Query 047890
Match_columns 1134
No_of_seqs 704 out of 4653
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:50:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 8.9E-55 3E-59 514.0 44.0 373 458-834 57-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 6.8E-52 2.3E-56 482.3 43.5 377 459-837 17-412 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.2E-50 4.3E-55 471.6 37.0 366 457-829 37-404 (410)
4 3eiq_A Eukaryotic initiation f 100.0 3.1E-50 1.1E-54 467.4 32.5 374 454-834 37-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 3.9E-49 1.3E-53 457.0 38.7 367 457-831 21-388 (400)
6 1xti_A Probable ATP-dependent 100.0 3.7E-48 1.3E-52 446.5 38.6 366 458-829 9-379 (391)
7 1hv8_A Putative ATP-dependent 100.0 1.1E-47 3.7E-52 437.2 38.0 355 458-826 7-363 (367)
8 3sqw_A ATP-dependent RNA helic 100.0 1.8E-47 6.1E-52 467.3 38.6 357 464-820 28-410 (579)
9 3i5x_A ATP-dependent RNA helic 100.0 3.4E-47 1.2E-51 462.2 37.4 357 464-820 79-461 (563)
10 3fht_A ATP-dependent RNA helic 100.0 1.2E-46 4.2E-51 436.4 40.3 362 457-828 25-400 (412)
11 3pey_A ATP-dependent RNA helic 100.0 1.2E-46 4.1E-51 433.0 39.9 345 456-811 4-359 (395)
12 1fuu_A Yeast initiation factor 100.0 1.5E-48 5E-53 449.8 20.9 367 458-832 22-390 (394)
13 2z0m_A 337AA long hypothetical 100.0 2.9E-46 9.9E-51 421.1 36.9 334 465-821 2-335 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 2.7E-46 9.2E-51 445.8 19.9 361 457-827 92-466 (479)
15 2v1x_A ATP-dependent DNA helic 100.0 2.7E-43 9.1E-48 430.9 34.7 340 461-817 25-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 2.4E-44 8E-49 433.4 20.6 357 461-828 123-491 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 2.8E-42 9.6E-47 416.8 33.9 339 458-818 3-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 6.1E-43 2.1E-47 408.8 24.8 317 475-821 18-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 2.8E-42 9.5E-47 415.8 29.7 332 476-811 4-511 (556)
20 3tbk_A RIG-I helicase domain; 100.0 2E-41 6.8E-46 407.4 28.3 331 479-813 4-512 (555)
21 2ykg_A Probable ATP-dependent 100.0 1.3E-40 4.5E-45 414.1 30.6 339 470-812 4-520 (696)
22 1wp9_A ATP-dependent RNA helic 100.0 2.3E-39 8E-44 379.6 35.0 323 479-810 9-477 (494)
23 4a2q_A RIG-I, retinoic acid in 100.0 4.4E-40 1.5E-44 416.4 30.0 333 474-810 243-751 (797)
24 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-38 4.9E-43 397.8 34.7 338 459-810 10-410 (715)
25 2zj8_A DNA helicase, putative 100.0 3.8E-39 1.3E-43 403.4 28.7 334 459-809 3-388 (720)
26 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-39 7.5E-44 404.5 25.9 333 464-809 10-389 (702)
27 3l9o_A ATP-dependent RNA helic 100.0 4.4E-39 1.5E-43 417.1 29.6 315 472-808 177-597 (1108)
28 1gm5_A RECG; helicase, replica 100.0 3.8E-39 1.3E-43 403.3 24.7 344 468-837 357-725 (780)
29 4gl2_A Interferon-induced heli 100.0 3.5E-39 1.2E-43 401.5 23.7 324 479-807 7-517 (699)
30 4a2w_A RIG-I, retinoic acid in 100.0 1E-38 3.6E-43 409.5 26.5 332 475-810 244-751 (936)
31 1tf5_A Preprotein translocase 100.0 2.5E-38 8.5E-43 390.2 27.6 323 474-810 79-547 (844)
32 2xgj_A ATP-dependent RNA helic 100.0 2.3E-37 7.9E-42 397.9 37.6 311 475-808 83-499 (1010)
33 4ddu_A Reverse gyrase; topoiso 100.0 2E-38 6.9E-43 410.8 27.9 317 475-821 75-503 (1104)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 2.7E-38 9.3E-43 409.3 21.1 320 474-822 53-468 (1054)
35 2eyq_A TRCF, transcription-rep 100.0 2E-36 6.8E-41 394.3 35.8 346 467-837 591-956 (1151)
36 2oca_A DAR protein, ATP-depend 100.0 4.4E-36 1.5E-40 360.3 29.8 313 477-806 111-453 (510)
37 4a4z_A Antiviral helicase SKI2 100.0 9.3E-36 3.2E-40 382.9 32.5 311 475-805 36-489 (997)
38 2fsf_A Preprotein translocase 100.0 3.1E-36 1.1E-40 370.5 25.3 321 476-810 72-585 (853)
39 2fwr_A DNA repair protein RAD2 100.0 1E-36 3.5E-41 362.4 19.6 291 479-805 93-449 (472)
40 1nkt_A Preprotein translocase 100.0 1.3E-35 4.5E-40 365.2 28.3 323 475-811 108-620 (922)
41 4f92_B U5 small nuclear ribonu 100.0 1.8E-34 6.2E-39 386.1 36.3 341 464-816 911-1316(1724)
42 4f92_B U5 small nuclear ribonu 100.0 3.6E-34 1.2E-38 383.2 30.3 332 476-815 76-480 (1724)
43 2whx_A Serine protease/ntpase/ 100.0 3.2E-35 1.1E-39 361.0 15.8 303 477-824 169-497 (618)
44 1z3i_X Similar to RAD54-like; 100.0 7.6E-33 2.6E-37 342.3 36.2 385 419-821 5-539 (644)
45 2jlq_A Serine protease subunit 100.0 9.5E-35 3.3E-39 344.9 16.9 286 476-807 1-310 (451)
46 1z63_A Helicase of the SNF2/RA 100.0 1.7E-33 5.8E-38 337.0 26.6 326 479-824 37-467 (500)
47 1yks_A Genome polyprotein [con 100.0 1.1E-35 3.6E-40 352.1 6.4 285 490-827 4-321 (440)
48 2wv9_A Flavivirin protease NS2 100.0 1.5E-35 5E-40 366.5 6.6 305 469-818 200-546 (673)
49 3h1t_A Type I site-specific re 100.0 1.7E-33 5.9E-38 344.4 24.2 313 478-806 177-556 (590)
50 3dmq_A RNA polymerase-associat 100.0 6.9E-33 2.4E-37 356.3 25.7 335 478-822 152-627 (968)
51 3o8b_A HCV NS3 protease/helica 100.0 4.1E-34 1.4E-38 349.9 12.1 278 479-812 217-518 (666)
52 2xau_A PRE-mRNA-splicing facto 100.0 8E-33 2.7E-37 347.6 20.7 330 459-810 74-445 (773)
53 2z83_A Helicase/nucleoside tri 100.0 4.6E-33 1.6E-37 331.1 12.7 272 488-808 15-313 (459)
54 2v6i_A RNA helicase; membrane, 100.0 2.2E-32 7.6E-37 322.8 17.5 270 493-806 1-288 (431)
55 3fe2_A Probable ATP-dependent 100.0 3.3E-31 1.1E-35 288.1 22.5 209 458-666 30-239 (242)
56 3mwy_W Chromo domain-containin 100.0 4.3E-30 1.5E-34 325.0 30.1 334 479-824 236-698 (800)
57 3iuy_A Probable ATP-dependent 100.0 3E-30 1E-34 277.4 22.9 201 462-663 25-227 (228)
58 3ber_A Probable ATP-dependent 100.0 8.1E-30 2.8E-34 279.1 25.4 208 453-664 39-247 (249)
59 1vec_A ATP-dependent RNA helic 100.0 8.6E-30 2.9E-34 268.7 23.5 201 458-662 4-205 (206)
60 2pl3_A Probable ATP-dependent 100.0 1.4E-29 4.8E-34 273.5 25.5 209 456-665 24-233 (236)
61 1wrb_A DJVLGB; RNA helicase, D 100.0 7.2E-30 2.5E-34 278.9 22.5 210 458-667 24-242 (253)
62 1q0u_A Bstdead; DEAD protein, 100.0 5.2E-30 1.8E-34 274.0 20.4 203 459-665 6-212 (219)
63 3bor_A Human initiation factor 100.0 5E-30 1.7E-34 278.1 20.5 205 456-664 29-234 (237)
64 3ly5_A ATP-dependent RNA helic 100.0 8.8E-30 3E-34 280.9 22.5 197 464-660 61-258 (262)
65 3rc3_A ATP-dependent RNA helic 100.0 5.4E-30 1.9E-34 316.3 21.8 273 489-806 150-443 (677)
66 2gxq_A Heat resistant RNA depe 100.0 3E-29 1E-33 264.5 23.4 203 459-664 3-205 (207)
67 2oxc_A Probable ATP-dependent 100.0 2.6E-29 8.9E-34 271.1 23.1 203 457-664 24-228 (230)
68 1qde_A EIF4A, translation init 100.0 4.2E-29 1.4E-33 267.2 22.8 203 458-665 15-217 (224)
69 1t6n_A Probable ATP-dependent 100.0 9.4E-29 3.2E-33 264.0 22.1 202 458-663 15-219 (220)
70 3fmo_B ATP-dependent RNA helic 100.0 6.4E-29 2.2E-33 279.7 21.4 203 456-665 91-298 (300)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.1E-27 3.6E-32 307.2 28.9 313 478-806 270-707 (1038)
72 3dkp_A Probable ATP-dependent 100.0 2E-28 7E-33 265.9 18.9 202 462-666 34-242 (245)
73 3jux_A Protein translocase sub 100.0 1.2E-26 4.1E-31 280.5 32.7 314 479-810 75-589 (822)
74 1c4o_A DNA nucleotide excision 99.9 6.3E-24 2.1E-28 263.1 27.8 126 690-816 427-558 (664)
75 2ipc_A Preprotein translocase 99.9 2.7E-23 9.1E-28 255.3 30.6 130 475-616 76-215 (997)
76 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.1E-23 3.9E-28 220.5 17.9 166 672-837 16-182 (185)
77 2d7d_A Uvrabc system protein B 99.9 2.9E-23 9.9E-28 257.1 24.5 124 690-814 433-562 (661)
78 2p6n_A ATP-dependent RNA helic 99.9 1.7E-23 5.8E-28 220.5 16.7 178 654-835 10-189 (191)
79 2hjv_A ATP-dependent RNA helic 99.9 4.4E-22 1.5E-26 203.8 17.8 150 673-823 7-157 (163)
80 1t5i_A C_terminal domain of A 99.9 4.4E-22 1.5E-26 205.9 15.0 157 674-831 4-162 (172)
81 1fuk_A Eukaryotic initiation f 99.9 3.2E-22 1.1E-26 205.1 13.4 154 675-829 3-158 (165)
82 3b6e_A Interferon-induced heli 99.9 5.1E-22 1.7E-26 209.7 13.9 167 475-643 29-216 (216)
83 2rb4_A ATP-dependent RNA helic 99.9 1.6E-21 5.4E-26 201.8 16.5 150 674-824 6-163 (175)
84 2vl7_A XPD; helicase, unknown 99.9 1.4E-20 4.8E-25 228.1 23.3 127 475-616 4-188 (540)
85 3eaq_A Heat resistant RNA depe 99.8 7.4E-21 2.5E-25 203.4 16.6 146 677-823 7-153 (212)
86 3i32_A Heat resistant RNA depe 99.8 3.2E-20 1.1E-24 208.8 16.6 146 676-822 3-149 (300)
87 1rif_A DAR protein, DNA helica 99.8 2.8E-20 9.5E-25 206.7 15.6 255 361-649 2-267 (282)
88 3crv_A XPD/RAD3 related DNA he 99.8 5.3E-18 1.8E-22 206.1 32.2 129 479-617 3-187 (551)
89 2yjt_D ATP-dependent RNA helic 99.7 1.4E-21 4.7E-26 201.5 0.0 147 676-823 4-152 (170)
90 3llm_A ATP-dependent RNA helic 99.8 2E-18 6.9E-23 186.9 15.2 168 476-656 58-228 (235)
91 4a15_A XPD helicase, ATP-depen 99.7 8.4E-16 2.9E-20 189.0 28.6 81 479-565 3-87 (620)
92 2fz4_A DNA repair protein RAD2 99.7 5.5E-17 1.9E-21 176.3 14.5 138 478-646 92-230 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 8.2E-17 2.8E-21 178.6 12.6 139 683-821 92-235 (271)
94 2e45_A Fe65 protein, amyloid b 98.6 1.2E-08 4E-13 83.6 3.1 38 16-55 14-51 (55)
95 1w36_D RECD, exodeoxyribonucle 98.6 5.2E-08 1.8E-12 119.7 9.7 146 481-643 151-298 (608)
96 2jv4_A Peptidyl-prolyl CIS/tra 98.5 6.1E-08 2.1E-12 80.7 3.9 36 19-54 5-40 (54)
97 4b3f_X DNA-binding protein smu 98.5 8.6E-07 3E-11 109.6 14.7 68 479-553 189-257 (646)
98 2ysh_A GAS-7, growth-arrest-sp 98.4 1E-07 3.6E-12 74.5 3.7 37 17-54 3-39 (40)
99 2ho2_A Fe65 protein, amyloid b 98.4 1.3E-07 4.5E-12 72.9 2.7 34 20-55 2-35 (38)
100 2jx8_A Hpcif1, phosphorylated 98.3 8.4E-08 2.9E-12 79.2 0.4 38 18-55 7-44 (52)
101 3upu_A ATP-dependent DNA helic 98.3 1.8E-05 6.2E-10 93.7 19.3 71 473-549 19-94 (459)
102 2dmv_A Itchy homolog E3 ubiqui 98.3 4.9E-07 1.7E-11 71.8 3.9 38 17-55 3-40 (43)
103 2ysc_A Amyloid beta A4 precurs 98.2 5.4E-07 1.9E-11 69.9 2.6 33 19-53 6-38 (39)
104 3pgw_S U1-70K; protein-RNA com 98.1 1.6E-05 5.3E-10 93.9 14.5 21 798-820 144-164 (437)
105 1wr3_A Ubiquitin-protein ligas 98.1 1.5E-06 5E-11 66.3 2.9 33 20-53 3-35 (36)
106 1ymz_A CC45; artificial protei 98.1 1.7E-06 5.8E-11 68.7 3.1 35 20-55 7-41 (43)
107 1wr7_A NEDD4-2; all-beta, liga 98.1 1.8E-06 6E-11 67.9 2.9 36 17-53 4-39 (41)
108 1wr4_A Ubiquitin-protein ligas 98.0 2.2E-06 7.5E-11 65.3 2.9 34 19-53 2-35 (36)
109 1e0m_A Wwprototype; SH3 protot 98.0 2.4E-06 8.1E-11 65.5 2.7 34 20-54 2-35 (37)
110 2kyk_A E3 ubiquitin-protein li 98.0 3.4E-06 1.2E-10 65.5 3.5 35 19-54 4-38 (39)
111 2gk6_A Regulator of nonsense t 98.0 3.9E-05 1.3E-09 94.5 14.2 70 477-552 178-247 (624)
112 3e1s_A Exodeoxyribonuclease V, 98.0 1.8E-05 6.3E-10 96.4 11.0 127 479-643 189-315 (574)
113 1e0n_A Hypothetical protein; Y 98.0 2.2E-06 7.5E-11 61.0 1.6 27 24-52 1-27 (27)
114 3pgw_S U1-70K; protein-RNA com 97.9 2.3E-05 7.8E-10 92.4 11.1 7 784-790 118-124 (437)
115 2ez5_W Dnedd4, E3 ubiquitin-pr 97.9 6.1E-06 2.1E-10 66.4 4.1 44 12-56 1-44 (46)
116 2zaj_A Membrane-associated gua 97.9 7.4E-06 2.5E-10 66.7 3.9 38 16-54 8-45 (49)
117 2xzl_A ATP-dependent helicase 97.9 6.1E-05 2.1E-09 95.2 14.1 71 477-553 358-428 (802)
118 3hgt_A HDA1 complex subunit 3; 97.8 8.4E-05 2.9E-09 83.7 12.8 119 684-807 106-236 (328)
119 2law_A Yorkie homolog; YAP, SM 97.8 6.4E-06 2.2E-10 63.6 2.6 36 17-53 2-37 (38)
120 3lfu_A DNA helicase II; SF1 he 97.8 0.00045 1.5E-08 84.8 20.3 71 478-553 8-78 (647)
121 2ysf_A E3 ubiquitin-protein li 97.8 9.4E-06 3.2E-10 63.4 3.3 37 16-53 2-38 (40)
122 2ysg_A Syntaxin-binding protei 97.8 1E-05 3.6E-10 63.1 3.5 36 17-53 3-38 (40)
123 1i5h_W Rnedd4, ubiquitin ligas 97.8 1E-05 3.5E-10 66.3 3.4 39 18-57 8-46 (50)
124 2kpz_A E3 ubiquitin-protein li 97.8 8.5E-06 2.9E-10 66.5 2.9 40 17-57 8-47 (49)
125 1ywi_A Formin-binding protein 97.8 5.8E-06 2E-10 64.9 1.8 32 21-53 9-40 (41)
126 2yse_A Membrane-associated gua 97.8 1.2E-05 4.2E-10 68.1 3.3 43 11-54 3-45 (60)
127 2wjy_A Regulator of nonsense t 97.8 0.00011 3.8E-09 92.7 13.4 71 477-553 354-424 (800)
128 2l4j_A YES-associated protein 97.7 2.1E-05 7.2E-10 63.3 4.2 38 16-54 6-43 (46)
129 2djy_A SMAD ubiquitination reg 97.7 1.9E-05 6.6E-10 62.2 3.5 37 18-55 4-40 (42)
130 2ysi_A Transcription elongatio 97.7 1.7E-05 5.8E-10 61.9 3.1 32 21-53 7-38 (40)
131 2ysb_A Salvador homolog 1 prot 97.7 2.6E-05 8.8E-10 63.6 4.3 41 16-57 6-46 (49)
132 1e0l_A Formin binding protein; 97.7 2.2E-05 7.6E-10 60.2 3.0 32 22-54 4-35 (37)
133 2dwv_A Salvador homolog 1 prot 97.6 2.8E-05 9.7E-10 63.3 2.9 36 18-54 10-45 (49)
134 2jmf_A E3 ubiquitin-protein li 97.5 5.3E-05 1.8E-09 62.8 3.8 39 17-56 14-52 (53)
135 2l5f_A PRE-mRNA-processing fac 97.5 4.5E-05 1.5E-09 70.6 2.8 39 18-57 8-46 (92)
136 3tc5_A Peptidyl-prolyl CIS-tra 97.4 3.7E-05 1.3E-09 78.9 1.8 40 17-56 5-44 (166)
137 2kxq_A E3 ubiquitin-protein li 97.4 0.00013 4.6E-09 67.1 4.6 40 15-55 3-42 (90)
138 2dk1_A WW domain-binding prote 97.3 0.00016 5.5E-09 59.1 3.7 32 25-57 8-39 (50)
139 2ysd_A Membrane-associated gua 97.2 0.00024 8.1E-09 59.8 4.5 38 19-57 12-49 (57)
140 2o0j_A Terminase, DNA packagin 97.1 0.0013 4.4E-08 76.2 10.4 71 479-554 163-233 (385)
141 1jmq_A YAP65, 65 kDa YES-assoc 97.1 0.00037 1.3E-08 56.0 4.0 39 16-55 3-41 (46)
142 1wmv_A WWOX, WW domain contain 97.1 0.00047 1.6E-08 57.3 4.7 39 18-57 8-46 (54)
143 2jxw_A WW domain-binding prote 97.1 0.00018 6.1E-09 64.0 2.0 34 19-53 41-74 (75)
144 1tk7_A CG4244-PB; WW domain, n 96.9 0.0005 1.7E-08 63.0 3.9 36 20-56 11-46 (88)
145 2l5f_A PRE-mRNA-processing fac 96.8 0.00035 1.2E-08 64.6 1.6 33 22-55 53-85 (92)
146 3ec2_A DNA replication protein 96.7 0.0035 1.2E-07 63.9 9.0 34 481-514 16-58 (180)
147 3cpe_A Terminase, DNA packagin 96.7 0.0064 2.2E-07 74.3 12.7 73 479-556 163-235 (592)
148 2jxw_A WW domain-binding prote 96.6 0.0013 4.6E-08 58.3 4.2 33 24-57 5-37 (75)
149 2kxq_A E3 ubiquitin-protein li 96.6 0.0011 3.6E-08 61.1 3.6 35 20-55 54-88 (90)
150 1o6w_A PRP40, PRE-mRNA process 96.4 0.00079 2.7E-08 59.7 1.0 33 21-54 40-72 (75)
151 2orw_A Thymidine kinase; TMTK, 96.4 0.0082 2.8E-07 62.2 8.8 38 494-538 3-40 (184)
152 1xx6_A Thymidine kinase; NESG, 96.3 0.0049 1.7E-07 64.5 7.1 38 494-538 8-45 (191)
153 1tk7_A CG4244-PB; WW domain, n 96.3 0.0016 5.5E-08 59.6 2.5 34 19-53 54-87 (88)
154 2j9r_A Thymidine kinase; TK1, 96.1 0.0053 1.8E-07 65.3 5.9 38 495-539 29-66 (214)
155 2dk7_A Transcription elongatio 96.1 0.0019 6.6E-08 56.3 1.9 33 24-57 20-52 (73)
156 1pjr_A PCRA; DNA repair, DNA r 96.0 0.017 5.6E-07 72.4 10.5 110 478-614 10-121 (724)
157 3vkw_A Replicase large subunit 96.0 0.013 4.5E-07 68.8 8.9 107 496-643 163-269 (446)
158 2b8t_A Thymidine kinase; deoxy 95.9 0.011 3.9E-07 63.2 7.2 90 494-615 12-101 (223)
159 1uaa_A REP helicase, protein ( 95.8 0.01 3.5E-07 73.5 7.6 70 479-553 2-71 (673)
160 1yw5_A Peptidyl prolyl CIS/tra 95.7 0.0052 1.8E-07 63.5 3.5 35 20-54 6-40 (177)
161 3te6_A Regulatory protein SIR3 95.6 0.05 1.7E-06 61.3 11.6 41 602-645 131-174 (318)
162 1l8q_A Chromosomal replication 95.6 0.045 1.5E-06 61.1 11.1 20 495-514 38-57 (324)
163 3e2i_A Thymidine kinase; Zn-bi 95.6 0.017 5.8E-07 61.5 7.0 39 494-539 28-66 (219)
164 3l4h_A E3 ubiquitin-protein li 95.5 0.0093 3.2E-07 56.3 4.2 41 16-57 67-107 (109)
165 2zpa_A Uncharacterized protein 95.5 0.016 5.4E-07 71.3 7.2 112 479-644 175-288 (671)
166 2v1u_A Cell division control p 95.5 0.09 3.1E-06 59.3 13.1 21 494-514 44-64 (387)
167 3kl4_A SRP54, signal recogniti 95.4 0.043 1.5E-06 64.3 10.5 130 496-655 99-234 (433)
168 2w58_A DNAI, primosome compone 95.4 0.042 1.5E-06 56.7 9.2 19 495-513 55-73 (202)
169 2qby_B CDC6 homolog 3, cell di 95.4 0.09 3.1E-06 59.6 12.7 36 606-642 136-172 (384)
170 2chg_A Replication factor C sm 95.4 0.12 4.2E-06 52.8 12.7 40 602-642 101-140 (226)
171 2p65_A Hypothetical protein PF 95.3 0.066 2.3E-06 53.5 10.1 20 494-513 43-62 (187)
172 1jbk_A CLPB protein; beta barr 95.1 0.25 8.4E-06 49.2 13.8 19 495-513 44-62 (195)
173 1d2n_A N-ethylmaleimide-sensit 95.1 0.15 5E-06 55.4 12.8 19 495-513 65-83 (272)
174 2orv_A Thymidine kinase; TP4A 95.0 0.032 1.1E-06 60.0 7.0 39 494-539 19-57 (234)
175 1o6w_A PRP40, PRE-mRNA process 95.0 0.0085 2.9E-07 53.0 2.0 30 25-55 3-32 (75)
176 2kjq_A DNAA-related protein; s 94.8 0.011 3.7E-07 59.1 2.6 20 493-512 35-54 (149)
177 1a5t_A Delta prime, HOLB; zinc 94.8 0.079 2.7E-06 59.7 9.9 36 480-515 3-45 (334)
178 1g5t_A COB(I)alamin adenosyltr 94.7 0.15 5.1E-06 53.4 10.7 141 495-653 29-172 (196)
179 1fnn_A CDC6P, cell division co 94.6 0.082 2.8E-06 59.8 9.4 17 496-512 46-62 (389)
180 3syl_A Protein CBBX; photosynt 94.4 0.098 3.4E-06 57.6 9.2 19 495-513 68-86 (309)
181 3u4q_A ATP-dependent helicase/ 94.4 0.041 1.4E-06 72.8 7.1 124 479-613 10-137 (1232)
182 3bos_A Putative DNA replicatio 94.3 0.026 9E-07 59.1 4.3 20 494-513 52-71 (242)
183 1w4r_A Thymidine kinase; type 94.1 0.077 2.6E-06 55.6 7.1 38 494-538 20-57 (195)
184 2qby_A CDC6 homolog 1, cell di 94.0 0.12 4.2E-06 58.0 9.3 20 494-513 45-64 (386)
185 3dm5_A SRP54, signal recogniti 94.0 0.12 4.1E-06 60.7 9.2 130 496-655 102-235 (443)
186 2z4s_A Chromosomal replication 93.9 0.18 6.2E-06 59.2 10.8 22 494-515 130-151 (440)
187 1gm5_A RECG; helicase, replica 93.9 0.11 3.7E-06 65.4 9.3 84 692-775 407-496 (780)
188 2qgz_A Helicase loader, putati 93.9 0.041 1.4E-06 61.6 4.8 26 494-519 152-177 (308)
189 3u61_B DNA polymerase accessor 93.4 0.087 3E-06 58.6 6.5 40 602-641 104-143 (324)
190 2dr3_A UPF0273 protein PH0284; 93.1 0.31 1E-05 51.4 9.8 52 493-552 22-73 (247)
191 2w0m_A SSO2452; RECA, SSPF, un 92.8 0.52 1.8E-05 48.9 11.1 26 493-518 22-47 (235)
192 3oiy_A Reverse gyrase helicase 92.7 0.23 7.9E-06 57.0 8.9 80 695-775 57-145 (414)
193 1sxj_E Activator 1 40 kDa subu 92.6 0.19 6.5E-06 56.4 7.8 42 602-644 133-174 (354)
194 1njg_A DNA polymerase III subu 92.4 0.82 2.8E-05 47.0 11.9 39 602-641 125-163 (250)
195 3h4m_A Proteasome-activating n 92.3 0.45 1.6E-05 51.6 10.1 20 493-512 50-69 (285)
196 3eie_A Vacuolar protein sortin 92.3 0.35 1.2E-05 54.0 9.4 19 495-513 52-70 (322)
197 4a1f_A DNAB helicase, replicat 92.2 0.38 1.3E-05 54.6 9.6 48 494-549 46-93 (338)
198 3n70_A Transport activator; si 92.1 0.47 1.6E-05 46.4 9.1 20 492-511 22-41 (145)
199 2r2a_A Uncharacterized protein 92.0 0.13 4.4E-06 54.0 5.0 18 496-513 7-24 (199)
200 1sxj_D Activator 1 41 kDa subu 91.9 0.41 1.4E-05 53.4 9.4 39 602-641 132-170 (353)
201 1iqp_A RFCS; clamp loader, ext 91.8 0.47 1.6E-05 52.1 9.6 39 602-641 109-147 (327)
202 1w5s_A Origin recognition comp 91.7 0.43 1.5E-05 54.4 9.5 19 495-513 51-71 (412)
203 2r6a_A DNAB helicase, replicat 91.6 0.64 2.2E-05 54.6 11.1 45 487-537 192-240 (454)
204 3pfi_A Holliday junction ATP-d 91.5 0.44 1.5E-05 53.1 9.2 18 495-512 56-73 (338)
205 3co5_A Putative two-component 91.2 0.28 9.5E-06 48.0 6.3 20 491-510 24-43 (143)
206 2q6t_A DNAB replication FORK h 91.2 0.73 2.5E-05 54.0 10.9 45 487-537 189-237 (444)
207 3pvs_A Replication-associated 91.2 0.21 7.3E-06 58.8 6.2 18 495-512 51-68 (447)
208 3vfd_A Spastin; ATPase, microt 91.1 0.73 2.5E-05 52.8 10.6 19 494-512 148-166 (389)
209 2qp9_X Vacuolar protein sortin 90.5 1 3.5E-05 51.1 11.0 19 495-513 85-103 (355)
210 2gno_A DNA polymerase III, gam 90.3 1 3.5E-05 50.2 10.6 40 601-641 80-119 (305)
211 2qz4_A Paraplegin; AAA+, SPG7, 90.2 1.1 3.8E-05 47.6 10.4 19 494-512 39-57 (262)
212 1cr0_A DNA primase/helicase; R 90.2 0.33 1.1E-05 53.3 6.4 39 493-537 34-72 (296)
213 2eyq_A TRCF, transcription-rep 90.2 0.72 2.5E-05 60.6 10.5 82 694-775 644-731 (1151)
214 4ddu_A Reverse gyrase; topoiso 90.0 0.61 2.1E-05 61.0 9.6 82 693-775 112-202 (1104)
215 1sxj_A Activator 1 95 kDa subu 89.9 0.55 1.9E-05 56.2 8.3 41 602-644 147-189 (516)
216 3cf0_A Transitional endoplasmi 89.8 0.92 3.1E-05 50.1 9.6 19 494-512 49-67 (301)
217 4b4t_J 26S protease regulatory 89.6 1.4 4.7E-05 51.1 11.0 20 494-513 182-201 (405)
218 1sxj_B Activator 1 37 kDa subu 89.5 0.77 2.6E-05 50.3 8.7 38 603-641 107-144 (323)
219 1hqc_A RUVB; extended AAA-ATPa 89.5 0.75 2.6E-05 50.7 8.6 18 495-512 39-56 (324)
220 1jr3_A DNA polymerase III subu 89.5 1.3 4.5E-05 49.6 10.7 40 601-641 117-156 (373)
221 1xwi_A SKD1 protein; VPS4B, AA 89.4 1 3.6E-05 50.3 9.8 18 495-512 46-63 (322)
222 2z43_A DNA repair and recombin 89.2 0.5 1.7E-05 52.9 6.9 65 487-552 95-165 (324)
223 3hu3_A Transitional endoplasmi 89.1 0.82 2.8E-05 54.4 9.0 41 604-644 298-348 (489)
224 3uk6_A RUVB-like 2; hexameric 89.0 2 6.7E-05 48.3 11.7 19 495-513 71-89 (368)
225 3d8b_A Fidgetin-like protein 1 88.7 1.6 5.3E-05 49.6 10.6 19 494-512 117-135 (357)
226 2cvh_A DNA repair and recombin 88.7 1.8 6.1E-05 44.6 10.3 34 494-537 20-53 (220)
227 2zts_A Putative uncharacterize 88.5 0.71 2.4E-05 48.6 7.2 53 493-552 29-81 (251)
228 3cmu_A Protein RECA, recombina 88.3 0.56 1.9E-05 64.2 7.5 56 488-553 1415-1476(2050)
229 1sxj_C Activator 1 40 kDa subu 88.3 2 7E-05 48.0 11.2 39 602-641 109-147 (340)
230 3bh0_A DNAB-like replicative h 88.2 0.87 3E-05 50.8 8.0 57 487-551 57-117 (315)
231 2ehv_A Hypothetical protein PH 87.9 0.56 1.9E-05 49.4 5.9 24 492-515 28-51 (251)
232 2bjv_A PSP operon transcriptio 87.8 0.57 2E-05 50.4 6.0 19 493-511 28-46 (265)
233 2zan_A Vacuolar protein sortin 87.7 1.3 4.4E-05 51.9 9.4 19 494-512 167-185 (444)
234 2zr9_A Protein RECA, recombina 87.5 0.31 1.1E-05 55.4 3.9 38 494-538 61-98 (349)
235 2chq_A Replication factor C sm 87.3 0.77 2.6E-05 50.2 6.8 17 496-512 40-56 (319)
236 2fna_A Conserved hypothetical 87.2 14 0.00046 40.6 17.0 52 587-643 124-178 (357)
237 4b4t_M 26S protease regulatory 87.0 2.1 7.1E-05 50.2 10.4 18 495-512 216-233 (434)
238 3b9p_A CG5977-PA, isoform A; A 87.0 2.2 7.4E-05 46.5 10.2 19 494-512 54-72 (297)
239 1nlf_A Regulatory protein REPA 86.9 1.6 5.3E-05 47.5 8.9 26 491-516 27-52 (279)
240 3hws_A ATP-dependent CLP prote 86.9 2 7E-05 48.5 10.2 21 493-513 50-70 (363)
241 1n0w_A DNA repair protein RAD5 86.7 1 3.6E-05 47.1 7.2 24 493-516 23-46 (243)
242 1xp8_A RECA protein, recombina 86.5 0.74 2.5E-05 52.8 6.2 45 487-538 61-111 (366)
243 2hjv_A ATP-dependent RNA helic 86.5 2.6 9E-05 41.8 9.7 74 529-612 35-112 (163)
244 4b4t_L 26S protease subunit RP 86.2 2.1 7E-05 50.2 9.9 19 495-513 216-234 (437)
245 3bgw_A DNAB-like replicative h 86.2 1.1 3.8E-05 52.6 7.7 45 487-538 186-234 (444)
246 2p6n_A ATP-dependent RNA helic 86.2 2.5 8.6E-05 43.5 9.5 73 529-611 54-130 (191)
247 1ls1_A Signal recognition part 86.1 3.7 0.00013 45.3 11.5 22 496-517 100-121 (295)
248 4b4t_I 26S protease regulatory 86.0 2.6 9E-05 49.2 10.5 19 495-513 217-235 (437)
249 1qvr_A CLPB protein; coiled co 86.0 1.3 4.5E-05 56.3 8.8 21 495-515 192-212 (854)
250 2l8b_A Protein TRAI, DNA helic 85.8 1.2 4.2E-05 46.0 6.7 57 481-543 36-94 (189)
251 2qen_A Walker-type ATPase; unk 85.7 4.2 0.00014 44.7 11.8 17 494-510 31-47 (350)
252 2iut_A DNA translocase FTSK; n 85.2 2 7E-05 51.9 9.3 42 494-538 214-255 (574)
253 4b4t_K 26S protease regulatory 84.9 3.6 0.00012 48.0 11.1 19 495-513 207-225 (428)
254 3hjh_A Transcription-repair-co 84.6 2.7 9.1E-05 49.9 9.9 53 493-555 13-65 (483)
255 2px0_A Flagellar biosynthesis 84.4 1 3.5E-05 50.0 5.8 24 495-518 106-129 (296)
256 3t15_A Ribulose bisphosphate c 84.3 0.93 3.2E-05 50.0 5.5 19 495-513 37-55 (293)
257 3hr8_A Protein RECA; alpha and 84.3 1.1 3.6E-05 51.3 6.1 45 487-538 48-98 (356)
258 4b4t_H 26S protease regulatory 83.7 3.6 0.00012 48.4 10.4 20 494-513 243-262 (467)
259 1oyw_A RECQ helicase, ATP-depe 83.7 6.5 0.00022 46.9 12.9 60 700-759 63-123 (523)
260 1t5i_A C_terminal domain of A 83.6 5.2 0.00018 40.1 10.4 74 529-612 31-108 (172)
261 3olm_A E3 ubiquitin-protein li 83.4 0.83 2.9E-05 53.4 4.8 34 20-54 7-40 (429)
262 2ius_A DNA translocase FTSK; n 83.3 3.2 0.00011 49.6 9.8 28 493-520 166-193 (512)
263 1lv7_A FTSH; alpha/beta domain 83.2 3.1 0.00011 44.3 9.0 19 494-512 45-63 (257)
264 2i1q_A DNA repair and recombin 83.0 2 6.8E-05 47.8 7.5 67 486-552 85-166 (322)
265 2rb4_A ATP-dependent RNA helic 82.6 3 0.0001 41.8 8.1 74 528-611 33-110 (175)
266 2j37_W Signal recognition part 82.6 4.8 0.00017 48.0 11.0 35 496-537 103-137 (504)
267 1u94_A RECA protein, recombina 82.5 0.99 3.4E-05 51.5 4.9 45 487-538 50-100 (356)
268 1fuk_A Eukaryotic initiation f 82.5 4.2 0.00014 40.3 9.1 74 529-612 30-107 (165)
269 3io5_A Recombination and repai 82.2 1.5 5.2E-05 49.3 6.1 90 496-616 30-124 (333)
270 1r6b_X CLPA protein; AAA+, N-t 81.9 7.3 0.00025 48.5 13.0 20 494-513 207-226 (758)
271 1vma_A Cell division protein F 81.7 5.3 0.00018 44.4 10.4 21 497-517 107-127 (306)
272 4a74_A DNA repair and recombin 81.7 5 0.00017 41.4 9.7 21 493-513 24-44 (231)
273 2v1x_A ATP-dependent DNA helic 81.5 4.6 0.00016 49.1 10.6 59 701-759 83-144 (591)
274 3k1j_A LON protease, ATP-depen 80.9 5 0.00017 48.8 10.6 24 489-512 55-78 (604)
275 3eaq_A Heat resistant RNA depe 80.9 5.2 0.00018 41.6 9.5 71 529-609 31-105 (212)
276 2ce7_A Cell division protein F 80.6 4.7 0.00016 47.7 9.9 18 495-512 50-67 (476)
277 3pxi_A Negative regulator of g 80.4 6 0.00021 49.4 11.4 18 496-513 523-540 (758)
278 3i5x_A ATP-dependent RNA helic 79.9 8.5 0.00029 45.8 12.1 78 528-612 338-419 (563)
279 3m6a_A ATP-dependent protease 79.9 2.3 7.8E-05 51.2 7.1 19 494-512 108-126 (543)
280 3e70_C DPA, signal recognition 79.5 8.6 0.00029 43.2 11.2 54 603-656 211-265 (328)
281 1q57_A DNA primase/helicase; d 79.4 2.3 7.7E-05 50.6 6.7 49 494-549 242-290 (503)
282 2jgn_A DBX, DDX3, ATP-dependen 78.5 2.7 9.2E-05 42.9 6.2 73 528-610 45-121 (185)
283 1t6n_A Probable ATP-dependent 78.4 5.6 0.00019 41.0 8.7 71 702-775 82-164 (220)
284 1ixz_A ATP-dependent metallopr 78.3 12 0.00043 39.4 11.6 17 495-511 50-66 (254)
285 2i4i_A ATP-dependent RNA helic 78.3 7.5 0.00026 43.9 10.5 72 528-609 275-350 (417)
286 3cf2_A TER ATPase, transitiona 78.2 2.9 0.0001 52.6 7.4 17 495-511 239-255 (806)
287 3cmu_A Protein RECA, recombina 78.1 3.7 0.00013 56.4 8.9 51 493-553 1080-1130(2050)
288 3sqw_A ATP-dependent RNA helic 77.5 11 0.00037 45.3 12.1 79 528-613 287-369 (579)
289 3fe2_A Probable ATP-dependent 77.3 11 0.00036 39.7 10.6 71 701-775 101-182 (242)
290 1v5w_A DMC1, meiotic recombina 77.1 2.5 8.4E-05 47.7 5.8 65 487-552 110-180 (343)
291 2v3c_C SRP54, signal recogniti 76.6 1.7 5.7E-05 50.9 4.4 34 496-536 101-134 (432)
292 2l82_A Designed protein OR32; 76.5 13 0.00046 34.5 9.4 50 705-754 5-55 (162)
293 3cmw_A Protein RECA, recombina 75.6 2.4 8.2E-05 57.4 5.9 90 495-617 1432-1523(1706)
294 1j8m_F SRP54, signal recogniti 75.6 9.1 0.00031 42.3 9.8 22 497-518 101-122 (297)
295 3ber_A Probable ATP-dependent 75.3 7.1 0.00024 41.6 8.6 70 702-775 111-192 (249)
296 2d7d_A Uvrabc system protein B 74.2 25 0.00086 43.2 14.2 78 528-615 444-525 (661)
297 3u4q_B ATP-dependent helicase/ 74.1 4.8 0.00016 52.9 8.2 89 497-614 4-92 (1166)
298 3cf2_A TER ATPase, transitiona 74.0 4 0.00014 51.4 7.1 18 495-512 512-529 (806)
299 2pl3_A Probable ATP-dependent 74.0 8.4 0.00029 40.2 8.7 70 701-775 96-177 (236)
300 1pzn_A RAD51, DNA repair and r 73.8 5.9 0.0002 44.8 7.9 30 487-516 119-153 (349)
301 3lda_A DNA repair protein RAD5 73.6 3.2 0.00011 48.1 5.6 51 487-538 166-221 (400)
302 3cmw_A Protein RECA, recombina 73.3 4 0.00014 55.3 7.2 38 494-538 34-71 (1706)
303 2ffh_A Protein (FFH); SRP54, s 73.0 14 0.00048 43.0 11.0 21 497-517 101-121 (425)
304 1yks_A Genome polyprotein [con 72.9 4.7 0.00016 47.0 6.9 68 529-608 177-245 (440)
305 1c4o_A DNA nucleotide excision 72.4 47 0.0016 40.8 16.0 77 528-614 438-518 (664)
306 2xxa_A Signal recognition part 72.2 14 0.00049 43.0 10.8 35 496-536 102-136 (433)
307 1wrb_A DJVLGB; RNA helicase, D 71.9 28 0.00095 36.6 12.3 70 702-775 100-180 (253)
308 1ub1_A MECP2, attachment regio 71.7 2.2 7.6E-05 41.5 3.1 37 7-43 15-66 (133)
309 3bor_A Human initiation factor 71.3 6.8 0.00023 41.2 7.2 72 701-775 97-179 (237)
310 3i32_A Heat resistant RNA depe 71.1 18 0.00061 40.0 10.8 73 529-611 28-104 (300)
311 2dhr_A FTSH; AAA+ protein, hex 71.0 12 0.00042 44.5 10.0 18 495-512 65-82 (499)
312 2gxq_A Heat resistant RNA depe 70.9 12 0.00042 37.8 8.9 71 701-775 71-150 (207)
313 3fht_A ATP-dependent RNA helic 70.9 9.6 0.00033 42.8 8.8 73 529-611 266-342 (412)
314 2yhs_A FTSY, cell division pro 70.8 8.7 0.0003 45.7 8.5 18 496-513 295-312 (503)
315 1gku_B Reverse gyrase, TOP-RG; 70.2 6.6 0.00023 51.1 8.1 75 699-775 96-181 (1054)
316 3p32_A Probable GTPase RV1496/ 70.0 18 0.00061 40.7 10.7 20 496-515 81-100 (355)
317 1wp9_A ATP-dependent RNA helic 69.4 19 0.00066 40.8 11.1 76 528-613 360-447 (494)
318 1ypw_A Transitional endoplasmi 69.3 8.7 0.0003 48.4 8.7 18 494-511 238-255 (806)
319 3ly5_A ATP-dependent RNA helic 68.9 15 0.00051 39.3 9.4 71 701-775 125-207 (262)
320 3pey_A ATP-dependent RNA helic 68.8 31 0.0011 38.2 12.4 77 528-614 242-322 (395)
321 3iuy_A Probable ATP-dependent 68.4 8.8 0.0003 39.8 7.2 71 701-775 93-173 (228)
322 2oxc_A Probable ATP-dependent 68.2 5.9 0.0002 41.4 5.8 69 702-775 92-172 (230)
323 1e9r_A Conjugal transfer prote 68.1 5.3 0.00018 46.2 6.0 44 493-543 52-95 (437)
324 1xti_A Probable ATP-dependent 68.0 8.2 0.00028 43.1 7.4 76 528-613 249-328 (391)
325 1hv8_A Putative ATP-dependent 67.9 9.6 0.00033 41.9 7.8 75 528-612 237-315 (367)
326 2db3_A ATP-dependent RNA helic 67.4 13 0.00044 42.9 9.1 70 531-610 302-375 (434)
327 1s2m_A Putative ATP-dependent 66.7 38 0.0013 37.8 12.6 74 528-611 257-334 (400)
328 2pk2_A Cyclin-T1, protein TAT; 66.0 4 0.00014 46.5 4.2 24 812-835 233-256 (358)
329 2pk2_A Cyclin-T1, protein TAT; 65.8 1.3 4.3E-05 50.7 0.0 17 810-826 235-251 (358)
330 1tf7_A KAIC; homohexamer, hexa 65.7 17 0.00057 43.3 9.8 52 492-551 279-330 (525)
331 2j0s_A ATP-dependent RNA helic 65.1 50 0.0017 37.0 13.3 73 529-611 276-352 (410)
332 4dzz_A Plasmid partitioning pr 62.4 9.8 0.00033 38.5 6.0 30 500-536 8-37 (206)
333 1qvr_A CLPB protein; coiled co 60.5 22 0.00074 45.1 9.9 18 496-513 590-607 (854)
334 2yjt_D ATP-dependent RNA helic 64.7 1.8 6.2E-05 43.3 0.0 73 529-611 30-106 (170)
335 1vec_A ATP-dependent RNA helic 60.4 18 0.00061 36.5 7.6 70 702-775 71-152 (206)
336 2wv9_A Flavivirin protease NS2 59.7 11 0.00037 46.6 6.8 68 529-608 410-478 (673)
337 2pju_A Propionate catabolism o 59.7 25 0.00086 37.3 8.7 68 690-760 94-163 (225)
338 4a2p_A RIG-I, retinoic acid in 59.6 13 0.00044 43.7 7.2 70 702-775 55-136 (556)
339 1qde_A EIF4A, translation init 58.4 10 0.00035 39.0 5.4 70 701-775 81-161 (224)
340 1sky_E F1-ATPase, F1-ATP synth 58.2 14 0.00046 43.7 6.9 27 491-517 148-174 (473)
341 2v6i_A RNA helicase; membrane, 57.9 13 0.00046 42.9 6.9 53 529-586 171-224 (431)
342 2xau_A PRE-mRNA-splicing facto 57.8 36 0.0012 42.7 11.1 75 529-609 303-393 (773)
343 3pxg_A Negative regulator of g 57.3 6.7 0.00023 46.1 4.2 21 494-514 201-221 (468)
344 3o8b_A HCV NS3 protease/helica 56.6 15 0.0005 45.3 7.1 67 528-608 395-461 (666)
345 2jlq_A Serine protease subunit 55.9 15 0.00053 42.7 6.9 68 529-608 188-256 (451)
346 3c2i_A Methyl-CPG-binding prot 55.7 5.5 0.00019 36.8 2.4 31 12-44 16-53 (97)
347 3fmo_B ATP-dependent RNA helic 55.6 20 0.00068 39.3 7.4 67 702-775 162-241 (300)
348 4b8c_D Glucose-repressible alc 55.6 2.8 9.5E-05 52.2 0.5 10 604-613 439-448 (727)
349 3mm4_A Histidine kinase homolo 55.0 88 0.003 31.6 11.9 126 493-644 19-161 (206)
350 2z83_A Helicase/nucleoside tri 54.4 16 0.00055 42.7 6.8 68 529-608 190-258 (459)
351 3b6e_A Interferon-induced heli 54.4 14 0.00047 37.4 5.5 54 702-759 82-140 (216)
352 1q0u_A Bstdead; DEAD protein, 54.4 9.6 0.00033 39.3 4.4 70 702-775 72-156 (219)
353 3tbk_A RIG-I helicase domain; 54.2 27 0.00092 40.8 8.7 76 529-610 389-477 (555)
354 1cs1_A CGS, protein (cystathio 54.1 55 0.0019 36.5 11.0 109 488-617 61-180 (386)
355 4a2q_A RIG-I, retinoic acid in 53.6 18 0.00061 45.3 7.4 70 702-775 296-377 (797)
356 4ag6_A VIRB4 ATPase, type IV s 53.5 11 0.00037 43.0 4.9 41 493-540 34-74 (392)
357 2oca_A DAR protein, ATP-depend 53.2 81 0.0028 36.7 12.7 73 531-613 350-426 (510)
358 1d9n_A Methyl-CPG-binding prot 53.2 5.9 0.0002 34.9 2.1 26 18-43 7-39 (75)
359 1w36_B RECB, exodeoxyribonucle 51.6 15 0.00053 48.2 6.6 57 496-552 18-79 (1180)
360 3fkq_A NTRC-like two-domain pr 50.6 30 0.001 39.1 8.1 29 501-536 151-179 (373)
361 3dkp_A Probable ATP-dependent 50.1 7.7 0.00026 40.7 2.8 72 701-775 97-181 (245)
362 3luf_A Two-component system re 50.0 2E+02 0.0068 30.3 14.1 22 530-551 5-26 (259)
363 1fuu_A Yeast initiation factor 49.6 17 0.00059 40.4 5.8 70 701-775 88-168 (394)
364 4f4c_A Multidrug resistance pr 48.9 10 0.00035 50.5 4.3 42 602-643 1234-1275(1321)
365 2whx_A Serine protease/ntpase/ 48.8 22 0.00075 43.4 6.9 68 529-608 355-423 (618)
366 2z0m_A 337AA long hypothetical 48.7 30 0.001 37.4 7.4 69 702-775 56-135 (337)
367 2r8r_A Sensor protein; KDPD, P 48.4 15 0.00052 39.1 4.7 25 496-520 8-32 (228)
368 3le4_A Microprocessor complex 48.2 19 0.00067 31.3 4.4 37 20-57 27-63 (79)
369 1ofh_A ATP-dependent HSL prote 48.0 31 0.0011 37.0 7.4 20 493-512 49-68 (310)
370 3b85_A Phosphate starvation-in 47.7 19 0.00065 37.5 5.3 33 480-512 8-40 (208)
371 3pxi_A Negative regulator of g 47.0 39 0.0013 42.0 8.9 22 494-515 201-222 (758)
372 2r44_A Uncharacterized protein 44.9 13 0.00044 41.1 3.7 25 488-512 40-64 (331)
373 3h1t_A Type I site-specific re 44.4 66 0.0023 38.4 10.2 80 528-613 438-527 (590)
374 2ky8_A Methyl-CPG-binding doma 43.6 8.9 0.00031 33.5 1.7 26 18-43 9-41 (72)
375 3ice_A Transcription terminati 43.6 42 0.0014 38.8 7.6 34 480-513 157-193 (422)
376 3eiq_A Eukaryotic initiation f 43.1 30 0.001 38.8 6.5 71 701-774 107-188 (414)
377 3a8t_A Adenylate isopentenyltr 43.0 12 0.0004 42.4 3.0 19 495-513 41-59 (339)
378 1z5z_A Helicase of the SNF2/RA 42.6 54 0.0019 35.4 8.2 94 503-612 93-192 (271)
379 3jzl_A Putative cystathionine 42.6 19 0.00064 41.5 4.7 10 606-615 197-206 (409)
380 4gl2_A Interferon-induced heli 42.4 21 0.00072 43.6 5.4 75 529-609 400-488 (699)
381 2qxy_A Response regulator; reg 41.6 1.9E+02 0.0064 26.5 11.0 85 529-647 4-88 (142)
382 2ykg_A Probable ATP-dependent 41.1 36 0.0012 41.5 7.2 69 703-775 62-142 (696)
383 3vaa_A Shikimate kinase, SK; s 40.8 17 0.00058 37.0 3.6 22 492-513 23-44 (199)
384 2gza_A Type IV secretion syste 39.9 17 0.00059 41.1 3.8 20 491-510 172-191 (361)
385 2oap_1 GSPE-2, type II secreti 39.8 19 0.00066 42.9 4.3 30 481-510 246-276 (511)
386 3l9o_A ATP-dependent RNA helic 39.6 32 0.0011 45.0 6.7 72 693-775 218-296 (1108)
387 2p6r_A Afuhel308 helicase; pro 39.5 45 0.0015 41.0 7.7 76 693-775 59-144 (702)
388 1byi_A Dethiobiotin synthase; 39.2 28 0.00094 35.7 5.0 33 498-537 6-38 (224)
389 1z6t_A APAF-1, apoptotic prote 39.1 89 0.0031 37.1 10.1 33 481-513 129-166 (591)
390 1p9r_A General secretion pathw 39.0 23 0.00077 41.1 4.6 29 482-510 153-183 (418)
391 2qmh_A HPR kinase/phosphorylas 39.0 13 0.00045 38.9 2.4 18 494-511 34-51 (205)
392 3rc3_A ATP-dependent RNA helic 38.7 44 0.0015 41.2 7.4 73 532-615 323-401 (677)
393 3trf_A Shikimate kinase, SK; a 38.4 19 0.00066 35.7 3.5 21 494-514 5-25 (185)
394 2ck3_D ATP synthase subunit be 38.3 24 0.00083 41.6 4.7 22 492-513 151-172 (482)
395 1pff_A Methionine gamma-lyase; 38.3 1.2E+02 0.0039 32.7 10.1 11 606-616 116-126 (331)
396 1kgd_A CASK, peripheral plasma 38.0 15 0.00052 36.8 2.7 19 493-511 4-22 (180)
397 3nbx_X ATPase RAVA; AAA+ ATPas 37.9 17 0.00058 43.2 3.4 28 484-511 31-58 (500)
398 4f4c_A Multidrug resistance pr 37.4 29 0.00099 46.2 5.9 41 601-641 570-610 (1321)
399 1e5e_A MGL, methionine gamma-l 37.3 77 0.0026 35.8 8.8 79 528-617 100-191 (404)
400 3exa_A TRNA delta(2)-isopenten 37.2 16 0.00056 40.8 2.9 18 496-513 5-22 (322)
401 3b5x_A Lipid A export ATP-bind 37.0 36 0.0012 41.0 6.2 41 602-642 497-537 (582)
402 3foz_A TRNA delta(2)-isopenten 36.7 17 0.00058 40.6 2.9 18 496-513 12-29 (316)
403 3dmn_A Putative DNA helicase; 36.6 3.2E+02 0.011 26.9 12.4 63 702-779 61-124 (174)
404 2ze6_A Isopentenyl transferase 35.9 21 0.00071 38.1 3.5 16 497-512 4-19 (253)
405 1zu4_A FTSY; GTPase, signal re 35.6 31 0.0011 38.4 5.0 22 497-518 108-129 (320)
406 3nwn_A Kinesin-like protein KI 35.6 22 0.00074 40.5 3.7 25 487-511 96-122 (359)
407 1lvg_A Guanylate kinase, GMP k 35.5 21 0.0007 36.5 3.2 19 493-511 3-21 (198)
408 3tau_A Guanylate kinase, GMP k 35.5 20 0.00067 36.9 3.1 19 493-511 7-25 (208)
409 2ck3_A ATP synthase subunit al 35.2 37 0.0012 40.4 5.6 28 492-519 160-187 (510)
410 3bs4_A Uncharacterized protein 35.1 53 0.0018 35.6 6.5 58 488-553 10-72 (260)
411 3zq6_A Putative arsenical pump 34.8 32 0.0011 38.1 4.9 33 497-536 17-49 (324)
412 3cg0_A Response regulator rece 34.6 2.6E+02 0.0088 25.2 12.0 87 528-646 8-94 (140)
413 2fz4_A DNA repair protein RAD2 34.6 69 0.0024 33.6 7.3 44 702-758 133-178 (237)
414 2qm8_A GTPase/ATPase; G protei 34.5 1.9E+02 0.0066 32.0 11.3 18 494-511 55-72 (337)
415 2c9o_A RUVB-like 1; hexameric 34.4 31 0.0011 40.1 4.9 19 495-513 64-82 (456)
416 3dr4_A Putative perosamine syn 34.3 64 0.0022 35.8 7.4 10 606-615 173-182 (391)
417 2va8_A SSO2462, SKI2-type heli 34.3 66 0.0023 39.5 8.1 77 528-610 251-363 (715)
418 3ndn_A O-succinylhomoserine su 34.2 1.1E+02 0.0039 34.8 9.6 76 528-614 119-206 (414)
419 2r62_A Cell division protease 33.6 18 0.00061 38.4 2.5 19 494-512 44-62 (268)
420 2eyu_A Twitching motility prot 33.4 19 0.00064 38.9 2.6 20 492-511 23-42 (261)
421 4a2w_A RIG-I, retinoic acid in 33.2 58 0.002 41.7 7.5 79 528-612 630-721 (936)
422 2oga_A Transaminase; PLP-depen 33.2 38 0.0013 38.0 5.3 11 606-616 180-190 (399)
423 2fwr_A DNA repair protein RAD2 33.2 66 0.0023 37.0 7.4 44 702-758 133-178 (472)
424 2fq6_A Cystathionine beta-lyas 32.8 1.3E+02 0.0043 34.5 9.7 78 528-615 120-210 (415)
425 3iij_A Coilin-interacting nucl 32.7 31 0.0011 34.1 4.0 21 493-513 10-30 (180)
426 2zj8_A DNA helicase, putative 32.7 55 0.0019 40.3 7.0 52 701-759 67-122 (720)
427 1kag_A SKI, shikimate kinase I 32.6 27 0.00092 34.2 3.4 19 494-512 4-22 (173)
428 3mwy_W Chromo domain-containin 32.5 1.3E+02 0.0044 37.6 10.4 76 528-613 571-653 (800)
429 1jr3_D DNA polymerase III, del 32.5 65 0.0022 35.5 7.0 55 588-644 62-117 (343)
430 2q5c_A NTRC family transcripti 32.5 59 0.002 33.4 6.1 68 690-760 82-151 (196)
431 3crm_A TRNA delta(2)-isopenten 32.4 22 0.00074 39.9 2.9 18 496-513 7-24 (323)
432 2pt7_A CAG-ALFA; ATPase, prote 32.2 21 0.00071 39.9 2.8 19 492-510 169-187 (330)
433 1mdo_A ARNB aminotransferase; 32.1 40 0.0014 37.4 5.2 10 606-615 156-165 (393)
434 3tr0_A Guanylate kinase, GMP k 32.0 22 0.00074 35.9 2.7 19 493-511 6-24 (205)
435 3hvy_A Cystathionine beta-lyas 32.0 31 0.001 40.0 4.2 11 606-616 214-224 (427)
436 1ojl_A Transcriptional regulat 31.9 29 0.00098 38.2 3.8 19 493-511 24-42 (304)
437 1qhx_A CPT, protein (chloramph 31.7 24 0.00083 34.7 2.9 17 495-511 4-20 (178)
438 4fcw_A Chaperone protein CLPB; 31.7 32 0.0011 37.2 4.1 18 496-513 49-66 (311)
439 3ug7_A Arsenical pump-driving 31.7 38 0.0013 38.0 4.9 33 497-536 29-61 (349)
440 2j41_A Guanylate kinase; GMP, 31.6 22 0.00076 35.8 2.7 20 492-511 4-23 (207)
441 1g3q_A MIND ATPase, cell divis 31.6 36 0.0012 35.1 4.4 31 499-536 8-38 (237)
442 1u0j_A DNA replication protein 31.6 36 0.0012 37.1 4.4 44 467-513 74-123 (267)
443 2fsf_A Preprotein translocase 31.5 74 0.0025 40.1 7.7 53 701-759 114-171 (853)
444 1kht_A Adenylate kinase; phosp 31.5 29 0.00099 34.3 3.5 20 494-513 3-22 (192)
445 1hyq_A MIND, cell division inh 31.4 42 0.0014 35.3 5.0 31 498-535 7-37 (263)
446 3i16_A Aluminum resistance pro 31.3 32 0.0011 39.9 4.2 11 606-616 214-224 (427)
447 2yvu_A Probable adenylyl-sulfa 31.2 41 0.0014 33.5 4.6 21 494-514 13-33 (186)
448 1bg2_A Kinesin; motor protein, 31.1 29 0.001 38.9 3.7 25 487-511 69-95 (325)
449 2nr8_A Kinesin-like protein KI 31.1 29 0.00098 39.5 3.7 26 486-511 94-121 (358)
450 3lw7_A Adenylate kinase relate 31.1 24 0.00083 34.0 2.8 17 496-512 3-19 (179)
451 3q2s_C Cleavage and polyadenyl 31.0 4.9 0.00017 42.7 -2.5 21 798-820 112-132 (229)
452 2qor_A Guanylate kinase; phosp 30.9 22 0.00074 36.3 2.5 21 491-511 9-29 (204)
453 2c81_A Glutamine-2-deoxy-scyll 30.8 61 0.0021 36.5 6.5 12 606-617 159-170 (418)
454 3tqx_A 2-amino-3-ketobutyrate 30.8 1.2E+02 0.0042 33.3 8.9 9 606-614 207-215 (399)
455 3cnb_A DNA-binding response re 30.7 2.2E+02 0.0074 25.8 9.4 69 688-759 20-92 (143)
456 1y63_A LMAJ004144AAA protein; 30.7 26 0.0009 35.1 3.0 19 494-512 10-28 (184)
457 3heb_A Response regulator rece 30.6 3.3E+02 0.011 25.2 13.1 95 529-648 4-103 (152)
458 3qhx_A Cystathionine gamma-syn 30.6 1.5E+02 0.005 33.3 9.6 77 528-614 104-191 (392)
459 1rif_A DAR protein, DNA helica 30.6 77 0.0026 33.8 6.9 67 702-775 157-231 (282)
460 2ph1_A Nucleotide-binding prot 30.4 38 0.0013 36.0 4.4 29 500-535 25-53 (262)
461 4etp_A Kinesin-like protein KA 30.4 34 0.0012 39.5 4.2 25 487-511 132-158 (403)
462 2woo_A ATPase GET3; tail-ancho 30.3 36 0.0012 37.9 4.3 33 497-536 22-54 (329)
463 1um8_A ATP-dependent CLP prote 30.3 26 0.00089 39.4 3.2 19 494-512 72-90 (376)
464 1gc0_A Methionine gamma-lyase; 30.3 1.3E+02 0.0045 33.6 9.2 11 606-616 182-192 (398)
465 3kb2_A SPBC2 prophage-derived 30.3 31 0.0011 33.4 3.4 17 496-512 3-19 (173)
466 2zfi_A Kinesin-like protein KI 30.2 31 0.001 39.3 3.7 26 486-511 80-107 (366)
467 3jvv_A Twitching mobility prot 30.1 51 0.0018 37.2 5.6 19 493-511 122-140 (356)
468 3nwj_A ATSK2; P loop, shikimat 30.1 32 0.0011 36.9 3.7 23 491-513 45-67 (250)
469 3gbj_A KIF13B protein; kinesin 30.1 30 0.001 39.2 3.7 26 486-511 83-110 (354)
470 3b6u_A Kinesin-like protein KI 29.9 31 0.0011 39.4 3.7 26 486-511 92-119 (372)
471 1ihu_A Arsenical pump-driving 29.8 41 0.0014 40.5 5.0 35 495-536 9-43 (589)
472 3d3q_A TRNA delta(2)-isopenten 29.7 26 0.00087 39.6 3.0 18 496-513 9-26 (340)
473 1zp6_A Hypothetical protein AT 29.7 24 0.00081 35.2 2.5 19 493-511 8-26 (191)
474 2r9v_A ATP synthase subunit al 29.7 39 0.0013 40.2 4.6 27 486-512 164-193 (515)
475 3dc4_A Kinesin-like protein NO 29.6 33 0.0011 38.7 3.8 25 487-511 86-112 (344)
476 2xgj_A ATP-dependent RNA helic 29.6 48 0.0016 42.9 5.8 71 694-775 121-198 (1010)
477 3dr5_A Putative O-methyltransf 29.6 1.8E+02 0.0063 29.9 9.5 71 473-553 30-105 (221)
478 3q9l_A Septum site-determining 29.5 41 0.0014 35.2 4.4 30 499-535 8-37 (260)
479 2h58_A Kinesin-like protein KI 29.5 32 0.0011 38.6 3.7 26 486-511 71-98 (330)
480 3ri6_A O-acetylhomoserine sulf 29.5 1.8E+02 0.0061 33.4 10.2 77 528-615 120-208 (430)
481 1v8k_A Kinesin-like protein KI 29.5 33 0.0011 39.8 3.8 25 487-511 146-172 (410)
482 1n8p_A Cystathionine gamma-lya 29.4 1.1E+02 0.0039 34.3 8.5 11 606-616 174-184 (393)
483 3eph_A TRNA isopentenyltransfe 29.4 29 0.00099 40.2 3.4 18 497-514 5-22 (409)
484 1t5c_A CENP-E protein, centrom 29.3 32 0.0011 38.9 3.7 25 487-511 69-95 (349)
485 2vvg_A Kinesin-2; motor protei 29.2 33 0.0011 38.9 3.7 25 487-511 81-107 (350)
486 1z6g_A Guanylate kinase; struc 29.0 32 0.0011 35.7 3.4 20 491-510 20-39 (218)
487 3h75_A Periplasmic sugar-bindi 29.0 5.7E+02 0.019 27.5 15.0 33 689-723 193-225 (350)
488 4a14_A Kinesin, kinesin-like p 28.9 37 0.0013 38.3 4.1 25 487-511 75-101 (344)
489 2wbe_C Bipolar kinesin KRP-130 28.9 31 0.0011 39.4 3.5 25 486-510 91-117 (373)
490 1x88_A Kinesin-like protein KI 28.6 30 0.001 39.3 3.3 26 486-511 79-106 (359)
491 3ney_A 55 kDa erythrocyte memb 28.5 30 0.001 35.8 3.1 18 493-510 18-35 (197)
492 3cm0_A Adenylate kinase; ATP-b 28.5 22 0.00077 35.2 2.0 20 494-513 4-23 (186)
493 1tue_A Replication protein E1; 28.5 30 0.001 36.4 3.0 28 485-512 45-76 (212)
494 3k9g_A PF-32 protein; ssgcid, 28.4 57 0.002 34.4 5.4 19 500-518 34-52 (267)
495 3dmq_A RNA polymerase-associat 28.3 68 0.0023 41.2 6.9 77 528-613 502-584 (968)
496 3lre_A Kinesin-like protein KI 28.1 32 0.0011 39.0 3.4 25 487-511 97-123 (355)
497 2y65_A Kinesin, kinesin heavy 27.8 39 0.0013 38.5 4.1 25 487-511 76-102 (365)
498 1goj_A Kinesin, kinesin heavy 27.8 33 0.0011 39.0 3.4 25 487-511 72-98 (355)
499 3ntv_A MW1564 protein; rossman 27.8 5E+02 0.017 26.4 12.6 70 473-553 48-119 (232)
500 2owm_A Nckin3-434, related to 27.7 35 0.0012 39.9 3.7 28 485-512 126-155 (443)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.9e-55 Score=514.01 Aligned_cols=373 Identities=42% Similarity=0.679 Sum_probs=334.3
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcC-CCCCCCEEEEEc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN-NPRNGPTVLVLA 536 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~-~~~~g~kvLVLv 536 (1134)
.|.++.+...+++.|.+.||.+||++|+++|+.+++++|+|++|+||||||++|++|++..+..... ....++++|||+
T Consensus 57 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~ 136 (434)
T 2db3_A 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVS 136 (434)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEe
Confidence 4556677888999999999999999999999999999999999999999999999999987765332 223567999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
||++|+.||++++++++....+.+.+++|+.........+..+++|+|+||++|.+++....+.+.++++|||||||+|+
T Consensus 137 PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~ 216 (434)
T 2db3_A 137 PTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRML 216 (434)
T ss_dssp SSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHT
T ss_pred cCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhh
Confidence 99999999999999999888889999999998887777888899999999999999999888889999999999999999
Q ss_pred ccCchHHHHHHHHhC--CCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHH
Q 047890 617 DMGFEPQIRKIVNEM--PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQ 694 (1134)
Q Consensus 617 ~~gf~~~i~~IL~~l--~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ 694 (1134)
+++|...+..++..+ ...+|+|+||||++.++.+++..++.++..+.+..... ....+.+.+..+....+...|.+
T Consensus 217 ~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ 294 (434)
T 2db3_A 217 DMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG--ACSDVKQTIYEVNKYAKRSKLIE 294 (434)
T ss_dssp STTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC--CCTTEEEEEEECCGGGHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc--cccccceEEEEeCcHHHHHHHHH
Confidence 999999999999875 57889999999999999999999999888777654432 33456777777888888888888
Q ss_pred HHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEE
Q 047890 695 ILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVV 773 (1134)
Q Consensus 695 llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~V 773 (1134)
++.... .++||||++++.++.|++.|.+ ++.+..+||++++.+|+++++.|++|+++|||||+++++|||++++++|
T Consensus 295 ~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~V 372 (434)
T 2db3_A 295 ILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHV 372 (434)
T ss_dssp HHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEE
T ss_pred HHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEE
Confidence 887654 3499999999999999999954 6889999999999999999999999999999999999999999999999
Q ss_pred EeecCCCChhhHHHhhhccCcCCCcceeEEEec-ccchHHHHHHHHHHHhhcCCCCHHHHHH
Q 047890 774 INYDFPNGVEDYVHRIGRTGRAGATGVAHTFFS-EQDSKYAADLVKVLEGANQHVPPEVRDM 834 (1134)
Q Consensus 774 I~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~-~~d~~~~~~l~k~L~~~~~~lp~~l~dl 834 (1134)
|+||+|++.++|+||+||+||.|++|.|++|++ .++...+.++.+.|+...+++++++.++
T Consensus 373 I~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 373 INYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp EESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred EEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 999999999999999999999999999999998 5678889999999999999999998653
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.8e-52 Score=482.31 Aligned_cols=377 Identities=45% Similarity=0.718 Sum_probs=333.2
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcC--------------
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN-------------- 524 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~-------------- 524 (1134)
+.++.+...+++.|...||.+||++|.++|+.++.++++|++++||+|||++|++|++..+.....
T Consensus 17 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2i4i_A 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYG 96 (417)
T ss_dssp GGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTB
T ss_pred HhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccc
Confidence 555677888999999999999999999999999999999999999999999999999887654321
Q ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 525 NPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 525 ~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
.....+++|||+||++|+.||++++++++...++.+..++|+.........+..+++|+|+||++|.+++....+.+.++
T Consensus 97 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 176 (417)
T 2i4i_A 97 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFC 176 (417)
T ss_dssp SCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred cccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhC
Confidence 11234689999999999999999999998888899999999988888778888889999999999999998888889999
Q ss_pred EEEEEcchhhhhccCchHHHHHHHHhC--CC--CceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEE
Q 047890 605 SLLVLDEADRMLDMGFEPQIRKIVNEM--PP--HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHV 680 (1134)
Q Consensus 605 ~lVVIDEAHrll~~gf~~~i~~IL~~l--~~--~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~ 680 (1134)
++|||||||++++++|...+..++... +. ..+++++|||++.++..++..++.++..+.+.... .....+...+
T Consensus 177 ~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~ 254 (417)
T 2i4i_A 177 KYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG--STSENITQKV 254 (417)
T ss_dssp CEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSSEEEEE
T ss_pred cEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC--CCccCceEEE
Confidence 999999999999999999999998853 32 57899999999999999999998887766654332 2334566667
Q ss_pred EecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc
Q 047890 681 EVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759 (1134)
Q Consensus 681 ~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd 759 (1134)
..+...++...+..+++....+.++||||++++.++.+++.|.+ ++.+..+|++++.++|.++++.|++|+++|||||+
T Consensus 255 ~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 255 VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp EECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred EEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 77777888888888888776788999999999999999999954 78899999999999999999999999999999999
Q ss_pred cceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhh
Q 047890 760 VAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALR 837 (1134)
Q Consensus 760 vl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r 837 (1134)
++++|||++++++||+||+|++...|+||+||++|.|++|.|++|+++.+...+.++.+.+......++.++.+++..
T Consensus 335 ~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 412 (417)
T 2i4i_A 335 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYE 412 (417)
T ss_dssp HHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHTC
T ss_pred hhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.2e-50 Score=471.56 Aligned_cols=366 Identities=33% Similarity=0.570 Sum_probs=320.5
Q ss_pred hhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 457 ~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
..+.++.+...+++.|+..||.+|+++|.++|+.++.++++|++++||+|||++|+++++..+.. ...+.++|||+
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~----~~~~~~~lil~ 112 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI----QVRETQALILA 112 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT----TSCSCCEEEEC
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh----ccCCceEEEEc
Confidence 45667788899999999999999999999999999999999999999999999999998876531 12467999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
||++|+.||++++++++...++.+..++++.........+..+++|+|+||++|.+++....+.+.++++|||||||+++
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHT
T ss_pred CcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHH
Confidence 99999999999999999888899999999988887777777789999999999999998888888999999999999999
Q ss_pred ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc-hhHHHHHHHHH
Q 047890 617 DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP-QMEKERRLQQI 695 (1134)
Q Consensus 617 ~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~-~~ek~~~L~~l 695 (1134)
+++|...+..++..++...++|++|||++.++.+++..++.++..+.+.... .....+.+.+..+. ...+...|..+
T Consensus 193 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~l~~~ 270 (410)
T 2j0s_A 193 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE--LTLEGIKQFFVAVEREEWKFDTLCDL 270 (410)
T ss_dssp STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG--CSCTTEEEEEEEESSTTHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc--ccCCCceEEEEEeCcHHhHHHHHHHH
Confidence 9999999999999999999999999999999998888888887766553322 22233444444444 34477777777
Q ss_pred HHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEE
Q 047890 696 LRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI 774 (1134)
Q Consensus 696 lk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI 774 (1134)
++... ..++||||++++.++.|++.|.+ ++.+..+||+++.++|.++++.|++|+++|||||+++++|||++++++||
T Consensus 271 ~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 349 (410)
T 2j0s_A 271 YDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349 (410)
T ss_dssp HHHHT-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE
T ss_pred HHhcC-CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE
Confidence 77654 46999999999999999999954 68899999999999999999999999999999999999999999999999
Q ss_pred eecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCH
Q 047890 775 NYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPP 829 (1134)
Q Consensus 775 ~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~ 829 (1134)
++|+|++...|+||+||++|.|++|.|++|+...+...+.++.+.+.....+++.
T Consensus 350 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 350 NYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp ESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred EECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 9999999999999999999999999999999999998888888877766555543
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.1e-50 Score=467.35 Aligned_cols=374 Identities=32% Similarity=0.541 Sum_probs=307.0
Q ss_pred HhhhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 047890 454 EVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVL 533 (1134)
Q Consensus 454 e~~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvL 533 (1134)
+....+.++.+...+++.|+..||..|+++|+++|+.++.++++|++++||+|||++|+++++..+.. ...+.++|
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----~~~~~~~l 112 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL----DLKATQAL 112 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT----TSCSCCEE
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh----cCCceeEE
Confidence 33455667778889999999999999999999999999999999999999999999999998876532 12466899
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhc-CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcch
Q 047890 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELD-QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA 612 (1134)
Q Consensus 534 VLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEA 612 (1134)
||+||++|+.||++++++++...++.+..++++.........+. ..++|+|+||++|.+++....+.+..+++||||||
T Consensus 113 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 113 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 192 (414)
T ss_dssp EECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSH
T ss_pred EEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECH
Confidence 99999999999999999998888889999999887776666655 66899999999999999888888899999999999
Q ss_pred hhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc-hhHHHHH
Q 047890 613 DRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP-QMEKERR 691 (1134)
Q Consensus 613 Hrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~-~~ek~~~ 691 (1134)
|++.+++|...+..++..+....++|+||||++.++.+++..++.++..+.+.... .....+...+..+. ...+...
T Consensus 193 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 270 (414)
T 3eiq_A 193 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE--LTLEGIRQFYINVEREEWKLDT 270 (414)
T ss_dssp HHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC--CCTTSCCEEEEECSSSTTHHHH
T ss_pred HHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc--cCCCCceEEEEEeChHHhHHHH
Confidence 99999999999999999999999999999999999999999998888766553322 12223344444333 3446777
Q ss_pred HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcc
Q 047890 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770 (1134)
Q Consensus 692 L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v 770 (1134)
+..+++.. ...++||||++++.++.+++.|.+ ++.+..+|++++.++|.++++.|++|+++|||||+++++|||++++
T Consensus 271 l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 349 (414)
T 3eiq_A 271 LCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV 349 (414)
T ss_dssp HHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGC
T ss_pred HHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCC
Confidence 77777654 456899999999999999999965 6889999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHH
Q 047890 771 RVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDM 834 (1134)
Q Consensus 771 ~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dl 834 (1134)
++||++++|++..+|+||+||++|.|++|.|++|+.+.+...+.++.+.++....+++..+.++
T Consensus 350 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 350 SLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp SCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 9999999999999999999999999999999999999999999999988888877787776654
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.9e-49 Score=457.03 Aligned_cols=367 Identities=33% Similarity=0.562 Sum_probs=321.8
Q ss_pred hhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 457 ~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
..|.++.+...+++.|...||.+|+++|.++++.++.++++|++++||+|||++|+++++..+.. ...+.++|||+
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~----~~~~~~~lil~ 96 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP----KLNKIQALIMV 96 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT----TSCSCCEEEEC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh----ccCCccEEEEc
Confidence 34677788899999999999999999999999999999999999999999999999998876532 12456899999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
|+++|+.||++++++++...++.+..++++.........+...++|+|+||++|.+++......+.++++|||||||++.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 97 PTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 176 (400)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHS
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhh
Confidence 99999999999999999888889999998887776666677789999999999999998877888999999999999999
Q ss_pred ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHH
Q 047890 617 DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL 696 (1134)
Q Consensus 617 ~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ll 696 (1134)
+..|...+..++..++...+++++|||++..+.+++..++.++..+.+... .....+...+..+....+...+..++
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~l~~~~ 253 (400)
T 1s2m_A 177 SRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVEERQKLHCLNTLF 253 (400)
T ss_dssp SHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS---CBCTTEEEEEEECCGGGHHHHHHHHH
T ss_pred hhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc---cccCCceeEEEEechhhHHHHHHHHH
Confidence 888888999999998889999999999999999988888877765544321 23344566677777777888888887
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN 775 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~ 775 (1134)
+.. ...++||||++++.++.+++.|.. ++.+..+|++++.++|.++++.|++|+++|||||+++++|||++++++||+
T Consensus 254 ~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~ 332 (400)
T 1s2m_A 254 SKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN 332 (400)
T ss_dssp HHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE
T ss_pred hhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 764 457999999999999999999965 688999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHH
Q 047890 776 YDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEV 831 (1134)
Q Consensus 776 ~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l 831 (1134)
+++|++...|+||+||++|.|++|.|++|++..+...+.++.+.+......++..+
T Consensus 333 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 333 FDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp SSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred eCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 99999999999999999999999999999999999888888887776665555443
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.7e-48 Score=446.53 Aligned_cols=366 Identities=29% Similarity=0.497 Sum_probs=310.7
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.|.++.+...+++.|...||.+|+++|.++|+.++.++++|+.++||+|||++|+++++..+.. .....++|||||
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~----~~~~~~~lil~P 84 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP----VTGQVSVLVMCH 84 (391)
T ss_dssp CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC----CTTCCCEEEECS
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc----cCCCeeEEEECC
Confidence 3556677888899999999999999999999999999999999999999999999998876532 124568999999
Q ss_pred cHHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhh
Q 047890 538 TRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrl 615 (1134)
|++|+.||+++++++.... ++.+.+++|+.........+.. .++|+|+||++|.+++....+.+.++++|||||||++
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~ 164 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 164 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHH
Confidence 9999999999999997765 6888888888776655555543 4799999999999999888888899999999999999
Q ss_pred hcc-CchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHH
Q 047890 616 LDM-GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQ 694 (1134)
Q Consensus 616 l~~-gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ 694 (1134)
.++ ++...+..++..++...++|++|||++..+..++..++.++..+.+..... .....+...+..+...++...+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 243 (391)
T 1xti_A 165 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK-LTLHGLQQYYVKLKDNEKNRKLFD 243 (391)
T ss_dssp TSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCC-CCCTTCEEEEEECCGGGHHHHHHH
T ss_pred hhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccc-cCcccceEEEEEcCchhHHHHHHH
Confidence 874 678888889988888999999999999999999999988877665543322 223345566666777788888888
Q ss_pred HHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEE
Q 047890 695 ILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVV 773 (1134)
Q Consensus 695 llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~V 773 (1134)
+++.. ...++||||++++.++.+++.|.+ ++.+..+|++++.++|.++++.|++|+++|||||+++++|||++++++|
T Consensus 244 ~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~V 322 (391)
T 1xti_A 244 LLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 322 (391)
T ss_dssp HHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEE
T ss_pred HHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEE
Confidence 88765 568999999999999999999954 6789999999999999999999999999999999999999999999999
Q ss_pred EeecCCCChhhHHHhhhccCcCCCcceeEEEecccc-hHHHHHHHHHHHhhcCCCCH
Q 047890 774 INYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQD-SKYAADLVKVLEGANQHVPP 829 (1134)
Q Consensus 774 I~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d-~~~~~~l~k~L~~~~~~lp~ 829 (1134)
|++++|++...|+||+||++|.|++|.|++|+...+ ...+.++.+.+.....+++.
T Consensus 323 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 323 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp EESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred EEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 999999999999999999999999999999998764 34455555555544444444
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-47 Score=437.24 Aligned_cols=355 Identities=35% Similarity=0.577 Sum_probs=309.2
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
.+.++.+...++..|.+.||.+|+++|+++|+.++.+ +++|+.++||+|||++|+++++..+.. ..+.++|||+
T Consensus 7 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-----~~~~~~lil~ 81 (367)
T 1hv8_A 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-----NNGIEAIILT 81 (367)
T ss_dssp CGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-----SSSCCEEEEC
T ss_pred chhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-----cCCCcEEEEc
Confidence 3566778889999999999999999999999999998 699999999999999999988876532 2467899999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
|+++|+.||++++.++.....+.+..++++.........+. .++|+|+||+.|.+++....+.+.++++|||||||++.
T Consensus 82 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 160 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEML 160 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhh
Confidence 99999999999999998877888888888877665555544 68999999999999998888888999999999999999
Q ss_pred ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHH
Q 047890 617 DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQIL 696 (1134)
Q Consensus 617 ~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~ll 696 (1134)
+++|...+..++..+....++|++|||++.++.+++..++.+...+.... ...+...+..+...++...+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~l 234 (367)
T 1hv8_A 161 NMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI------NANIEQSYVEVNENERFEALCRLL 234 (367)
T ss_dssp TTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS------SSSSEEEEEECCGGGHHHHHHHHH
T ss_pred hhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC------CCCceEEEEEeChHHHHHHHHHHH
Confidence 99999999999999989999999999999998888888877655444322 123445556666677777777666
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN 775 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~ 775 (1134)
+ ....++||||++++.++.+++.|.+ ++.+..+|++++.++|.++++.|++|+++|||||+++++|||++++++||+
T Consensus 235 ~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 312 (367)
T 1hv8_A 235 K--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN 312 (367)
T ss_dssp C--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE
T ss_pred h--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE
Confidence 5 4567899999999999999999954 678999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCC
Q 047890 776 YDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQH 826 (1134)
Q Consensus 776 ~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~ 826 (1134)
+++|++..+|+||+||++|.|++|.|+++++..+...+..+.+.++.....
T Consensus 313 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 313 YHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp SSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred ecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999998888888777655443
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.8e-47 Score=467.32 Aligned_cols=357 Identities=30% Similarity=0.514 Sum_probs=294.8
Q ss_pred cchhHHHHHHHcCCCCCCHHHHHHHHHHH--cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH
Q 047890 464 ATLPRVASMHSAGFSSPTPIQAQTWPIAL--QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL 541 (1134)
Q Consensus 464 v~~~~l~~l~~~Gf~~prpiQ~eaI~~il--~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL 541 (1134)
+...+++.|...||..||++|.++|+.++ .++++|++|+||+|||++|++|++..+..........+++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 67788999999999999999999999999 7789999999999999999999998887654433456799999999999
Q ss_pred HHHHHHHHHHhcc----CCCCceEEecCCCCCchhHHhhc-CCCcEEEeChHHHHHHHHhc-ccCCCCeEEEEEcchhhh
Q 047890 542 ATQIQDEANKFGR----SSRLSCTCLYGGAPKGPQLRELD-QGADIVVATPGRLNDILEMK-KIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 542 a~Q~~~el~kl~~----~~~i~v~~l~GG~~~~~~l~~l~-~~~dIIVaTPerL~~lL~~~-~l~l~~l~lVVIDEAHrl 615 (1134)
+.||++++++++. ...+.+..++++.........+. ..++|||+||++|.+++... ...+..+++|||||||+|
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 9999999999752 23467788888887766666654 36899999999999988754 456788999999999999
Q ss_pred hccCchHHHHHHHHhCC-------CCceEEEEeccCchhHHHHHHhhccCCeeeeeccch--hhhcccceeeEEEecchh
Q 047890 616 LDMGFEPQIRKIVNEMP-------PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVD--ELAANKAITQHVEVVPQM 686 (1134)
Q Consensus 616 l~~gf~~~i~~IL~~l~-------~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d--~l~~~~~i~~~~~~v~~~ 686 (1134)
++++|...+..++..++ ..+++|+||||++..+.+++..++.++..+.+.... .......+...+......
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 267 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecch
Confidence 99999999988877653 367899999999999999999998877655443221 112223344444443322
Q ss_pred -H-HHHHHHHH---HHHHhcCCEEEEEeCcHHHHHHHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeee
Q 047890 687 -E-KERRLQQI---LRAQERGSRVIIFCSTKRLCDQLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757 (1134)
Q Consensus 687 -e-k~~~L~~l---lk~~~~~~kvLVF~nT~~~ae~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVA 757 (1134)
. ....+..+ +.....+.++||||+|+..++.|++.|.+ ++.+..+|++|+..+|.++++.|++|+++||||
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 347 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 2 22333333 33334578999999999999999998854 788999999999999999999999999999999
Q ss_pred cccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHH
Q 047890 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVL 820 (1134)
Q Consensus 758 Tdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L 820 (1134)
|+++++|||+++|++||++++|++.+.|+||+||++|+|+.|.|++|+...+...+..+.+..
T Consensus 348 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 348 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998887777665543
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.4e-47 Score=462.22 Aligned_cols=357 Identities=30% Similarity=0.514 Sum_probs=292.9
Q ss_pred cchhHHHHHHHcCCCCCCHHHHHHHHHHH--cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH
Q 047890 464 ATLPRVASMHSAGFSSPTPIQAQTWPIAL--QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL 541 (1134)
Q Consensus 464 v~~~~l~~l~~~Gf~~prpiQ~eaI~~il--~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL 541 (1134)
+...+++.|...||.+||++|.++|+.++ .++++|++|+||+|||++|++|++..+..........+++|||+||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 67788999999999999999999999999 6789999999999999999999998887654433456789999999999
Q ss_pred HHHHHHHHHHhcc----CCCCceEEecCCCCCchhHHhh-cCCCcEEEeChHHHHHHHHhc-ccCCCCeEEEEEcchhhh
Q 047890 542 ATQIQDEANKFGR----SSRLSCTCLYGGAPKGPQLREL-DQGADIVVATPGRLNDILEMK-KIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 542 a~Q~~~el~kl~~----~~~i~v~~l~GG~~~~~~l~~l-~~~~dIIVaTPerL~~lL~~~-~l~l~~l~lVVIDEAHrl 615 (1134)
+.|++++++++.. ...+.+..++++.........+ ...++|||+||++|.+++... ...+..+++|||||||+|
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 9999999998743 2245677888887766666555 346899999999999988754 345788999999999999
Q ss_pred hccCchHHHHHHHHhCC-------CCceEEEEeccCchhHHHHHHhhccCCeeeeeccch--hhhcccceeeEEEecchh
Q 047890 616 LDMGFEPQIRKIVNEMP-------PHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVD--ELAANKAITQHVEVVPQM 686 (1134)
Q Consensus 616 l~~gf~~~i~~IL~~l~-------~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d--~l~~~~~i~~~~~~v~~~ 686 (1134)
++++|...+..++..+. ..+++|+||||++..+.+++..++.++..+.+.... .......+...+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999999988876652 367899999999999999999988877655443222 112223344444433322
Q ss_pred -HH-HHHHHHH---HHHHhcCCEEEEEeCcHHHHHHHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeee
Q 047890 687 -EK-ERRLQQI---LRAQERGSRVIIFCSTKRLCDQLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA 757 (1134)
Q Consensus 687 -ek-~~~L~~l---lk~~~~~~kvLVF~nT~~~ae~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVA 757 (1134)
.+ ...+..+ +.....+.++||||++++.++.|++.|.+ ++.+..+|++|+..+|..+++.|++|+++||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22 2223333 33335578999999999999999998854 788999999999999999999999999999999
Q ss_pred cccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHH
Q 047890 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVL 820 (1134)
Q Consensus 758 Tdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L 820 (1134)
|+++++|||+++|++||++++|++...|+||+||+||.|+.|.|++|+...+...+..+.+.+
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998887777776553
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.2e-46 Score=436.40 Aligned_cols=362 Identities=28% Similarity=0.456 Sum_probs=299.3
Q ss_pred hhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 047890 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534 (1134)
Q Consensus 457 ~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLV 534 (1134)
..+.++.+...+++.|...||.+|+++|.++|+.++.+ +++|++++||+|||++|+++++..+.. ....+++||
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~----~~~~~~~li 100 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----ANKYPQCLC 100 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT----TSCSCCEEE
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh----cCCCCCEEE
Confidence 44566778888999999999999999999999999997 999999999999999999998876532 224568999
Q ss_pred EcccHHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh-cccCCCCeEEEEEcch
Q 047890 535 LAPTRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM-KKIDFGQVSLLVLDEA 612 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~-~~l~l~~l~lVVIDEA 612 (1134)
|+||++|+.|+++.++++.... .+.+....++....... ...++|+|+||++|.+++.. ..+.+.++++||||||
T Consensus 101 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 101 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred ECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 9999999999999999987653 46677777665443222 34579999999999998854 5567789999999999
Q ss_pred hhhhc-cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc-hhHHHH
Q 047890 613 DRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP-QMEKER 690 (1134)
Q Consensus 613 Hrll~-~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~-~~ek~~ 690 (1134)
|++.+ .++...+..++..+....++|++|||++..+..++..++.++..+.+..... ....+...+..+. ...+..
T Consensus 178 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 255 (412)
T 3fht_A 178 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE--TLDTIKQYYVLCSSRDEKFQ 255 (412)
T ss_dssp HHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS--SCTTEEEEEEECSSHHHHHH
T ss_pred HHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc--cccCceEEEEEcCChHHHHH
Confidence 99987 6788888899999999999999999999999999999998887766543322 2333444444443 345666
Q ss_pred HHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCc
Q 047890 691 RLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769 (1134)
Q Consensus 691 ~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~ 769 (1134)
.+..++... ...++||||++++.++.|++.|.+ ++.+..+|++++..+|.++++.|++|+++|||||+++++|||+++
T Consensus 256 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 334 (412)
T 3fht_A 256 ALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 334 (412)
T ss_dssp HHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTT
T ss_pred HHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccC
Confidence 677766654 457999999999999999999954 678999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCC------ChhhHHHhhhccCcCCCcceeEEEecccc-hHHHHHHHHHHHhhcCCCC
Q 047890 770 IRVVINYDFPN------GVEDYVHRIGRTGRAGATGVAHTFFSEQD-SKYAADLVKVLEGANQHVP 828 (1134)
Q Consensus 770 v~~VI~~d~P~------s~~~yiQRiGRagR~GqkG~~ii~~~~~d-~~~~~~l~k~L~~~~~~lp 828 (1134)
+++||++|+|+ +..+|+||+||+||.|+.|.|++|++..+ ......+.+.+......++
T Consensus 335 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 335 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp EEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 99999999995 56899999999999999999999998765 5566666666655544444
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.2e-46 Score=432.98 Aligned_cols=345 Identities=28% Similarity=0.507 Sum_probs=293.1
Q ss_pred hhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 047890 456 YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVL 533 (1134)
Q Consensus 456 ~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvL 533 (1134)
...|.++.+...+++.|+..||.+|+++|.++++.++.+ +++|++++||+|||++|+++++..+.. ...+.++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----~~~~~~~l 79 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP----EDASPQAI 79 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT----TCCSCCEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc----CCCCccEE
Confidence 345667788889999999999999999999999999998 999999999999999999998876532 12466899
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchh
Q 047890 534 VLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEAD 613 (1134)
Q Consensus 534 VLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAH 613 (1134)
||+|+++|+.||++++++++....+.+..++++...... ...++|+|+||++|.+++....+.+.++++|||||||
T Consensus 80 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 80 CLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 155 (395)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHH
T ss_pred EECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChh
Confidence 999999999999999999988878888887776543221 2358999999999999998888889999999999999
Q ss_pred hhhc-cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEec-chhHHHHH
Q 047890 614 RMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVV-PQMEKERR 691 (1134)
Q Consensus 614 rll~-~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v-~~~ek~~~ 691 (1134)
++.+ .++...+..++..++...++|++|||++..+..++..++.++..+.+.... .....+...+..+ ....+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 233 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE--VNVDAIKQLYMDCKNEADKFDV 233 (395)
T ss_dssp HHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG--CSCTTEEEEEEECSSHHHHHHH
T ss_pred hhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc--cccccccEEEEEcCchHHHHHH
Confidence 9988 678888889999999999999999999999999999988877766553322 2223344444333 44455556
Q ss_pred HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcc
Q 047890 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770 (1134)
Q Consensus 692 L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v 770 (1134)
+..+++.. ...++||||++++.++.+++.|.+ ++.+..+|++++..+|.++++.|++|+++|||||+++++|||++++
T Consensus 234 l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 312 (395)
T 3pey_A 234 LTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTV 312 (395)
T ss_dssp HHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccC
Confidence 66655543 457999999999999999999954 6789999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCC------ChhhHHHhhhccCcCCCcceeEEEecccchH
Q 047890 771 RVVINYDFPN------GVEDYVHRIGRTGRAGATGVAHTFFSEQDSK 811 (1134)
Q Consensus 771 ~~VI~~d~P~------s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~ 811 (1134)
++||++|+|+ +...|+||+||++|.|++|.|++|+...+..
T Consensus 313 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 359 (395)
T 3pey_A 313 SMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSF 359 (395)
T ss_dssp EEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHH
T ss_pred CEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHH
Confidence 9999999999 9999999999999999999999999876544
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.5e-48 Score=449.83 Aligned_cols=367 Identities=32% Similarity=0.540 Sum_probs=179.8
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.+.++.+...+++.|...||.+|+++|+++++.++.++++|++++||+|||++|+++++..+.. ...++++|||+|
T Consensus 22 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~----~~~~~~~lil~P 97 (394)
T 1fuu_A 22 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT----SVKAPQALMLAP 97 (394)
T ss_dssp SSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT----TCCSCCEEEECS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc----cCCCCCEEEEcC
Confidence 4666778889999999999999999999999999999999999999999999999998876532 234678999999
Q ss_pred cHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 538 TRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
+++|+.||++++.++....++.+..++|+.........+. .++|+|+||++|.+.+....+.+.++++|||||||++.+
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS 176 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhC
Confidence 9999999999999998888889999998877655544443 589999999999999988888888999999999999999
Q ss_pred cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecch-hHHHHHHHHHH
Q 047890 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKERRLQQIL 696 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~-~ek~~~L~~ll 696 (1134)
.+|...+..++..++...++|++|||++..+.++...++.++..+.+..... ....+...+..+.. ..+...+..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (394)
T 1fuu_A 177 SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL--TLEGIKQFYVNVEEEEYKYECLTDLY 254 (394)
T ss_dssp TTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-------------------------------
T ss_pred CCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc--cCCCceEEEEEcCchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999988888877665533221 11222222222222 22455566666
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN 775 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~ 775 (1134)
+.. ...++||||++++.++.+++.|.+ ++.+..+|++++.++|.++++.|++|+.+|||||+++++|||++++++||+
T Consensus 255 ~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~ 333 (394)
T 1fuu_A 255 DSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN 333 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE
Confidence 543 356899999999999999999965 578899999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHH
Q 047890 776 YDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVR 832 (1134)
Q Consensus 776 ~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~ 832 (1134)
+++|++...|+||+||++|.|++|.|++|+.+.+...+..+.+.+......++..+.
T Consensus 334 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 334 YDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp ---------------------------------------------------------
T ss_pred eCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 999999999999999999999999999999999888887777777666555555443
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.9e-46 Score=421.06 Aligned_cols=334 Identities=36% Similarity=0.588 Sum_probs=282.2
Q ss_pred chhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHH
Q 047890 465 TLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQ 544 (1134)
Q Consensus 465 ~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q 544 (1134)
...+++.|.++||..|+++|.++++.+++++++|+.++||+|||++|+++++.. +.++|||+|+++|+.|
T Consensus 2 ~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 2 NEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEECSSHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------cCCEEEEeCCHHHHHH
Confidence 346688899999999999999999999999999999999999999999887652 4589999999999999
Q ss_pred HHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHH
Q 047890 545 IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQI 624 (1134)
Q Consensus 545 ~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i 624 (1134)
|++++++++...++.+..++++.........+. .++|+|+||++|.+++....+.+.++++|||||||++.++++...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~ 150 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDI 150 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHH
Confidence 999999998888888888988877665555544 4899999999999998887778889999999999999999999999
Q ss_pred HHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCE
Q 047890 625 RKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSR 704 (1134)
Q Consensus 625 ~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~k 704 (1134)
..++..+....+++++|||++..+.+++..++.++..+... .....+...+..+....+. .+ ..++ ...+.+
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~ 222 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRS-KV-QALR-ENKDKG 222 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHH-HH-HHHH-TCCCSS
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHH-HH-HHHH-hCCCCc
Confidence 99999998889999999999999999988888776655322 1122333343333333222 12 2222 245678
Q ss_pred EEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhh
Q 047890 705 VIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVED 784 (1134)
Q Consensus 705 vLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~ 784 (1134)
+||||++++.++.+++.|. .+..+|++++..+|.+++++|++|+++|||||+++++|||++++++||++++|++...
T Consensus 223 ~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~ 299 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRT 299 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHH
T ss_pred EEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHH
Confidence 9999999999999999886 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHH
Q 047890 785 YVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLE 821 (1134)
Q Consensus 785 yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~ 821 (1134)
|+||+||++|.|++|.|++|+. .+.....++.+.++
T Consensus 300 ~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 300 YIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred hhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999 77777777666554
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.7e-46 Score=445.84 Aligned_cols=361 Identities=28% Similarity=0.457 Sum_probs=169.4
Q ss_pred hhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 047890 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLV 534 (1134)
Q Consensus 457 ~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLV 534 (1134)
..+.++.+...+++.|+.+||..|+++|.++|+.++.+ +++|++|+||||||++|+++++..+.. ....+++||
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~----~~~~~~~li 167 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----ANKYPQCLC 167 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT----TSCSCCEEE
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh----cCCCCcEEE
Confidence 34566778889999999999999999999999999987 899999999999999999998875532 124568999
Q ss_pred EcccHHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh-cccCCCCeEEEEEcch
Q 047890 535 LAPTRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM-KKIDFGQVSLLVLDEA 612 (1134)
Q Consensus 535 LvPTreLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~-~~l~l~~l~lVVIDEA 612 (1134)
|+||++|+.|+++.++++.... .+.+.+..++....... ...++|||+||++|.+++.. ..+.+.++++||||||
T Consensus 168 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEa 244 (479)
T 3fmp_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (479)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCH
T ss_pred EeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECH
Confidence 9999999999999999887643 46666676665443221 33578999999999999855 4567789999999999
Q ss_pred hhhhc-cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecch-hHHHH
Q 047890 613 DRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ-MEKER 690 (1134)
Q Consensus 613 Hrll~-~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~-~ek~~ 690 (1134)
|++++ .++...+..++..++..+++|++|||++.++..++..++.++..+.+..... ....+.+.+..+.. ..+..
T Consensus 245 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 322 (479)
T 3fmp_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE--TLDTIKQYYVLCSSRDEKFQ 322 (479)
T ss_dssp HHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------
T ss_pred HHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc--CcCCceEEEEEeCCHHHHHH
Confidence 99987 5788888899999999999999999999999999999998887776644322 12223333333322 34445
Q ss_pred HHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCc
Q 047890 691 RLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD 769 (1134)
Q Consensus 691 ~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~ 769 (1134)
.|..++... ...++||||+++..++.|++.|.. ++.+..+|++++..+|..+++.|++|+++|||||+++++|||+++
T Consensus 323 ~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~ 401 (479)
T 3fmp_B 323 ALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcccc
Confidence 555555443 346899999999999999999965 678999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCC------ChhhHHHhhhccCcCCCcceeEEEecccc-hHHHHHHHHHHHhhcCCC
Q 047890 770 IRVVINYDFPN------GVEDYVHRIGRTGRAGATGVAHTFFSEQD-SKYAADLVKVLEGANQHV 827 (1134)
Q Consensus 770 v~~VI~~d~P~------s~~~yiQRiGRagR~GqkG~~ii~~~~~d-~~~~~~l~k~L~~~~~~l 827 (1134)
+++||+||+|+ +...|+||+||+||.|+.|.|++|+...+ ...+..+.+.+......+
T Consensus 402 v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 402 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceEC
Confidence 99999999995 56899999999999999999999998665 555555555554443333
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.7e-43 Score=430.94 Aligned_cols=340 Identities=19% Similarity=0.293 Sum_probs=267.3
Q ss_pred ccccchhHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccH
Q 047890 461 EVSATLPRVASMHS-AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTR 539 (1134)
Q Consensus 461 ev~v~~~~l~~l~~-~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTr 539 (1134)
++.+...++..|.. +||..|+|+|.++|+.++.++++|+++|||+|||++|++|++. ...++|||+|++
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~----------~~g~~lVisP~~ 94 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC----------SDGFTLVICPLI 94 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT----------SSSEEEEECSCH
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH----------cCCcEEEEeCHH
Confidence 45566677888887 6999999999999999999999999999999999999999864 235899999999
Q ss_pred HHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHh------hcCCCcEEEeChHHHHH---HHH--hcccCCCCeEEEE
Q 047890 540 ELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE------LDQGADIVVATPGRLND---ILE--MKKIDFGQVSLLV 608 (1134)
Q Consensus 540 eLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~------l~~~~dIIVaTPerL~~---lL~--~~~l~l~~l~lVV 608 (1134)
+|+.|+.+.++++ ++.+..+.++......... ....++|||+||++|.. ++. ...+.+.++++||
T Consensus 95 ~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 95 SLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 9999999999997 4677888887765433221 23568999999998742 221 2244577899999
Q ss_pred EcchhhhhccC--chHHHHH--HHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecc
Q 047890 609 LDEADRMLDMG--FEPQIRK--IVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVP 684 (1134)
Q Consensus 609 IDEAHrll~~g--f~~~i~~--IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~ 684 (1134)
|||||++.+++ |.+.+.. ++....+..++|+||||++..+.+.+..++.....+.+... .....+...+....
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~~~ 247 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYEVRQKP 247 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEEEEECC
T ss_pred EECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEEEEeCC
Confidence 99999999987 7776654 34444567889999999999888777776654332222111 11122322222221
Q ss_pred --hhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccc
Q 047890 685 --QMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVA 761 (1134)
Q Consensus 685 --~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl 761 (1134)
..++...|..+++....+.++||||++++.++.|++.|.. ++.+..+|++|+.++|.++++.|++|+++|||||+++
T Consensus 248 ~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 248 SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 1223334444444333578999999999999999999954 7889999999999999999999999999999999999
Q ss_pred eeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHH
Q 047890 762 ARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLV 817 (1134)
Q Consensus 762 ~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~ 817 (1134)
++|||+++|++||++++|.+.+.|+|++||+||+|+++.|++|+...|......++
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887766554443
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-44 Score=433.40 Aligned_cols=357 Identities=27% Similarity=0.465 Sum_probs=252.8
Q ss_pred ccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 461 EVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 461 ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
...+...+++.+...||..|+++|.+||+.++.+ +++|++++||+|||++|+++++..+.. ...+.++|||+|+
T Consensus 123 ~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~----~~~~~~vLvl~P~ 198 (508)
T 3fho_A 123 XXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA----SVPKPQAICLAPS 198 (508)
T ss_dssp ----------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT----TCCSCCEEEECSC
T ss_pred ccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh----CCCCceEEEEECc
Confidence 3345566788888899999999999999999998 999999999999999999998876642 1245689999999
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc-
Q 047890 539 RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD- 617 (1134)
Q Consensus 539 reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~- 617 (1134)
++|+.|+++++++++....+.+....++.... .....++|+|+||+.|.+++....+.+.++++|||||||++.+
T Consensus 199 ~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~ 274 (508)
T 3fho_A 199 RELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ 274 (508)
T ss_dssp HHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhccc
Confidence 99999999999999877666666655544322 1233689999999999999988888899999999999999987
Q ss_pred cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEec-chhHHHHHHHHHH
Q 047890 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVV-PQMEKERRLQQIL 696 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v-~~~ek~~~L~~ll 696 (1134)
.++...+..++..+....++|++|||++..+..+...++.++..+.+..... ....+...+..+ ....+...+..++
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 275 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL--SVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC------CCCCEEEEC--CHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccC--CcccceEEEEECCchHHHHHHHHHHH
Confidence 6788999999999999999999999999999999998888876665533221 122233333333 3445556666666
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN 775 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~ 775 (1134)
+.. ...++||||++++.++.+++.|.+ ++.+..+|++++..+|..+++.|++|+++|||||+++++|||++++++||+
T Consensus 353 ~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 353 GLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp C----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred Hhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 554 457999999999999999999965 678999999999999999999999999999999999999999999999999
Q ss_pred ecCC------CChhhHHHhhhccCcCCCcceeEEEecc-cchHHHHHHHHHHHhhcCCCC
Q 047890 776 YDFP------NGVEDYVHRIGRTGRAGATGVAHTFFSE-QDSKYAADLVKVLEGANQHVP 828 (1134)
Q Consensus 776 ~d~P------~s~~~yiQRiGRagR~GqkG~~ii~~~~-~d~~~~~~l~k~L~~~~~~lp 828 (1134)
+++| .+...|+||+||+||.|+.|.|++|+.. .+......+.+.+......++
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVP 491 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC---
T ss_pred ECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCC
Confidence 9999 7899999999999999999999999984 455556666666555444444
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.8e-42 Score=416.77 Aligned_cols=339 Identities=24% Similarity=0.379 Sum_probs=266.4
Q ss_pred hccccccchhHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 458 QRHEVSATLPRVASMHS-AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~-~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
.++++.+...++..|.+ +||..|+++|.++|+.+++++++|+++|||+|||++|++|++.. ..++|||+
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------~g~~lvi~ 72 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----------NGLTVVVS 72 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS----------SSEEEEEC
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh----------CCCEEEEC
Confidence 34556666777888887 89999999999999999999999999999999999999998742 34899999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH---hh-cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcch
Q 047890 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR---EL-DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA 612 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~---~l-~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEA 612 (1134)
|+++|+.|+.+.++++ ++.+..+.++........ .+ ....+|+|+||++|........+...++++||||||
T Consensus 73 P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 73 PLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEA 148 (523)
T ss_dssp SCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSG
T ss_pred ChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCc
Confidence 9999999999999986 466777777665443322 22 345899999999996443333455578999999999
Q ss_pred hhhhccC--chHHHHHH---HHhCCCCceEEEEeccCchhHHHHHHhhc-cCCeeeeeccchhhhcccceeeEEEecchh
Q 047890 613 DRMLDMG--FEPQIRKI---VNEMPPHRQTLMYTATWPKDVRKIASDLL-VNPVQVNIGNVDELAANKAITQHVEVVPQM 686 (1134)
Q Consensus 613 Hrll~~g--f~~~i~~I---L~~l~~~~qiLllSATl~~~v~~l~~~~l-~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ 686 (1134)
|++.+++ |.+.+..+ +..+ +..++|++|||++..+...+...+ .....+.+...+ ..++ .+.+....
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~----r~~l--~~~v~~~~ 221 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD----RPNI--RYMLMEKF 221 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC----CTTE--EEEEEECS
T ss_pred cccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC----CCce--EEEEEeCC
Confidence 9999887 66665543 3444 457899999999887765443333 222222222221 1122 22333334
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceecc
Q 047890 687 EKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765 (1134)
Q Consensus 687 ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GL 765 (1134)
.+...|..+++.. .+.++||||+|++.++.+++.|.+ ++.+..+|++++.++|.++++.|++++++|||||+++++||
T Consensus 222 ~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~Gi 300 (523)
T 1oyw_A 222 KPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300 (523)
T ss_dssp SHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred CHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCC
Confidence 4555566666543 567999999999999999999954 68899999999999999999999999999999999999999
Q ss_pred ccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHH
Q 047890 766 DIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVK 818 (1134)
Q Consensus 766 DIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k 818 (1134)
|++++++||++++|++.+.|+||+||+||.|+++.|++|+...|......+++
T Consensus 301 D~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999887766555544
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.1e-43 Score=408.75 Aligned_cols=317 Identities=23% Similarity=0.334 Sum_probs=253.5
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.+| +|+++|.++|+.++.++++|+++|||+|||++|+++++..+. .++++|||+||++|+.|+++++++++.
T Consensus 18 ~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~~~~~~~ 89 (414)
T 3oiy_A 18 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-------KGKKSALVFPTVTLVKQTLERLQKLAD 89 (414)
T ss_dssp HSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-------TTCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred cCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-------CCCEEEEEECCHHHHHHHHHHHHHHcc
Confidence 356 799999999999999999999999999999999888777652 567999999999999999999999987
Q ss_pred CCCCceEEecCCCCC---chhHHhhcCC-CcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc-----------cC
Q 047890 555 SSRLSCTCLYGGAPK---GPQLRELDQG-ADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD-----------MG 619 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~---~~~l~~l~~~-~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~-----------~g 619 (1134)
.++.+..++|+... ......+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.. .+
T Consensus 90 -~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~ 166 (414)
T 3oiy_A 90 -EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 166 (414)
T ss_dssp -SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTT
T ss_pred -CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcC
Confidence 78899999999876 4445555555 89999999999888764 6677999999999987653 67
Q ss_pred chHH-HHHHHHhCC-----------CCceEEEEecc-CchhHH-HHHHhhccCCeeeeeccchhhhcccceeeEEEecch
Q 047890 620 FEPQ-IRKIVNEMP-----------PHRQTLMYTAT-WPKDVR-KIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685 (1134)
Q Consensus 620 f~~~-i~~IL~~l~-----------~~~qiLllSAT-l~~~v~-~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~ 685 (1134)
|... +..++..++ ...++|++||| ++..+. .+...++. +.+.. .......+.+.+..+
T Consensus 167 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~i~~~~~~~-- 238 (414)
T 3oiy_A 167 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR--LVSVARNITHVRISS-- 238 (414)
T ss_dssp CCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC--CCCCCCSEEEEEESS--
T ss_pred CcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc--cccccccchheeecc--
Confidence 7777 777887765 78899999999 665554 33333322 11111 111223344444333
Q ss_pred hHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEE-EecCCCChhHHHHHHHHHhcCCCCeeee----cc
Q 047890 686 MEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAI-AIHGDKSQGERDWVLNQFRSGKSPILVA----TD 759 (1134)
Q Consensus 686 ~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~-~LhG~ms~~eR~~il~~FrsGe~~VLVA----Td 759 (1134)
++...|..+++. .+.++||||++++.++.|++.|.+ ++.+. .+|+. +|. ++.|++|+++|||| |+
T Consensus 239 -~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 239 -RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYG 309 (414)
T ss_dssp -CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTC
T ss_pred -CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCc
Confidence 345556666666 348999999999999999999964 67787 88884 444 99999999999999 99
Q ss_pred cceeccccCc-ceEEEeecCC--CChhhHHHhhhccCcCC----CcceeEEEecccchHHHHHHHHHHH
Q 047890 760 VAARGLDIKD-IRVVINYDFP--NGVEDYVHRIGRTGRAG----ATGVAHTFFSEQDSKYAADLVKVLE 821 (1134)
Q Consensus 760 vl~~GLDIp~-v~~VI~~d~P--~s~~~yiQRiGRagR~G----qkG~~ii~~~~~d~~~~~~l~k~L~ 821 (1134)
++++|||+++ |++||+||+| .+...|+||+||+||.| ++|.|++|+ .+...+..+.+.+.
T Consensus 310 ~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 310 KLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp CCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred hhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999999999 9999999999 99999999999999988 589999988 56666666666666
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.8e-42 Score=415.81 Aligned_cols=332 Identities=21% Similarity=0.257 Sum_probs=201.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
+..+||++|.++|+.++.++++|++++||+|||++|+++++..+..... ..+.++||||||++|+.||++++++++..
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 3457999999999999999999999999999999999999888764321 22678999999999999999999999887
Q ss_pred CCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc-CCCCeEEEEEcchhhhhccCchHHH-HHHHHh---
Q 047890 556 SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI-DFGQVSLLVLDEADRMLDMGFEPQI-RKIVNE--- 630 (1134)
Q Consensus 556 ~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l-~l~~l~lVVIDEAHrll~~gf~~~i-~~IL~~--- 630 (1134)
.++.+..++|+.........+...++|+|+||++|.+++....+ .+.++++|||||||++.+++....+ ..++..
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 78899999998876666666666799999999999999988777 7899999999999999887643333 222222
Q ss_pred -CCCCceEEEEeccCchh-----------HHHHHHhhccCCeeeeeccchhhhccc-ceeeEEEec--------------
Q 047890 631 -MPPHRQTLMYTATWPKD-----------VRKIASDLLVNPVQVNIGNVDELAANK-AITQHVEVV-------------- 683 (1134)
Q Consensus 631 -l~~~~qiLllSATl~~~-----------v~~l~~~~l~~~~~i~i~~~d~l~~~~-~i~~~~~~v-------------- 683 (1134)
..+..++|+||||+... +.++...+....+.........+.... ........+
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 13567899999998421 111111111010000000000000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 047890 684 -------------------------------------------------------------------------------- 683 (1134)
Q Consensus 684 -------------------------------------------------------------------------------- 683 (1134)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -----------------------------------------------chhHHHHHHHHHHHHH---hcCCEEEEEeCcHH
Q 047890 684 -----------------------------------------------PQMEKERRLQQILRAQ---ERGSRVIIFCSTKR 713 (1134)
Q Consensus 684 -----------------------------------------------~~~ek~~~L~~llk~~---~~~~kvLVF~nT~~ 713 (1134)
....|...|..++... ..+.++||||++++
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 0122344455555433 45689999999999
Q ss_pred HHHHHHHHhcCC-------------CcEEEecCCCChhHHHHHHHHHhc-CCCCeeeecccceeccccCcceEEEeecCC
Q 047890 714 LCDQLARSIGRN-------------FGAIAIHGDKSQGERDWVLNQFRS-GKSPILVATDVAARGLDIKDIRVVINYDFP 779 (1134)
Q Consensus 714 ~ae~La~~L~~~-------------~~v~~LhG~ms~~eR~~il~~Frs-Ge~~VLVATdvl~~GLDIp~v~~VI~~d~P 779 (1134)
.++.|++.|.+. .....+|++|+.++|.+++++|++ |+++|||||+++++|||+++|++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999653 234566888999999999999999 999999999999999999999999999999
Q ss_pred CChhhHHHhhhccCcCCCcceeEEEecccchH
Q 047890 780 NGVEDYVHRIGRTGRAGATGVAHTFFSEQDSK 811 (1134)
Q Consensus 780 ~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~ 811 (1134)
|++..|+||+|| ||. +.|.|++|+...+..
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999 999 889999999876543
No 20
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2e-41 Score=407.38 Aligned_cols=331 Identities=22% Similarity=0.282 Sum_probs=226.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
+|+++|.++|+.++.++++|++++||+|||++|+++++..+..... ..+.++||||||++|+.||++++++++...++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--GQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 6999999999999999999999999999999999999988764321 23678999999999999999999999887789
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc-CCCCeEEEEEcchhhhhccCc-hHHHHHHHHhC-----
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI-DFGQVSLLVLDEADRMLDMGF-EPQIRKIVNEM----- 631 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l-~l~~l~lVVIDEAHrll~~gf-~~~i~~IL~~l----- 631 (1134)
.+..++|+.........+..+++|+|+||++|.+++....+ .+.++++|||||||++.+.+. ...+..++...
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 99999999876666566666799999999999999987777 788999999999999987642 23233333322
Q ss_pred CCCceEEEEeccCchh----H-------HHHHHhhccCCeeeeeccchhhhccc-ceeeEEEe-----------------
Q 047890 632 PPHRQTLMYTATWPKD----V-------RKIASDLLVNPVQVNIGNVDELAANK-AITQHVEV----------------- 682 (1134)
Q Consensus 632 ~~~~qiLllSATl~~~----v-------~~l~~~~l~~~~~i~i~~~d~l~~~~-~i~~~~~~----------------- 682 (1134)
....++|+||||+... + ..+...+....+.........+.... ........
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 2456899999998432 1 11111111000000000000000000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 047890 683 -------------------------------------------------------------------------------- 682 (1134)
Q Consensus 683 -------------------------------------------------------------------------------- 682 (1134)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred ---------------------------------------------cchhHHHHHHHHHHHHH---hcCCEEEEEeCcHHH
Q 047890 683 ---------------------------------------------VPQMEKERRLQQILRAQ---ERGSRVIIFCSTKRL 714 (1134)
Q Consensus 683 ---------------------------------------------v~~~ek~~~L~~llk~~---~~~~kvLVF~nT~~~ 714 (1134)
.....|...|..++... ....++||||+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 00123444555555443 245899999999999
Q ss_pred HHHHHHHhcCC-----C--------cEEEecCCCChhHHHHHHHHHhc-CCCCeeeecccceeccccCcceEEEeecCCC
Q 047890 715 CDQLARSIGRN-----F--------GAIAIHGDKSQGERDWVLNQFRS-GKSPILVATDVAARGLDIKDIRVVINYDFPN 780 (1134)
Q Consensus 715 ae~La~~L~~~-----~--------~v~~LhG~ms~~eR~~il~~Frs-Ge~~VLVATdvl~~GLDIp~v~~VI~~d~P~ 780 (1134)
++.|++.|... + ....+|++|+.++|.+++++|++ |+++|||||+++++|||+++|++||+||+||
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 99999999642 2 34455669999999999999999 9999999999999999999999999999999
Q ss_pred ChhhHHHhhhccCcCCCcceeEEEecccchHHH
Q 047890 781 GVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYA 813 (1134)
Q Consensus 781 s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~ 813 (1134)
++..|+||+|| ||. +.|.|++|+...+....
T Consensus 482 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 482 NVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp SCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred CHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 99999999999 999 89999999987765544
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.3e-40 Score=414.05 Aligned_cols=339 Identities=21% Similarity=0.278 Sum_probs=219.9
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHH
Q 047890 470 ASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEA 549 (1134)
Q Consensus 470 ~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el 549 (1134)
..+...||.+|+++|.++|+.++.++++|++++||+|||++|+++++..+..... ....++|||+||++|+.||.+++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--TCCCCEEEECSSHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--CCCCeEEEEECCHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999987765321 13368999999999999999999
Q ss_pred HHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc-CCCCeEEEEEcchhhhhccC-chHHHHHH
Q 047890 550 NKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI-DFGQVSLLVLDEADRMLDMG-FEPQIRKI 627 (1134)
Q Consensus 550 ~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l-~l~~l~lVVIDEAHrll~~g-f~~~i~~I 627 (1134)
++++...++.+..++|+.........+...++|+|+||++|.+.+....+ .+.++++|||||||++.+.. +...+..+
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 99988778899999998876666666666799999999999999987766 78899999999999987654 22222222
Q ss_pred HHh-----CCCCceEEEEeccCc-------hh-HHHHHHhh---------------------ccCCeeeee--cc-----
Q 047890 628 VNE-----MPPHRQTLMYTATWP-------KD-VRKIASDL---------------------LVNPVQVNI--GN----- 666 (1134)
Q Consensus 628 L~~-----l~~~~qiLllSATl~-------~~-v~~l~~~~---------------------l~~~~~i~i--~~----- 666 (1134)
+.. .....++|+||||+. .+ +..+...+ ...+..... ..
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 222 245678999999986 11 12221111 001100000 00
Q ss_pred -----------chhhhc---c-----------------------------------------------------------
Q 047890 667 -----------VDELAA---N----------------------------------------------------------- 673 (1134)
Q Consensus 667 -----------~d~l~~---~----------------------------------------------------------- 673 (1134)
...+.. .
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence 000000 0
Q ss_pred -----------------------------cceeeEEE----------------ecchhHHHHHHHHHHHHH---hcCCEE
Q 047890 674 -----------------------------KAITQHVE----------------VVPQMEKERRLQQILRAQ---ERGSRV 705 (1134)
Q Consensus 674 -----------------------------~~i~~~~~----------------~v~~~ek~~~L~~llk~~---~~~~kv 705 (1134)
..+.+.+. ......|...|..+++.. ..+.++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 00000000 001234556666666654 246799
Q ss_pred EEEeCcHHHHHHHHHHhcCC-----CcEEEe--------cCCCChhHHHHHHHHHhc-CCCCeeeecccceeccccCcce
Q 047890 706 IIFCSTKRLCDQLARSIGRN-----FGAIAI--------HGDKSQGERDWVLNQFRS-GKSPILVATDVAARGLDIKDIR 771 (1134)
Q Consensus 706 LVF~nT~~~ae~La~~L~~~-----~~v~~L--------hG~ms~~eR~~il~~Frs-Ge~~VLVATdvl~~GLDIp~v~ 771 (1134)
||||+++..++.|++.|... +.+..+ |++|+.++|.+++++|++ |+++|||||+++++||||++|+
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 99999999999999999653 677777 569999999999999998 9999999999999999999999
Q ss_pred EEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHH
Q 047890 772 VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKY 812 (1134)
Q Consensus 772 ~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~ 812 (1134)
+||+||+|++.+.|+||+|| ||. +.|.|++++...+...
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 99999999999999999999 998 7899999988766543
No 22
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.3e-39 Score=379.56 Aligned_cols=323 Identities=23% Similarity=0.314 Sum_probs=245.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|+++|.++++.++.+ ++|++++||+|||++++++++..+.. .+.++|||||+++|+.||.+++.+++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK------YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH------SCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 5999999999999999 99999999999999999998887651 4568999999999999999999999754445
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEE
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTL 638 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiL 638 (1134)
.+..++|+...... ..+...++|+|+||+.|.+.+....+.+.++++|||||||++.+......+...+.......++|
T Consensus 82 ~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 82 KIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp GEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred heEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 77888877654433 33334589999999999999888788889999999999999986654555555565566778899
Q ss_pred EEeccCchh---HHHHHHhhccCCeeeeeccchhhh---cccceee----------------------------------
Q 047890 639 MYTATWPKD---VRKIASDLLVNPVQVNIGNVDELA---ANKAITQ---------------------------------- 678 (1134)
Q Consensus 639 llSATl~~~---v~~l~~~~l~~~~~i~i~~~d~l~---~~~~i~~---------------------------------- 678 (1134)
+||||+... +.+++..+......+.......+. ....+..
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998643 333333322111100000000000 0000000
Q ss_pred -----------------------------------------------------------EE-------------------
Q 047890 679 -----------------------------------------------------------HV------------------- 680 (1134)
Q Consensus 679 -----------------------------------------------------------~~------------------- 680 (1134)
++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence 00
Q ss_pred ----------------EecchhHHHHHHHHHHHHH---hcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecC-------
Q 047890 681 ----------------EVVPQMEKERRLQQILRAQ---ERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHG------- 733 (1134)
Q Consensus 681 ----------------~~v~~~ek~~~L~~llk~~---~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG------- 733 (1134)
.......|...|.++++.. ..+.++||||+++..++.|++.|.. ++.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 0001223445556666554 4578999999999999999999965 688999999
Q ss_pred -CCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 734 -DKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 734 -~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
+++.++|.+++++|++|+++|||||+++++|||++++++||++|+||++..|+||+||++|.|+ |.+++|+...+.
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999987654
No 23
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.4e-40 Score=416.42 Aligned_cols=333 Identities=20% Similarity=0.246 Sum_probs=207.3
Q ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 474 SAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 474 ~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
..|+.+|+++|.++|+.++.++++|++++||+|||++|+++++..+..... ..+.++||||||++|+.||++++++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--cCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 457889999999999999999999999999999999999999988774321 236789999999999999999999998
Q ss_pred cCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc-CCCCeEEEEEcchhhhhccCchHH-HHHHHHh-
Q 047890 554 RSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI-DFGQVSLLVLDEADRMLDMGFEPQ-IRKIVNE- 630 (1134)
Q Consensus 554 ~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l-~l~~l~lVVIDEAHrll~~gf~~~-i~~IL~~- 630 (1134)
...++.+..++|+.........+...++|||+||++|.+++....+ .+.++++|||||||++.+...... +..++..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 7778899999999877666666667899999999999999987777 788999999999999887653222 2233222
Q ss_pred ---CCCCceEEEEeccCch-----------hHHHHHHhh------------------ccCCeeeeeccc----hhhh---
Q 047890 631 ---MPPHRQTLMYTATWPK-----------DVRKIASDL------------------LVNPVQVNIGNV----DELA--- 671 (1134)
Q Consensus 631 ---l~~~~qiLllSATl~~-----------~v~~l~~~~------------------l~~~~~i~i~~~----d~l~--- 671 (1134)
.....++|+||||+.. .+..+...+ +..+....+... +...
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 1456789999999842 112211111 111110000000 0000
Q ss_pred ---------cccc------eeeE--EE---------e-------------------------------------------
Q 047890 672 ---------ANKA------ITQH--VE---------V------------------------------------------- 682 (1134)
Q Consensus 672 ---------~~~~------i~~~--~~---------~------------------------------------------- 682 (1134)
.... +... .. +
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0000 0000 00 0
Q ss_pred ------------------------------------------------cchhHHHHHHHHHHHHH---hcCCEEEEEeCc
Q 047890 683 ------------------------------------------------VPQMEKERRLQQILRAQ---ERGSRVIIFCST 711 (1134)
Q Consensus 683 ------------------------------------------------v~~~ek~~~L~~llk~~---~~~~kvLVF~nT 711 (1134)
.....|...|..++... ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 00122334445555432 456899999999
Q ss_pred HHHHHHHHHHhcC-------------CCcEEEecCCCChhHHHHHHHHHhc-CCCCeeeecccceeccccCcceEEEeec
Q 047890 712 KRLCDQLARSIGR-------------NFGAIAIHGDKSQGERDWVLNQFRS-GKSPILVATDVAARGLDIKDIRVVINYD 777 (1134)
Q Consensus 712 ~~~ae~La~~L~~-------------~~~v~~LhG~ms~~eR~~il~~Frs-Ge~~VLVATdvl~~GLDIp~v~~VI~~d 777 (1134)
+..++.|++.|.+ +..+..+|++|+.++|.+++++|++ |+++|||||+++++||||++|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 9999999999964 2345667899999999999999999 9999999999999999999999999999
Q ss_pred CCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 778 FPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 778 ~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
+||++..|+||+|| ||. +.|.|++|+...+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999 999 89999999987654
No 24
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-38 Score=397.83 Aligned_cols=338 Identities=21% Similarity=0.292 Sum_probs=257.4
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPI-ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~-il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
+.++.+...+.+.+...||.+|+++|.++++. +++++++|+++|||||||+++.++++..+.. .+.++|||+|
T Consensus 10 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~il~i~P 83 (715)
T 2va8_A 10 IEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK------NGGKAIYVTP 83 (715)
T ss_dssp GGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH------SCSEEEEECS
T ss_pred HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH------CCCeEEEEeC
Confidence 55566777888889999999999999999999 7889999999999999999999998876653 3569999999
Q ss_pred cHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 538 TRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
+++|+.|++++++++.. .++.+..++|+....... + ..++|+|+||++|..++......+.++++|||||||++.+
T Consensus 84 ~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~ 159 (715)
T 2va8_A 84 LRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND 159 (715)
T ss_dssp CHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC
T ss_pred cHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC
Confidence 99999999999965543 478888888876554432 2 3689999999999998887666688999999999999988
Q ss_pred cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCe-------eeeeccchhhhcccceeeEEEecch-----
Q 047890 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPV-------QVNIGNVDELAANKAITQHVEVVPQ----- 685 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~-------~i~i~~~d~l~~~~~i~~~~~~v~~----- 685 (1134)
..+...+..++..++ ..++|+||||++. ..++...+....+ .+....... ........+.....
T Consensus 160 ~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~~~~~~~~r~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~ 235 (715)
T 2va8_A 160 PERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGAEPVATNWRPVPLIEGVIYP--ERKKKEYNVIFKDNTTKKV 235 (715)
T ss_dssp TTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTCEEEECCCCSSCEEEEEEEE--CSSTTEEEEEETTSCEEEE
T ss_pred cccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCCCccCCCCCCCCceEEEEec--CCcccceeeecCcchhhhc
Confidence 788888888887775 7889999999864 4555544422111 000000000 00000001111110
Q ss_pred hHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCC-------------------------------------CcE
Q 047890 686 MEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN-------------------------------------FGA 728 (1134)
Q Consensus 686 ~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~-------------------------------------~~v 728 (1134)
......+..+.+.+..++++||||++++.++.+++.|.+. +.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 236 HGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp ESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred ccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCE
Confidence 0001223334444456789999999999999999888532 248
Q ss_pred EEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe----ec-------CCCChhhHHHhhhccCcCC-
Q 047890 729 IAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN----YD-------FPNGVEDYVHRIGRTGRAG- 796 (1134)
Q Consensus 729 ~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~----~d-------~P~s~~~yiQRiGRagR~G- 796 (1134)
..+|++++.++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.|
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~ 395 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGF 395 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTT
T ss_pred EEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 89999999999999999999999999999999999999999999999 99 7899999999999999988
Q ss_pred -CcceeEEEecccch
Q 047890 797 -ATGVAHTFFSEQDS 810 (1134)
Q Consensus 797 -qkG~~ii~~~~~d~ 810 (1134)
..|.|++++...+.
T Consensus 396 ~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 396 DQIGESIVVVRDKED 410 (715)
T ss_dssp CSCEEEEEECSCGGG
T ss_pred CCCceEEEEeCCchH
Confidence 47899999877653
No 25
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.8e-39 Score=403.45 Aligned_cols=334 Identities=20% Similarity=0.224 Sum_probs=262.0
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPI-ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~-il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
+.++.+...+.+.+...||.+|+++|.++++. +++++++|+++|||||||++|.++++..+.. .+.++|||+|
T Consensus 3 f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~~l~i~P 76 (720)
T 2zj8_A 3 VDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT------QGGKAVYIVP 76 (720)
T ss_dssp GGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH------HCSEEEEECS
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh------CCCEEEEEcC
Confidence 45566777888899999999999999999998 8899999999999999999999998876653 2469999999
Q ss_pred cHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 538 TRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
+++|+.|++++++++.. .++.+..++|+....... ...++|+|+||++|..++......+.++++|||||||++.+
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~ 152 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGS 152 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCC
Confidence 99999999999976654 378888888876544321 23589999999999998887666688999999999999998
Q ss_pred cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhccc--ceeeEEEecc-----hhHHHH
Q 047890 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANK--AITQHVEVVP-----QMEKER 690 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~--~i~~~~~~v~-----~~ek~~ 690 (1134)
..+...+..++..+....++|+||||++. ..++...+.... +... ........ .....+.... ...+
T Consensus 153 ~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~-~rp~~l~~~~~~~~~~~~~~~~~~~~~~~-- 226 (720)
T 2zj8_A 153 RDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAEL--IVSD-WRPVKLRRGVFYQGFVTWEDGSIDRFSSW-- 226 (720)
T ss_dssp TTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEE--EECC-CCSSEEEEEEEETTEEEETTSCEEECSST--
T ss_pred CcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcc--cCCC-CCCCcceEEEEeCCeeeccccchhhhhHH--
Confidence 88889999988888778899999999874 455554432211 1000 00000000 0000111111 1112
Q ss_pred HHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCC----------------------------------CcEEEecCCCC
Q 047890 691 RLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRN----------------------------------FGAIAIHGDKS 736 (1134)
Q Consensus 691 ~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~----------------------------------~~v~~LhG~ms 736 (1134)
+..+.+.+..++++||||++++.++.++..|.+. ..+..+|++++
T Consensus 227 -~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~ 305 (720)
T 2zj8_A 227 -EELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG 305 (720)
T ss_dssp -THHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC
T ss_pred -HHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC
Confidence 2223333456789999999999999998887531 24889999999
Q ss_pred hhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe----ec----CCCChhhHHHhhhccCcCC--CcceeEEEec
Q 047890 737 QGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN----YD----FPNGVEDYVHRIGRTGRAG--ATGVAHTFFS 806 (1134)
Q Consensus 737 ~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~----~d----~P~s~~~yiQRiGRagR~G--qkG~~ii~~~ 806 (1134)
.++|..+++.|++|+++|||||+++++|||++++++||+ || .|.+..+|+||+||+||.| ..|.|++++.
T Consensus 306 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 306 RDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 999999999999999999999999999999999999998 76 5889999999999999988 5789999988
Q ss_pred ccc
Q 047890 807 EQD 809 (1134)
Q Consensus 807 ~~d 809 (1134)
..+
T Consensus 386 ~~~ 388 (720)
T 2zj8_A 386 SDD 388 (720)
T ss_dssp SSC
T ss_pred Ccc
Confidence 776
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-39 Score=404.54 Aligned_cols=333 Identities=23% Similarity=0.260 Sum_probs=252.6
Q ss_pred cchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHH
Q 047890 464 ATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 464 v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~ 543 (1134)
+...+.+.+...||.+|+++|.++++.+++++++|+++|||||||++|.++++..+. .+.++|||+|+++|+.
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-------~~~~~l~i~P~r~La~ 82 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-------KGGKSLYVVPLRALAG 82 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-------TTCCEEEEESSHHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-------hCCcEEEEeCcHHHHH
Confidence 455667888889999999999999999999999999999999999999999887765 2568999999999999
Q ss_pred HHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHH
Q 047890 544 QIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQ 623 (1134)
Q Consensus 544 Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~ 623 (1134)
|++++++++. ..++.+..++|+...... ....++|+|+||++|..++......+.++++|||||||++.++++...
T Consensus 83 q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~ 158 (702)
T 2p6r_A 83 EKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGAT 158 (702)
T ss_dssp HHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHH
T ss_pred HHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccH
Confidence 9999997654 347888888887654432 123689999999999999887666688999999999999998888877
Q ss_pred HHHHHHhC---CCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhH----HHHHHHHHH
Q 047890 624 IRKIVNEM---PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQME----KERRLQQIL 696 (1134)
Q Consensus 624 i~~IL~~l---~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~e----k~~~L~~ll 696 (1134)
+..++..+ .+..++|+||||++. ..++...+....+....... .+.........+....... ....+..+.
T Consensus 159 ~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~~~~~~r~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (702)
T 2p6r_A 159 LEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDADYYVSDWRPV-PLVEGVLCEGTLELFDGAFSTSRRVKFEELVE 236 (702)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTCEEEECCCCSS-CEEEEEECSSEEEEEETTEEEEEECCHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCCCcccCCCCCc-cceEEEeeCCeeeccCcchhhhhhhhHHHHHH
Confidence 77776655 578899999999874 55555544321110000000 0000000000011111000 000222333
Q ss_pred HHHhcCCEEEEEeCcHHHHHHHHHHhcCC-------------------------------CcEEEecCCCChhHHHHHHH
Q 047890 697 RAQERGSRVIIFCSTKRLCDQLARSIGRN-------------------------------FGAIAIHGDKSQGERDWVLN 745 (1134)
Q Consensus 697 k~~~~~~kvLVF~nT~~~ae~La~~L~~~-------------------------------~~v~~LhG~ms~~eR~~il~ 745 (1134)
+.+..++++||||++++.++.+++.|.+. +.+..+|++++.++|..+++
T Consensus 237 ~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 316 (702)
T 2p6r_A 237 ECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVED 316 (702)
T ss_dssp HHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHH
T ss_pred HHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHH
Confidence 33456789999999999999998887431 35788999999999999999
Q ss_pred HHhcCCCCeeeecccceeccccCcceEEEe----ec---CCCChhhHHHhhhccCcCC--CcceeEEEecccc
Q 047890 746 QFRSGKSPILVATDVAARGLDIKDIRVVIN----YD---FPNGVEDYVHRIGRTGRAG--ATGVAHTFFSEQD 809 (1134)
Q Consensus 746 ~FrsGe~~VLVATdvl~~GLDIp~v~~VI~----~d---~P~s~~~yiQRiGRagR~G--qkG~~ii~~~~~d 809 (1134)
.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.| ..|.|++++...+
T Consensus 317 ~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 317 AFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999999999999999999999 66 6889999999999999988 5789999988776
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-39 Score=417.11 Aligned_cols=315 Identities=20% Similarity=0.243 Sum_probs=246.3
Q ss_pred HHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 472 MHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 472 l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
+....+..|+++|.+||+.++.++++|++|+||||||++|+++++..+. .+.++|||+||++|+.|+++.|.+
T Consensus 177 ~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------~g~rvlvl~PtraLa~Q~~~~l~~ 249 (1108)
T 3l9o_A 177 EARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------NKQRVIYTSPIKALSNQKYRELLA 249 (1108)
T ss_dssp CSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-------TTCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 3445566799999999999999999999999999999999999998875 467999999999999999999999
Q ss_pred hccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhC
Q 047890 552 FGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM 631 (1134)
Q Consensus 552 l~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l 631 (1134)
++. .+.+++|+... ...++|||+||++|.+++......+.++++|||||||++.++++...+..++..+
T Consensus 250 ~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l 318 (1108)
T 3l9o_A 250 EFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 318 (1108)
T ss_dssp HTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS
T ss_pred HhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhc
Confidence 865 46667777643 3458999999999999998887778899999999999999999999999999999
Q ss_pred CCCceEEEEeccCchh--HHHHHHhhccCCeeeeeccchhhhcccceeeEE---------Eecchh--------------
Q 047890 632 PPHRQTLMYTATWPKD--VRKIASDLLVNPVQVNIGNVDELAANKAITQHV---------EVVPQM-------------- 686 (1134)
Q Consensus 632 ~~~~qiLllSATl~~~--v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~---------~~v~~~-------------- 686 (1134)
+...++|+||||++.. +.+++..+...+..+......... +..++ .++...
T Consensus 319 ~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p----l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~ 394 (1108)
T 3l9o_A 319 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP----LQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 394 (1108)
T ss_dssp CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC----EEEEEEETTSSCCEEEEETTTEECHHHHHHHHTT
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc----ceEEEeecCCcceeeeeccccchhhhhHHHHHHH
Confidence 9999999999998765 335555544444333221111100 00100 000000
Q ss_pred --------------------------HH---HHHHHHHHHHH--hcCCEEEEEeCcHHHHHHHHHHhcC-CC--------
Q 047890 687 --------------------------EK---ERRLQQILRAQ--ERGSRVIIFCSTKRLCDQLARSIGR-NF-------- 726 (1134)
Q Consensus 687 --------------------------ek---~~~L~~llk~~--~~~~kvLVF~nT~~~ae~La~~L~~-~~-------- 726 (1134)
.+ ...+..+++.+ ....++||||++++.|+.++..|.. ++
T Consensus 395 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~ 474 (1108)
T 3l9o_A 395 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEA 474 (1108)
T ss_dssp C-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----C
T ss_pred HHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHH
Confidence 00 22233333332 2346899999999999999998854 11
Q ss_pred -------------------------------cEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe
Q 047890 727 -------------------------------GAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN 775 (1134)
Q Consensus 727 -------------------------------~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~ 775 (1134)
.+..+|++|+..+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 475 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~ 554 (1108)
T 3l9o_A 475 LTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT 554 (1108)
T ss_dssp HHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEES
T ss_pred HHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEe
Confidence 1789999999999999999999999999999999999999999999998
Q ss_pred ecCCC--------ChhhHHHhhhccCcCC--CcceeEEEeccc
Q 047890 776 YDFPN--------GVEDYVHRIGRTGRAG--ATGVAHTFFSEQ 808 (1134)
Q Consensus 776 ~d~P~--------s~~~yiQRiGRagR~G--qkG~~ii~~~~~ 808 (1134)
++.++ +..+|+||+||+||.| ..|.|++++.+.
T Consensus 555 ~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 555 SVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred cCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 77644 5667999999999999 678888888765
No 28
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.8e-39 Score=403.26 Aligned_cols=344 Identities=20% Similarity=0.230 Sum_probs=259.6
Q ss_pred HHHHH-HHcCCCCCCHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHH
Q 047890 468 RVASM-HSAGFSSPTPIQAQTWPIALQG------RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRE 540 (1134)
Q Consensus 468 ~l~~l-~~~Gf~~prpiQ~eaI~~il~g------rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTre 540 (1134)
.+..+ ...+| +||++|+++|+.++.+ .++|++++||||||++|+++++..+. .+.++|||+||++
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~-------~g~qvlvlaPtr~ 428 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE-------AGFQTAFMVPTSI 428 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH-------HTSCEEEECSCHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeCcHH
Confidence 34443 56788 8999999999999876 58999999999999999999998775 3568999999999
Q ss_pred HHHHHHHHHHHhccCCCCceEEecCCCCCchh---HHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 541 LATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ---LRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 541 La~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~---l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
|+.|+++.+.+++...++.+.+++|+...... +..+.. .++|||+|++.|.+ .+.+.++++|||||+|++.
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhh
Confidence 99999999999988778999999998765543 233444 48999999987754 4568899999999999963
Q ss_pred ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcc-cceeeEEEecchhHHHHHHHHH
Q 047890 617 DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAAN-KAITQHVEVVPQMEKERRLQQI 695 (1134)
Q Consensus 617 ~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~-~~i~~~~~~v~~~ek~~~L~~l 695 (1134)
.. ....+.......++|+||||+..+...+.. +.+.....+ ++.... ..+ ...++........+..+
T Consensus 504 ~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i---~~~p~~r~~i--~~~~~~~~~~~~l~~~i 571 (780)
T 1gm5_A 504 VK-----QREALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVI---DEMPPGRKEV--QTMLVPMDRVNEVYEFV 571 (780)
T ss_dssp ---------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEE---CCCCSSCCCC--EECCCCSSTHHHHHHHH
T ss_pred HH-----HHHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeee---eccCCCCcce--EEEEeccchHHHHHHHH
Confidence 21 122233334567899999997665443332 222111111 111111 111 11223333344455555
Q ss_pred HHHHhcCCEEEEEeCcHH--------HHHHHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeeccccee
Q 047890 696 LRAQERGSRVIIFCSTKR--------LCDQLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAAR 763 (1134)
Q Consensus 696 lk~~~~~~kvLVF~nT~~--------~ae~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~ 763 (1134)
.+.+..+.+++|||++.+ .++.+++.|.+ ++.+..+||+|+.++|++++++|++|+++|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 566677889999999654 46778888866 457899999999999999999999999999999999999
Q ss_pred ccccCcceEEEeecCCC-ChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHHHHHHHhh
Q 047890 764 GLDIKDIRVVINYDFPN-GVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPEVRDMALR 837 (1134)
Q Consensus 764 GLDIp~v~~VI~~d~P~-s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~l~dla~r 837 (1134)
|||+|++++||+++.|. +...|+||+||+||.|++|.|++++. .+.......++.++...+.+.....++..|
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~-~~~~~~~~rl~~l~~~~dgf~iae~dL~~R 725 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG-DVGEEAMERLRFFTLNTDGFKIAEYDLKTR 725 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCC-SCCHHHHHHHHHHHTCCCSHHHHHHHHHSS
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEEC-CCChHHHHHHHHHHhhhccchhhHhhHhcc
Confidence 99999999999999996 78899999999999999999999988 334455566777777777777777888877
No 29
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.5e-39 Score=401.51 Aligned_cols=324 Identities=24% Similarity=0.310 Sum_probs=224.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHH-HHHHHHhccCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQI-QDEANKFGRSSR 557 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~-~~el~kl~~~~~ 557 (1134)
+|+++|.++|+.++.++++||+++||+|||++|+++++.++..... .....++|||+|+++|+.|| .++|++++.. .
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 5999999999999999999999999999999999999987765322 11236899999999999999 9999998765 4
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHH------HhcccCCCCeEEEEEcchhhhhccC-chHHHHHHHHh
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL------EMKKIDFGQVSLLVLDEADRMLDMG-FEPQIRKIVNE 630 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL------~~~~l~l~~l~lVVIDEAHrll~~g-f~~~i~~IL~~ 630 (1134)
+.+..++|+.........+...++|||+||++|.+.+ ....+.+.++++|||||||++.... +...+..++..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 8888999988776666666677999999999999988 4555778899999999999986543 33333323222
Q ss_pred C-------------CCCceEEEEeccCchh-----------HHHHHHhhccCCeeeeeccchhhhcccce-eeEEEecc-
Q 047890 631 M-------------PPHRQTLMYTATWPKD-----------VRKIASDLLVNPVQVNIGNVDELAANKAI-TQHVEVVP- 684 (1134)
Q Consensus 631 l-------------~~~~qiLllSATl~~~-----------v~~l~~~~l~~~~~i~i~~~d~l~~~~~i-~~~~~~v~- 684 (1134)
. .+..++|+||||+... +.++...+....+.........+...... ...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 1 1556899999998752 12222221110010000000000000000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 047890 685 -------------------------------------------------------------------------------- 684 (1134)
Q Consensus 685 -------------------------------------------------------------------------------- 684 (1134)
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------hhHHHHHHHHHHHH-Hh--c-CCEEE
Q 047890 685 ------------------------------------------------------QMEKERRLQQILRA-QE--R-GSRVI 706 (1134)
Q Consensus 685 ------------------------------------------------------~~ek~~~L~~llk~-~~--~-~~kvL 706 (1134)
...|...|..++.. .. . +.++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 00001112222222 11 1 68999
Q ss_pred EEeCcHHHHHHHHHHhcC-------CCcEEEecCC--------CChhHHHHHHHHHhcCCCCeeeecccceeccccCcce
Q 047890 707 IFCSTKRLCDQLARSIGR-------NFGAIAIHGD--------KSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 771 (1134)
Q Consensus 707 VF~nT~~~ae~La~~L~~-------~~~v~~LhG~--------ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~ 771 (1134)
|||++++.++.|++.|.. ++.+..+||+ |+..+|.+++++|++|+++|||||+++++|||+++|+
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 999999999999999976 4889999999 9999999999999999999999999999999999999
Q ss_pred EEEeecCCCChhhHHHhhhccCcCCCcceeEEEecc
Q 047890 772 VVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSE 807 (1134)
Q Consensus 772 ~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~ 807 (1134)
+||+||+|+++..|+||+||++|.| .+++++..
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 9999999999999999999976654 44444433
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1e-38 Score=409.46 Aligned_cols=332 Identities=20% Similarity=0.255 Sum_probs=205.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.++.+|+++|.++|+.++.++++|++++||+|||++|+++++..+..... ..+.++|||+||++|+.||++++++++.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999999999999998876653211 1267899999999999999999999988
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhccc-CCCCeEEEEEcchhhhhccCc-hHHHHHHHHh--
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKI-DFGQVSLLVLDEADRMLDMGF-EPQIRKIVNE-- 630 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l-~l~~l~lVVIDEAHrll~~gf-~~~i~~IL~~-- 630 (1134)
..++.+..++|+.........+...++|||+||++|.+++....+ .+.++++|||||||++..... ...+..++..
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 778999999999866655555566789999999999999987766 788999999999999887643 2222233322
Q ss_pred --CCCCceEEEEeccCch-----------hHHHHHHhh------------------ccCCeeeeeccc----hh------
Q 047890 631 --MPPHRQTLMYTATWPK-----------DVRKIASDL------------------LVNPVQVNIGNV----DE------ 669 (1134)
Q Consensus 631 --l~~~~qiLllSATl~~-----------~v~~l~~~~------------------l~~~~~i~i~~~----d~------ 669 (1134)
.....++|+||||+.. .+.++...+ +..+........ +.
T Consensus 402 ~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 1455789999999742 111111111 111111000000 00
Q ss_pred --------hhcc----cceeeEE--E---------e--------------------------------------------
Q 047890 670 --------LAAN----KAITQHV--E---------V-------------------------------------------- 682 (1134)
Q Consensus 670 --------l~~~----~~i~~~~--~---------~-------------------------------------------- 682 (1134)
.... ..+.... . +
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0000 0000000 0 0
Q ss_pred -----------------------------------------------cchhHHHHHHHHHHHHH---hcCCEEEEEeCcH
Q 047890 683 -----------------------------------------------VPQMEKERRLQQILRAQ---ERGSRVIIFCSTK 712 (1134)
Q Consensus 683 -----------------------------------------------v~~~ek~~~L~~llk~~---~~~~kvLVF~nT~ 712 (1134)
.....|...|..++... ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 00112333444455443 3468999999999
Q ss_pred HHHHHHHHHhcCC-------------CcEEEecCCCChhHHHHHHHHHhc-CCCCeeeecccceeccccCcceEEEeecC
Q 047890 713 RLCDQLARSIGRN-------------FGAIAIHGDKSQGERDWVLNQFRS-GKSPILVATDVAARGLDIKDIRVVINYDF 778 (1134)
Q Consensus 713 ~~ae~La~~L~~~-------------~~v~~LhG~ms~~eR~~il~~Frs-Ge~~VLVATdvl~~GLDIp~v~~VI~~d~ 778 (1134)
+.++.|++.|.+. ..+..+|++|+..+|.+++++|++ |+++|||||+++++||||++|++||+||+
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC
T ss_pred HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC
Confidence 9999999999642 334566899999999999999999 99999999999999999999999999999
Q ss_pred CCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 779 PNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 779 P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
|+++..|+||+|| ||. ..|.|++|+...+.
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999 999 78999999876544
No 31
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.5e-38 Score=390.19 Aligned_cols=323 Identities=20% Similarity=0.246 Sum_probs=249.8
Q ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 474 SAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 474 ~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
..|| .||++|..+++.++.|+ |+.+.||+|||++|++|++.... .+..|+||+||++||.|+++++..+.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-------~g~~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-------TGKGVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-------TSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-------cCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 4799 99999999999999998 99999999999999999984321 35689999999999999999999999
Q ss_pred cCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhc------ccCCCCeEEEEEcchhhhh-ccC------
Q 047890 554 RSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMK------KIDFGQVSLLVLDEADRML-DMG------ 619 (1134)
Q Consensus 554 ~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~------~l~l~~l~lVVIDEAHrll-~~g------ 619 (1134)
...++.+.+++||..... +....+++|+|+||++| +++|... .+.+..+.++||||||+|+ +..
T Consensus 149 ~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIi 226 (844)
T 1tf5_A 149 EFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 226 (844)
T ss_dssp HHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred hhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhh
Confidence 888999999999976543 33344699999999999 7777543 3567899999999999998 654
Q ss_pred ---------chHHHHHHHHhCC---------CCceEE-----------------EEeccCchhHHHH---H--HhhccC-
Q 047890 620 ---------FEPQIRKIVNEMP---------PHRQTL-----------------MYTATWPKDVRKI---A--SDLLVN- 658 (1134)
Q Consensus 620 ---------f~~~i~~IL~~l~---------~~~qiL-----------------llSATl~~~v~~l---~--~~~l~~- 658 (1134)
|...+..|+..++ +.+|++ ++|||++..+..+ + ..++..
T Consensus 227 sg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d 306 (844)
T 1tf5_A 227 SGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKD 306 (844)
T ss_dssp EEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBT
T ss_pred cCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcC
Confidence 5678888998886 367777 8999976433322 2 112211
Q ss_pred --Ce-----e-----------------------------eeeccch------------------------------h---
Q 047890 659 --PV-----Q-----------------------------VNIGNVD------------------------------E--- 669 (1134)
Q Consensus 659 --~~-----~-----------------------------i~i~~~d------------------------------~--- 669 (1134)
++ . +.+.... +
T Consensus 307 ~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~ 386 (844)
T 1tf5_A 307 VDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRN 386 (844)
T ss_dssp TTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred CceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHH
Confidence 00 0 0000000 0
Q ss_pred --------hhcccce----eeEEEecchhHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCC
Q 047890 670 --------LAANKAI----TQHVEVVPQMEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDK 735 (1134)
Q Consensus 670 --------l~~~~~i----~~~~~~v~~~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~m 735 (1134)
+..+..+ ...+..+...+|...|..++... ..+.++||||+|++.++.|+..|.+ ++.+.+||+++
T Consensus 387 iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~ 466 (844)
T 1tf5_A 387 IYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 466 (844)
T ss_dssp HHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred HhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 0000000 01123345566777777766543 5678899999999999999999964 78999999999
Q ss_pred ChhHHHHHHHHHhcCCCCeeeecccceeccccC--------cceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecc
Q 047890 736 SQGERDWVLNQFRSGKSPILVATDVAARGLDIK--------DIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSE 807 (1134)
Q Consensus 736 s~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp--------~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~ 807 (1134)
...++..+.+.|+.| .|||||++++||+||+ ++.+||+++.|.+.+.|+||+||+||.|.+|.+++|++.
T Consensus 467 ~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~ 544 (844)
T 1tf5_A 467 HEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSM 544 (844)
T ss_dssp HHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEET
T ss_pred cHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecH
Confidence 888887666666554 6999999999999999 788999999999999999999999999999999999987
Q ss_pred cch
Q 047890 808 QDS 810 (1134)
Q Consensus 808 ~d~ 810 (1134)
+|.
T Consensus 545 eD~ 547 (844)
T 1tf5_A 545 EDE 547 (844)
T ss_dssp TSS
T ss_pred HHH
Confidence 763
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-37 Score=397.88 Aligned_cols=311 Identities=21% Similarity=0.261 Sum_probs=245.7
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.+|. |+++|.+||+.++.++++|++++||+|||++|+++++..+. .+.++|||+||++|+.|++++|.+++.
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-------~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-------TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 4665 99999999999999999999999999999999998887765 457999999999999999999999765
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCC
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH 634 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~ 634 (1134)
.+.+++|+.... ..++|+|+||++|.+++......+.++++|||||||++.++.+...+..++..++..
T Consensus 155 ----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 566777765432 357899999999999998877888999999999999999999999999999999999
Q ss_pred ceEEEEeccCchhHH--HHHHhhccCCeeeeeccchhhhcccceeeEEEe---------cchh-----------------
Q 047890 635 RQTLMYTATWPKDVR--KIASDLLVNPVQVNIGNVDELAANKAITQHVEV---------VPQM----------------- 686 (1134)
Q Consensus 635 ~qiLllSATl~~~v~--~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~---------v~~~----------------- 686 (1134)
.++|+||||++.... +++......+..+....... ..+..++.. +...
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS----SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc----ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 999999999876432 33332333333322211110 001111110 0000
Q ss_pred ------------H------H--------HHHHHHHHHHHh--cCCEEEEEeCcHHHHHHHHHHhcC-CC-----------
Q 047890 687 ------------E------K--------ERRLQQILRAQE--RGSRVIIFCSTKRLCDQLARSIGR-NF----------- 726 (1134)
Q Consensus 687 ------------e------k--------~~~L~~llk~~~--~~~kvLVF~nT~~~ae~La~~L~~-~~----------- 726 (1134)
. + ...+..+++.+. ...++||||+++..|+.++..|.. ++
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 0 0 122333333332 345899999999999999998854 11
Q ss_pred ----------------------------cEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe---
Q 047890 727 ----------------------------GAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN--- 775 (1134)
Q Consensus 727 ----------------------------~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~--- 775 (1134)
.+..+||+|+..+|+.+++.|++|+++|||||+++++|||+|++++||+
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~ 459 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 459 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSE
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCc
Confidence 2788999999999999999999999999999999999999999999999
Q ss_pred -ecC----CCChhhHHHhhhccCcCCC--cceeEEEeccc
Q 047890 776 -YDF----PNGVEDYVHRIGRTGRAGA--TGVAHTFFSEQ 808 (1134)
Q Consensus 776 -~d~----P~s~~~yiQRiGRagR~Gq--kG~~ii~~~~~ 808 (1134)
||. |+++.+|+||+||+||.|. .|.|++++.+.
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 998 8999999999999999996 59999999865
No 33
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2e-38 Score=410.84 Aligned_cols=317 Identities=23% Similarity=0.324 Sum_probs=253.8
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.|| +|+++|.++|+.++.++|+|++|+||||||++|+++++..+. .+.++|||+||++|+.|+++.+++|+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-------~~~~~Lil~PtreLa~Q~~~~l~~l~- 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-------KGKKSALVFPTVTLVKQTLERLQKLA- 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-------TTCCEEEEESSHHHHHHHHHHHHTTS-
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-------cCCeEEEEechHHHHHHHHHHHHHhh-
Confidence 578 599999999999999999999999999999988888777652 56799999999999999999999987
Q ss_pred CCCCceEEecCCCCC---chhHHhhcCC-CcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh----------c-cC
Q 047890 555 SSRLSCTCLYGGAPK---GPQLRELDQG-ADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML----------D-MG 619 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~---~~~l~~l~~~-~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll----------~-~g 619 (1134)
..++.+.+++|+... ......+..+ ++|||+||++|.+++.. +.+.++++|||||||++. + ++
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 678899999999887 5556666665 99999999999888764 667899999999997644 4 78
Q ss_pred chHH-HHHHHHhCC-----------CCceEEEEecc-CchhHHH-HHHhhccCCeeeeeccchhhhcccceeeEEEecch
Q 047890 620 FEPQ-IRKIVNEMP-----------PHRQTLMYTAT-WPKDVRK-IASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQ 685 (1134)
Q Consensus 620 f~~~-i~~IL~~l~-----------~~~qiLllSAT-l~~~v~~-l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~ 685 (1134)
|... +..++..++ ...|+|+|||| .+..+.. +...++. +.+.. .......+.+.+..+
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~--~~~~~~~i~~~~~~~-- 295 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR--LVSVARNITHVRISS-- 295 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB--CCCCCCCEEEEEESC--
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc--CCCCcCCceeEEEec--
Confidence 8888 888888776 78899999999 5655543 3333322 22211 111233344444433
Q ss_pred hHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEE-EecCCCChhHHHHHHHHHhcCCCCeeee----cc
Q 047890 686 MEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAI-AIHGDKSQGERDWVLNQFRSGKSPILVA----TD 759 (1134)
Q Consensus 686 ~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~-~LhG~ms~~eR~~il~~FrsGe~~VLVA----Td 759 (1134)
++...|..+++. .+.++||||++++.++.|+..|.. ++.+. .+|| +|.+ +++|++|+++|||| |+
T Consensus 296 -~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 345556666666 348999999999999999999954 67887 8998 3555 99999999999999 99
Q ss_pred cceeccccCc-ceEEEeecCCC----------------------------------------------------------
Q 047890 760 VAARGLDIKD-IRVVINYDFPN---------------------------------------------------------- 780 (1134)
Q Consensus 760 vl~~GLDIp~-v~~VI~~d~P~---------------------------------------------------------- 780 (1134)
++++|||+++ |++||+||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------ChhhHHHhhhccCcCCC----cceeEEEecccchHHHHHHHHHHH
Q 047890 781 --------------GVEDYVHRIGRTGRAGA----TGVAHTFFSEQDSKYAADLVKVLE 821 (1134)
Q Consensus 781 --------------s~~~yiQRiGRagR~Gq----kG~~ii~~~~~d~~~~~~l~k~L~ 821 (1134)
+...|+||+||++|.+. +|.+++++ .|.+.+..+.+.+.
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 67789999999999654 45566655 67777777777765
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.7e-38 Score=409.27 Aligned_cols=320 Identities=21% Similarity=0.308 Sum_probs=251.4
Q ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 474 SAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 474 ~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
..||. | ++|.++|+.++.++|+|++++||||||+ |+++++..+.. .++++|||+||++|+.|+++.+++++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~------~~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL------KGKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT------TSCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh------cCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 47999 9 9999999999999999999999999998 88887766542 46799999999999999999999998
Q ss_pred cCCCC----ceEEecCCCCCchh---HHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHH
Q 047890 554 RSSRL----SCTCLYGGAPKGPQ---LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRK 626 (1134)
Q Consensus 554 ~~~~i----~v~~l~GG~~~~~~---l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~ 626 (1134)
...++ .+.+++|+...... ...+.. ++|+|+||++|.+++.. +.++++|||||||+|++ |...+..
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~ 196 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDK 196 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHH
T ss_pred hhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHH
Confidence 88778 88999999877653 444555 99999999999997764 66899999999999998 5677777
Q ss_pred HHHhC-----------CCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHH
Q 047890 627 IVNEM-----------PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQI 695 (1134)
Q Consensus 627 IL~~l-----------~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~l 695 (1134)
++..+ +...+++++|||++.. ..++..++.++..+.+.... .....+.+.+. ..++...|..+
T Consensus 197 i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~--~~~~~i~~~~~---~~~k~~~L~~l 270 (1054)
T 1gku_B 197 LLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR--ITVRNVEDVAV---NDESISTLSSI 270 (1054)
T ss_dssp HHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE--ECCCCEEEEEE---SCCCTTTTHHH
T ss_pred HHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc--cCcCCceEEEe---chhHHHHHHHH
Confidence 77665 3467899999999877 53443333332223222111 11222333332 23444555566
Q ss_pred HHHHhcCCEEEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHhcCCCCeeee----cccceeccccCcc-
Q 047890 696 LRAQERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVA----TDVAARGLDIKDI- 770 (1134)
Q Consensus 696 lk~~~~~~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVA----Tdvl~~GLDIp~v- 770 (1134)
++.. +.++||||++++.|+.|++.|...+.+..+|+++ .++++.|++|+++|||| |+++++|||+++|
T Consensus 271 l~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI 343 (1054)
T 1gku_B 271 LEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERI 343 (1054)
T ss_dssp HTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTC
T ss_pred Hhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcc
Confidence 6543 5789999999999999999997668899999998 37899999999999999 9999999999995
Q ss_pred eEEEeecCC-----------------------------------------------------------------------
Q 047890 771 RVVINYDFP----------------------------------------------------------------------- 779 (1134)
Q Consensus 771 ~~VI~~d~P----------------------------------------------------------------------- 779 (1134)
++||++|+|
T Consensus 344 ~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 423 (1054)
T 1gku_B 344 RFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIF 423 (1054)
T ss_dssp CEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEE
T ss_pred cEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceec
Confidence 999999999
Q ss_pred CChhhHHHhhhccCcCCCcc--eeEEEecccchHHHHHHHHHHHh
Q 047890 780 NGVEDYVHRIGRTGRAGATG--VAHTFFSEQDSKYAADLVKVLEG 822 (1134)
Q Consensus 780 ~s~~~yiQRiGRagR~GqkG--~~ii~~~~~d~~~~~~l~k~L~~ 822 (1134)
.+...|+||+||++|.|..| .+++|+...+...+..+.+.+..
T Consensus 424 ~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 424 PDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp ECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999988776 47788887788888888877774
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2e-36 Score=394.30 Aligned_cols=346 Identities=22% Similarity=0.241 Sum_probs=262.2
Q ss_pred hHHHHH-HHcCCCCCCHHHHHHHHHHHc----CC--CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccH
Q 047890 467 PRVASM-HSAGFSSPTPIQAQTWPIALQ----GR--DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTR 539 (1134)
Q Consensus 467 ~~l~~l-~~~Gf~~prpiQ~eaI~~il~----gr--dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTr 539 (1134)
..+..+ ...+|. +|++|.+||+.++. ++ ++|++++||+|||++|+++++..+. .+.++||||||+
T Consensus 591 ~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-------~g~~vlvlvPt~ 662 (1151)
T 2eyq_A 591 EQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------NHKQVAVLVPTT 662 (1151)
T ss_dssp HHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-------TTCEEEEECSSH
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-------hCCeEEEEechH
Confidence 334444 345775 79999999999987 55 8999999999999999988877653 456999999999
Q ss_pred HHHHHHHHHHHHhccCCCCceEEecCCCCCchh---HHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhh
Q 047890 540 ELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ---LRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 540 eLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~---l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrl 615 (1134)
+|+.||++++.+++...++.+.++++....... +..+.. .++|||+|++.|. ..+.+.++++|||||||++
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF 737 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc
Confidence 999999999999887777888888776543332 333444 4899999997663 3567889999999999993
Q ss_pred hccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHH
Q 047890 616 LDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQI 695 (1134)
Q Consensus 616 l~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~l 695 (1134)
......++..+....++|+||||+.+....+....+.+...+..... ....+...+. ...+...+..+
T Consensus 738 -----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~----~r~~i~~~~~---~~~~~~i~~~i 805 (1151)
T 2eyq_A 738 -----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA----RRLAVKTFVR---EYDSMVVREAI 805 (1151)
T ss_dssp -----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC----BCBCEEEEEE---ECCHHHHHHHH
T ss_pred -----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC----CccccEEEEe---cCCHHHHHHHH
Confidence 44566677777778899999999877766666555544332222111 1112222222 22334556667
Q ss_pred HHHHhcCCEEEEEeCcHHHHHHHHHHhcC---CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceE
Q 047890 696 LRAQERGSRVIIFCSTKRLCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRV 772 (1134)
Q Consensus 696 lk~~~~~~kvLVF~nT~~~ae~La~~L~~---~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~ 772 (1134)
++.+..+.++||||++++.++.+++.|.+ ++.+..+||+|+.++|++++++|++|+++|||||+++++||||+++++
T Consensus 806 l~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 806 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp HHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 77777889999999999999999999865 567999999999999999999999999999999999999999999999
Q ss_pred EEeecC-CCChhhHHHhhhccCcCCCcceeEEEecccc--hHHHHHHHHHHHhhcC---CCCHHHHHHHhh
Q 047890 773 VINYDF-PNGVEDYVHRIGRTGRAGATGVAHTFFSEQD--SKYAADLVKVLEGANQ---HVPPEVRDMALR 837 (1134)
Q Consensus 773 VI~~d~-P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d--~~~~~~l~k~L~~~~~---~lp~~l~dla~r 837 (1134)
||+++. ++++..|+||+||+||.|++|.|++++...+ .....+.++.++.... .+.....|+..|
T Consensus 886 VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~l~~~~~~rl~~i~~~~~lg~gf~ia~~dl~ir 956 (1151)
T 2eyq_A 886 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 956 (1151)
T ss_dssp EEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGGSCHHHHHHHHHHTTCCSBSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCccccCHHHHHHHHHHHHhhccCCcchHHHHHhccC
Confidence 999988 5799999999999999999999999987643 2333444444443322 233344455444
No 36
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.4e-36 Score=360.32 Aligned_cols=313 Identities=17% Similarity=0.163 Sum_probs=233.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC
Q 047890 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS 556 (1134)
Q Consensus 477 f~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~ 556 (1134)
..+|+++|.+||+.++.++++|++++||+|||++|+++++..+.. ...++||||||++|+.||+++|++++...
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 347999999999999999999999999999999999988877653 23499999999999999999999997666
Q ss_pred CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCce
Q 047890 557 RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636 (1134)
Q Consensus 557 ~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~q 636 (1134)
.+.+..++++...... +...++|+|+|++.|... ....+.++++|||||||++.. ..+..++..+....+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 6788888888765543 456689999999976542 335567899999999999875 557778888878889
Q ss_pred EEEEeccCchhHHHHHH-hhccCCeeeeeccchhh----hcccceeeEEEe---------------------cchhHHHH
Q 047890 637 TLMYTATWPKDVRKIAS-DLLVNPVQVNIGNVDEL----AANKAITQHVEV---------------------VPQMEKER 690 (1134)
Q Consensus 637 iLllSATl~~~v~~l~~-~~l~~~~~i~i~~~d~l----~~~~~i~~~~~~---------------------v~~~ek~~ 690 (1134)
+|+||||++.....+.. ..+..+..+.+...+.+ .....+...... +....+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999998765433221 11222222222111000 000000000000 01111223
Q ss_pred HHHHHHHHH-hcC-CEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeec-ccceeccc
Q 047890 691 RLQQILRAQ-ERG-SRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVAT-DVAARGLD 766 (1134)
Q Consensus 691 ~L~~llk~~-~~~-~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVAT-dvl~~GLD 766 (1134)
.+..++... ..+ .++||||+ .+.++.|++.|.+ ...+..+||+++.++|+++++.|++|+++||||| +++++|||
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 344444332 333 45555665 8889999999965 3589999999999999999999999999999999 99999999
Q ss_pred cCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEec
Q 047890 767 IKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFS 806 (1134)
Q Consensus 767 Ip~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~ 806 (1134)
++++++||++++|++...|+|++||++|.|+.+.++++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999998874444444
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=9.3e-36 Score=382.87 Aligned_cols=311 Identities=19% Similarity=0.230 Sum_probs=236.0
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.+|. |+++|.++|+.++.++++|++++||+|||++|++++...+. .+.++|||+|+++|+.|+++++.+++.
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-------~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-------NMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-------TTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 3554 89999999999999999999999999999999998877665 467999999999999999999998754
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCC
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH 634 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~ 634 (1134)
++.+..++|+... ...++|+|+||++|.+++......+.++++|||||||++.++++...+..++..++..
T Consensus 108 --~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 108 --DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp ---CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred --CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 4677888887643 2347999999999999998877788899999999999999999999999999999999
Q ss_pred ceEEEEeccCchhHHHHHHhhcc---CCeeeeeccchhhhcc------cceee---------------------------
Q 047890 635 RQTLMYTATWPKDVRKIASDLLV---NPVQVNIGNVDELAAN------KAITQ--------------------------- 678 (1134)
Q Consensus 635 ~qiLllSATl~~~v~~l~~~~l~---~~~~i~i~~~d~l~~~------~~i~~--------------------------- 678 (1134)
.++|+||||++... ++...+.. ....+........... ..+..
T Consensus 179 v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 179 VKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp CEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred CCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 99999999987543 34333311 1111100000000000 00000
Q ss_pred --------------------------------------------------------EEEecchhHHHHHHHHHHHHHhcC
Q 047890 679 --------------------------------------------------------HVEVVPQMEKERRLQQILRAQERG 702 (1134)
Q Consensus 679 --------------------------------------------------------~~~~v~~~ek~~~L~~llk~~~~~ 702 (1134)
+........+...|..++... ..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~ 336 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-EL 336 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CC
Confidence 000001112223333333332 34
Q ss_pred CEEEEEeCcHHHHHHHHHHhcC-CC---------------------------------------cEEEecCCCChhHHHH
Q 047890 703 SRVIIFCSTKRLCDQLARSIGR-NF---------------------------------------GAIAIHGDKSQGERDW 742 (1134)
Q Consensus 703 ~kvLVF~nT~~~ae~La~~L~~-~~---------------------------------------~v~~LhG~ms~~eR~~ 742 (1134)
.++||||++++.|+.++..|.. ++ .+..+|++|+..+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 6899999999999999998854 12 4789999999999999
Q ss_pred HHHHHhcCCCCeeeecccceeccccCcceEEEeecCC---------CChhhHHHhhhccCcCC--CcceeEEEe
Q 047890 743 VLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFP---------NGVEDYVHRIGRTGRAG--ATGVAHTFF 805 (1134)
Q Consensus 743 il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P---------~s~~~yiQRiGRagR~G--qkG~~ii~~ 805 (1134)
+++.|++|+++|||||+++++|||+|++.+|| ++.+ .+..+|+|++||+||.| ..|.|++++
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-eccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 99999999999999999999999999955554 4443 49999999999999998 567777777
No 38
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.1e-36 Score=370.54 Aligned_cols=321 Identities=19% Similarity=0.241 Sum_probs=226.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
|. .|+++|..+++.++.|+ |+.+.||+|||++|++|++..+. .+..++||+||++||.|+++++.+++..
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-------~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-------TGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-------TSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-------cCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 54 79999999999999998 99999999999999999985432 3568999999999999999999999988
Q ss_pred CCCceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhc------ccCCCCeEEEEEcchhhhh-ccC--------
Q 047890 556 SRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMK------KIDFGQVSLLVLDEADRML-DMG-------- 619 (1134)
Q Consensus 556 ~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~------~l~l~~l~lVVIDEAHrll-~~g-------- 619 (1134)
.++.+.+++||.... .+.+..+++|+|+||++| +++|..+ .+.+..+.++||||||+|+ +.+
T Consensus 142 lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg 219 (853)
T 2fsf_A 142 LGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISG 219 (853)
T ss_dssp TTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccC
Confidence 899999999997643 344445699999999999 8888754 3567899999999999998 543
Q ss_pred -------chHHHHHHHHhCCC--------------------CceEE------------------------EEeccCchhH
Q 047890 620 -------FEPQIRKIVNEMPP--------------------HRQTL------------------------MYTATWPKDV 648 (1134)
Q Consensus 620 -------f~~~i~~IL~~l~~--------------------~~qiL------------------------llSATl~~~v 648 (1134)
|...+..|+..++. .++++ ++|||.+..+
T Consensus 220 ~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~ 299 (853)
T 2fsf_A 220 PAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLM 299 (853)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHH
Confidence 45667777777653 44543 8899865422
Q ss_pred HHH---H--Hhhcc--------CCe-----------------------------eeeeccchh-----------------
Q 047890 649 RKI---A--SDLLV--------NPV-----------------------------QVNIGNVDE----------------- 669 (1134)
Q Consensus 649 ~~l---~--~~~l~--------~~~-----------------------------~i~i~~~d~----------------- 669 (1134)
..+ + ..++. +.. .+.+.....
T Consensus 300 ~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl 379 (853)
T 2fsf_A 300 HHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKL 379 (853)
T ss_dssp ---------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhh
Confidence 221 1 11110 000 000000000
Q ss_pred ------------------------hhcccce----eeEEEecchhHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHH
Q 047890 670 ------------------------LAANKAI----TQHVEVVPQMEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLAR 720 (1134)
Q Consensus 670 ------------------------l~~~~~i----~~~~~~v~~~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~ 720 (1134)
+..++.+ ...+..+...+|...|..+++.. ..+.++||||+|++.++.|++
T Consensus 380 ~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~ 459 (853)
T 2fsf_A 380 AGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSN 459 (853)
T ss_dssp EEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred hcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 0000000 01123345667777777777554 467889999999999999999
Q ss_pred Hhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCc------------------------------
Q 047890 721 SIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKD------------------------------ 769 (1134)
Q Consensus 721 ~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~------------------------------ 769 (1134)
.|. .++.+.+||+++...++..+.++|+.| .|+|||++++||+||+.
T Consensus 460 ~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (853)
T 2fsf_A 460 ELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRH 537 (853)
T ss_dssp HHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhh
Confidence 995 478999999999888888888888887 69999999999999987
Q ss_pred --c-----eEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 770 --I-----RVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 770 --v-----~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
| .+||+++.|.+.+.|+||+||+||.|.+|.+++|++.+|.
T Consensus 538 ~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 538 DAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 3 6999999999999999999999999999999999987663
No 39
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1e-36 Score=362.35 Aligned_cols=291 Identities=22% Similarity=0.243 Sum_probs=219.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
+|+++|.++++.++.++++||+++||+|||++|++++... +.++|||||+++|+.||+++|.+| ++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~ 158 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIF----GE 158 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----------CSCEEEEESSHHHHHHHHHHGGGG----CG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHHHHHhC----CC
Confidence 6999999999999999999999999999999998877653 358999999999999999999995 46
Q ss_pred c-eEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceE
Q 047890 559 S-CTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQT 637 (1134)
Q Consensus 559 ~-v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qi 637 (1134)
. +.+++|+... ..+|+|+|++.|...+..- ..++++|||||||++.+..|.. ++..+ ...++
T Consensus 159 ~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~ 221 (472)
T 2fwr_A 159 EYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFR 221 (472)
T ss_dssp GGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEE
T ss_pred cceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeE
Confidence 6 7777766532 3689999999987765421 2468999999999998876653 44444 45679
Q ss_pred EEEeccCch-------------------hHHHHHHhhccCCeeee--eccchhh-hc---------------------cc
Q 047890 638 LMYTATWPK-------------------DVRKIASDLLVNPVQVN--IGNVDEL-AA---------------------NK 674 (1134)
Q Consensus 638 LllSATl~~-------------------~v~~l~~~~l~~~~~i~--i~~~d~l-~~---------------------~~ 674 (1134)
|+||||+.. ...++...++.....+. +...... .. ..
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 999999762 23333222232221111 1100000 00 00
Q ss_pred ceeeEE---------------------EecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCCCcEEEecC
Q 047890 675 AITQHV---------------------EVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHG 733 (1134)
Q Consensus 675 ~i~~~~---------------------~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG 733 (1134)
.+...+ ..+....|...|.++++. ..+.++||||++++.++.|++.|. +..+|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC----cceeeC
Confidence 000000 001123355667777766 457899999999999999999984 567999
Q ss_pred CCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCc-ceeEEEe
Q 047890 734 DKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGAT-GVAHTFF 805 (1134)
Q Consensus 734 ~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~Gqk-G~~ii~~ 805 (1134)
+++.++|++++++|++|+++|||||+++++|||++++++||+++.|+++..|+|++||++|.|+. +.+++|.
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~ 449 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 449 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999965 4555543
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.3e-35 Score=365.24 Aligned_cols=323 Identities=21% Similarity=0.224 Sum_probs=250.9
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.|+ .|+++|..+++.++.|+ |+.+.||+|||++|++|++.... .+..|+||+||++||.|.++++..+..
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL-------~g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL-------AGNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT-------TTSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH-------hCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 588 89999999999999998 99999999999999999975332 345799999999999999999999998
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhc------ccCCCCeEEEEEcchhhhh-cc--------
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMK------KIDFGQVSLLVLDEADRML-DM-------- 618 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~------~l~l~~l~lVVIDEAHrll-~~-------- 618 (1134)
..++.+.+++|+.+.. .+.....|+|+|+||++| +++|..+ .+.+..+.++||||||+|+ +.
T Consensus 178 ~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiS 255 (922)
T 1nkt_A 178 FLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 255 (922)
T ss_dssp HTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred hcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeec
Confidence 8999999999997643 333344699999999999 8888654 4667889999999999998 43
Q ss_pred -------CchHHHHHHHHhCC---------CCceEE-----------------EEeccCchhHHHH---HH--hhcc---
Q 047890 619 -------GFEPQIRKIVNEMP---------PHRQTL-----------------MYTATWPKDVRKI---AS--DLLV--- 657 (1134)
Q Consensus 619 -------gf~~~i~~IL~~l~---------~~~qiL-----------------llSATl~~~v~~l---~~--~~l~--- 657 (1134)
+|...+..|+..++ +.++++ ++|||.+..+..+ ++ .++.
T Consensus 256 g~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~ 335 (922)
T 1nkt_A 256 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDK 335 (922)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTT
T ss_pred CCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccc
Confidence 47788999999997 678888 8999976533322 21 1111
Q ss_pred -----CCeeeeeccc---------------------------hhhhccccee----------------------------
Q 047890 658 -----NPVQVNIGNV---------------------------DELAANKAIT---------------------------- 677 (1134)
Q Consensus 658 -----~~~~i~i~~~---------------------------d~l~~~~~i~---------------------------- 677 (1134)
+...+.+... .+......|.
T Consensus 336 dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~i 415 (922)
T 1nkt_A 336 DYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEI 415 (922)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHH
Confidence 1111101000 0000000000
Q ss_pred -------------------eEEEecchhHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCC
Q 047890 678 -------------------QHVEVVPQMEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKS 736 (1134)
Q Consensus 678 -------------------~~~~~v~~~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms 736 (1134)
..+..+...+|...|...+... ..+.++||||+|++.++.|++.|. .++.+.+||+++.
T Consensus 416 Y~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 416 YKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp HCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred hCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 0122344556776666666543 567789999999999999999995 4789999999988
Q ss_pred hhHHHHHHHHHhcCCCCeeeecccceeccccCcc----------------------------------------------
Q 047890 737 QGERDWVLNQFRSGKSPILVATDVAARGLDIKDI---------------------------------------------- 770 (1134)
Q Consensus 737 ~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v---------------------------------------------- 770 (1134)
..++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 77877777888777 699999999999999864
Q ss_pred ------eEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchH
Q 047890 771 ------RVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSK 811 (1134)
Q Consensus 771 ------~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~ 811 (1134)
.+||+++.|.+.+.|+|++||+||.|.+|.+++|++.+|.-
T Consensus 574 V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred HHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 59999999999999999999999999999999999887753
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.8e-34 Score=386.08 Aligned_cols=341 Identities=18% Similarity=0.217 Sum_probs=257.7
Q ss_pred cchhHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHH
Q 047890 464 ATLPRVASMHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELA 542 (1134)
Q Consensus 464 v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa 542 (1134)
+..+.+++++..+|..++|+|.++++.++.. +++|++||||||||++|.++++..+.+. .+.++|||+|+++||
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-----~~~kavyi~P~raLa 985 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-----SEGRCVYITPMEALA 985 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-----TTCCEEEECSCHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-----CCCEEEEEcChHHHH
Confidence 3457789999999999999999999999865 6799999999999999999999887642 355899999999999
Q ss_pred HHHHHHHHH-hccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcc--cCCCCeEEEEEcchhhhhccC
Q 047890 543 TQIQDEANK-FGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKK--IDFGQVSLLVLDEADRMLDMG 619 (1134)
Q Consensus 543 ~Q~~~el~k-l~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~--l~l~~l~lVVIDEAHrll~~g 619 (1134)
.|+++++.+ |....++++..++|+...+.. ....++|||+||++|..++.... ..+.++++|||||+|.|.+.
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~- 1061 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE- 1061 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-
T ss_pred HHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-
Confidence 999999875 666678899888887543322 22347999999999988775432 23678999999999988764
Q ss_pred chHHHHHHHH-------hCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHH---
Q 047890 620 FEPQIRKIVN-------EMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE--- 689 (1134)
Q Consensus 620 f~~~i~~IL~-------~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~--- 689 (1134)
....+..++. .+....++|+||||++ +.+++++++-.+...+.... .......+..++.........
T Consensus 1062 rg~~le~il~rl~~i~~~~~~~~riI~lSATl~-N~~dla~WL~~~~~~~~~~~--~~~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1062 NGPVLEVICSRMRYISSQIERPIRIVALSSSLS-NAKDVAHWLGCSATSTFNFH--PNVRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT-THHHHHHHHTCCSTTEEECC--GGGCSSCEEEEEEEECCCSHHHHH
T ss_pred CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC-CHHHHHHHhCCCCCCeEEeC--CCCCCCCeEEEEEeccCCCchhhh
Confidence 4554444433 4567889999999996 46677776644332221111 111222233343333222221
Q ss_pred ----HHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-----------------------------------CCcEEE
Q 047890 690 ----RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-----------------------------------NFGAIA 730 (1134)
Q Consensus 690 ----~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-----------------------------------~~~v~~ 730 (1134)
..+...+.....++++||||++++.|+.++..|.. ..++..
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 22334445556778999999999999888765511 135889
Q ss_pred ecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe----ec------CCCChhhHHHhhhccCcCCC--c
Q 047890 731 IHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN----YD------FPNGVEDYVHRIGRTGRAGA--T 798 (1134)
Q Consensus 731 LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~----~d------~P~s~~~yiQRiGRagR~Gq--k 798 (1134)
+|++|+..+|..+++.|++|.++|||||+++++|||+|...+||. || .|-+..+|+|++|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999999983 32 35688999999999999986 7
Q ss_pred ceeEEEecccchHHHHHH
Q 047890 799 GVAHTFFSEQDSKYAADL 816 (1134)
Q Consensus 799 G~~ii~~~~~d~~~~~~l 816 (1134)
|.|++++...+...+..+
T Consensus 1299 G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEEEEGGGHHHHHHH
T ss_pred eEEEEEecchHHHHHHHH
Confidence 999999988777665554
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.6e-34 Score=383.22 Aligned_cols=332 Identities=21% Similarity=0.284 Sum_probs=245.4
Q ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEEccCCCchhHHHHHHHHHHHHHhcCC----CCCCCEEEEEcccHHHHHHHHHHHH
Q 047890 476 GFSSPTPIQAQTWPIALQ-GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN----PRNGPTVLVLAPTRELATQIQDEAN 550 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~-grdvLl~ApTGSGKTla~llpal~~L~~~~~~----~~~g~kvLVLvPTreLa~Q~~~el~ 550 (1134)
||++|+++|.++++.++. ++++|++||||||||++|.++++..+.+.... ...+.++|||+|+++|+.|+++.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999885 68999999999999999999999887653221 2356799999999999999999999
Q ss_pred HhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcc--cCCCCeEEEEEcchhhhhccCchHHHHHHH
Q 047890 551 KFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKK--IDFGQVSLLVLDEADRMLDMGFEPQIRKIV 628 (1134)
Q Consensus 551 kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~--l~l~~l~lVVIDEAHrll~~gf~~~i~~IL 628 (1134)
+.+...++.|..++|+....... ...++|+|+||++|..++.... ..+.++++|||||+|.+.+ .....++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 88888899999999987654322 2458999999999977665432 2367899999999997765 4555554443
Q ss_pred H-------hCCCCceEEEEeccCchhHHHHHHhhccCCe--eeeeccchhhhcccceeeEEEecchhH---HHHHHHH--
Q 047890 629 N-------EMPPHRQTLMYTATWPKDVRKIASDLLVNPV--QVNIGNVDELAANKAITQHVEVVPQME---KERRLQQ-- 694 (1134)
Q Consensus 629 ~-------~l~~~~qiLllSATl~~~v~~l~~~~l~~~~--~i~i~~~d~l~~~~~i~~~~~~v~~~e---k~~~L~~-- 694 (1134)
. .+....|+|+||||++ +.+++++.+-.++. .+.+. .......+.+++..+.... ....+..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~---~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~ 307 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFD---NSFRPVPLEQTYVGITEKKAIKRFQIMNEIV 307 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCT-THHHHHHHTTCCHHHHEEECC---GGGCSSCEEEECCEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccC-CHHHHHHHhCCCCCCCeEEEC---CCCccCccEEEEeccCCcchhhhhHHHHHHH
Confidence 3 3567889999999997 45666665433211 11111 1111222333332222221 1122222
Q ss_pred --HHHHHhcCCEEEEEeCcHHHHHHHHHHhcC--------------------------------------CCcEEEecCC
Q 047890 695 --ILRAQERGSRVIIFCSTKRLCDQLARSIGR--------------------------------------NFGAIAIHGD 734 (1134)
Q Consensus 695 --llk~~~~~~kvLVF~nT~~~ae~La~~L~~--------------------------------------~~~v~~LhG~ 734 (1134)
.+.....++++||||+|++.|+.+++.|.+ ..++..+|++
T Consensus 308 ~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHag 387 (1724)
T 4f92_B 308 YEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAG 387 (1724)
T ss_dssp HHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSS
T ss_pred HHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCC
Confidence 222223467899999999888877776521 1357899999
Q ss_pred CChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe----ecC------CCChhhHHHhhhccCcCC--CcceeE
Q 047890 735 KSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN----YDF------PNGVEDYVHRIGRTGRAG--ATGVAH 802 (1134)
Q Consensus 735 ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~----~d~------P~s~~~yiQRiGRagR~G--qkG~~i 802 (1134)
|+..+|..+++.|++|.++|||||++++.|||+|.+++||. |+. |-+..+|+||+|||||.| ..|.++
T Consensus 388 L~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~i 467 (1724)
T 4f92_B 388 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGI 467 (1724)
T ss_dssp SCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEE
Confidence 99999999999999999999999999999999999999985 443 357899999999999987 478999
Q ss_pred EEecccchHHHHH
Q 047890 803 TFFSEQDSKYAAD 815 (1134)
Q Consensus 803 i~~~~~d~~~~~~ 815 (1134)
+++...+...+..
T Consensus 468 i~~~~~~~~~~~~ 480 (1724)
T 4f92_B 468 LITSHGELQYYLS 480 (1724)
T ss_dssp EEEESTTCCHHHH
T ss_pred EEecchhHHHHHH
Confidence 9887766554443
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.2e-35 Score=361.00 Aligned_cols=303 Identities=17% Similarity=0.131 Sum_probs=225.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC
Q 047890 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS 556 (1134)
Q Consensus 477 f~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~ 556 (1134)
+..++|+|+.+++.+++++++|++++||||||++|+++++..+.. .+.++|||+||++||.|+++.++.+
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~------~~~~vLvl~PtreLa~Qi~~~l~~~---- 238 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK------RRLRTLILAPTRVVAAEMEEALRGL---- 238 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTTTS----
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh------CCCeEEEEcChHHHHHHHHHHhcCC----
Confidence 467889988889999999999999999999999999999877653 4578999999999999999888632
Q ss_pred CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCC-CCc
Q 047890 557 RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP-PHR 635 (1134)
Q Consensus 557 ~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~-~~~ 635 (1134)
.+.. ...... .....+..|.++|.+.|...+... ..+.++++|||||||++ +.+|...+..++..+. ..+
T Consensus 239 --~v~~-~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~ 309 (618)
T 2whx_A 239 --PIRY-QTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEA 309 (618)
T ss_dssp --CEEE-CCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSC
T ss_pred --ceeE-ecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCc
Confidence 2221 111100 011223467788888877655433 45789999999999998 6667777777776664 678
Q ss_pred eEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHH
Q 047890 636 QTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLC 715 (1134)
Q Consensus 636 qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~a 715 (1134)
|+|+||||++..+..++. .++..+.+... . +..... .+..++.. ...++||||++++.+
T Consensus 310 q~il~SAT~~~~~~~~~~---~~~~~~~v~~~--~-------------~~~~~~-~ll~~l~~--~~~~~LVF~~s~~~a 368 (618)
T 2whx_A 310 AAIFMTATPPGSTDPFPQ---SNSPIEDIERE--I-------------PERSWN-TGFDWITD--YQGKTVWFVPSIKAG 368 (618)
T ss_dssp EEEEECSSCTTCCCSSCC---CSSCEEEEECC--C-------------CSSCCS-SSCHHHHH--CCSCEEEECSSHHHH
T ss_pred cEEEEECCCchhhhhhhc---cCCceeeeccc--C-------------CHHHHH-HHHHHHHh--CCCCEEEEECChhHH
Confidence 999999999877543332 12222222110 0 000000 11122222 367999999999999
Q ss_pred HHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEE--------------------E
Q 047890 716 DQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVV--------------------I 774 (1134)
Q Consensus 716 e~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~V--------------------I 774 (1134)
+.|++.|.+ ++.+..+|++ +|.++++.|++|+++|||||+++++||||+ +++| |
T Consensus 369 ~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i 443 (618)
T 2whx_A 369 NDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVIL 443 (618)
T ss_dssp HHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEE
Confidence 999999954 6789999983 788899999999999999999999999997 8887 7
Q ss_pred eecCCCChhhHHHhhhccCcCCC-cceeEEEec---ccchHHHHHHHHHHHhhc
Q 047890 775 NYDFPNGVEDYVHRIGRTGRAGA-TGVAHTFFS---EQDSKYAADLVKVLEGAN 824 (1134)
Q Consensus 775 ~~d~P~s~~~yiQRiGRagR~Gq-kG~~ii~~~---~~d~~~~~~l~k~L~~~~ 824 (1134)
+++.|.+.++|+||+||+||.|. +|.|++|+. ..+...+..+.+.+....
T Consensus 444 ~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~ 497 (618)
T 2whx_A 444 AGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDN 497 (618)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhcccc
Confidence 78889999999999999999965 899999997 666666666666554433
No 44
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.6e-33 Score=342.29 Aligned_cols=385 Identities=17% Similarity=0.230 Sum_probs=252.6
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCcCCChhHhhhhcccccc-chhHHHHHHHcCCCCCCHHHHHHHHHHHc----
Q 047890 419 HAMHGMYSHAGSFPNNAMMRPTFMGSPGVTDLSPAEVYRQRHEVSA-TLPRVASMHSAGFSSPTPIQAQTWPIALQ---- 493 (1134)
Q Consensus 419 ~~~~~~~~h~~~~~~~a~~~P~~~~~p~i~~~~p~e~~~~~~ev~v-~~~~l~~l~~~Gf~~prpiQ~eaI~~il~---- 493 (1134)
|...++++|+| +++.+++ .+.++.++..+..+.......+.+ .++.+. ..|+|||.++|.+++.
T Consensus 5 ~~~~~~~l~dp-~~~~~l~---~~~~~~~~~~~~l~~~~~~~~~~~~~~p~l~-------~~LrpyQ~~gv~~l~~~~~~ 73 (644)
T 1z3i_X 5 RAGVRKALHDP-FEDGALV---LYEPPAISAHDLIKADKEKLPVHVVVDPVLS-------KVLRPHQREGVKFLWDCVTG 73 (644)
T ss_dssp CSSSCCCSSCT-TSTTCCE---EECCCCCCHHHHHHSCGGGSCCCEECCHHHH-------TTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCC-CccCcee---cCCCCCCCHHHHhhhccccCCceEeeChhhh-------hcccHHHHHHHHHHHHhhhc
Confidence 44568899998 7777765 333333332222111111112222 223332 2599999999999863
Q ss_pred -----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCC
Q 047890 494 -----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAP 568 (1134)
Q Consensus 494 -----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~ 568 (1134)
+..+||+++||+|||++++..++.+++..........++|||||+ +|+.||.+++++|... .+.++.++++..
T Consensus 74 ~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~ 151 (644)
T 1z3i_X 74 RRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSK 151 (644)
T ss_dssp SSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCH
T ss_pred ccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCH
Confidence 457999999999999999888887766543333344579999997 8999999999999755 466666666643
Q ss_pred Cc--hhHHhhc------CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEE
Q 047890 569 KG--PQLRELD------QGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMY 640 (1134)
Q Consensus 569 ~~--~~l~~l~------~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLll 640 (1134)
.. ..+..+. ...+|+|+|++.|.... ..+....+++|||||||++.+.. ....+.+..+.. ..+|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~--~~~~~al~~l~~-~~rl~L 226 (644)
T 1z3i_X 152 DEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD--NQTYLALNSMNA-QRRVLI 226 (644)
T ss_dssp HHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC--HHHHHHHHHHCC-SEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh--hHHHHHHHhccc-CcEEEE
Confidence 21 1122221 13789999999987643 23445678999999999987643 344445555543 458999
Q ss_pred eccCchh----HHH-------------------------------------------------HHHhhccC---------
Q 047890 641 TATWPKD----VRK-------------------------------------------------IASDLLVN--------- 658 (1134)
Q Consensus 641 SATl~~~----v~~-------------------------------------------------l~~~~l~~--------- 658 (1134)
|||.-.. +.. ++..++..
T Consensus 227 TgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~ 306 (644)
T 1z3i_X 227 SGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKY 306 (644)
T ss_dssp CSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT
T ss_pred ecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhh
Confidence 9995211 000 00001000
Q ss_pred -Cee----eeeccchh------------------------------hhcccceeeEEE----------------------
Q 047890 659 -PVQ----VNIGNVDE------------------------------LAANKAITQHVE---------------------- 681 (1134)
Q Consensus 659 -~~~----i~i~~~d~------------------------------l~~~~~i~~~~~---------------------- 681 (1134)
|.. +.+..... +.....++.+..
T Consensus 307 LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~ 386 (644)
T 1z3i_X 307 LPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQ 386 (644)
T ss_dssp SCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCS
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccc
Confidence 000 00000000 000000000000
Q ss_pred -------ecchhHHHHHHHHHHHHHh--cCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCC
Q 047890 682 -------VVPQMEKERRLQQILRAQE--RGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGK 751 (1134)
Q Consensus 682 -------~v~~~ek~~~L~~llk~~~--~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe 751 (1134)
......|...|..+++.+. .+.++||||+++..++.|...|. .++.+..+||+++.++|.+++++|++++
T Consensus 387 ~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 466 (644)
T 1z3i_X 387 NYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPS 466 (644)
T ss_dssp SCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTT
T ss_pred cccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 0011234445566665543 47899999999999999999985 4788999999999999999999999987
Q ss_pred CC---eeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHH
Q 047890 752 SP---ILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLE 821 (1134)
Q Consensus 752 ~~---VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~ 821 (1134)
.. |||+|+++++|||++.+++||+||++|++..|.|++||++|.|++..|++|..-....+.+.+.+.+.
T Consensus 467 ~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~ 539 (644)
T 1z3i_X 467 SPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQA 539 (644)
T ss_dssp CCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHH
T ss_pred CCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHH
Confidence 64 89999999999999999999999999999999999999999999887776654444444455555443
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=9.5e-35 Score=344.90 Aligned_cols=286 Identities=16% Similarity=0.150 Sum_probs=209.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 476 GFSSPTPIQAQTWPIALQGRDI-VAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~grdv-Ll~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
|+..++|+|+ +|+.+++++++ |++++||||||++|+++++..+.. .+.++|||+||++|+.|+++++..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~------~~~~~lvl~Ptr~La~Q~~~~l~g~-- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL------RRLRTLILAPTRVVAAEMEEALRGL-- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTTTS--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh------cCCcEEEECCCHHHHHHHHHHhcCc--
Confidence 6788999985 79999999887 888999999999999998875543 4578999999999999999988532
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHH-hCCC
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVN-EMPP 633 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~-~l~~ 633 (1134)
.+......... ....+..|.|+|++.|...+... ..+.++++|||||||++ +..+...+..+.. ....
T Consensus 72 ----~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 72 ----PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp ----CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred ----eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 22221111110 12334679999999988777533 56789999999999986 3333332222222 2345
Q ss_pred CceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHH
Q 047890 634 HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKR 713 (1134)
Q Consensus 634 ~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~ 713 (1134)
..++|+||||++..+..+ +..+...+.+.. ... .. .+. .+..++.. ..+++||||++++
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~--~~p-~~----~~~---------~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIER--EIP-ER----SWN---------TGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEEC--CCC-SS----CCS---------SSCHHHHH--CCSCEEEECSSHH
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCc--cCC-ch----hhH---------HHHHHHHh--CCCCEEEEcCCHH
Confidence 789999999997654332 122222222210 000 00 000 01122222 3569999999999
Q ss_pred HHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeec---------------
Q 047890 714 LCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYD--------------- 777 (1134)
Q Consensus 714 ~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d--------------- 777 (1134)
.++.|++.|.+ ++.+..+|+++. .++++.|++|+++|||||+++++||||++ ++||++|
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 99999999965 678899998654 57999999999999999999999999999 9999998
Q ss_pred -----CCCChhhHHHhhhccCcCCC-cceeEEEecc
Q 047890 778 -----FPNGVEDYVHRIGRTGRAGA-TGVAHTFFSE 807 (1134)
Q Consensus 778 -----~P~s~~~yiQRiGRagR~Gq-kG~~ii~~~~ 807 (1134)
.|.+.++|+||+||+||.|. +|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8889888643
No 46
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.7e-33 Score=337.01 Aligned_cols=326 Identities=18% Similarity=0.184 Sum_probs=225.1
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWPIAL----QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~il----~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.|+|+|.+++.+++ .++++|++++||+|||++++..+..+... ....++|||||+ +|+.||.+++++|..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKFAP 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHHCC
Confidence 59999999998874 46899999999999999987665554432 134579999995 799999999999975
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCC
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPH 634 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~ 634 (1134)
. +.+.+++++... ......+|+|+|++.|..... +....+++|||||||++.+.. ..+.+.+..+. .
T Consensus 111 ~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~ 177 (500)
T 1z63_A 111 H--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-S 177 (500)
T ss_dssp T--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-E
T ss_pred C--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-c
Confidence 3 556666655422 112347899999999876543 334578999999999998653 34555666664 4
Q ss_pred ceEEEEeccCch-hHHHHH------------------------------------HhhccCCeeeeeccch--hhhcccc
Q 047890 635 RQTLMYTATWPK-DVRKIA------------------------------------SDLLVNPVQVNIGNVD--ELAANKA 675 (1134)
Q Consensus 635 ~qiLllSATl~~-~v~~l~------------------------------------~~~l~~~~~i~i~~~d--~l~~~~~ 675 (1134)
..+++||||+.. ...++. ..++ .+..+.....+ .......
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~ 256 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPD 256 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCS
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCC
Confidence 568999999632 122111 1111 11111100000 0000000
Q ss_pred eeeEEEec---------------------------------------------------------chhHHHHHHHHHHHH
Q 047890 676 ITQHVEVV---------------------------------------------------------PQMEKERRLQQILRA 698 (1134)
Q Consensus 676 i~~~~~~v---------------------------------------------------------~~~ek~~~L~~llk~ 698 (1134)
.......+ ....|...+.++++.
T Consensus 257 ~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 257 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHH
Confidence 00111111 112233344455544
Q ss_pred H-hcCCEEEEEeCcHHHHHHHHHHhcC--CCcEEEecCCCChhHHHHHHHHHhcC-CCC-eeeecccceeccccCcceEE
Q 047890 699 Q-ERGSRVIIFCSTKRLCDQLARSIGR--NFGAIAIHGDKSQGERDWVLNQFRSG-KSP-ILVATDVAARGLDIKDIRVV 773 (1134)
Q Consensus 699 ~-~~~~kvLVF~nT~~~ae~La~~L~~--~~~v~~LhG~ms~~eR~~il~~FrsG-e~~-VLVATdvl~~GLDIp~v~~V 773 (1134)
. ..+.++||||+++..++.|++.|.+ ++.+..+||+++.++|.+++++|+++ +++ |||+|+++++|||++.+++|
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 3 4578999999999999999999965 67889999999999999999999998 565 78999999999999999999
Q ss_pred EeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhc
Q 047890 774 INYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGAN 824 (1134)
Q Consensus 774 I~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~ 824 (1134)
|++|+||++..|+|++||++|.|+++.|++|..-....+.+.+.+.++.+.
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~ 467 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 467 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCS
T ss_pred EEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999888766654444455566666665544
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.1e-35 Score=352.06 Aligned_cols=285 Identities=17% Similarity=0.195 Sum_probs=192.1
Q ss_pred HHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCC
Q 047890 490 IALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPK 569 (1134)
Q Consensus 490 ~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~ 569 (1134)
.+++++++|++++||||||++|+++++..+.. .+.++|||+||++||.|+++.++.+. +....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~------~~~~~lil~Ptr~La~Q~~~~l~~~~------v~~~~~~~-- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR------RRLRTLVLAPTRVVLSEMKEAFHGLD------VKFHTQAF-- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTTTSC------EEEESSCC--
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh------cCCeEEEEcchHHHHHHHHHHHhcCC------eEEecccc--
Confidence 35788999999999999999999998876653 45789999999999999999887542 22111110
Q ss_pred chhHHhhcCCCcEEEeChHHHHHHHH--------hcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhC-CCCceEEEE
Q 047890 570 GPQLRELDQGADIVVATPGRLNDILE--------MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEM-PPHRQTLMY 640 (1134)
Q Consensus 570 ~~~l~~l~~~~dIIVaTPerL~~lL~--------~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l-~~~~qiLll 640 (1134)
-+|+||+++++++. .....+.++++|||||||++ +..+...+..+...+ ....++|+|
T Consensus 70 ------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (440)
T 1yks_A 70 ------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILM 136 (440)
T ss_dssp ------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred ------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEE
Confidence 02555544433222 12234789999999999998 322222222222222 357899999
Q ss_pred eccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHH
Q 047890 641 TATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLAR 720 (1134)
Q Consensus 641 SATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~ 720 (1134)
|||++..+..+.... .++ ..+ ...+........+..+. ..+.++||||++++.++.+++
T Consensus 137 SAT~~~~~~~~~~~~--~~~-~~~---------------~~~~~~~~~~~~~~~l~---~~~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 137 TATPPGTSDEFPHSN--GEI-EDV---------------QTDIPSEPWNTGHDWIL---ADKRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp CSSCTTCCCSSCCCS--SCE-EEE---------------ECCCCSSCCSSSCHHHH---HCCSCEEEECSCHHHHHHHHH
T ss_pred eCCCCchhhhhhhcC--CCe-eEe---------------eeccChHHHHHHHHHHH---hcCCCEEEEeCCHHHHHHHHH
Confidence 999987654333211 000 000 00011111111122222 236799999999999999999
Q ss_pred HhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe-------------------ecCCC
Q 047890 721 SIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN-------------------YDFPN 780 (1134)
Q Consensus 721 ~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~-------------------~d~P~ 780 (1134)
.|.+ ++.+..+|| ++|+++++.|++|+++|||||+++++||||+ +++||+ ++.|.
T Consensus 196 ~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~ 270 (440)
T 1yks_A 196 SLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRI 270 (440)
T ss_dssp HHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEEC
T ss_pred HHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccccc
Confidence 9954 678999999 4688999999999999999999999999999 999986 88999
Q ss_pred ChhhHHHhhhccCcC-CCcceeEEEe---cccchHHHHHHHHHHHhhcCCC
Q 047890 781 GVEDYVHRIGRTGRA-GATGVAHTFF---SEQDSKYAADLVKVLEGANQHV 827 (1134)
Q Consensus 781 s~~~yiQRiGRagR~-GqkG~~ii~~---~~~d~~~~~~l~k~L~~~~~~l 827 (1134)
+.++|+||+||+||. +++|.|++|+ ++.+...+..+.+.+.....++
T Consensus 271 ~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l 321 (440)
T 1yks_A 271 SASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEV 321 (440)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCC
T ss_pred CHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccc
Confidence 999999999999998 6899999996 5666666666655554443333
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.5e-35 Score=366.52 Aligned_cols=305 Identities=20% Similarity=0.224 Sum_probs=211.2
Q ss_pred HHHHHHcCCC-----CCCHHHH-----HHHHHHH------cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEE
Q 047890 469 VASMHSAGFS-----SPTPIQA-----QTWPIAL------QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTV 532 (1134)
Q Consensus 469 l~~l~~~Gf~-----~prpiQ~-----eaI~~il------~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kv 532 (1134)
+.+|+..||. +||++|+ ++|+.++ +++++|++++||||||++|+++++..+.. .+.++
T Consensus 200 ~~~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------~~~~~ 273 (673)
T 2wv9_A 200 IIGLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------KRLRT 273 (673)
T ss_dssp EEEEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH------TTCCE
T ss_pred eEEeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcE
Confidence 3456667777 8999999 9999888 89999999999999999999998876553 45789
Q ss_pred EEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcch
Q 047890 533 LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA 612 (1134)
Q Consensus 533 LVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEA 612 (1134)
|||+||++||.|+++.++.+. +. ...+... .....+.-+.+.+...+...+.. ...+.++++||||||
T Consensus 274 lilaPTr~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l~lvViDEa 341 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMS-PLRVPNYNLFVMDEA 341 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHS-SSCCCCCSEEEEEST
T ss_pred EEEccHHHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhc-ccccccceEEEEeCC
Confidence 999999999999999888652 11 1111000 00011123344454555443333 256789999999999
Q ss_pred hhhhccCchHHHHHHHHhC-CCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHH
Q 047890 613 DRMLDMGFEPQIRKIVNEM-PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERR 691 (1134)
Q Consensus 613 Hrll~~gf~~~i~~IL~~l-~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~ 691 (1134)
|++ +..+...+..+...+ ....++|+||||++..+.++.... .++ +.+.. .+........
T Consensus 342 H~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~~--~~i-~~v~~---------------~~~~~~~~~~ 402 (673)
T 2wv9_A 342 HFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDTN--SPV-HDVSS---------------EIPDRAWSSG 402 (673)
T ss_dssp TCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCS--SCE-EEEEC---------------CCCSSCCSSC
T ss_pred ccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcccC--Cce-EEEee---------------ecCHHHHHHH
Confidence 997 211222222222222 267899999999986644332210 010 11100 0011111111
Q ss_pred HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcc
Q 047890 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDI 770 (1134)
Q Consensus 692 L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v 770 (1134)
+..++ ..+.++||||++++.++.+++.|.+ ++.+..+|+ ++|+++++.|++|+++|||||+++++||||+ +
T Consensus 403 l~~l~---~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v 474 (673)
T 2wv9_A 403 FEWIT---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-A 474 (673)
T ss_dssp CHHHH---SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-C
T ss_pred HHHHH---hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-C
Confidence 22222 2578999999999999999999965 678999999 4899999999999999999999999999999 9
Q ss_pred eEEEe--------------------ecCCCChhhHHHhhhccCcC-CCcceeEEEe---cccchHHHHHHHH
Q 047890 771 RVVIN--------------------YDFPNGVEDYVHRIGRTGRA-GATGVAHTFF---SEQDSKYAADLVK 818 (1134)
Q Consensus 771 ~~VI~--------------------~d~P~s~~~yiQRiGRagR~-GqkG~~ii~~---~~~d~~~~~~l~k 818 (1134)
++||+ |++|.+.++|+||+||+||. +++|.|++|+ ...+...+..+..
T Consensus 475 ~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~ 546 (673)
T 2wv9_A 475 SRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEA 546 (673)
T ss_dssp SEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred cEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHH
Confidence 99997 56889999999999999999 7899999996 4555544444433
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.7e-33 Score=344.38 Aligned_cols=313 Identities=18% Similarity=0.241 Sum_probs=193.7
Q ss_pred CCCCHHHHHHHHHHHc----C-CCEEEEccCCCchhHHHHHHHHHHHHHhc--CCCCCCCEEEEEcccHHHHHHHH-HHH
Q 047890 478 SSPTPIQAQTWPIALQ----G-RDIVAIAKTGSGKTLGYLIPAFILLRQLH--NNPRNGPTVLVLAPTRELATQIQ-DEA 549 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~----g-rdvLl~ApTGSGKTla~llpal~~L~~~~--~~~~~g~kvLVLvPTreLa~Q~~-~el 549 (1134)
..|+++|.+||+.+++ + +++|++++||+|||++++.++..++.... .......++|||||+++|+.||+ +++
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4699999999999986 4 66999999999999998776666655321 11125679999999999999999 777
Q ss_pred HHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHH----hcccCCCCeEEEEEcchhhhhccCchHHHH
Q 047890 550 NKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILE----MKKIDFGQVSLLVLDEADRMLDMGFEPQIR 625 (1134)
Q Consensus 550 ~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~----~~~l~l~~l~lVVIDEAHrll~~gf~~~i~ 625 (1134)
+.|+. .+..+.++ ......+|+|+|+++|...+. ...+....+++|||||||++.... ...+.
T Consensus 257 ~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 77643 23333322 123457999999999988764 334556789999999999987642 24566
Q ss_pred HHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcc----c--------------------------c
Q 047890 626 KIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAAN----K--------------------------A 675 (1134)
Q Consensus 626 ~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~----~--------------------------~ 675 (1134)
.++..++ ..++|+||||+..........++..++. .....+.+... . .
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIY-TYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSE-EECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceE-ecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 7777765 3569999999764332222222222111 00000000000 0 0
Q ss_pred eeeEEEecchhH-------HH----HHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCCC---------cEEEecCCC
Q 047890 676 ITQHVEVVPQME-------KE----RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRNF---------GAIAIHGDK 735 (1134)
Q Consensus 676 i~~~~~~v~~~e-------k~----~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~~---------~v~~LhG~m 735 (1134)
+..........+ +. ..|..+++......++||||++++.|+.|++.|.+.. .+..+||++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 000000000000 01 1233334444456899999999999999999985421 277889987
Q ss_pred ChhHHHHHHHHHhcCCCC---eeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCC--cceeEEEec
Q 047890 736 SQGERDWVLNQFRSGKSP---ILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGA--TGVAHTFFS 806 (1134)
Q Consensus 736 s~~eR~~il~~FrsGe~~---VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~Gq--kG~~ii~~~ 806 (1134)
+. +|.+++++|++++.+ |||||+++++|||++++++||+++++++...|+|++||++|.+. .+..+++++
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 64 799999999998866 88899999999999999999999999999999999999999875 334444444
No 50
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6.9e-33 Score=356.32 Aligned_cols=335 Identities=17% Similarity=0.160 Sum_probs=231.5
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 478 SSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
.+|+|||.+++..++.. .++||+++||+|||+++++.+..++... ...++|||||+ +|+.||.+++.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-----~~~rvLIVvP~-sLl~Qw~~E~~~~f-- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-----AAERVLIIVPE-TLQHQWLVEMLRRF-- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-----SCCCEEEECCT-TTHHHHHHHHHHHS--
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEeCH-HHHHHHHHHHHHHh--
Confidence 46999999999999875 4899999999999999988877766531 23479999999 99999999997765
Q ss_pred CCCceEEecCCCCCchhHH--hhcCCCcEEEeChHHHHHHHH-hcccCCCCeEEEEEcchhhhhccCchH-HHHHHHHhC
Q 047890 556 SRLSCTCLYGGAPKGPQLR--ELDQGADIVVATPGRLNDILE-MKKIDFGQVSLLVLDEADRMLDMGFEP-QIRKIVNEM 631 (1134)
Q Consensus 556 ~~i~v~~l~GG~~~~~~l~--~l~~~~dIIVaTPerL~~lL~-~~~l~l~~l~lVVIDEAHrll~~gf~~-~i~~IL~~l 631 (1134)
++.+.++.++........ ......+|||+|++.|..... ...+...++++|||||||++.+..... ...+++..+
T Consensus 224 -~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 224 -NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp -CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred -CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 345555443321111000 122347999999998864321 122345678999999999997654321 122233332
Q ss_pred -CCCceEEEEeccCch----hHHHHHH----------------------------hhccCC-------------e-----
Q 047890 632 -PPHRQTLMYTATWPK----DVRKIAS----------------------------DLLVNP-------------V----- 660 (1134)
Q Consensus 632 -~~~~qiLllSATl~~----~v~~l~~----------------------------~~l~~~-------------~----- 660 (1134)
.....+|+||||+.. ++..++. .++... .
T Consensus 303 ~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~ 382 (968)
T 3dmq_A 303 AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDI 382 (968)
T ss_dssp HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCS
T ss_pred hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhh
Confidence 234569999999531 1111110 000000 0
Q ss_pred ---eeeec-----------------------------c-chhhhc--ccceeeEE-------------------------
Q 047890 661 ---QVNIG-----------------------------N-VDELAA--NKAITQHV------------------------- 680 (1134)
Q Consensus 661 ---~i~i~-----------------------------~-~d~l~~--~~~i~~~~------------------------- 680 (1134)
...+. . ...+.. ...+....
T Consensus 383 ~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (968)
T 3dmq_A 383 EPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAED 462 (968)
T ss_dssp STTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGG
T ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHH
Confidence 00000 0 000000 00000000
Q ss_pred --------------------EecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC--CCcEEEecCCCChh
Q 047890 681 --------------------EVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR--NFGAIAIHGDKSQG 738 (1134)
Q Consensus 681 --------------------~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~--~~~v~~LhG~ms~~ 738 (1134)
..+....|...|..+++. ..+.++||||+++..++.|++.|.. ++.+..+||+|+..
T Consensus 463 ~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 463 RARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 112233456667777765 4578999999999999999999974 78899999999999
Q ss_pred HHHHHHHHHhcCC--CCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHH
Q 047890 739 ERDWVLNQFRSGK--SPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADL 816 (1134)
Q Consensus 739 eR~~il~~FrsGe--~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l 816 (1134)
+|+++++.|++|+ ++|||||+++++|||++++++||+||+||++..|+|++||++|.|+++.|++|+...+......+
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i 621 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVL 621 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHH
Confidence 9999999999998 99999999999999999999999999999999999999999999999988888766555555556
Q ss_pred HHHHHh
Q 047890 817 VKVLEG 822 (1134)
Q Consensus 817 ~k~L~~ 822 (1134)
.+.+.+
T Consensus 622 ~~~~~~ 627 (968)
T 3dmq_A 622 VRWYHE 627 (968)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665543
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.1e-34 Score=349.88 Aligned_cols=278 Identities=22% Similarity=0.263 Sum_probs=208.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.+..+|+++++.+..++++|++|+||||||++|+++++. .+.++|||+||++||.|+++.+.+.. ++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----------~g~~vLVl~PTReLA~Qia~~l~~~~---g~ 283 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----------QGYKVLVLNPSVAATLGFGAYMSKAH---GI 283 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH----------TTCCEEEEESCHHHHHHHHHHHHHHH---SC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH----------CCCeEEEEcchHHHHHHHHHHHHHHh---CC
Confidence 345667777777778899999999999999998887654 34589999999999999999887654 23
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCce--
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ-- 636 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~q-- 636 (1134)
.+...+++.. +..+++|+|+||++| +....+.+.++++||||||| +++.+|...+..+++.++...+
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSE
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCce
Confidence 4555565532 345689999999998 45667788899999999996 5667788888889998877666
Q ss_pred EEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHH
Q 047890 637 TLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCD 716 (1134)
Q Consensus 637 iLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae 716 (1134)
++++|||++..+. ...+....+... ....+ ........ + .....+++||||++++.++
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~~~----~~~~i----~~~~~~~~-------l-~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVALS----NTGEI----PFYGKAIP-------I-EAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEECB----SCSSE----EETTEEEC-------G-GGSSSSEEEEECSCHHHHH
T ss_pred EEEECCCCCcccc------cCCcceEEEeec----ccchh----HHHHhhhh-------h-hhccCCcEEEEeCCHHHHH
Confidence 7788999886422 011111111000 00000 00000000 0 1125689999999999999
Q ss_pred HHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEE----------eec--------
Q 047890 717 QLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVI----------NYD-------- 777 (1134)
Q Consensus 717 ~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI----------~~d-------- 777 (1134)
.|++.|.+ ++.+..+||++++++ |+++..+|||||+++++||||+ +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 99999965 688999999999875 4567779999999999999996 99988 677
Q ss_pred ---CCCChhhHHHhhhccCcCCCcceeEEEecccchHH
Q 047890 778 ---FPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKY 812 (1134)
Q Consensus 778 ---~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~ 812 (1134)
.|.+.++|+||+||+|| +++|. ++|+.+.+...
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 88888766543
No 52
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8e-33 Score=347.58 Aligned_cols=330 Identities=17% Similarity=0.229 Sum_probs=234.0
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG-RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g-rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
+.++.+....++.+...+ ..|+++|+++|..++.+ +++|++++||+|||+ +++++....... ...+.++||++|
T Consensus 74 f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~--~~~g~~ilvl~P 148 (773)
T 2xau_A 74 FTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP--HLENTQVACTQP 148 (773)
T ss_dssp TTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG--GGGTCEEEEEES
T ss_pred ccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc--cCCCceEEecCc
Confidence 445566667777777777 78999999999888865 579999999999998 455553222111 112568999999
Q ss_pred cHHHHHHHHHHHHHhcc-CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh-h
Q 047890 538 TRELATQIQDEANKFGR-SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR-M 615 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~-~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr-l 615 (1134)
+++|+.|+++.+.+... .....+.... ... .......+|+|+|++.|.+.+... ..+.++++|||||+|. .
T Consensus 149 ~r~La~q~~~~l~~~~~~~v~~~vG~~i---~~~---~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ 221 (773)
T 2xau_A 149 RRVAAMSVAQRVAEEMDVKLGEEVGYSI---RFE---NKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERT 221 (773)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTTTEEEEE---TTE---EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCC
T ss_pred hHHHHHHHHHHHHHHhCCchhheeccee---ccc---cccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccc
Confidence 99999999987765432 2222221111 000 112245789999999999877653 4588999999999995 5
Q ss_pred hccCc-hHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHH-HHHH
Q 047890 616 LDMGF-EPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKE-RRLQ 693 (1134)
Q Consensus 616 l~~gf-~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~-~~L~ 693 (1134)
++..+ ...+..++.. .+..++|+||||++. ..+.. ++.+...+.+.... ..+..++......+.. ..+.
T Consensus 222 ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~-----~pv~~~~~~~~~~~~~~~~l~ 292 (773)
T 2xau_A 222 LATDILMGLLKQVVKR-RPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT-----YPVELYYTPEFQRDYLDSAIR 292 (773)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC-----CCEEEECCSSCCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHh-CCCceEEEEeccccH--HHHHH-HhcCCCcccccCcc-----cceEEEEecCCchhHHHHHHH
Confidence 65332 2334444433 457889999999853 34443 34333333332111 1222222222222222 2333
Q ss_pred HHHHHH--hcCCEEEEEeCcHHHHHHHHHHhc------------CCCcEEEecCCCChhHHHHHHHHHh-----cCCCCe
Q 047890 694 QILRAQ--ERGSRVIIFCSTKRLCDQLARSIG------------RNFGAIAIHGDKSQGERDWVLNQFR-----SGKSPI 754 (1134)
Q Consensus 694 ~llk~~--~~~~kvLVF~nT~~~ae~La~~L~------------~~~~v~~LhG~ms~~eR~~il~~Fr-----sGe~~V 754 (1134)
.++... ....++||||+++++++.+++.|. .++.+..+|++++.++|.++++.|+ +|+++|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE
Confidence 333322 246899999999999999999886 3577999999999999999999999 999999
Q ss_pred eeecccceeccccCcceEEEeecC------------------CCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 755 LVATDVAARGLDIKDIRVVINYDF------------------PNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 755 LVATdvl~~GLDIp~v~~VI~~d~------------------P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
||||+++++||||++|++||++++ |.+.++|+||+||+||. ..|.|++|+++.+.
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999999999999877 88999999999999999 89999999976543
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.98 E-value=4.6e-33 Score=331.14 Aligned_cols=272 Identities=18% Similarity=0.206 Sum_probs=191.8
Q ss_pred HHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCC
Q 047890 488 WPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGA 567 (1134)
Q Consensus 488 I~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~ 567 (1134)
...+..++++|++++||||||++|+++++..+.. .+.++|||+||++|+.|+++.++.+ .+.......
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~------~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~ 82 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ------QRLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSAV 82 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH------TTCCEEEEECSHHHHHHHHHHTTTS------CEEECC---
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEECchHHHHHHHHHHhcCc------eEeEEeccc
Confidence 4445678899999999999999999999876653 4578999999999999999988732 222221111
Q ss_pred CCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh-----hhccCchHHHHHHHHhCCCCceEEEEec
Q 047890 568 PKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR-----MLDMGFEPQIRKIVNEMPPHRQTLMYTA 642 (1134)
Q Consensus 568 ~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr-----ll~~gf~~~i~~IL~~l~~~~qiLllSA 642 (1134)
.. .-..+..|.++|.+.|...+.. ...+.++++|||||||+ ++..+|...+ + .....++|+|||
T Consensus 83 ~~-----~~t~~~~i~~~~~~~l~~~l~~-~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~---~--~~~~~~~il~SA 151 (459)
T 2z83_A 83 QR-----EHQGNEIVDVMCHATLTHRLMS-PNRVPNYNLFVMDEAHFTDPASIAARGYIATK---V--ELGEAAAIFMTA 151 (459)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHS-CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---H--HTTSCEEEEECS
T ss_pred cc-----CCCCCcEEEEEchHHHHHHhhc-cccccCCcEEEEECCccCCchhhHHHHHHHHH---h--ccCCccEEEEEc
Confidence 10 0122345778888887665543 35678999999999998 4443332221 1 136789999999
Q ss_pred cCchhHHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHh
Q 047890 643 TWPKDVRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSI 722 (1134)
Q Consensus 643 Tl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L 722 (1134)
|++.++..+... ..++.. +.. .+.... ...+..++.. ..+++||||++++.++.|++.|
T Consensus 152 T~~~~~~~~~~~--~~pi~~-~~~---------------~~~~~~-~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHD-LQD---------------EIPDRA-WSSGYEWITE--YAGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEE-EEC---------------CCCSSC-CSSCCHHHHH--CCSCEEEECSCHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEE-ecc---------------cCCcch-hHHHHHHHHh--cCCCEEEEeCChHHHHHHHHHH
Confidence 998764332221 111111 100 000000 0001122222 3679999999999999999999
Q ss_pred cC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEe--------------------ecCCCC
Q 047890 723 GR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVIN--------------------YDFPNG 781 (1134)
Q Consensus 723 ~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~--------------------~d~P~s 781 (1134)
.+ ++.+..+|++ +|.++++.|++|+++|||||+++++||||++ ++||+ |+.|.+
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 54 6889999984 6778999999999999999999999999999 99998 779999
Q ss_pred hhhHHHhhhccCcCCC-cceeEEEeccc
Q 047890 782 VEDYVHRIGRTGRAGA-TGVAHTFFSEQ 808 (1134)
Q Consensus 782 ~~~yiQRiGRagR~Gq-kG~~ii~~~~~ 808 (1134)
.++|+||+||+||.|. +|.|++|+...
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999997 99999999875
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.98 E-value=2.2e-32 Score=322.82 Aligned_cols=270 Identities=16% Similarity=0.133 Sum_probs=186.3
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ 572 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~ 572 (1134)
+++++|++++||||||++|+++++..+.. .+.++|||+||++|+.|+++.++ ++.+....+....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~--- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS--- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc---
Confidence 36899999999999999999888854432 45689999999999999998775 2344444443211
Q ss_pred HHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHh-CCCCceEEEEeccCchhHHHH
Q 047890 573 LRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE-MPPHRQTLMYTATWPKDVRKI 651 (1134)
Q Consensus 573 l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~-l~~~~qiLllSATl~~~v~~l 651 (1134)
....+..+.++|.+.+...+.. ...+.++++|||||+|++ +..+......+... .....++|+||||++..+.++
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred --cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1112345677788888766554 556889999999999996 33333333333332 246789999999998653322
Q ss_pred HHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEE
Q 047890 652 ASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIA 730 (1134)
Q Consensus 652 ~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~ 730 (1134)
... +...+.+.. .+... +...+..++.. ...++||||++++.++.+++.|.+ ++.+..
T Consensus 142 ~~~---~~~i~~~~~---------------~~~~~-~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 142 PPS---NSPIIDEET---------------RIPDK-AWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CCC---SSCCEEEEC---------------CCCSS-CCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCC---CCceeeccc---------------cCCHH-HHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 211 100011100 00000 00111122222 356899999999999999999954 678999
Q ss_pred ecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcce----------------EEEeecCCCChhhHHHhhhccCc
Q 047890 731 IHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIR----------------VVINYDFPNGVEDYVHRIGRTGR 794 (1134)
Q Consensus 731 LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~----------------~VI~~d~P~s~~~yiQRiGRagR 794 (1134)
+||+ +|++++++|++|+++|||||+++++|||+|... +||+++.|.+.++|+||+||+||
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR 276 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR 276 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccCC
Confidence 9986 678899999999999999999999999999333 26788999999999999999999
Q ss_pred CCCcceeEEEec
Q 047890 795 AGATGVAHTFFS 806 (1134)
Q Consensus 795 ~GqkG~~ii~~~ 806 (1134)
.|..+.|++++.
T Consensus 277 ~g~~~~~~~~~~ 288 (431)
T 2v6i_A 277 NPEKLGDIYAYS 288 (431)
T ss_dssp CTTCCCCEEEEC
T ss_pred CCCCCCeEEEEc
Confidence 986554444443
No 55
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=3.3e-31 Score=288.07 Aligned_cols=209 Identities=53% Similarity=0.913 Sum_probs=189.4
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcC-CCCCCCEEEEEc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHN-NPRNGPTVLVLA 536 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~-~~~~g~kvLVLv 536 (1134)
.+.++.+...+++.+.+.||.+|+++|.++|+.++.++++|++++||+|||++|++|++..+..... ....++++|||+
T Consensus 30 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~ 109 (242)
T 3fe2_A 30 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA 109 (242)
T ss_dssp STTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEEC
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEe
Confidence 3455667788899999999999999999999999999999999999999999999999988764322 123577899999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 537 PTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
||++|+.|+++.+++++...++.+.+++|+.........+..+++|+|+||++|.+++....+.+.++++|||||||+++
T Consensus 110 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~ 189 (242)
T 3fe2_A 110 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRML 189 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHh
Confidence 99999999999999998888899999999998888888888889999999999999998888889999999999999999
Q ss_pred ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeecc
Q 047890 617 DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGN 666 (1134)
Q Consensus 617 ~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~ 666 (1134)
+++|...+..++..++...|+++||||++.+++++++.++.+++.+.+..
T Consensus 190 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 190 DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999998887754
No 56
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-30 Score=325.03 Aligned_cols=334 Identities=16% Similarity=0.222 Sum_probs=233.2
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWPIAL----QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~il----~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+|+++|.++|.+++ .+.++||+++||+|||++++..+..++.... ....+||||| .+|+.||.++|.+|+.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~----~~~~~LIV~P-~sll~qW~~E~~~~~p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR----QNGPHIIVVP-LSTMPAWLDTFEKWAP 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS----CCSCEEEECC-TTTHHHHHHHHHHHST
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC----CCCCEEEEEC-chHHHHHHHHHHHHCC
Confidence 59999999999887 6789999999999999998777665544322 3446899999 5899999999999974
Q ss_pred CCCCceEEecCCCCCchhHHh------------hcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchH
Q 047890 555 SSRLSCTCLYGGAPKGPQLRE------------LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEP 622 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~------------l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~ 622 (1134)
.+.+.+.+|.......+.. ....++|+|+|++.|..... .+....+++|||||||++.+. ..
T Consensus 311 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~--~s 384 (800)
T 3mwy_W 311 --DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNA--ES 384 (800)
T ss_dssp --TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCS--SS
T ss_pred --CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCc--hh
Confidence 3666666665443332221 12347899999999976432 233347899999999999764 34
Q ss_pred HHHHHHHhCCCCceEEEEeccCc----hhHHHHHHhhcc-----------------------------CCeeeeeccchh
Q 047890 623 QIRKIVNEMPPHRQTLMYTATWP----KDVRKIASDLLV-----------------------------NPVQVNIGNVDE 669 (1134)
Q Consensus 623 ~i~~IL~~l~~~~qiLllSATl~----~~v~~l~~~~l~-----------------------------~~~~i~i~~~d~ 669 (1134)
.+.+.+..+. ...+|+||||+- .++..++..+.. .+..+.....+.
T Consensus 385 ~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv 463 (800)
T 3mwy_W 385 SLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDV 463 (800)
T ss_dssp HHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGG
T ss_pred HHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhh
Confidence 5556666663 445799999951 111111111100 000000000000
Q ss_pred hhcccceeeEEEe-------------------------------------------------------------------
Q 047890 670 LAANKAITQHVEV------------------------------------------------------------------- 682 (1134)
Q Consensus 670 l~~~~~i~~~~~~------------------------------------------------------------------- 682 (1134)
..........+..
T Consensus 464 ~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~ 543 (800)
T 3mwy_W 464 EKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMT 543 (800)
T ss_dssp TTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CC
T ss_pred hhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccccc
Confidence 0000000000000
Q ss_pred --------cchhHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCC
Q 047890 683 --------VPQMEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKS 752 (1134)
Q Consensus 683 --------v~~~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~ 752 (1134)
+....|...|..++..+ ..+.++||||.....++.|...|. .++.+..|||+++.++|.++++.|++++.
T Consensus 544 ~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~ 623 (800)
T 3mwy_W 544 RENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDS 623 (800)
T ss_dssp SHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTC
T ss_pred HHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCC
Confidence 00122445566666655 356799999999999999999995 47889999999999999999999998655
Q ss_pred ---CeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhc
Q 047890 753 ---PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGAN 824 (1134)
Q Consensus 753 ---~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~ 824 (1134)
.|||+|.++++|||++.+++||+||++|++..++|++||++|.|++..|++|..-....+...+++.+..+.
T Consensus 624 ~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 624 NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred CceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999888877665555556666666655543
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=3e-30 Score=277.39 Aligned_cols=201 Identities=46% Similarity=0.832 Sum_probs=173.1
Q ss_pred cccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhc--CCCCCCCEEEEEcccH
Q 047890 462 VSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLH--NNPRNGPTVLVLAPTR 539 (1134)
Q Consensus 462 v~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~--~~~~~g~kvLVLvPTr 539 (1134)
+.+...+++.|.+.||.+|+++|.++|+.+++++++|++++||+|||++|+++++..+.... .....++++|||+||+
T Consensus 25 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~ 104 (228)
T 3iuy_A 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTR 104 (228)
T ss_dssp HTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSH
T ss_pred hccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCH
Confidence 34566789999999999999999999999999999999999999999999999887664321 1123567899999999
Q ss_pred HHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccC
Q 047890 540 ELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMG 619 (1134)
Q Consensus 540 eLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~g 619 (1134)
+|+.|++++++++. ..++.+.+++++.........+..+++|+|+||++|.+++....+.+.++++|||||||++++++
T Consensus 105 ~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 183 (228)
T 3iuy_A 105 ELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME 183 (228)
T ss_dssp HHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTT
T ss_pred HHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccc
Confidence 99999999999986 44688889999988877777788889999999999999998888889999999999999999999
Q ss_pred chHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeee
Q 047890 620 FEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVN 663 (1134)
Q Consensus 620 f~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~ 663 (1134)
|...+..++..+..+.|+|++|||++.++++++..++.++..+.
T Consensus 184 ~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 184 FEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred hHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999887664
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=8.1e-30 Score=279.13 Aligned_cols=208 Identities=37% Similarity=0.574 Sum_probs=187.5
Q ss_pred hHhhhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEE
Q 047890 453 AEVYRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTV 532 (1134)
Q Consensus 453 ~e~~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kv 532 (1134)
.+....+.++.+...+++.|...||.+|+++|.++|+.++.++++|++++||+|||++|+++++..+... ..+.++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~----~~~~~~ 114 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET----PQRLFA 114 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CCSSCE
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC----CCCceE
Confidence 3445678888899999999999999999999999999999999999999999999999999998876542 235689
Q ss_pred EEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh-cccCCCCeEEEEEcc
Q 047890 533 LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM-KKIDFGQVSLLVLDE 611 (1134)
Q Consensus 533 LVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~-~~l~l~~l~lVVIDE 611 (1134)
|||+||++|+.||++++++++...++.+.+++|+.........+..+++|+|+||++|.+++.. ..+.+.++++|||||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999988778899999999877777777778899999999999998875 456788999999999
Q ss_pred hhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeee
Q 047890 612 ADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNI 664 (1134)
Q Consensus 612 AHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i 664 (1134)
||++++++|...+..++..++...++|+||||++.+++++++.++.++..+.+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999989999999999999999999999999887765
No 59
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=8.6e-30 Score=268.72 Aligned_cols=201 Identities=32% Similarity=0.556 Sum_probs=180.3
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.+.++.+...+++.|.+.||.+|+++|.++++.+++++++|+.++||+|||++|+++++..+.. ...+.++|||+|
T Consensus 4 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~----~~~~~~~lil~P 79 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL----KKDNIQAMVIVP 79 (206)
T ss_dssp SGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT----TSCSCCEEEECS
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc----cCCCeeEEEEeC
Confidence 3566778889999999999999999999999999999999999999999999999998876532 124578999999
Q ss_pred cHHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhh
Q 047890 538 TRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll 616 (1134)
|++|+.||+++++++.... .+.+..++|+.........+...++|+|+||++|.+++....+.+.++++|||||||++.
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 159 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL 159 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHT
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhH
Confidence 9999999999999998766 688888898887777777777889999999999999998888888999999999999999
Q ss_pred ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeee
Q 047890 617 DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQV 662 (1134)
Q Consensus 617 ~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i 662 (1134)
+.+|...+..++..++...++|++|||++.++.++++.++.++..+
T Consensus 160 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 160 SQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999998899999999999999999999999887654
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=273.54 Aligned_cols=209 Identities=35% Similarity=0.549 Sum_probs=182.7
Q ss_pred hhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 047890 456 YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535 (1134)
Q Consensus 456 ~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVL 535 (1134)
...+.++.+...+++.|...||..|+++|.++++.++.++++|++++||+|||++|+++++..+.........+.++|||
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 34566778888999999999999999999999999999999999999999999999999998776533222356789999
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc-ccCCCCeEEEEEcchhh
Q 047890 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK-KIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 536 vPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~-~l~l~~l~lVVIDEAHr 614 (1134)
+||++|+.||++++++++...++.+.+++|+.........+ ..++|+|+||++|.+++... .+.+.++++|||||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999888788899999988776655554 56899999999999988654 46788999999999999
Q ss_pred hhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeec
Q 047890 615 MLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIG 665 (1134)
Q Consensus 615 ll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~ 665 (1134)
+++++|...+..++..++..+++|+||||++.+++++++.++.++..+.+.
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999998877653
No 61
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=7.2e-30 Score=278.91 Aligned_cols=210 Identities=47% Similarity=0.716 Sum_probs=183.8
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCC-----CCCCCEE
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNN-----PRNGPTV 532 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~-----~~~g~kv 532 (1134)
.+.++.+...+++.|...||.+|+++|.++|+.+++++++|++++||+|||++|+++++..+...... ...++++
T Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 103 (253)
T 1wrb_A 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKC 103 (253)
T ss_dssp SSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSE
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceE
Confidence 35566677778889999999999999999999999999999999999999999999999877642211 1235789
Q ss_pred EEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcch
Q 047890 533 LVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA 612 (1134)
Q Consensus 533 LVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEA 612 (1134)
|||+||++|+.||++++++++....+.+.+++|+.........+..+++|+|+||++|.+++....+.+.++++||||||
T Consensus 104 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 183 (253)
T 1wrb_A 104 LILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEA 183 (253)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETH
T ss_pred EEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCH
Confidence 99999999999999999999888788899999998888887888888999999999999999888888899999999999
Q ss_pred hhhhccCchHHHHHHHHhC--CC--CceEEEEeccCchhHHHHHHhhccCCeeeeeccc
Q 047890 613 DRMLDMGFEPQIRKIVNEM--PP--HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNV 667 (1134)
Q Consensus 613 Hrll~~gf~~~i~~IL~~l--~~--~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~ 667 (1134)
|++++++|...+..++..+ +. ..|+|+||||++.++.++++.++.++..+.+...
T Consensus 184 h~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 184 DRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp HHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 9999999999999999853 33 6789999999999999999999999888877543
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=5.2e-30 Score=274.01 Aligned_cols=203 Identities=34% Similarity=0.556 Sum_probs=180.4
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
+.++.+...+++.|.+.||.+|+++|.++++.+++++++|++++||+|||++|+++++..+.. ...+.++|||+||
T Consensus 6 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~----~~~~~~~lil~Pt 81 (219)
T 1q0u_A 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP----ERAEVQAVITAPT 81 (219)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT----TSCSCCEEEECSS
T ss_pred HhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh----CcCCceEEEEcCc
Confidence 556677888999999999999999999999999999999999999999999999998876542 1245789999999
Q ss_pred HHHHHHHHHHHHHhccCC----CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh
Q 047890 539 RELATQIQDEANKFGRSS----RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 539 reLa~Q~~~el~kl~~~~----~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr 614 (1134)
++|+.||+++++++.... .+.+.+++|+.........+...++|+|+||++|.+++....+.+.++++|||||||+
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 161 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL 161 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH
Confidence 999999999999987765 6788888888766555555666789999999999999988888889999999999999
Q ss_pred hhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeec
Q 047890 615 MLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIG 665 (1134)
Q Consensus 615 ll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~ 665 (1134)
+.+++|...+..++..++...++|++|||++.++.++++.++.++..+.+.
T Consensus 162 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 162 MLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred HhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 999999999999999999899999999999999999999999999877653
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=5e-30 Score=278.11 Aligned_cols=205 Identities=30% Similarity=0.493 Sum_probs=174.1
Q ss_pred hhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 047890 456 YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535 (1134)
Q Consensus 456 ~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVL 535 (1134)
...+.++.+...+++.|...||.+|+++|.++|+.++.++++|++++||+|||++|+++++..+.. ...+.++|||
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~----~~~~~~~lil 104 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI----EFKETQALVL 104 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT----TSCSCCEEEE
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh----cCCCceEEEE
Confidence 345677788899999999999999999999999999999999999999999999999998876532 1245689999
Q ss_pred cccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCC-CcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh
Q 047890 536 APTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQG-ADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 536 vPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~-~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr 614 (1134)
+||++|+.||++++++++...++.+..++++.........+..+ ++|+|+||++|.+++....+.+.++++|||||||+
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH
T ss_pred ECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH
Confidence 99999999999999999888788888889888776666666555 89999999999999988888889999999999999
Q ss_pred hhccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeee
Q 047890 615 MLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNI 664 (1134)
Q Consensus 615 ll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i 664 (1134)
+++++|...+..++..++...++|++|||++.++.++++.++.++..+.+
T Consensus 185 ~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999998887755
No 64
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=8.8e-30 Score=280.91 Aligned_cols=197 Identities=38% Similarity=0.600 Sum_probs=178.2
Q ss_pred cchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHH
Q 047890 464 ATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 464 v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~ 543 (1134)
+...+++.|...||.+|+++|.++++.++.++++|++++||+|||++|+++++..+.........+.++|||+||++|+.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 67888999999999999999999999999999999999999999999999999888764433345778999999999999
Q ss_pred HHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhc-ccCCCCeEEEEEcchhhhhccCchH
Q 047890 544 QIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMK-KIDFGQVSLLVLDEADRMLDMGFEP 622 (1134)
Q Consensus 544 Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~-~l~l~~l~lVVIDEAHrll~~gf~~ 622 (1134)
|+++++++++....+.+.+++|+.........+..+++|||+||++|.+++... .+.+.++++|||||||++++++|..
T Consensus 141 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~ 220 (262)
T 3ly5_A 141 QTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 220 (262)
T ss_dssp HHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHH
Confidence 999999999988888899999998877777777778999999999999988665 4678899999999999999999999
Q ss_pred HHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCe
Q 047890 623 QIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPV 660 (1134)
Q Consensus 623 ~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~ 660 (1134)
.+..++..++..+|+|+||||++.+++++++.++.++.
T Consensus 221 ~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 221 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999998876543
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=5.4e-30 Score=316.30 Aligned_cols=273 Identities=22% Similarity=0.207 Sum_probs=199.2
Q ss_pred HHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCC
Q 047890 489 PIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAP 568 (1134)
Q Consensus 489 ~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~ 568 (1134)
...++++++|++|+||||||+.+ +..+.. ....||++||++||.|+++.++++ ++.+.+++|+..
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~a----l~~l~~-------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~ 214 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHA----IQKYFS-------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEER 214 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHH----HHHHHH-------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCE
T ss_pred HHhcCCCEEEEEcCCCCCHHHHH----HHHHHh-------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCee
Confidence 34568899999999999999833 233322 124599999999999999999886 467888887754
Q ss_pred CchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCC-CCceEEEEeccCchh
Q 047890 569 KGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMP-PHRQTLMYTATWPKD 647 (1134)
Q Consensus 569 ~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~-~~~qiLllSATl~~~ 647 (1134)
... ..-....+++++|++.+. ....+++|||||||++++.++...+..++..+. ...+++++|||. +.
T Consensus 215 ~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~ 283 (677)
T 3rc3_A 215 VTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DL 283 (677)
T ss_dssp ECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HH
T ss_pred EEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HH
Confidence 310 000123678888875432 246789999999999999999999999988887 678899999994 33
Q ss_pred HHHHHHhhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CC
Q 047890 648 VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NF 726 (1134)
Q Consensus 648 v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~ 726 (1134)
+..+..... ....+.. ...... + .+ .... + ..+. ......||||++++.++.+++.|.+ ++
T Consensus 284 i~~l~~~~~-~~~~v~~--~~r~~~---l--~~--~~~~-----l-~~l~--~~~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 284 VMELMYTTG-EEVEVRD--YKRLTP---I--SV--LDHA-----L-ESLD--NLRPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp HHHHHHHHT-CCEEEEE--CCCSSC---E--EE--CSSC-----C-CSGG--GCCTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcC-CceEEEE--eeecch---H--HH--HHHH-----H-HHHH--hcCCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 444444332 2222111 000000 0 00 0000 0 0011 1123458899999999999999964 67
Q ss_pred cEEEecCCCChhHHHHHHHHHhc--CCCCeeeecccceeccccCcceEEEeecC--------------CCChhhHHHhhh
Q 047890 727 GAIAIHGDKSQGERDWVLNQFRS--GKSPILVATDVAARGLDIKDIRVVINYDF--------------PNGVEDYVHRIG 790 (1134)
Q Consensus 727 ~v~~LhG~ms~~eR~~il~~Frs--Ge~~VLVATdvl~~GLDIp~v~~VI~~d~--------------P~s~~~yiQRiG 790 (1134)
.+..+||+|+.++|.++++.|++ |+++|||||+++++|||| ++++||+++. |.+..+|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 89999999999999999999999 889999999999999999 9999999998 778999999999
Q ss_pred ccCcCCCc---ceeEEEec
Q 047890 791 RTGRAGAT---GVAHTFFS 806 (1134)
Q Consensus 791 RagR~Gqk---G~~ii~~~ 806 (1134)
|+||.|.. |.|++++.
T Consensus 425 RAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 425 RAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp TBTCTTSSCSSEEEEESST
T ss_pred CCCCCCCCCCCEEEEEEec
Confidence 99999965 56655543
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=3e-29 Score=264.53 Aligned_cols=203 Identities=40% Similarity=0.667 Sum_probs=180.5
Q ss_pred ccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 459 RHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 459 ~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
+.++.+...+++.+...||.+|+++|.++++.+++++++|++++||+|||++|+++++..+.... ....++++|||+|+
T Consensus 3 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-ERGRKPRALVLTPT 81 (207)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-CTTCCCSEEEECSS
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-ccCCCCcEEEEECC
Confidence 55677888899999999999999999999999999999999999999999999999887654211 12356789999999
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhcc
Q 047890 539 RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDM 618 (1134)
Q Consensus 539 reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~ 618 (1134)
++|+.||+++++++... +.+..++++.........+..+++|+|+||++|.+++....+.+.++++|||||||++.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999999765 6778888888877777777778999999999999999888888999999999999999999
Q ss_pred CchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeee
Q 047890 619 GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNI 664 (1134)
Q Consensus 619 gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i 664 (1134)
+|...+..++..++...++|++|||++.+++++++.++.++..+.+
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999989999999999999999999999998887654
No 67
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=2.6e-29 Score=271.06 Aligned_cols=203 Identities=31% Similarity=0.554 Sum_probs=178.3
Q ss_pred hhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 457 RQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 457 ~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
..+.++.+...+++.|.+.||.+|+++|.++|+.++.++++|++++||+|||++|+++++..+.. ...+.++|||+
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~----~~~~~~~lil~ 99 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL----ENLSTQILILA 99 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT----TSCSCCEEEEC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh----cCCCceEEEEe
Confidence 34666778888999999999999999999999999999999999999999999999998876532 12457899999
Q ss_pred ccHHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhh
Q 047890 537 PTRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 537 PTreLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrl 615 (1134)
||++|+.||++++++++... ++.+.+++|+.........+ ..++|+|+||++|.+++....+.+.++++|||||||++
T Consensus 100 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 178 (230)
T 2oxc_A 100 PTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 178 (230)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHh
Confidence 99999999999999997654 68888888887765555444 46899999999999999888888889999999999999
Q ss_pred hccC-chHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeee
Q 047890 616 LDMG-FEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNI 664 (1134)
Q Consensus 616 l~~g-f~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i 664 (1134)
++++ |...+..++..++...++|++|||++.++.+++..++.++..+.+
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 179 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred hcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9987 999999999999989999999999999999999999988877654
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.96 E-value=4.2e-29 Score=267.16 Aligned_cols=203 Identities=31% Similarity=0.510 Sum_probs=173.4
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.+.++.+...+++.++..||.+|+++|.++++.++.++++|++++||+|||++|+++++..+.. ...+.++|||+|
T Consensus 15 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~----~~~~~~~lil~P 90 (224)
T 1qde_A 15 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT----SVKAPQALMLAP 90 (224)
T ss_dssp CGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT----TCCSCCEEEECS
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc----cCCCceEEEEEC
Confidence 4556678888999999999999999999999999999999999999999999999998876532 124678999999
Q ss_pred cHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 538 TRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
+++|+.||+++++++....++.+..++|+.........+.. ++|+|+||++|.+++....+.+.++++|||||||++.+
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 169 (224)
T 1qde_A 91 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS 169 (224)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhh
Confidence 99999999999999988888888899988776655555444 89999999999999988888889999999999999999
Q ss_pred cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeec
Q 047890 618 MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIG 665 (1134)
Q Consensus 618 ~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~ 665 (1134)
++|...+..++..++...++|++|||++.++.++++.++.++..+.+.
T Consensus 170 ~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 170 SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp TTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999988877653
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=9.4e-29 Score=263.98 Aligned_cols=202 Identities=26% Similarity=0.492 Sum_probs=176.8
Q ss_pred hccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 458 QRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 458 ~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.+.++.+...+++.|.+.||.+|+++|.++++.+++++++|++++||+|||++|+++++..+.. .....++|||+|
T Consensus 15 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~----~~~~~~~lil~P 90 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP----VTGQVSVLVMCH 90 (220)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC----CTTCCCEEEECS
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc----cCCCEEEEEEeC
Confidence 3666778889999999999999999999999999999999999999999999999998876531 123568999999
Q ss_pred cHHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhh
Q 047890 538 TRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 538 TreLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrl 615 (1134)
|++|+.||+++++++.... ++.+.+++|+.........+.. .++|+|+||++|.+++....+.+.++++|||||||++
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 91 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHH
Confidence 9999999999999998765 6888889988876666555544 4699999999999999888888899999999999999
Q ss_pred hc-cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeee
Q 047890 616 LD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVN 663 (1134)
Q Consensus 616 l~-~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~ 663 (1134)
++ .+|...+..++..++...++|++|||++.+++++++.++.++..+.
T Consensus 171 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 171 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred hcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 87 4788889999999988999999999999999999999998887664
No 70
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.96 E-value=6.4e-29 Score=279.68 Aligned_cols=203 Identities=26% Similarity=0.419 Sum_probs=177.0
Q ss_pred hhhccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 047890 456 YRQRHEVSATLPRVASMHSAGFSSPTPIQAQTWPIALQG--RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVL 533 (1134)
Q Consensus 456 ~~~~~ev~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~g--rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvL 533 (1134)
...|.++.+...++..|..+||.+||++|.++|+.++.+ +++|++++||||||++|++|++..+.. ....+++|
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~----~~~~~~~l 166 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP----ANKYPQCL 166 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT----TSCSCCEE
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc----cCCCceEE
Confidence 445677788899999999999999999999999999998 999999999999999999999876532 23466899
Q ss_pred EEcccHHHHHHHHHHHHHhccCC-CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHh-cccCCCCeEEEEEcc
Q 047890 534 VLAPTRELATQIQDEANKFGRSS-RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEM-KKIDFGQVSLLVLDE 611 (1134)
Q Consensus 534 VLvPTreLa~Q~~~el~kl~~~~-~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~-~~l~l~~l~lVVIDE 611 (1134)
||+||++||.|+++.+++++... .+.+.+++++....... ...++|||+||++|++++.. ..+.+.++++|||||
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 99999999999999999998654 57788888876543322 45689999999999999965 567789999999999
Q ss_pred hhhhhc-cCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhccCCeeeeec
Q 047890 612 ADRMLD-MGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIG 665 (1134)
Q Consensus 612 AHrll~-~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~ 665 (1134)
||+|++ .+|...+..|+..++..+|+|+||||++.++..++..++.++..|.+.
T Consensus 244 ad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999998 689999999999999999999999999999999999999999887663
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=1.1e-27 Score=307.22 Aligned_cols=313 Identities=17% Similarity=0.160 Sum_probs=208.1
Q ss_pred CCCCHHHHHHHHHHHc--------------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHH
Q 047890 478 SSPTPIQAQTWPIALQ--------------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~--------------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~ 543 (1134)
..||++|.+||+.+++ ++++|++++||||||+++ ++++.++.. .....++|||||+++|+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~----~~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE----LDFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT----CTTCCEEEEEECGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh----cCCCceEEEEeCcHHHHH
Confidence 3599999999999886 368999999999999997 444444432 123469999999999999
Q ss_pred HHHHHHHHhccCCCCceEEecCCCCCchhHHhhc-CCCcEEEeChHHHHHHHHhcc--cCCCCeEEEEEcchhhhhccCc
Q 047890 544 QIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELD-QGADIVVATPGRLNDILEMKK--IDFGQVSLLVLDEADRMLDMGF 620 (1134)
Q Consensus 544 Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~-~~~dIIVaTPerL~~lL~~~~--l~l~~l~lVVIDEAHrll~~gf 620 (1134)
||.+++.+|... .+.++.+.......+. ...+|||+|+++|..++.... ..+..+.+|||||||++..
T Consensus 345 Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--- 415 (1038)
T 2w00_A 345 QTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--- 415 (1038)
T ss_dssp HHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---
T ss_pred HHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---
Confidence 999999998643 1234444444444453 468999999999998876432 2356789999999999774
Q ss_pred hHHHHHHHHhCCCCceEEEEeccCchh--------HHHHHHhhc-------------cCCeeeeecc----chhhh----
Q 047890 621 EPQIRKIVNEMPPHRQTLMYTATWPKD--------VRKIASDLL-------------VNPVQVNIGN----VDELA---- 671 (1134)
Q Consensus 621 ~~~i~~IL~~l~~~~qiLllSATl~~~--------v~~l~~~~l-------------~~~~~i~i~~----~d~l~---- 671 (1134)
...+..|+..++ +.++|+||||+... ...+....+ ..+..+.... .....
T Consensus 416 ~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 416 GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCC
T ss_pred hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccccc
Confidence 334556666664 46899999997532 222221111 1111111110 00000
Q ss_pred --cccceeeEEEecchhHHHHHHHHHHHHHh----------cCCEEEEEeCcHHHHHHHHHHhcCC-------------C
Q 047890 672 --ANKAITQHVEVVPQMEKERRLQQILRAQE----------RGSRVIIFCSTKRLCDQLARSIGRN-------------F 726 (1134)
Q Consensus 672 --~~~~i~~~~~~v~~~ek~~~L~~llk~~~----------~~~kvLVF~nT~~~ae~La~~L~~~-------------~ 726 (1134)
....+.....+........++..+++... .+.++||||+++..|..+++.|.+. +
T Consensus 495 ~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~ 574 (1038)
T 2w00_A 495 EKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPL 574 (1038)
T ss_dssp HHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccC
Confidence 00000000000111111222333444321 2458999999999999999888431 3
Q ss_pred cE-EEecCC----------C----------Ch-----------------------------hHHHHHHHHHhcCCCCeee
Q 047890 727 GA-IAIHGD----------K----------SQ-----------------------------GERDWVLNQFRSGKSPILV 756 (1134)
Q Consensus 727 ~v-~~LhG~----------m----------s~-----------------------------~eR~~il~~FrsGe~~VLV 756 (1134)
.+ +++|++ + +. .+|.+++++|++++++|||
T Consensus 575 k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILI 654 (1038)
T 2w00_A 575 RIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLI 654 (1038)
T ss_dssp CEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEE
T ss_pred cEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 44 455542 2 11 1478899999999999999
Q ss_pred ecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCc----ceeEEEec
Q 047890 757 ATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGAT----GVAHTFFS 806 (1134)
Q Consensus 757 ATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~Gqk----G~~ii~~~ 806 (1134)
+|+++.+|+|+|.+ .||++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 655 vvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 655 VVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp ESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999999999 678899999999999999999998753 55555554
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2e-28 Score=265.92 Aligned_cols=202 Identities=34% Similarity=0.528 Sum_probs=170.1
Q ss_pred cccchhHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH
Q 047890 462 VSATLPRVASMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL 541 (1134)
Q Consensus 462 v~v~~~~l~~l~~~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL 541 (1134)
+.+...+++.|.+.||.+|+++|.++|+.++.++++|+.++||+|||++|+++++..+.. ....+.++|||+||++|
T Consensus 34 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~---~~~~~~~~lil~Pt~~L 110 (245)
T 3dkp_A 34 YKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ---PANKGFRALIISPTREL 110 (245)
T ss_dssp HCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS---CCSSSCCEEEECSSHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh---cccCCceEEEEeCCHHH
Confidence 457788899999999999999999999999999999999999999999999998877642 22356789999999999
Q ss_pred HHHHHHHHHHhccCCCCceEEecCCCCCchhH-HhhcCCCcEEEeChHHHHHHHHhc--ccCCCCeEEEEEcchhhhhc-
Q 047890 542 ATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL-RELDQGADIVVATPGRLNDILEMK--KIDFGQVSLLVLDEADRMLD- 617 (1134)
Q Consensus 542 a~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l-~~l~~~~dIIVaTPerL~~lL~~~--~l~l~~l~lVVIDEAHrll~- 617 (1134)
+.|+++++++++...++.+.+++++....... .....+++|+|+||++|.+++... .+.+.++++|||||||++++
T Consensus 111 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~ 190 (245)
T 3dkp_A 111 ASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFED 190 (245)
T ss_dssp HHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccc
Confidence 99999999999888788877776553222111 223456899999999999998766 46788999999999999998
Q ss_pred --cCchHHHHHHHHhC-CCCceEEEEeccCchhHHHHHHhhccCCeeeeecc
Q 047890 618 --MGFEPQIRKIVNEM-PPHRQTLMYTATWPKDVRKIASDLLVNPVQVNIGN 666 (1134)
Q Consensus 618 --~gf~~~i~~IL~~l-~~~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~ 666 (1134)
.+|...+..++..+ ....++++||||++.+++++++.++.+++.+.+..
T Consensus 191 ~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 191 GKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp C--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 46888888888765 45789999999999999999999999998887754
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.95 E-value=1.2e-26 Score=280.46 Aligned_cols=314 Identities=19% Similarity=0.163 Sum_probs=230.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.|+++|.-+.-.+..|+ |+...||+|||+++.+|++.... .+..|.||+||..||.+-.+++..+...+++
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL-------~G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL-------IGKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT-------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh-------cCCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 48999999988888777 99999999999999999875432 4668999999999999999999999888899
Q ss_pred ceEEecCC--------------------------------------------------CCCchhHHhhcCCCcEEEeChH
Q 047890 559 SCTCLYGG--------------------------------------------------APKGPQLRELDQGADIVVATPG 588 (1134)
Q Consensus 559 ~v~~l~GG--------------------------------------------------~~~~~~l~~l~~~~dIIVaTPe 588 (1134)
.+.+++.. ......... -.|+|+++|..
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~~DItYgTn~ 223 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YLCDVTYGTNN 223 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HHSSEEEEEHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hcCCCEEccCc
Confidence 99988872 111111111 23899999998
Q ss_pred HH-HHHHHhc------ccCCCCeEEEEEcchhhhhcc---------------------------------Cc--------
Q 047890 589 RL-NDILEMK------KIDFGQVSLLVLDEADRMLDM---------------------------------GF-------- 620 (1134)
Q Consensus 589 rL-~~lL~~~------~l~l~~l~lVVIDEAHrll~~---------------------------------gf-------- 620 (1134)
.| +++|..+ ......+.+.||||+|.++=. .|
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 76 5666543 223466899999999974310 00
Q ss_pred -------------------------hHHHHHH---HHh---CCC------------------------------------
Q 047890 621 -------------------------EPQIRKI---VNE---MPP------------------------------------ 633 (1134)
Q Consensus 621 -------------------------~~~i~~I---L~~---l~~------------------------------------ 633 (1134)
...+..+ |.. +..
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence 0000001 000 000
Q ss_pred -------------------------CceEEEEeccCchhHHHHHHhhccCCeeeeeccchhhhccccee-eEEEecchhH
Q 047890 634 -------------------------HRQTLMYTATWPKDVRKIASDLLVNPVQVNIGNVDELAANKAIT-QHVEVVPQME 687 (1134)
Q Consensus 634 -------------------------~~qiLllSATl~~~v~~l~~~~l~~~~~i~i~~~d~l~~~~~i~-~~~~~v~~~e 687 (1134)
-.++.+||+|+..+..++.+.+-.+ .+.+.... ....+. ..+......+
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnk---p~~R~d~~d~vy~t~~e 458 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHK---PMIRKDHDDLVFRTQKE 458 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSS---CCCCEECCCEEESSHHH
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCC---CcceeecCcEEEecHHH
Confidence 1258999999988777776666443 22222111 111111 1234456667
Q ss_pred HHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceecc
Q 047890 688 KERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGL 765 (1134)
Q Consensus 688 k~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GL 765 (1134)
|...|...+... ..+.++||||+|++.++.|++.|.+ ++.+.+||++....++..+...|+.| .|+|||++++||+
T Consensus 459 K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 459 KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 777777766654 4678999999999999999999965 78999999996666666566666655 6999999999999
Q ss_pred ccC--------cceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccch
Q 047890 766 DIK--------DIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDS 810 (1134)
Q Consensus 766 DIp--------~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~ 810 (1134)
||+ +..+||++++|.+.+.|+||+||+||.|.+|.+++|++.+|.
T Consensus 537 DI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 537 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 997 667999999999999999999999999999999999998873
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.92 E-value=6.3e-24 Score=263.13 Aligned_cols=126 Identities=20% Similarity=0.321 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccC
Q 047890 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK 768 (1134)
Q Consensus 690 ~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp 768 (1134)
..+..+.+....+.++||||+|+..++.|++.|.+ ++.+..+|++++..+|.++++.|++|+++|||||+++++|||++
T Consensus 427 ~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip 506 (664)
T 1c4o_A 427 DLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIP 506 (664)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCT
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCC
Confidence 33444444555778999999999999999999954 67899999999999999999999999999999999999999999
Q ss_pred cceEEEeecC-----CCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHH
Q 047890 769 DIRVVINYDF-----PNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADL 816 (1134)
Q Consensus 769 ~v~~VI~~d~-----P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l 816 (1134)
++++||++|. |++..+|+||+||+||.+ +|.|++|++..+......+
T Consensus 507 ~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 507 EVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp TEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred CCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 9999999997 899999999999999995 8999999988765544333
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=2.7e-23 Score=255.34 Aligned_cols=130 Identities=23% Similarity=0.219 Sum_probs=112.6
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.|| +|+++|..+++.++.|+ |+.+.||+|||++|++|++..+. .+..|+||+||++||.|.++++..++.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-------~G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-------TGKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-------TCSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-------hCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 588 89999999999999998 99999999999999999864332 345799999999999999999999999
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHH-HHHHHhcc------cCCC---CeEEEEEcchhhhh
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRL-NDILEMKK------IDFG---QVSLLVLDEADRML 616 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL-~~lL~~~~------l~l~---~l~lVVIDEAHrll 616 (1134)
..++.+.+++|+.... .+.....++|+|+||++| +++|..+. +.+. .+.++||||+|+|+
T Consensus 146 ~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 146 GLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred hcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999997643 334445699999999999 89887653 5577 89999999999986
No 76
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=220.53 Aligned_cols=166 Identities=45% Similarity=0.723 Sum_probs=140.9
Q ss_pred cccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcC
Q 047890 672 ANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSG 750 (1134)
Q Consensus 672 ~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsG 750 (1134)
....+.+.+..+...+|...|.++++......++||||+++..++.|++.|.. ++.+..+||+++..+|.++++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 45568888888999999999999998876678999999999999999999954 68899999999999999999999999
Q ss_pred CCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCHH
Q 047890 751 KSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPPE 830 (1134)
Q Consensus 751 e~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~~ 830 (1134)
+++|||||+++++|||++++++||+||+|++...|+||+||++|.|++|.|++|+...+...+.++.+.+....+.++.+
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 175 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSW 175 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 047890 831 VRDMALR 837 (1134)
Q Consensus 831 l~dla~r 837 (1134)
+.+++.+
T Consensus 176 l~~~a~~ 182 (185)
T 2jgn_A 176 LENMAYE 182 (185)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9998864
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.91 E-value=2.9e-23 Score=257.09 Aligned_cols=124 Identities=23% Similarity=0.344 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccC
Q 047890 690 RRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIK 768 (1134)
Q Consensus 690 ~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp 768 (1134)
..+..+.+....+.++||||+|+..++.|++.|.+ ++.+..+|++++..+|.++++.|++|+++|||||+++++|||++
T Consensus 433 ~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip 512 (661)
T 2d7d_A 433 DLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIP 512 (661)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCT
T ss_pred HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccC
Confidence 34445555555678999999999999999999964 68899999999999999999999999999999999999999999
Q ss_pred cceEEEeecC-----CCChhhHHHhhhccCcCCCcceeEEEecccchHHHH
Q 047890 769 DIRVVINYDF-----PNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAA 814 (1134)
Q Consensus 769 ~v~~VI~~d~-----P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~ 814 (1134)
++++||++|. |.+.+.|+||+||+||. ..|.|++|++..+.....
T Consensus 513 ~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 513 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp TEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHH
T ss_pred CCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHH
Confidence 9999999997 89999999999999998 789999999887655443
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=220.51 Aligned_cols=178 Identities=39% Similarity=0.571 Sum_probs=143.9
Q ss_pred hhccCCeeeeeccchhhhcccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEec
Q 047890 654 DLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIH 732 (1134)
Q Consensus 654 ~~l~~~~~i~i~~~d~l~~~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~Lh 732 (1134)
.++.++..+.+.... .....+.+.+..+....|...|..++.. ...++||||+++..++.|++.|.. ++.+..+|
T Consensus 10 ~~~~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~K~~~L~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 10 GVDLGTENLYFQSMG--AASLDVIQEVEYVKEEAKMVYLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTT--SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cccCCCEEEEECCCC--CCCcCceEEEEEcChHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 355666666664433 3445678888888888888888888765 356899999999999999999954 78899999
Q ss_pred CCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEeccc-chH
Q 047890 733 GDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQ-DSK 811 (1134)
Q Consensus 733 G~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~-d~~ 811 (1134)
|+++.++|.++++.|++|+++|||||+++++|||++++++||+||+|++.+.|+||+||++|.|++|.|++|+... +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876 778
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHH
Q 047890 812 YAADLVKVLEGANQHVPPEVRDMA 835 (1134)
Q Consensus 812 ~~~~l~k~L~~~~~~lp~~l~dla 835 (1134)
.+..+.+.++...+.++.++.+++
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHccCcCCHHHHhhc
Confidence 888999999999999999987765
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.88 E-value=4.4e-22 Score=203.79 Aligned_cols=150 Identities=39% Similarity=0.605 Sum_probs=137.1
Q ss_pred ccceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCC
Q 047890 673 NKAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGK 751 (1134)
Q Consensus 673 ~~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe 751 (1134)
...+.+.+..+...+|...|..+++.. ...++||||++++.++.|++.|.. ++.+..+||+|+..+|..+++.|++|+
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 345788888888899999999998865 457999999999999999999954 688999999999999999999999999
Q ss_pred CCeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhh
Q 047890 752 SPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGA 823 (1134)
Q Consensus 752 ~~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~ 823 (1134)
++|||||+++++|||++++++||+||+|++..+|+||+||++|.|++|.|++|+...+...+.++.+.+...
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999988888887776543
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=4.4e-22 Score=205.93 Aligned_cols=157 Identities=35% Similarity=0.551 Sum_probs=137.1
Q ss_pred cceeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCC
Q 047890 674 KAITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752 (1134)
Q Consensus 674 ~~i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~ 752 (1134)
..+.+++..+...+|...|..+++.. ...++||||+++..++.|++.|.. ++.+..+|++|+..+|..+++.|++|++
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 35777888888889999999998865 457999999999999999999954 7889999999999999999999999999
Q ss_pred CeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEeccc-chHHHHHHHHHHHhhcCCCCHHH
Q 047890 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQ-DSKYAADLVKVLEGANQHVPPEV 831 (1134)
Q Consensus 753 ~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~-d~~~~~~l~k~L~~~~~~lp~~l 831 (1134)
+|||||+++++|||++++++||+||+|++...|+||+||++|.|+.|.|++|+... +...+..+.+.+.....+++..+
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999875 45666677777766666666554
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.87 E-value=3.2e-22 Score=205.09 Aligned_cols=154 Identities=37% Similarity=0.627 Sum_probs=131.8
Q ss_pred ceeeEEEecchhH-HHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCC
Q 047890 675 AITQHVEVVPQME-KERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKS 752 (1134)
Q Consensus 675 ~i~~~~~~v~~~e-k~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~ 752 (1134)
.+.+++..+...+ |...|..+++.. ...++||||++++.++.|++.|.. ++.+..+|++++..+|.++++.|++|++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 3566666777666 889999988875 457999999999999999999954 6889999999999999999999999999
Q ss_pred CeeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhcCCCCH
Q 047890 753 PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHVPP 829 (1134)
Q Consensus 753 ~VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~~~lp~ 829 (1134)
+|||||+++++|||++++++||++|+|++..+|+||+||++|.|+.|.|++|+...+...+.++.+.+......++.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999988888887777655555443
No 82
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=5.1e-22 Score=209.74 Aligned_cols=167 Identities=23% Similarity=0.228 Sum_probs=122.9
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHH-HHHHHHHhc
Q 047890 475 AGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQ-IQDEANKFG 553 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q-~~~el~kl~ 553 (1134)
.....|+++|.++++.++.++++|+.++||+|||++++++++..+...... ....++|||||+++|+.| |.++++++.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-SEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-cCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 345579999999999999999999999999999999999988776543211 235689999999999999 888899887
Q ss_pred cCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcc------cCCCCeEEEEEcchhhhhccCchHHHH-H
Q 047890 554 RSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKK------IDFGQVSLLVLDEADRMLDMGFEPQIR-K 626 (1134)
Q Consensus 554 ~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~------l~l~~l~lVVIDEAHrll~~gf~~~i~-~ 626 (1134)
.. .+.+..++++.........+...++|+|+||+.|.+++.... +.+.++++|||||||++.+.++...+. .
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 678888888776655555555568999999999999887543 567889999999999998765544443 3
Q ss_pred HHHhC-------------CCCceEEEEecc
Q 047890 627 IVNEM-------------PPHRQTLMYTAT 643 (1134)
Q Consensus 627 IL~~l-------------~~~~qiLllSAT 643 (1134)
++... ....++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 156789999998
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=201.80 Aligned_cols=150 Identities=29% Similarity=0.509 Sum_probs=129.4
Q ss_pred cceeeEEEecchhH-HHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCC
Q 047890 674 KAITQHVEVVPQME-KERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGK 751 (1134)
Q Consensus 674 ~~i~~~~~~v~~~e-k~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe 751 (1134)
..+.+++..+...+ |...|..+++.. ...++||||+++..++.|+..|.. ++.+..+||+++..+|..+++.|++|+
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 45777777777655 888888887754 457999999999999999999964 688999999999999999999999999
Q ss_pred CCeeeecccceeccccCcceEEEeecCC------CChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhhc
Q 047890 752 SPILVATDVAARGLDIKDIRVVINYDFP------NGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGAN 824 (1134)
Q Consensus 752 ~~VLVATdvl~~GLDIp~v~~VI~~d~P------~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~~ 824 (1134)
++|||||+++++|||++++++||+||+| ++..+|+||+||++|.|+.|.|++|+...+...+..+.+.+....
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999 889999999999999999999999999998887777777765443
No 84
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.85 E-value=1.4e-20 Score=228.13 Aligned_cols=127 Identities=23% Similarity=0.194 Sum_probs=88.0
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 047890 475 AGFSSPTPIQAQTWPI----ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN 550 (1134)
Q Consensus 475 ~Gf~~prpiQ~eaI~~----il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~ 550 (1134)
.|| +|+++|.+++.. +..++++|+.|+||+|||++|++|++.. ..++||++||++|+.|+.+++.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----------~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----------KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----------TCEEEEEESCHHHHHHHHHHHG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 466 799999998654 4578999999999999999999998642 4599999999999999999998
Q ss_pred HhccCCCCceEEecCCCCC--------c---------------------------------------hhHHhhcCCCcEE
Q 047890 551 KFGRSSRLSCTCLYGGAPK--------G---------------------------------------PQLRELDQGADIV 583 (1134)
Q Consensus 551 kl~~~~~i~v~~l~GG~~~--------~---------------------------------------~~l~~l~~~~dII 583 (1134)
++ ++++.++.|.... . ...+.....++||
T Consensus 73 ~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 73 LL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp GG----TCCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred hc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 85 2344443332100 0 0001123457999
Q ss_pred EeChHHHHHHHHhccc-------CCCCeEEEEEcchhhhh
Q 047890 584 VATPGRLNDILEMKKI-------DFGQVSLLVLDEADRML 616 (1134)
Q Consensus 584 VaTPerL~~lL~~~~l-------~l~~l~lVVIDEAHrll 616 (1134)
|+|+..|++.+....+ .+.+..+|||||||+|.
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999999886543332 24578899999999874
No 85
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.85 E-value=7.4e-21 Score=203.37 Aligned_cols=146 Identities=36% Similarity=0.592 Sum_probs=130.0
Q ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCee
Q 047890 677 TQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPIL 755 (1134)
Q Consensus 677 ~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VL 755 (1134)
......+....|...|..+++... ..++||||++++.++.|++.|.. ++.+..+||+++..+|..+++.|++|+++||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHC-CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 345556677788899999887544 67999999999999999999954 7889999999999999999999999999999
Q ss_pred eecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhh
Q 047890 756 VATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGA 823 (1134)
Q Consensus 756 VATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~ 823 (1134)
|||+++++|||++++++||++|+|++...|+||+||+||.|+.|.|++|+...+...+..+.+.+...
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999888887777776543
No 86
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.83 E-value=3.2e-20 Score=208.81 Aligned_cols=146 Identities=35% Similarity=0.574 Sum_probs=127.2
Q ss_pred eeeEEEecchhHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCe
Q 047890 676 ITQHVEVVPQMEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPI 754 (1134)
Q Consensus 676 i~~~~~~v~~~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~V 754 (1134)
+.+.+..+...+|...|..+++... ..++||||++++.++.|++.|. .++.+..+||+|+..+|..+++.|++|+++|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4556667777889999999988765 7899999999999999999994 4788999999999999999999999999999
Q ss_pred eeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHh
Q 047890 755 LVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEG 822 (1134)
Q Consensus 755 LVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~ 822 (1134)
||||+++++||||+++++||+||+|++.+.|+||+||+||.|+.|.|++|+...+...+..+.+.+..
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999887776666665543
No 87
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=2.8e-20 Score=206.70 Aligned_cols=255 Identities=15% Similarity=0.070 Sum_probs=167.6
Q ss_pred CcccccCCceeeccCCCCCCCCCCCCcccccCCCC--CCccccCCCCCCCCCCCccccccccccCCCCCCCC--CCCCCC
Q 047890 361 NVHCRTGNDYYFNGNKDGPVMGPQQPKLAALPMGR--NPQETRMGGAAPGQATGLNAVAGHAMHGMYSHAGS--FPNNAM 436 (1134)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h~~~--~~~~a~ 436 (1134)
+++++..|.+|+.. ..-+.+.++..+++++++|. |-+.+|.|.... .-.+... .+..++-.++.-. +.++.+
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~-~~~lp~g~l~~~~~~~~~~~~ 77 (282)
T 1rif_A 2 DIKVHFHDFSHVRI-DCEESTFHELRDFFSFEADGYRFNPRFRYGNWDG--RIRLLDY-NRLLPFGLVGQIKKFCDNFGY 77 (282)
T ss_dssp CEEEEEETTTEEEE-ECCHHHHHHHHHHTEEECTTTTSCHHHHTSSCCS--EEESSCT-TCEEEGGGGGGHHHHHHHTTC
T ss_pred ceeEEEeeeEEEEE-ecChhHHHHHHhheeEECCccccCccccCCCCCc--eEEEecC-CCccccchHHHHHHHHHhcCC
Confidence 57788899999943 56666889999999999999 766777765331 0000000 0000000000000 000000
Q ss_pred CCCCCCCCCCCcCCChhHhhhhccccccchhHHHHH-HHcCC------CCCCHHHHHHHHHHHcCCCEEEEccCCCchhH
Q 047890 437 MRPTFMGSPGVTDLSPAEVYRQRHEVSATLPRVASM-HSAGF------SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTL 509 (1134)
Q Consensus 437 ~~P~~~~~p~i~~~~p~e~~~~~~ev~v~~~~l~~l-~~~Gf------~~prpiQ~eaI~~il~grdvLl~ApTGSGKTl 509 (1134)
. . .+... .. ....+....+..+ ....+ .+|+++|.++++.++.+++.|++++||+|||+
T Consensus 78 ~-~---------~~~~~--~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~ 143 (282)
T 1rif_A 78 K-A---------WIDPQ--IN--EKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSL 143 (282)
T ss_dssp C-E---------EECGG--GG--CCCCCCHHHHHHHHHTCCCEETTEECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHH
T ss_pred e-e---------EecCc--cC--CCCCCCHHHHHhHHhHHHHhcCCCccCccHHHHHHHHHHHhcCCeEEEcCCCCCcHH
Confidence 0 0 00000 00 0000111111111 11111 37999999999999998899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHH
Q 047890 510 GYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGR 589 (1134)
Q Consensus 510 a~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPer 589 (1134)
++++++...+.. ...++||||||++|+.||++++++++....+.+..++++..... ......+|+|+|++.
T Consensus 144 ~~~~~~~~~~~~------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~ 214 (282)
T 1rif_A 144 IQALLARYYLEN------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQT 214 (282)
T ss_dssp HHHHHHHHHHHH------CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHH
T ss_pred HHHHHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHH
Confidence 998887776652 23489999999999999999999998766677888888765433 233568999999988
Q ss_pred HHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchhHH
Q 047890 590 LNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649 (1134)
Q Consensus 590 L~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~ 649 (1134)
|... ....+.++++|||||||++.+ ..+..++..+....++|+||||++....
T Consensus 215 l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 215 VVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGKA 267 (282)
T ss_dssp HTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTTST
T ss_pred HHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCCcch
Confidence 7543 223467899999999999874 4777888888778999999999876543
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.81 E-value=5.3e-18 Score=206.11 Aligned_cols=129 Identities=21% Similarity=0.111 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHH----HHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWPI----ALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~----il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+++++|.+++.. +..++++|+.|+||+|||++|++|++. .+.++||++||++|+.|+.+++.++..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 589999997764 457899999999999999999999886 246999999999999999999999877
Q ss_pred CCCCceEEecCCCCC---------------------------------chhH------------------HhhcCCCcEE
Q 047890 555 SSRLSCTCLYGGAPK---------------------------------GPQL------------------RELDQGADIV 583 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~---------------------------------~~~l------------------~~l~~~~dII 583 (1134)
..++++.++.|.... .... +.....++||
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEE
Confidence 667777777663210 0001 1223468999
Q ss_pred EeChHHHHHHHHhcccCC-CCeEEEEEcchhhhhc
Q 047890 584 VATPGRLNDILEMKKIDF-GQVSLLVLDEADRMLD 617 (1134)
Q Consensus 584 VaTPerL~~lL~~~~l~l-~~l~lVVIDEAHrll~ 617 (1134)
|+|+..|++......+.+ .+..+|||||||.|.+
T Consensus 153 V~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 153 ALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 999999998764443333 4678999999998765
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.70 E-value=1.4e-21 Score=201.47 Aligned_cols=147 Identities=31% Similarity=0.526 Sum_probs=127.8
Q ss_pred eeeEEEecch-hHHHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCC
Q 047890 676 ITQHVEVVPQ-MEKERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSP 753 (1134)
Q Consensus 676 i~~~~~~v~~-~ek~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~ 753 (1134)
+.+.+..+.. ..|...|..+++.. ...++||||+++..++.|++.|.. ++.+..+||+++..+|..+++.|++|+++
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 4445555555 66777777777653 457999999999999999999965 67889999999999999999999999999
Q ss_pred eeeecccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHHhh
Q 047890 754 ILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGA 823 (1134)
Q Consensus 754 VLVATdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~~~ 823 (1134)
|||||+++++|||++++++||++|+|++...|+||+||++|.|+.|.|++|+...+...+.++.+.+...
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 9999999999999999999999999999999999999999999999999999988877776666655433
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=186.88 Aligned_cols=168 Identities=17% Similarity=0.158 Sum_probs=122.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc-
Q 047890 476 GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR- 554 (1134)
Q Consensus 476 Gf~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~- 554 (1134)
....++++|.++++.+..+++++++++||||||+++.++++..+.... ......+||++|+++|+.|+.+.+.+...
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~--~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND--RAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT--CGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC--CCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 344579999999999999999999999999999988888776554321 12356899999999999999998876543
Q ss_pred CCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhh-hccCch-HHHHHHHHhCC
Q 047890 555 SSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRM-LDMGFE-PQIRKIVNEMP 632 (1134)
Q Consensus 555 ~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrl-l~~gf~-~~i~~IL~~l~ 632 (1134)
..+..+...... ........++|+|+||++|.+++.. .+.++++|||||||++ ++.+|. ..++.++...
T Consensus 136 ~~~~~~g~~~~~-----~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~- 206 (235)
T 3llm_A 136 EPGKSCGYSVRF-----ESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY- 206 (235)
T ss_dssp CTTSSEEEEETT-----EEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-
T ss_pred ccCceEEEeech-----hhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-
Confidence 222222221110 0011124578999999999999865 4789999999999986 676666 4556666554
Q ss_pred CCceEEEEeccCchhHHHHHHhhc
Q 047890 633 PHRQTLMYTATWPKDVRKIASDLL 656 (1134)
Q Consensus 633 ~~~qiLllSATl~~~v~~l~~~~l 656 (1134)
++.++|+||||++.+. +.+.+.
T Consensus 207 ~~~~~il~SAT~~~~~--~~~~~~ 228 (235)
T 3llm_A 207 PEVRIVLMSATIDTSM--FCEYFF 228 (235)
T ss_dssp TTSEEEEEECSSCCHH--HHHHTT
T ss_pred CCCeEEEEecCCCHHH--HHHHcC
Confidence 5788999999998765 444443
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.71 E-value=8.4e-16 Score=189.02 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=65.2
Q ss_pred CCCHHHHHHHH----HHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWP----IALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~----~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
+||+.|.+.+. .+..++++|+.||||+|||++|++|++..+.. .+.++||++||++|+.|+.+++.++..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~------~~~kvli~t~T~~l~~Qi~~el~~l~~ 76 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE------RKLKVLYLVRTNSQEEQVIKELRSLSS 76 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH------HTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh------cCCeEEEECCCHHHHHHHHHHHHHHhh
Confidence 48999999875 44578999999999999999999999988764 346999999999999999999988765
Q ss_pred CCCCceEEecC
Q 047890 555 SSRLSCTCLYG 565 (1134)
Q Consensus 555 ~~~i~v~~l~G 565 (1134)
...++++++.|
T Consensus 77 ~~~~~~~~l~g 87 (620)
T 4a15_A 77 TMKIRAIPMQG 87 (620)
T ss_dssp HSCCCEEECCC
T ss_pred ccCeEEEEEEC
Confidence 44555544443
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.70 E-value=5.5e-17 Score=176.33 Aligned_cols=138 Identities=22% Similarity=0.150 Sum_probs=108.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
.+|+++|.+++..+++++++|++++||+|||+++++++... +.++|||+|+++|+.||++++.+| +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 46999999999999999999999999999999987765432 457999999999999999999985 4
Q ss_pred Cc-eEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCce
Q 047890 558 LS-CTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636 (1134)
Q Consensus 558 i~-v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~q 636 (1134)
+. +..+.++... ..+|+|+|++.|...+.. ....+++|||||||++.+..+ ..++..+. ..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMSI-APF 220 (237)
T ss_dssp GGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSE
T ss_pred CCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhcc-CCE
Confidence 56 6666665432 468999999998765542 124689999999999876544 34555554 567
Q ss_pred EEEEeccCch
Q 047890 637 TLMYTATWPK 646 (1134)
Q Consensus 637 iLllSATl~~ 646 (1134)
+|+||||+..
T Consensus 221 ~l~LSATp~r 230 (237)
T 2fz4_A 221 RLGLTATFER 230 (237)
T ss_dssp EEEEEESCC-
T ss_pred EEEEecCCCC
Confidence 9999999764
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.68 E-value=8.2e-17 Score=178.58 Aligned_cols=139 Identities=18% Similarity=0.223 Sum_probs=104.0
Q ss_pred cchhHHHHHHHHHHHHH-hcCCEEEEEeCcHHHHHHHHHHhcC--CCcEEEecCCCChhHHHHHHHHHhcC-CCC-eeee
Q 047890 683 VPQMEKERRLQQILRAQ-ERGSRVIIFCSTKRLCDQLARSIGR--NFGAIAIHGDKSQGERDWVLNQFRSG-KSP-ILVA 757 (1134)
Q Consensus 683 v~~~ek~~~L~~llk~~-~~~~kvLVF~nT~~~ae~La~~L~~--~~~v~~LhG~ms~~eR~~il~~FrsG-e~~-VLVA 757 (1134)
+....|...|.++++.. ..+.++||||+++..++.|...|.+ ++.+..+||+++.++|.++++.|+++ +++ |||+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34556788888888765 4578999999999999999999965 78899999999999999999999998 777 7899
Q ss_pred cccceeccccCcceEEEeecCCCChhhHHHhhhccCcCCCcceeEEEecccchHHHHHHHHHHH
Q 047890 758 TDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLE 821 (1134)
Q Consensus 758 Tdvl~~GLDIp~v~~VI~~d~P~s~~~yiQRiGRagR~GqkG~~ii~~~~~d~~~~~~l~k~L~ 821 (1134)
|+++++|||++.+++||+||+||++..|+||+||++|.|+++.|++|..-....+.+.+.+.+.
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~ 235 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLA 235 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHH
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887766554433444455555444
No 94
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.63 E-value=1.2e-08 Score=83.56 Aligned_cols=38 Identities=37% Similarity=0.732 Sum_probs=34.4
Q ss_pred CCCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 16 APDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
-++|+.||.+|+++-|. +| .||||..|..||||+|+..
T Consensus 14 ~~~~~~LPpGW~~~~D~-sG-tYY~h~~T~tTQWerP~~~ 51 (55)
T 2e45_A 14 FETDSDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGRA 51 (55)
T ss_dssp TCSCSCCCTTEEEEEET-TE-EEEEETTTCCEESSCCCCC
T ss_pred ccCCCCCCCCCeEeecC-CC-CEEEEcCCCCCccCCCCCC
Confidence 45789999999999999 77 9999999999999999743
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.62 E-value=5.2e-08 Score=119.68 Aligned_cols=146 Identities=24% Similarity=0.315 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHcCCCEEEEccCCCchhHH--HHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 481 TPIQAQTWPIALQGRDIVAIAKTGSGKTLG--YLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 481 rpiQ~eaI~~il~grdvLl~ApTGSGKTla--~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
+++|++|++.++.++.+|+.+++|||||.+ +++.++..+ . ...+.++++++||.+++.++.+.+..+....++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~---~--~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM---A--DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHT---C--SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHh---h--hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC
Confidence 789999999999999999999999999944 444433321 1 124568999999999999998887765443332
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEE
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTL 638 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiL 638 (1134)
...... .... ....+ ..++..+++.. . +.........+++||||||+ |++ ...+..++..++...++|
T Consensus 226 ~~~~~~-~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 226 TDEQKK-RIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp CSCCCC-SCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEE
T ss_pred CHHHHh-ccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEE
Confidence 211110 0000 00000 11222222221 1 11111222378999999999 555 456788888888888888
Q ss_pred EEecc
Q 047890 639 MYTAT 643 (1134)
Q Consensus 639 llSAT 643 (1134)
++--.
T Consensus 294 LvGD~ 298 (608)
T 1w36_D 294 FLGDR 298 (608)
T ss_dssp EEECT
T ss_pred EEcch
Confidence 87655
No 96
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.50 E-value=6.1e-08 Score=80.67 Aligned_cols=36 Identities=36% Similarity=0.696 Sum_probs=33.8
Q ss_pred CCCCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 19 DPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
|..||.+|+...|.++|.+||||.+|++||||+|..
T Consensus 5 ~~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~ 40 (54)
T 2jv4_A 5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPAD 40 (54)
T ss_dssp CCCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTT
T ss_pred CCCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCC
Confidence 567999999999999999999999999999999964
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.46 E-value=8.6e-07 Score=109.63 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 479 SPTPIQAQTWPIALQGRD-IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grd-vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.|.+-|++||..++..++ .||.+|.|||||.+.+..+..+++ .+.+|||++||..-++++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-------~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-------QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 589999999999998765 688899999999986666655554 45689999999999999998887653
No 98
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.44 E-value=1e-07 Score=74.48 Aligned_cols=37 Identities=32% Similarity=0.663 Sum_probs=34.0
Q ss_pred CCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 17 PDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
+.|..||.+|++..|. +|.+||||..|++||||+|..
T Consensus 3 ~~~~~LP~gW~~~~d~-~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 3 SGSSGLPPGWQSYLSP-QGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp CCCSSCCTTCEEEECT-TSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCCCCceEEECC-CCCEEEEECCCCCEeCCCCCC
Confidence 5788999999999995 899999999999999999963
No 99
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.38 E-value=1.3e-07 Score=72.87 Aligned_cols=34 Identities=38% Similarity=0.799 Sum_probs=30.2
Q ss_pred CCCCCCcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 20 PTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
+.||..|+...|. +| +||||.+|++||||+|...
T Consensus 2 ~~LP~GWe~~~d~-~g-~YY~n~~t~~tqWe~P~~~ 35 (38)
T 2ho2_A 2 SDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGRA 35 (38)
T ss_dssp CCSCTTEEEEECS-SC-EEEEETTTTEEESSCCCC-
T ss_pred CcCCCCceEEEeC-CC-CEEEecCCCCEeccCCCCC
Confidence 4699999999997 78 9999999999999999743
No 100
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.31 E-value=8.4e-08 Score=79.23 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=34.5
Q ss_pred CCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
.++.||.+|+...|.++|..||||.+|++||||+|...
T Consensus 7 ~~~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 7 PEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp CHHHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CcCCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 34679999999999999999999999999999999754
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.27 E-value=1.8e-05 Score=93.75 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=50.4
Q ss_pred HHcCCCCCCHHHHHHHHHHHcC----C-CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHH
Q 047890 473 HSAGFSSPTPIQAQTWPIALQG----R-DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQD 547 (1134)
Q Consensus 473 ~~~Gf~~prpiQ~eaI~~il~g----r-dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~ 547 (1134)
.-..|..|++.|++|+..++.. + .+||.++.|||||.+.... +..|... ....+++++||...+..+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~-~~~l~~~-----~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFI-IEALIST-----GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHH-HHHHHHT-----TCCCEEEEESSHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHH-HHHHHhc-----CCceEEEecCcHHHHHHHHh
Confidence 3456788999999999987643 3 7899999999999765433 3333321 12379999999888877665
Q ss_pred HH
Q 047890 548 EA 549 (1134)
Q Consensus 548 el 549 (1134)
.+
T Consensus 93 ~~ 94 (459)
T 3upu_A 93 LS 94 (459)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 102
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=4.9e-07 Score=71.79 Aligned_cols=38 Identities=24% Similarity=0.566 Sum_probs=34.2
Q ss_pred CCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 17 PDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
+.++.||.+|+...|. +|.+||+|.+|.+||||+|...
T Consensus 3 ~~~~~LP~GWe~~~d~-~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 3 SGSSGLPPGWEQRVDQ-HGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp SSCCSCCTTEEEEECT-TSCEEEEETTTCCEESSCSSSC
T ss_pred CCCCCCCCCceEEECC-CCCEEEEECCCCCEecCCcCCC
Confidence 4578899999999996 8999999999999999999743
No 103
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.20 E-value=5.4e-07 Score=69.85 Aligned_cols=33 Identities=33% Similarity=0.875 Sum_probs=30.1
Q ss_pred CCCCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 19 DPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
+..||..|+...|.+ | .||||.+|++||||+|.
T Consensus 6 ~~~LP~GWe~~~~~~-G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 6 SGGLPPGWRKIHDAA-G-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCCTTEEEEEETT-E-EEEEESSSCCEESSCCC
T ss_pred CCCCCCCcEEEEcCC-C-CEEEEcCCCCEeccCCC
Confidence 567999999999988 7 59999999999999995
No 104
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.13 E-value=1.6e-05 Score=93.87 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=8.5
Q ss_pred cceeEEEecccchHHHHHHHHHH
Q 047890 798 TGVAHTFFSEQDSKYAADLVKVL 820 (1134)
Q Consensus 798 kG~~ii~~~~~d~~~~~~l~k~L 820 (1134)
+|.|+|.|. +...+...++.|
T Consensus 144 kG~aFV~F~--~~e~A~~Ai~~l 164 (437)
T 3pgw_S 144 RGYAFIEYE--HERDMHSAYKHA 164 (437)
T ss_pred cceEEEeec--cHHHHHHHHHHc
Confidence 344444443 333334444333
No 105
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.08 E-value=1.5e-06 Score=66.33 Aligned_cols=33 Identities=36% Similarity=0.784 Sum_probs=30.9
Q ss_pred CCCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 20 PTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
+.||.+|+...| .+|.+||+|.+|.+||||+|.
T Consensus 3 ~~LP~GWe~~~d-~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 3 PPLPPGWEEKVD-NLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp SCSCTTEEEEEC-SSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCCEEEEC-CCCCEEEEECCCCCEeeeCcC
Confidence 579999999999 699999999999999999995
No 106
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.06 E-value=1.7e-06 Score=68.67 Aligned_cols=35 Identities=34% Similarity=0.672 Sum_probs=31.8
Q ss_pred CCCCCCcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 20 PTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
..||.+|+...|. +|.+||||..|++||||+|..+
T Consensus 7 ~~LP~gW~~~~~~-~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 7 MPLPPGWERRTDV-EGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp CCCCSSEEEEECT-TSCEEEEETTTTEEESSCCCSC
T ss_pred CCCCCCCEEEECC-CCCEEEEECCCCCCcccCCccc
Confidence 5799999999995 8999999999999999999743
No 107
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.05 E-value=1.8e-06 Score=67.88 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=33.1
Q ss_pred CCCCCCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 17 PDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
+.+..||.+|+...| .+|.+||+|..|..|+||+|.
T Consensus 4 ~~~~~LP~gWe~~~~-~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 4 GIQSFLPPGWEMRIA-PNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CCCCSSCTTEEEEEC-TTSCEEEEETTTTEEESSCGG
T ss_pred CccCCCCCCcEEEEc-CCCCEEEEECCCCCeecCCCC
Confidence 467889999999999 589999999999999999995
No 108
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.02 E-value=2.2e-06 Score=65.29 Aligned_cols=34 Identities=32% Similarity=0.679 Sum_probs=31.5
Q ss_pred CCCCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 19 DPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
+..||.+|+...|. +|.+||+|..|..|+||+|.
T Consensus 2 ~~~LP~gWe~~~d~-~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 2 SPGLPSGWEERKDA-KGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp CTTCCTTEEEEECS-SSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCCCEEEECC-CCCEEEEECCCCCEeCcCCC
Confidence 46799999999995 89999999999999999995
No 109
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.00 E-value=2.4e-06 Score=65.55 Aligned_cols=34 Identities=26% Similarity=0.590 Sum_probs=30.9
Q ss_pred CCCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 20 PTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
..||.+|+...| .+|.+||||.+|++|+||+|..
T Consensus 2 ~~LP~gW~~~~~-~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 2 MGLPPGWDEYKT-HNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CCSCTTEEEEEC-SSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEEC-CCCCEEEEECCCCCeeeeCcCC
Confidence 369999999988 5899999999999999999963
No 110
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=97.99 E-value=3.4e-06 Score=65.50 Aligned_cols=35 Identities=29% Similarity=0.604 Sum_probs=31.6
Q ss_pred CCCCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 19 DPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
.+.||.+|+...| .+|.+||+|..|..|+||+|..
T Consensus 4 ~~~LP~gWe~~~d-~~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 4 MGPLPPGWERRVD-NMGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp SCCCCSSCEEEEC-TTSCEEEECSSSCCEECCCCCC
T ss_pred cCCCCCCcEEEEc-CCCCEEEEECCCCCEeccCCCC
Confidence 3569999999999 5999999999999999999963
No 111
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.97 E-value=3.9e-05 Score=94.46 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 477 f~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
+..+++.|.+|+..++...-+||.++.|+|||.+....+..+++ ..+.++||++||...++++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHT------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHH------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45689999999999998888899999999999875544433332 13568999999999999999988765
No 112
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.96 E-value=1.8e-05 Score=96.37 Aligned_cols=127 Identities=19% Similarity=0.189 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
.+++.|++|+..++....+||.++.|+|||.+... ++..+.. .+.++++++||...+..+.+.+. .
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~-l~~~l~~------~g~~Vl~~ApT~~Aa~~L~e~~~-------~ 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKA-VADLAES------LGLEVGLCAPTGKAARRLGEVTG-------R 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHH-HHHHHHH------TTCCEEEEESSHHHHHHHHHHHT-------S
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHH-HHHHHHh------cCCeEEEecCcHHHHHHhHhhhc-------c
Confidence 48999999999999999999999999999977443 3333332 45689999999988887765432 1
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEE
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTL 638 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiL 638 (1134)
....++ .+. .+.. + .+.........+++|||||++.+. ...+..++..++...++|
T Consensus 255 ~a~Tih----------~ll---~~~~-~------~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 255 TASTVH----------RLL---GYGP-Q------GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVL 310 (574)
T ss_dssp CEEEHH----------HHT---TEET-T------EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEE
T ss_pred cHHHHH----------HHH---cCCc-c------hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEE
Confidence 111111 000 0000 0 000111223367899999999653 346667777777666666
Q ss_pred EEecc
Q 047890 639 MYTAT 643 (1134)
Q Consensus 639 llSAT 643 (1134)
++--.
T Consensus 311 lvGD~ 315 (574)
T 3e1s_A 311 LVGDT 315 (574)
T ss_dssp EEECT
T ss_pred EEecc
Confidence 65433
No 113
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=97.95 E-value=2.2e-06 Score=61.03 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=25.2
Q ss_pred CCcccccCCCCcceEeecCCcCceeeccC
Q 047890 24 KPWKGLIDGSTGLLYYWNPETNVTQYEKP 52 (1134)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (1134)
.+|+ +|.++|..||+|.+|++||||+|
T Consensus 1 ~gWe--~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE--IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE--EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe--EECCCCCeEEEECCCCCEeccCC
Confidence 3699 79999999999999999999998
No 114
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.95 E-value=2.3e-05 Score=92.43 Aligned_cols=7 Identities=0% Similarity=-0.012 Sum_probs=2.6
Q ss_pred hHHHhhh
Q 047890 784 DYVHRIG 790 (1134)
Q Consensus 784 ~yiQRiG 790 (1134)
.+...+.
T Consensus 118 ~L~~~F~ 124 (437)
T 3pgw_S 118 KLRREFE 124 (437)
T ss_pred HHHHHHH
Confidence 3333333
No 115
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=97.94 E-value=6.1e-06 Score=66.43 Aligned_cols=44 Identities=18% Similarity=0.408 Sum_probs=38.2
Q ss_pred CCCcCCCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCC
Q 047890 12 GPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALP 56 (1134)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (1134)
||-=.+.+..||.+|+..+| .+|.+||.|.+|..|+||.|....
T Consensus 1 ~p~~~~~~~~LP~gWe~~~~-~~Gr~Yyinh~t~~TtW~~Pr~~~ 44 (46)
T 2ez5_W 1 GPLGSGEEEPLPPRWSMQVA-PNGRTFFIDHASRRTTWIDPRNGR 44 (46)
T ss_dssp CCSSSCCSCCCCTTEEEEEC-TTSSEEEEETTTTEEESBCTTTCC
T ss_pred CCCCCCCCCCCCcCcEEEEc-CCCCEEEEECCCCCEeccCCCCCC
Confidence 45556778889999999999 589999999999999999997543
No 116
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=97.89 E-value=7.4e-06 Score=66.75 Aligned_cols=38 Identities=29% Similarity=0.523 Sum_probs=33.8
Q ss_pred CCCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 16 APDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
.-++..||..|+...| .+|.+||.|..|..||||+|..
T Consensus 8 ~~~~~~LP~GWe~~~d-~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 8 LDSELELPAGWEKIED-PVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp CCCSSCCCTTEEEEEE-TTTEEEEEETTTTEEESSCCCS
T ss_pred cCCCCCCCcCceEEEc-CCCCEEEEeCCCCCEecCCCCC
Confidence 3456789999999999 6899999999999999999974
No 117
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=6.1e-05 Score=95.17 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 477 f~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
+..|++.|.+||..++...-+||.++.|||||.+....+..++.. .+.++||++||...++++.+.+.+++
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 456899999999999987778999999999998865544444332 24589999999999999999988753
No 118
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.84 E-value=8.4e-05 Score=83.66 Aligned_cols=119 Identities=10% Similarity=0.061 Sum_probs=83.4
Q ss_pred chhHHHHHHHHHHHHHh-cCCEEEEEeCcHHHHHHHHHHhc-CCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccc
Q 047890 684 PQMEKERRLQQILRAQE-RGSRVIIFCSTKRLCDQLARSIG-RNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVA 761 (1134)
Q Consensus 684 ~~~ek~~~L~~llk~~~-~~~kvLVF~nT~~~ae~La~~L~-~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl 761 (1134)
....|...|..++..+. .+.+||||++..+..+.|..+|. +++.+..+.|.... .+.+. .+..+.|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~----~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA----NDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc----ccCCceEEEEECCC
Confidence 34567778888887664 56799999999999999999985 57889999998443 22221 24455565557666
Q ss_pred eeccc-----cCcceEEEeecCCCChhhH-HHhhhccCcC--CCcc--eeEEEecc
Q 047890 762 ARGLD-----IKDIRVVINYDFPNGVEDY-VHRIGRTGRA--GATG--VAHTFFSE 807 (1134)
Q Consensus 762 ~~GLD-----Ip~v~~VI~~d~P~s~~~y-iQRiGRagR~--GqkG--~~ii~~~~ 807 (1134)
+-|+| +..++.||.||..|++..- +|++-|+.|. |++. .++-++..
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~ 236 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAI 236 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEET
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCC
Confidence 76775 6889999999999999986 9999999998 4444 44445543
No 119
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=97.84 E-value=6.4e-06 Score=63.59 Aligned_cols=36 Identities=25% Similarity=0.575 Sum_probs=31.0
Q ss_pred CCCCCCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 17 PDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
|.+..||.+|+...| .+|.+||.|..|..|+||.|.
T Consensus 2 ~~~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 2 AMEGPLPDGWEQAMT-QDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp ---CCCSSSCCEEEE-TTTEEEEEETTTTEEESSCTT
T ss_pred CccCCCCCCcEEEEC-CCCCEEEEECCCCCEeCCCCC
Confidence 456679999999999 789999999999999999984
No 120
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.83 E-value=0.00045 Score=84.85 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
..|++.|++||. .....++|.|+.|||||.+.+.-+..++.... ....++|+|++|+..+.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~---~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN---CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC---CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC---CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 458999999997 33577999999999999986665555554211 123489999999999999999998864
No 121
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.83 E-value=9.4e-06 Score=63.38 Aligned_cols=37 Identities=22% Similarity=0.513 Sum_probs=33.8
Q ss_pred CCCCCCCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 16 APDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
.|.+..||.+|+...| .+|.+||.|..|..|+||.|.
T Consensus 2 ~~~~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Pr 38 (40)
T 2ysf_A 2 SSGSSGLPEGWEMRFT-VDGIPYFVDHNRRTTTYIDPR 38 (40)
T ss_dssp CCCCCCCCSSEEEEEC-TTCCEEEEETTTCCEESSCTT
T ss_pred CCCcCCCCcCcEEEEc-CCCCEEEEECCCCcEecCCCC
Confidence 3567889999999999 799999999999999999996
No 122
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.82 E-value=1e-05 Score=63.12 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=33.1
Q ss_pred CCCCCCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 17 PDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
+.+..||.+|+...| .+|.+||.|..|..|+||.|.
T Consensus 3 ~~~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 3 SGSSGLPYGWEEAYT-ADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp CSSSCCCTTEEEEEC-SSSCEEEEESSSCCEECCCCC
T ss_pred CCcCCCCCCcEEEEc-CCCCEEEEECCCCcCcCCCCC
Confidence 466789999999999 799999999999999999996
No 123
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=97.81 E-value=1e-05 Score=66.30 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=34.1
Q ss_pred CCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
+...||.+|+...| .+|.+||+|..|..|+||+|....+
T Consensus 8 ~~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~T~We~Pr~~~~ 46 (50)
T 1i5h_W 8 DLGPLPPGWEERTH-TDGRVFFINHNIKKTQWEDPRMQNV 46 (50)
T ss_dssp CCSSCSTTEEEEEC-TTSCEEEEETTTTEEESSCTTTSCC
T ss_pred cCCCCCcCcEEEEc-CCCCEEEEECCCCCEEeeCCCCCcc
Confidence 34569999999999 8899999999999999999975543
No 124
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=97.80 E-value=8.5e-06 Score=66.50 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=31.9
Q ss_pred CCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 17 PDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
..+..||.+|+...| .+|.+||.|..|..|+||.|....|
T Consensus 8 ~~~~~LP~gWe~~~~-~~G~~Yy~nh~T~~ttWe~Pr~~~p 47 (49)
T 2kpz_A 8 IEQGFLPKGWEVRHA-PNGRPFFIDHNTKTTTWEDPRLKIP 47 (49)
T ss_dssp ----CCCTTEEEEEC-TTSCEEEEETTTTEEESSCTTCC--
T ss_pred ccCCCCCCCcEEEEC-CCCCEEEEECCCCCEecCCCCCCCC
Confidence 456789999999999 6899999999999999999976543
No 125
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=97.80 E-value=5.8e-06 Score=64.89 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=26.8
Q ss_pred CCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 21 TLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
.+|..|+.+++. +|..||||.+|++++||+|.
T Consensus 9 ~~~~~W~e~~~~-~G~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 9 SAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp ---CCEEEEEET-TTEEEEEETTTTEEEESCC-
T ss_pred CCCCCcEEEECC-CCCEEEEECCCCCEEeCCCC
Confidence 468899999987 89999999999999999995
No 126
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.2e-05 Score=68.09 Aligned_cols=43 Identities=28% Similarity=0.447 Sum_probs=36.6
Q ss_pred CCCCcCCCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 11 LGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
.|-.-+-.+..||..|+...| .+|.+||.|..|..||||+|..
T Consensus 3 ~g~~~~d~~~~LP~GWE~~~d-~~Gr~YYvnh~tk~T~We~P~~ 45 (60)
T 2yse_A 3 SGSSGLDSELELPAGWEKIED-PVYGIYYVDHINRKTQYENPVL 45 (60)
T ss_dssp CCSCCCCCCSSCCSSEEEEEC-SSSCEEEEETTTTEEESSCHHH
T ss_pred CCccccCCCCCCCCCcEEEEC-CCCCEEEEeCCCCCeeccCCCc
Confidence 344445567889999999999 6899999999999999999964
No 127
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.76 E-value=0.00011 Score=92.74 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 477 FSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 477 f~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
...+++.|.+|+..++...-+||.++.|+|||.+....+..++.. .+.++||++||...++++.+.+.+.+
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 346899999999999988888999999999998755443333221 35689999999999999998887653
No 128
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=97.74 E-value=2.1e-05 Score=63.28 Aligned_cols=38 Identities=29% Similarity=0.632 Sum_probs=34.5
Q ss_pred CCCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 16 APDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
.+.+..||.+|+...| .+|.+||.|..|..|+||.|..
T Consensus 6 ~~~~~~LP~gWe~~~~-~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 6 SPASGPLPEGWEQAIT-PEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp STTTSCCCTTCEEEEC-TTSCEEEEETTTTEEECSCCSS
T ss_pred CCcCCCCCcCceeEEC-CCCCEEEEECCCCCEeCCCCCc
Confidence 4667789999999999 8999999999999999999974
No 129
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=97.72 E-value=1.9e-05 Score=62.25 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=33.1
Q ss_pred CCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
++..||.+|+...| .+|.+||.|..|..|+||.|...
T Consensus 4 ~~~~LP~GWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr~~ 40 (42)
T 2djy_A 4 GSGPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRLS 40 (42)
T ss_dssp CCSCCCSSEEEEEC-SSSCEEEEETTTTEEESSCTTTS
T ss_pred CcCCCCcCcEEEEC-CCCCEEEEECCCCCEeCCCCCCC
Confidence 44579999999998 89999999999999999999753
No 130
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=97.71 E-value=1.7e-05 Score=61.89 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=28.9
Q ss_pred CCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 21 TLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
.+|..|.++. -.+|..||||.+|++++||+|.
T Consensus 7 ~~~~~W~e~~-~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 7 GTEEIWVENK-TPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp CCCCSEEEEE-CTTSCEEEEETTTCCEESSCCS
T ss_pred CCCCCCEEEE-CCCCCEEEEECCCCCEEeCCCC
Confidence 4678999997 4689999999999999999996
No 131
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=97.71 E-value=2.6e-05 Score=63.59 Aligned_cols=41 Identities=29% Similarity=0.480 Sum_probs=35.9
Q ss_pred CCCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 16 APDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
..+|..||.+|+...|. +|.+||.|..|..|+||.|....|
T Consensus 6 ~~~~~~LP~gWe~~~~~-~Gr~Yy~nh~t~~T~W~~P~~~~p 46 (49)
T 2ysb_A 6 SGEDLPLPPGWSVDWTM-RGRKYYIDHNTNTTHWSHPLESGP 46 (49)
T ss_dssp CCCCCCCCTTEEEEECS-SSCEEEEETTTTEEESSCTTTSCC
T ss_pred CCCCCCCCCCceEEECC-CCCEEEEEcCCCCEEecCCCCCCC
Confidence 45677899999999995 899999999999999999986444
No 132
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=97.65 E-value=2.2e-05 Score=60.19 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=28.6
Q ss_pred CCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 22 LPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
....|.++.+.+ |..||+|.+|++++||+|..
T Consensus 4 ~~~~W~e~~~~~-G~~YYyN~~T~es~We~P~~ 35 (37)
T 1e0l_A 4 AVSEWTEYKTAD-GKTYYYNNRTLESTWEKPQE 35 (37)
T ss_dssp SSCSCEEEECTT-SCEEEEETTTTEEESSCCSS
T ss_pred CCCCeEEEECCC-CCEEEEECCCCCEEecCCCc
Confidence 456899999887 99999999999999999964
No 133
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.59 E-value=2.8e-05 Score=63.34 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=32.6
Q ss_pred CCCCCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
++..||..|+...|. +|.+||.|..|..||||+|..
T Consensus 10 ~~~~LP~GWe~~~d~-~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 10 EREGLPPGWERVESS-EFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CSSCCCTTEEEEEET-TTEEEEEETTTTEEESSCCCC
T ss_pred CCCCCCcCcEEEECC-CCCEEEEECCCCCEeccCcCC
Confidence 367899999999996 889999999999999999974
No 134
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.53 E-value=5.3e-05 Score=62.78 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=34.7
Q ss_pred CCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCC
Q 047890 17 PDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALP 56 (1134)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (1134)
.++..||.+|+..+| .+|.+||.|..|..|+||.|....
T Consensus 14 ~~~~~LP~GWe~~~~-~~Gr~Yyinh~tk~TtW~dPr~~~ 52 (53)
T 2jmf_A 14 INEGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPRPGA 52 (53)
T ss_dssp TSCSCCCTTEEEEEC-TTSCEEEEETTTCCEESSCCCSSC
T ss_pred CcCCCCCcCcEEEEc-CCCCEEEEeCCCCcEecCCCCCCC
Confidence 456789999999999 799999999999999999997543
No 135
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=97.46 E-value=4.5e-05 Score=70.61 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=34.3
Q ss_pred CCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
.+..||..|.+++|. +|.+||+|..|++|+||+|.....
T Consensus 8 ~~~~lp~~W~e~~~~-~Gr~YYyN~~T~~s~We~P~~~~~ 46 (92)
T 2l5f_A 8 TASGAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPDDLKT 46 (92)
T ss_dssp STTBTTTTEEEEECT-TSCEEEEETTTTEEESSCSGGGTC
T ss_pred cCCCCCCCcEEEEcC-CCCEEEEECCCCceecccCccccc
Confidence 455699999999998 899999999999999999976543
No 136
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=97.42 E-value=3.7e-05 Score=78.89 Aligned_cols=40 Identities=35% Similarity=0.738 Sum_probs=30.6
Q ss_pred CCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCC
Q 047890 17 PDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALP 56 (1134)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (1134)
++++.||.+|+...|.++|.+||+|..|+.||||+|...+
T Consensus 5 ~~~~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~~ 44 (166)
T 3tc5_A 5 ADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNS 44 (166)
T ss_dssp -----CCTTEEEEECTTTCCEEEEETTTCCEESSCC----
T ss_pred CCCCCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCCc
Confidence 3456799999999999999999999999999999997544
No 137
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.36 E-value=0.00013 Score=67.13 Aligned_cols=40 Identities=20% Similarity=0.491 Sum_probs=35.4
Q ss_pred cCCCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 15 YAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
.+..+..||..|+...| .+|.+||+|..|.+|+||+|...
T Consensus 3 ~~~~~~~LP~gWe~~~~-~~Gr~YY~n~~t~~t~W~~P~~~ 42 (90)
T 2kxq_A 3 LGGSPPDLPEGYEQRTT-QQGQVYFLHTQTGVSTWHDPRVP 42 (90)
T ss_dssp CCSSCCSCCSSCEEEEE-TTTEEEEEETTTTEEESSCSSSC
T ss_pred CCCCCCCCCCCcEEEEC-CCCCEEEEECCCCeEeeeccccc
Confidence 45667789999999999 58999999999999999999754
No 138
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.28 E-value=0.00016 Score=59.06 Aligned_cols=32 Identities=28% Similarity=0.602 Sum_probs=28.7
Q ss_pred CcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 25 PWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
+|.++... .|..||||++|++++||+|.....
T Consensus 8 ~W~e~~s~-~G~~YYyN~~T~eS~WekP~~~~~ 39 (50)
T 2dk1_A 8 RWVEGITS-EGYHYYYDLISGASQWEKPEGFQG 39 (50)
T ss_dssp CEEECCCS-TTCCCEEESSSCCEESSCCTTCCC
T ss_pred CeEEEECC-CCCEEEEECCCCCEEeeCChhhhh
Confidence 69999877 599999999999999999987655
No 139
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.25 E-value=0.00024 Score=59.75 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=33.3
Q ss_pred CCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 19 DPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
+..||.+|+.-+| .+|.+||.|.+|..|+||.|.....
T Consensus 12 ~~~LP~GWe~~~~-~~Gr~Yyinh~tk~TtWe~Pr~~~~ 49 (57)
T 2ysd_A 12 LGPLPENWEMAYT-ENGEVYFIDHNTKTTSWLDPRCLNK 49 (57)
T ss_dssp CCSCCSSEEEEEC-SSCCEEEEETTTTEEESSCTTTCSS
T ss_pred CCCCCcCcEEEEC-CCCCEEEEECCCCcEecCCCCCccc
Confidence 4569999999988 5899999999999999999986543
No 140
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.11 E-value=0.0013 Score=76.18 Aligned_cols=71 Identities=17% Similarity=0.057 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhcc
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGR 554 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~ 554 (1134)
.|+|+|+..+..+...+.+++..+-+.|||.++...++..+.. ..+..++++++++..|..+.+.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-----~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-----NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-----SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6899999999887666778889999999998766555443321 2456899999999999988888877653
No 141
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.09 E-value=0.00037 Score=55.96 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=35.2
Q ss_pred CCCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 16 APDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
.|++..||.+|+...+ .+|..||.|-.|..|+||.|...
T Consensus 3 ~P~~~~LP~GWe~~~~-~~gr~y~~n~~t~~t~W~dPr~~ 41 (46)
T 1jmq_A 3 IPDDVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPRKA 41 (46)
T ss_dssp CCSSCCCCTTBCCBCC-SSCCCBEEETTTTEEESSCTTTS
T ss_pred CCCCCCCCcCcEEEEc-CCCceEEEEecCCceeecCCCch
Confidence 5788899999999987 89999999999999999999643
No 142
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.09 E-value=0.00047 Score=57.29 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=33.9
Q ss_pred CCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 18 DDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
.+..||..|+...| .+|.+||.|-.|..|+||.|....+
T Consensus 8 ~~~~LP~GWe~~~~-~~G~~Yyinh~tk~TtwedPr~~~~ 46 (54)
T 1wmv_A 8 VAGDLPYGWEQETD-ENGQVFFVDHINKRTTYLDPRLAFT 46 (54)
T ss_dssp CSSCSCTTEEEEEC-TTSCEEEEESSSCCEESSCTTSSCC
T ss_pred cCCCCCcCcEEEEC-CCCCEEEEeCCCCCEeecCCCCccc
Confidence 34569999999989 6899999999999999999976544
No 143
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=97.05 E-value=0.00018 Score=63.97 Aligned_cols=34 Identities=29% Similarity=0.659 Sum_probs=30.7
Q ss_pred CCCCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 19 DPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
...||.+|+.+.+. +|.+||+|++|++|+||+|.
T Consensus 41 ~~~~~~~W~~~~~~-~Gr~YyyN~~T~~s~We~P~ 74 (75)
T 2jxw_A 41 KTAVKTVWVEGLSE-DGFTYYYNTETGESRWEKPD 74 (75)
T ss_dssp SSSCCCSEEEEEET-TTEEEEEETTTTEEESSCCC
T ss_pred ccCCCccEEEEECC-CCCEEEEECcCCCEeccCcC
Confidence 34689999999988 79999999999999999994
No 144
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=96.94 E-value=0.0005 Score=63.01 Aligned_cols=36 Identities=31% Similarity=0.566 Sum_probs=32.3
Q ss_pred CCCCCCcccccCCCCcceEeecCCcCceeeccCCCCC
Q 047890 20 PTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALP 56 (1134)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (1134)
..||..|+..+| .+|.+||+|..|..|+||+|....
T Consensus 11 ~~LP~gWe~~~~-~~Gr~Yy~n~~t~~t~W~~P~~~~ 46 (88)
T 1tk7_A 11 GPLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDPRTQG 46 (88)
T ss_dssp SSSSSSCCEEEE-TTTEEEEEETTTTEEEEESCCCTT
T ss_pred CCCCCCcEEEEC-CCCCEEEEECCCCCeEeecccccc
Confidence 359999999999 689999999999999999997543
No 145
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=96.78 E-value=0.00035 Score=64.58 Aligned_cols=33 Identities=33% Similarity=0.711 Sum_probs=29.4
Q ss_pred CCCCcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 22 LPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
||.+|+.+.+. +|.+||+|++|++|+||+|..+
T Consensus 53 ~~~~W~~~~~~-~Gr~Yy~N~~T~~s~We~P~~~ 85 (92)
T 2l5f_A 53 SKCPWKEYKSD-SGKTYYYNSQTKESRWAKPKEL 85 (92)
T ss_dssp HSCSEEEEECT-TCCEEEEETTTTEEESCCCHHH
T ss_pred cccceEEEECC-CCCEEEEECCCCCeeccCchhH
Confidence 68899999765 8999999999999999999644
No 146
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.75 E-value=0.0035 Score=63.89 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHH---------cCCCEEEEccCCCchhHHHHHH
Q 047890 481 TPIQAQTWPIAL---------QGRDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 481 rpiQ~eaI~~il---------~grdvLl~ApTGSGKTla~llp 514 (1134)
.+.|++++..+. .++.+++.+++|+|||..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i 58 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVAT 58 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHH
Confidence 456666666554 3577899999999999765443
No 147
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.74 E-value=0.0064 Score=74.33 Aligned_cols=73 Identities=16% Similarity=0.036 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS 556 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~ 556 (1134)
.|+++|+..+..+...+.+++..+-++|||.+....++..+.. ..+..++|++++...|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-----~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-----NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-----SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-----CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 5899999999887666778999999999998765544433331 135589999999999999998888776543
No 148
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=96.63 E-value=0.0013 Score=58.32 Aligned_cols=33 Identities=27% Similarity=0.575 Sum_probs=29.4
Q ss_pred CCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 24 KPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
..|.+++|.+ |.+||+|..|++|+||+|..+..
T Consensus 5 ~~W~e~~~~~-G~~YYyN~~T~~s~We~P~~~~~ 37 (75)
T 2jxw_A 5 GRWVEGITSE-GYHYYYDLISGASQWEKPEGFQG 37 (75)
T ss_dssp CCEEEEEETT-TEEEEEETTTTEEECSCCSSCSS
T ss_pred CCcEEEECCC-CCEEEEECCCCCEeecCCCcccc
Confidence 4799999985 99999999999999999986544
No 149
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=96.62 E-value=0.0011 Score=61.07 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=31.8
Q ss_pred CCCCCCcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 20 PTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
..||.+|+...| .+|.+||.|.+|..|+||.|...
T Consensus 54 ~~LP~gWe~~~~-~~G~~Yy~n~~t~~t~w~~Pr~~ 88 (90)
T 2kxq_A 54 GPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRLS 88 (90)
T ss_dssp CCCCSSCCEEEC-TTSCEEEEETTTTEEESSCTTTS
T ss_pred cccCCCceEEEC-CCCCEEEEECCCCcEecCCCCcC
Confidence 479999999998 78999999999999999999754
No 150
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=96.38 E-value=0.00079 Score=59.70 Aligned_cols=33 Identities=33% Similarity=0.615 Sum_probs=29.5
Q ss_pred CCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 21 TLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
.||.+|+...|. +|.+||+|.+|++|+||.|..
T Consensus 40 ~lp~gW~~~~~~-~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 40 LRENGWKAAKTA-DGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp HHHHTCEEEECT-TCCEEEEETTTTEEESSCCCC
T ss_pred CCCCeEEEEECC-CCCEEEEECCCCCEECCCCCC
Confidence 489999999775 699999999999999999964
No 151
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.36 E-value=0.0082 Score=62.18 Aligned_cols=38 Identities=29% Similarity=0.198 Sum_probs=27.2
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
++-+++.+++|+|||..++-.+..+.. .+.+++++.|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~-------~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL-------GKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-------TTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEeec
Confidence 455788999999999876544444332 35589999887
No 152
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.35 E-value=0.0049 Score=64.46 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=27.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
++-.++.+++|+|||.+++-.+..+.. .+.+++|+.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~-------~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI-------AKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-------CCCEEEEEEec
Confidence 344677899999999886655444432 46689999887
No 153
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=96.27 E-value=0.0016 Score=59.63 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=30.9
Q ss_pred CCCCCCCcccccCCCCcceEeecCCcCceeeccCC
Q 047890 19 DPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPA 53 (1134)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1134)
...||.+|+...| .+|.+||.|.+|..|+||.|.
T Consensus 54 ~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 54 EGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp SCSSCSSCEEEEE-TTTEEEEEETTTTEEESSSSC
T ss_pred ccccCCceEEEEC-CCCCEEEEECCCCcEeCCCCC
Confidence 4579999999998 679999999999999999984
No 154
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.12 E-value=0.0053 Score=65.30 Aligned_cols=38 Identities=16% Similarity=-0.026 Sum_probs=27.3
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTR 539 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTr 539 (1134)
+-.++.+++|+|||..++-.+..+.. .+.++||+.|.+
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~-------~g~kVli~k~~~ 66 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQF-------AKQHAIVFKPCI 66 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH-------TTCCEEEEECC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH-------CCCEEEEEEecc
Confidence 33567899999999886655555443 566899999874
No 155
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.10 E-value=0.0019 Score=56.27 Aligned_cols=33 Identities=21% Similarity=0.616 Sum_probs=28.7
Q ss_pred CCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 24 KPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
.+|..+- -..|.+||||++||+++||+|..+-.
T Consensus 20 t~W~~v~-T~dGR~fyyN~~Tk~S~WekP~eLk~ 52 (73)
T 2dk7_A 20 TPWCVVW-TGDERVFFYNPTTRLSMWDRPDDLIG 52 (73)
T ss_dssp SSCEEEE-ESSSCEEEEETTTTEECSSCCTTTTT
T ss_pred CCcEEEE-CCCCCEEEecCcccceeccCChHhcC
Confidence 4899984 67899999999999999999987664
No 156
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.99 E-value=0.017 Score=72.36 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCC
Q 047890 478 SSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSR 557 (1134)
Q Consensus 478 ~~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~ 557 (1134)
..|++.|++||.. ....++|.|..|||||.+.+.-+..++.... .....+|+|+.|+..|.++.+.+.++....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~- 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH---VAPWNILAITFTNKAAREMRERVQSLLGGA- 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC---CCGGGEEEEESSHHHHHHHHHHHHHHHGGG-
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhccc-
Confidence 4589999999875 3578999999999999986655555554211 133579999999999999999988764210
Q ss_pred CceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHH-HhcccCCC-CeEEEEEcchhh
Q 047890 558 LSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDIL-EMKKIDFG-QVSLLVLDEADR 614 (1134)
Q Consensus 558 i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL-~~~~l~l~-~l~lVVIDEAHr 614 (1134)
...+.|+|...|...+ ......+. .-++.|+|+.+.
T Consensus 84 ---------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 84 ---------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp ---------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred ---------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 0236788988876543 22221110 123567888764
No 157
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.99 E-value=0.013 Score=68.78 Aligned_cols=107 Identities=25% Similarity=0.187 Sum_probs=62.0
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHh
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~ 575 (1134)
-.++.++.|+|||..+. ..+. ...+|||+||++++..|.+.+.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~~-------------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVN--------FEEDLILVPGRQAAEMIRRRANASGII-------------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCC--------TTTCEEEESCHHHHHHHHHHHTTTSCC--------------------
T ss_pred EEEEEcCCCCCHHHHHH----HHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCcc--------------------
Confidence 36788999999997632 2211 135799999999999998887543110
Q ss_pred hcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 576 LDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 576 l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
....+-|.|.++++- .........+++||||||- |++.+ .+..++..+.. ..+|++--+
T Consensus 211 --~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 --VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp --CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred --ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 001234666665432 2222222357899999998 44433 33334444433 445555444
No 158
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.89 E-value=0.011 Score=63.21 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=50.2
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
+.-+|+.+++|+|||.+++-.+..+.. .+.+++|+.|...- +....+....++. .
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~-------~g~kVli~~~~~d~-----r~~~~i~srlG~~---------~---- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY-------ADVKYLVFKPKIDT-----RSIRNIQSRTGTS---------L---- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-------TTCCEEEEEECCCG-----GGCSSCCCCCCCS---------S----
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh-------cCCEEEEEEeccCc-----hHHHHHHHhcCCC---------c----
Confidence 445677899999999886655544433 45678888775310 0000111111110 0
Q ss_pred HhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhh
Q 047890 574 RELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 574 ~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrl 615 (1134)
..+.+.+...+++.+... +....+++|||||++.+
T Consensus 67 ------~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ------PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp ------CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGS
T ss_pred ------cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccC
Confidence 123345556666655432 22345899999999964
No 159
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.83 E-value=0.01 Score=73.46 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.|++-|++||.. ....++|.|..|||||.+.+.-+..++..... ...++|+|+.|+..+.++.+.+.++.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 489999999875 35678999999999999866555555553211 23579999999999999999998864
No 160
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=95.71 E-value=0.0052 Score=63.51 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 20 PTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
..||.+|+..++.++|..||.|++|+..+||+|+.
T Consensus 6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~ 40 (177)
T 1yw5_A 6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40 (177)
T ss_dssp CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred CCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence 34999999999999999999999999999999975
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.05 Score=61.28 Aligned_cols=41 Identities=7% Similarity=0.112 Sum_probs=25.4
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHh---CCCCceEEEEeccCc
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNE---MPPHRQTLMYTATWP 645 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~---l~~~~qiLllSATl~ 645 (1134)
...-+|||||+|.+.. ...+..+++. -....-+|++++|+.
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 3566899999999883 3444444432 122345667788854
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.62 E-value=0.045 Score=61.13 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=16.5
Q ss_pred CCEEEEccCCCchhHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llp 514 (1134)
..+++.+++|+|||..+-..
T Consensus 38 ~~lll~G~~GtGKT~la~~i 57 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAA 57 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 57999999999999765443
No 163
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.59 E-value=0.017 Score=61.49 Aligned_cols=39 Identities=18% Similarity=0.050 Sum_probs=26.3
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTR 539 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTr 539 (1134)
+.-.++.+++|+|||...+-.+..+.. .+.+++|+.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~-------~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIY-------AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH-------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-------cCCceEEEEecc
Confidence 444678899999999765444433322 456799999863
No 164
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=95.52 E-value=0.0093 Score=56.30 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=35.3
Q ss_pred CCCCCCCCCCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 16 APDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
+..+..||.+|+.-.|. +|.+||-|..|..|+||.|..++.
T Consensus 67 ~d~~~pLP~GWE~r~d~-~Gr~YfIdH~tktTtW~dPRl~~~ 107 (109)
T 3l4h_A 67 ADTRLELPRGWEIKTDQ-QGKSFFVDHNSRATTFIDPRIPLQ 107 (109)
T ss_dssp CCTTSCCCTTEEEEECT-TCCEEEEETTTTEEESSCSCCSCC
T ss_pred CCCCCCCCCCCeEEECC-CCCEEEEeCCCCCEeeCCCCcccc
Confidence 45566799999999888 899999999999999999975544
No 165
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.48 E-value=0.016 Score=71.26 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHc--CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCC
Q 047890 479 SPTPIQAQTWPIALQ--GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSS 556 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~--grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~ 556 (1134)
.+|..|.+||..++. ...++|.|+-|.|||.+..+.+..+ . ..++|.+|+.+-+..+.+.+.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~---------~~~~vtAP~~~a~~~l~~~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-A---------GRAIVTAPAKASTDVLAQFAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-S---------SCEEEECSSCCSCHHHHHHHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-H---------hCcEEECCCHHHHHHHHHHhhC-----
Confidence 589999999998887 3457889999999996654443322 1 1469999997655543332211
Q ss_pred CCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCce
Q 047890 557 RLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQ 636 (1134)
Q Consensus 557 ~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~q 636 (1134)
.|-+..|+.+.. .+...++||||||=.+- .+.++.++..+ .
T Consensus 240 ------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~----~ 280 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF----P 280 (671)
T ss_dssp ------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----S
T ss_pred ------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----C
Confidence 133445655432 23358899999998654 45666666533 2
Q ss_pred EEEEeccC
Q 047890 637 TLMYTATW 644 (1134)
Q Consensus 637 iLllSATl 644 (1134)
.++||.|+
T Consensus 281 ~v~~~tTv 288 (671)
T 2zpa_A 281 RTLLTTTV 288 (671)
T ss_dssp EEEEEEEB
T ss_pred eEEEEecC
Confidence 57777774
No 166
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.47 E-value=0.09 Score=59.31 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=16.9
Q ss_pred CCCEEEEccCCCchhHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llp 514 (1134)
...++|.+++|+|||..+-..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~ 64 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLV 64 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 467999999999999875443
No 167
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.45 E-value=0.043 Score=64.35 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=71.3
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA-PT-RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv-PT-reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
-+++++++|+|||.++...+..+.. .+.+|++++ .+ +.-+ .+.+..+....++.+.......
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~-------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~------ 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKK-------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ------ 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH-------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC------
Confidence 3667799999999887665544432 344565554 33 2211 2233333333334332221111
Q ss_pred HhhcCCCcEEEeChHHHH-HHHHhcccCCCCeEEEEEcchhhhh---ccCchHHHHHHHHhCCCCceEEEEeccCchhHH
Q 047890 574 RELDQGADIVVATPGRLN-DILEMKKIDFGQVSLLVLDEADRML---DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVR 649 (1134)
Q Consensus 574 ~~l~~~~dIIVaTPerL~-~lL~~~~l~l~~l~lVVIDEAHrll---~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~ 649 (1134)
.|..+. ..+. .+...++++||||++-++. +..+...+..++..+.+..-++.++|+...+..
T Consensus 163 ------------dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 163 ------------NPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp ------------CHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred ------------CHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 122221 1121 2223578899999998643 333556666777766666668888998766666
Q ss_pred HHHHhh
Q 047890 650 KIASDL 655 (1134)
Q Consensus 650 ~l~~~~ 655 (1134)
.++..+
T Consensus 229 ~~a~~f 234 (433)
T 3kl4_A 229 DLASRF 234 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 168
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.38 E-value=0.042 Score=56.69 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=16.0
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
..+++.+++|+|||..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 6799999999999986543
No 169
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.38 E-value=0.09 Score=59.58 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=22.1
Q ss_pred EEEEcchhhhhccCchHH-HHHHHHhCCCCceEEEEec
Q 047890 606 LLVLDEADRMLDMGFEPQ-IRKIVNEMPPHRQTLMYTA 642 (1134)
Q Consensus 606 lVVIDEAHrll~~gf~~~-i~~IL~~l~~~~qiLllSA 642 (1134)
+|||||+|.+........ +..++... ....+|+.|.
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 899999999876533444 55555554 3443444433
No 170
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.37 E-value=0.12 Score=52.81 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=25.8
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEec
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTA 642 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSA 642 (1134)
....+|||||+|.+... ....+..+++.......+|++|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999987543 24456666666555554554443
No 171
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.32 E-value=0.066 Score=53.53 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
...+||.+++|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 35789999999999976543
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.14 E-value=0.25 Score=49.23 Aligned_cols=19 Identities=32% Similarity=0.207 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
..+|+.+++|+|||..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 5699999999999976543
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.08 E-value=0.15 Score=55.37 Aligned_cols=19 Identities=21% Similarity=0.029 Sum_probs=15.7
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
..+|+.+++|+|||..+-.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4699999999999987543
No 174
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.04 E-value=0.032 Score=60.00 Aligned_cols=39 Identities=18% Similarity=0.096 Sum_probs=27.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTR 539 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTr 539 (1134)
++-.++.+++|+|||..++-.+..+. ..+.+++|+-|.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~-------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ-------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH-------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH-------HCCCeEEEEeecC
Confidence 45567789999999987555444433 2567899998863
No 175
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=95.00 E-value=0.0085 Score=53.00 Aligned_cols=30 Identities=40% Similarity=0.784 Sum_probs=27.4
Q ss_pred CcccccCCCCcceEeecCCcCceeeccCCCC
Q 047890 25 PWKGLIDGSTGLLYYWNPETNVTQYEKPAAL 55 (1134)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (1134)
.|+...|. +|.+||+|..|++|+||+|...
T Consensus 3 ~W~~~~~~-~Gr~YY~n~~T~~s~W~~P~~~ 32 (75)
T 1o6w_A 3 IWKEAKDA-SGRIYYYNTLTKKSTWEKPKEL 32 (75)
T ss_dssp CEEEEECT-TCCEEEEETTTTEEESSCCHHH
T ss_pred CCeEEECC-CCCeEEEECCCCCEEeecchhh
Confidence 69999997 8999999999999999999744
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.84 E-value=0.011 Score=59.08 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchhHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~l 512 (1134)
.+..+++.+++|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 67789999999999997543
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.78 E-value=0.079 Score=59.73 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEccCCCchhHHHHHHH
Q 047890 480 PTPIQAQTWPIAL----QGR---DIVAIAKTGSGKTLGYLIPA 515 (1134)
Q Consensus 480 prpiQ~eaI~~il----~gr---dvLl~ApTGSGKTla~llpa 515 (1134)
+.|||.+++..+. .++ .+|+.++.|+|||.++...+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 4688888876665 332 38899999999998755443
No 178
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.65 E-value=0.15 Score=53.42 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=74.6
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHH-HHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRE-LATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTre-La~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
-.+++....|.|||.+++-.++..+. .+.+|+|+--.+. ...-=.+.++++ .+.+...-.+-......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g-------~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~ 97 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG-------HGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQN 97 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH-------TTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCC
Confidence 46888899999999999888887775 5678888832221 000001122333 12221111111000000
Q ss_pred HhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhhhhccCc--hHHHHHHHHhCCCCceEEEEeccCchhHHHH
Q 047890 574 RELDQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGF--EPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651 (1134)
Q Consensus 574 ~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHrll~~gf--~~~i~~IL~~l~~~~qiLllSATl~~~v~~l 651 (1134)
..- ++. .....++.+ ...+.-..+++|||||+-..+..++ .+.+..++...+...-+|+.+--.+.++.++
T Consensus 98 ~~~----~~~--~a~~~l~~a-~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 98 REA----DTA--ACMAVWQHG-KRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHH----HHH--HHHHHHHHH-HHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred cHH----HHH--HHHHHHHHH-HHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 000 000 001111111 1223346799999999987655553 4566777777777776777766677777666
Q ss_pred HH
Q 047890 652 AS 653 (1134)
Q Consensus 652 ~~ 653 (1134)
+.
T Consensus 171 AD 172 (196)
T 1g5t_A 171 AD 172 (196)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 179
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.57 E-value=0.082 Score=59.84 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHHH
Q 047890 496 DIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~l 512 (1134)
.++|.+++|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997643
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.38 E-value=0.098 Score=57.57 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
..+|+.+++|+|||.++-.
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999987544
No 181
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.36 E-value=0.041 Score=72.82 Aligned_cols=124 Identities=19% Similarity=0.118 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCC
Q 047890 479 SPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRL 558 (1134)
Q Consensus 479 ~prpiQ~eaI~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i 558 (1134)
++|+-|.++|... +.+++|.|.-|||||.+.+-=++.++.... ......++|||+.|+..+..+.+.+.+.+... +
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~-~ 85 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-NPIDVDRLLVVTFTNASAAEMKHRIAEALEKE-L 85 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-SCCCGGGEEEECSSHHHHHHHHHHHHHHHHHH-H
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-CCCCccceEEEeccHHHHHHHHHHHHHHHHHH-h
Confidence 5899999998753 789999999999999885544444443211 11234589999999999999998887743210 0
Q ss_pred ceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcc-c--CC-CCeEEEEEcchh
Q 047890 559 SCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKK-I--DF-GQVSLLVLDEAD 613 (1134)
Q Consensus 559 ~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~-l--~l-~~l~lVVIDEAH 613 (1134)
. . ..........+..-..+-|.|...|+..+.... . .+ ..+. |+||..
T Consensus 86 ~----~-~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~--~~d~~~ 137 (1232)
T 3u4q_A 86 V----Q-RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFR--IADQTE 137 (1232)
T ss_dssp H----H-STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCE--ECCHHH
T ss_pred h----c-CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCe--eCCHHH
Confidence 0 0 001111111111224578899988866543322 1 11 1233 778765
No 182
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.34 E-value=0.026 Score=59.14 Aligned_cols=20 Identities=20% Similarity=0.018 Sum_probs=16.5
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
+..+|+.+++|+|||..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 57799999999999976543
No 183
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.11 E-value=0.077 Score=55.57 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=25.7
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
++-.++.+++|+|||...+-.+-.+.. .+.+++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH-------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEccc
Confidence 455677899999999664443333332 35689999875
No 184
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.03 E-value=0.12 Score=58.04 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=16.4
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
+..++|.++.|+|||..+-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999976443
No 185
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.97 E-value=0.12 Score=60.70 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=66.2
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA-PT-RELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL 573 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv-PT-reLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l 573 (1134)
-+++++++|+|||.++...+..+.+ .+.++++++ .+ +.-+ .+.+..|....++.+.....+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~-------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~------ 165 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQK-------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEK------ 165 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCC------
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHH-------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCC------
Confidence 3677899999999987665544322 344555554 33 2222 2334444444344433222111
Q ss_pred HhhcCCCcEEEeChHHHH-HHHHhcccCCCCeEEEEEcchhhhhcc-CchHHHHHHHHhCCCCceEEEEeccCchhHHHH
Q 047890 574 RELDQGADIVVATPGRLN-DILEMKKIDFGQVSLLVLDEADRMLDM-GFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKI 651 (1134)
Q Consensus 574 ~~l~~~~dIIVaTPerL~-~lL~~~~l~l~~l~lVVIDEAHrll~~-gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l 651 (1134)
.|..+. +.+.. +....+++||||.+=++... .....+..+.....+..-++.+.||...+....
T Consensus 166 ------------dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~ 231 (443)
T 3dm5_A 166 ------------DAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ 231 (443)
T ss_dssp ------------CHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH
T ss_pred ------------CHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH
Confidence 121111 11211 11124678999988654321 233445555555555556777888866555555
Q ss_pred HHhh
Q 047890 652 ASDL 655 (1134)
Q Consensus 652 ~~~~ 655 (1134)
+..+
T Consensus 232 a~~f 235 (443)
T 3dm5_A 232 ALAF 235 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.93 E-value=0.18 Score=59.15 Aligned_cols=22 Identities=18% Similarity=0.024 Sum_probs=17.2
Q ss_pred CCCEEEEccCCCchhHHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPA 515 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpa 515 (1134)
...+++.+++|+|||..+-..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia 151 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIG 151 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3579999999999998754433
No 187
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.92 E-value=0.11 Score=65.43 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cceecc
Q 047890 692 LQQILRAQERGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VAARGL 765 (1134)
Q Consensus 692 L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl~~GL 765 (1134)
+..++..+..+.++||.++|+..+..+++.+.+ ++.+..+||+++.+++..+++.+.+|+.+|||+|. .+...+
T Consensus 407 ll~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~ 486 (780)
T 1gm5_A 407 QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 486 (780)
T ss_dssp HHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh
Confidence 344444555678999999999988887776632 57899999999999999999999999999999994 555567
Q ss_pred ccCcceEEEe
Q 047890 766 DIKDIRVVIN 775 (1134)
Q Consensus 766 DIp~v~~VI~ 775 (1134)
++.++.+||.
T Consensus 487 ~~~~l~lVVI 496 (780)
T 1gm5_A 487 HFKNLGLVII 496 (780)
T ss_dssp CCSCCCEEEE
T ss_pred hccCCceEEe
Confidence 7888887774
No 188
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.87 E-value=0.041 Score=61.59 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=19.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILL 519 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L 519 (1134)
...+++.+++|+|||..+...+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999987655444443
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.40 E-value=0.087 Score=58.62 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=26.3
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
....+|||||+|.+........+..+++.......+|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999998862224455666666655556555533
No 190
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.07 E-value=0.31 Score=51.39 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=33.6
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
.+.-++|.+++|+|||..++..+...+. .+.+++++.-. +...++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~-------~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK-------MGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH-------TTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 4567889999999999876655555443 24467777643 3345555555544
No 191
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.84 E-value=0.52 Score=48.89 Aligned_cols=26 Identities=31% Similarity=0.133 Sum_probs=19.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~ 518 (1134)
.+.-++|.+++|+|||..+...+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35678889999999997655544333
No 192
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.69 E-value=0.23 Score=57.04 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=63.5
Q ss_pred HHHHHhcCCEEEEEeCcHHHHHHHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-c----ceecc
Q 047890 695 ILRAQERGSRVIIFCSTKRLCDQLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-V----AARGL 765 (1134)
Q Consensus 695 llk~~~~~~kvLVF~nT~~~ae~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-v----l~~GL 765 (1134)
++.....+.++||.++++..+..+++.+.+ ++.+..++|+.+..++...++.+.+++.+|+|+|. . +.. +
T Consensus 57 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~ 135 (414)
T 3oiy_A 57 ALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-L 135 (414)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-H
T ss_pred HHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-h
Confidence 344445678999999999999998888754 67899999999999999999999999999999994 2 222 5
Q ss_pred ccCcceEEEe
Q 047890 766 DIKDIRVVIN 775 (1134)
Q Consensus 766 DIp~v~~VI~ 775 (1134)
++..+++||.
T Consensus 136 ~~~~~~~iVi 145 (414)
T 3oiy_A 136 SQKRFDFVFV 145 (414)
T ss_dssp TTCCCSEEEE
T ss_pred ccccccEEEE
Confidence 5566777664
No 193
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.60 E-value=0.19 Score=56.38 Aligned_cols=42 Identities=12% Similarity=0.282 Sum_probs=29.0
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccC
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl 644 (1134)
.+..+|||||+|. ++......+.++++.......+|+.|-..
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3678999999998 55445667777788776666555555443
No 194
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.43 E-value=0.82 Score=47.03 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=22.6
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
..-.+|||||+|.+... ....+..++........+|+.|
T Consensus 125 ~~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 34579999999986432 2344455555544444444444
No 195
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.30 E-value=0.45 Score=51.58 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~l 512 (1134)
..+.+||.+++|+|||..+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 34679999999999997643
No 196
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.28 E-value=0.35 Score=53.97 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
+.+||.+|+|+|||..+-.
T Consensus 52 ~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CEEEEECSSSSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5699999999999986543
No 197
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.19 E-value=0.38 Score=54.56 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=31.3
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEA 549 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el 549 (1134)
+.-+||.+++|+|||..++-.+...+. .+..|+|++-. .-..|+...+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN-------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHH
Confidence 355888899999999876665555543 35578888753 2234444443
No 198
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.15 E-value=0.47 Score=46.45 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.0
Q ss_pred HcCCCEEEEccCCCchhHHH
Q 047890 492 LQGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~ 511 (1134)
.....+|+.+++|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35678999999999999764
No 199
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.02 E-value=0.13 Score=54.00 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~ll 513 (1134)
-+|+.++.|||||+.++.
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 368899999999987544
No 200
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.89 E-value=0.41 Score=53.35 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
....+|||||+|.+... ....+.++++.......+|+++
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35689999999987543 2355666677666555555544
No 201
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.80 E-value=0.47 Score=52.14 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=25.3
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
....+|||||+|.+... ....+..+++..+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999987543 2445666666665555444443
No 202
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.75 E-value=0.43 Score=54.39 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=14.7
Q ss_pred CCEEE--EccCCCchhHHHHH
Q 047890 495 RDIVA--IAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl--~ApTGSGKTla~ll 513 (1134)
..++| .++.|+|||..+-.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHH
Confidence 35777 79999999986443
No 203
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.64 E-value=0.64 Score=54.63 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=30.0
Q ss_pred HHHHHHc----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 487 TWPIALQ----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 487 aI~~il~----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.|..++. +.-++|.+++|+|||..++..+...+.. .+..|+|+.-
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~------~g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK------TNENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH------SSCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEEEC
Confidence 4555553 3567888999999998776665555432 2446777764
No 204
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.54 E-value=0.44 Score=53.11 Aligned_cols=18 Identities=28% Similarity=0.154 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~l 512 (1134)
..+||.+++|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999997643
No 205
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.24 E-value=0.28 Score=48.04 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=16.8
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 047890 491 ALQGRDIVAIAKTGSGKTLG 510 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla 510 (1134)
+.....+|+.+++|+|||.+
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34567899999999999965
No 206
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.18 E-value=0.73 Score=53.98 Aligned_cols=45 Identities=18% Similarity=-0.006 Sum_probs=29.8
Q ss_pred HHHHHHcC----CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 487 TWPIALQG----RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 487 aI~~il~g----rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.|..++.| .-++|.+++|+|||..++-.+...+.. .+..|+|++-
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~------~g~~vl~~sl 237 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK------EGVGVGIYSL 237 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT------TCCCEEEEES
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEEC
Confidence 35555533 457888999999998776665555431 2446777765
No 207
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.16 E-value=0.21 Score=58.79 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~l 512 (1134)
..+|+.+|+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999997643
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.15 E-value=0.73 Score=52.83 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
.+.+||.+++|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3689999999999997643
No 209
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.52 E-value=1 Score=51.06 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.0
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
+.+||.+|+|+|||+.+-.
T Consensus 85 ~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCEEEECSTTSCHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 5799999999999987543
No 210
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.32 E-value=1 Score=50.16 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=27.4
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
.....+|||||||.|.... .+.+.++++.-+....+|++|
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3568899999999976433 455667777766666444444
No 211
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.25 E-value=1.1 Score=47.61 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
.+.+|+.+++|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568999999999997644
No 212
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.21 E-value=0.33 Score=53.34 Aligned_cols=39 Identities=21% Similarity=0.103 Sum_probs=24.8
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.|.-++|.+++|+|||..+...+...... .+..++++.-
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~------~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA------MGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT------SCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH------cCCeEEEEeC
Confidence 45678889999999998755544433221 2435666653
No 213
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.19 E-value=0.72 Score=60.61 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=66.8
Q ss_pred HHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeec-ccceecccc
Q 047890 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVAT-DVAARGLDI 767 (1134)
Q Consensus 694 ~llk~~~~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVAT-dvl~~GLDI 767 (1134)
.++.....+.++||.|+|+..+..+++.+.+ .+.+..+++..+.+++..+++.+.+|+++|+|+| ..+...+++
T Consensus 644 aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~ 723 (1151)
T 2eyq_A 644 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 723 (1151)
T ss_dssp HHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCC
T ss_pred HHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccc
Confidence 4444456678999999999999888877643 3568889999999999999999999999999999 566666788
Q ss_pred CcceEEEe
Q 047890 768 KDIRVVIN 775 (1134)
Q Consensus 768 p~v~~VI~ 775 (1134)
.++.+||.
T Consensus 724 ~~l~lvIi 731 (1151)
T 2eyq_A 724 KDLGLLIV 731 (1151)
T ss_dssp SSEEEEEE
T ss_pred cccceEEE
Confidence 88887774
No 214
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.03 E-value=0.61 Score=60.96 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-c----cee
Q 047890 693 QQILRAQERGSRVIIFCSTKRLCDQLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-V----AAR 763 (1134)
Q Consensus 693 ~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-v----l~~ 763 (1134)
..++.....+.++||.++|++.+..+++.|.+ ++.+..+||+++..++...++.+.+++.+|||+|. . +..
T Consensus 112 ~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~ 191 (1104)
T 4ddu_A 112 MTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK 191 (1104)
T ss_dssp HHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH
T ss_pred HHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh
Confidence 33444456778999999999999999998866 45799999999999999999999999999999993 2 222
Q ss_pred ccccCcceEEEe
Q 047890 764 GLDIKDIRVVIN 775 (1134)
Q Consensus 764 GLDIp~v~~VI~ 775 (1134)
+++.++++||.
T Consensus 192 -l~~~~l~~lVi 202 (1104)
T 4ddu_A 192 -LSQKRFDFVFV 202 (1104)
T ss_dssp -HHTSCCSEEEE
T ss_pred -hcccCcCEEEE
Confidence 56677787774
No 215
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.85 E-value=0.55 Score=56.18 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=25.9
Q ss_pred CCeEEEEEcchhhhhccC--chHHHHHHHHhCCCCceEEEEeccC
Q 047890 602 GQVSLLVLDEADRMLDMG--FEPQIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~g--f~~~i~~IL~~l~~~~qiLllSATl 644 (1134)
....+|||||+|.+.... ....+..+++.. ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 356799999999986532 234555555543 34477777763
No 216
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.77 E-value=0.92 Score=50.10 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
.+.+|+.+|+|+|||+.+-
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CceEEEECCCCcCHHHHHH
Confidence 4679999999999998644
No 217
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.56 E-value=1.4 Score=51.13 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
.+.+|+.+|.|+|||+.+-.
T Consensus 182 prGvLL~GPPGTGKTllAkA 201 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARA 201 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHH
Confidence 37899999999999986443
No 218
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.54 E-value=0.77 Score=50.27 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=24.7
Q ss_pred CeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 603 QVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 603 ~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
...+|||||+|.+.... ...+.++++..+....+|++|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999875432 334556666665565555544
No 219
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.46 E-value=0.75 Score=50.67 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~l 512 (1134)
..+|+.+++|+|||..+-
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 679999999999997643
No 220
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.45 E-value=1.3 Score=49.62 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=24.7
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
.....+|||||+|.+... ....+.++++..+....+|+.|
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 345689999999987543 2345556666655555344443
No 221
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.40 E-value=1 Score=50.29 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~l 512 (1134)
+.+||.+|+|+|||+.+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999997643
No 222
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.17 E-value=0.5 Score=52.92 Aligned_cols=65 Identities=12% Similarity=-0.006 Sum_probs=36.6
Q ss_pred HHHHHHc-----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH-HHHHHHHHHHh
Q 047890 487 TWPIALQ-----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL-ATQIQDEANKF 552 (1134)
Q Consensus 487 aI~~il~-----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL-a~Q~~~el~kl 552 (1134)
.|..++. +.-++|.+++|+|||..++..+...+.... ....+.+++||.-...+ ..++.+.++++
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc-cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4566664 356888999999999876655443221000 00114578888754322 34555555554
No 223
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.06 E-value=0.82 Score=54.40 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=26.7
Q ss_pred eEEEEEcchhhhhccC----------chHHHHHHHHhCCCCceEEEEeccC
Q 047890 604 VSLLVLDEADRMLDMG----------FEPQIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 604 l~lVVIDEAHrll~~g----------f~~~i~~IL~~l~~~~qiLllSATl 644 (1134)
..+|+|||+|.|.... ....+..+++.+.....++++.||-
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn 348 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEES
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecC
Confidence 3689999999887531 2234455556555555677777774
No 224
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.00 E-value=2 Score=48.29 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.9
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
+.+|+.+|+|+|||..+-.
T Consensus 71 ~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4799999999999987543
No 225
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.69 E-value=1.6 Score=49.57 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
.+.+||.+++|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998654
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.68 E-value=1.8 Score=44.59 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=23.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
+.-++|.+++|+|||..+...+. . .+..++++.-
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~-------~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---L-------SGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---H-------HCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---H-------cCCcEEEEEC
Confidence 45678899999999987655443 1 2346777763
No 227
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.50 E-value=0.71 Score=48.57 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=33.4
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
.+.-+++.+++|+|||..++-.++..+.. .+..++|++-. +-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~------~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE------YGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH------HCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh------cCCCceeeccc-CCHHHHHHHHHHc
Confidence 34668999999999998776655554432 23457777643 3345555555543
No 228
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.29 E-value=0.56 Score=64.18 Aligned_cols=56 Identities=30% Similarity=0.278 Sum_probs=38.2
Q ss_pred HHHHHc------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 488 WPIALQ------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 488 I~~il~------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
+..++. ++.+++.+|+|+|||..++..+....+ .+.+|+|+.... +..+.+ +++++
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-------~G~~v~Fi~~e~-~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEH-ALDPIY--ARKLG 1476 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEECTTS-CCCHHH--HHHTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEEEccc-ccCHHH--HHHcC
Confidence 677776 578999999999999887666555443 456788888653 322333 55554
No 229
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.27 E-value=2 Score=47.97 Aligned_cols=39 Identities=21% Similarity=0.408 Sum_probs=26.9
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
....++||||+|.|... ....+.++++..+....+|+++
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987543 3455677777776666555444
No 230
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.24 E-value=0.87 Score=50.82 Aligned_cols=57 Identities=14% Similarity=-0.088 Sum_probs=35.2
Q ss_pred HHHHHHc----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 487 TWPIALQ----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 487 aI~~il~----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
.|..++. +.-+||.+++|+|||..++-.++..+. .+..+||++-. +-..++...+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-------~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEECC-CCHHHHHHHHHH
Confidence 4555553 356888999999999876655555443 23578888753 333444444443
No 231
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.94 E-value=0.56 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=18.6
Q ss_pred HcCCCEEEEccCCCchhHHHHHHH
Q 047890 492 LQGRDIVAIAKTGSGKTLGYLIPA 515 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~llpa 515 (1134)
..|.-++|.+++|+|||..+.+.+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 356778899999999998655444
No 232
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.80 E-value=0.57 Score=50.37 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ 511 (1134)
....+|+.+++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999764
No 233
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.70 E-value=1.3 Score=51.89 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
.+.+||.+|+|+|||+.+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999997643
No 234
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.55 E-value=0.31 Score=55.44 Aligned_cols=38 Identities=24% Similarity=0.146 Sum_probs=27.0
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
+.-++|.++.|+|||..++..+..... .+.+++|+.-.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~-------~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA-------AGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEECC
Confidence 356888999999999887766655543 24467777643
No 235
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.29 E-value=0.77 Score=50.19 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHHH
Q 047890 496 DIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~l 512 (1134)
.+|+.++.|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997643
No 236
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.23 E-value=14 Score=40.59 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcccCCCCeEEEEEcchhhhhc---cCchHHHHHHHHhCCCCceEEEEecc
Q 047890 587 PGRLNDILEMKKIDFGQVSLLVLDEADRMLD---MGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 587 PerL~~lL~~~~l~l~~l~lVVIDEAHrll~---~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
...+++.+..... .--+|||||+|.+.. ..+...+..++.... .. .++++++
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~i~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RI-KFIMSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TE-EEEEEES
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-Ce-EEEEEcC
Confidence 3445555543211 234899999999864 346666666665542 33 3444544
No 237
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.00 E-value=2.1 Score=50.17 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~l 512 (1134)
+.+|+.+|.|+|||+.+-
T Consensus 216 rGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeeEEECcCCCCHHHHHH
Confidence 789999999999997643
No 238
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.97 E-value=2.2 Score=46.47 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
.+.+|+.+|+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4689999999999997643
No 239
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.90 E-value=1.6 Score=47.52 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=20.1
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHH
Q 047890 491 ALQGRDIVAIAKTGSGKTLGYLIPAF 516 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla~llpal 516 (1134)
+..+.-++|.++.|+|||..++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44667789999999999987655444
No 240
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.88 E-value=2 Score=48.48 Aligned_cols=21 Identities=43% Similarity=0.414 Sum_probs=17.1
Q ss_pred cCCCEEEEccCCCchhHHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ll 513 (1134)
....+|+.+|+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346899999999999986543
No 241
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.72 E-value=1 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCCchhHHHHHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAF 516 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal 516 (1134)
.+.-++|.+++|+|||..+...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346688999999999987655443
No 242
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.55 E-value=0.74 Score=52.77 Aligned_cols=45 Identities=22% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHc------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 487 TWPIALQ------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 487 aI~~il~------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
.|..++. +.-++|.++.|+|||..++-.+...+. .+.+|+||.-.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~-------~g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK-------AGGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH-------CCCeEEEEECC
Confidence 4566665 356788899999999877665555443 23467777654
No 243
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=86.53 E-value=2.6 Score=41.81 Aligned_cols=74 Identities=23% Similarity=0.416 Sum_probs=53.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH---Hhhc-CCCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL---RELD-QGADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l---~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
..++||+|+++..++.+.+.|.+. ++.+..++++....... ..+. ....|+|+| + +-...+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~-~~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----D-VAARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----G-GGTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----C-hhhcCCchhcC
Confidence 458999999999999999999875 46788888887544332 2333 347899999 2 22446677788
Q ss_pred EEEEEcch
Q 047890 605 SLLVLDEA 612 (1134)
Q Consensus 605 ~lVVIDEA 612 (1134)
++||+-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88887443
No 244
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.24 E-value=2.1 Score=50.24 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=16.3
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
+.+|+.+|.|+|||+.+-.
T Consensus 216 rGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 7899999999999986443
No 245
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.21 E-value=1.1 Score=52.62 Aligned_cols=45 Identities=18% Similarity=-0.005 Sum_probs=31.7
Q ss_pred HHHHHHc----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 487 TWPIALQ----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 487 aI~~il~----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
.|..++. +.-+||.|++|+|||..++-.+...+. .+.+|+|++--
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~-------~g~~vl~fSlE 234 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------NDDVVNLHSLE 234 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH-------TTCEEEEECSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH-------cCCEEEEEECC
Confidence 4555553 355888999999999887766666554 24578888753
No 246
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=86.15 E-value=2.5 Score=43.45 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=53.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH---hhc-CCCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR---ELD-QGADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~---~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
..++||+|+++..++.+.+.|++. ++.+..++|+........ .+. ....|+|+| +.+ ...+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~-~~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVA-SKGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHH-HTTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cch-hcCCCcccC
Confidence 347999999999999999999876 467888888876543332 333 357899999 333 346677888
Q ss_pred EEEEEcc
Q 047890 605 SLLVLDE 611 (1134)
Q Consensus 605 ~lVVIDE 611 (1134)
++||.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887743
No 247
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.05 E-value=3.7 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.141 Sum_probs=16.1
Q ss_pred CEEEEccCCCchhHHHHHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFI 517 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~ 517 (1134)
-+.++++.|+|||..+...+..
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3566799999999876655443
No 248
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.04 E-value=2.6 Score=49.17 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.2
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
+.+|+.+|.|+|||+.+-.
T Consensus 217 rGvLLyGPPGTGKTlLAkA 235 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKA 235 (437)
T ss_dssp SEEEEESSTTTTHHHHHHH
T ss_pred CCCceECCCCchHHHHHHH
Confidence 7899999999999986443
No 249
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.03 E-value=1.3 Score=56.28 Aligned_cols=21 Identities=33% Similarity=0.189 Sum_probs=16.8
Q ss_pred CCEEEEccCCCchhHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPA 515 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpa 515 (1134)
.++|+++++|+|||..+-..+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 579999999999998654433
No 250
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=85.78 E-value=1.2 Score=45.97 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHcCC--CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHH
Q 047890 481 TPIQAQTWPIALQGR--DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 481 rpiQ~eaI~~il~gr--dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~ 543 (1134)
.+-|..++..++... -.||.+.-|++||...+.-++...+. .+..|.||+|+.+-..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~------~Gr~V~vLAp~~~s~~ 94 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE------QGREVQIIAADRRSQM 94 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH------TTCCEEEECSTTHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh------cCeEEEEEcCchHHHH
Confidence 467899998887553 46777999999999876655555443 6789999999955443
No 251
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.71 E-value=4.2 Score=44.70 Aligned_cols=17 Identities=12% Similarity=-0.097 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHH
Q 047890 494 GRDIVAIAKTGSGKTLG 510 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla 510 (1134)
+..++|.++.|+|||..
T Consensus 31 ~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 57788999999999975
No 252
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.21 E-value=2 Score=51.87 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=27.0
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
.-++||.+.||||||.+.-..++.++... .....++++|=|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~---sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKS---TPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhC---CCcceEEEEeCCC
Confidence 47899999999999987655555554321 1223455555554
No 253
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.93 E-value=3.6 Score=48.02 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.0
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
+.+|+.+|.|+|||+.+-.
T Consensus 207 rGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp CEEEEESCTTTTHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6799999999999986443
No 254
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=84.60 E-value=2.7 Score=49.95 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=40.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccC
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRS 555 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~ 555 (1134)
.+...++.+-|||+||+++.. +++. ....+||||++..+|.+++++|+.|...
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~----l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE----IAER------HAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH----HHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHH----HHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 345678899999999976332 2222 2336899999999999999999998643
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.37 E-value=1 Score=50.00 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=17.8
Q ss_pred CCEEEEccCCCchhHHHHHHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~ 518 (1134)
+-+++++++|+|||.++...+..+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 457788999999998766555433
No 256
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.28 E-value=0.93 Score=49.96 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
+.+|+.+|+|+|||..+-.
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688899999999976443
No 257
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.25 E-value=1.1 Score=51.26 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=29.2
Q ss_pred HHHHHHc------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 487 TWPIALQ------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 487 aI~~il~------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
.|..++. +.-++|.++.|+|||..++..+..... .+.+|+||...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-------~gg~VlyId~E 98 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-------MGGVAAFIDAE 98 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEESS
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEecc
Confidence 3455555 356788899999999876554444332 34467777654
No 258
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.73 E-value=3.6 Score=48.43 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.5
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
-+.+|+.+|.|+|||+.+-.
T Consensus 243 prGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHH
Confidence 37899999999999976433
No 259
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.72 E-value=6.5 Score=46.93 Aligned_cols=60 Identities=10% Similarity=0.159 Sum_probs=52.0
Q ss_pred hcCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc
Q 047890 700 ERGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759 (1134)
Q Consensus 700 ~~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd 759 (1134)
.....+||+++++..+....+.|.+ ++.+..++++.+..++..++..+..+..+|||+|.
T Consensus 63 ~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 63 LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp HSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred HhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3457899999999999988887754 67788999999999999999999999999999993
No 260
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=83.62 E-value=5.2 Score=40.11 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=53.2
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH---Hhhc-CCCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL---RELD-QGADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l---~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
..++||+|+++..++.+++.|.+. ++.+..++++....... ..+. ....|+|+|. +....+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhhC
Confidence 458999999999999999999875 46788888887654332 2333 3478999992 22345677788
Q ss_pred EEEEEcch
Q 047890 605 SLLVLDEA 612 (1134)
Q Consensus 605 ~lVVIDEA 612 (1134)
++||.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 88886443
No 261
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=83.44 E-value=0.83 Score=53.43 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=30.7
Q ss_pred CCCCCCcccccCCCCcceEeecCCcCceeeccCCC
Q 047890 20 PTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAA 54 (1134)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1134)
..||..|+.-.| .+|.+||-|-.|..|+|+.|-.
T Consensus 7 ~~lP~gWe~~~~-~~g~~y~i~h~~~~t~w~~Pr~ 40 (429)
T 3olm_A 7 GPLPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRL 40 (429)
T ss_dssp CCCCTTCCCCCS-SCCCCCEEETTTTEEESSCTTS
T ss_pred CCCCCCceeEEC-CCCCeEEEeCCCcceeccCCCC
Confidence 349999999988 5999999999999999999964
No 262
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=83.30 E-value=3.2 Score=49.65 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=20.7
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLR 520 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~ 520 (1134)
++.++||.+.||||||.+.-..++.++.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999875444444443
No 263
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.21 E-value=3.1 Score=44.26 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
.+.+++.+++|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3569999999999997643
No 264
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.95 E-value=2 Score=47.78 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=36.7
Q ss_pred HHHHHHHcC-----CCEEEEccCCCchhHHHHHHHHHHHHHh-----cCCCCCC----CEEEEEcccHHH-HHHHHHHHH
Q 047890 486 QTWPIALQG-----RDIVAIAKTGSGKTLGYLIPAFILLRQL-----HNNPRNG----PTVLVLAPTREL-ATQIQDEAN 550 (1134)
Q Consensus 486 eaI~~il~g-----rdvLl~ApTGSGKTla~llpal~~L~~~-----~~~~~~g----~kvLVLvPTreL-a~Q~~~el~ 550 (1134)
..|..++.+ .-++|.+++|+|||..++..+....... ......+ .+++||.-...+ ..++.+.++
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 345666643 4578899999999987665544321100 0000112 578888754332 455555555
Q ss_pred Hh
Q 047890 551 KF 552 (1134)
Q Consensus 551 kl 552 (1134)
++
T Consensus 165 ~~ 166 (322)
T 2i1q_A 165 HA 166 (322)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 265
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=82.60 E-value=3 Score=41.80 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=53.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH---hhc-CCCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR---ELD-QGADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~---~l~-~~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
...++||+|+++..+..+.+.|.+. ++.+..++|+........ .+. ....|+|+| + +-...+++..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~-~~~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----N-VCARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----C-SCCTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----c-chhcCCCccc
Confidence 3458999999999999999888875 567888888876544332 333 347899999 2 2245667888
Q ss_pred eEEEEEcc
Q 047890 604 VSLLVLDE 611 (1134)
Q Consensus 604 l~lVVIDE 611 (1134)
+++||.-+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99888533
No 266
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=82.56 E-value=4.8 Score=47.98 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=23.6
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
.+++++.+|+|||.++...+..+.+ .+.++++|..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~-------~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR-------KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEec
Confidence 3677899999999887665544432 2445666654
No 267
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=82.48 E-value=0.99 Score=51.49 Aligned_cols=45 Identities=29% Similarity=0.247 Sum_probs=30.9
Q ss_pred HHHHHHc------CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 487 TWPIALQ------GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 487 aI~~il~------grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
.|..++. +.-++|.++.|+|||..++..+..... .+.+|+||.-.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~-------~g~~vlyid~E 100 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAE 100 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEeCC
Confidence 3555554 356888999999999887766655544 24467777753
No 268
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=82.47 E-value=4.2 Score=40.32 Aligned_cols=74 Identities=20% Similarity=0.368 Sum_probs=52.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH---Hhhc-CCCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL---RELD-QGADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l---~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
..++||+|++++.++.+.+.|.+. ++.+..++++....... ..+. ....|+|+| + .....+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~-~~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----D-LLARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----G-GGTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----C-hhhcCCCcccC
Confidence 458999999999999999988875 46788888887654332 2333 347899999 2 22445677788
Q ss_pred EEEEEcch
Q 047890 605 SLLVLDEA 612 (1134)
Q Consensus 605 ~lVVIDEA 612 (1134)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88877443
No 269
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.15 E-value=1.5 Score=49.28 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=52.8
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHh
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE 575 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~ 575 (1134)
-++|.++.|+|||..++-.+...++. ..+.+||||....++... .+++++.+ +.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-----g~g~~vlyId~E~s~~~~---ra~~lGvd--~d---------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-----YPDAVCLFYDSEFGITPA---YLRSMGVD--PE---------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-----CTTCEEEEEESSCCCCHH---HHHHTTCC--GG----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-----CCCceEEEEeccchhhHH---HHHHhCCC--HH----------------
Confidence 47888999999998877666655542 124588998875444322 35555422 11
Q ss_pred hcCCCcEEEeChHHHHH----HHHh-cccCCCCeEEEEEcchhhhh
Q 047890 576 LDQGADIVVATPGRLND----ILEM-KKIDFGQVSLLVLDEADRML 616 (1134)
Q Consensus 576 l~~~~dIIVaTPerL~~----lL~~-~~l~l~~l~lVVIDEAHrll 616 (1134)
++++..+..+.. ++.. ..+.-..+++||||-+..|.
T Consensus 84 -----~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 -----RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 234444333322 2211 11334578999999988765
No 270
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=81.93 E-value=7.3 Score=48.53 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=16.5
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
..++|+.+++|+|||.++-.
T Consensus 207 ~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHH
Confidence 46799999999999976543
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.74 E-value=5.3 Score=44.45 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=16.2
Q ss_pred EEEEccCCCchhHHHHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFI 517 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~ 517 (1134)
+++++++|+|||.++...+..
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHH
Confidence 667899999999876655443
No 272
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=81.73 E-value=5 Score=41.39 Aligned_cols=21 Identities=24% Similarity=0.052 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ll 513 (1134)
.+.-+.|.+++|+|||..+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345688899999999976543
No 273
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=81.46 E-value=4.6 Score=49.06 Aligned_cols=59 Identities=12% Similarity=0.307 Sum_probs=51.0
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHH--hcCCCCeeeecc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQF--RSGKSPILVATD 759 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~F--rsGe~~VLVATd 759 (1134)
....+||+++++..++...+.|.+ ++.+..++++++..++..++..+ ..+..+|||+|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 457999999999999888887754 67889999999999999888888 578899999995
No 274
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=80.93 E-value=5 Score=48.83 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=19.3
Q ss_pred HHHHcCCCEEEEccCCCchhHHHH
Q 047890 489 PIALQGRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 489 ~~il~grdvLl~ApTGSGKTla~l 512 (1134)
..+..+..+++.+|+|+|||..+-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 345567899999999999997643
No 275
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=80.91 E-value=5.2 Score=41.63 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=52.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH---hhc-CCCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR---ELD-QGADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~---~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
..++||.|+++.-++.+.+.|.+. ++.+..++|+........ .+. ....|+|+| + +-...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~-~~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----D-VAARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----T-TTTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----C-hhhcCCCCccC
Confidence 458999999999999999988876 467888999876544333 333 347899999 2 23456777888
Q ss_pred EEEEE
Q 047890 605 SLLVL 609 (1134)
Q Consensus 605 ~lVVI 609 (1134)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88875
No 276
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=80.56 E-value=4.7 Score=47.72 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~l 512 (1134)
+.+||.+|+|+|||+.+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999997643
No 277
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.36 E-value=6 Score=49.39 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.2
Q ss_pred CEEEEccCCCchhHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~ll 513 (1134)
.+|+.+|||+|||.++-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 499999999999987543
No 278
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=79.91 E-value=8.5 Score=45.82 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=57.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH---hhc-CCCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR---ELD-QGADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~---~l~-~~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
.+.++||+|+|+.-++.+++.|.+... .++.+..++++........ .+. ....||||| + +-...+++.+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~-~~~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----D-VGARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----G-GGTSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----c-hhhcCCCccc
Confidence 456999999999999999999987643 2577888888876544332 232 457899999 2 3345678888
Q ss_pred eEEEEEcch
Q 047890 604 VSLLVLDEA 612 (1134)
Q Consensus 604 l~lVVIDEA 612 (1134)
+++||.-..
T Consensus 411 v~~VI~~~~ 419 (563)
T 3i5x_A 411 VHEVLQIGV 419 (563)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEECC
Confidence 988886543
No 279
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.89 E-value=2.3 Score=51.19 Aligned_cols=19 Identities=26% Similarity=0.174 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
+..+++.+|+|+|||..+-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999997643
No 280
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.47 E-value=8.6 Score=43.18 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=35.9
Q ss_pred CeEEEEEcchhhhh-ccCchHHHHHHHHhCCCCceEEEEeccCchhHHHHHHhhc
Q 047890 603 QVSLLVLDEADRML-DMGFEPQIRKIVNEMPPHRQTLMYTATWPKDVRKIASDLL 656 (1134)
Q Consensus 603 ~l~lVVIDEAHrll-~~gf~~~i~~IL~~l~~~~qiLllSATl~~~v~~l~~~~l 656 (1134)
..+++++|.+-++. ...+...+..+...+.++..++.+.++...++.+.++.+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 45678899887643 2234555666666666677788899987777666666553
No 281
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.37 E-value=2.3 Score=50.55 Aligned_cols=49 Identities=14% Similarity=0.035 Sum_probs=30.7
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEA 549 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el 549 (1134)
+.-+||.+++|+|||..++-.+...+.. .+.+|+|++-- +-..++...+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh------cCCcEEEEecc-CCHHHHHHHH
Confidence 4568889999999998766555544321 24578887753 2234444443
No 282
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=78.54 E-value=2.7 Score=42.90 Aligned_cols=73 Identities=21% Similarity=0.300 Sum_probs=45.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCch---hHHhhc-CCCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGP---QLRELD-QGADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~---~l~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
...++||+|+++..++.+.+.|+.. ++.+..++|+..... .+..+. ....|||+| +.+ ...+++..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~-~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVA-ARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chh-hcCCCccc
Confidence 3568999999999999999988875 467888888764432 333333 357899999 222 34556777
Q ss_pred eEEEEEc
Q 047890 604 VSLLVLD 610 (1134)
Q Consensus 604 l~lVVID 610 (1134)
+++||.=
T Consensus 115 ~~~VI~~ 121 (185)
T 2jgn_A 115 VKHVINF 121 (185)
T ss_dssp BSEEEES
T ss_pred CCEEEEe
Confidence 8877763
No 283
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=78.41 E-value=5.6 Score=40.98 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=49.8
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC------CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cc-----eeccccCc
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR------NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VA-----ARGLDIKD 769 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~------~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl-----~~GLDIp~ 769 (1134)
..++||.|+++..++.+++.+.+ ++.+..++|+....+..+ .+.++..+|+|+|. .+ ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 34899999999998888776532 567888999988665543 34556789999993 22 22355667
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 284
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.32 E-value=12 Score=39.43 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHHH
Q 047890 495 RDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ 511 (1134)
+.+++.+++|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999754
No 285
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=78.30 E-value=7.5 Score=43.93 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=53.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH---hhc-CCCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR---ELD-QGADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~---~l~-~~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
...++||+|++++.++.+++.|++. ++.+..++++....+... .+. ....|||+| +.+ ...+++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVA-ARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHH-HTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chh-hcCCCccc
Confidence 4568999999999999999998875 467888888876543332 232 357899999 333 45678888
Q ss_pred eEEEEE
Q 047890 604 VSLLVL 609 (1134)
Q Consensus 604 l~lVVI 609 (1134)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998886
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.24 E-value=2.9 Score=52.63 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHH
Q 047890 495 RDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ 511 (1134)
+.+|+.+|.|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999763
No 287
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.09 E-value=3.7 Score=56.36 Aligned_cols=51 Identities=27% Similarity=0.245 Sum_probs=35.8
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
.++.+|+.+++|+|||..++..+...++ .+.+++|+.-. ++.++++ ..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k-------~Ge~~~Fit~e-e~~~~L~--a~~~G 1130 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAE-HALDPIY--ARKLG 1130 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEECTT-SCCCHHH--HHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEEcc-ccHHHHH--HHHcC
Confidence 3478999999999999887666655544 46678888753 5556665 34443
No 288
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=77.51 E-value=11 Score=45.30 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=57.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH---hhc-CCCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR---ELD-QGADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~---~l~-~~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
...++||+|+|+..++.+++.|++... .++.+..++++........ .+. ....||||| + +-...+++.+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~-~~~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----D-VGARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----G-GGTSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----c-hhhcCCCccc
Confidence 456999999999999999999988643 2577888888876544332 232 357899999 2 3345678888
Q ss_pred eEEEEEcchh
Q 047890 604 VSLLVLDEAD 613 (1134)
Q Consensus 604 l~lVVIDEAH 613 (1134)
+++||.-..-
T Consensus 360 v~~VI~~~~p 369 (579)
T 3sqw_A 360 VHEVLQIGVP 369 (579)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEcCCC
Confidence 9988865543
No 289
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=77.33 E-value=11 Score=39.74 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=50.9
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----cce-eccccCc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAA-RGLDIKD 769 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~-~GLDIp~ 769 (1134)
.+.++||.|++++.++.+++.+.+ ++.+..++|+.+..+....+.. ..+|||+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999999988777643 5678889999887765554433 578999993 222 2346777
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777663
No 290
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=77.07 E-value=2.5 Score=47.74 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHcC-----CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHH-HHHHHHHHHHh
Q 047890 487 TWPIALQG-----RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTREL-ATQIQDEANKF 552 (1134)
Q Consensus 487 aI~~il~g-----rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreL-a~Q~~~el~kl 552 (1134)
.|..++.+ .-++|.+++|+|||..++..+...+.. ......+.+++||.-...+ ..++.+.+.++
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~-~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP-GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSC-BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc-cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 46666643 457889999999998765544432110 0000134578888754321 34444445544
No 291
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=76.64 E-value=1.7 Score=50.92 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=23.5
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
.+++++++|+|||..+...+..+.. .+.+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~-------~G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQK-------RGLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHH-------HHCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEe
Confidence 5778899999999887665554443 234566665
No 292
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=76.51 E-value=13 Score=34.54 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=38.8
Q ss_pred EEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCe
Q 047890 705 VIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPI 754 (1134)
Q Consensus 705 vLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~V 754 (1134)
.+||...-+.+..+.+.+++ +..+++|.++...+.|.+-++.|..--++|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 46777888888888777754 678888899988888888888887755444
No 293
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.59 E-value=2.4 Score=57.39 Aligned_cols=90 Identities=22% Similarity=0.265 Sum_probs=55.9
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR 574 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~ 574 (1134)
+-+.|.+|.|||||..++-.+....+ .+..++||.+-.+|...+ +++++.+. .
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~~Gv~~--~--------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALDPIY---ARKLGVDI--D--------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEECTTSCCCHHH---HHHTTCCG--G---------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh-------cCCeEEEEecCCCCCHHH---HHHcCCCH--H---------------
Confidence 34788899999999886655444433 466888888865665443 66665331 1
Q ss_pred hhcCCCcEEEeChHHHHHHHHh--cccCCCCeEEEEEcchhhhhc
Q 047890 575 ELDQGADIVVATPGRLNDILEM--KKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 575 ~l~~~~dIIVaTPerL~~lL~~--~~l~l~~l~lVVIDEAHrll~ 617 (1134)
+++|+-|+.-...|.. ..+.-..+++||||.+-.+..
T Consensus 1485 ------~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ------HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 2566666543333221 112234578999999987654
No 294
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=75.55 E-value=9.1 Score=42.30 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=16.5
Q ss_pred EEEEccCCCchhHHHHHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~ 518 (1134)
+++.++.|+|||..+...+..+
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5667999999998766555443
No 295
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=75.32 E-value=7.1 Score=41.55 Aligned_cols=70 Identities=16% Similarity=0.299 Sum_probs=49.2
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----cce--eccccCc
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAA--RGLDIKD 769 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~--~GLDIp~ 769 (1134)
..++||.++++..+..+++.+.+ ++.+..++|+....+....+ ....+|+|+|. .+. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999999888876643 56788899988765544332 24689999993 222 3466777
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 777664
No 296
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.18 E-value=25 Score=43.17 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=58.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHh---hc-CCCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE---LD-QGADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~---l~-~~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
.+.++||+|+|+..++.+.+.|.+. ++.+.+++++......... +. ...+|+|+|. +-...+++.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCC
Confidence 3569999999999999999998886 4677788877654433322 33 3478999992 2355678889
Q ss_pred eEEEEEcchhhh
Q 047890 604 VSLLVLDEADRM 615 (1134)
Q Consensus 604 l~lVVIDEAHrl 615 (1134)
+++||+-|++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999998753
No 297
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=74.09 E-value=4.8 Score=52.92 Aligned_cols=89 Identities=19% Similarity=0.105 Sum_probs=51.8
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhh
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLREL 576 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l 576 (1134)
-||.|..|||||.+++--+..++... ....++|+|||.. +.-++.+.+.+.... .
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~----~~~~~il~lVP~q-~TFt~~~rl~~~l~~---~----------------- 58 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA----PFGKPIIFLVPDQ-MTFLMEYELAKTPDM---G----------------- 58 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC----TTSSCEEEECCGG-GHHHHHHHHTCCSSC---S-----------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC----CCCCcEEEEecCc-ccHHHHHHHHHhhhh---c-----------------
Confidence 37889999999998776666655541 2346899999974 333333333322110 0
Q ss_pred cCCCcEEEeChHHHHHHHHhcccCCCCeEEEEEcchhh
Q 047890 577 DQGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 577 ~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVIDEAHr 614 (1134)
....|-|.|..+|...+-...- .....|+|+.+.
T Consensus 59 -~~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~~ 92 (1166)
T 3u4q_B 59 -GMIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTGV 92 (1166)
T ss_dssp -EESSEEEECHHHHHHHHHHHHS---CTTSCEECHHHH
T ss_pred -ceeeeEEecHHHHHHHHHHHcC---CCcccCcCHHHH
Confidence 0135889999888654432211 122456777664
No 298
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=74.03 E-value=4 Score=51.36 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~l 512 (1134)
+.+|+.+|.|+|||+.+-
T Consensus 512 ~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp SCCEEESSTTSSHHHHHH
T ss_pred ceEEEecCCCCCchHHHH
Confidence 679999999999997643
No 299
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=74.02 E-value=8.4 Score=40.17 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=46.5
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cc----ee--ccccC
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VA----AR--GLDIK 768 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl----~~--GLDIp 768 (1134)
.+.++||.|+++..+..+++.+.+ .+.+..++|+....+....+ ...+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 467899999999999888877643 36788889987765543332 4689999993 22 22 25556
Q ss_pred cceEEEe
Q 047890 769 DIRVVIN 775 (1134)
Q Consensus 769 ~v~~VI~ 775 (1134)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6666653
No 300
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=73.80 E-value=5.9 Score=44.80 Aligned_cols=30 Identities=27% Similarity=0.121 Sum_probs=21.4
Q ss_pred HHHHHHcC-----CCEEEEccCCCchhHHHHHHHH
Q 047890 487 TWPIALQG-----RDIVAIAKTGSGKTLGYLIPAF 516 (1134)
Q Consensus 487 aI~~il~g-----rdvLl~ApTGSGKTla~llpal 516 (1134)
.+..++.+ .-+.|.++.|+|||..+...+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46666643 4578899999999987655443
No 301
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.56 E-value=3.2 Score=48.07 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=29.0
Q ss_pred HHHHHHc-----CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 487 TWPIALQ-----GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 487 aI~~il~-----grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
.|..++. +.-++|.++.|+|||..+...++..+... .....+.++|||.-.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~-~~Gg~~~~viyid~E 221 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPL-DIGGGEGKCLYIDTE 221 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTCCSSEEEEEESS
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCc-ccCCCCCcEEEEeCC
Confidence 3555553 35688899999999987654433322110 000124568887643
No 302
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.28 E-value=4 Score=55.25 Aligned_cols=38 Identities=26% Similarity=0.209 Sum_probs=29.9
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEccc
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPT 538 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPT 538 (1134)
+..++|.+++|+|||..++..++..+. .+.+++||.-.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~-------~G~~vlYI~te 71 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAE 71 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh-------CCCceEEEEec
Confidence 578999999999999988777666655 35578888764
No 303
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=73.02 E-value=14 Score=42.98 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=15.9
Q ss_pred EEEEccCCCchhHHHHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFI 517 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~ 517 (1134)
++++++.|+|||.++...+..
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 566799999999876655443
No 304
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=72.85 E-value=4.7 Score=47.01 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=46.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEE
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLL 607 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lV 607 (1134)
+.++||+|++++-++.+++.|++. ++.+..++|. .....+..+.. ..+||||| +.+ ...+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT-----~v~-e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILAT-----DIA-EMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEES-----SST-TCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEEC-----Chh-heeeccC-ceEE
Confidence 458999999999999999999886 4678888884 34444455544 47999999 333 4456777 8877
Q ss_pred E
Q 047890 608 V 608 (1134)
Q Consensus 608 V 608 (1134)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 305
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=72.37 E-value=47 Score=40.78 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=57.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH---hhcC-CCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR---ELDQ-GADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~---~l~~-~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
.+.++||+|+|+..++.+.+.|.+. ++.+..++++........ .+.. ..+|+||| +.+ ...+++.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCC
Confidence 3569999999999999999988886 467777887765443332 2333 47899999 222 45678889
Q ss_pred eEEEEEcchhh
Q 047890 604 VSLLVLDEADR 614 (1134)
Q Consensus 604 l~lVVIDEAHr 614 (1134)
+++||+=|++.
T Consensus 508 v~lVI~~d~d~ 518 (664)
T 1c4o_A 508 VSLVAILDADK 518 (664)
T ss_dssp EEEEEETTTTS
T ss_pred CCEEEEeCCcc
Confidence 99999988765
No 306
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=72.18 E-value=14 Score=43.00 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=23.7
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
.+++++..|+|||.++.-.+..+... .+.+|+++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~------~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK------HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT------SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh------cCCeEEEEe
Confidence 46667999999999877666555431 145666655
No 307
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=71.95 E-value=28 Score=36.59 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=47.7
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cc----e-eccccCcc
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VA----A-RGLDIKDI 770 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl----~-~GLDIp~v 770 (1134)
+.++||.|++++.+..+++.+.+ .+.+..++++....+....+ ....+|+|+|. .+ . ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 35899999999999888777632 45678888887765443322 34689999993 22 1 23566677
Q ss_pred eEEEe
Q 047890 771 RVVIN 775 (1134)
Q Consensus 771 ~~VI~ 775 (1134)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77664
No 308
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=71.71 E-value=2.2 Score=41.50 Aligned_cols=37 Identities=38% Similarity=0.624 Sum_probs=27.3
Q ss_pred cccCCCCCcC--------CCCCCCCCCcccccC----C---CCcceEeecCC
Q 047890 7 TTASLGPRYA--------PDDPTLPKPWKGLID----G---STGLLYYWNPE 43 (1134)
Q Consensus 7 ~~~~~~~~~~--------~~~~~~~~~~~~~~~----~---~~~~~~~~~~~ 43 (1134)
+++|.++|++ .+|+.||..|+..+- + ...-+||++|+
T Consensus 15 ~~~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP~ 66 (133)
T 1ub1_A 15 ASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQ 66 (133)
T ss_dssp CCSCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECTT
T ss_pred cccCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECCC
Confidence 4578888886 679999999976543 2 22358999994
No 309
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=71.27 E-value=6.8 Score=41.15 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=42.3
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----ccee-ccccCc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAAR-GLDIKD 769 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~~-GLDIp~ 769 (1134)
.+.++||.++++..+..+++.+.+ .+.+..++++....+ .++.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 356899999999999888887743 355677777765433 33455667789999992 3333 355666
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 776664
No 310
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=71.08 E-value=18 Score=39.99 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=53.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHh---hc-CCCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRE---LD-QGADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~---l~-~~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
..++||.|++++-++.+.+.|.+. ++.+..++|+......... +. ...+|+|+| + +-...+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~-va~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----D-VAARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----S-TTTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----c-hhhcCccccce
Confidence 458999999999999888888764 5778899998776544333 32 347899999 3 33456778888
Q ss_pred EEEEEcc
Q 047890 605 SLLVLDE 611 (1134)
Q Consensus 605 ~lVVIDE 611 (1134)
++||.=+
T Consensus 98 ~~VI~~d 104 (300)
T 3i32_A 98 DLVVHYR 104 (300)
T ss_dssp SEEEESS
T ss_pred eEEEEcC
Confidence 8888533
No 311
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=71.00 E-value=12 Score=44.47 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~l 512 (1134)
+.++|.+|+|+|||+.+-
T Consensus 65 ~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp SEEEEECSSSSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 459999999999997643
No 312
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=70.92 E-value=12 Score=37.75 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=48.9
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC---CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----cce-eccccCcce
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR---NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAA-RGLDIKDIR 771 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~---~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~-~GLDIp~v~ 771 (1134)
.+.++||.|+++..++.+++.+.+ .+.+..++++....+....+. ...+|+|+|. .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 356899999999999888887743 467888898877655443332 2578999994 222 235566677
Q ss_pred EEEe
Q 047890 772 VVIN 775 (1134)
Q Consensus 772 ~VI~ 775 (1134)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 313
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=70.88 E-value=9.6 Score=42.81 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH---hhc-CCCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR---ELD-QGADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~---~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
..++||+|+++..+..+++.|.+. ++.+..++++....+... .+. ....|||+| + +-...+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~-~~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----N-VCARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----G-GGTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----C-ccccCCCccCC
Confidence 458999999999999999999886 467788888876544332 333 347899999 2 33556788899
Q ss_pred EEEEEcc
Q 047890 605 SLLVLDE 611 (1134)
Q Consensus 605 ~lVVIDE 611 (1134)
++||.-.
T Consensus 336 ~~Vi~~~ 342 (412)
T 3fht_A 336 SVVINFD 342 (412)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9988533
No 314
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=70.77 E-value=8.7 Score=45.67 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~ll 513 (1134)
-++|++++|+|||..+-.
T Consensus 295 VI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCcccHHHHHHH
Confidence 367789999999987544
No 315
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=70.21 E-value=6.6 Score=51.06 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=55.0
Q ss_pred HhcCCEEEEEeCcHHHHHHHHHHhcC-----CC----cEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cceeccc-c
Q 047890 699 QERGSRVIIFCSTKRLCDQLARSIGR-----NF----GAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VAARGLD-I 767 (1134)
Q Consensus 699 ~~~~~kvLVF~nT~~~ae~La~~L~~-----~~----~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl~~GLD-I 767 (1134)
...+.++||.++|+..+..+++.|.+ ++ .+..++|+.+..++.+.++.+.+ .+|||+|. .+..-+. +
T Consensus 96 ~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L 173 (1054)
T 1gku_B 96 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYREL 173 (1054)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTS
T ss_pred hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHh
Confidence 34567899999999999888877742 34 78899999999888888888777 99999994 2221111 4
Q ss_pred CcceEEEe
Q 047890 768 KDIRVVIN 775 (1134)
Q Consensus 768 p~v~~VI~ 775 (1134)
..+++||.
T Consensus 174 ~~l~~lVi 181 (1054)
T 1gku_B 174 GHFDFIFV 181 (1054)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 45666653
No 316
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=69.98 E-value=18 Score=40.74 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=15.4
Q ss_pred CEEEEccCCCchhHHHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLIPA 515 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpa 515 (1134)
.+++++..|+|||..+...+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47788999999998755443
No 317
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=69.38 E-value=19 Score=40.75 Aligned_cols=76 Identities=25% Similarity=0.336 Sum_probs=52.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecC--------CCCCchhH---Hhhc-CCCcEEEeChHHHHHHHH
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG--------GAPKGPQL---RELD-QGADIVVATPGRLNDILE 595 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~G--------G~~~~~~l---~~l~-~~~dIIVaTPerL~~lL~ 595 (1134)
.+.++||+|+++..++.+++.|++. ++.+..++| +....+.. ..+. ..+.|||+| + .-
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T-----~-~~ 429 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT-----S-VG 429 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-----G-GG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC-----C-cc
Confidence 4568999999999999999999886 567888888 54443332 2333 347899999 2 22
Q ss_pred hcccCCCCeEEEEEcchh
Q 047890 596 MKKIDFGQVSLLVLDEAD 613 (1134)
Q Consensus 596 ~~~l~l~~l~lVVIDEAH 613 (1134)
...+++..+++||+-+..
T Consensus 430 ~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 430 EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGGGSTTCCEEEESSCC
T ss_pred ccCCCchhCCEEEEeCCC
Confidence 456777888888875544
No 318
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.30 E-value=8.7 Score=48.44 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHH
Q 047890 494 GRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ 511 (1134)
++.+||.+++|+|||+.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEECSCTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999764
No 319
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=68.93 E-value=15 Score=39.32 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=48.8
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----cce--eccccC
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAA--RGLDIK 768 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~--~GLDIp 768 (1134)
.+.++||.++++..++.+++.|.+ ...+..+.|+....+.... +..+ .+|||+|. .+. ..+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 467899999999999988877743 4567778887776544333 3333 89999993 222 246677
Q ss_pred cceEEEe
Q 047890 769 DIRVVIN 775 (1134)
Q Consensus 769 ~v~~VI~ 775 (1134)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777663
No 320
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=68.78 E-value=31 Score=38.18 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh---HHhhcC-CCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ---LRELDQ-GADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~---l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
...++||+|+++.-++.+++.|++. ++.+..++++....+. +..+.. ...|||+|. +-...+++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 3468999999999999999999875 4677888888764433 233333 478999992 3345678889
Q ss_pred eEEEEEcchhh
Q 047890 604 VSLLVLDEADR 614 (1134)
Q Consensus 604 l~lVVIDEAHr 614 (1134)
+++||.-+...
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99999766543
No 321
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=68.38 E-value=8.8 Score=39.78 Aligned_cols=71 Identities=14% Similarity=0.292 Sum_probs=44.6
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cc-----eeccccCcc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VA-----ARGLDIKDI 770 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl-----~~GLDIp~v 770 (1134)
.+.++||++++++.+..+++.+.+ ++.+..++++....+....+ . ...+|||+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 467899999999999888877743 56788888887655433322 2 3588999993 11 224556667
Q ss_pred eEEEe
Q 047890 771 RVVIN 775 (1134)
Q Consensus 771 ~~VI~ 775 (1134)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 76663
No 322
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=68.20 E-value=5.9 Score=41.38 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=48.4
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC------CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cc-----eeccccCc
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR------NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VA-----ARGLDIKD 769 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~------~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl-----~~GLDIp~ 769 (1134)
+.++||.|++++.++.+++.+.+ ++.+..++|+....+....+ ...+|+|+|. .+ ...+++..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 46899999999999888877642 56788899988876654433 2588999994 22 12345666
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+++||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 666653
No 323
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=68.11 E-value=5.3 Score=46.20 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=31.6
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELAT 543 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~ 543 (1134)
...+++|.++||+|||..+...+...+. .+..+||+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~-------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLL-------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHH-------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHH-------CCCcEEEEeCCCchhH
Confidence 4578999999999999874333333333 3558888888877754
No 324
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=67.97 E-value=8.2 Score=43.13 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=55.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH---Hhhc-CCCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL---RELD-QGADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l---~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
...++||+|++++.+..+++.|.+. ++.+..++++....... ..+. ....|||+|. .-...+++..
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~ 318 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIER 318 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC------CCSSCBCCTT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC------hhhcCCCccc
Confidence 4568999999999999999999875 46788888887544332 2333 3478999992 2245677888
Q ss_pred eEEEEEcchh
Q 047890 604 VSLLVLDEAD 613 (1134)
Q Consensus 604 l~lVVIDEAH 613 (1134)
+++||+-+.-
T Consensus 319 ~~~Vi~~~~p 328 (391)
T 1xti_A 319 VNIAFNYDMP 328 (391)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9999875543
No 325
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=67.86 E-value=9.6 Score=41.91 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=53.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH---Hhhc-CCCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL---RELD-QGADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l---~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
...++||+|++++-+..+++.|++. ++.+..++++....... ..+. ....|+|+|. .+ ...+++.+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VM-SRGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----TH-HHHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCCccc
Confidence 4568999999999999999999886 46778888876544332 2233 3478999992 22 34567778
Q ss_pred eEEEEEcch
Q 047890 604 VSLLVLDEA 612 (1134)
Q Consensus 604 l~lVVIDEA 612 (1134)
+++||.-+.
T Consensus 307 ~~~Vi~~~~ 315 (367)
T 1hv8_A 307 LNCVINYHL 315 (367)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEecC
Confidence 888886543
No 326
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=67.36 E-value=13 Score=42.92 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=52.4
Q ss_pred EEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH---HhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEE
Q 047890 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL---RELDQ-GADIVVATPGRLNDILEMKKIDFGQVSL 606 (1134)
Q Consensus 531 kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l---~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~l 606 (1134)
++||+|+++.-++.+++.|.+. ++.+..++|+....+.. ..+.. ...|||||. +-...+++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 3999999999999999988875 56788899887654333 23333 478999993 3356778888998
Q ss_pred EEEc
Q 047890 607 LVLD 610 (1134)
Q Consensus 607 VVID 610 (1134)
||.-
T Consensus 372 VI~~ 375 (434)
T 2db3_A 372 VINY 375 (434)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8863
No 327
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=66.68 E-value=38 Score=37.84 Aligned_cols=74 Identities=11% Similarity=0.191 Sum_probs=53.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh---HHhhc-CCCcEEEeChHHHHHHHHhcccCCCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ---LRELD-QGADIVVATPGRLNDILEMKKIDFGQ 603 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~---l~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~ 603 (1134)
...++||+|++++.++.+++.|++. ++.+..++++...... +..+. ....|||+|. +-...+++..
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~ 326 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQA 326 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccC
Confidence 3458999999999999999999886 4667888887765433 22333 3478999992 2345677888
Q ss_pred eEEEEEcc
Q 047890 604 VSLLVLDE 611 (1134)
Q Consensus 604 l~lVVIDE 611 (1134)
+++||.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99888644
No 328
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=65.96 E-value=4 Score=46.50 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHH
Q 047890 812 YAADLVKVLEGANQHVPPEVRDMA 835 (1134)
Q Consensus 812 ~~~~l~k~L~~~~~~lp~~l~dla 835 (1134)
.+.++.+.|.......+..+..+.
T Consensus 233 ~l~~i~~~il~~y~~~~~~L~~i~ 256 (358)
T 2pk2_A 233 LLDELTHEFLQILEKTPNRLKRIW 256 (358)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccchh
Confidence 334444444444444444555544
No 329
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=65.81 E-value=1.3 Score=50.68 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHhhcCC
Q 047890 810 SKYAADLVKVLEGANQH 826 (1134)
Q Consensus 810 ~~~~~~l~k~L~~~~~~ 826 (1134)
.+....+++.++.....
T Consensus 235 ~~i~~~il~~y~~~~~~ 251 (358)
T 2pk2_A 235 DELTHEFLQILEKTPNR 251 (358)
T ss_dssp HHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHHhCccc
Confidence 34444555555444443
No 330
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=65.66 E-value=17 Score=43.33 Aligned_cols=52 Identities=23% Similarity=0.158 Sum_probs=30.7
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 047890 492 LQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~k 551 (1134)
..|.-++|.+++|+|||..+...+.. +.. .+.++++++.... ..++...+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~-~~~------~G~~vi~~~~ee~-~~~l~~~~~~ 330 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVEN-ACA------NKERAILFAYEES-RAQLLRNAYS 330 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH-HHT------TTCCEEEEESSSC-HHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH-HHh------CCCCEEEEEEeCC-HHHHHHHHHH
Confidence 35567889999999999865544332 221 2446777765422 2355444433
No 331
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=65.09 E-value=50 Score=37.03 Aligned_cols=73 Identities=14% Similarity=0.286 Sum_probs=53.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHH---hhc-CCCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLR---ELD-QGADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~---~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
..++||+|+++..++.+++.|.+. ++.+..++++....+... .+. ....|||+|. +-...+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccC
Confidence 348999999999999999988875 467888888876443322 232 3478999993 33456788899
Q ss_pred EEEEEcc
Q 047890 605 SLLVLDE 611 (1134)
Q Consensus 605 ~lVVIDE 611 (1134)
++||.-+
T Consensus 346 ~~Vi~~~ 352 (410)
T 2j0s_A 346 SLIINYD 352 (410)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9888643
No 332
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=62.41 E-value=9.8 Score=38.49 Aligned_cols=30 Identities=37% Similarity=0.378 Sum_probs=20.8
Q ss_pred EccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 500 IAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 500 ~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
...-|.|||.+++..+..+.+ .+.+|++|=
T Consensus 8 s~kgG~GKTt~a~~la~~la~-------~g~~vlliD 37 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSR-------SGYNIAVVD 37 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHH-------TTCCEEEEE
T ss_pred eCCCCccHHHHHHHHHHHHHH-------CCCeEEEEE
Confidence 367899999998877766554 344566654
No 333
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=60.47 E-value=22 Score=45.07 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.1
Q ss_pred CEEEEccCCCchhHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~ll 513 (1134)
.+|+.+|+|+|||.++-.
T Consensus 590 ~vLl~Gp~GtGKT~lA~~ 607 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKT 607 (854)
T ss_dssp EEEEBSCSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 589999999999987543
No 334
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=64.73 E-value=1.8 Score=43.33 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=47.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh---HHhhcC-CCcEEEeChHHHHHHHHhcccCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ---LRELDQ-GADIVVATPGRLNDILEMKKIDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~---l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l 604 (1134)
..++||+|+++..++.+++.|++. ++.+..++|+...... +..+.. ...|||+| +.+ ...+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~-~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVA-ARGIDIPDV 99 (170)
Confidence 458999999999999888888765 4667777877544332 223332 36799999 222 334556667
Q ss_pred EEEEEcc
Q 047890 605 SLLVLDE 611 (1134)
Q Consensus 605 ~lVVIDE 611 (1134)
++||+-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 7776543
No 335
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=60.38 E-value=18 Score=36.54 Aligned_cols=70 Identities=10% Similarity=0.200 Sum_probs=46.9
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC------CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-c----cee-ccccCc
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR------NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-V----AAR-GLDIKD 769 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~------~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-v----l~~-GLDIp~ 769 (1134)
+.++||.|+++..++.+++.+.+ .+.+..++++....+... .+ ....+|+|+|. . +.. -+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 45799999999998888776632 466888898877654322 22 35788999994 2 222 235566
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 676664
No 336
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=59.72 E-value=11 Score=46.57 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=48.7
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEE
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLL 607 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lV 607 (1134)
+.++||+|++++-++.+++.|++. ++.+..+++. .....+..+.. ..+||||| +.+ ...+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~-e~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DIS-EMGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGG-GTTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chh-hcceeeC-CcEE
Confidence 458999999999999999888875 5678888874 33344445544 47899999 333 3455666 7666
Q ss_pred E
Q 047890 608 V 608 (1134)
Q Consensus 608 V 608 (1134)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 337
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=59.71 E-value=25 Score=37.27 Aligned_cols=68 Identities=10% Similarity=0.146 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCEEEE--EeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeeccc
Q 047890 690 RRLQQILRAQERGSRVII--FCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDV 760 (1134)
Q Consensus 690 ~~L~~llk~~~~~~kvLV--F~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdv 760 (1134)
+.|..+.+......++-| |-+....++.+++.|.-++....++ +.++-+.++++.+...++++|+..+
T Consensus 94 Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~---~~ee~~~~i~~l~~~G~~vVVG~~~ 163 (225)
T 2pju_A 94 DVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYI---TEEDARGQINELKANGTEAVVGAGL 163 (225)
T ss_dssp HHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEES---SHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred HHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeC---CHHHHHHHHHHHHHCCCCEEECCHH
Confidence 344444444333344333 6777889999999998777666665 5567777888888888999888643
No 338
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=59.64 E-value=13 Score=43.75 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=44.7
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cc----eec-c-ccCc
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VA----ARG-L-DIKD 769 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl----~~G-L-DIp~ 769 (1134)
..++||+|+++..+..+++.+.+ ++.+..++|+.+..++...+. ...+|||+|. .+ ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999988888777643 678899999987655433222 1378999993 22 222 3 5666
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777664
No 339
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=58.42 E-value=10 Score=39.03 Aligned_cols=70 Identities=20% Similarity=0.266 Sum_probs=41.7
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cc-----eeccccCc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VA-----ARGLDIKD 769 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl-----~~GLDIp~ 769 (1134)
.+.++||.|+++..++.+++.+.+ ++.+..++|+....+.... +. +.+|+|+|. .+ ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356899999999999888876632 5677888888765543322 22 388999993 21 22445566
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666663
No 340
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=58.24 E-value=14 Score=43.72 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=20.5
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHHH
Q 047890 491 ALQGRDIVAIAKTGSGKTLGYLIPAFI 517 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla~llpal~ 517 (1134)
+.+++.+++.++.|+|||..+...+..
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHHHHhh
Confidence 356888999999999999765544433
No 341
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=57.88 E-value=13 Score=42.92 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=40.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhc-CCCcEEEeC
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELD-QGADIVVAT 586 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~-~~~dIIVaT 586 (1134)
..++||+|++++-++.+++.|++. ++.+..++++. ....+..+. ...+|||||
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC
Confidence 347999999999999999999886 46788888763 333334443 357999999
No 342
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=57.84 E-value=36 Score=42.66 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=53.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhc-------cCCCCceEEecCCCCCchhHHhhc---------CCCcEEEeChHHHHH
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFG-------RSSRLSCTCLYGGAPKGPQLRELD---------QGADIVVATPGRLND 592 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~-------~~~~i~v~~l~GG~~~~~~l~~l~---------~~~dIIVaTPerL~~ 592 (1134)
...+||+|+++.-++.+++.|.+.. ...++.+..++++....+....+. ....||||| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 5589999999999999988887521 224678889999876655444332 236899999 3
Q ss_pred HHHhcccCCCCeEEEEE
Q 047890 593 ILEMKKIDFGQVSLLVL 609 (1134)
Q Consensus 593 lL~~~~l~l~~l~lVVI 609 (1134)
.+ ...+++..+.+||-
T Consensus 378 ia-e~GidIp~v~~VId 393 (773)
T 2xau_A 378 IA-ETSLTIDGIVYVVD 393 (773)
T ss_dssp HH-HHTCCCTTEEEEEE
T ss_pred HH-HhCcCcCCeEEEEe
Confidence 33 34567788887774
No 343
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=57.31 E-value=6.7 Score=46.10 Aligned_cols=21 Identities=29% Similarity=0.117 Sum_probs=17.1
Q ss_pred CCCEEEEccCCCchhHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llp 514 (1134)
..++|+.+++|+|||.++-..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHH
Confidence 367999999999999875543
No 344
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=56.57 E-value=15 Score=45.31 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=48.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEE
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLL 607 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lV 607 (1134)
...++||+|++++-++.+++.|++. ++.+..++++....+. ...+.+|||+| +.+. ..++++ +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVae-rGIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALM-TGYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHH-HHCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHH-ccCCCC-CcEE
Confidence 3568999999999999999988875 5778899998765432 23456999999 3333 344554 7776
Q ss_pred E
Q 047890 608 V 608 (1134)
Q Consensus 608 V 608 (1134)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 345
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=55.89 E-value=15 Score=42.66 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=47.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEE
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLL 607 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lV 607 (1134)
..++||+|+++.-++.+++.|++. ++.+..+++... ...+..+.. ...||||| +.+ ...+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT-----~v~-~~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DIS-EMGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEEC-----GGG-GSSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEEC-----CHH-HhCcCCCC-CEE
Confidence 347999999999999999988875 467777777644 334444443 47999999 333 44566666 655
Q ss_pred E
Q 047890 608 V 608 (1134)
Q Consensus 608 V 608 (1134)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 346
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=55.71 E-value=5.5 Score=36.82 Aligned_cols=31 Identities=45% Similarity=0.901 Sum_probs=21.9
Q ss_pred CCCcCCCCCCCCCCcccccC----CC---CcceEeecCCc
Q 047890 12 GPRYAPDDPTLPKPWKGLID----GS---TGLLYYWNPET 44 (1134)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~ 44 (1134)
+|+| +||.||..|+..+- ++ ..-+||++|+-
T Consensus 16 ~~~~--~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP~G 53 (97)
T 3c2i_A 16 GPMY--DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQG 53 (97)
T ss_dssp CCCC--CCTTSCTTCEEEEEECCSSTTTTCEEEEEECTTS
T ss_pred Cccc--CCCCCCCCCEEEEEEecCCCCCCcceEEEECCCC
Confidence 5556 78999999976532 22 34699999953
No 347
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=55.61 E-value=20 Score=39.31 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=44.8
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC------CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----cce--eccccC
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR------NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAA--RGLDIK 768 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~------~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~--~GLDIp 768 (1134)
..++||+|+|++.|..+++.+.. .+.+..+.++....... ....+|||+|. .+. ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999999887666532 35667777765533211 35678999994 221 356777
Q ss_pred cceEEEe
Q 047890 769 DIRVVIN 775 (1134)
Q Consensus 769 ~v~~VI~ 775 (1134)
.+.+||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888774
No 348
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=55.57 E-value=2.8 Score=52.23 Aligned_cols=10 Identities=40% Similarity=0.627 Sum_probs=4.6
Q ss_pred eEEEEEcchh
Q 047890 604 VSLLVLDEAD 613 (1134)
Q Consensus 604 l~lVVIDEAH 613 (1134)
.|+|.|=|++
T Consensus 439 pDIIcLQEV~ 448 (727)
T 4b8c_D 439 SDLLCLQEVE 448 (727)
T ss_dssp CSSEEEC-CC
T ss_pred CCeEEEEecC
Confidence 3455555554
No 349
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=54.98 E-value=88 Score=31.63 Aligned_cols=126 Identities=12% Similarity=-0.015 Sum_probs=49.9
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHh------cCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCC
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQL------HNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGG 566 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~------~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG 566 (1134)
.+-.+-+....|-|=|+.+.+|+....... ......+.+||||-....+...+...|++++.. .+
T Consensus 19 hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~---~v------ 89 (206)
T 3mm4_A 19 HMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVS---EV------ 89 (206)
T ss_dssp ------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCS---EE------
T ss_pred cCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ee------
Confidence 344566677888899988888864321110 111124568888888877777777777665210 12
Q ss_pred CCCchhHHhhcCCCcEEEeChHHHHHHHHhc--------ccCCCCeEEEEEcchhhhhccCchHHHHHHHHh---CCCCc
Q 047890 567 APKGPQLRELDQGADIVVATPGRLNDILEMK--------KIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE---MPPHR 635 (1134)
Q Consensus 567 ~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~--------~l~l~~l~lVVIDEAHrll~~gf~~~i~~IL~~---l~~~~ 635 (1134)
+.+.+....++++... ......+++||+|=. |.+..-...+..+... .....
T Consensus 90 ---------------~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~el~~~lr~~~~~~~~~~ 152 (206)
T 3mm4_A 90 ---------------EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYEATREIRKVEKSYGVRT 152 (206)
T ss_dssp ---------------EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHHHHHHHHHHHHTTTCCC
T ss_pred ---------------eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHHHHHHHHhhhhhcCCCC
Confidence 1222333444444332 122235789999932 2333222333333322 24567
Q ss_pred eEEEEeccC
Q 047890 636 QTLMYTATW 644 (1134)
Q Consensus 636 qiLllSATl 644 (1134)
.+|++|+..
T Consensus 153 piI~ls~~~ 161 (206)
T 3mm4_A 153 PIIAVSGHD 161 (206)
T ss_dssp CEEEEESSC
T ss_pred cEEEEECCC
Confidence 799999975
No 350
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=54.39 E-value=16 Score=42.65 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=46.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcC-CCcEEEeChHHHHHHHHhcccCCCCeEEE
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQ-GADIVVATPGRLNDILEMKKIDFGQVSLL 607 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~-~~dIIVaTPerL~~lL~~~~l~l~~l~lV 607 (1134)
..++||+|+++.-++.+++.|++. ++.+..+++.. ....+..+.. ..+||||| +.+ ...+++.. ++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT-----~v~-~~GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITT-----DIS-EMGANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEES-----SCC----CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEEC-----ChH-HhCeecCC-CEE
Confidence 457999999999999999999886 46777888753 3334444443 47899999 222 33455666 555
Q ss_pred E
Q 047890 608 V 608 (1134)
Q Consensus 608 V 608 (1134)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 351
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=54.37 E-value=14 Score=37.43 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=34.0
Q ss_pred CCEEEEEeCcHHHHHH-HHHHh----cCCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc
Q 047890 702 GSRVIIFCSTKRLCDQ-LARSI----GRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~-La~~L----~~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd 759 (1134)
..++||+|+++..++. +.+.+ ...+.+..++++....++...+. ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5789999999988777 44433 33577888888766544322221 1478999993
No 352
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=54.36 E-value=9.6 Score=39.28 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=44.9
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC---------CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----ccee-ccc
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR---------NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAAR-GLD 766 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~---------~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~~-GLD 766 (1134)
+.++||.|+++..++.+++.+.+ .+.+..++|+....+.. +.+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 56899999999998888776532 45677788876543321 111 24678999993 2222 345
Q ss_pred cCcceEEEe
Q 047890 767 IKDIRVVIN 775 (1134)
Q Consensus 767 Ip~v~~VI~ 775 (1134)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 666666663
No 353
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=54.17 E-value=27 Score=40.80 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=46.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecC--------CCCC---chhHHhhcC--CCcEEEeChHHHHHHHH
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYG--------GAPK---GPQLRELDQ--GADIVVATPGRLNDILE 595 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~G--------G~~~---~~~l~~l~~--~~dIIVaTPerL~~lL~ 595 (1134)
..++||.|+++..++.+.+.|.+......+.+..++| +... ...+..+.. ...||||| + +-
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT-----~-~~ 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIAT-----S-VA 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEEC-----C-CT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEc-----c-hh
Confidence 4689999999999999999999875444455555554 3222 223344544 47899999 2 22
Q ss_pred hcccCCCCeEEEEEc
Q 047890 596 MKKIDFGQVSLLVLD 610 (1134)
Q Consensus 596 ~~~l~l~~l~lVVID 610 (1134)
...+++..+++||+=
T Consensus 463 ~~GlDlp~v~~VI~~ 477 (555)
T 3tbk_A 463 DEGIDIAECNLVILY 477 (555)
T ss_dssp TCCEETTSCSEEEEE
T ss_pred hcCCccccCCEEEEe
Confidence 455677788887763
No 354
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=54.08 E-value=55 Score=36.49 Aligned_cols=109 Identities=10% Similarity=0.068 Sum_probs=49.9
Q ss_pred HHHHHcCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCC
Q 047890 488 WPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGA 567 (1134)
Q Consensus 488 I~~il~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~ 567 (1134)
|-.++...+.|+. ++| |.+. ..++..+. ..+..+|+..|+-.-... .+..+....++.+..+.-.
T Consensus 61 la~~~~~~~~i~~---~sG-t~a~-~~~~~~~~------~~g~~vl~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~- 125 (386)
T 1cs1_A 61 LAELEGGAGAVLT---NTG-MSAI-HLVTTVFL------KPGDLLVAPHDCYGGSYR---LFDSLAKRGCYRVLFVDQG- 125 (386)
T ss_dssp HHHHHTCSEEEEE---SSH-HHHH-HHHHHHHC------CTTCEEEEETTCCHHHHH---HHHHHHTTTSCEEEEECTT-
T ss_pred HHHHhCCCcEEEe---CCH-HHHH-HHHHHHHh------CCCCEEEEecCCcHhHHH---HHHHHHHhcCCEEEEeCCC-
Confidence 3334444455554 567 6543 33333331 145678888886432222 2222222334444443221
Q ss_pred CCchhHHhhcCCCcEE-EeCh----------HHHHHHHHhcccCCCCeEEEEEcchhhhhc
Q 047890 568 PKGPQLRELDQGADIV-VATP----------GRLNDILEMKKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 568 ~~~~~l~~l~~~~dII-VaTP----------erL~~lL~~~~l~l~~l~lVVIDEAHrll~ 617 (1134)
+.+.....+...+.+| ++++ ..|.++.++..+ +||+||+|....
T Consensus 126 d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~------~li~De~~~~~~ 180 (386)
T 1cs1_A 126 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGA------VSVVDNTFLSPA 180 (386)
T ss_dssp CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTC------EEEEECTTTCTT
T ss_pred CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCC------EEEEECCCcccc
Confidence 2222223333444444 4443 233444433222 799999997543
No 355
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=53.57 E-value=18 Score=45.35 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=44.6
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cc----eec-c-ccCc
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VA----ARG-L-DIKD 769 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl----~~G-L-DIp~ 769 (1134)
+.++||+|+++..+..++..|.+ ++.+..++|+.+...+...+. ...+|||+|. .+ ..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999988887776643 678999999987655433322 2578999993 22 222 2 4556
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 677663
No 356
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=53.50 E-value=11 Score=43.01 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=28.1
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRE 540 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTre 540 (1134)
.+.+++|+++||+|||...-..+..... .+.+++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~-------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM-------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH-------CCCEEEEEeCCcC
Confidence 5678999999999999765443333321 3457788777644
No 357
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=53.22 E-value=81 Score=36.69 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=48.4
Q ss_pred EEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh---HHhhc-CCCcEEEeChHHHHHHHHhcccCCCCeEE
Q 047890 531 TVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ---LRELD-QGADIVVATPGRLNDILEMKKIDFGQVSL 606 (1134)
Q Consensus 531 kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~---l~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l~l 606 (1134)
.+||.+. .+-+..+.+.|.+.+ ..+..++|+...... +..+. ...+|||||+..+. ..+++.++++
T Consensus 350 ~~ivf~~-~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-----~GiDip~v~~ 419 (510)
T 2oca_A 350 AFVMFKH-VSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-----TGISVKNLHH 419 (510)
T ss_dssp EEEEESS-HHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-----HSCCCCSEEE
T ss_pred eEEEEec-HHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-----cccccccCcE
Confidence 4455554 566666777776643 477888887764432 22333 34789999965553 3678889999
Q ss_pred EEEcchh
Q 047890 607 LVLDEAD 613 (1134)
Q Consensus 607 VVIDEAH 613 (1134)
||+..+.
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998777
No 358
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=53.18 E-value=5.9 Score=34.92 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=19.2
Q ss_pred CCCCCCCCcccccC----C---CCcceEeecCC
Q 047890 18 DDPTLPKPWKGLID----G---STGLLYYWNPE 43 (1134)
Q Consensus 18 ~~~~~~~~~~~~~~----~---~~~~~~~~~~~ 43 (1134)
++|.||+.|+..+- + ...-+||++|.
T Consensus 7 ~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~ 39 (75)
T 1d9n_A 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPT 39 (75)
T ss_dssp ECTTTCSSCEEEECSSSSSCTTCCCCEEEECSS
T ss_pred cCCCCCCCCEEEEEEecCCCCCCceEEEEECCC
Confidence 68999999975442 2 23568999993
No 359
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=51.60 E-value=15 Score=48.22 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=40.0
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHHHhc-----CCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLRQLH-----NNPRNGPTVLVLAPTRELATQIQDEANKF 552 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~~~~-----~~~~~g~kvLVLvPTreLa~Q~~~el~kl 552 (1134)
..||.|.-|||||.+...-++.+|.... ..+-....+|+|+=|++=+.++.+.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999886655555553211 11123457999999998888888777654
No 360
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=50.64 E-value=30 Score=39.08 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=20.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 501 AKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 501 ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
+.-|.|||.+++..++.+.+. +.+||+|=
T Consensus 151 ~KGGvGKTT~a~nLA~~La~~-------g~rVlliD 179 (373)
T 3fkq_A 151 PCGGVGTSTVAAACAIAHANM-------GKKVFYLN 179 (373)
T ss_dssp SSTTSSHHHHHHHHHHHHHHH-------TCCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHhC-------CCCEEEEE
Confidence 688999999988777766542 44666664
No 361
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=50.13 E-value=7.7 Score=40.73 Aligned_cols=72 Identities=25% Similarity=0.400 Sum_probs=44.5
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----ccee---cccc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAAR---GLDI 767 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~~---GLDI 767 (1134)
.+.++||.+++++.+..+++.+.+ ++.+..++++..... ..........+|||+|. .+.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 345899999999999998887743 344555554322111 11122356778999993 2222 4677
Q ss_pred CcceEEEe
Q 047890 768 KDIRVVIN 775 (1134)
Q Consensus 768 p~v~~VI~ 775 (1134)
.++.+||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 77777664
No 362
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=49.98 E-value=2e+02 Score=30.26 Aligned_cols=22 Identities=5% Similarity=0.215 Sum_probs=15.8
Q ss_pred CEEEEEcccHHHHHHHHHHHHH
Q 047890 530 PTVLVLAPTRELATQIQDEANK 551 (1134)
Q Consensus 530 ~kvLVLvPTreLa~Q~~~el~k 551 (1134)
.++|||=....+...+...+..
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~ 26 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQ 26 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHh
Confidence 4788888887777666666654
No 363
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=49.64 E-value=17 Score=40.39 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=48.1
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cc-----eeccccCc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VA-----ARGLDIKD 769 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl-----~~GLDIp~ 769 (1134)
.+.++||+|+++..++.+++.+.+ ++.+..++|+....+....+. ..+|+|+|. .+ ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356899999999999888776632 567888999888766554443 478999993 22 12344556
Q ss_pred ceEEEe
Q 047890 770 IRVVIN 775 (1134)
Q Consensus 770 v~~VI~ 775 (1134)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666663
No 364
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=48.92 E-value=10 Score=50.52 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEecc
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTAT 643 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSAT 643 (1134)
.+-++||+|||-.-+|..-+..+.+.+..+..++-+|..+=-
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHR 1275 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHR 1275 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSS
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 355689999998888877777888888877777755655543
No 365
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=48.82 E-value=22 Score=43.38 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=47.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhc-CCCcEEEeChHHHHHHHHhcccCCCCeEEE
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELD-QGADIVVATPGRLNDILEMKKIDFGQVSLL 607 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~-~~~dIIVaTPerL~~lL~~~~l~l~~l~lV 607 (1134)
..++||+|+++.-++.+++.|++. ++.+..+++. .....+..+. ...+||||| +.+ ...+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaT-----dv~-~rGiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTT-----DIS-EMGANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEEC-----GGG-GTTCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEEC-----cHH-HcCcccC-ceEE
Confidence 347999999999999999999886 4677788874 2333334443 357899999 333 3445564 6665
Q ss_pred E
Q 047890 608 V 608 (1134)
Q Consensus 608 V 608 (1134)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 3
No 366
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=48.68 E-value=30 Score=37.40 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=47.1
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cc----ee-ccccCcc
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VA----AR-GLDIKDI 770 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl----~~-GLDIp~v 770 (1134)
+.++||+|+++..++.+++.+.+ +..+..++++....+... .+. +.+|+|+|. .+ .. -+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 67899999999999888887753 456888899887655433 233 378999993 21 11 2355666
Q ss_pred eEEEe
Q 047890 771 RVVIN 775 (1134)
Q Consensus 771 ~~VI~ 775 (1134)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 66553
No 367
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=48.43 E-value=15 Score=39.12 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=19.9
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLIPAFILLR 520 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~llpal~~L~ 520 (1134)
++++.++.|+|||.+++-.+..+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4788899999999987776666554
No 368
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=48.25 E-value=19 Score=31.28 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=31.2
Q ss_pred CCCCCCcccccCCCCcceEeecCCcCceeeccCCCCCC
Q 047890 20 PTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPP 57 (1134)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (1134)
-.||..|..+ --++|..-|..-+|-|.-|-||--+.+
T Consensus 27 ~~LPeGW~~v-~H~SGmP~YlH~~trV~T~SrPY~lG~ 63 (79)
T 3le4_A 27 EPLPDGWIMT-FHNSGVPVYLHRESRVVTWSRPYFLGT 63 (79)
T ss_dssp CCCCTTEEEE-ECTTSSEEEEETTTTEEESSCCCCCTT
T ss_pred CcCCCccEEE-EecCCceEEEeccceEEeccCCeEecC
Confidence 4699999988 567788888899999999999987654
No 369
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=47.96 E-value=31 Score=36.99 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchhHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~l 512 (1134)
....+|+.+++|+|||..+-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999997644
No 370
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=47.67 E-value=19 Score=37.49 Aligned_cols=33 Identities=21% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHcCCCEEEEccCCCchhHHHH
Q 047890 480 PTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 480 prpiQ~eaI~~il~grdvLl~ApTGSGKTla~l 512 (1134)
-+.-+..++..+..+.-+.|.++.|+|||..+-
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 345577788888888989999999999997543
No 371
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=47.01 E-value=39 Score=42.02 Aligned_cols=22 Identities=32% Similarity=0.148 Sum_probs=17.7
Q ss_pred CCCEEEEccCCCchhHHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIPA 515 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llpa 515 (1134)
..++|+.+++|+|||.++-..+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 3589999999999998765443
No 372
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=44.92 E-value=13 Score=41.06 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=19.8
Q ss_pred HHHHHcCCCEEEEccCCCchhHHHH
Q 047890 488 WPIALQGRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 488 I~~il~grdvLl~ApTGSGKTla~l 512 (1134)
+..+..+.++|+.+++|+|||..+-
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHHH
Confidence 3445567899999999999997643
No 373
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=44.41 E-value=66 Score=38.43 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=52.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccC----CCCceEEecCCCCC--chhHHhhcCC-Cc---EEEeChHHHHHHHHhc
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRS----SRLSCTCLYGGAPK--GPQLRELDQG-AD---IVVATPGRLNDILEMK 597 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~----~~i~v~~l~GG~~~--~~~l~~l~~~-~d---IIVaTPerL~~lL~~~ 597 (1134)
...++||+|.++.-|+.+++.|.+.... ....+..++|.... ...+..+..+ .+ |+|+| +++ ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l-~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLL-TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STT-TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chh-hc
Confidence 4569999999999999999999876431 12235566666532 2333444442 22 77777 222 45
Q ss_pred ccCCCCeEEEEEcchh
Q 047890 598 KIDFGQVSLLVLDEAD 613 (1134)
Q Consensus 598 ~l~l~~l~lVVIDEAH 613 (1134)
.+++..+++||++..-
T Consensus 512 GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVV 527 (590)
T ss_dssp TCCCTTEEEEEEESCC
T ss_pred CccchheeEEEEEecC
Confidence 6788899999987654
No 374
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=43.64 E-value=8.9 Score=33.50 Aligned_cols=26 Identities=35% Similarity=0.671 Sum_probs=19.2
Q ss_pred CCCCCCCCcccccC-CC------CcceEeecCC
Q 047890 18 DDPTLPKPWKGLID-GS------TGLLYYWNPE 43 (1134)
Q Consensus 18 ~~~~~~~~~~~~~~-~~------~~~~~~~~~~ 43 (1134)
|+|.||..|+..+- -. ..-+||+.|.
T Consensus 9 ~~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP~ 41 (72)
T 2ky8_A 9 DCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPS 41 (72)
T ss_dssp ECSSSCTTCEEEEEECCSSTTTTCEEEEEECTT
T ss_pred cCCCCCCCCEEEEEEecCCCCCCceEEEEECCC
Confidence 68999999986543 22 3459999994
No 375
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=43.63 E-value=42 Score=38.81 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHH---cCCCEEEEccCCCchhHHHHH
Q 047890 480 PTPIQAQTWPIAL---QGRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 480 prpiQ~eaI~~il---~grdvLl~ApTGSGKTla~ll 513 (1134)
+-..=..+|..++ .|..++|.+++|+|||..+..
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 3444555666665 578899999999999987544
No 376
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=43.10 E-value=30 Score=38.81 Aligned_cols=71 Identities=17% Similarity=0.295 Sum_probs=47.6
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----ccee-ccccCc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAAR-GLDIKD 769 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~~-GLDIp~ 769 (1134)
...++||.++++..+..+++.+.+ ...+..++++..... .++.+..+..+|+|+|. .+.. .+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 457899999999999888887743 345666666655433 34556667889999993 2222 245555
Q ss_pred ceEEE
Q 047890 770 IRVVI 774 (1134)
Q Consensus 770 v~~VI 774 (1134)
+++||
T Consensus 184 ~~~vV 188 (414)
T 3eiq_A 184 IKMFV 188 (414)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66655
No 377
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=43.04 E-value=12 Score=42.38 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
+-++|++|||+|||..++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578899999999976543
No 378
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=42.59 E-value=54 Score=35.39 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=55.4
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh---HHhhcCC
Q 047890 503 TGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ---LRELDQG 579 (1134)
Q Consensus 503 TGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~---l~~l~~~ 579 (1134)
.-++|....+- ++..+.. .+.++||+|.++..++.+.+.|.+.. ++.+..++|+...... +..+..+
T Consensus 93 ~~s~K~~~L~~-ll~~~~~------~~~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~ 162 (271)
T 1z5z_A 93 RRSGKMIRTME-IIEEALD------EGDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQNN 162 (271)
T ss_dssp TTCHHHHHHHH-HHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHH-HHHHHHh------CCCeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHhcCC
Confidence 45788765332 2222211 35689999999999988888887631 3567778887754332 3334333
Q ss_pred --Cc-EEEeChHHHHHHHHhcccCCCCeEEEEEcch
Q 047890 580 --AD-IVVATPGRLNDILEMKKIDFGQVSLLVLDEA 612 (1134)
Q Consensus 580 --~d-IIVaTPerL~~lL~~~~l~l~~l~lVVIDEA 612 (1134)
+. |+|+|- .-...+++..++.||+=+.
T Consensus 163 ~~~~v~L~st~------~~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 163 PSVKFIVLSVK------AGGFGINLTSANRVIHFDR 192 (271)
T ss_dssp TTCCEEEEECC------TTCCCCCCTTCSEEEECSC
T ss_pred CCCCEEEEehh------hhcCCcCcccCCEEEEECC
Confidence 45 566661 2234556666776665433
No 379
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=42.58 E-value=19 Score=41.53 Aligned_cols=10 Identities=10% Similarity=0.229 Sum_probs=8.4
Q ss_pred EEEEcchhhh
Q 047890 606 LLVLDEADRM 615 (1134)
Q Consensus 606 lVVIDEAHrl 615 (1134)
+||+||+|..
T Consensus 197 ~livD~a~~~ 206 (409)
T 3jzl_A 197 IVFVDNCYGE 206 (409)
T ss_dssp EEEEECTTCT
T ss_pred EEEEeCCccc
Confidence 7899999864
No 380
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=42.41 E-value=21 Score=43.60 Aligned_cols=75 Identities=12% Similarity=0.226 Sum_probs=49.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHh--ccCCCCceEEecCC--------CCCchh---HHhhcC-CCcEEEeChHHHHHHH
Q 047890 529 GPTVLVLAPTRELATQIQDEANKF--GRSSRLSCTCLYGG--------APKGPQ---LRELDQ-GADIVVATPGRLNDIL 594 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl--~~~~~i~v~~l~GG--------~~~~~~---l~~l~~-~~dIIVaTPerL~~lL 594 (1134)
..++||.|+++..++.+.+.|.+. +...++.+..++|+ ....+. +..+.. ..+|||+| + +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT-----~-~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT-----T-V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE-----C-S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc-----c-c
Confidence 568999999999999999998875 22335778888887 443332 333443 47899999 2 3
Q ss_pred HhcccCCCCeEEEEE
Q 047890 595 EMKKIDFGQVSLLVL 609 (1134)
Q Consensus 595 ~~~~l~l~~l~lVVI 609 (1134)
-...+++.++++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 345677888888774
No 381
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=41.63 E-value=1.9e+02 Score=26.46 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEEE
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLLV 608 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lVV 608 (1134)
..++|||-....+...+...|+.. ++.+ +.+.+...++..+.. ..+++||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~----g~~v---------------------~~~~~~~~a~~~l~~-----~~~dlvi 53 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKD----GFNV---------------------IWAKNEQEAFTFLRR-----EKIDLVF 53 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGG----TCEE---------------------EEESSHHHHHHHHTT-----SCCSEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhC----CCEE---------------------EEECCHHHHHHHHhc-----cCCCEEE
Confidence 457899988877777766666543 1221 122334444454433 3568899
Q ss_pred EcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCchh
Q 047890 609 LDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD 647 (1134)
Q Consensus 609 IDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~~ 647 (1134)
+|- +.+..-...+..+.. ......+|++|+....+
T Consensus 54 ~d~---~~~~~g~~~~~~l~~-~~~~~pii~ls~~~~~~ 88 (142)
T 2qxy_A 54 VDV---FEGEESLNLIRRIRE-EFPDTKVAVLSAYVDKD 88 (142)
T ss_dssp EEC---TTTHHHHHHHHHHHH-HCTTCEEEEEESCCCHH
T ss_pred EeC---CCCCcHHHHHHHHHH-HCCCCCEEEEECCCCHH
Confidence 996 222111233333333 34567799998875443
No 382
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=41.08 E-value=36 Score=41.46 Aligned_cols=69 Identities=13% Similarity=0.283 Sum_probs=46.3
Q ss_pred CEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-c----ceec-c-ccCcc
Q 047890 703 SRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-V----AARG-L-DIKDI 770 (1134)
Q Consensus 703 ~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-v----l~~G-L-DIp~v 770 (1134)
.++||+++++..+...++.+.+ ++.+..++|+.........+. ...+|||+|. . +..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 6899999998888877766532 577889999886544332222 1488999993 2 2223 3 56667
Q ss_pred eEEEe
Q 047890 771 RVVIN 775 (1134)
Q Consensus 771 ~~VI~ 775 (1134)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77664
No 383
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=40.76 E-value=17 Score=36.98 Aligned_cols=22 Identities=23% Similarity=-0.020 Sum_probs=17.3
Q ss_pred HcCCCEEEEccCCCchhHHHHH
Q 047890 492 LQGRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~ll 513 (1134)
..++.++|++++|||||.++-.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHH
Confidence 3467789999999999987544
No 384
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=39.89 E-value=17 Score=41.09 Aligned_cols=20 Identities=45% Similarity=0.405 Sum_probs=17.1
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 047890 491 ALQGRDIVAIAKTGSGKTLG 510 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla 510 (1134)
+..+..++|+++||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44678999999999999975
No 385
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=39.77 E-value=19 Score=42.87 Aligned_cols=30 Identities=20% Similarity=0.087 Sum_probs=21.7
Q ss_pred CHHHHHHHHHH-HcCCCEEEEccCCCchhHH
Q 047890 481 TPIQAQTWPIA-LQGRDIVAIAKTGSGKTLG 510 (1134)
Q Consensus 481 rpiQ~eaI~~i-l~grdvLl~ApTGSGKTla 510 (1134)
++...+.+... ..+..++++++||||||..
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44444555443 4677899999999999975
No 386
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=39.63 E-value=32 Score=44.95 Aligned_cols=72 Identities=25% Similarity=0.274 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCCC-cEEEecCCCChhHHHHHHHHHhcCCCCeeeec-----ccceec-c
Q 047890 693 QQILRAQERGSRVIIFCSTKRLCDQLARSIGRNF-GAIAIHGDKSQGERDWVLNQFRSGKSPILVAT-----DVAARG-L 765 (1134)
Q Consensus 693 ~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~~-~v~~LhG~ms~~eR~~il~~FrsGe~~VLVAT-----dvl~~G-L 765 (1134)
..++..+..+.++||.++++..+..+++.|.+.+ .+.+++|+.+. +++.+|||+| +.+..+ +
T Consensus 218 l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~ 286 (1108)
T 3l9o_A 218 YAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSE 286 (1108)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSS
T ss_pred HHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCcc
Confidence 3444455678899999999999999888885522 57788998773 4568899999 344444 3
Q ss_pred ccCcceEEEe
Q 047890 766 DIKDIRVVIN 775 (1134)
Q Consensus 766 DIp~v~~VI~ 775 (1134)
.+.++.+||.
T Consensus 287 ~l~~l~lVVI 296 (1108)
T 3l9o_A 287 VMREVAWVIF 296 (1108)
T ss_dssp HHHHEEEEEE
T ss_pred ccccCCEEEE
Confidence 3566777664
No 387
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=39.47 E-value=45 Score=40.96 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----ccee
Q 047890 693 QQILRAQERGSRVIIFCSTKRLCDQLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAAR 763 (1134)
Q Consensus 693 ~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~~ 763 (1134)
..+++.+..+.++||.++++..+..+++.+++ ++.+..++|+....++ ..++.+|+|+|. .+..
T Consensus 59 l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~ 131 (702)
T 2p6r_A 59 MAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRN 131 (702)
T ss_dssp HHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHT
T ss_pred HHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHc
Confidence 34444445578999999999999999988843 4678889998776543 124788999994 2222
Q ss_pred ccc-cCcceEEEe
Q 047890 764 GLD-IKDIRVVIN 775 (1134)
Q Consensus 764 GLD-Ip~v~~VI~ 775 (1134)
+.+ +.++.+||.
T Consensus 132 ~~~~l~~~~~vIi 144 (702)
T 2p6r_A 132 RASWIKAVSCLVV 144 (702)
T ss_dssp TCSGGGGCCEEEE
T ss_pred ChhHHhhcCEEEE
Confidence 222 456666663
No 388
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=39.20 E-value=28 Score=35.75 Aligned_cols=33 Identities=21% Similarity=0.069 Sum_probs=23.0
Q ss_pred EEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcc
Q 047890 498 VAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAP 537 (1134)
Q Consensus 498 Ll~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvP 537 (1134)
|....+|.|||.+++..+..+.+ .+.+|+++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~-------~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKA-------AGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHH-------TTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEcc
Confidence 33457899999998777665544 4567887644
No 389
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=39.10 E-value=89 Score=37.10 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHc-----CCCEEEEccCCCchhHHHHH
Q 047890 481 TPIQAQTWPIALQ-----GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 481 rpiQ~eaI~~il~-----grdvLl~ApTGSGKTla~ll 513 (1134)
+....+.|..++. .+-++|.++.|.|||..+..
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~ 166 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAE 166 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHH
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHH
Confidence 4444455555553 24578889999999976543
No 390
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=39.01 E-value=23 Score=41.14 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcC--CCEEEEccCCCchhHH
Q 047890 482 PIQAQTWPIALQG--RDIVAIAKTGSGKTLG 510 (1134)
Q Consensus 482 piQ~eaI~~il~g--rdvLl~ApTGSGKTla 510 (1134)
+-+.++|..++.. .-++|+++||||||..
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3455566655543 3478899999999975
No 391
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=38.97 E-value=13 Score=38.92 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCchhHHH
Q 047890 494 GRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ 511 (1134)
++-++|.++||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456889999999999654
No 392
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=38.71 E-value=44 Score=41.22 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=53.3
Q ss_pred EEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCc---hhHHhhcC---CCcEEEeChHHHHHHHHhcccCCCCeE
Q 047890 532 VLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKG---PQLRELDQ---GADIVVATPGRLNDILEMKKIDFGQVS 605 (1134)
Q Consensus 532 vLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~---~~l~~l~~---~~dIIVaTPerL~~lL~~~~l~l~~l~ 605 (1134)
.||+|.++.-++.+++.|++. ++.+..++|+.... .....+.. ..+||||| +. -...+++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----di-~e~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----DA-IGMGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----GG-GGSSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----cH-HHCCcCc-Ccc
Confidence 366688888888888888874 56788999998765 34445553 37999999 33 3456677 899
Q ss_pred EEEEcchhhh
Q 047890 606 LLVLDEADRM 615 (1134)
Q Consensus 606 lVVIDEAHrl 615 (1134)
+||+-.+.+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9998877653
No 393
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=38.38 E-value=19 Score=35.72 Aligned_cols=21 Identities=29% Similarity=0.088 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCchhHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llp 514 (1134)
.+.+++++++|||||.++-..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 456889999999999875543
No 394
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=38.29 E-value=24 Score=41.63 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=18.1
Q ss_pred HcCCCEEEEccCCCchhHHHHH
Q 047890 492 LQGRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~ll 513 (1134)
-+|..++|.++.|+|||.....
T Consensus 151 gkGQr~~Ifgg~G~GKT~L~~~ 172 (482)
T 2ck3_D 151 AKGGKIGLFGGAGVGKTVLIME 172 (482)
T ss_dssp ETTCEEEEEECTTSSHHHHHHH
T ss_pred ccCCeeeeecCCCCChHHHHHH
Confidence 3688999999999999976443
No 395
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=38.27 E-value=1.2e+02 Score=32.75 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=9.0
Q ss_pred EEEEcchhhhh
Q 047890 606 LLVLDEADRML 616 (1134)
Q Consensus 606 lVVIDEAHrll 616 (1134)
+||+||+|...
T Consensus 116 ~li~D~a~~~~ 126 (331)
T 1pff_A 116 LVIVDNTFASP 126 (331)
T ss_dssp EEEEECTTTHH
T ss_pred EEEEECCCccc
Confidence 79999999743
No 396
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=38.04 E-value=15 Score=36.76 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ 511 (1134)
.++-++|++|+|+|||..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999753
No 397
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=37.86 E-value=17 Score=43.22 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHH
Q 047890 484 QAQTWPIALQGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 484 Q~eaI~~il~grdvLl~ApTGSGKTla~ 511 (1134)
=..++..+..+.++|+.+++|+|||..+
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3445556677899999999999999753
No 398
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=37.44 E-value=29 Score=46.23 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=29.5
Q ss_pred CCCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEe
Q 047890 601 FGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYT 641 (1134)
Q Consensus 601 l~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllS 641 (1134)
+.+-+++|+||+-.-+|..-+..+.+.+..+.+++-+|+.|
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 34667999999998888877777777777665555444444
No 399
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=37.28 E-value=77 Score=35.83 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=38.4
Q ss_pred CCCEEEEEcccHHHHHH-HHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCc-EEEeCh----------HHHHHHHH
Q 047890 528 NGPTVLVLAPTRELATQ-IQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGAD-IVVATP----------GRLNDILE 595 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q-~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~d-IIVaTP----------erL~~lL~ 595 (1134)
.+..||+..|+-.-... |...++.+ ++.+..+.-. +.+.....+...+. |++++| +.|.++.+
T Consensus 100 ~gd~Vl~~~~~y~~~~~~~~~~~~~~----g~~~~~v~~~-d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~ 174 (404)
T 1e5e_A 100 AGDHLISDECLYGCTHALFEHALTKF----GIQVDFINTA-IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAH 174 (404)
T ss_dssp TTCEEEEESCCCHHHHHHHHTHHHHT----TCEEEEECTT-STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCCCchhHHHHHHHHHHHc----CCEEEEECCC-CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHH
Confidence 45688888887443222 22223333 3444443322 22333333333333 445554 23444444
Q ss_pred h-cccCCCCeEEEEEcchhhhhc
Q 047890 596 M-KKIDFGQVSLLVLDEADRMLD 617 (1134)
Q Consensus 596 ~-~~l~l~~l~lVVIDEAHrll~ 617 (1134)
+ ..+ +||+||+|....
T Consensus 175 ~~~~~------~li~De~~~~~~ 191 (404)
T 1e5e_A 175 SQEGV------LVIADNTFCSPM 191 (404)
T ss_dssp TSTTC------EEEEECTTTCTT
T ss_pred hhcCC------EEEEECCCchhh
Confidence 3 222 799999997543
No 400
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=37.20 E-value=16 Score=40.83 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~ll 513 (1134)
-++|.+|||+|||..+..
T Consensus 5 ~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 467889999999976443
No 401
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=36.96 E-value=36 Score=41.02 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=28.4
Q ss_pred CCeEEEEEcchhhhhccCchHHHHHHHHhCCCCceEEEEec
Q 047890 602 GQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTA 642 (1134)
Q Consensus 602 ~~l~lVVIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSA 642 (1134)
.+-+++|+||.-.-+|......+.+.+..+....-+|+.|-
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 537 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH 537 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 45579999999988887777777777777655443444443
No 402
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=36.74 E-value=17 Score=40.64 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~ll 513 (1134)
-++|++|||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 367889999999976543
No 403
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=36.56 E-value=3.2e+02 Score=26.92 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=45.8
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecccceeccccCcceEEEeecCC
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFP 779 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdvl~~GLDIp~v~~VI~~d~P 779 (1134)
...+.|+|.+...++.|.+.|.+ ++.+..+..+.. .-.-.|.|+|--.+.|+.+ +.||.+++.
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETCB
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecCC
Confidence 46788999999999999999965 466666654331 1134699999999999986 666666653
No 404
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=35.92 E-value=21 Score=38.14 Aligned_cols=16 Identities=31% Similarity=0.129 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHHH
Q 047890 497 IVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 497 vLl~ApTGSGKTla~l 512 (1134)
++|+++||||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6789999999997643
No 405
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=35.64 E-value=31 Score=38.37 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=16.5
Q ss_pred EEEEccCCCchhHHHHHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~ 518 (1134)
++++++.|+|||.++...+..+
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6677999999998866555433
No 406
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=35.57 E-value=22 Score=40.48 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..+++|.++ +.-+.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 45666788774 33499999999873
No 407
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=35.48 E-value=21 Score=36.54 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCCchhHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ 511 (1134)
.++-++|++|+|+|||..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999753
No 408
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=35.48 E-value=20 Score=36.93 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCchhHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ 511 (1134)
.+.-++|.+|+|+|||..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3556788999999999764
No 409
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=35.18 E-value=37 Score=40.40 Aligned_cols=28 Identities=18% Similarity=0.060 Sum_probs=21.3
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHH
Q 047890 492 LQGRDIVAIAKTGSGKTLGYLIPAFILL 519 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~llpal~~L 519 (1134)
-.|..++|.++.|+|||..++-.|....
T Consensus 160 grGQR~~I~g~~g~GKT~Lal~~I~~q~ 187 (510)
T 2ck3_A 160 GRGQRELIIGDRQTGKTSIAIDTIINQK 187 (510)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 4688999999999999987554444443
No 410
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=35.15 E-value=53 Score=35.57 Aligned_cols=58 Identities=10% Similarity=-0.043 Sum_probs=34.5
Q ss_pred HHHHHcC-----CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 047890 488 WPIALQG-----RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEANKFG 553 (1134)
Q Consensus 488 I~~il~g-----rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~kl~ 553 (1134)
+..++.| ..+|+.+.+|+|||+.++--+...++ .+.++||++-. +-..++...++.++
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~-------~Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK-------SDNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH-------TTCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH-------CCCcEEEEEEe-CCHHHHHHHHHHcC
Confidence 4455544 45677767777777433333333443 46688888764 44556666666664
No 411
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=34.79 E-value=32 Score=38.06 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=24.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
+++.+..|.|||.++...++.+.+ .+.+||+|-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~-------~G~rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMAR-------SGKKTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHH-------CCCcEEEEe
Confidence 355699999999998887776654 355666665
No 412
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=34.65 E-value=2.6e+02 Score=25.24 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=49.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcccCCCCeEEE
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKKIDFGQVSLL 607 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~l~l~~l~lV 607 (1134)
...++|||-....+...+...|+..+ +.+.. ++.+...++..+... .+++|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g----~~v~~--------------------~~~~~~~a~~~~~~~-----~~dli 58 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLG----YDVLG--------------------VFDNGEEAVRCAPDL-----RPDIA 58 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHT----CEEEE--------------------EESSHHHHHHHHHHH-----CCSEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCC----CeeEE--------------------EECCHHHHHHHHHhC-----CCCEE
Confidence 45689999999888888777777642 22210 234445555555432 35789
Q ss_pred EEcchhhhhccCchHHHHHHHHhCCCCceEEEEeccCch
Q 047890 608 VLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPK 646 (1134)
Q Consensus 608 VIDEAHrll~~gf~~~i~~IL~~l~~~~qiLllSATl~~ 646 (1134)
|+|-.-- .+..-...+..+... ....+|++|+....
T Consensus 59 i~d~~~~-~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~ 94 (140)
T 3cg0_A 59 LVDIMLC-GALDGVETAARLAAG--CNLPIIFITSSQDV 94 (140)
T ss_dssp EEESSCC-SSSCHHHHHHHHHHH--SCCCEEEEECCCCH
T ss_pred EEecCCC-CCCCHHHHHHHHHhC--CCCCEEEEecCCCH
Confidence 9984321 011222334444333 56778999887543
No 413
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=34.61 E-value=69 Score=33.59 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=34.1
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-CCc-EEEecCCCChhHHHHHHHHHhcCCCCeeeec
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-NFG-AIAIHGDKSQGERDWVLNQFRSGKSPILVAT 758 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-~~~-v~~LhG~ms~~eR~~il~~FrsGe~~VLVAT 758 (1134)
+.++||+|+++..++.+++.+.+ +.. +..++++.. ...+|+|+|
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T 178 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVST 178 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEe
Confidence 67899999999999999888865 344 677777654 256788888
No 414
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=34.49 E-value=1.9e+02 Score=32.02 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=14.1
Q ss_pred CCCEEEEccCCCchhHHH
Q 047890 494 GRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ 511 (1134)
+.-+.|.+++|+|||..+
T Consensus 55 g~~v~i~G~~GaGKSTLl 72 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTI 72 (337)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345778899999999753
No 415
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=34.35 E-value=31 Score=40.13 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=16.1
Q ss_pred CCEEEEccCCCchhHHHHH
Q 047890 495 RDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ll 513 (1134)
+.+|+.+|+|+|||..+..
T Consensus 64 ~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHH
Confidence 6799999999999987543
No 416
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=34.33 E-value=64 Score=35.83 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=8.6
Q ss_pred EEEEcchhhh
Q 047890 606 LLVLDEADRM 615 (1134)
Q Consensus 606 lVVIDEAHrl 615 (1134)
+||+||+|..
T Consensus 173 ~li~D~a~~~ 182 (391)
T 3dr4_A 173 LVIEDAAEAV 182 (391)
T ss_dssp EEEEECTTCT
T ss_pred EEEEECcccc
Confidence 7999999974
No 417
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=34.31 E-value=66 Score=39.49 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=51.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccC--------------------------------CCCceEEecCCCCCchhHHh
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRS--------------------------------SRLSCTCLYGGAPKGPQLRE 575 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~--------------------------------~~i~v~~l~GG~~~~~~l~~ 575 (1134)
.+..+||+|+++.-++.+++.+.+.... ....+..++++.........
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3468999999999999998888875322 01236778888765443332
Q ss_pred ---hc-CCCcEEEeChHHHHHHHHhcccCCCCeEEEEEc
Q 047890 576 ---LD-QGADIVVATPGRLNDILEMKKIDFGQVSLLVLD 610 (1134)
Q Consensus 576 ---l~-~~~dIIVaTPerL~~lL~~~~l~l~~l~lVVID 610 (1134)
+. ....||||| +. -...+++..+.+||.+
T Consensus 331 ~~~f~~g~~~vlvaT-----~~-l~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 331 EEGFRQRKIKVIVAT-----PT-LAAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHTTCSCEEEEC-----GG-GGGSSCCCBSEEEECC
T ss_pred HHHHHcCCCeEEEEC-----hH-HhcccCCCceEEEEeC
Confidence 22 347899999 23 2456678888876643
No 418
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=34.22 E-value=1.1e+02 Score=34.77 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=36.9
Q ss_pred CCCEEEEEcccHHHHHHHHHH-HHHhccCCCCceEEecCCCCCchhHHhhcCCCc-EEEeCh----------HHHHHHHH
Q 047890 528 NGPTVLVLAPTRELATQIQDE-ANKFGRSSRLSCTCLYGGAPKGPQLRELDQGAD-IVVATP----------GRLNDILE 595 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~e-l~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~d-IIVaTP----------erL~~lL~ 595 (1134)
.+..||+..|+-.-....... +..+ ++.+..+.-. +.+.....+..... |++++| +.|.++.+
T Consensus 119 ~Gd~Vi~~~~~y~~~~~~~~~~~~~~----g~~~~~v~~~-d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~ 193 (414)
T 3ndn_A 119 AGDRLVAARSLFGSCFVVCSEILPRW----GVQTVFVDGD-DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAH 193 (414)
T ss_dssp TTCEEEEESCCCHHHHHHHHTHHHHT----TCEEEEECTT-CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CCCEEEEcCCccchHHHHHHHHHHHc----CcEEEEeCCC-CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHH
Confidence 456788888764333222222 2222 4444444322 22222333444444 444555 23444444
Q ss_pred hcccCCCCeEEEEEcchhh
Q 047890 596 MKKIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 596 ~~~l~l~~l~lVVIDEAHr 614 (1134)
...+ +||+||++.
T Consensus 194 ~~g~------~livDe~~~ 206 (414)
T 3ndn_A 194 AAGA------KVVLDNVFA 206 (414)
T ss_dssp HTTC------EEEEECTTT
T ss_pred HcCC------EEEEECCCc
Confidence 3332 799999986
No 419
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=33.58 E-value=18 Score=38.41 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
.+.+|+.+++|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997644
No 420
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=33.36 E-value=19 Score=38.93 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=16.3
Q ss_pred HcCCCEEEEccCCCchhHHH
Q 047890 492 LQGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~ 511 (1134)
..+.-++++++||||||..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 45667889999999999764
No 421
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=33.24 E-value=58 Score=41.67 Aligned_cols=79 Identities=22% Similarity=0.235 Sum_probs=42.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEec--------CCCCC---chhHHhhcC--CCcEEEeChHHHHHHH
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLY--------GGAPK---GPQLRELDQ--GADIVVATPGRLNDIL 594 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~--------GG~~~---~~~l~~l~~--~~dIIVaTPerL~~lL 594 (1134)
.+.++||.|+++..++.+.+.|.+......+.+..++ ++... ...+..+.. ..+|||+| +.
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT-----~~- 703 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT-----SV- 703 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEE-----CC-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEe-----Cc-
Confidence 4579999999999999999999886322234444443 33332 233344444 47899999 22
Q ss_pred HhcccCCCCeEEEEEcch
Q 047890 595 EMKKIDFGQVSLLVLDEA 612 (1134)
Q Consensus 595 ~~~~l~l~~l~lVVIDEA 612 (1134)
-...+++..+++||+=+.
T Consensus 704 ~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 704 ADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ------CCCCSEEEEESC
T ss_pred hhcCCcchhCCEEEEeCC
Confidence 244567888888886443
No 422
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=33.21 E-value=38 Score=37.99 Aligned_cols=11 Identities=27% Similarity=0.099 Sum_probs=9.1
Q ss_pred EEEEcchhhhh
Q 047890 606 LLVLDEADRML 616 (1134)
Q Consensus 606 lVVIDEAHrll 616 (1134)
+||+||+|...
T Consensus 180 ~li~Dea~~~g 190 (399)
T 2oga_A 180 HIVEDAAQAHG 190 (399)
T ss_dssp EECEECTTCTT
T ss_pred EEEEECccccc
Confidence 79999999743
No 423
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=33.18 E-value=66 Score=37.04 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=35.8
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-CCc-EEEecCCCChhHHHHHHHHHhcCCCCeeeec
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-NFG-AIAIHGDKSQGERDWVLNQFRSGKSPILVAT 758 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-~~~-v~~LhG~ms~~eR~~il~~FrsGe~~VLVAT 758 (1134)
+.++||+|+++..+..+++.|.+ +.. +..++|+... ..+|+|+|
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T 178 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVST 178 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEE
Confidence 67999999999999999998876 455 7888887653 46788888
No 424
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=32.84 E-value=1.3e+02 Score=34.48 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=36.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCc-EEEeCh----------HHHHHHHHh
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGAD-IVVATP----------GRLNDILEM 596 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~d-IIVaTP----------erL~~lL~~ 596 (1134)
.+..||+..+.-.= ....+..++...++.+..+... +.+.....+..... |++.+| +.|.++.++
T Consensus 120 ~Gd~Vi~~~~~y~~---~~~~~~~~l~~~G~~v~~v~~~-d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~ 195 (415)
T 2fq6_A 120 QGDHVLMTNTAYEP---SQDFCSKILSKLGVTTSWFDPL-IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRS 195 (415)
T ss_dssp TTCEEEEETTSCHH---HHHHHHHTGGGGTCEEEEECTT-CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred CCCEEEEeCCCchH---HHHHHHHHHHHcCcEEEEECCC-CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHh
Confidence 45577777764221 1222223333335665555332 22333333333333 344444 234444443
Q ss_pred --cccCCCCeEEEEEcchhhh
Q 047890 597 --KKIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 597 --~~l~l~~l~lVVIDEAHrl 615 (1134)
..+ +||+||++..
T Consensus 196 ~~~g~------~livD~a~a~ 210 (415)
T 2fq6_A 196 VVPDA------IIMIDNTWAA 210 (415)
T ss_dssp HCTTC------EEEEECTTTT
T ss_pred hcCCC------EEEEECCCcc
Confidence 322 6999999963
No 425
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=32.72 E-value=31 Score=34.12 Aligned_cols=21 Identities=24% Similarity=0.056 Sum_probs=17.1
Q ss_pred cCCCEEEEccCCCchhHHHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ll 513 (1134)
....+++.+++|+|||.++-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 456799999999999987543
No 426
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=32.69 E-value=55 Score=40.27 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=40.6
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd 759 (1134)
.+.++||.++++..+..+++.+.+ ++.+..++|+....++. .++.+|+|+|.
T Consensus 67 ~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tp 122 (720)
T 2zj8_A 67 QGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATA 122 (720)
T ss_dssp HCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECH
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECH
Confidence 478999999999999999888852 56788999987765431 24678999994
No 427
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=32.60 E-value=27 Score=34.16 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
+..++|.++.|||||..+-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4568999999999997643
No 428
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=32.48 E-value=1.3e+02 Score=37.61 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=49.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhH---HhhcCC---C-cEEEeChHHHHHHHHhcccC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQL---RELDQG---A-DIVVATPGRLNDILEMKKID 600 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l---~~l~~~---~-dIIVaTPerL~~lL~~~~l~ 600 (1134)
.+.++||++.....+.-+.+.|... ++.+..++|+....... ..+..+ . -+|++| + .-...++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt-----~-agg~GlN 640 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST-----R-AGGLGIN 640 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH-----H-HHTTTCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec-----c-cccCCCC
Confidence 4568999999999888888877765 56778888887654433 334331 2 355655 2 2244567
Q ss_pred CCCeEEEEEcchh
Q 047890 601 FGQVSLLVLDEAD 613 (1134)
Q Consensus 601 l~~l~lVVIDEAH 613 (1134)
+..++.||+=+.+
T Consensus 641 L~~a~~VI~~D~~ 653 (800)
T 3mwy_W 641 LMTADTVVIFDSD 653 (800)
T ss_dssp CTTCCEEEESSCC
T ss_pred ccccceEEEecCC
Confidence 7777777764443
No 429
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=32.46 E-value=65 Score=35.52 Aligned_cols=55 Identities=7% Similarity=0.070 Sum_probs=33.4
Q ss_pred HHHHHHHHhcccCCCCeEEEEEcchhh-hhccCchHHHHHHHHhCCCCceEEEEeccC
Q 047890 588 GRLNDILEMKKIDFGQVSLLVLDEADR-MLDMGFEPQIRKIVNEMPPHRQTLMYTATW 644 (1134)
Q Consensus 588 erL~~lL~~~~l~l~~l~lVVIDEAHr-ll~~gf~~~i~~IL~~l~~~~qiLllSATl 644 (1134)
..|.+.+....+ +....+|||||+|. +. ....+.+.+.++..+.+..+|+.+.++
T Consensus 62 ~~l~~~~~~~pl-f~~~kvvii~~~~~kl~-~~~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 62 NAIFSLCQAMSL-FASRQTLLLLLPENGPN-AAINEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp HHHHHHHHHHHH-CCSCEEEEEECCSSCCC-TTHHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred HHHHHHhcCcCC-ccCCeEEEEECCCCCCC-hHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 344444433333 45688999999998 54 334566777777766666555554443
No 430
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=32.46 E-value=59 Score=33.45 Aligned_cols=68 Identities=10% Similarity=0.219 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCEEEE--EeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHhcCCCCeeeeccc
Q 047890 690 RRLQQILRAQERGSRVII--FCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDV 760 (1134)
Q Consensus 690 ~~L~~llk~~~~~~kvLV--F~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATdv 760 (1134)
+.|..+.+......++-| |-+....++.+++.|.-++....++ +.++-+.++++.++..++++|+..+
T Consensus 82 Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~---~~~e~~~~i~~l~~~G~~vvVG~~~ 151 (196)
T 2q5c_A 82 DTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFS---SEDEITTLISKVKTENIKIVVSGKT 151 (196)
T ss_dssp HHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEEC---SGGGHHHHHHHHHHTTCCEEEECHH
T ss_pred HHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeC---CHHHHHHHHHHHHHCCCeEEECCHH
Confidence 444555555444555443 6677788899999997776666665 4455566888888888898888643
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=32.45 E-value=22 Score=39.90 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~ll 513 (1134)
.++|+++||+|||..+..
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986543
No 432
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=32.20 E-value=21 Score=39.94 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.6
Q ss_pred HcCCCEEEEccCCCchhHH
Q 047890 492 LQGRDIVAIAKTGSGKTLG 510 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla 510 (1134)
..+..++++++||||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4678999999999999974
No 433
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=32.11 E-value=40 Score=37.40 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=8.6
Q ss_pred EEEEcchhhh
Q 047890 606 LLVLDEADRM 615 (1134)
Q Consensus 606 lVVIDEAHrl 615 (1134)
+||+||+|..
T Consensus 156 ~li~D~a~~~ 165 (393)
T 1mdo_A 156 PVIEDAAHAT 165 (393)
T ss_dssp CBCEECTTCT
T ss_pred eEEEECcccc
Confidence 6899999975
No 434
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=31.96 E-value=22 Score=35.86 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ 511 (1134)
.+.-+.|.+++|+|||..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666788999999999753
No 435
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=31.96 E-value=31 Score=40.04 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=8.7
Q ss_pred EEEEcchhhhh
Q 047890 606 LLVLDEADRML 616 (1134)
Q Consensus 606 lVVIDEAHrll 616 (1134)
+||+||+|...
T Consensus 214 ~livD~a~~~~ 224 (427)
T 3hvy_A 214 IVFVDNCYGEF 224 (427)
T ss_dssp EEEEECTTCTT
T ss_pred EEEEECCcccc
Confidence 79999998533
No 436
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=31.86 E-value=29 Score=38.17 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ 511 (1134)
....+||.+++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999764
No 437
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=31.74 E-value=24 Score=34.66 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHHH
Q 047890 495 RDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~ 511 (1134)
.-++|++++|||||.++
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999864
No 438
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=31.72 E-value=32 Score=37.17 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.2
Q ss_pred CEEEEccCCCchhHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~ll 513 (1134)
.+|+.+++|+|||.++-.
T Consensus 49 ~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEESCSSSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 689999999999987543
No 439
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=31.69 E-value=38 Score=38.00 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=24.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
+++.+..|.|||.++...++.+.+ .+.+||+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~-------~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAE-------KGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHH-------SSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHH-------CCCeEEEEe
Confidence 455699999999998877776654 355676665
No 440
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=31.62 E-value=22 Score=35.78 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.1
Q ss_pred HcCCCEEEEccCCCchhHHH
Q 047890 492 LQGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 492 l~grdvLl~ApTGSGKTla~ 511 (1134)
..+.-++|.+++|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667889999999999753
No 441
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=31.61 E-value=36 Score=35.12 Aligned_cols=31 Identities=29% Similarity=0.252 Sum_probs=21.5
Q ss_pred EEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 499 AIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 499 l~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
.....|.|||.+++..+..+.+ .+.+||+|=
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la~-------~g~~VlliD 38 (237)
T 1g3q_A 8 VSGKGGTGKTTVTANLSVALGD-------RGRKVLAVD 38 (237)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHH-------TTCCEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHHHHh-------cCCeEEEEe
Confidence 3478899999988877666544 345676663
No 442
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=31.60 E-value=36 Score=37.12 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=28.0
Q ss_pred hHHHHHHHcCCCCCCHHHHHH-HHHHHcCC-----CEEEEccCCCchhHHHHH
Q 047890 467 PRVASMHSAGFSSPTPIQAQT-WPIALQGR-----DIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 467 ~~l~~l~~~Gf~~prpiQ~ea-I~~il~gr-----dvLl~ApTGSGKTla~ll 513 (1134)
+++.-|...||. +++-.. +...++++ .+|+.+|.|+|||+.+..
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 445555556654 555333 55555553 478889999999987553
No 443
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=31.53 E-value=74 Score=40.11 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=40.6
Q ss_pred cCCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc
Q 047890 701 RGSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD 759 (1134)
Q Consensus 701 ~~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd 759 (1134)
.+..++|.|.|++.|...++.+.. ++.+.++.|+++...+.... .++|+|+|.
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 467899999999999887776643 57788999999876554332 378999994
No 444
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=31.51 E-value=29 Score=34.30 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
+.-+++.++.|||||.++-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688899999999987543
No 445
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=31.40 E-value=42 Score=35.31 Aligned_cols=31 Identities=32% Similarity=0.288 Sum_probs=21.9
Q ss_pred EEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 047890 498 VAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535 (1134)
Q Consensus 498 Ll~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVL 535 (1134)
|+....|.|||.+++..+..+.+ .+.+||+|
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~-------~g~~Vlli 37 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQ-------LGHDVTIV 37 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHH-------TTCCEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHh-------CCCcEEEE
Confidence 44588999999998777666544 34467665
No 446
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=31.28 E-value=32 Score=39.89 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=8.8
Q ss_pred EEEEcchhhhh
Q 047890 606 LLVLDEADRML 616 (1134)
Q Consensus 606 lVVIDEAHrll 616 (1134)
+||+||+|...
T Consensus 214 ~livD~a~~~~ 224 (427)
T 3i16_A 214 ICFVDNCYGEF 224 (427)
T ss_dssp EEEEECTTTTT
T ss_pred EEEEECCCccc
Confidence 78999999643
No 447
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=31.25 E-value=41 Score=33.49 Aligned_cols=21 Identities=29% Similarity=0.091 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~llp 514 (1134)
+..+++.+..|+|||..+-..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 345788899999999875543
No 448
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=31.15 E-value=29 Score=38.85 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..++.|.++ +.-+.||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 45566788774 44599999999873
No 449
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=31.10 E-value=29 Score=39.49 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 486 QTWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 486 eaI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
..|..++.|.++ +.-+.||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 345666788774 33499999999773
No 450
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=31.09 E-value=24 Score=34.02 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=13.9
Q ss_pred CEEEEccCCCchhHHHH
Q 047890 496 DIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~l 512 (1134)
-++|.+++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998644
No 451
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=31.03 E-value=4.9 Score=42.69 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=9.2
Q ss_pred cceeEEEecccchHHHHHHHHHH
Q 047890 798 TGVAHTFFSEQDSKYAADLVKVL 820 (1134)
Q Consensus 798 kG~~ii~~~~~d~~~~~~l~k~L 820 (1134)
+|.|+|-|.. ...+.+.++.|
T Consensus 112 kGfaFV~f~~--~~~a~~Ai~~l 132 (229)
T 3q2s_C 112 KGFALVGVGS--EASSKKLMDLL 132 (229)
T ss_dssp EEEEEEEESC--TTHHHHHHTTS
T ss_pred ceEEEEEECC--HHHHHHHHHHc
Confidence 3455555443 33344444433
No 452
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=30.95 E-value=22 Score=36.32 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=16.9
Q ss_pred HHcCCCEEEEccCCCchhHHH
Q 047890 491 ALQGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla~ 511 (1134)
+..++-++|++++|+|||..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345677899999999999753
No 453
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=30.83 E-value=61 Score=36.48 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=9.8
Q ss_pred EEEEcchhhhhc
Q 047890 606 LLVLDEADRMLD 617 (1134)
Q Consensus 606 lVVIDEAHrll~ 617 (1134)
+||+||+|....
T Consensus 159 ~li~D~a~~~~~ 170 (418)
T 2c81_A 159 FVIEDCAQSHGS 170 (418)
T ss_dssp EEEEECTTCTTC
T ss_pred EEEEECcccccC
Confidence 799999997553
No 454
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=30.78 E-value=1.2e+02 Score=33.30 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=8.2
Q ss_pred EEEEcchhh
Q 047890 606 LLVLDEADR 614 (1134)
Q Consensus 606 lVVIDEAHr 614 (1134)
+||+||+|.
T Consensus 207 ~li~De~~~ 215 (399)
T 3tqx_A 207 LVMVDDSHA 215 (399)
T ss_dssp EEEEECTTT
T ss_pred EEEEECCcc
Confidence 799999995
No 455
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=30.67 E-value=2.2e+02 Score=25.83 Aligned_cols=69 Identities=10% Similarity=-0.037 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCCCcEEEecCCCChhHHHHHHHHHhc----CCCCeeeecc
Q 047890 688 KERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRS----GKSPILVATD 759 (1134)
Q Consensus 688 k~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~~~v~~LhG~ms~~eR~~il~~Frs----Ge~~VLVATd 759 (1134)
....+..++... .+-.++..+.+...+..+... ..+.++++.-.+...+-.++++.++. ..+.|||.|.
T Consensus 20 ~~~~l~~~L~~~-~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 20 FADMLTQFLENL-FPYAKIKIAYNPFDAGDLLHT--VKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTG 92 (143)
T ss_dssp HHHHHHHHHHHH-CTTCEEEEECSHHHHHHHHHH--TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEES
T ss_pred HHHHHHHHHHhc-cCccEEEEECCHHHHHHHHHh--cCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeC
Confidence 344555555542 334545566665555444432 34667777777765555566676665 3455665554
No 456
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=30.66 E-value=26 Score=35.08 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
+..++|++.+|||||.++-
T Consensus 10 ~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4668999999999998753
No 457
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=30.64 E-value=3.3e+02 Score=25.18 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=51.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCcEEEeChHHHHHHHHhcc----cCCCCe
Q 047890 529 GPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATPGRLNDILEMKK----IDFGQV 604 (1134)
Q Consensus 529 g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~dIIVaTPerL~~lL~~~~----l~l~~l 604 (1134)
..++|||-........+.+.|++.+.. ..+ +.+.+....+..+.... .....+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~--~~v---------------------~~~~~~~~al~~l~~~~~~~~~~~~~~ 60 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVN--NEI---------------------IAFTDGTSALNYLFGDDKSGRVSAGRA 60 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCC--CCE---------------------EEESSHHHHHHHHHCTTSSSGGGTTCB
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCc--ceE---------------------EEeCCHHHHHHHHhccccccccccCCC
Confidence 357899999888888777777765321 011 12233444455553211 123468
Q ss_pred EEEEEcchhhhhccCchHHHHHHHHh-CCCCceEEEEeccCchhH
Q 047890 605 SLLVLDEADRMLDMGFEPQIRKIVNE-MPPHRQTLMYTATWPKDV 648 (1134)
Q Consensus 605 ~lVVIDEAHrll~~gf~~~i~~IL~~-l~~~~qiLllSATl~~~v 648 (1134)
++||+|-. |.+..-...+..+... ......+|++|+....+.
T Consensus 61 dliilD~~--l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~ 103 (152)
T 3heb_A 61 QLVLLDLN--LPDMTGIDILKLVKENPHTRRSPVVILTTTDDQRE 103 (152)
T ss_dssp EEEEECSB--CSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHH
T ss_pred CEEEEeCC--CCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHH
Confidence 89999942 2232223334443331 335667999998755443
No 458
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=30.63 E-value=1.5e+02 Score=33.34 Aligned_cols=77 Identities=12% Similarity=0.017 Sum_probs=36.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchhHHhhcCCCc-EEEeCh----------HHHHHHHHh
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGAD-IVVATP----------GRLNDILEM 596 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~d-IIVaTP----------erL~~lL~~ 596 (1134)
.+..||+..|+-.-. ...+..+....++.+..+.-. +.+.....+..... |+|.+| ..|.++.++
T Consensus 104 ~gd~Vi~~~~~y~~~---~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~ 179 (392)
T 3qhx_A 104 PGDHVVIPDDAYGGT---FRLIDKVFTGWNVEYTPVALA-DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGAD 179 (392)
T ss_dssp TTCEEEEETTCCHHH---HHHHHHTGGGGTCEEEEECTT-CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcchH---HHHHHHHHHhcCcEEEEeCCC-CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHH
Confidence 455788877764222 222333333334555444322 22222233333333 334444 234444443
Q ss_pred cccCCCCeEEEEEcchhh
Q 047890 597 KKIDFGQVSLLVLDEADR 614 (1134)
Q Consensus 597 ~~l~l~~l~lVVIDEAHr 614 (1134)
..+ +||+||++.
T Consensus 180 ~g~------~li~D~~~~ 191 (392)
T 3qhx_A 180 SSA------KVLVDNTFA 191 (392)
T ss_dssp HTC------EEEEECTTT
T ss_pred cCC------EEEEECCCc
Confidence 332 799999986
No 459
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=30.60 E-value=77 Score=33.84 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=41.3
Q ss_pred CCEEEEEeCcHHHHHHHHHHhcC-----CCcEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-cceec--cccCcceEE
Q 047890 702 GSRVIIFCSTKRLCDQLARSIGR-----NFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-VAARG--LDIKDIRVV 773 (1134)
Q Consensus 702 ~~kvLVF~nT~~~ae~La~~L~~-----~~~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-vl~~G--LDIp~v~~V 773 (1134)
..++||+|+++..++.+++.|.+ ...+..+.++....+ ......+|+|+|. .+..- ..+..+++|
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~v 229 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHHhhCCEE
Confidence 34999999999988888777743 234566666654332 1235678999993 22222 234455555
Q ss_pred Ee
Q 047890 774 IN 775 (1134)
Q Consensus 774 I~ 775 (1134)
|.
T Consensus 230 Ii 231 (282)
T 1rif_A 230 MN 231 (282)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 460
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=30.40 E-value=38 Score=35.96 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=20.8
Q ss_pred EccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 047890 500 IAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535 (1134)
Q Consensus 500 ~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVL 535 (1134)
....|.|||.+++..+..+.+ .+.+||+|
T Consensus 25 s~kGGvGKTT~a~nLA~~la~-------~G~~Vlli 53 (262)
T 2ph1_A 25 SGKGGVGKSTVTALLAVHYAR-------QGKKVGIL 53 (262)
T ss_dssp CSSSCTTHHHHHHHHHHHHHH-------TTCCEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHH-------CCCeEEEE
Confidence 478899999998877666554 34567665
No 461
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.36 E-value=34 Score=39.45 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=19.5
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..++.|.++ +.-+.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 57777889774 33499999999874
No 462
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=30.30 E-value=36 Score=37.88 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=24.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 497 IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
+++.+..|.|||.++...++.+.+ .+.+||+|-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~-------~G~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSK-------VRSSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT-------SSSCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHH-------CCCeEEEEE
Confidence 455699999999988777766543 456777763
No 463
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=30.26 E-value=26 Score=39.40 Aligned_cols=19 Identities=47% Similarity=0.522 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~l 512 (1134)
...+|+.+++|+|||.++-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4679999999999997654
No 464
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=30.26 E-value=1.3e+02 Score=33.60 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=9.0
Q ss_pred EEEEcchhhhh
Q 047890 606 LLVLDEADRML 616 (1134)
Q Consensus 606 lVVIDEAHrll 616 (1134)
+||+||+|...
T Consensus 182 ~li~D~~~~~~ 192 (398)
T 1gc0_A 182 TVVVDNTYCTP 192 (398)
T ss_dssp EEEEECTTTHH
T ss_pred EEEEECCCccc
Confidence 79999999743
No 465
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=30.26 E-value=31 Score=33.43 Aligned_cols=17 Identities=12% Similarity=-0.218 Sum_probs=14.0
Q ss_pred CEEEEccCCCchhHHHH
Q 047890 496 DIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~l 512 (1134)
.++|.++.|||||.++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999998654
No 466
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=30.17 E-value=31 Score=39.35 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 486 QTWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 486 eaI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
..|..+++|.++ +.-+.||||||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 345566788764 34599999999763
No 467
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=30.14 E-value=51 Score=37.25 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCCchhHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ 511 (1134)
.+..++|+++||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3446788999999999763
No 468
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=30.12 E-value=32 Score=36.90 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=18.8
Q ss_pred HHcCCCEEEEccCCCchhHHHHH
Q 047890 491 ALQGRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla~ll 513 (1134)
.+.+..++|.+++|+|||.++-+
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHH
Confidence 34588999999999999987543
No 469
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=30.08 E-value=30 Score=39.19 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 486 QTWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 486 eaI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
..|..+++|.++ +.-+.||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 346667788774 34499999999874
No 470
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=29.85 E-value=31 Score=39.43 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 486 QTWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 486 eaI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
..|..++.|.++ +.-+.||||||.+.
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 345567788764 34599999999873
No 471
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=29.81 E-value=41 Score=40.50 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=25.1
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEc
Q 047890 495 RDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLA 536 (1134)
Q Consensus 495 rdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLv 536 (1134)
+-+++.+..|.|||.+++..++.+.+ .+.++|+|.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~-------~G~rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAE-------QGKRVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHH-------CCCcEEEEE
Confidence 34566799999999998877776655 344666644
No 472
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=29.71 E-value=26 Score=39.60 Aligned_cols=18 Identities=39% Similarity=0.263 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHHHH
Q 047890 496 DIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 496 dvLl~ApTGSGKTla~ll 513 (1134)
-++|+++||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 467889999999987543
No 473
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=29.71 E-value=24 Score=35.21 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHHH
Q 047890 493 QGRDIVAIAKTGSGKTLGY 511 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla~ 511 (1134)
.+.-++|.+++|||||..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566888999999999753
No 474
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=29.68 E-value=39 Score=40.17 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=20.5
Q ss_pred HHHHHHH---cCCCEEEEccCCCchhHHHH
Q 047890 486 QTWPIAL---QGRDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 486 eaI~~il---~grdvLl~ApTGSGKTla~l 512 (1134)
.+|..+. .|..++|.++.|+|||..++
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal 193 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAI 193 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHH
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHH
Confidence 3444444 68999999999999997643
No 475
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=29.56 E-value=33 Score=38.73 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..++.|.++ +.-+.||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 45566778764 44599999999873
No 476
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=29.55 E-value=48 Score=42.87 Aligned_cols=71 Identities=25% Similarity=0.281 Sum_probs=48.1
Q ss_pred HHHHHHhcCCEEEEEeCcHHHHHHHHHHhcCCC-cEEEecCCCChhHHHHHHHHHhcCCCCeeeecc-----cceec-cc
Q 047890 694 QILRAQERGSRVIIFCSTKRLCDQLARSIGRNF-GAIAIHGDKSQGERDWVLNQFRSGKSPILVATD-----VAARG-LD 766 (1134)
Q Consensus 694 ~llk~~~~~~kvLVF~nT~~~ae~La~~L~~~~-~v~~LhG~ms~~eR~~il~~FrsGe~~VLVATd-----vl~~G-LD 766 (1134)
.++..+..+.++||.++++..+...++.|.+.+ .+..++|+.+.. .+.+|||+|. ++.++ ..
T Consensus 121 ai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~ 189 (1010)
T 2xgj_A 121 AIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEV 189 (1010)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTT
T ss_pred HHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcch
Confidence 344444567899999999999988888775422 577788887643 3578898884 23333 44
Q ss_pred cCcceEEEe
Q 047890 767 IKDIRVVIN 775 (1134)
Q Consensus 767 Ip~v~~VI~ 775 (1134)
+.++.+||.
T Consensus 190 l~~l~lVVi 198 (1010)
T 2xgj_A 190 MREVAWVIF 198 (1010)
T ss_dssp GGGEEEEEE
T ss_pred hhcCCEEEE
Confidence 566666663
No 477
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=29.55 E-value=1.8e+02 Score=29.90 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=45.7
Q ss_pred HHcCCCCCCHHHHHHHHHHHcC--CC---EEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHH
Q 047890 473 HSAGFSSPTPIQAQTWPIALQG--RD---IVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQD 547 (1134)
Q Consensus 473 ~~~Gf~~prpiQ~eaI~~il~g--rd---vLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~ 547 (1134)
.+.++..+.+.+.+.+..+..- .. .||-.-||+|-+..+++- .. ..+.+++.|=.+.+.+....+
T Consensus 30 ~~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~------~~----~~~~~v~~vD~~~~~~~~a~~ 99 (221)
T 3dr5_A 30 AEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILN------GL----ADNTTLTCIDPESEHQRQAKA 99 (221)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHH------HS----CTTSEEEEECSCHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHH------hC----CCCCEEEEEECCHHHHHHHHH
Confidence 3467888899999998887642 22 566777888877543322 11 123467777777777766666
Q ss_pred HHHHhc
Q 047890 548 EANKFG 553 (1134)
Q Consensus 548 el~kl~ 553 (1134)
.+++.+
T Consensus 100 ~~~~~g 105 (221)
T 3dr5_A 100 LFREAG 105 (221)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 666543
No 478
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=29.52 E-value=41 Score=35.22 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=21.2
Q ss_pred EEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 047890 499 AIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVL 535 (1134)
Q Consensus 499 l~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVL 535 (1134)
.....|.|||.+++..+..+.+ .+.+||+|
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la~-------~g~~Vlli 37 (260)
T 3q9l_A 8 TSGKGGVGKTTSSAAIATGLAQ-------KGKKTVVI 37 (260)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHH-------TTCCEEEE
T ss_pred ECCCCCCcHHHHHHHHHHHHHh-------CCCcEEEE
Confidence 3478899999998877766554 34466665
No 479
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=29.51 E-value=32 Score=38.58 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 486 QTWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 486 eaI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
..|..++.|.++ +.-+.||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 466778888774 44599999999774
No 480
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=29.50 E-value=1.8e+02 Score=33.42 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=37.4
Q ss_pred CCCEEEEEcccHHHHHHHHH-HHHHhccCCCCceEEecCCCCCchhHHhhcCCCc-EEEeCh----------HHHHHHHH
Q 047890 528 NGPTVLVLAPTRELATQIQD-EANKFGRSSRLSCTCLYGGAPKGPQLRELDQGAD-IVVATP----------GRLNDILE 595 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~-el~kl~~~~~i~v~~l~GG~~~~~~l~~l~~~~d-IIVaTP----------erL~~lL~ 595 (1134)
.+..||+..|+-.-...... .+..+ ++.+..+... +.+.....+...+. |++.|| +.|.++.+
T Consensus 120 ~Gd~Vi~~~~~y~~~~~~~~~~~~~~----G~~~~~v~~~-d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~ 194 (430)
T 3ri6_A 120 AGDSVVTTDRLFGHTLSLFQKTLPSF----GIEVRFVDVM-DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVH 194 (430)
T ss_dssp TTCEEEEETTCCHHHHHHHHTHHHHT----TCEEEEECTT-CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CCCEEEEcCCCchhHHHHHHHHHHHc----CCEEEEeCCC-CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence 45678877776433333222 33433 4455444322 22222233333333 445555 34444444
Q ss_pred hcccCCCCeEEEEEcchhhh
Q 047890 596 MKKIDFGQVSLLVLDEADRM 615 (1134)
Q Consensus 596 ~~~l~l~~l~lVVIDEAHrl 615 (1134)
...+ +||+||++..
T Consensus 195 ~~g~------~livD~a~~~ 208 (430)
T 3ri6_A 195 AKGI------PLVVDTTMTP 208 (430)
T ss_dssp TTTC------CEEEECTTSC
T ss_pred HcCC------EEEEECCCcc
Confidence 3332 6999999963
No 481
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=29.48 E-value=33 Score=39.75 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..++.|.++ +.-+.||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 45566788764 44599999999874
No 482
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=29.41 E-value=1.1e+02 Score=34.28 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=9.2
Q ss_pred EEEEcchhhhh
Q 047890 606 LLVLDEADRML 616 (1134)
Q Consensus 606 lVVIDEAHrll 616 (1134)
+||+||+|...
T Consensus 174 ~livD~a~~~~ 184 (393)
T 1n8p_A 174 ILVVDNTFLSP 184 (393)
T ss_dssp EEEEECTTTHH
T ss_pred EEEEeCCcccc
Confidence 79999999744
No 483
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=29.38 E-value=29 Score=40.15 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=14.5
Q ss_pred EEEEccCCCchhHHHHHH
Q 047890 497 IVAIAKTGSGKTLGYLIP 514 (1134)
Q Consensus 497 vLl~ApTGSGKTla~llp 514 (1134)
++|.+|||+|||..+...
T Consensus 5 i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEECSSSSHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHH
Confidence 678899999999875543
No 484
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=29.34 E-value=32 Score=38.94 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..++.|.++ +.-+.||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 45566788764 34599999999874
No 485
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=29.21 E-value=33 Score=38.87 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=18.1
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..++.|.++ +.-+.||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 44556788764 34599999999873
No 486
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=29.00 E-value=32 Score=35.66 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=16.0
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 047890 491 ALQGRDIVAIAKTGSGKTLG 510 (1134)
Q Consensus 491 il~grdvLl~ApTGSGKTla 510 (1134)
+..++-+.|++|+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 35678899999999999975
No 487
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=28.96 E-value=5.7e+02 Score=27.46 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCEEEEEeCcHHHHHHHHHHhc
Q 047890 689 ERRLQQILRAQERGSRVIIFCSTKRLCDQLARSIG 723 (1134)
Q Consensus 689 ~~~L~~llk~~~~~~kvLVF~nT~~~ae~La~~L~ 723 (1134)
...+..+|... .....|||.+-..+.-+.+.|.
T Consensus 193 ~~~~~~~L~~~--~~~~aI~~~~d~~a~g~~~al~ 225 (350)
T 3h75_A 193 YRQAQQLLKRY--PKTQLVWSANDEMALGAMQAAR 225 (350)
T ss_dssp HHHHHHHHHHC--TTEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcCEEEECChHHHHHHHHHHH
Confidence 34455555442 3567888988877777766663
No 488
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=28.91 E-value=37 Score=38.33 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=18.1
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..+++|.++ +.-+.||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 45566778764 34599999999873
No 489
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=28.88 E-value=31 Score=39.39 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCE--EEEccCCCchhHH
Q 047890 486 QTWPIALQGRDI--VAIAKTGSGKTLG 510 (1134)
Q Consensus 486 eaI~~il~grdv--Ll~ApTGSGKTla 510 (1134)
..|..++.|.++ +.-+.||||||.+
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCccee
Confidence 345556778764 3459999999976
No 490
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=28.58 E-value=30 Score=39.30 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=18.6
Q ss_pred HHHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 486 QTWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 486 eaI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
..|..++.|.++ +.-+.||||||.+.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 345566788764 44599999999763
No 491
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=28.51 E-value=30 Score=35.84 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 047890 493 QGRDIVAIAKTGSGKTLG 510 (1134)
Q Consensus 493 ~grdvLl~ApTGSGKTla 510 (1134)
.++-++|++|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 567788999999999975
No 492
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=28.51 E-value=22 Score=35.21 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHHHH
Q 047890 494 GRDIVAIAKTGSGKTLGYLI 513 (1134)
Q Consensus 494 grdvLl~ApTGSGKTla~ll 513 (1134)
+..+++.++.|||||.++-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678899999999987543
No 493
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=28.51 E-value=30 Score=36.40 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=19.8
Q ss_pred HHHHHHHHcC----CCEEEEccCCCchhHHHH
Q 047890 485 AQTWPIALQG----RDIVAIAKTGSGKTLGYL 512 (1134)
Q Consensus 485 ~eaI~~il~g----rdvLl~ApTGSGKTla~l 512 (1134)
..++..++.+ +.+|+.+|.|+|||..++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 4445555554 357889999999997654
No 494
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=28.42 E-value=57 Score=34.45 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=14.6
Q ss_pred EccCCCchhHHHHHHHHHH
Q 047890 500 IAKTGSGKTLGYLIPAFIL 518 (1134)
Q Consensus 500 ~ApTGSGKTla~llpal~~ 518 (1134)
...-|.|||.+++..++.+
T Consensus 34 s~kGGvGKTT~a~~LA~~l 52 (267)
T 3k9g_A 34 SIKGGVGKSTSAIILATLL 52 (267)
T ss_dssp CSSSSSCHHHHHHHHHHHH
T ss_pred eCCCCchHHHHHHHHHHHH
Confidence 3788999999877666554
No 495
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=28.31 E-value=68 Score=41.23 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhccCCCCceEEecCCCCCchh---HHhhcCC---CcEEEeChHHHHHHHHhcccCC
Q 047890 528 NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQ---LRELDQG---ADIVVATPGRLNDILEMKKIDF 601 (1134)
Q Consensus 528 ~g~kvLVLvPTreLa~Q~~~el~kl~~~~~i~v~~l~GG~~~~~~---l~~l~~~---~dIIVaTPerL~~lL~~~~l~l 601 (1134)
.+.++||+|.++.-++.+.+.|.+. .++.+..++|+...... +..+..+ +.|+|+| + +-...+++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-----~-v~~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-----E-IGSEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-----C-CTTCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-----c-hhhcCCCc
Confidence 4568999999999999888888752 25788999998765433 3344444 8999999 2 22456788
Q ss_pred CCeEEEEEcchh
Q 047890 602 GQVSLLVLDEAD 613 (1134)
Q Consensus 602 ~~l~lVVIDEAH 613 (1134)
..+++||+-+..
T Consensus 573 ~~~~~VI~~d~p 584 (968)
T 3dmq_A 573 QFASHMVMFDLP 584 (968)
T ss_dssp TTCCEEECSSCC
T ss_pred ccCcEEEEecCC
Confidence 889999886665
No 496
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=28.13 E-value=32 Score=39.02 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..++.|.++ +.-+.||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 45566788764 44499999999873
No 497
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=27.82 E-value=39 Score=38.45 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..++.|.++ +.-+.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 45566788764 34599999999873
No 498
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=27.82 E-value=33 Score=38.95 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=17.9
Q ss_pred HHHHHHcCCCE--EEEccCCCchhHHH
Q 047890 487 TWPIALQGRDI--VAIAKTGSGKTLGY 511 (1134)
Q Consensus 487 aI~~il~grdv--Ll~ApTGSGKTla~ 511 (1134)
.|..++.|.++ +.-+.||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 34556778764 44599999999773
No 499
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=27.76 E-value=5e+02 Score=26.43 Aligned_cols=70 Identities=4% Similarity=-0.015 Sum_probs=43.2
Q ss_pred HHcCCCCCCHHHHHHHHHHHc--CCCEEEEccCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 047890 473 HSAGFSSPTPIQAQTWPIALQ--GRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPRNGPTVLVLAPTRELATQIQDEAN 550 (1134)
Q Consensus 473 ~~~Gf~~prpiQ~eaI~~il~--grdvLl~ApTGSGKTla~llpal~~L~~~~~~~~~g~kvLVLvPTreLa~Q~~~el~ 550 (1134)
...++....+.+.+.+..++. ....||-.-||+|-...+++. . ....+++.|=...+.+....+.++
T Consensus 48 ~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~------~-----~~~~~v~~vD~~~~~~~~a~~~~~ 116 (232)
T 3ntv_A 48 EVNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFAS------I-----SDDIHVTTIERNETMIQYAKQNLA 116 (232)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHT------T-----CTTCEEEEEECCHHHHHHHHHHHH
T ss_pred HHcCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHH------h-----CCCCEEEEEECCHHHHHHHHHHHH
Confidence 345666677888777766653 445677777999987654321 0 023466666666666666666666
Q ss_pred Hhc
Q 047890 551 KFG 553 (1134)
Q Consensus 551 kl~ 553 (1134)
...
T Consensus 117 ~~~ 119 (232)
T 3ntv_A 117 TYH 119 (232)
T ss_dssp HTT
T ss_pred HcC
Confidence 543
No 500
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=27.75 E-value=35 Score=39.91 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEE--ccCCCchhHHHH
Q 047890 485 AQTWPIALQGRDIVAI--AKTGSGKTLGYL 512 (1134)
Q Consensus 485 ~eaI~~il~grdvLl~--ApTGSGKTla~l 512 (1134)
...|..++.|.++.|. +.||||||.+.+
T Consensus 126 ~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 126 EEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred hhHHHHhhcCCceEEEEeCCCCCCCCEEee
Done!