BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047891
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/447 (50%), Positives = 302/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNFTC+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/447 (50%), Positives = 302/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNFTC+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/447 (50%), Positives = 302/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNFTC+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 302/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNF+C+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFSCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 302/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP G+LRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGQLRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNFTC+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 302/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNFTC+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AG+NAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGQNALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/447 (50%), Positives = 301/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNFTC+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 301/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNF C+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFVCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 301/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNF C+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFACLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 301/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H IL FTC+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILTFTCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 301/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GV VD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L+Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNFTC+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 300/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FP IGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPRIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNFTC+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 466 bits (1200), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/442 (50%), Positives = 298/442 (67%), Gaps = 11/442 (2%)
Query: 83 NHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPL 142
N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WWG++E GP
Sbjct: 2 NMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPK 61
Query: 143 NYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTD 202
Y+W Y L Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D+ YT+
Sbjct: 62 QYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTN 121
Query: 203 KSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVGLGPCG 261
+SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VGLGP G
Sbjct: 122 RSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 181
Query: 262 ELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQFP 321
ELRYP+YP+S G W+FP IGEFQCYDKY++A KA+ +G+ +W P D+G+YN P
Sbjct: 182 ELRYPSYPQSQG-WEFPRIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVP 238
Query: 322 EDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWH 381
E TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+GIHW
Sbjct: 239 ESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWW 298
Query: 382 YRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGL 441
Y+ +HAAELTAGYYN RDGY PIARML++H ILNFTC+EMRD+EQP +A P+ L
Sbjct: 299 YKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQEL 358
Query: 442 VRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--TYLRMN 494
V+QV + +AGENAL RYDA AY Q++ + N LS F TYLR++
Sbjct: 359 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLS 418
Query: 495 KKLFMSDNWRNLVEFVQRMSSE 516
L N+ +FV +M ++
Sbjct: 419 DDLLQKSNFNIFKKFVLKMHAD 440
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 465 bits (1197), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/447 (50%), Positives = 300/447 (67%), Gaps = 11/447 (2%)
Query: 78 ASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137
A+ N N VPV+VMLPL ++ P + L+ L++AGV+GVMVD WG++E
Sbjct: 1 ATSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIE 60
Query: 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD 197
GP Y+W Y L Q+VQ+ GL LQ +MSFHQCGGNVGD IP+P WVL+ N D
Sbjct: 61 LKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHD 120
Query: 198 LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVG 256
+ YT++SG RN EY+++G D P+ GRT I++YSDYM+SFRE D+L ++ +I+VG
Sbjct: 121 IFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVG 180
Query: 257 LGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQ 316
LGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A KA+ +G+ +W P D+G+
Sbjct: 181 LGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGK 237
Query: 317 YNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376
YN PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL A + F G KL+ KV+
Sbjct: 238 YNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVS 297
Query: 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANC 436
GIHW Y+ +HAAELTAGYYN RDGY PIARML++H ILNFTC+EMRD+EQP +A
Sbjct: 298 GIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKS 357
Query: 437 SPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG-----LSAF--T 489
P+ LV+QV + +AGENAL RYDA AY Q++ + N LS F T
Sbjct: 358 GPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVT 417
Query: 490 YLRMNKKLFMSDNWRNLVEFVQRMSSE 516
YLR++ L N+ +FV +M ++
Sbjct: 418 YLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/448 (52%), Positives = 300/448 (66%), Gaps = 13/448 (2%)
Query: 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW 146
N V V+VMLPLD +S + K + A L L AGV+GVMVD WWGLVE GP Y+W
Sbjct: 4 NYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDW 63
Query: 147 EGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGR 206
Y +L ++VQK GLKLQ +MSFHQCGGNVGD+ IP+P WV + +++PD+ YTD G
Sbjct: 64 SAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGT 123
Query: 207 RNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVGLGPCGELRY 265
RN EY++LG D PL GR+ +Q+Y+DYM SFRE +D+L V+ +I+VGLGP GELRY
Sbjct: 124 RNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGELRY 183
Query: 266 PAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQFPEDTG 325
P+YP+S+G W FPGIGEF CYDKY++A KA+A A G+ +W P+D+GQYN PE T
Sbjct: 184 PSYPQSHG-WSFPGIGEFICYDKYLQADFKAAAAAVGHPEW--EFPNDAGQYNDTPERTQ 240
Query: 326 FFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSR 385
FFR +GT+ SE GRFF+ WYS LI+HGDRIL A ++F G +L+ K+AG+HW Y+
Sbjct: 241 FFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWWYKVP 300
Query: 386 SHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQV 445
SHAAELTAGYYN RDGY IARML +H +NFTC EMRD+EQP +A +PE LV+QV
Sbjct: 301 SHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQPPDAMSAPEELVQQV 360
Query: 446 KMATRTAGVELAGENALERYDADAYAQVLATSNLDAGN-------GLSAFTYLRMNKKLF 498
A G+ ++ ENAL RYD AY +L + N L FTYLR++ +L
Sbjct: 361 LSAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLV 420
Query: 499 MSDNWRNLVEFVQRMSSEGRRPRLPEWD 526
N+ N FV RM + PR P D
Sbjct: 421 EGQNYVNFKTFVDRMHA--NLPRDPYVD 446
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/448 (52%), Positives = 297/448 (66%), Gaps = 13/448 (2%)
Query: 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW 146
N V V+VMLPLD +S + K + A L L AGV+GVMVD WWGLVE GP Y+W
Sbjct: 8 NYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDW 67
Query: 147 EGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGR 206
Y +L ++VQK GLKLQ +MSFHQCGGNVGD+ IP+P WV + +++PD+ YTD G
Sbjct: 68 SAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGT 127
Query: 207 RNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL-GDVVQEIQVGLGPCGELRY 265
RN EY++LG D PL GR+ +Q+Y+DYM SFRE +++L V+ +I+VGLGP GE+RY
Sbjct: 128 RNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRY 187
Query: 266 PAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQFPEDTG 325
P+YP+S+G W FPGIGEF CYDKY++A KA+A A G+ +W P+D GQYN PE T
Sbjct: 188 PSYPQSHG-WSFPGIGEFICYDKYLQADFKAAAAAVGHPEW--EFPNDVGQYNDTPERTQ 244
Query: 326 FFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSR 385
FFR +GT+ SE GRFF+ WYS LI+HGDRIL A ++F G +L+ K++GIHW Y+
Sbjct: 245 FFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVP 304
Query: 386 SHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQV 445
SHAAELTAGYYN RDGY IARML +H +NFTC EMRD+EQ A +PE LV+QV
Sbjct: 305 SHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQV 364
Query: 446 KMATRTAGVELAGENALERYDADAYAQVLATSNLDAGN-------GLSAFTYLRMNKKLF 498
A G+ +A ENAL RYD AY +L + N L FTYLR++ +L
Sbjct: 365 LSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLV 424
Query: 499 MSDNWRNLVEFVQRMSSEGRRPRLPEWD 526
N+ N FV RM + PR P D
Sbjct: 425 EGQNYANFKTFVDRMHA--NLPRDPYVD 450
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 216/439 (49%), Positives = 293/439 (66%), Gaps = 12/439 (2%)
Query: 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW 146
N V ++VMLPL ++ + L +K+ G +GVMVD WWG++E GP Y+W
Sbjct: 11 NYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDW 70
Query: 147 EGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGR 206
Y EL Q+V+K GLK+Q +MSFHQCGGNVGD+ IP+P W+L+ KNPD+ YT+++G
Sbjct: 71 SAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGN 130
Query: 207 RNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL--GDVVQEIQVGLGPCGELR 264
RN EY+SLG D L +GRT +++Y D+M SFR+ D+L GD+V +I+VG G GELR
Sbjct: 131 RNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIV-DIEVGCGAAGELR 189
Query: 265 YPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQFPEDT 324
YP+YPE+ G W FPGIGEFQCYDKYM A K + + +GN DW G +G YN P+ T
Sbjct: 190 YPSYPETQG-WVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPG-KGAGTYNDTPDKT 247
Query: 325 GFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRS 384
FFR +GT+ ++ G+FF+ WYS KLI HGD++L A ++F G ++ KV+GIHW Y
Sbjct: 248 EFFRPNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNH 307
Query: 385 RSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQ 444
SHAAELTAG+YN RDGY PIARMLA+H LNFTC+EMRD+EQP A +P+ LV+Q
Sbjct: 308 VSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQ 367
Query: 445 VKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGN-------GLSAFTYLRMNKKL 497
V + +++AGENAL RYDA AY Q+L + N +S TYLR++ L
Sbjct: 368 VLSSGWKEYIDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGLTYLRLSDDL 427
Query: 498 FMSDNWRNLVEFVQRMSSE 516
+DN+ +FV++M ++
Sbjct: 428 LQTDNFELFKKFVKKMHAD 446
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 130/379 (34%), Positives = 186/379 (49%), Gaps = 35/379 (9%)
Query: 93 VMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAEL 152
VM PL +++ G K L LK+ GV + D WWG VE G ++W Y
Sbjct: 10 VMGPLAKINDWGSFKK------QLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTY 63
Query: 153 IQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYI 212
V++ GLK ++S H+CGGNVGD C IPLP W+ + S + ++ + D+SG N E +
Sbjct: 64 ANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDESGYANSEAL 122
Query: 213 SLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGPCGELRYPAYPESN 272
S PL G + Y + SF E F Y ++ +I + GP GELRYP+Y +
Sbjct: 123 S------PLWSGTG--KQYDELYASFAENFAGYK-SIIPKIYLSGGPSGELRYPSYYPAA 173
Query: 273 GTWKFPGIGEFQCYDKYMRASLK-ASAEASGNED-----WGRSGPHDSGQYNQFPEDTGF 326
G W +PG G+FQ Y + + + + A + G+ D WG S Q N P D
Sbjct: 174 G-WSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINAAWGTKLTSLS-QINP-PTDGDG 230
Query: 327 FRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGT-GSKLSGKVAGIHWHYRSR 385
F +G +NS YG+ F+ WY L +H I AAA + F G ++ K++G+HW +
Sbjct: 231 FYTNGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNNP 290
Query: 386 S--HAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVR 443
+ H E GYY+ Y + + + L FTC+EM D+ N + P LV
Sbjct: 291 AMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSL-PSTLVD 343
Query: 444 QVKMATRTAGVELAGENAL 462
V GV L GENAL
Sbjct: 344 TVSSIANAKGVRLNGENAL 362
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 193/417 (46%), Gaps = 37/417 (8%)
Query: 92 FVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAE 151
++M PL + + L K G +MVD WWG +EK+G +++
Sbjct: 14 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAIMVDFWWGDMEKNGDQQFDFSYAQR 70
Query: 152 LIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEY 211
Q V+ G+K+ ++S HQCGGNVGD C +P+P WV + S + L + ++G N E
Sbjct: 71 FAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDD-SLYFKSETGTVNKET 129
Query: 212 IS-LGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGPCGELRYPAYPE 270
++ L D I + Y + +F + Y DV+ +I++ GP GELRYP+Y
Sbjct: 130 LNPLASDVIR--------KEYGELYTAFAAAMKPY-KDVIAKIELSGGPAGELRYPSYTT 180
Query: 271 SNGTWKFPGIGEFQCYDKYMRASL------KASAEASGNEDWGRSGPHDSGQYNQFPEDT 324
S+GT +P G+FQ Y ++ ++ K + N+ WG + P D
Sbjct: 181 SDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDG 237
Query: 325 GFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGS-KLSGKVAGIHWHYR 383
F +G + S YG+ ++EWY G L H I A F T + K+AG+HW Y
Sbjct: 238 EQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN 296
Query: 384 SRS--HAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGL 441
+ + H AE AGY + Y + + +NFTC+EM D + P+ L
Sbjct: 297 NPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVNFTCLEMTDKGSYPEYSM-PKTL 349
Query: 442 VRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLSAFTYLRMNKKLF 498
V+ + G+ L GENAL + + Y +V + + + FT LR ++
Sbjct: 350 VQNIATLANEKGIVLNGENALSIGNEEEYKRV---AEMAFNYNFAGFTLLRYQDVMY 403
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 191/417 (45%), Gaps = 37/417 (8%)
Query: 92 FVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAE 151
++M PL + + L K G + VD WWG +EK+G +++
Sbjct: 14 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQR 70
Query: 152 LIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEY 211
Q V+ G+K+ ++S HQCGGNVGD C +P+P WV + S + L + ++G N E
Sbjct: 71 FAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDD-SLYFKSETGTVNKET 129
Query: 212 IS-LGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGPCGELRYPAYPE 270
++ L D I + Y + +F + Y DV+ +I++ GP GELRYP+Y
Sbjct: 130 LNPLASDVIR--------KEYGELYTAFAAAMKPY-KDVIAKIELSGGPAGELRYPSYTT 180
Query: 271 SNGTWKFPGIGEFQCYDKYMRASL------KASAEASGNEDWGRSGPHDSGQYNQFPEDT 324
S+GT +P G+FQ Y ++ ++ K + N+ WG + P D
Sbjct: 181 SDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDG 237
Query: 325 GFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGS-KLSGKVAGIHWHYR 383
F +G + S YG+ ++EWY G L H I A F T + K+AG+HW Y
Sbjct: 238 EQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN 296
Query: 384 SRS--HAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGL 441
+ + H AE AGY + Y + + + FTC+EM D + P+ L
Sbjct: 297 NPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSM-PKTL 349
Query: 442 VRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLSAFTYLRMNKKLF 498
V+ + G+ L GENAL + + Y +V + + + FT LR ++
Sbjct: 350 VQNIATLANEKGIVLNGENALSIGNEEEYKRV---AEMAFNYNFAGFTLLRYQDVMY 403
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 190/417 (45%), Gaps = 37/417 (8%)
Query: 92 FVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAE 151
++M PL + + L K G + VD WWG +EK+G +++
Sbjct: 14 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQR 70
Query: 152 LIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEY 211
Q V+ G+K+ ++S HQCGGNVGD C +P+P WV + S + L + ++G N E
Sbjct: 71 FAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDD-SLYFKSETGTVNKET 129
Query: 212 IS-LGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGPCGELRYPAYPE 270
++ L D I + Y + +F + Y DV+ +I + GP GELRYP+Y
Sbjct: 130 LNPLASDVIR--------KEYGELYTAFAAAMKPY-KDVIAKIYLSGGPAGELRYPSYTT 180
Query: 271 SNGTWKFPGIGEFQCYDKYMRASL------KASAEASGNEDWGRSGPHDSGQYNQFPEDT 324
S+GT +P G+FQ Y ++ ++ K + N+ WG + P D
Sbjct: 181 SDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDG 237
Query: 325 GFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGS-KLSGKVAGIHWHYR 383
F +G + S YG+ ++EWY G L H I A F T + K+AG+HW Y
Sbjct: 238 EQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN 296
Query: 384 SRS--HAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGL 441
+ + H AE AGY + Y + + + FTC+EM D + P+ L
Sbjct: 297 NPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSM-PKTL 349
Query: 442 VRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLSAFTYLRMNKKLF 498
V+ + G+ L GENAL + + Y +V + + + FT LR ++
Sbjct: 350 VQNIATLANEKGIVLNGENALSIGNEEEYKRV---AEMAFNYNFAGFTLLRYQDVMY 403
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 190/417 (45%), Gaps = 37/417 (8%)
Query: 92 FVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAE 151
++M PL + + L K G + VD WWG +EK+G +++
Sbjct: 14 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQR 70
Query: 152 LIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEY 211
Q V+ G+K+ ++S HQCGGNVGD C +P+P WV + S + L + ++G N E
Sbjct: 71 FAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDD-SLYFKSETGTVNKET 129
Query: 212 IS-LGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGPCGELRYPAYPE 270
++ L D I + Y + +F + Y DV+ +I + GP GELRYP+Y
Sbjct: 130 LNPLASDVIR--------KEYGELYTAFAAAMKPY-KDVIAKIFLSGGPAGELRYPSYTT 180
Query: 271 SNGTWKFPGIGEFQCYDKYMRASL------KASAEASGNEDWGRSGPHDSGQYNQFPEDT 324
S+GT +P G+FQ Y ++ ++ K + N+ WG + P D
Sbjct: 181 SDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDG 237
Query: 325 GFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGS-KLSGKVAGIHWHYR 383
F +G + S YG+ ++EWY G L H I A F T + K+AG+HW Y
Sbjct: 238 EQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN 296
Query: 384 SRS--HAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGL 441
+ + H AE AGY + Y + + + FTC+EM D + P+ L
Sbjct: 297 NPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSM-PKTL 349
Query: 442 VRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLSAFTYLRMNKKLF 498
V+ + G+ L GENAL + + Y +V + + + FT LR ++
Sbjct: 350 VQNIATLANEKGIVLNGENALSIGNEEEYKRV---AEMAFNYNFAGFTLLRYQDVMY 403
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 189/417 (45%), Gaps = 37/417 (8%)
Query: 92 FVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAE 151
++M PL + + L K G + VD WWG +EK+G +++
Sbjct: 14 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQR 70
Query: 152 LIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEY 211
Q V+ G+K+ ++S HQCGGNVGD C +P+P WV + S + L + ++G N E
Sbjct: 71 FAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDD-SLYFKSETGTVNKET 129
Query: 212 IS-LGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGPCGELRYPAYPE 270
++ L D I + Y + +F + Y DV+ +I + GP G LRYP+Y
Sbjct: 130 LNPLASDVIR--------KEYGELYTAFAAAMKPY-KDVIAKIYLSGGPAGALRYPSYTT 180
Query: 271 SNGTWKFPGIGEFQCYDKYMRASL------KASAEASGNEDWGRSGPHDSGQYNQFPEDT 324
S+GT +P G+FQ Y ++ ++ K + N+ WG + P D
Sbjct: 181 SDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDG 237
Query: 325 GFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGS-KLSGKVAGIHWHYR 383
F +G + S YG+ ++EWY G L H I A F T + K+AG+HW Y
Sbjct: 238 EQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN 296
Query: 384 SRS--HAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGL 441
+ + H AE AGY + Y + + + FTC+EM D + P+ L
Sbjct: 297 NPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSM-PKTL 349
Query: 442 VRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLSAFTYLRMNKKLF 498
V+ + G+ L GENAL + + Y +V + + + FT LR ++
Sbjct: 350 VQNIATLANEKGIVLNGENALSIGNEEEYKRV---AEMAFNYNFAGFTLLRYQDVMY 403
>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
Endotoxin Cry3bb1 Bacillus Thuringiensis
Length = 589
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 65 IRKSEKREMVHELASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGV 124
+R ++ + EL S +H RN +P F + + L + +A N L+ LK A V
Sbjct: 95 LRSKRSQDRIRELFSQAESHFRNSMPSFAVSKFEVLFLPTY---AQAANTHLLLLKDAQV 151
Query: 125 EGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKH 159
G WG +D E Y +++ Q++
Sbjct: 152 FG----EEWGYSSEDVA-----EFYHRQLKLTQQY 177
>pdb|4I77|L Chain L, Lebrikizumab Fab Bound To Il-13
Length = 218
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 337 YGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 396
YG FM WY K Q ++ A + G + SG +G + S AE A YY
Sbjct: 32 YGNSFMHWYQQKPGQPPKLLIYLASNLESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYY 91
>pdb|1SAZ|A Chain A, Membership In The Askha Superfamily: Enzymological
Properties And Crystal Structure Of Butyrate Kinase 2
From Thermotoga Maritima
Length = 381
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 184 LPPWVLEEIS-KNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERF 242
L PW+ + +S P LV+ + E +L + +LRG + YS+ R +RER+
Sbjct: 312 LVPWITKRVSFIAPVLVFPGSN-----EEKALALSALRVLRGEEKPKNYSEESRRWRERY 366
Query: 243 RDYLGDVVQ 251
YL +++
Sbjct: 367 DSYLDGILR 375
>pdb|1X9J|A Chain A, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|B Chain B, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|C Chain C, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|D Chain D, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|E Chain E, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|F Chain F, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|G Chain G, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|H Chain H, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
Length = 375
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 184 LPPWVLEEIS-KNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERF 242
L PW+ + +S P LV+ + E +L + +LRG + YS+ R +RER+
Sbjct: 312 LVPWITKRVSFIAPVLVFPGSN-----EEKALALSALRVLRGEEKPKNYSEESRRWRERY 366
Query: 243 RDYLGDVVQ 251
YL +++
Sbjct: 367 DSYLDGILR 375
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 147 EGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGR 206
E E+++MV + ++VM+ + GG C V E+ +K+ D+ Y K +
Sbjct: 88 EKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKK 147
Query: 207 RNPEYIS--LGCDTIPLLRGRTPIQVYSD 233
NPE + + D IP++ P+ + D
Sbjct: 148 VNPEILHALIENDYIPVI---APVGIGED 173
>pdb|4G5Z|L Chain L, Crystal Structure Of The Therapeutical Antibody Fragment
Of Canakinumab In Its Unbound State
pdb|4G6J|L Chain L, Crystal Structure Of Human Il-1beta In Complex With The
Therapeutic Antibody Binding Fragment Of Canakinumab
Length = 212
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 342 MEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 396
+ WY K Q ++ A + F G S+ SG +G + S AE A YY
Sbjct: 33 LHWYQQKPDQSPKLLIKYASQSFSGVPSRFSGSGSGTDFTLTINSLEAEDAAAYY 87
>pdb|1QP1|A Chain A, Kappa Variable Light Chain
pdb|1QP1|B Chain B, Kappa Variable Light Chain
pdb|1QP1|C Chain C, Kappa Variable Light Chain
Length = 107
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 341 FMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRY 400
++ WY KL + + ++ A + G S+ SG +G + + S E A YY +Y
Sbjct: 32 YLIWYQQKLGKAPNLLIYDASTLETGVPSRFSGSGSGTEYTFTISSLQPEDIATYYCQQY 91
Query: 401 RD 402
D
Sbjct: 92 DD 93
>pdb|1BRE|A Chain A, Immunoglobulin Light Chain Protein
pdb|1BRE|B Chain B, Immunoglobulin Light Chain Protein
pdb|1BRE|C Chain C, Immunoglobulin Light Chain Protein
pdb|1BRE|D Chain D, Immunoglobulin Light Chain Protein
pdb|1BRE|E Chain E, Immunoglobulin Light Chain Protein
pdb|1BRE|F Chain F, Immunoglobulin Light Chain Protein
pdb|1B0W|A Chain A, Structural Comparison Of Amyloidogenic Light Chain Dimer
In Two Crystal Forms With Nonamyloidogenic Counterparts
pdb|1B0W|B Chain B, Structural Comparison Of Amyloidogenic Light Chain Dimer
In Two Crystal Forms With Nonamyloidogenic Counterparts
pdb|1B0W|C Chain C, Structural Comparison Of Amyloidogenic Light Chain Dimer
In Two Crystal Forms With Nonamyloidogenic Counterparts
Length = 108
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 341 FMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRY 400
++ WY KL + + ++ A + G S+ SG +G + + S E A YY +Y
Sbjct: 32 YLIWYQQKLGKAPNLLIYDASTLETGVPSRFSGSGSGTEYTFTISSLQPEDIATYYCQQY 91
Query: 401 RD 402
D
Sbjct: 92 DD 93
>pdb|1AFV|L Chain L, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
pdb|1AFV|M Chain M, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
Length = 217
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 337 YGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 396
YG FM W+ K Q ++ AA + G ++ SG +G + E TA Y+
Sbjct: 32 YGISFMNWFQQKPGQPPKLLIYAASNLGSGVPARFSGSGSGTDFSLNIHPMEEEDTAMYF 91
>pdb|2NYY|C Chain C, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|C Chain C, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|E Chain E, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 218
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 337 YGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 396
YG FM+WY K Q ++ A + G ++ SG +G + S E A YY
Sbjct: 32 YGHSFMQWYQQKPGQAPRLLIYRASNLEPGIPARFSGSGSGTDFTLTISSLEPEDFAVYY 91
>pdb|2GCY|A Chain A, Humanized Antibody C25 Fab Fragment
Length = 216
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 337 YGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYY 396
YG FM+WY K Q ++ A + G ++ SG +G + S E A YY
Sbjct: 32 YGHSFMQWYQQKPGQAPRLLIYRASNLEPGIPARFSGSGSGTDFTLTISSLEPEDFAVYY 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,616,124
Number of Sequences: 62578
Number of extensions: 770418
Number of successful extensions: 2029
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1910
Number of HSP's gapped (non-prelim): 35
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)