensus 216 p~GILLyGPPGTGKT~LAKA 235 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKA 235 (512)
T ss_pred CcceEEECCCCCcHHHHHHH
Confidence 36799999999999986443
No 449
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.86 E-value=3.7 Score=53.35 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
+..+++.+|+|+|||..+-.
T Consensus 347 ~~~lll~GppG~GKT~lAk~ 366 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKS 366 (775)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34688999999999976443
No 450
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.82 E-value=1.3 Score=53.78 Aligned_cols=52 Identities=31% Similarity=0.288 Sum_probs=35.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
+.-++|.+++|+|||..++..+..... .+.++||+.-. +-..|+...+.+++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~-------~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAK-------NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHh-------cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 456788999999999876655444332 23478888764 55677776666653
No 451
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.74 E-value=2.6 Score=55.36 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=32.9
Q ss_pred eEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCc
Q 047890 604 VSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645 (1134)
Q Consensus 604 l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~ 645 (1134)
--+||||++|.+.+......+..++...+.+..+|+.|-+.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 348999999988655556678888888888888888887743
No 452
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=88.74 E-value=2 Score=46.87 Aligned_cols=44 Identities=27% Similarity=0.208 Sum_probs=30.7
Q ss_pred HHHHHc-----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 488 WPIALQ-----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 488 I~~il~-----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
+..++. +.-+++.+++|+|||..++..++..+. .+.+++|+.-.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~-------~~~~v~yi~~e 60 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK-------NGKKVIYIDTE 60 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEECC
Confidence 455554 356788999999999887776666554 34577777643
No 453
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=88.63 E-value=4.1 Score=43.56 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=39.2
Q ss_pred CCCeEEEEEcchhhhhccCc--hHHHHHHHHhCCCCceEEEEeccCchhHHHHHHh
Q 047890 601 FGQVSLLVLDEADRMLDMGF--EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASD 654 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf--~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~ 654 (1134)
-..+++||+||.-..+..++ .+.+..+|...+....+|+.--..+.++.+++..
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 34689999999998887775 3566777777777776666665577777766543
No 454
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=88.58 E-value=1.2 Score=50.19 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.6
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
.++|+.+|.|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 5799999999999975443
No 455
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.53 E-value=1.8 Score=47.02 Aligned_cols=44 Identities=23% Similarity=0.047 Sum_probs=27.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
+.-+.|.+++|+|||..++..+...+... .......++++|.-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~-~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG-ELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccc-ccCCCcceEEEEecC
Confidence 45678899999999988776555543311 000112577887764
No 456
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=88.43 E-value=2.6 Score=46.97 Aligned_cols=40 Identities=30% Similarity=0.424 Sum_probs=24.3
Q ss_pred HHcCC-CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 491 ALQGR-DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 491 il~gr-dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
++... .++|++++|||||...+. ++..+.. .-..+++++|
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~-lL~~~~~------~f~~I~l~t~ 49 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKS-LLYYLRH------KFDHIFLITP 49 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHH-HHHhhcc------cCCEEEEEec
Confidence 44443 788999999999975333 3332221 2245666666
No 457
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=88.40 E-value=0.99 Score=52.39 Aligned_cols=50 Identities=30% Similarity=0.232 Sum_probs=34.8
Q ss_pred HHHHHHc------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHH
Q 047890 487 TWPIALQ------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 487 aI~~il~------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~ 543 (1134)
.|..++. ++-++|.++.|+|||..++..+....+ .+.+++||.....+-.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~-------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-------LGGTVAFIDAEHALDP 97 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCCEEEECccccHHH
Confidence 4555555 356788999999999887766665543 3567888887655544
No 458
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.39 E-value=8.9 Score=41.93 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc---cHHHHHHHHHHHHHhccCC-------CCceEEec
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP---TRELATQIQDEANKFGRSS-------RLSCTCLY 564 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP---TreLa~Q~~~el~kl~~~~-------~i~v~~l~ 564 (1134)
.=+|+.++-|+|||+.+.-.++-.|. .+.++.+++- +++...| .+.+.... .+.+..+.
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~-------~g~~v~yvsTe~T~refi~q----m~sl~ydv~~~~l~G~l~~~~~~ 97 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLM-------NGYRVTYVSTELTVREFIKQ----MESLSYDVSDFLLSGRLLFFPVN 97 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHh-------CCceEEEEEechhHHHHHHH----HHhcCCCchHHHhcceeEEEEec
Confidence 34788899999999988887777775 4556777663 3444444 23322110 11111110
Q ss_pred -CCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHH---HhCCCCceEEEE
Q 047890 565 -GGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIV---NEMPPHRQTLMY 640 (1134)
Q Consensus 565 -GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL---~~l~~~~qiLll 640 (1134)
.+...... +-..+++.+.. .....+-++||||-...++...-...+..++ ..+...-++|++
T Consensus 98 ~~~~~~~~~-------------~~~~~L~~l~~-~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIil 163 (235)
T COG2874 98 LEPVNWGRR-------------SARKLLDLLLE-FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIIL 163 (235)
T ss_pred ccccccChH-------------HHHHHHHHHHh-hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEE
Confidence 00000000 01122222211 1123456789999888776554333343333 334445579999
Q ss_pred ecc---CchhHHHHHHhh
Q 047890 641 TAT---WPKDVRKIASDL 655 (1134)
Q Consensus 641 SAT---l~~~v~~l~~~~ 655 (1134)
|+- +++++.-.++..
T Consensus 164 Tvhp~~l~e~~~~rirs~ 181 (235)
T COG2874 164 TVHPSALDEDVLTRIRSA 181 (235)
T ss_pred EeChhhcCHHHHHHHHHh
Confidence 987 344444444433
No 459
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.37 E-value=0.47 Score=51.60 Aligned_cols=14 Identities=43% Similarity=0.444 Sum_probs=12.1
Q ss_pred EEEEccCCCchhHH
Q 047890 497 IVAIAKTGSGKTLG 510 (1134)
Q Consensus 497 vLl~ApTGSGKTla 510 (1134)
++|.+..|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47889999999975
No 460
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.30 E-value=2.2 Score=51.42 Aligned_cols=112 Identities=20% Similarity=0.106 Sum_probs=55.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
+.-+||.|.+|+|||..++-.++..+.. .+..|+|++-- .-..++.+.+...... +....+..+.-.....
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~------~g~~vl~~SlE-m~~~~i~~R~~~~~~~--v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK------EGKPVAFFSLE-MSAEQLAMRMLSSESR--VDSQKLRTGKLSDEDW 265 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh------CCCeEEEEeCc-CCHHHHHHHHHHHhcC--CCHHHhccCCCCHHHH
Confidence 3457888999999998766555554431 34567777753 3334444444333222 2211111121111111
Q ss_pred -------HhhcCCCcEEEe-----ChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 574 -------RELDQGADIVVA-----TPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 574 -------~~l~~~~dIIVa-----TPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
..+.. ..+.|. |.+.|...+...... ..+++||||=.+.|.
T Consensus 266 ~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 266 EKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 12222 334442 344454443322222 347899999888764
No 461
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.24 E-value=2.8 Score=52.35 Aligned_cols=41 Identities=17% Similarity=0.342 Sum_probs=25.1
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
.....+|||||+|.|.... .+.+.+.++..+... ++++.+|
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp~~~-vfI~~tt 157 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPPPYI-VFIFATT 157 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCCCCE-EEEEecC
Confidence 4578899999999876432 344555566544444 3334434
No 462
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.21 E-value=4.9 Score=46.68 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=30.9
Q ss_pred CCeEEEEEcchhhhhcc-CchHHHHHHHHhC------CCCceEEEEeccCchhHHHHHHhh
Q 047890 602 GQVSLLVLDEADRMLDM-GFEPQIRKIVNEM------PPHRQTLMYTATWPKDVRKIASDL 655 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~-gf~~~i~~IL~~l------~~~~qiLllSATl~~~v~~l~~~~ 655 (1134)
.++++||||=+-++... .....+.++...+ .+...++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 56789999988875422 2234444444321 233457889999655443334443
No 463
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=88.20 E-value=0.39 Score=51.53 Aligned_cols=38 Identities=37% Similarity=0.715 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCCCcceEeecCCcCceeeccCCCCCCC
Q 047890 20 PTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPPP 58 (1134)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (1134)
-.||.+|+.+.++.-| .||+|-||..||||-|....++
T Consensus 127 EgLppGW~rv~s~e~G-tyY~~~~~k~tQy~HPc~~s~~ 164 (271)
T KOG1891|consen 127 EGLPPGWKRVFSPEKG-TYYYHEEMKRTQYEHPCISSPI 164 (271)
T ss_pred ccCCcchhhccccccc-eeeeecccchhhhcCCCCCCCc
Confidence 3589999999888887 5888999999999999876654
No 464
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=88.11 E-value=0.26 Score=55.83 Aligned_cols=10 Identities=40% Similarity=0.195 Sum_probs=6.1
Q ss_pred EEEEcchhhh
Q 047890 606 LLVLDEADRM 615 (1134)
Q Consensus 606 lVVIDEAHrl 615 (1134)
.-|-||+++.
T Consensus 58 ~kvHd~~lk~ 67 (319)
T KOG0796|consen 58 PKVHDEALKA 67 (319)
T ss_pred cchhhHHHHH
Confidence 4566777653
No 465
>PRK08506 replicative DNA helicase; Provisional
Probab=88.06 E-value=2.2 Score=52.23 Aligned_cols=111 Identities=20% Similarity=0.126 Sum_probs=56.4
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH-
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL- 573 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l- 573 (1134)
.-+||.|.+|.|||..++-.+...+. .+..|+|++.- .=..|+...+-.... ++....+..+.-.....
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~-------~g~~V~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALN-------QDKGVAFFSLE-MPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHh-------cCCcEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHH
Confidence 45778899999999877666655443 34567777653 334444444433211 12211111121111111
Q ss_pred ------HhhcCCCcEEEe-----ChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 574 ------RELDQGADIVVA-----TPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 574 ------~~l~~~~dIIVa-----TPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
..+. ...+.|. |...|...+..-......+++||||=.+.|.
T Consensus 263 ~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 1122 2344442 3444444443222222358899999988765
No 466
>PRK07004 replicative DNA helicase; Provisional
Probab=87.87 E-value=2.2 Score=51.95 Aligned_cols=113 Identities=18% Similarity=0.167 Sum_probs=55.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
+.-+||.|.+|+|||..++-.+...... .+..|+|++-- .=..|+...+-... .++....+..+.-.....
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~------~~~~v~~fSlE-M~~~ql~~R~la~~--~~v~~~~i~~g~l~~~e~ 283 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVE------YGLPVAVFSME-MPGTQLAMRMLGSV--GRLDQHRMRTGRLTDEDW 283 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHH------cCCeEEEEeCC-CCHHHHHHHHHHhh--cCCCHHHHhcCCCCHHHH
Confidence 3557888999999998766555544321 34567777642 23334443332211 112222122222222222
Q ss_pred -------HhhcCCCcEEEe-----ChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 574 -------RELDQGADIVVA-----TPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 574 -------~~l~~~~dIIVa-----TPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
..+ ....+.|. |+..+...+..-......+++||||=.+.|.
T Consensus 284 ~~~~~a~~~l-~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 284 PKLTHAVQKM-SEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 122 22445553 3444444332222223357899999988775
No 467
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.82 E-value=2.3 Score=50.65 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.4
Q ss_pred HcCCCEEEEccCCCchhHHHH
Q 047890 492 LQGRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~l 512 (1134)
-.|..++|++++|+|||..+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCCEEEEECCCCCChhHHHH
Confidence 367889999999999997533
No 468
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.65 E-value=2.4 Score=49.36 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHH
Q 047890 495 RDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ 511 (1134)
+.+|+-+|.|+|||+.+
T Consensus 186 KGVLLYGPPGTGKTLLA 202 (406)
T COG1222 186 KGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 78999999999999864
No 469
>PRK05748 replicative DNA helicase; Provisional
Probab=87.63 E-value=2.7 Score=51.04 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=56.0
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH-HhccCCCCceEEecCCCCCchhH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN-KFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~-kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
.-+||.|.+|.|||..++-.+...+.. .+..|+|++.- .-..|+...+- .++ ++....+..+.-.....
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~------~g~~v~~fSlE-ms~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~ 273 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATK------TDKNVAIFSLE-MGAESLVMRMLCAEG---NIDAQRLRTGQLTDDDW 273 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHh------CCCeEEEEeCC-CCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHH
Confidence 457888999999998766555544321 34567777642 33444444443 222 12221122222122221
Q ss_pred H-------hhcCCCcEEEe-----ChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 574 R-------ELDQGADIVVA-----TPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 574 ~-------~l~~~~dIIVa-----TPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
. .+. ...+.|. |++.+...+........++++||||=.+.|.
T Consensus 274 ~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 274 PKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1 122 2345443 3344444333222222368899999999774
No 470
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.55 E-value=1.3 Score=57.12 Aligned_cols=61 Identities=25% Similarity=0.398 Sum_probs=50.1
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-----C-CcEEE-ecCCCChhHHHHHHHHHhcCCCCeeeecccc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-----N-FGAIA-IHGDKSQGERDWVLNQFRSGKSPILVATDVA 761 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-----~-~~v~~-LhG~ms~~eR~~il~~FrsGe~~VLVATdvl 761 (1134)
.+++++|+++|.-.+.+.++.|.. + +.+.. +|+.++.+++++++++|.+|+.+|||+|..+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 468999999999888888877732 1 33322 9999999999999999999999999999643
No 471
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.54 E-value=2.9 Score=53.29 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=25.5
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
.....++||||||.|... ....+.+.++..+....+|++|
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEEEEc
Confidence 357789999999987643 3445566666655555334333
No 472
>PRK06620 hypothetical protein; Validated
Probab=87.53 E-value=1.3 Score=48.44 Aligned_cols=106 Identities=12% Similarity=0.171 Sum_probs=56.7
Q ss_pred CEEEEEcccHHHHHHHHHHHHH-hccCCCCceEEecCCC--CCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEE
Q 047890 530 PTVLVLAPTRELATQIQDEANK-FGRSSRLSCTCLYGGA--PKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSL 606 (1134)
Q Consensus 530 ~kvLVLvPTreLa~Q~~~el~k-l~~~~~i~v~~l~GG~--~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~l 606 (1134)
.--+|+.++.+++..+...+.+ |..........++|.. .+...+..+.......+.+...... ..+...++
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~------~~~~~~d~ 88 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE------EILEKYNA 88 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch------hHHhcCCE
Confidence 3457888878888777766654 3211112457778744 3444444444444444444222111 01235678
Q ss_pred EEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCc
Q 047890 607 LVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWP 645 (1134)
Q Consensus 607 VVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~ 645 (1134)
|+|||+|.+.+ ..+..+++.+......|++|+|.+
T Consensus 89 lliDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~ 123 (214)
T PRK06620 89 FIIEDIENWQE----PALLHIFNIINEKQKYLLLTSSDK 123 (214)
T ss_pred EEEeccccchH----HHHHHHHHHHHhcCCEEEEEcCCC
Confidence 99999996532 345555555544333566666633
No 473
>PRK10263 DNA translocase FtsK; Provisional
Probab=87.46 E-value=5.6 Score=53.37 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=26.6
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
-++||.+.||||||.+.-..|+.++.... ....++++|=|.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~s---PeeVrl~LIDPK 1051 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQ---PEDVRFIMIDPK 1051 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCC---ccceEEEEECCC
Confidence 58999999999999886655555544321 233455555554
No 474
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=87.19 E-value=2.3 Score=49.52 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEE
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLM 639 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLl 639 (1134)
+....+|||||+|.+.... .+.+.+.++..+....+|+
T Consensus 115 ~~~~~vviidea~~l~~~~-~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKSA-FNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred cCCceEEEEeChhhcCHHH-HHHHHHHHhCCccceeEEE
Confidence 3466799999999875432 2334444555444443333
No 475
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=87.09 E-value=0.76 Score=48.67 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=29.2
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCC-ceEEEEecc
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH-RQTLMYTAT 643 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~-~qiLllSAT 643 (1134)
.+.+++|+||...-++......+.+++..+... .++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 466899999999988876666666666655333 556666553
No 476
>PRK08760 replicative DNA helicase; Provisional
Probab=87.05 E-value=2.7 Score=51.47 Aligned_cols=141 Identities=17% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCc
Q 047890 491 ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKG 570 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~ 570 (1134)
+..+.-+||.|.+|.|||..++-.+...+.. .+..|+|++.- .-..|+...+...... +....+..+.-..
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~------~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~--i~~~~i~~g~l~~ 296 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIK------SKKGVAVFSME-MSASQLAMRLISSNGR--INAQRLRTGALED 296 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHh------cCCceEEEecc-CCHHHHHHHHHHhhCC--CcHHHHhcCCCCH
Q ss_pred hhHHhhcCC------CcEEEe-----ChHHHHHHHHhcccCCCCeEEEEEcchhhh----hccCchHHHHHHHHhCCC--
Q 047890 571 PQLRELDQG------ADIVVA-----TPGRLNDILEMKKIDFGQVSLLVLDEADRM----LDMGFEPQIRKIVNEMPP-- 633 (1134)
Q Consensus 571 ~~l~~l~~~------~dIIVa-----TPerL~~lL~~~~l~l~~l~lVVIDEAHrl----l~~gf~~~i~~IL~~l~~-- 633 (1134)
.....+... ..+.|. |++.|...+..-... ..+++||||=.+.| ........+..|...++.
T Consensus 297 ~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~-~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lA 375 (476)
T PRK08760 297 EDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKRE-HDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLA 375 (476)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHH
Q ss_pred ---CceEEEEe
Q 047890 634 ---HRQTLMYT 641 (1134)
Q Consensus 634 ---~~qiLllS 641 (1134)
++.+|++|
T Consensus 376 kel~ipVi~ls 386 (476)
T PRK08760 376 KELNVPVIALS 386 (476)
T ss_pred HHhCCEEEEee
No 477
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=87.04 E-value=1.5 Score=50.95 Aligned_cols=66 Identities=26% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH
Q 047890 469 VASMHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL 541 (1134)
Q Consensus 469 l~~l~~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL 541 (1134)
+..+...|+ +++.|.+.|..+... .++|++++||||||..+-..+-......... ++++|-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~-----rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTE-----RVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc-----eEEEEcCCCcc
No 478
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=86.84 E-value=5.8 Score=49.14 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh--cCCE---EEEEeCcHHHHHHHHHHh-----cC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeee
Q 047890 689 ERRLQQILRAQE--RGSR---VIIFCSTKRLCDQLARSI-----GR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757 (1134)
Q Consensus 689 ~~~L~~llk~~~--~~~k---vLVF~nT~~~ae~La~~L-----~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVA 757 (1134)
...+.-+++.+. .... +||+++|++.|..+++.+ .. .+.++.+.|+++...+...++. | .+|||+
T Consensus 81 ~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVa 156 (513)
T COG0513 81 AAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVA 156 (513)
T ss_pred HHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEE
Q ss_pred c-----ccceec-cccCcceEEE------eecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHH
Q 047890 758 T-----DVAARG-LDIKDIRVVI------NYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVL 820 (1134)
Q Consensus 758 T-----dvl~~G-LDIp~v~~VI------~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L 820 (1134)
| |.+.++ +|+..+.++| ++|+ ...+.+..|-..... -.-+++++..-...+..+.+.+
T Consensus 157 TPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~--Gf~~~i~~I~~~~p~---~~qtllfSAT~~~~i~~l~~~~ 226 (513)
T COG0513 157 TPGRLLDLIKRGKLDLSGVETLVLDEADRMLDM--GFIDDIEKILKALPP---DRQTLLFSATMPDDIRELARRY 226 (513)
T ss_pred CccHHHHHHHcCCcchhhcCEEEeccHhhhhcC--CCHHHHHHHHHhCCc---ccEEEEEecCCCHHHHHHHHHH
No 479
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=86.82 E-value=4.1 Score=50.02 Aligned_cols=170 Identities=17% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
+.+|+.+|.|+|||+.+-..+... ....+-|..+ +|...|.-+.++.
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~---------~~~fi~v~~~--~l~sk~vGesek~---------------------- 323 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALES---------RSRFISVKGS--ELLSKWVGESEKN---------------------- 323 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhC---------CCeEEEeeCH--HHhccccchHHHH----------------------
Q ss_pred hhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC----------chHHHHHHHHhCCCCceEEEEecc-
Q 047890 575 ELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG----------FEPQIRKIVNEMPPHRQTLMYTAT- 643 (1134)
Q Consensus 575 ~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g----------f~~~i~~IL~~l~~~~qiLllSAT- 643 (1134)
+..++.... ...-.+|+|||+|.+...- ....+...++.+.....++++-||
T Consensus 324 ---------------ir~~F~~A~--~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN 386 (494)
T COG0464 324 ---------------IRELFEKAR--KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATN 386 (494)
T ss_pred ---------------HHHHHHHHH--cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCC
Q ss_pred CchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHH
Q 047890 644 WPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARS 721 (1134)
Q Consensus 644 l~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~ 721 (1134)
.+..+...+..-..-...+.+...+.......+..+..-.......+.....+.....+ -+-.++..+++.
T Consensus 387 ~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~-------~sgadi~~i~~e 457 (494)
T COG0464 387 RPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG-------YSGADIAALVRE 457 (494)
T ss_pred CccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC-------CCHHHHHHHHHH
No 480
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=86.82 E-value=3.4 Score=48.13 Aligned_cols=128 Identities=19% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHcC-------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCC--------------CCEEEEEcc--cHH
Q 047890 484 QAQTWPIALQG-------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRN--------------GPTVLVLAP--TRE 540 (1134)
Q Consensus 484 Q~eaI~~il~g-------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~--------------g~kvLVLvP--Tre 540 (1134)
|..++..+..- +-+|+.++.|+|||..+...+-.++......... .+-+.++.| ...
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i 90 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSI 90 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccC
Q ss_pred HHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCc
Q 047890 541 LATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGF 620 (1134)
Q Consensus 541 La~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf 620 (1134)
-++++.+.++.+ ...-......+|||||+|+|....
T Consensus 91 ~id~ir~l~~~~-------------------------------------------~~~~~~~~~kvviI~~a~~~~~~a- 126 (329)
T PRK08058 91 KKDQIRYLKEEF-------------------------------------------SKSGVESNKKVYIIEHADKMTASA- 126 (329)
T ss_pred CHHHHHHHHHHH-------------------------------------------hhCCcccCceEEEeehHhhhCHHH-
Q ss_pred hHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhh
Q 047890 621 EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDL 655 (1134)
Q Consensus 621 ~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~ 655 (1134)
.+.+.++++.-+....+|++|.....-+..+..+.
T Consensus 127 ~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc 161 (329)
T PRK08058 127 ANSLLKFLEEPSGGTTAILLTENKHQILPTILSRC 161 (329)
T ss_pred HHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhc
No 481
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=4.1 Score=49.46 Aligned_cols=134 Identities=16% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEE--------EEcccHHHHHHHHHHHHHhccCCCCceEEecCC
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVL--------VLAPTRELATQIQDEANKFGRSSRLSCTCLYGG 566 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvL--------VLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG 566 (1134)
+.+|+-+|.|+|||+ +...+-++.+. +.|+++ ||--+.+-+..++...+.-....+-+
T Consensus 257 KGiLLyGPPGTGKTL-----iARqIGkMLNA--rePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~------- 322 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTL-----IARQIGKMLNA--REPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGAN------- 322 (744)
T ss_pred eeEEEECCCCCChhH-----HHHHHHHHhcC--CCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCcc-------
Q ss_pred CCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC---------chHHHHHHHHhCC-----
Q 047890 567 APKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG---------FEPQIRKIVNEMP----- 632 (1134)
Q Consensus 567 ~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g---------f~~~i~~IL~~l~----- 632 (1134)
+.+.+|||||.|.++..- ....+..+|..+.
T Consensus 323 -----------------------------------SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL 367 (744)
T KOG0741|consen 323 -----------------------------------SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL 367 (744)
T ss_pred -----------------------------------CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh
Q ss_pred CCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEe
Q 047890 633 PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEV 682 (1134)
Q Consensus 633 ~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~ 682 (1134)
.+.-+|+||.- ++++.+.|..|..+++...-.+.....-.+.+.+
T Consensus 368 NNILVIGMTNR-----~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~I 412 (744)
T KOG0741|consen 368 NNILVIGMTNR-----KDLIDEALLRPGRLEVQMEISLPDEKGRLQILKI 412 (744)
T ss_pred hcEEEEeccCc-----hhhHHHHhcCCCceEEEEEEeCCCccCceEEEEh
No 482
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=86.66 E-value=5.7 Score=46.67 Aligned_cols=142 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHcCCCE------EEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 481 TPIQAQTWPIALQGRDI------VAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 481 rpiQ~eaI~~il~grdv------Ll~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+..|...+..++..+++ ++.+.+|+|||.+ ...+++. .+...+++++ .-+-.|..-+++++.
T Consensus 11 Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~----~r~~l~~------~n~~~vw~n~--~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 11 RESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL----VRQLLRK------LNLENVWLNC--VECFTYAILLEKILN 78 (438)
T ss_pred hHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH----HHHHHhh------cCCcceeeeh--HHhccHHHHHHHHHH
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh--cccCCCCeEEEEEcchhhhhccC--chHHHHHHHHh
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM--KKIDFGQVSLLVLDEADRMLDMG--FEPQIRKIVNE 630 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~--~~l~l~~l~lVVIDEAHrll~~g--f~~~i~~IL~~ 630 (1134)
... .+-..+.........+.. ++..+.. .....+..-+||+|-|+.+.|++ ....+.++-+.
T Consensus 79 ~~~---~~d~dg~~~~~~~en~~d-----------~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el 144 (438)
T KOG2543|consen 79 KSQ---LADKDGDKVEGDAENFSD-----------FIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYEL 144 (438)
T ss_pred Hhc---cCCCchhhhhhHHHHHHH-----------HHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHH
Q ss_pred CCCCceEEEEeccCchhH
Q 047890 631 MPPHRQTLMYTATWPKDV 648 (1134)
Q Consensus 631 l~~~~qiLllSATl~~~v 648 (1134)
++...-.|++|++..+..
T Consensus 145 ~~~~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 145 LNEPTIVIILSAPSCEKQ 162 (438)
T ss_pred hCCCceEEEEeccccHHH
No 483
>PRK08006 replicative DNA helicase; Provisional
Probab=86.61 E-value=6.4 Score=48.18 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
|+.+-.+.=-+.+.-+..+.-+||.|.+|.|||..++-.+...... .+..|+|++.--.-.+-+.+.+....
T Consensus 206 Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~------~g~~V~~fSlEM~~~ql~~Rlla~~~-- 277 (471)
T PRK08006 206 GVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML------QDKPVLIFSLEMPGEQIMMRMLASLS-- 277 (471)
T ss_pred cccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh------cCCeEEEEeccCCHHHHHHHHHHHhc--
Q ss_pred CCCceEEecCCCCCchhHHhhc-------CCCcEEEe-----ChHHHHHHHHhcccCCCCeEEEEEcchhhhh----ccC
Q 047890 556 SRLSCTCLYGGAPKGPQLRELD-------QGADIVVA-----TPGRLNDILEMKKIDFGQVSLLVLDEADRML----DMG 619 (1134)
Q Consensus 556 ~~i~v~~l~GG~~~~~~l~~l~-------~~~dIIVa-----TPerL~~lL~~~~l~l~~l~lVVIDEAHrll----~~g 619 (1134)
++...-+..+.-.......+. ....+.|- |...+...+..-......+++||||=.+.|. ...
T Consensus 278 -~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~ 356 (471)
T PRK08006 278 -RVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDN 356 (471)
T ss_pred -CCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCC
Q ss_pred chHHHHHHHHhCCC-----CceEEEEe
Q 047890 620 FEPQIRKIVNEMPP-----HRQTLMYT 641 (1134)
Q Consensus 620 f~~~i~~IL~~l~~-----~~qiLllS 641 (1134)
-...+..|...++. ++.+|++|
T Consensus 357 r~~ei~~isr~LK~lAkel~ipVi~Ls 383 (471)
T PRK08006 357 RTLEIAEISRSLKALAKELQVPVVALS 383 (471)
T ss_pred cHHHHHHHHHHHHHHHHHhCCeEEEEE
No 484
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=86.59 E-value=4 Score=51.14 Aligned_cols=137 Identities=23% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCCCcCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047890 869 RGGMRDGGFGGRADTRDGGFGG-------RGSVRDGGFGGRGGMRDGGFGGRGGMRDGGFGGYEGRSGMFSGRGNRGRGF 941 (1134)
Q Consensus 869 ~gg~~~gg~gg~~~~~~gg~gg-------~gg~~~gg~gg~gg~~~gg~gg~gg~~~~~~gg~~g~~g~~~g~~~~g~g~ 941 (1134)
.+|-+.=+-+.--.++.|++|+ +||.+|-+|.-.-+.+.--.-+.-..+.-..-+.+|+.|.-+|+.-+.+..
T Consensus 689 ~~~~~~m~P~~~~~g~pg~~~~PPPP~~~~~gpgG~~f~P~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~g~~~~~r~~ 768 (894)
T KOG0132|consen 689 RGGMRHMPPPPSHRGGPGGHGIPPPPFFDRGGPGGPPFPPENPRGRLQRQSPQWNREQRGMRGGGGAGPDGGREHFDRDR 768 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcccccccCCccccccccccCCCCCCCCCCccccccCCc
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCCC
Q 047890 942 GGPAGGNVGWGRNDRGPHDRYNNMDGRGRGRGRGRFDNRRDIADRSSRGRSRSRSPDRVRTWGY 1005 (1134)
Q Consensus 942 gg~~g~~~~~~r~~R~~rdr~r~~~~r~r~r~r~r~~~rr~r~~r~srsrsRSrSrsRsrsr~~ 1005 (1134)
+.++.+++++++++..+++|+.+.+.|.......++++++.|++..+..+++++.-.|+.++.+
T Consensus 769 ~r~~~g~~~~g~~g~~~Rer~G~~~~Rd~~~Rd~r~~~~~~rrR~~r~~~~~D~~~rre~~~~r 832 (894)
T KOG0132|consen 769 GRDRFGRRRQGDRGARDRERYGNDDRRDDSNRDRRSDRREHRRRSDRDRDSRDRETRREPSYER 832 (894)
T ss_pred ccccccccccccccchhhhhhcCCccccccccccccccccccccCccccccchhhhhhcccccC
No 485
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.57 E-value=2.6 Score=53.21 Aligned_cols=114 Identities=10% Similarity=0.095 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhh
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l 576 (1134)
+||.+|+|+|||.++ +.|+..+...+.+| ++.+..............+
T Consensus 113 llL~GP~GsGKTTl~---------------------------~~la~~l~~~~~Ew-----~npv~~~~~~~~~~~~~s~ 160 (637)
T TIGR00602 113 LLITGPSGCGKSTTI---------------------------KILSKELGIQVQEW-----SNPTLPDFQKNDHKVTLSL 160 (637)
T ss_pred EEEECCCCCCHHHHH---------------------------HHHHHHhhhHHHHH-----hhhhhhcccccccccchhh
Q ss_pred cCCCcEEEeChHHHHHHHHhcccCC--------CCeEEEEEcchhhhhccCchHHHHHHHH--hCCCCceEEEEecc
Q 047890 577 DQGADIVVATPGRLNDILEMKKIDF--------GQVSLLVLDEADRMLDMGFEPQIRKIVN--EMPPHRQTLMYTAT 643 (1134)
Q Consensus 577 ~~~~dIIVaTPerL~~lL~~~~l~l--------~~l~lVVIDEAHrll~~gf~~~i~~IL~--~l~~~~qiLllSAT 643 (1134)
..........-+.|..++....-.+ .+..+|+|||++.+... ....+..++. ......-.|++..|
T Consensus 161 ~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~~~~lq~lLr~~~~e~~~~pLI~I~T 236 (637)
T TIGR00602 161 ESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-DTRALHEILRWKYVSIGRCPLVFIIT 236 (637)
T ss_pred hhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-hHHHHHHHHHHHhhcCCCceEEEEec
No 486
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.55 E-value=1.2 Score=50.91 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
.++|+.++.|+|||..+...+-
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~---------------------------------------------------------- 52 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIAN---------------------------------------------------------- 52 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHH----------------------------------------------------------
Q ss_pred hhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEec
Q 047890 575 ELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTA 642 (1134)
Q Consensus 575 ~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSA 642 (1134)
.+...+.++.+++......+......+....+|+|||+|.+. ......++..+......+++.+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl~iDEi~~l~----~~~~e~l~~~~~~~~~~~v~~~ 116 (305)
T TIGR00635 53 EMGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLS----PAVEELLYPAMEDFRLDIVIGK 116 (305)
T ss_pred HhCCCEEEeccchhcCchhHHHHHHhcccCCEEEEehHhhhC----HHHHHHhhHHHhhhheeeeecc
No 487
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=86.54 E-value=1.9 Score=50.08 Aligned_cols=66 Identities=23% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH
Q 047890 469 VASMHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL 541 (1134)
Q Consensus 469 l~~l~~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL 541 (1134)
+..+...|. +++.|.+.|..+... .++|++++||||||. ++..|...........++++|=.+.||
T Consensus 120 l~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-----ll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 120 LDDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-----LANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-----HHHHHHHHHhcCCCCceEEEecCCccc
No 488
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.49 E-value=74 Score=40.10 Aligned_cols=267 Identities=17% Similarity=0.062 Sum_probs=0.0
Q ss_pred CEEEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeeccc--------ceeccccCcceEEE
Q 047890 703 SRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDV--------AARGLDIKDIRVVI 774 (1134)
Q Consensus 703 ~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdv--------l~~GLDIp~v~~VI 774 (1134)
...++++........|...|........|.=-.+.+.-+.+.+.+.+..+.|++-..- +..-+.-..+++||
T Consensus 233 ~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLV 312 (572)
T PRK04537 233 RQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILV 312 (572)
T ss_pred eEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEE
Q ss_pred e-------ecCC--------CChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhhcC
Q 047890 775 N-------YDFP--------NGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALRCG 839 (1134)
Q Consensus 775 ~-------~d~P--------~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r~g 839 (1134)
- +|+| .-+.+....+=|+||+|+.|.--.-+.--.......+.++.+....+++......... .
T Consensus 313 aTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~-~ 391 (572)
T PRK04537 313 ATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTAELL-T 391 (572)
T ss_pred EehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccChhhc-c
Q ss_pred CCCcccCCCCcccccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047890 840 PGFGKDRGGVSRFNAGGGGGGGGHWDSGGRGGMRDGGFGGRADTRDGGFGGRGSVRDGGFGGRGGMRDGGFGGRGGMRDG 919 (1134)
Q Consensus 840 ~g~Gk~~gG~~R~~~gggggggg~~~~gg~gg~~~gg~gg~~~~~~gg~gg~gg~~~gg~gg~gg~~~gg~gg~gg~~~~ 919 (1134)
.-.........-...-...+...+.........+....+.++++++|++.++|.. .++.|+...+.++..+.++....+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~ 470 (572)
T PRK04537 392 PLPRPPRVPVEGEEADDEAGDSVGTIFREAREQRAAEEQRRGGGRSGPGGGSRSG-SVGGGGRRDGAGADGKPRPRRKPR 470 (572)
T ss_pred ccccccccccccccccccccccccccCCcccccCcccccCCCCCCCCCCCCcCCc-ccCCCCCCCcccCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047890 920 GFGGYEGRSGMFSGRGNRGRGFGGPAGGNVGWGRNDRGPHDRYNNMDGRGRG 971 (1134)
Q Consensus 920 ~~gg~~g~~g~~~g~~~~g~g~gg~~g~~~~~~r~~R~~rdr~r~~~~r~r~ 971 (1134)
-.+.......+.........-.........+..+..+..+.++|....++..
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (572)
T PRK04537 471 VEGEADAAAAGAETPVVAAAAAQAPGVVAADGERAPRKRRRRRNGRPVEGAE 522 (572)
T ss_pred cccccCCCCCCCCCCccccccccccCCCCCCCCCCCCCccCCCCCCCCCCCC
No 489
>PRK05636 replicative DNA helicase; Provisional
Probab=86.38 E-value=3.4 Score=50.99 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCc
Q 047890 491 ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKG 570 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~ 570 (1134)
+..+.-+||.|.+|.|||..++-.+...+.+ .+..|+|++.- .-..|+...+ +....++....+..+.-..
T Consensus 262 l~~G~Liiiaarpg~GKT~~al~~a~~~a~~------~g~~v~~fSlE-Ms~~ql~~R~--ls~~s~v~~~~i~~g~l~~ 332 (505)
T PRK05636 262 LRGGQMIIVAARPGVGKSTLALDFMRSASIK------HNKASVIFSLE-MSKSEIVMRL--LSAEAEVRLSDMRGGKMDE 332 (505)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEEee-CCHHHHHHHH--HHHhcCCCHHHHhcCCCCH
Q ss_pred hhHHhhcCC------CcEEEe-----ChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC-----------chHHHHHHH
Q 047890 571 PQLRELDQG------ADIVVA-----TPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG-----------FEPQIRKIV 628 (1134)
Q Consensus 571 ~~l~~l~~~------~dIIVa-----TPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g-----------f~~~i~~IL 628 (1134)
.....+... ..|.|. |...|...+...+.. ..+++||||=.|.|.... +...++.+.
T Consensus 333 ~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~-~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lA 411 (505)
T PRK05636 333 DAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQK-HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLA 411 (505)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHH
Q ss_pred HhCCCCceEEEEe
Q 047890 629 NEMPPHRQTLMYT 641 (1134)
Q Consensus 629 ~~l~~~~qiLllS 641 (1134)
..+ ++.+|++|
T Consensus 412 kel--~ipVi~ls 422 (505)
T PRK05636 412 KEL--DVPLIAIS 422 (505)
T ss_pred HHh--CCeEEEEe
No 490
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=86.34 E-value=6.8 Score=44.74 Aligned_cols=207 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcC-------CCEEEE--ccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc-----ccHHHHHHHHHH
Q 047890 483 IQAQTWPIALQG-------RDIVAI--AKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA-----PTRELATQIQDE 548 (1134)
Q Consensus 483 iQ~eaI~~il~g-------rdvLl~--ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv-----PTreLa~Q~~~e 548 (1134)
.++-+++.+... +-+++. +.||+||..+.-+.+-...+... ..+.|...+ |...-++...++
T Consensus 90 a~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl----~S~~V~~fvat~hFP~~~~ie~Yk~e 165 (344)
T KOG2170|consen 90 AKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL----RSPFVHHFVATLHFPHASKIEDYKEE 165 (344)
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccc----cchhHHHhhhhccCCChHHHHHHHHH
Q ss_pred HHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHH
Q 047890 549 ANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIV 628 (1134)
Q Consensus 549 l~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL 628 (1134)
++++....--.| .-+++||||+|.|-.. ....|+-.|
T Consensus 166 L~~~v~~~v~~C------------------------------------------~rslFIFDE~DKmp~g-Lld~lkpfL 202 (344)
T KOG2170|consen 166 LKNRVRGTVQAC------------------------------------------QRSLFIFDEVDKLPPG-LLDVLKPFL 202 (344)
T ss_pred HHHHHHHHHHhc------------------------------------------CCceEEechhhhcCHh-HHHHHhhhh
Q ss_pred HhCC-------CCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhh--------------------cccceeeEEE
Q 047890 629 NEMP-------PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELA--------------------ANKAITQHVE 681 (1134)
Q Consensus 629 ~~l~-------~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~--------------------~~~~i~~~~~ 681 (1134)
...+ .+.-.|++|.+...++.+++.++..+....+-.....+. ....+..++.
T Consensus 203 dyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fI 282 (344)
T KOG2170|consen 203 DYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFI 282 (344)
T ss_pred ccccccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhcc
Q ss_pred ecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHh---cCCCcEEEecCCCChhHH
Q 047890 682 VVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSI---GRNFGAIAIHGDKSQGER 740 (1134)
Q Consensus 682 ~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L---~~~~~v~~LhG~ms~~eR 740 (1134)
.....+|.....-+-.+....+ ++...+.+++++..| .+.-++....|-.+...+
T Consensus 283 PFLPLek~hV~~C~r~el~~rg----~~~d~~~~erva~~l~ffp~~~k~Fs~sGCK~V~ak 340 (344)
T KOG2170|consen 283 PFLPLEKRHVRSCIRAELRKRG----LAPDQDFVERVANSLSFFPESSKLFSSSGCKRVDAK 340 (344)
T ss_pred CcCcccHHHHHHHHHHHHHhcc----cccchHHHHHHHHhhcccccccceeecccchhhhhh
No 491
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.18 E-value=4.8 Score=49.34 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEEccC------------CCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 485 AQTWPIALQGRDIVAIAKT------------GSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 485 ~eaI~~il~grdvLl~ApT------------GSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
++-...++.+--.|+++.+ ++||+..-++.+..++.. .-.|.+||.+-+.+-|.|++.+|.
T Consensus 336 EE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~-----g~~PP~lIfVQs~eRak~L~~~L~-- 408 (593)
T KOG0344|consen 336 EEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVAS-----GFKPPVLIFVQSKERAKQLFEELE-- 408 (593)
T ss_pred HHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhc-----cCCCCeEEEEecHHHHHHHHHHhh--
Q ss_pred ccCCCCceEEecCCC---CCchhHHhhcCC-CcEEEeChHHHHHHHHhcccCCCCeEEEEEcch
Q 047890 553 GRSSRLSCTCLYGGA---PKGPQLRELDQG-ADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA 612 (1134)
Q Consensus 553 ~~~~~i~v~~l~GG~---~~~~~l~~l~~~-~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEA 612 (1134)
...++++.++++.. ..++.+..+..+ ..|+||| +++..+ ++|.++++||.+..
T Consensus 409 -~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 409 -IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDF 465 (593)
T ss_pred -hccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCC
No 492
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=86.07 E-value=2.5 Score=53.78 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
..|++-|++|+... ...++|.|.-|||||.+...=+..++....-.+.. +|+|+=|+..|.++.+.+.++...
T Consensus 1 ~~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~---Il~vTFTnkAA~em~~Rl~~~~~~-- 73 (655)
T COG0210 1 SKLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQ---ILAITFTNKAAAEMRERLLKLLGL-- 73 (655)
T ss_pred CCCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHH---eeeeechHHHHHHHHHHHHHHhCc--
Q ss_pred CceEEecCCCCCchhHHhhcCCCc-EEEeChHHHHHHHHhcccC----CCCeEEEEEcchhhhh
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGAD-IVVATPGRLNDILEMKKID----FGQVSLLVLDEADRML 616 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~d-IIVaTPerL~~lL~~~~l~----l~~l~lVVIDEAHrll 616 (1134)
.... +.|+|...+...+-..... ..++.++=.|+.+.++
T Consensus 74 --------------------~~~~~~~v~TfHs~~~~~lr~~~~~~~~~~~~~i~d~~d~~~~~ 117 (655)
T COG0210 74 --------------------PAAEGLTVGTFHSFALRILRRHGERLGLNANFTILDSDDQLALI 117 (655)
T ss_pred --------------------ccccCcEEeeHHHHHHHHHHHHHHhcCCCCCCEEecHHHHHHHH
No 493
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=85.92 E-value=4.3 Score=43.17 Aligned_cols=139 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhh
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l 576 (1134)
+.|---.|-|||.+++=.++..+- .+.+|+|+-=.+.-...=...+.+.+. .+.....+....-.....
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAaG-------~G~rV~iiQFlKg~~~~GE~~~l~~~~----~v~~~~~g~~~~~~~~~~ 92 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIAG-------QGTPVLIVQFLKGGIQQGPDRPIQLGQ----NLDWVRCDLPRCLDTPHL 92 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhc-------CCCEEEEEEEecCCCcchHHHHHHhCC----CcEEEECCCCCeeeCCCc
Q ss_pred cCCCcEEEeChHHHHHHHH--hcccCCCCeEEEEEcchhhhhccC--chHHHHHHHHhCCCCceEEEEeccCchhHHHHH
Q 047890 577 DQGADIVVATPGRLNDILE--MKKIDFGQVSLLVLDEADRMLDMG--FEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIA 652 (1134)
Q Consensus 577 ~~~~dIIVaTPerL~~lL~--~~~l~l~~l~lVVIDEAHrll~~g--f~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~ 652 (1134)
..... ......+. ...+.-..+++||+||+-..++.+ -...+..+++..+...-+|+.--..|+++.+++
T Consensus 93 ~~~~~------~~~~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 93 DESEK------KALQELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CHHHH------HHHHHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
No 494
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=85.84 E-value=2.2 Score=49.50 Aligned_cols=84 Identities=27% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCcCCChhHhhhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCC-CEEEEccCCCchhHHHHHHHHHHHHHhc
Q 047890 445 PGVTDLSPAEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGR-DIVAIAKTGSGKTLGYLIPAFILLRQLH 523 (1134)
Q Consensus 445 p~i~~~~p~e~~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~gr-dvLl~ApTGSGKTla~llpal~~L~~~~ 523 (1134)
|.+.-.-+.-..+++..-.++...+-+. ..+++.+.+.|..+...+ ++|+++.|||||| ++|..+.
T Consensus 128 pPva~dGp~lsIRKf~k~~ltl~dli~~-----gt~~~~~a~~L~~av~~r~NILisGGTGSGKT--------TlLNal~ 194 (355)
T COG4962 128 PPVAIDGPTLSIRKFPKIKLTLLDLIIF-----GTMIRRAAKFLRRAVGIRCNILISGGTGSGKT--------TLLNALS 194 (355)
T ss_pred CccccCCCcccccccccccccHHHHHHc-----CCcCHHHHHHHHHHHhhceeEEEeCCCCCCHH--------HHHHHHH
Q ss_pred CCCCCCCEEEEEcccHHH
Q 047890 524 NNPRNGPTVLVLAPTREL 541 (1134)
Q Consensus 524 ~~~~~g~kvLVLvPTreL 541 (1134)
.......++|+|=.|.||
T Consensus 195 ~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 195 GFIDSDERVITIEDTAEL 212 (355)
T ss_pred hcCCCcccEEEEeehhhh
No 495
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.51 E-value=2.2 Score=47.82 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCc
Q 047890 491 ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKG 570 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~ 570 (1134)
+-.|..+++.++.|+|||.. +-.++............+++++..+.. ++.++.....-.+++...+....
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL----lr~I~n~l~~~~fdv~~~v~vI~er~~------ev~el~~~I~~~~v~~~~~~~~~ 82 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL----LQSIANAITKNHPEVYLIVLLIDERPE------EVTDMQRSVKGEVIASTFDEPPE 82 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH----HHHHHhccccccCCeEEEEEEccCCCc------cHHHHHHHhccEEEEecCCCCHH
Q ss_pred hhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhh
Q 047890 571 PQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 571 ~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrl 615 (1134)
..... +..+....+... ....--+|||||+|++
T Consensus 83 ~~~~~-----------~~~~~~~a~~~~-~~G~~vll~iDei~r~ 115 (249)
T cd01128 83 RHVQV-----------AEMVLEKAKRLV-EHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHH-----------HHHHHHHHHHHH-HCCCCEEEEEECHHHh
No 496
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=85.47 E-value=4.5 Score=48.14 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ 572 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~ 572 (1134)
.|..++|.++.|+|||..+...+-..... .....+||+-..+-...+.+..+.+.. .+++...+......
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n------hFDv~~~VvLIgER~~EVtdiqrsIlg----~vv~st~d~~~~~~ 237 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN------HPEVHLIVLLIDERPEEVTDMQRSVKG----EVVASTFDEPAERH 237 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh------cCCeEEEEEEeCCchhHHHHHHHHhcC----cEEEECCCCCHHHH
Q ss_pred HHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 573 l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
... +..++...+... ....--+|+|||+|++.
T Consensus 238 ~~~-----------a~~~ie~Ae~~~-e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 238 VQV-----------AEMVIEKAKRLV-EHGKDVVILLDSITRLA 269 (416)
T ss_pred HHH-----------HHHHHHHHHHHH-HcCCCEEEEEEChHHHH
No 497
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=85.22 E-value=0.45 Score=53.98 Aligned_cols=78 Identities=37% Similarity=0.409 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047890 960 DRYNNMDGRGRGRGRGRFDNRRDIADRSSRGRSRSRSPDRVRTWGYSSRSRSRSRSSRSSSSSWSRSRSWSRGHSRSPSP 1039 (1134)
Q Consensus 960 dr~r~~~~r~r~r~r~r~~~rr~r~~r~srsrsRSrSrsRsrsr~~~srsrsrsR~~rsrsrSrsrsrSrsrsrsrsrsr 1039 (1134)
.+...++.+.+...++++.... ...+++.+.| |++++++.++..++..++....++++ ++++++++++.+ |++++
T Consensus 242 ~~~~~R~~~~re~~~~R~~~~~--~~~r~rd~~r-r~rd~~r~~~~~~r~~~r~~r~rsr~-~r~~~~~~~r~~-R~r~r 316 (319)
T KOG0796|consen 242 FRSKRREERERESDRSRSGSRE--ERHRSRDRDR-RSRDRSRERDRHSRREDRYDRHRSRS-SRSRRRSRSRHR-RDRDR 316 (319)
T ss_pred ccchhhhhhhcccccccccccc--hhhccccccc-cCCccccccccccccchhhhhccchh-hhhhhhcccccc-ccccc
Q ss_pred CCC
Q 047890 1040 SHN 1042 (1134)
Q Consensus 1040 srs 1042 (1134)
.++
T Consensus 317 ~~~ 319 (319)
T KOG0796|consen 317 RRS 319 (319)
T ss_pred ccC
No 498
>PRK06321 replicative DNA helicase; Provisional
Probab=85.13 E-value=5.6 Score=48.70 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH--
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR-- 574 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~-- 574 (1134)
+||.|.+|.|||..++-.+...... .+..|+|++.- .=..|+...+ ++...++...-+..+.-......
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~------~g~~v~~fSLE-Ms~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~ 299 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQ------NRLPVGIFSLE-MTVDQLIHRI--ICSRSEVESKKISVGDLSGRDFQRI 299 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHH--HHhhcCCCHHHhhcCCCCHHHHHHH
Q ss_pred ----hhcCCCcEEEe-----ChHHHHHHHHhcccCCCCeEEEEEcchhhhhc-------cCchHHHHHHHHhCC-----C
Q 047890 575 ----ELDQGADIVVA-----TPGRLNDILEMKKIDFGQVSLLVLDEADRMLD-------MGFEPQIRKIVNEMP-----P 633 (1134)
Q Consensus 575 ----~l~~~~dIIVa-----TPerL~~lL~~~~l~l~~l~lVVIDEAHrll~-------~gf~~~i~~IL~~l~-----~ 633 (1134)
.......+.|- |...|...+..-... ..+++||||=.+.|.. ......+..|...++ -
T Consensus 300 ~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~-~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel 378 (472)
T PRK06321 300 VSVVNEMQEHTLLIDDQPGLKITDLRARARRMKES-YDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLAREL 378 (472)
T ss_pred HHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CceEEEEe
Q 047890 634 HRQTLMYT 641 (1134)
Q Consensus 634 ~~qiLllS 641 (1134)
++.+|++|
T Consensus 379 ~vpVi~ls 386 (472)
T PRK06321 379 NIPILCLS 386 (472)
T ss_pred CCcEEEEe
No 499
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=85.08 E-value=3.1 Score=47.91 Aligned_cols=66 Identities=27% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH
Q 047890 469 VASMHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL 541 (1134)
Q Consensus 469 l~~l~~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL 541 (1134)
++.+...|. +++.+.+.|..++.. .++|++++||||||. ++..|...........++++|=.+.||
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-----ll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-----LANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-----HHHHHHHHhhccCCCceEEEECCchhh
No 500
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=85.06 E-value=2.3 Score=44.91 Aligned_cols=115 Identities=20% Similarity=0.130 Sum_probs=0.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcC---CCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCC
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN---NPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPK 569 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~---~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~ 569 (1134)
.+.-+++.+++|+|||..++-.++..+..... ......+||+|..-.. ..++.+.+..+.... ....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~---------~~~~ 100 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY---------DDDA 100 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS----------HHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc---------CCcc
Q ss_pred chhHHhhcCCCcEEEeCh-------HHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 570 GPQLRELDQGADIVVATP-------GRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 570 ~~~l~~l~~~~dIIVaTP-------erL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
......+...-.+.+.++ ..++..+........++++||||=+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~ 155 (193)
T PF13481_consen 101 NLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHD 155 (193)
T ss_dssp HHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--
T ss_pred ceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhc
Done!