Query 047891
Match_columns 551
No_of_seqs 145 out of 204
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02803 beta-amylase 100.0 8E-206 2E-210 1615.8 51.1 547 1-551 1-548 (548)
2 PLN00197 beta-amylase; Provisi 100.0 3E-205 6E-210 1615.9 49.4 540 1-550 1-569 (573)
3 PLN02161 beta-amylase 100.0 1E-191 2E-196 1502.5 47.6 431 86-516 89-530 (531)
4 PLN02801 beta-amylase 100.0 2E-190 5E-195 1492.6 45.5 430 86-518 13-450 (517)
5 PLN02905 beta-amylase 100.0 2E-188 4E-193 1499.0 45.8 433 82-518 258-697 (702)
6 PLN02705 beta-amylase 100.0 3E-187 7E-192 1485.6 45.9 445 70-518 226-677 (681)
7 PF01373 Glyco_hydro_14: Glyco 100.0 1E-168 2E-173 1306.1 30.1 393 92-509 1-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 99.8 9.4E-19 2E-23 180.4 10.6 212 108-378 8-238 (374)
9 COG1874 LacA Beta-galactosidas 99.3 5.2E-11 1.1E-15 133.0 16.2 201 108-364 28-249 (673)
10 PF01301 Glyco_hydro_35: Glyco 98.7 7.3E-08 1.6E-12 99.4 9.2 117 108-255 22-146 (319)
11 PLN03059 beta-galactosidase; P 98.4 5.7E-06 1.2E-10 95.0 14.8 149 108-311 57-224 (840)
12 TIGR03356 BGL beta-galactosida 97.8 7.2E-05 1.6E-09 80.3 9.3 111 105-255 49-164 (427)
13 PF00150 Cellulase: Cellulase 97.5 0.00053 1.1E-08 66.3 9.3 60 110-171 21-84 (281)
14 PF00232 Glyco_hydro_1: Glycos 97.3 0.00075 1.6E-08 72.8 8.5 109 106-254 54-168 (455)
15 PRK09852 cryptic 6-phospho-bet 97.2 0.0012 2.6E-08 72.2 9.5 112 105-255 66-183 (474)
16 KOG0496 Beta-galactosidase [Ca 97.2 0.002 4.4E-08 72.6 11.1 101 108-244 47-153 (649)
17 smart00633 Glyco_10 Glycosyl h 97.2 0.012 2.6E-07 58.6 15.3 193 133-428 3-195 (254)
18 PRK15014 6-phospho-beta-glucos 97.0 0.003 6.6E-08 69.1 9.3 113 105-256 64-182 (477)
19 PRK09589 celA 6-phospho-beta-g 96.7 0.0072 1.6E-07 66.2 9.9 112 105-255 62-179 (476)
20 PRK13511 6-phospho-beta-galact 96.5 0.0081 1.8E-07 65.6 8.7 111 105-256 49-164 (469)
21 PLN02814 beta-glucosidase 96.5 0.012 2.5E-07 65.2 9.8 112 105-255 72-188 (504)
22 TIGR01233 lacG 6-phospho-beta- 96.5 0.011 2.4E-07 64.6 9.5 110 105-255 48-162 (467)
23 PLN02998 beta-glucosidase 96.5 0.011 2.4E-07 65.2 9.4 112 105-255 77-193 (497)
24 PLN02849 beta-glucosidase 96.5 0.013 2.8E-07 64.8 9.7 112 105-255 74-190 (503)
25 PF14871 GHL6: Hypothetical gl 96.4 0.066 1.4E-06 49.6 12.4 108 114-244 4-121 (132)
26 COG3693 XynA Beta-1,4-xylanase 96.3 0.033 7.2E-07 59.0 11.3 198 127-429 60-264 (345)
27 PRK09593 arb 6-phospho-beta-gl 96.0 0.028 6.1E-07 61.7 9.3 113 105-256 68-186 (478)
28 PF02638 DUF187: Glycosyl hydr 95.8 0.15 3.3E-06 53.0 13.2 230 106-421 15-258 (311)
29 COG2723 BglB Beta-glucosidase/ 95.2 0.22 4.7E-06 55.0 12.3 148 104-300 53-206 (460)
30 PF00331 Glyco_hydro_10: Glyco 94.8 0.18 3.8E-06 52.5 9.7 212 115-431 26-249 (320)
31 PF14488 DUF4434: Domain of un 94.0 0.51 1.1E-05 45.2 10.2 56 108-165 18-83 (166)
32 PF07745 Glyco_hydro_53: Glyco 93.6 0.5 1.1E-05 50.2 10.4 53 114-171 28-80 (332)
33 PF01229 Glyco_hydro_39: Glyco 93.4 0.11 2.5E-06 56.7 5.3 99 109-244 38-147 (486)
34 cd03465 URO-D_like The URO-D _ 90.6 1.7 3.7E-05 44.2 9.7 118 112-243 170-298 (330)
35 TIGR01093 aroD 3-dehydroquinat 88.3 5.3 0.00012 39.5 11.0 124 101-264 68-194 (228)
36 PF01487 DHquinase_I: Type I 3 88.2 7.8 0.00017 37.9 11.9 128 93-263 57-188 (224)
37 PRK02412 aroD 3-dehydroquinate 87.6 7.5 0.00016 39.4 11.8 134 89-263 75-211 (253)
38 cd00465 URO-D_CIMS_like The UR 86.4 1.3 2.8E-05 44.6 5.6 116 110-241 144-273 (306)
39 PF10566 Glyco_hydro_97: Glyco 85.6 1 2.2E-05 46.8 4.4 102 87-215 85-186 (273)
40 KOG0626 Beta-glucosidase, lact 85.6 4.5 9.9E-05 45.6 9.6 109 107-254 88-203 (524)
41 PRK11572 copper homeostasis pr 84.9 3.2 6.9E-05 42.8 7.5 72 88-170 51-125 (248)
42 PF03659 Glyco_hydro_71: Glyco 83.9 2.8 6.2E-05 45.3 7.0 54 108-170 15-68 (386)
43 cd00502 DHQase_I Type I 3-dehy 83.8 20 0.00044 35.3 12.3 124 98-263 63-188 (225)
44 COG2730 BglC Endoglucanase [Ca 83.0 6.3 0.00014 42.5 9.2 104 113-255 76-187 (407)
45 PF03932 CutC: CutC family; I 82.8 2.2 4.7E-05 42.5 5.2 66 87-163 49-117 (201)
46 PRK01060 endonuclease IV; Prov 82.1 3.5 7.7E-05 40.9 6.5 58 94-163 1-63 (281)
47 TIGR01463 mtaA_cmuA methyltran 81.5 2.7 5.8E-05 43.5 5.6 58 113-174 183-243 (340)
48 cd06592 GH31_glucosidase_KIAA1 81.2 8.6 0.00019 39.8 9.1 83 107-205 27-116 (303)
49 PF00128 Alpha-amylase: Alpha 80.9 3 6.5E-05 40.5 5.3 64 108-174 2-80 (316)
50 cd03311 CIMS_C_terminal_like C 79.9 7.9 0.00017 40.0 8.3 95 110-206 155-252 (332)
51 PRK13111 trpA tryptophan synth 78.5 10 0.00022 38.9 8.5 89 87-206 88-177 (258)
52 cd03308 CmuA_CmuC_like CmuA_Cm 77.9 3.8 8.3E-05 43.6 5.5 80 88-174 172-278 (378)
53 PLN02229 alpha-galactosidase 76.7 4.7 0.0001 44.5 5.8 70 108-178 78-161 (427)
54 PLN02361 alpha-amylase 76.5 8.9 0.00019 41.8 7.8 67 107-176 26-106 (401)
55 CHL00200 trpA tryptophan synth 76.5 31 0.00066 35.6 11.3 92 87-209 90-182 (263)
56 cd06593 GH31_xylosidase_YicI Y 76.2 17 0.00038 37.2 9.5 88 106-207 20-114 (308)
57 smart00642 Aamy Alpha-amylase 76.1 14 0.00031 35.1 8.3 69 106-174 15-97 (166)
58 PF01261 AP_endonuc_2: Xylose 74.7 3.5 7.6E-05 37.9 3.7 46 116-166 1-46 (213)
59 PF00290 Trp_syntA: Tryptophan 74.7 22 0.00048 36.7 9.8 110 87-242 86-197 (259)
60 PHA00442 host recBCD nuclease 74.1 3.2 7E-05 34.0 2.8 27 114-159 30-56 (59)
61 PRK13209 L-xylulose 5-phosphat 73.5 7.2 0.00016 38.8 5.8 67 95-166 8-76 (283)
62 TIGR00542 hxl6Piso_put hexulos 73.4 7.1 0.00015 39.0 5.7 55 109-166 15-71 (279)
63 PRK08195 4-hyroxy-2-oxovalerat 72.5 29 0.00064 36.8 10.3 90 114-242 92-186 (337)
64 cd03307 Mta_CmuA_like MtaA_Cmu 71.2 7.9 0.00017 39.9 5.7 55 114-174 175-232 (326)
65 PLN02591 tryptophan synthase 71.0 24 0.00053 36.2 9.0 89 87-206 77-166 (250)
66 TIGR03217 4OH_2_O_val_ald 4-hy 70.5 35 0.00076 36.2 10.3 92 113-243 90-186 (333)
67 PF02065 Melibiase: Melibiase; 70.0 11 0.00023 41.1 6.6 79 108-190 56-145 (394)
68 PRK09856 fructoselysine 3-epim 68.8 13 0.00028 36.8 6.4 51 111-168 14-68 (275)
69 TIGR01515 branching_enzym alph 68.5 11 0.00025 42.8 6.6 55 109-169 155-228 (613)
70 TIGR02402 trehalose_TreZ malto 68.1 12 0.00025 42.2 6.5 61 108-173 109-186 (542)
71 COG1649 Uncharacterized protei 67.6 1.1E+02 0.0023 34.2 13.5 155 104-296 58-227 (418)
72 PF08821 CGGC: CGGC domain; I 67.5 19 0.0004 32.7 6.5 56 109-170 51-107 (107)
73 COG3867 Arabinogalactan endo-1 67.1 14 0.0003 39.8 6.4 57 113-171 66-126 (403)
74 TIGR00433 bioB biotin syntheta 66.7 15 0.00032 37.0 6.4 55 113-169 123-180 (296)
75 PRK10658 putative alpha-glucos 66.5 47 0.001 38.7 11.0 87 108-208 281-374 (665)
76 TIGR02104 pulA_typeI pullulana 66.0 44 0.00095 38.1 10.6 64 110-173 164-256 (605)
77 PF01055 Glyco_hydro_31: Glyco 65.9 24 0.00052 37.8 8.1 85 107-207 40-134 (441)
78 TIGR00262 trpA tryptophan synt 65.3 81 0.0018 32.3 11.4 63 88-169 87-149 (256)
79 PRK13210 putative L-xylulose 5 63.8 18 0.00039 35.8 6.3 53 110-166 16-71 (284)
80 PRK06252 methylcobalamin:coenz 63.3 8.8 0.00019 39.6 4.1 56 113-174 183-241 (339)
81 PRK12313 glycogen branching en 61.8 18 0.0004 41.2 6.7 75 89-169 148-242 (633)
82 PLN02808 alpha-galactosidase 61.7 16 0.00034 40.0 5.8 58 108-165 47-115 (386)
83 TIGR00695 uxuA mannonate dehyd 61.4 23 0.00049 39.0 6.9 51 115-169 15-65 (394)
84 TIGR03234 OH-pyruv-isom hydrox 60.4 20 0.00044 35.1 5.9 42 111-164 15-56 (254)
85 cd06565 GH20_GcnA-like Glycosy 59.7 1.6E+02 0.0035 30.7 12.6 131 105-244 12-176 (301)
86 cd03309 CmuC_like CmuC_like. P 59.6 11 0.00025 39.6 4.2 52 119-174 164-222 (321)
87 PRK09989 hypothetical protein; 59.2 24 0.00051 35.0 6.2 42 111-164 16-57 (258)
88 PF01791 DeoC: DeoC/LacD famil 58.8 12 0.00027 36.9 4.1 53 113-166 79-131 (236)
89 PLN02389 biotin synthase 58.4 22 0.00047 38.5 6.2 45 113-163 178-229 (379)
90 PRK12595 bifunctional 3-deoxy- 57.6 43 0.00093 36.1 8.2 74 88-170 117-190 (360)
91 TIGR02403 trehalose_treC alpha 57.3 36 0.00078 38.3 7.9 66 106-173 23-101 (543)
92 cd04724 Tryptophan_synthase_al 56.2 30 0.00065 34.8 6.4 63 88-169 76-138 (242)
93 COG3142 CutC Uncharacterized p 55.5 28 0.0006 36.0 6.0 173 87-299 50-240 (241)
94 PRK09441 cytoplasmic alpha-amy 55.3 33 0.0007 37.7 7.0 67 108-174 20-108 (479)
95 cd07944 DRE_TIM_HOA_like 4-hyd 54.4 58 0.0012 33.4 8.2 77 113-209 85-166 (266)
96 PRK13398 3-deoxy-7-phosphohept 54.3 53 0.0011 34.0 7.9 66 103-170 34-99 (266)
97 cd00717 URO-D Uroporphyrinogen 54.3 22 0.00048 36.8 5.3 74 115-204 182-260 (335)
98 PF13653 GDPD_2: Glycerophosph 54.1 13 0.00027 26.9 2.4 18 113-130 10-27 (30)
99 PRK04302 triosephosphate isome 54.0 31 0.00067 34.0 6.0 47 114-170 76-122 (223)
100 PF01208 URO-D: Uroporphyrinog 53.4 24 0.00052 36.3 5.3 77 114-204 186-265 (343)
101 PRK10150 beta-D-glucuronidase; 52.8 3.9E+02 0.0085 30.3 16.0 45 107-165 310-354 (604)
102 cd06591 GH31_xylosidase_XylS X 52.8 2.5E+02 0.0055 29.3 12.7 87 107-208 21-115 (319)
103 TIGR02102 pullulan_Gpos pullul 52.2 31 0.00066 42.6 6.7 62 108-169 478-577 (1111)
104 PRK09997 hydroxypyruvate isome 52.1 29 0.00063 34.4 5.5 41 111-163 16-56 (258)
105 PF05706 CDKN3: Cyclin-depende 51.6 8.1 0.00018 37.9 1.5 47 109-163 57-103 (168)
106 PRK05222 5-methyltetrahydropte 51.2 78 0.0017 37.5 9.5 125 110-246 581-717 (758)
107 PRK10785 maltodextrin glucosid 51.2 45 0.00098 38.0 7.4 111 108-236 177-312 (598)
108 PLN02692 alpha-galactosidase 51.1 29 0.00063 38.3 5.8 56 108-163 71-137 (412)
109 cd06604 GH31_glucosidase_II_Ma 50.7 90 0.0019 32.8 9.1 85 106-206 20-113 (339)
110 TIGR02456 treS_nterm trehalose 50.7 50 0.0011 37.0 7.6 66 106-174 24-103 (539)
111 PF10566 Glyco_hydro_97: Glyco 50.6 51 0.0011 34.5 7.1 63 108-172 30-96 (273)
112 PRK15452 putative protease; Pr 50.5 23 0.00049 39.3 4.9 39 88-131 59-97 (443)
113 cd02742 GH20_hexosaminidase Be 50.0 2.4E+02 0.0051 29.3 11.9 131 105-245 11-183 (303)
114 TIGR01464 hemE uroporphyrinoge 49.9 30 0.00064 36.0 5.4 74 115-204 185-263 (338)
115 PRK14511 maltooligosyl trehalo 49.8 67 0.0015 38.8 8.8 64 109-173 19-95 (879)
116 cd06599 GH31_glycosidase_Aec37 49.3 1E+02 0.0022 32.3 9.1 86 109-206 28-120 (317)
117 cd01299 Met_dep_hydrolase_A Me 49.0 56 0.0012 33.2 7.1 64 106-173 116-182 (342)
118 PRK07360 FO synthase subunit 2 48.9 17 0.00036 38.9 3.4 53 112-169 162-223 (371)
119 PRK10933 trehalose-6-phosphate 48.9 53 0.0012 37.2 7.5 66 106-173 29-107 (551)
120 cd06602 GH31_MGAM_SI_GAA This 48.2 2E+02 0.0043 30.5 11.2 92 106-208 20-120 (339)
121 cd03174 DRE_TIM_metallolyase D 48.1 58 0.0013 32.0 6.9 101 113-243 77-189 (265)
122 PRK09875 putative hydrolase; P 47.5 73 0.0016 33.4 7.8 67 103-189 27-94 (292)
123 cd07943 DRE_TIM_HOA 4-hydroxy- 47.0 1.6E+02 0.0036 29.7 10.0 91 114-243 89-184 (263)
124 PLN02877 alpha-amylase/limit d 47.0 37 0.0008 41.3 6.2 63 111-173 374-493 (970)
125 PRK00115 hemE uroporphyrinogen 46.9 34 0.00074 35.8 5.3 75 114-204 190-269 (346)
126 PRK03906 mannonate dehydratase 46.1 32 0.00069 37.6 5.1 51 115-169 15-65 (385)
127 PLN00196 alpha-amylase; Provis 45.7 69 0.0015 35.3 7.6 64 108-174 42-119 (428)
128 PRK14706 glycogen branching en 44.3 61 0.0013 37.6 7.2 61 104-169 161-239 (639)
129 TIGR03699 mena_SCO4550 menaqui 44.3 23 0.00049 36.9 3.5 55 113-167 143-201 (340)
130 cd00958 DhnA Class I fructose- 43.8 51 0.0011 32.3 5.7 66 107-178 73-138 (235)
131 TIGR03849 arch_ComA phosphosul 43.6 53 0.0011 33.9 5.9 67 88-167 54-120 (237)
132 TIGR03551 F420_cofH 7,8-dideme 42.8 23 0.0005 37.2 3.3 57 113-169 141-201 (343)
133 PRK04326 methionine synthase; 42.7 46 0.00099 34.5 5.4 78 110-204 161-239 (330)
134 PRK12858 tagatose 1,6-diphosph 42.5 59 0.0013 35.0 6.3 65 110-174 106-170 (340)
135 PF03786 UxuA: D-mannonate deh 42.4 24 0.00053 38.2 3.5 51 115-169 16-67 (351)
136 PRK09505 malS alpha-amylase; R 42.4 66 0.0014 37.7 7.1 62 108-169 228-314 (683)
137 TIGR02631 xylA_Arthro xylose i 42.1 34 0.00074 37.0 4.5 54 108-166 30-87 (382)
138 PRK09936 hypothetical protein; 41.9 53 0.0011 35.0 5.7 54 108-169 36-94 (296)
139 PRK13125 trpA tryptophan synth 41.8 3E+02 0.0064 27.7 10.8 64 88-170 74-137 (244)
140 PRK05402 glycogen branching en 41.7 70 0.0015 37.4 7.2 76 89-169 242-337 (726)
141 PLN02960 alpha-amylase 41.3 86 0.0019 38.0 7.9 57 106-169 412-486 (897)
142 PF01717 Meth_synt_2: Cobalami 40.8 56 0.0012 33.9 5.7 86 110-207 154-245 (324)
143 PRK07094 biotin synthase; Prov 40.7 47 0.001 34.2 5.1 56 113-169 129-187 (323)
144 PF02836 Glyco_hydro_2_C: Glyc 40.5 66 0.0014 32.7 6.1 49 107-169 33-81 (298)
145 PRK08508 biotin synthase; Prov 40.4 37 0.00081 34.8 4.3 47 113-165 102-155 (279)
146 cd06564 GH20_DspB_LnbB-like Gl 40.2 3.1E+02 0.0068 28.7 11.1 132 105-245 12-192 (326)
147 PLN02475 5-methyltetrahydropte 39.5 53 0.0012 38.9 5.9 84 110-204 586-674 (766)
148 PRK08883 ribulose-phosphate 3- 38.9 1.9E+02 0.0042 29.0 9.0 111 107-236 9-127 (220)
149 PF09184 PPP4R2: PPP4R2; Inte 38.6 7.8 0.00017 40.5 -0.9 30 486-515 96-126 (288)
150 TIGR00423 radical SAM domain p 38.1 38 0.00083 35.0 4.0 56 112-167 106-165 (309)
151 PRK00957 methionine synthase; 38.0 1.3E+02 0.0027 31.1 7.7 80 110-207 144-224 (305)
152 COG0159 TrpA Tryptophan syntha 37.5 1.7E+02 0.0036 30.8 8.5 92 85-208 91-184 (265)
153 PF04476 DUF556: Protein of un 37.1 43 0.00094 34.6 4.1 44 116-163 137-183 (235)
154 PF05226 CHASE2: CHASE2 domain 37.0 2.9E+02 0.0063 28.1 10.1 96 108-213 62-163 (310)
155 cd00951 KDGDH 5-dehydro-4-deox 36.3 1.8E+02 0.004 29.9 8.6 113 86-224 67-182 (289)
156 PRK08745 ribulose-phosphate 3- 35.6 2.3E+02 0.005 28.7 9.0 112 107-236 13-131 (223)
157 TIGR02401 trehalose_TreY malto 35.6 1.5E+02 0.0032 35.9 8.6 65 108-173 14-91 (825)
158 PRK08445 hypothetical protein; 35.5 51 0.0011 35.1 4.6 57 113-169 144-204 (348)
159 cd07947 DRE_TIM_Re_CS Clostrid 35.3 2.2E+02 0.0048 29.6 9.0 86 113-209 77-178 (279)
160 TIGR03700 mena_SCO4494 putativ 35.0 44 0.00096 35.3 4.0 58 112-169 149-210 (351)
161 COG1082 IolE Sugar phosphate i 34.9 73 0.0016 31.1 5.2 49 109-164 14-62 (274)
162 COG1312 UxuA D-mannonate dehyd 34.6 66 0.0014 35.1 5.1 51 115-169 15-65 (362)
163 PLN02447 1,4-alpha-glucan-bran 34.5 1.1E+02 0.0023 36.6 7.3 79 88-172 229-326 (758)
164 smart00854 PGA_cap Bacterial c 34.5 91 0.002 30.9 5.9 57 108-171 158-214 (239)
165 cd06600 GH31_MGAM-like This fa 34.2 4.8E+02 0.01 27.3 11.3 83 106-206 20-113 (317)
166 PF01902 ATP_bind_4: ATP-bindi 33.9 63 0.0014 32.6 4.7 68 404-471 123-193 (218)
167 TIGR02090 LEU1_arch isopropylm 33.8 1.2E+02 0.0026 32.5 7.0 85 113-207 74-167 (363)
168 TIGR02103 pullul_strch alpha-1 33.8 60 0.0013 39.3 5.2 25 112-136 288-314 (898)
169 PF02679 ComA: (2R)-phospho-3- 33.5 59 0.0013 33.7 4.4 86 88-190 67-152 (244)
170 cd07939 DRE_TIM_NifV Streptomy 32.9 2.6E+02 0.0056 28.2 8.9 82 113-206 72-164 (259)
171 COG1619 LdcA Uncharacterized p 32.7 1.4E+02 0.003 32.0 7.2 96 90-200 12-107 (313)
172 PRK15108 biotin synthase; Prov 32.5 75 0.0016 33.8 5.2 45 113-163 136-187 (345)
173 PLN02540 methylenetetrahydrofo 32.4 1E+02 0.0022 35.6 6.5 74 110-194 153-234 (565)
174 cd08627 PI-PLCc_gamma1 Catalyt 32.2 40 0.00087 34.6 3.0 47 72-134 7-53 (229)
175 PRK06520 5-methyltetrahydropte 32.2 85 0.0018 33.8 5.6 67 110-177 170-247 (368)
176 TIGR03679 arCOG00187 arCOG0018 31.6 94 0.002 30.9 5.4 68 404-471 124-194 (218)
177 PRK14040 oxaloacetate decarbox 31.2 2E+02 0.0044 33.3 8.6 85 68-169 61-146 (593)
178 smart00518 AP2Ec AP endonuclea 31.1 1.3E+02 0.0029 29.7 6.5 52 110-163 10-61 (273)
179 PRK06256 biotin synthase; Vali 31.0 74 0.0016 33.0 4.8 46 113-164 152-204 (336)
180 PF04187 DUF399: Protein of un 30.9 36 0.00078 33.8 2.4 73 144-244 86-158 (213)
181 PF04909 Amidohydro_2: Amidohy 30.6 1.4E+02 0.003 28.7 6.2 50 109-163 84-133 (273)
182 TIGR01371 met_syn_B12ind 5-met 30.5 1.4E+02 0.0031 35.3 7.4 83 110-202 575-661 (750)
183 PRK02227 hypothetical protein; 30.5 66 0.0014 33.3 4.2 46 114-163 135-183 (238)
184 PRK15108 biotin synthase; Prov 30.4 7E+02 0.015 26.6 12.9 120 108-258 77-196 (345)
185 PRK06233 hypothetical protein; 30.2 1.1E+02 0.0024 32.9 6.1 67 110-177 171-249 (372)
186 PF01261 AP_endonuc_2: Xylose 30.0 57 0.0012 29.9 3.4 60 109-170 70-133 (213)
187 COG0620 MetE Methionine syntha 29.8 1.2E+02 0.0027 32.4 6.2 64 109-178 157-226 (330)
188 cd08592 PI-PLCc_gamma Catalyti 29.7 46 0.00099 34.2 2.9 56 103-161 23-84 (229)
189 TIGR02884 spore_pdaA delta-lac 29.6 1.1E+02 0.0025 30.2 5.6 82 405-496 142-223 (224)
190 PF02126 PTE: Phosphotriestera 29.6 1.2E+02 0.0027 32.0 6.2 63 108-189 36-98 (308)
191 COG2352 Ppc Phosphoenolpyruvat 29.3 50 0.0011 39.7 3.5 67 106-179 532-612 (910)
192 PRK13210 putative L-xylulose 5 29.3 1.1E+02 0.0024 30.3 5.5 59 110-170 94-154 (284)
193 COG4130 Predicted sugar epimer 29.1 1E+02 0.0022 32.2 5.2 70 86-160 94-164 (272)
194 PLN02417 dihydrodipicolinate s 29.1 2.2E+02 0.0047 29.2 7.7 93 87-206 69-164 (280)
195 cd08597 PI-PLCc_PRIP_metazoa C 28.6 1.2E+02 0.0026 31.7 5.8 57 103-162 23-85 (260)
196 cd00019 AP2Ec AP endonuclease 28.5 1.6E+02 0.0035 29.4 6.6 52 110-163 10-62 (279)
197 TIGR01768 GGGP-family geranylg 28.3 4.2E+02 0.0091 27.1 9.4 103 112-261 16-119 (223)
198 PTZ00445 p36-lilke protein; Pr 28.2 1.5E+02 0.0033 30.4 6.3 59 105-163 24-94 (219)
199 PRK12331 oxaloacetate decarbox 28.1 1.5E+02 0.0033 33.0 6.8 51 109-169 95-145 (448)
200 PRK12568 glycogen branching en 28.0 1.6E+02 0.0034 35.1 7.1 59 106-169 265-341 (730)
201 cd03319 L-Ala-DL-Glu_epimerase 28.0 66 0.0014 33.1 3.8 58 104-177 235-293 (316)
202 cd08560 GDPD_EcGlpQ_like_1 Gly 27.7 78 0.0017 34.2 4.4 50 112-165 247-296 (356)
203 cd03310 CIMS_like CIMS - Cobal 27.5 2.3E+02 0.005 28.9 7.6 59 110-174 151-211 (321)
204 PRK12677 xylose isomerase; Pro 27.4 1.4E+02 0.003 32.5 6.2 49 111-164 32-84 (384)
205 PLN02433 uroporphyrinogen deca 27.3 96 0.0021 32.7 4.9 77 114-204 183-262 (345)
206 COG3250 LacZ Beta-galactosidas 27.2 2.2E+02 0.0047 34.3 8.2 46 104-163 315-360 (808)
207 TIGR00677 fadh2_euk methylenet 27.1 1.8E+02 0.0039 30.2 6.8 71 112-194 147-226 (281)
208 cd00945 Aldolase_Class_I Class 27.1 2.1E+02 0.0046 26.2 6.7 26 109-134 64-89 (201)
209 cd07381 MPP_CapA CapA and rela 26.9 1.8E+02 0.0039 28.6 6.4 58 107-171 159-216 (239)
210 smart00481 POLIIIAc DNA polyme 26.9 2E+02 0.0044 22.7 5.7 43 112-165 17-59 (67)
211 PF00682 HMGL-like: HMGL-like 26.8 3.6E+02 0.0079 26.3 8.5 108 108-244 65-181 (237)
212 PRK08673 3-deoxy-7-phosphohept 26.6 1.6E+02 0.0035 31.7 6.5 63 101-170 98-165 (335)
213 TIGR02026 BchE magnesium-proto 26.5 1.8E+02 0.0038 32.4 7.0 51 114-169 288-345 (497)
214 COG1809 (2R)-phospho-3-sulfola 26.4 1.3E+02 0.0028 31.4 5.4 46 110-163 90-135 (258)
215 TIGR03234 OH-pyruv-isom hydrox 26.4 2E+02 0.0043 28.2 6.7 57 110-170 84-144 (254)
216 COG1243 ELP3 Histone acetyltra 26.2 99 0.0021 35.2 4.9 87 111-202 196-294 (515)
217 TIGR03056 bchO_mg_che_rel puta 25.8 2.4E+02 0.0052 26.7 6.9 77 373-454 11-94 (278)
218 PF05378 Hydant_A_N: Hydantoin 25.6 1.5E+02 0.0032 28.7 5.5 45 108-160 132-176 (176)
219 COG2876 AroA 3-deoxy-D-arabino 25.3 1.6E+02 0.0034 31.4 5.9 55 107-161 226-282 (286)
220 TIGR01949 AroFGH_arch predicte 25.1 1.2E+02 0.0025 30.7 4.9 73 88-166 70-142 (258)
221 smart00729 Elp3 Elongator prot 25.1 3.2E+02 0.0068 24.7 7.3 16 145-160 134-149 (216)
222 TIGR02529 EutJ ethanolamine ut 25.0 1.9E+02 0.0041 29.0 6.3 63 94-168 25-96 (239)
223 TIGR03822 AblA_like_2 lysine-2 25.0 3.1E+02 0.0066 28.9 8.1 108 114-246 188-298 (321)
224 TIGR00010 hydrolase, TatD fami 24.8 1.9E+02 0.0041 27.8 6.1 46 112-170 17-62 (252)
225 COG1099 Predicted metal-depend 24.7 56 0.0012 34.0 2.5 56 114-170 15-73 (254)
226 COG1856 Uncharacterized homolo 24.6 1.3E+02 0.0029 31.5 5.1 57 113-170 100-161 (275)
227 COG0646 MetH Methionine syntha 24.5 2E+02 0.0043 31.1 6.5 90 110-259 143-232 (311)
228 cd07948 DRE_TIM_HCS Saccharomy 24.4 1.9E+02 0.0042 29.6 6.4 81 114-206 75-166 (262)
229 TIGR00542 hxl6Piso_put hexulos 24.4 1.6E+02 0.0034 29.6 5.6 59 110-170 94-154 (279)
230 PRK05926 hypothetical protein; 24.3 77 0.0017 34.3 3.6 58 112-169 168-229 (370)
231 PRK11858 aksA trans-homoaconit 24.2 5.6E+02 0.012 27.7 10.0 102 112-242 77-187 (378)
232 PRK08508 biotin synthase; Prov 23.9 2.4E+02 0.0051 29.0 6.9 52 108-165 41-93 (279)
233 PLN03231 putative alpha-galact 23.9 83 0.0018 34.2 3.7 47 117-163 29-102 (357)
234 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.9 2.4E+02 0.0052 29.0 6.9 80 109-206 90-174 (275)
235 cd00530 PTE Phosphotriesterase 23.8 2E+02 0.0042 28.9 6.2 57 106-172 28-84 (293)
236 PF14542 Acetyltransf_CG: GCN5 23.7 18 0.00038 30.5 -1.0 21 149-169 44-64 (78)
237 PF01136 Peptidase_U32: Peptid 23.7 74 0.0016 31.0 3.1 22 110-131 2-23 (233)
238 TIGR00419 tim triosephosphate 23.7 1.7E+02 0.0037 29.3 5.7 45 115-169 73-117 (205)
239 COG2089 SpsE Sialic acid synth 23.7 1.3E+02 0.0028 32.8 5.0 73 87-163 11-106 (347)
240 cd06597 GH31_transferase_CtsY 23.5 4.8E+02 0.01 27.7 9.2 95 106-206 20-139 (340)
241 PF02591 DUF164: Putative zinc 23.4 2.2E+02 0.0048 22.4 5.2 42 159-206 13-54 (56)
242 PRK09997 hydroxypyruvate isome 23.2 2.4E+02 0.0052 27.9 6.6 56 110-170 85-145 (258)
243 cd06413 GH25_muramidase_1 Unch 23.2 2.2E+02 0.0047 27.4 6.1 51 115-172 16-66 (191)
244 PRK13397 3-deoxy-7-phosphohept 23.1 2.8E+02 0.0061 28.9 7.2 65 104-170 23-87 (250)
245 PRK03705 glycogen debranching 23.0 1.1E+02 0.0025 35.6 4.9 51 115-169 184-264 (658)
246 PRK09121 5-methyltetrahydropte 22.9 1.4E+02 0.0031 31.7 5.2 60 110-177 156-216 (339)
247 cd07382 MPP_DR1281 Deinococcus 22.9 2.8E+02 0.006 28.7 7.1 52 107-172 125-176 (255)
248 cd08212 RuBisCO_large_I Ribulo 22.8 1.6E+02 0.0036 33.0 5.8 52 108-170 224-275 (450)
249 PRK10426 alpha-glucosidase; Pr 22.8 4.2E+02 0.0091 30.9 9.3 87 109-207 220-317 (635)
250 TIGR02512 Fe_only_hydrog hydro 22.8 3.2E+02 0.0069 29.4 7.8 86 110-238 110-197 (374)
251 TIGR03586 PseI pseudaminic aci 22.4 2.5E+02 0.0053 30.2 6.8 70 90-163 1-93 (327)
252 TIGR00289 conserved hypothetic 22.3 1.6E+02 0.0035 29.8 5.3 66 406-472 125-193 (222)
253 PF14871 GHL6: Hypothetical gl 22.3 3.2E+02 0.0069 25.5 6.8 63 406-471 4-74 (132)
254 PRK14507 putative bifunctional 22.1 3.6E+02 0.0078 35.3 9.1 65 107-172 755-832 (1693)
255 PF13380 CoA_binding_2: CoA bi 22.0 1.8E+02 0.0038 26.1 4.9 44 106-163 62-105 (116)
256 PF03799 FtsQ: Cell division p 21.8 1.6E+02 0.0035 24.9 4.5 57 197-255 9-66 (117)
257 COG2019 AdkA Archaeal adenylat 21.8 6E+02 0.013 25.7 8.8 111 127-253 39-168 (189)
258 COG0036 Rpe Pentose-5-phosphat 21.8 3.8E+02 0.0081 27.6 7.6 144 107-301 13-164 (220)
259 cd02809 alpha_hydroxyacid_oxid 21.7 9E+02 0.02 25.0 10.7 129 108-246 127-286 (299)
260 PRK13655 phosphoenolpyruvate c 21.7 1.4E+02 0.003 34.0 5.1 56 145-205 216-274 (494)
261 TIGR02351 thiH thiazole biosyn 21.6 2E+02 0.0044 30.7 6.1 46 113-163 162-218 (366)
262 COG0407 HemE Uroporphyrinogen- 21.5 1.8E+02 0.0039 31.7 5.6 58 114-174 193-251 (352)
263 PLN02784 alpha-amylase 21.4 2.5E+02 0.0055 34.2 7.3 63 109-174 520-596 (894)
264 cd06589 GH31 The enzymes of gl 21.4 2.6E+02 0.0056 28.3 6.5 71 106-193 20-99 (265)
265 TIGR02100 glgX_debranch glycog 21.3 1.7E+02 0.0036 34.4 5.7 64 110-173 182-272 (688)
266 TIGR03471 HpnJ hopanoid biosyn 21.2 2.5E+02 0.0055 30.8 6.8 52 113-169 287-345 (472)
267 PRK04175 rpl7ae 50S ribosomal 21.2 2.4E+02 0.0053 25.9 5.7 45 401-456 32-76 (122)
268 cd07491 Peptidases_S8_7 Peptid 21.2 6.1E+02 0.013 25.5 9.1 85 94-187 68-159 (247)
269 cd08629 PI-PLCc_delta1 Catalyt 21.2 2.3E+02 0.0049 29.8 6.1 65 103-170 23-98 (258)
270 COG2342 Predicted extracellula 21.2 1.7E+02 0.0037 31.3 5.2 66 110-178 126-199 (300)
271 cd08625 PI-PLCc_beta3 Catalyti 21.1 2.2E+02 0.0048 29.7 6.0 83 72-170 7-100 (258)
272 PRK14705 glycogen branching en 21.1 1.8E+02 0.004 36.5 6.3 54 109-169 764-835 (1224)
273 cd08631 PI-PLCc_delta4 Catalyt 21.0 2.3E+02 0.0051 29.7 6.2 57 103-162 23-85 (258)
274 cd06603 GH31_GANC_GANAB_alpha 20.9 9.6E+02 0.021 25.3 10.8 88 106-207 20-114 (339)
275 cd06568 GH20_SpHex_like A subg 20.8 1E+03 0.022 25.3 12.0 129 105-245 13-187 (329)
276 cd08594 PI-PLCc_eta Catalytic 20.8 2.4E+02 0.0053 29.1 6.1 66 103-171 23-99 (227)
277 TIGR00539 hemN_rel putative ox 20.6 2.2E+02 0.0048 30.1 6.1 52 113-169 100-159 (360)
278 cd02801 DUS_like_FMN Dihydrour 20.5 1.9E+02 0.0042 27.8 5.2 63 87-159 53-121 (231)
279 cd00959 DeoC 2-deoxyribose-5-p 20.4 2.4E+02 0.0052 27.5 5.9 58 109-169 68-125 (203)
280 cd08593 PI-PLCc_delta Catalyti 20.4 2.5E+02 0.0054 29.4 6.2 57 103-162 23-85 (257)
281 cd04733 OYE_like_2_FMN Old yel 20.2 3.9E+02 0.0084 28.1 7.7 79 92-174 17-107 (338)
282 PRK13575 3-dehydroquinate dehy 20.2 4.1E+02 0.0089 27.1 7.7 59 102-171 74-134 (238)
283 COG1060 ThiH Thiamine biosynth 20.2 1.5E+02 0.0032 32.3 4.8 59 111-169 159-221 (370)
284 PF14587 Glyco_hydr_30_2: O-Gl 20.2 4.3E+02 0.0093 29.3 8.2 82 139-253 93-177 (384)
285 TIGR00290 MJ0570_dom MJ0570-re 20.0 1.9E+02 0.0042 29.4 5.2 69 404-472 123-194 (223)
No 1
>PLN02803 beta-amylase
Probab=100.00 E-value=8.4e-206 Score=1615.79 Aligned_cols=547 Identities=80% Similarity=1.338 Sum_probs=523.1
Q ss_pred CcccccCcccccccCCCCccCCCCCCCCCceeccccCCcc-ccccccchhhhhcccCCCCcccccccccchhhhhhccCC
Q 047891 1 MALTLRSSTSFINLNDTKTIKTPDEFSSPTTCFAKIKPSR-RLRAKSSMQEAQLCRDKHSTMGGIIRKSEKREMVHELAS 79 (551)
Q Consensus 1 m~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (551)
||+++++|++|+++++++..++.+..+. .+.|+..+|++ |++.+++++++..+.+..++.++ +.....++.|....
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 77 (548)
T PLN02803 1 MALTLRSSTSFISPKDTKSLKTPDDFSG-TICFAPIKPSCYRLQAKNSMQEAQLTHEEIFTPEG--RKSENWEKLHALSG 77 (548)
T ss_pred CcccccCccccCCCcccccccccccccc-cccccCCCCcccccccccccchhhcccCcccCccc--cccccccccccccC
Confidence 9999999999999999999887776666 88999999977 99999999988888877777665 44444555555555
Q ss_pred CCCCCCCCCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHc
Q 047891 80 PPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKH 159 (551)
Q Consensus 80 ~~~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~ 159 (551)
+ +.+..++||||||||||+|+++|+++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++
T Consensus 78 ~-~~~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~ 156 (548)
T PLN02803 78 P-HSKNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKH 156 (548)
T ss_pred c-ccccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHc
Confidence 4 456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHH
Q 047891 160 GLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFR 239 (551)
Q Consensus 160 GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~ 239 (551)
|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|+|||+|||
T Consensus 157 GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr 236 (548)
T PLN02803 157 GLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFR 236 (548)
T ss_pred CCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCceeEEEecccCCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhhCCcCcCCCCCCCCCCCCC
Q 047891 240 ERFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQ 319 (551)
Q Consensus 240 ~~f~~~l~~~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~~~Gn~~WG~~gP~dag~Yn~ 319 (551)
++|++||+++|+||+|||||||||||||||+.+|+|+||||||||||||||+++||++|+++||++||++||||||+||+
T Consensus 237 ~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~ 316 (548)
T PLN02803 237 ERFKDYLGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQ 316 (548)
T ss_pred HHHHHHhcCceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCC
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeEEEeceeeeccCCCCChhhhhcccccCC
Q 047891 320 FPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTR 399 (551)
Q Consensus 320 ~P~~t~FF~~~g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~L~aKV~GIHWwy~t~SHaAELTAGyYNt~ 399 (551)
.|++|+||+++|+|+|+||||||+|||++||+||||||++|+.+|++++|+|++|||||||||+|+|||||||||||||+
T Consensus 317 ~P~~t~FF~~~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~ 396 (548)
T PLN02803 317 FPEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTR 396 (548)
T ss_pred CCCCCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCceeecccccccChhHHHHHHHhcCC
Q 047891 400 YRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNL 479 (551)
Q Consensus 400 ~rdGY~~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~a~~qi~~~~~~ 479 (551)
+||||.||++|||||||+|+||||||+|.+||++++|+||+||+||+++|+++||+|+|||||++||.++|+||++++++
T Consensus 397 ~rdGY~~Ia~mf~rh~~~l~FTClEM~D~eqp~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~ 476 (548)
T PLN02803 397 NHDGYLPIARMFSKHGVVLNFTCMEMRDGEQPEHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRS 476 (548)
T ss_pred CcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCccceEEeccCcccCCccChHHHHHHHHHhcCCCCCCCCCCCccCCCceeeecccccccccccccccC
Q 047891 480 DAGNGLSAFTYLRMNKKLFMSDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLCVGFVKGKNGTKTKEAALV 551 (551)
Q Consensus 480 ~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~d~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 551 (551)
+...++.+||||||++.||+++||++|++|||+|+++...+++++++..+.+.++++|+...++.++|+|+|
T Consensus 477 ~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 548 (548)
T PLN02803 477 DSGNGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGRNRRLPECDTEGSDLYVGFIKDKDAEKTTEAALV 548 (548)
T ss_pred cccCceeeeEEecCChHHcChhhHHHHHHHHHHhcCccccCccchhhccCccchhhhhcccchhhhhhhhcC
Confidence 544569999999999999999999999999999999988899999999999999999999999999999987
No 2
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=2.6e-205 Score=1615.89 Aligned_cols=540 Identities=55% Similarity=0.989 Sum_probs=509.4
Q ss_pred CcccccCc--ccccccCCCCccCCCCCCCCCceeccccCCcccccc--ccchhhhhcccCCCCcc--cccc-------cc
Q 047891 1 MALTLRSS--TSFINLNDTKTIKTPDEFSSPTTCFAKIKPSRRLRA--KSSMQEAQLCRDKHSTM--GGII-------RK 67 (551)
Q Consensus 1 m~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~-------~~ 67 (551)
|||+|++| ++||+++++++.++++.++ |++.+|++|+++ |++|+..+.+.+..+++ .+|- +.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (573)
T PLN00197 1 MAMNITHQIGALAGTPIKSGEITSTSTLS-----AKPPSPRMRCPKAMARNYEQKSQPTSPCMSPILGGMRADLSVACRA 75 (573)
T ss_pred CceeeccccchheecccCccccccccccc-----ccCCCCcccccccccchhhhhhcCCCcccCcccccccccchHHHhh
Confidence 99999999 9999999999988777554 889999999998 99999999988876555 1111 11
Q ss_pred ----------cchhhhhhccCCCCCCCCCCCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccc
Q 047891 68 ----------SEKREMVHELASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVE 137 (551)
Q Consensus 68 ----------~~~~~~~~~~~~~~~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE 137 (551)
.+.+|+.|..+.. +.+..++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE 154 (573)
T PLN00197 76 FATENDVVTIEEQREEREYRIGG-TKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVE 154 (573)
T ss_pred hhccccccccccchhhhcccccc-ccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeec
Confidence 2346778877765 56667899999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccC
Q 047891 138 KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCD 217 (551)
Q Consensus 138 ~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D 217 (551)
+++|++|||++|++||+|||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||
T Consensus 155 ~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D 234 (573)
T PLN00197 155 RESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCD 234 (573)
T ss_pred cCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEecccCCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHH
Q 047891 218 TIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 297 (551)
Q Consensus 218 ~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~ 297 (551)
++|||+||||||+|+|||+|||++|++||+++|+||+|||||||||||||||+..|+|+||||||||||||||+++|+++
T Consensus 235 ~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~a 314 (573)
T PLN00197 235 TLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAA 314 (573)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred HHhhCCcCcCCCCCCCCCCCCCCCCCCCccCC-CCccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeEEEec
Q 047891 298 AEASGNEDWGRSGPHDSGQYNQFPEDTGFFRR-DGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVA 376 (551)
Q Consensus 298 a~~~Gn~~WG~~gP~dag~Yn~~P~~t~FF~~-~g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~L~aKV~ 376 (551)
|+++||++||++||||||+||+.|++|+||++ +|+|+|+||||||+|||++||+||||||++|+.+|++++|+|++|||
T Consensus 315 A~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVa 394 (573)
T PLN00197 315 AEAAGKPEWGSTGPTDAGHYNNWPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIA 394 (573)
T ss_pred HHHhCCHhhcCCCCCCccccCCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEec
Confidence 99999999999999999999999999999995 78999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCChhhhhcccccCCCCCChHHHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCce
Q 047891 377 GIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVEL 456 (551)
Q Consensus 377 GIHWwy~t~SHaAELTAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~ 456 (551)
||||||+|+|||||||||||||++||||+|||+|||||||+|+||||||+|.+||++++|+||+||+||+++|+++||+|
T Consensus 395 GIHWwY~t~SHAAELTAGyYNt~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~PE~Lv~QV~~aA~~~Gv~v 474 (573)
T PLN00197 395 GIHWHYGTRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPL 474 (573)
T ss_pred cceeecCCCCchHhhccccccCCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccChhHHHHHHHhcCCCC-----CCCccceEEeccCcccCCccChHHHHHHHHHhcCCCCCCCCCCCccCCCc
Q 047891 457 AGENALERYDADAYAQVLATSNLDA-----GNGLSAFTYLRMNKKLFMSDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSD 531 (551)
Q Consensus 457 ~GENAL~~~d~~a~~qi~~~~~~~~-----~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~d~l~~~~~~g~~ 531 (551)
+|||||+|||.++|+||+++++.+. ..++.+||||||++.||+++||++|++|||+||++...++||++++++++
T Consensus 475 aGENAL~r~D~~~~~qI~~~~~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~ 554 (573)
T PLN00197 475 AGENALPRYDDYAHEQILQASSLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKDSHRCREQVEREAE 554 (573)
T ss_pred eeeccccccChhHHHHHHHhcccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCCCCccchhcchhcc
Confidence 9999999999999999999976532 13488999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccccccccccc
Q 047891 532 LCVGFVKGKNGTKTKEAAL 550 (551)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~ 550 (551)
.++ ++.++.++|+|+
T Consensus 555 ~~~----~~~~~~~~e~a~ 569 (573)
T PLN00197 555 HFV----HVTRPLVQEAAV 569 (573)
T ss_pred cce----ecchhhHHHHHH
Confidence 888 455667778775
No 3
>PLN02161 beta-amylase
Probab=100.00 E-value=9.5e-192 Score=1502.52 Aligned_cols=431 Identities=45% Similarity=0.904 Sum_probs=421.1
Q ss_pred CCCcceEEEeecceecCCC----cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCC
Q 047891 86 RNKVPVFVMLPLDTLSNSG----HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGL 161 (551)
Q Consensus 86 ~~~vpv~VMlPLd~V~~~~----~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GL 161 (551)
.++||||||||||+|+.++ +|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||
T Consensus 89 ~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GL 168 (531)
T PLN02161 89 HKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGL 168 (531)
T ss_pred CCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCC
Confidence 4799999999999999764 899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHH
Q 047891 162 KLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRER 241 (551)
Q Consensus 162 KvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~ 241 (551)
|||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||+|+|+|||+|||++
T Consensus 169 Klq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~ 248 (531)
T PLN02161 169 KLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTK 248 (531)
T ss_pred eEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCceeEEEecccCCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhhCCcCcCCCCCCCCCCCCCCC
Q 047891 242 FRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQFP 321 (551)
Q Consensus 242 f~~~l~~~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~~~Gn~~WG~~gP~dag~Yn~~P 321 (551)
|++||+++|+||+|||||||||||||||+.+|+|+||||||||||||||+++|+++|+++||++||++||||||.||+.|
T Consensus 249 F~~~~~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg~Yn~~P 328 (531)
T PLN02161 249 FEPYIGNVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGCYNSFP 328 (531)
T ss_pred HHHHhcCceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCcccCCCC
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCccCC-CCccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcC------CCceeEEEeceeeeccCCCCChhhhhcc
Q 047891 322 EDTGFFRR-DGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQG------TGSKLSGKVAGIHWHYRSRSHAAELTAG 394 (551)
Q Consensus 322 ~~t~FF~~-~g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g------~~v~L~aKV~GIHWwy~t~SHaAELTAG 394 (551)
++|+||++ +|+|+|+||||||+|||++||+||||||++|+.+|++ ++|+|++|||||||||+|+|||||||||
T Consensus 329 ~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHaAElTAG 408 (531)
T PLN02161 329 SGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHPAELTAG 408 (531)
T ss_pred CCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCchhhhccc
Confidence 99999997 6889999999999999999999999999999999975 6899999999999999999999999999
Q ss_pred cccCCCCCChHHHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCceeecccccccChhHHHHHH
Q 047891 395 YYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVL 474 (551)
Q Consensus 395 yYNt~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~a~~qi~ 474 (551)
|||+++||||.|||+|||||+|+|+||||||+|.|||+++.|+||+||+||+++|+++||+|+|||||+|||..+|+||+
T Consensus 409 yYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D~~~~~qi~ 488 (531)
T PLN02161 409 YYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETPEKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFDEMGLRQIR 488 (531)
T ss_pred cccCCcccchHHHHHHHHHcCceEEEEeccccCCCCCccccCCHHHHHHHHHHHHHHcCCceeecccccccChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCccceEEeccCcccCCccChHHHHHHHHHhcCC
Q 047891 475 ATSNLDAGNGLSAFTYLRMNKKLFMSDNWRNLVEFVQRMSSE 516 (551)
Q Consensus 475 ~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~ 516 (551)
++++.+++.++.+||||||++.||+++||++|++|||+||++
T Consensus 489 ~n~~~~~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~ 530 (531)
T PLN02161 489 ENCVQPNGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSAD 530 (531)
T ss_pred HHhcCCCCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCC
Confidence 999665545699999999999999999999999999999985
No 4
>PLN02801 beta-amylase
Probab=100.00 E-value=2.2e-190 Score=1492.62 Aligned_cols=430 Identities=53% Similarity=1.010 Sum_probs=419.8
Q ss_pred CCCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEE
Q 047891 86 RNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 86 ~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqv 165 (551)
.++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||||
T Consensus 13 ~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~ 92 (517)
T PLN02801 13 ANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQA 92 (517)
T ss_pred CCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhh
Q 047891 166 VMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDY 245 (551)
Q Consensus 166 vmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~ 245 (551)
|||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|+|||+|||++|++|
T Consensus 93 vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~ 172 (517)
T PLN02801 93 IMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADF 172 (517)
T ss_pred EEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-ceeEEEecccCCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhhCCcCcCCCCCCCCCCCCCCCCCC
Q 047891 246 LGD-VVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQFPEDT 324 (551)
Q Consensus 246 l~~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~~~Gn~~WG~~gP~dag~Yn~~P~~t 324 (551)
|++ +|+||+|||||||||||||||++.| |+||||||||||||||+++||++|+++||++||+ |||||+||+.|++|
T Consensus 173 l~~~~I~eI~VGlGP~GELRYPSYp~~~g-W~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~--P~dag~Yn~~P~~t 249 (517)
T PLN02801 173 LEAGVIIDIEVGLGPAGELRYPSYPETQG-WVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL--PDDAGEYNDTPEDT 249 (517)
T ss_pred ccCCeeEEEEEcccccccccCCCCcCCCC-CCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC--CCCCCcccCCCCCC
Confidence 985 9999999999999999999999987 9999999999999999999999999999999995 99999999999999
Q ss_pred CccCCCCccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeEEEeceeeeccCCCCChhhhhcccccCCCCCCh
Q 047891 325 GFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYRDGY 404 (551)
Q Consensus 325 ~FF~~~g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~L~aKV~GIHWwy~t~SHaAELTAGyYNt~~rdGY 404 (551)
+||+++|+|+|+||||||+|||++||+||||||++|+.+|++++|+|++|||||||||+|+||||||||||||+++||||
T Consensus 250 ~FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~~rDGY 329 (517)
T PLN02801 250 GFFKSNGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLKGRDGY 329 (517)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCceeecccccccChhHHHHHHHhcCCCCC--
Q 047891 405 IPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAG-- 482 (551)
Q Consensus 405 ~~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~a~~qi~~~~~~~~~-- 482 (551)
.|||+|||||+|+|+||||||+|++||++++|+||+||+||+++|+++||+|+|||||+|||.++|+||+++++++..
T Consensus 330 ~pIa~m~~rh~~~l~FTClEM~D~eq~~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~~~~~~ 409 (517)
T PLN02801 330 RPIARMLSRHYGILNFTCLEMRDTEQPAEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNARPNGVNK 409 (517)
T ss_pred HHHHHHHHHcCCeEEEeecccccCCCCcccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhhccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986431
Q ss_pred -----CCccceEEeccCcccCCccChHHHHHHHHHhcCCCC
Q 047891 483 -----NGLSAFTYLRMNKKLFMSDNWRNLVEFVQRMSSEGR 518 (551)
Q Consensus 483 -----~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~ 518 (551)
..+++||||||++.||+++||++|++|||+||++..
T Consensus 410 ~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~ 450 (517)
T PLN02801 410 DGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQD 450 (517)
T ss_pred ccccccceeeEEEecCchHhcCcchHHHHHHHHHHhccccc
Confidence 248899999999999999999999999999997543
No 5
>PLN02905 beta-amylase
Probab=100.00 E-value=1.6e-188 Score=1499.00 Aligned_cols=433 Identities=49% Similarity=0.915 Sum_probs=420.2
Q ss_pred CCCCCCCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCC
Q 047891 82 HNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGL 161 (551)
Q Consensus 82 ~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GL 161 (551)
......+||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||
T Consensus 258 ~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GL 337 (702)
T PLN02905 258 DFAGTPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKL 337 (702)
T ss_pred cccCCCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCC
Confidence 33445679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHH
Q 047891 162 KLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRER 241 (551)
Q Consensus 162 KvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~ 241 (551)
|||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|+|||+|||++
T Consensus 338 KlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~ 417 (702)
T PLN02905 338 KLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVE 417 (702)
T ss_pred eEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcC-ceeEEEecccCCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhhCCcCcCCCCCCCCCCCCCC
Q 047891 242 FRDYLGD-VVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQF 320 (551)
Q Consensus 242 f~~~l~~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~~~Gn~~WG~~gP~dag~Yn~~ 320 (551)
|++||++ +|+||+|||||||||||||||++.| |+||||||||||||||+++|+++|+++||++||+ ||||||+||+.
T Consensus 418 F~~fl~~g~I~eI~VGLGPaGELRYPSYp~s~G-W~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~-gP~dAG~YN~~ 495 (702)
T PLN02905 418 FDEFFEDGVISMVEVGLGPCGELRYPSCPVKHG-WRYPGIGEFQCYDQYLLKSLRKAAEARGHLFWAR-GPDNTGSYNSQ 495 (702)
T ss_pred HHHHhcCCceEEEEeccCCCccccCCCCcCcCC-CCCCCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCCCccCCC
Confidence 9999987 9999999999999999999999887 9999999999999999999999999999999998 99999999999
Q ss_pred CCCCCccCCCCccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeEEEeceeeeccCCCCChhhhhcccccCCC
Q 047891 321 PEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRY 400 (551)
Q Consensus 321 P~~t~FF~~~g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~L~aKV~GIHWwy~t~SHaAELTAGyYNt~~ 400 (551)
|++|+||+++|+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+|+|||||||||||||++
T Consensus 496 P~~TgFF~~~Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g--~~LaaKVaGIHWWY~t~SHAAELTAGYYNt~~ 573 (702)
T PLN02905 496 PHETGFFCDGGDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIAAKLPGVHWWYKTASHAAELTAGFYNPCN 573 (702)
T ss_pred CCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchHhhccccccCCC
Confidence 9999999999999999999999999999999999999999999986 69999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHcCcEEEEEecccCCCCCCC---CCCCChHHHHHHHHHHHHHcCCceeecccccccChhHHHHHHHhc
Q 047891 401 RDGYIPIARMLAKHGVILNFTCMEMRDTEQPG---NANCSPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATS 477 (551)
Q Consensus 401 rdGY~~Ia~mf~kh~~~l~FTClEM~d~eq~~---~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~a~~qi~~~~ 477 (551)
||||.|||+|||||+|+|+||||||+|.+||+ +++|+||+||+||+++||++||+|+|||||++||.++|+||++++
T Consensus 574 rDGY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI~~na 653 (702)
T PLN02905 574 RDGYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKILENA 653 (702)
T ss_pred cccHHHHHHHHHHcCCeEEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHh
Confidence 99999999999999999999999999999986 889999999999999999999999999999999999999999999
Q ss_pred CCCCC---CCccceEEeccCcccCCccChHHHHHHHHHhcCCCC
Q 047891 478 NLDAG---NGLSAFTYLRMNKKLFMSDNWRNLVEFVQRMSSEGR 518 (551)
Q Consensus 478 ~~~~~---~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~ 518 (551)
+++++ ..+.+||||||++.||+++||++|++|||+||++..
T Consensus 654 ~~~~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~~~~~ 697 (702)
T PLN02905 654 KPLNDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKRMHGEAV 697 (702)
T ss_pred hcccCCccCceeeeEEecCchhhcCcchHHHHHHHHHHhccccc
Confidence 87632 248999999999999999999999999999998744
No 6
>PLN02705 beta-amylase
Probab=100.00 E-value=3.3e-187 Score=1485.65 Aligned_cols=445 Identities=40% Similarity=0.765 Sum_probs=424.6
Q ss_pred hhhhhhccCCCC--CCCCCCCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccch
Q 047891 70 KREMVHELASPP--HNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWE 147 (551)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs 147 (551)
+-+.+|..+.++ +....++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWs 305 (681)
T PLN02705 226 DQLIQDVHSGEHENDFTETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWS 305 (681)
T ss_pred hhhhhccCCCCCccCcCCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcH
Confidence 345555555432 223345699999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCCh
Q 047891 148 GYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTP 227 (551)
Q Consensus 148 ~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTp 227 (551)
+|++||+|||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||
T Consensus 306 gY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTp 385 (681)
T PLN02705 306 GYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTG 385 (681)
T ss_pred HHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhcC-ceeEEEecccCCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhhCCcCc
Q 047891 228 IQVYSDYMRSFRERFRDYLGD-VVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDW 306 (551)
Q Consensus 228 iq~Y~dfm~SF~~~f~~~l~~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~~~Gn~~W 306 (551)
||+|+|||+|||++|++||++ +|+||+|||||||||||||||+..| |+||||||||||||||+++|+++|+++||++|
T Consensus 386 lq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GELRYPSYp~~~g-W~fPGiGEFQCYDkymla~Lk~aA~a~GhpeW 464 (681)
T PLN02705 386 IEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPERMG-WIYPGIGEFQCYDKYSQQNLRKAAKSRGHSFW 464 (681)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCccccCCCCcccCC-CCCCCcceeeeccHHHHHHHHHHHHHhCcHhh
Confidence 999999999999999999987 9999999999999999999999887 99999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeEEEeceeeeccCCCC
Q 047891 307 GRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRS 386 (551)
Q Consensus 307 G~~gP~dag~Yn~~P~~t~FF~~~g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~L~aKV~GIHWwy~t~S 386 (551)
|+ ||||||+||+.|++|+||+++|+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+|+|
T Consensus 465 G~-gP~dAg~YN~~P~~tgFF~~~G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~--~~LsaKVaGIHWWY~t~S 541 (681)
T PLN02705 465 AR-GPDNAGQYNSRPHETGFFCERGDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEE--TKIIVKIPAVYWWYKTAS 541 (681)
T ss_pred cc-CCCCccccCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCC
Confidence 98 899999999999999999998899999999999999999999999999999999976 799999999999999999
Q ss_pred ChhhhhcccccCCCCCChHHHHHHHHHcCcEEEEEecccCCCCC-CCCCCCChHHHHHHHHHHHHHcCCceeeccccccc
Q 047891 387 HAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQ-PGNANCSPEGLVRQVKMATRTAGVELAGENALERY 465 (551)
Q Consensus 387 HaAELTAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~eq-~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~ 465 (551)
|||||||||||+++||||.|||+|||||+|+|+|||+||+|.++ |.+++|+||+||+||+++|+++||+|+|||||++|
T Consensus 542 HAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTC~eMe~~d~~~~~a~s~PE~LV~QV~~aA~~~Gv~vaGENAL~~~ 621 (681)
T PLN02705 542 HAAELTAGYYNPTNQDGYSPVFETLKKHSVTVKFVCSGLQMSPNENDEALADPEGLSWQVLNSAWDRGLTVAGENAITCY 621 (681)
T ss_pred chhhhccccccCCCcccHHHHHHHHHHcCceEEEEeccccccCCCCCccCCCHHHHHHHHHHHHHHcCCceeeccccccc
Confidence 99999999999999999999999999999999999999999986 77899999999999999999999999999999999
Q ss_pred ChhHHHHHHHhcCCCCC---CCccceEEeccCcccCCccChHHHHHHHHHhcCCCC
Q 047891 466 DADAYAQVLATSNLDAG---NGLSAFTYLRMNKKLFMSDNWRNLVEFVQRMSSEGR 518 (551)
Q Consensus 466 d~~a~~qi~~~~~~~~~---~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~ 518 (551)
|.++|+||+++++++++ ..+.+||||||++.||+++||++|++|||+||++..
T Consensus 622 D~~ay~qI~~na~~~~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~ 677 (681)
T PLN02705 622 DREGCMRLIEIAKPRNHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCMHGDIR 677 (681)
T ss_pred CHHHHHHHHHHhcccCCCcccceeeeEEecCchHhcCcccHHHHHHHHHHhccccc
Confidence 99999999999987542 248899999999999999999999999999998653
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=1.1e-168 Score=1306.09 Aligned_cols=393 Identities=66% Similarity=1.205 Sum_probs=337.7
Q ss_pred EEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 92 FVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 92 ~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
|||||||+|+++++++ +|+++|++||++||||||||||||+||+++|++|||++|++|++|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999988876 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCcee
Q 047891 172 CGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQ 251 (551)
Q Consensus 172 CGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~ 251 (551)
|||||||+|+||||+||++++++| ||+||||+|+||+|||| ||++||| +|+|+|||+|||++|++|+ ++|+
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~-~~I~ 148 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL-STIT 148 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH-TGEE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH-hhhe
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 9999
Q ss_pred EEEecccCCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHH------hhCCcCcCCCCCCCCCCCCCCCCCCC
Q 047891 252 EIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAE------ASGNEDWGRSGPHDSGQYNQFPEDTG 325 (551)
Q Consensus 252 eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~------~~Gn~~WG~~gP~dag~Yn~~P~~t~ 325 (551)
||+|||||||||||||||+.+| |+||||||||||||||+++||++|+ ..+|++||++||||+ ||+.|++|+
T Consensus 149 ~I~vglGP~GELRYPSy~~~~g-w~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~ 225 (402)
T PF01373_consen 149 EIQVGLGPAGELRYPSYPESDG-WRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTG 225 (402)
T ss_dssp EEEE--SGGGBSS-S-S-GGGT-B-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGST
T ss_pred EEEeccCCcceeccCCCCCCCC-CcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCC
Confidence 9999999999999999999998 9999999999999999999999999 557999999999999 999999999
Q ss_pred ccCCCCccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCC-CceeEEEeceeeeccC--CCCChhhhhcccccCCCCC
Q 047891 326 FFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGT-GSKLSGKVAGIHWHYR--SRSHAAELTAGYYNTRYRD 402 (551)
Q Consensus 326 FF~~~g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~-~v~L~aKV~GIHWwy~--t~SHaAELTAGyYNt~~rd 402 (551)
||+++|+|+|+||||||+|||++|++||||||++|+.+|+++ +|+|++|||||||||+ |+||||||||||||
T Consensus 226 fF~~~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN----- 300 (402)
T PF01373_consen 226 FFRDNGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN----- 300 (402)
T ss_dssp TTSTTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S------
T ss_pred CcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC-----
Confidence 999999999999999999999999999999999999999999 9999999999999999 88999999999999
Q ss_pred ChHHHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCceeecccccccChhHHHHHHHhcCCCCC
Q 047891 403 GYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAG 482 (551)
Q Consensus 403 GY~~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~a~~qi~~~~~~~~~ 482 (551)
|+||++|||||+|+|+||||||+|.++++ ..|+||+||+||+++|+++||+|+|||||++||.++|+||+++++.
T Consensus 301 -Y~~Ia~mf~kh~~~l~fTClEM~d~~~~p-~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~--- 375 (402)
T PF01373_consen 301 -YSPIARMFKKHGVTLNFTCLEMRDSEEQP-EYSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKG--- 375 (402)
T ss_dssp -SHHHHHHHHTTT-EEEES-TT--GGSGSC-GGG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTH---
T ss_pred -HHHHHHHHHHcCcEEEEEeccccCCCCCC-CCCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhc---
Confidence 99999999999999999999999994332 3679999999999999999999999999999999999999999886
Q ss_pred CCccceEEeccCcccCCccChHHHHHH
Q 047891 483 NGLSAFTYLRMNKKLFMSDNWRNLVEF 509 (551)
Q Consensus 483 ~~~~~FTylRm~~~lf~~~n~~~F~~F 509 (551)
.++.+||||||++.||+++||++|++|
T Consensus 376 ~~~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 376 YNYSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp TTTTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred cCCCCeEEEccChHhcCcccHHhccCC
Confidence 357789999999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.77 E-value=9.4e-19 Score=180.39 Aligned_cols=212 Identities=20% Similarity=0.399 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEee-eeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCCh
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDA-WWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPP 186 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdV-WWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~ 186 (551)
+.+.|+++|+.||++|++-|.+.+ -|..+|| .||+|||+.+++++++++++|||| ||++ .+...|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~v--iL~~----------~~~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKV--ILGT----------PTAAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EE--EEEE----------CTTTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeE--EEEe----------ccccccc
Confidence 458999999999999999999855 5999999 799999999999999999999998 8888 5678999
Q ss_pred hhHHhhhcCCCeEEeCCCCCcC------ccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEecccCC
Q 047891 187 WVLEEISKNPDLVYTDKSGRRN------PEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGPC 260 (551)
Q Consensus 187 WV~~~~~~~PDi~ytD~~G~rn------~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~VGlGP~ 260 (551)
|+. +++||++.+|+.|.+. .-|++ .+.|+++++.|.+++..
T Consensus 75 Wl~---~~~Pe~~~~~~~g~~~~~g~~~~~~~~--------------~p~yr~~~~~~~~~l~~---------------- 121 (374)
T PF02449_consen 75 WLY---DKYPEILPVDADGRRRGFGSRQHYCPN--------------SPAYREYARRFIRALAE---------------- 121 (374)
T ss_dssp HHH---CCSGCCC-B-TTTSBEECCCSTT-HCC--------------HHHHHHHHHHHHHHHHH----------------
T ss_pred chh---hhcccccccCCCCCcCccCCccccchh--------------HHHHHHHHHHHHHHHHh----------------
Confidence 998 8899999999998753 22222 68899999999999988
Q ss_pred CCcCCCCCCCCCCCCcc---CCCcccccccHHHHHHHHHHHHhh------CCcCcCCCC-CCCCCCCCCC--CCCCCccC
Q 047891 261 GELRYPAYPESNGTWKF---PGIGEFQCYDKYMRASLKASAEAS------GNEDWGRSG-PHDSGQYNQF--PEDTGFFR 328 (551)
Q Consensus 261 GELRYPSyp~~~g~W~~---PGiGEFQCYDky~~~sl~~~a~~~------Gn~~WG~~g-P~dag~Yn~~--P~~t~FF~ 328 (551)
||..+|...| |.. ||.+ .||++.+++.|+++++++ .|.+||+.- .+...+++++ |..+....
T Consensus 122 ---~y~~~p~vi~-~~i~NE~~~~--~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~ 195 (374)
T PF02449_consen 122 ---RYGDHPAVIG-WQIDNEPGYH--RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPE 195 (374)
T ss_dssp ---HHTTTTTEEE-EEECCSTTCT--S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS--
T ss_pred ---hccccceEEE-EEeccccCcC--cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCC
Confidence 5555555444 444 4443 799999999999999985 699999853 2323445555 44433111
Q ss_pred CCCccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeEEEecee
Q 047891 329 RDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGI 378 (551)
Q Consensus 329 ~~g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~L~aKV~GI 378 (551)
+ .....+|...-+..+.+.-..+.+..+++- ++..|..+.-|.
T Consensus 196 ~-----~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~--p~~~vt~n~~~~ 238 (374)
T PF02449_consen 196 N-----PAQWLDWYRFQSDRVAEFFRWQADIIREYD--PDHPVTTNFMGS 238 (374)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--TT-EEE-EE-TT
T ss_pred C-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCceEEeCcccc
Confidence 1 122235555567788888887777777774 456777777766
No 9
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=5.2e-11 Score=133.03 Aligned_cols=201 Identities=24% Similarity=0.425 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEE-eeeeeccccCCCccccchhHHHH-HHHHHHcCCeEEEEEeeeccCCCCCCCCccCCC
Q 047891 108 KPRAMNASLMALKSAGVEGVMV-DAWWGLVEKDGPLNYNWEGYAEL-IQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLP 185 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l-~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP 185 (551)
+++.|+.+|++||++|++.|++ .+-|+.+|+ ..|+|||++.+.. ++++++.||.+ ||++ | ++-..|
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~v--il~t----~-----P~g~~P 95 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYV--ILRT----G-----PTGAPP 95 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceE--EEec----C-----CCCCCc
Confidence 4599999999999999999999 666999999 7999999999999 99999999999 9988 1 456699
Q ss_pred hhhHHhhhcCCCeEEeCCCCCcC------ccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEecccC
Q 047891 186 PWVLEEISKNPDLVYTDKSGRRN------PEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGP 259 (551)
Q Consensus 186 ~WV~~~~~~~PDi~ytD~~G~rn------~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~VGlGP 259 (551)
.|+. +++|+|+.+|+.|.+. +-|.+ ...|+++.+...+..++.+
T Consensus 96 ~Wl~---~~~PeiL~~~~~~~~~~~g~r~~~~~~--------------~~~Yr~~~~~i~~~irer~------------- 145 (673)
T COG1874 96 AWLA---KKYPEILAVDENGRVRSDGARENICPV--------------SPVYREYLDRILQQIRERL------------- 145 (673)
T ss_pred hHHh---cCChhheEecCCCcccCCCcccccccc--------------cHHHHHHHHHHHHHHHHHH-------------
Confidence 9999 8999999999996543 34444 2479999998888888830
Q ss_pred CCCcCCCCCCCCCCCCc----cCCCcccccccHHHHHHHHHHHHhh------CCcCcCCCC-CCCCCCCCCCCCCCCccC
Q 047891 260 CGELRYPAYPESNGTWK----FPGIGEFQCYDKYMRASLKASAEAS------GNEDWGRSG-PHDSGQYNQFPEDTGFFR 328 (551)
Q Consensus 260 ~GELRYPSyp~~~g~W~----~PGiGEFQCYDky~~~sl~~~a~~~------Gn~~WG~~g-P~dag~Yn~~P~~t~FF~ 328 (551)
|--.|...+ |+ |.|. -||++++++.|+.|+++. .|.+|++.- =|+...|.+++....|=.
T Consensus 146 -----~~~~~~v~~-w~~dneY~~~---~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e 216 (673)
T COG1874 146 -----YGNGPAVIT-WQNDNEYGGH---PCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGE 216 (673)
T ss_pred -----hccCCceeE-EEccCccCCc---cccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccc
Confidence 444444332 43 3444 499999999999999975 589999865 555556666643332222
Q ss_pred CC--CccccccchhhHHhhhhHHHhHHHHHHHHHHHhh
Q 047891 329 RD--GTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIF 364 (551)
Q Consensus 329 ~~--g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F 364 (551)
.. +.+ ..|=+|. +.+.++--++....++..|
T Consensus 217 ~~~~~~~-ld~~~f~----~e~~~~~~~~~~~~~~~~~ 249 (673)
T COG1874 217 LPLPGLY-LDYRRFE----SEQILEFVREEGEAIKAYF 249 (673)
T ss_pred cCCccch-hhHhhhh----hhhhHHHHHHHHHHHHHhC
Confidence 11 111 3333333 3446666677777777777
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.66 E-value=7.3e-08 Score=99.42 Aligned_cols=117 Identities=21% Similarity=0.429 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchh---HHHHHHHHHHcCCeEEEEEee--eccCCCCCCCCcc
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEG---YAELIQMVQKHGLKLQVVMSF--HQCGGNVGDSCTI 182 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~---Y~~l~~mv~~~GLKvqvvmsF--HqCGGNVGD~~~I 182 (551)
.++.|+.-|++||++|++.|.+.|.|...|+ .||+|||++ .++++++|+++||+| |+.+ -.|+- ..+=
T Consensus 22 p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~aE----~~~g 94 (319)
T PF01301_consen 22 PPEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICAE----WDNG 94 (319)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---TT----BGGG
T ss_pred ChhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEE--Eecccceeccc----ccch
Confidence 4789999999999999999999999999999 799999997 679999999999997 6665 23321 1111
Q ss_pred CCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhc---CceeEEEe
Q 047891 183 PLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLG---DVVQEIQV 255 (551)
Q Consensus 183 pLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~---~~I~eI~V 255 (551)
-||.||.+ +|++.+.+. ++.| ++.-+.|++.+...+++++- -.|.-|||
T Consensus 95 G~P~Wl~~----~~~~~~R~~----~~~~----------------~~~~~~~~~~~~~~~~~~~~~~GGpII~vQv 146 (319)
T PF01301_consen 95 GLPAWLLR----KPDIRLRTN----DPPF----------------LEAVERWYRALAKIIKPLQYTNGGPIIMVQV 146 (319)
T ss_dssp G--GGGGG----STTS-SSSS-----HHH----------------HHHHHHHHHHHHHHHGGGBGGGTSSEEEEEE
T ss_pred hhhhhhhc----ccccccccc----chhH----------------HHHHHHHHHHHHHHHHhhhhcCCCceehhhh
Confidence 29999973 334333211 1122 34456666677777777652 27888887
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=98.35 E-value=5.7e-06 Score=95.05 Aligned_cols=149 Identities=21% Similarity=0.304 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHH---HHHHHHHcCCeEEEEEeeecc-----CCCCCCC
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAE---LIQMVQKHGLKLQVVMSFHQC-----GGNVGDS 179 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~---l~~mv~~~GLKvqvvmsFHqC-----GGNVGD~ 179 (551)
.++.|+.-|++||++|++.|.+-|.|..-|+ .||+|||++-.+ .+++|++.||.|++=..=.-| ||
T Consensus 57 ~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GG----- 130 (840)
T PLN03059 57 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGG----- 130 (840)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCC-----
Confidence 5899999999999999999999999999999 799999998654 578999999999544443444 44
Q ss_pred CccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhc---------Cce
Q 047891 180 CTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLG---------DVV 250 (551)
Q Consensus 180 ~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~---------~~I 250 (551)
||.|+. ++|+|.+. |--+.|.+.|+.|-++..+.+. --|
T Consensus 131 ----lP~WL~----~~~~i~~R------------------------s~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPI 178 (840)
T PLN03059 131 ----FPVWLK----YVPGIEFR------------------------TDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPI 178 (840)
T ss_pred ----Cchhhh----cCCCcccc------------------------cCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcE
Confidence 999997 35554432 3346688888888777777662 256
Q ss_pred eEEEecccCCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhhCC--cCcCCCCC
Q 047891 251 QEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGN--EDWGRSGP 311 (551)
Q Consensus 251 ~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~~~Gn--~~WG~~gP 311 (551)
.-+|| |=-|.||...-| --|+.-+..|++.|++.|- |.....+|
T Consensus 179 ImvQI------ENEYGs~~~~~~-----------~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~ 224 (840)
T PLN03059 179 ILSQI------ENEYGPVEWEIG-----------APGKAYTKWAADMAVKLGTGVPWVMCKQE 224 (840)
T ss_pred EEEEe------cccccceecccC-----------cchHHHHHHHHHHHHHcCCCcceEECCCC
Confidence 77777 555777743221 1245555667777777652 44444444
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=97.81 E-value=7.2e-05 Score=80.27 Aligned_cols=111 Identities=18% Similarity=0.288 Sum_probs=89.9
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT 181 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~ 181 (551)
.......++.+|+.||++|++.+++.+=|..+||++++++| +..|+++++.++++||+..|.|. |
T Consensus 49 a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H----------- 116 (427)
T TIGR03356 49 ACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H----------- 116 (427)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------
Confidence 34678899999999999999999999999999998888888 79999999999999999966665 3
Q ss_pred cCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 047891 182 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQV 255 (551)
Q Consensus 182 IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~V 255 (551)
..+|.|+.+ +.|-.++ .-++.|.+|.+...++|.+...- ||.|..+
T Consensus 117 fd~P~~l~~------------~gGw~~~----------------~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 117 WDLPQALED------------RGGWLNR----------------DTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred CCccHHHHh------------cCCCCCh----------------HHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 359999863 2233222 22588999999999999986543 7778765
No 13
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.49 E-value=0.00053 Score=66.34 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccc-cCCCc---cccchhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVE-KDGPL---NYNWEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE-~~~p~---~YdWs~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
...+++++.||++|++-|++.+.|...+ +..+. .--|..++++++.|+++||+| |+.+|.
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~ 84 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHN 84 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEecc
Confidence 3789999999999999999999995444 43333 345788899999999999999 899995
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.29 E-value=0.00075 Score=72.77 Aligned_cols=109 Identities=23% Similarity=0.369 Sum_probs=82.3
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCC-Ccccc---chhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc
Q 047891 106 LNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDG-PLNYN---WEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT 181 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p~~Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~ 181 (551)
......++.+|+.||++|++..++.+=|..|+|.+ .+++| +..|+++++.++++|++..|.|. |
T Consensus 54 ~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H----------- 121 (455)
T PF00232_consen 54 CDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H----------- 121 (455)
T ss_dssp TGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S-----------
T ss_pred ccchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e-----------
Confidence 46788999999999999999999999999999987 78888 99999999999999999966664 2
Q ss_pred cCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEE
Q 047891 182 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQ 254 (551)
Q Consensus 182 IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~ 254 (551)
..||.|+.+.| |-.| |.-++.|.+|.+-..++|.+...- ||.|..
T Consensus 122 ~~~P~~l~~~g------------gw~~----------------~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~ 168 (455)
T PF00232_consen 122 FDLPLWLEDYG------------GWLN----------------RETVDWFARYAEFVFERFGDRVKYWITFNEPN 168 (455)
T ss_dssp S--BHHHHHHT------------GGGS----------------THHHHHHHHHHHHHHHHHTTTBSEEEEEETHH
T ss_pred cccccceeecc------------cccC----------------HHHHHHHHHHHHHHHHHhCCCcceEEeccccc
Confidence 46999998532 2222 223689999999999999997543 555544
No 15
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.25 E-value=0.0012 Score=72.24 Aligned_cols=112 Identities=17% Similarity=0.297 Sum_probs=91.5
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCC----CccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDG----PLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSC 180 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~----p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~ 180 (551)
.......++.+++.||++|++..++.+=|..++|.+ +++-.++.|+++++.++++|++..|.|.-|
T Consensus 66 A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~---------- 135 (474)
T PRK09852 66 AIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF---------- 135 (474)
T ss_pred cCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC----------
Confidence 456788999999999999999999999999999875 478889999999999999999997777653
Q ss_pred ccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 047891 181 TIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQV 255 (551)
Q Consensus 181 ~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~V 255 (551)
.||.|+.+. . .|- ..|.-++.|.+|.+-..++|.+...- ||.|..|
T Consensus 136 --~~P~~l~~~---~--------GGW----------------~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 136 --DVPMHLVTE---Y--------GSW----------------RNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred --CCCHHHHHh---c--------CCC----------------CCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 699998632 0 111 12333689999999999999997765 7888764
No 16
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.002 Score=72.59 Aligned_cols=101 Identities=22% Similarity=0.513 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHH---HHHHHcCCeEEEEEee--ecc-CCCCCCCCc
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELI---QMVQKHGLKLQVVMSF--HQC-GGNVGDSCT 181 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~---~mv~~~GLKvqvvmsF--HqC-GGNVGD~~~ 181 (551)
.++.|..-|+++|++|.++|.+-|+|..-|+ .||+|||||=.+|+ .+|++.||=| +|-- --| -.|-|.
T Consensus 47 ~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv--~LRiGPyIcaEw~~GG--- 120 (649)
T KOG0496|consen 47 TPEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYV--ILRIGPYICAEWNFGG--- 120 (649)
T ss_pred ChhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEE--EecCCCeEEecccCCC---
Confidence 4789999999999999999999999999999 89999999977765 5677888877 4322 112 223332
Q ss_pred cCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhh
Q 047891 182 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRD 244 (551)
Q Consensus 182 IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~ 244 (551)
||.|+ +.-|.|.|.. --+.|...|+.|-+..-+
T Consensus 121 --~P~wL----~~~pg~~~Rt------------------------~nepfk~~~~~~~~~iv~ 153 (649)
T KOG0496|consen 121 --LPWWL----RNVPGIVFRT------------------------DNEPFKAEMERWTTKIVP 153 (649)
T ss_pred --cchhh----hhCCceEEec------------------------CChHHHHHHHHHHHHHHH
Confidence 88666 4566666643 234466666666666555
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.20 E-value=0.012 Score=58.62 Aligned_cols=193 Identities=18% Similarity=0.326 Sum_probs=110.0
Q ss_pred eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCcccc
Q 047891 133 WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYI 212 (551)
Q Consensus 133 WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~l 212 (551)
|+.+|+ .+|+|||+..+++++.|+++|++++.-..+..+ ..|.|+.+.. .+
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~~~~----------------~~-- 53 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVFNLS----------------KE-- 53 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhhcCC----------------HH--
Confidence 899999 799999999999999999999999643223211 3789986211 00
Q ss_pred ccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEecccCCCCcCCCCCCCCCCCCccCCCcccccccHHHHH
Q 047891 213 SLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRA 292 (551)
Q Consensus 213 Slg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~ 292 (551)
.-.+...+|++....+|++. |..++|.=-|-..= -+.+... .|. +..| .+|+..
T Consensus 54 -------------~~~~~~~~~i~~v~~ry~g~----i~~wdV~NE~~~~~-~~~~~~~--~w~-~~~G-----~~~i~~ 107 (254)
T smart00633 54 -------------TLLARLENHIKTVVGRYKGK----IYAWDVVNEALHDN-GSGLRRS--VWY-QILG-----EDYIEK 107 (254)
T ss_pred -------------HHHHHHHHHHHHHHHHhCCc----ceEEEEeeecccCC-Ccccccc--hHH-HhcC-----hHHHHH
Confidence 11366777777777776654 44444443332210 0001111 132 3344 468888
Q ss_pred HHHHHHHhhCCcCcCCCCCCCCCCCCCCCCCCCccCCCCccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeE
Q 047891 293 SLKASAEASGNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLS 372 (551)
Q Consensus 293 sl~~~a~~~Gn~~WG~~gP~dag~Yn~~P~~t~FF~~~g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~L~ 372 (551)
.|+.+.+.. |+ +..|-++ |+..-+ . .+.++++...+.+... +++|-
T Consensus 108 af~~ar~~~---------P~-----------a~l~~Nd--y~~~~~-------~----~k~~~~~~~v~~l~~~-g~~iD 153 (254)
T smart00633 108 AFRYAREAD---------PD-----------AKLFYND--YNTEEP-------N----AKRQAIYELVKKLKAK-GVPID 153 (254)
T ss_pred HHHHHHHhC---------CC-----------CEEEEec--cCCcCc-------c----HHHHHHHHHHHHHHHC-CCccc
Confidence 888665421 21 2333321 221111 0 3445777777777642 44432
Q ss_pred EEeceeeeccCCCCChhhhhcccccCCCCCChHHHHHHHHHcCcEEEEEecccCCC
Q 047891 373 GKVAGIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDT 428 (551)
Q Consensus 373 aKV~GIHWwy~t~SHaAELTAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~ 428 (551)
+ =|++++..... .+-+....+++.|++.|..+.+|=++++..
T Consensus 154 g--iGlQ~H~~~~~------------~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~ 195 (254)
T smart00633 154 G--IGLQSHLSLGS------------PNIAEIRAALDRFASLGLEIQITELDISGY 195 (254)
T ss_pred e--eeeeeeecCCC------------CCHHHHHHHHHHHHHcCCceEEEEeecCCC
Confidence 2 14444432211 012346778888889999999998888754
No 18
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.97 E-value=0.003 Score=69.14 Aligned_cols=113 Identities=12% Similarity=0.242 Sum_probs=90.2
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCC----CccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDG----PLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSC 180 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~----p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~ 180 (551)
.......++.+++.||++|++..+..+=|..++|.+ +++-.+..|+++++.++++|++..|-|.-
T Consensus 64 A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H----------- 132 (477)
T PRK15014 64 AVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH----------- 132 (477)
T ss_pred ccCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-----------
Confidence 346678899999999999999999999999999975 46778999999999999999998555542
Q ss_pred ccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEec
Q 047891 181 TIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQVG 256 (551)
Q Consensus 181 ~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~VG 256 (551)
..||.||.+. . .|-.| |.-++.|.+|.+-..++|.+...- ||.|+.+-
T Consensus 133 -~dlP~~L~~~---y--------GGW~n----------------~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 133 -FEMPLHLVQQ---Y--------GSWTN----------------RKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred -CCCCHHHHHh---c--------CCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 4799999632 0 12212 222689999999999999997665 89998754
No 19
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.73 E-value=0.0072 Score=66.19 Aligned_cols=112 Identities=19% Similarity=0.316 Sum_probs=89.3
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCC----ccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGP----LNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSC 180 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p----~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~ 180 (551)
.......++.+++.||++|++.-+..+=|..|+|.+. ++=-...|++|++-++++|++-.|-|. |
T Consensus 62 a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H---------- 130 (476)
T PRK09589 62 AIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H---------- 130 (476)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C----------
Confidence 4567889999999999999999999999999999762 334478899999999999999866663 3
Q ss_pred ccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 047891 181 TIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQV 255 (551)
Q Consensus 181 ~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~V 255 (551)
..||.|+.+. . .|-.| |.-++.|.+|.+--.++|.+...- ||.|..+
T Consensus 131 -~dlP~~L~~~---y--------GGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 131 -FEMPYHLVTE---Y--------GGWRN----------------RKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred -CCCCHHHHHh---c--------CCcCC----------------hHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 5799999632 0 12222 333689999999999999998766 8888764
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.55 E-value=0.0081 Score=65.56 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=90.4
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc---cchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY---NWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT 181 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~ 181 (551)
........+.+++.||++|++.-+..+=|..|+|.+++.. -+..|++|++.++++|++-.|.|- |
T Consensus 49 a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H----------- 116 (469)
T PRK13511 49 ASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H----------- 116 (469)
T ss_pred ccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------
Confidence 4567889999999999999999999999999999876544 578899999999999999865554 3
Q ss_pred cCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEec
Q 047891 182 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQVG 256 (551)
Q Consensus 182 IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~VG 256 (551)
..||.|+.+ +.|-.|++ -++.|.+|.+-..++|.| ... ||.|..+-
T Consensus 117 ~dlP~~L~~------------~GGW~n~~----------------~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~ 164 (469)
T PRK13511 117 FDTPEALHS------------NGDWLNRE----------------NIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPI 164 (469)
T ss_pred CCCcHHHHH------------cCCCCCHH----------------HHHHHHHHHHHHHHHhCC-CCEEEEccchhhh
Confidence 579999973 22333332 268899999999999999 876 88887654
No 21
>PLN02814 beta-glucosidase
Probab=96.52 E-value=0.012 Score=65.16 Aligned_cols=112 Identities=18% Similarity=0.266 Sum_probs=90.6
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccc---hhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW---EGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT 181 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW---s~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~ 181 (551)
.......++.+++.||++|++.-+..+=|..|+|+++++.|- ..|++|++-++++|++-.|-|. |
T Consensus 72 a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H----------- 139 (504)
T PLN02814 72 ASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H----------- 139 (504)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------
Confidence 346789999999999999999999999999999988877775 6799999999999999855554 3
Q ss_pred cCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 047891 182 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQV 255 (551)
Q Consensus 182 IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~V 255 (551)
-.||.|+.+. . -|- ..|.-++.|.+|.+--.++|.+...- ||.|..+
T Consensus 140 ~dlP~~L~~~---y--------GGW----------------~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 140 YDLPQSLEDE---Y--------GGW----------------INRKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred CCCCHHHHHh---c--------CCc----------------CChhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 5799999742 0 122 22333789999999999999998765 7778764
No 22
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.52 E-value=0.011 Score=64.61 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=89.3
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT 181 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~ 181 (551)
.......++.+++.||++|++.-+..+=|..++|.+++++| ...|++|++-++++|++-.|.|. |
T Consensus 48 a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H----------- 115 (467)
T TIGR01233 48 ASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H----------- 115 (467)
T ss_pred cCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C-----------
Confidence 45678999999999999999999999999999998887764 77899999999999999855553 2
Q ss_pred cCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 047891 182 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQV 255 (551)
Q Consensus 182 IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~V 255 (551)
..||.|+.+ +-|-.| |.-++.|.+|.+--.++|.+ ..- ||.|..+
T Consensus 116 ~dlP~~L~~------------~GGW~n----------------~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 116 FDTPEALHS------------NGDFLN----------------RENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred CCCcHHHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 579999973 223222 33378899999999999998 655 8888765
No 23
>PLN02998 beta-glucosidase
Probab=96.50 E-value=0.011 Score=65.22 Aligned_cols=112 Identities=19% Similarity=0.348 Sum_probs=90.3
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT 181 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~ 181 (551)
.......++.|++.||++|++.-+..+=|..|+|++++.+| ...|+++++-++++|++-.|-|. |
T Consensus 77 a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H----------- 144 (497)
T PLN02998 77 ACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H----------- 144 (497)
T ss_pred cccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------
Confidence 45678999999999999999999999999999998877765 67899999999999999855553 3
Q ss_pred cCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 047891 182 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQV 255 (551)
Q Consensus 182 IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~V 255 (551)
..||.|+.+. . .|- ..|.-++.|.+|.+--.++|.|...- ||.|..+
T Consensus 145 ~dlP~~L~~~---y--------GGW----------------~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 145 FDLPQALEDE---Y--------GGW----------------LSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCCCHHHHHh---h--------CCc----------------CCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 5799999742 0 122 12333789999999999999997765 7888764
No 24
>PLN02849 beta-glucosidase
Probab=96.46 E-value=0.013 Score=64.76 Aligned_cols=112 Identities=18% Similarity=0.316 Sum_probs=90.3
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT 181 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~ 181 (551)
........+.+++.||++|++.-+..+=|..|+|++.++.| ...|++|++-++++|++-.|-|. |
T Consensus 74 a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H----------- 141 (503)
T PLN02849 74 ACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H----------- 141 (503)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------
Confidence 34678999999999999999999999999999998776665 66799999999999999855553 3
Q ss_pred cCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 047891 182 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQV 255 (551)
Q Consensus 182 IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~V 255 (551)
..||.|+.+. . .|-.| |.-++.|.+|.+--.++|.+...- ||.|..+
T Consensus 142 ~dlP~~L~~~---y--------GGW~n----------------r~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 142 YDHPQYLEDD---Y--------GGWIN----------------RRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CCCcHHHHHh---c--------CCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 5799999742 0 22222 333789999999999999998765 7888764
No 25
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.39 E-value=0.066 Score=49.56 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=73.1
Q ss_pred HHHHHHHHcCcceEEEeee--eec------cccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCC
Q 047891 114 ASLMALKSAGVEGVMVDAW--WGL------VEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLP 185 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVW--WGi------VE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP 185 (551)
+-+..||++||+.|++.+= +|. +-+..|+- .-.-..++++.|++.|+++.+-++|+ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 4567899999999999442 331 22212332 36788999999999999999999993 33
Q ss_pred hhhHHhhhcCCCeEEeCCCCC--cCccccccccCcccccCCCChhHHHHHHHHHHHHHHhh
Q 047891 186 PWVLEEISKNPDLVYTDKSGR--RNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRD 244 (551)
Q Consensus 186 ~WV~~~~~~~PDi~ytD~~G~--rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~ 244 (551)
.++. +++||=+..|++|+ +..+....+.-.+++ -.-|+||+..-.+++-+
T Consensus 70 ~~~~---~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~------ns~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 70 EDAA---ERHPEWFVRDADGRPMRGERFGYPGWYTCCL------NSPYREFLLEQIREILD 121 (132)
T ss_pred hHHH---HhCCceeeECCCCCCcCCCCcCCCCceecCC------CccHHHHHHHHHHHHHH
Confidence 4444 89999999999999 223333322111222 12388988887777766
No 26
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.34 E-value=0.033 Score=58.98 Aligned_cols=198 Identities=18% Similarity=0.340 Sum_probs=117.5
Q ss_pred EEEeee---eeccccCCCccccchhHHHHHHHHHHcCCeE--EEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEe
Q 047891 127 VMVDAW---WGLVEKDGPLNYNWEGYAELIQMVQKHGLKL--QVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYT 201 (551)
Q Consensus 127 V~vdVW---WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv--qvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~yt 201 (551)
+-+++| |..+|+ .+|+|+|..-+.+++.||++||++ +..+.-| ..|.|+. .
T Consensus 60 ~iTpenemKwe~i~p-~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~------------q~P~W~~-----------~ 115 (345)
T COG3693 60 QITPENEMKWEAIEP-ERGRFNFEAADAIANFARKHNMPLHGHTLVWHS------------QVPDWLF-----------G 115 (345)
T ss_pred ccccccccccccccC-CCCccCccchHHHHHHHHHcCCeeccceeeecc------------cCCchhh-----------c
Confidence 445555 999999 899999999999999999999987 3333333 3788875 1
Q ss_pred CCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEecccCCCCcCCCCCCCCCCCCccCC
Q 047891 202 DKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQVGLGPCGELRYPAYPESNGTWKFPG 279 (551)
Q Consensus 202 D~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~VGlGP~GELRYPSyp~~~g~W~~PG 279 (551)
|+ + .+.--+++++++...-..+|.+-+.+ ||.|+ |--.| ++.++ .|..-+
T Consensus 116 ~e--------~----------~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~-vdd~g-------~~R~s--~w~~~~ 167 (345)
T COG3693 116 DE--------L----------SKEALAKMVEEHIKTVVGRYKGSVASWDVVNEA-VDDQG-------SLRRS--AWYDGG 167 (345)
T ss_pred cc--------c----------ChHHHHHHHHHHHHHHHHhccCceeEEEecccc-cCCCc-------hhhhh--hhhccC
Confidence 11 1 12222577888777777777664443 56565 22222 44444 376656
Q ss_pred CcccccccHHHHHHHHHHHHhhCCcCcCCCCCCCCCCCCCCCCCCCccCCCCccccccchhhHHhhhhHHHhHHHHHHHH
Q 047891 280 IGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAA 359 (551)
Q Consensus 280 iGEFQCYDky~~~sl~~~a~~~Gn~~WG~~gP~dag~Yn~~P~~t~FF~~~g~w~S~YGkFFL~WYs~~Ll~HgdrvL~~ 359 (551)
.|. .|+..+|+.+.++ .|+ .-+|.|. | + -..--.|-+-|+.+
T Consensus 168 ~gp-----d~I~~aF~~Area---------dP~-----------AkL~~ND--Y----~-------ie~~~~kr~~~~nl 209 (345)
T COG3693 168 TGP-----DYIKLAFHIAREA---------DPD-----------AKLVIND--Y----S-------IEGNPAKRNYVLNL 209 (345)
T ss_pred Ccc-----HHHHHHHHHHHhh---------CCC-----------ceEEeec--c----c-------ccCChHHHHHHHHH
Confidence 664 8999999988763 344 1233321 1 0 00111233334444
Q ss_pred HHHhhcCCCceeEEEeceeeeccCCCCChhhhhcccccCCCCCChHHHHHHHHHcCcEEEEEecccCCCC
Q 047891 360 AKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTE 429 (551)
Q Consensus 360 A~~~F~g~~v~L~aKV~GIHWwy~t~SHaAELTAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~e 429 (551)
-+..- .. +++|-|| +..|| ++-+ ++...++-.. ..-|.|-|+.+..|=|+|++-.
T Consensus 210 I~~Lk-ek----G~pIDgi----G~QsH---~~~~--~~~~~~~~~a-~~~~~k~Gl~i~VTELD~~~~~ 264 (345)
T COG3693 210 IEELK-EK----GAPIDGI----GIQSH---FSGD--GPSIEKMRAA-LLKFSKLGLPIYVTELDMSDYT 264 (345)
T ss_pred HHHHH-HC----CCCccce----eeeee---ecCC--CCCHHHHHHH-HHHHhhcCCCceEEEeeeeccC
Confidence 43333 12 3455666 56788 2222 2223333333 3334456999999999999976
No 27
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.02 E-value=0.028 Score=61.73 Aligned_cols=113 Identities=19% Similarity=0.343 Sum_probs=89.3
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCC-Cc---cccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDG-PL---NYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSC 180 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p~---~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~ 180 (551)
.......++.+++.||++|++.-+..+=|..|+|.+ ++ +=-...|++|++-++++|++-.|-|- |
T Consensus 68 a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H---------- 136 (478)
T PRK09593 68 AIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H---------- 136 (478)
T ss_pred ccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c----------
Confidence 456789999999999999999999999999999976 33 34478899999999999999866554 3
Q ss_pred ccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEec
Q 047891 181 TIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQVG 256 (551)
Q Consensus 181 ~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~VG 256 (551)
..||.|+.+. . .|-.| |.-++.|.+|.+--.++|.+...- ||.|..+-
T Consensus 137 -~dlP~~L~~~---~--------GGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 186 (478)
T PRK09593 137 -FDCPMHLIEE---Y--------GGWRN----------------RKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMI 186 (478)
T ss_pred -cCCCHHHHhh---c--------CCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhh
Confidence 5799999632 0 12222 233688999999999999998765 88887653
No 28
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.80 E-value=0.15 Score=52.97 Aligned_cols=230 Identities=22% Similarity=0.276 Sum_probs=134.9
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeee-ec------cccCC------Ccc-ccchhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 106 LNKPRAMNASLMALKSAGVEGVMVDAWW-GL------VEKDG------PLN-YNWEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~GVdGV~vdVWW-Gi------VE~~~------p~~-YdWs~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
+..++++++-|+.|+++|++.|-+.||+ |. +++.+ +++ -.|.-...+++.+++.||+|++=|-+-.
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 3468999999999999999999999995 33 33321 111 1377899999999999999999884422
Q ss_pred cCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCcee
Q 047891 172 CGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQ 251 (551)
Q Consensus 172 CGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~ 251 (551)
-...++.. .-.-|.|+. .++|+...+...+.-+.-+|. |. .+.=++|+.+...++..-. .|.
T Consensus 95 ~~~~~~~~-~~~~p~~~~---~~~~~~~~~~~~~~~~~~~ln------P~------~PeVr~~i~~~v~Eiv~~Y--dvD 156 (311)
T PF02638_consen 95 NAPDVSHI-LKKHPEWFA---VNHPGWVRTYEDANGGYYWLN------PG------HPEVRDYIIDIVKEIVKNY--DVD 156 (311)
T ss_pred CCCchhhh-hhcCchhhe---ecCCCceeecccCCCCceEEC------CC------CHHHHHHHHHHHHHHHhcC--CCC
Confidence 11112111 112577765 466776666655554555666 32 5778899999888876522 366
Q ss_pred EEEecccCCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhhCCcCcCCCCCCCCCCCCCCCCCCCccCCCC
Q 047891 252 EIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQFPEDTGFFRRDG 331 (551)
Q Consensus 252 eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~~~Gn~~WG~~gP~dag~Yn~~P~~t~FF~~~g 331 (551)
.|++= --|||.. . + -||.+..+.|++.- | .. |. . .|.+.
T Consensus 157 GIhlD-----dy~yp~~--~---~---------g~~~~~~~~y~~~~---g-----~~-~~-----~-~~~d~------- 195 (311)
T PF02638_consen 157 GIHLD-----DYFYPPP--S---F---------GYDFPDVAAYEKYT---G-----KD-PF-----S-SPEDD------- 195 (311)
T ss_pred eEEec-----ccccccc--c---C---------CCCCccHHHHHHhc---C-----cC-CC-----C-Cccch-------
Confidence 66543 1244321 1 1 24555566666532 1 00 10 0 11111
Q ss_pred ccccccchhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeEEEeceeeeccCCCCChhhhhcccccCCCCCChHHHHHHH
Q 047891 332 TWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARML 411 (551)
Q Consensus 332 ~w~S~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~L~aKV~GIHWwy~t~SHaAELTAGyYNt~~rdGY~~Ia~mf 411 (551)
...+|=.+.+-.--.+|-...+++= +.|.+++=..|+ ||.+-.+=|.....-+
T Consensus 196 --------~W~~WRr~~I~~~V~~i~~~ik~~k--P~v~~sisp~g~-----------------~~~~y~~~~qD~~~W~ 248 (311)
T PF02638_consen 196 --------AWTQWRRDNINNFVKRIYDAIKAIK--PWVKFSISPFGI-----------------WNSAYDDYYQDWRNWL 248 (311)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEeecc-----------------hhhhhhheeccHHHHH
Confidence 1677766666665555555554432 467777654443 2233334577777777
Q ss_pred HHcCcEEEEE
Q 047891 412 AKHGVILNFT 421 (551)
Q Consensus 412 ~kh~~~l~FT 421 (551)
++-=++..++
T Consensus 249 ~~G~iD~i~P 258 (311)
T PF02638_consen 249 KEGYIDYIVP 258 (311)
T ss_pred hcCCccEEEe
Confidence 6544555555
No 29
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.19 E-value=0.22 Score=55.01 Aligned_cols=148 Identities=20% Similarity=0.254 Sum_probs=107.8
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCc-ccc---chhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q 047891 104 GHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPL-NYN---WEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDS 179 (551)
Q Consensus 104 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-~Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~ 179 (551)
...+.....+.+++.+|++|++..++.+=|..+-|.+.+ ..| -.-|++|++-+.+.|++..|-|+
T Consensus 53 ~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~----------- 121 (460)
T COG2723 53 EASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY----------- 121 (460)
T ss_pred cccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----------
Confidence 345678899999999999999999999999999997665 555 55699999999999999966554
Q ss_pred CccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEEecc
Q 047891 180 CTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQVGL 257 (551)
Q Consensus 180 ~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~VGl 257 (551)
...+|.|+.+.. .|- ..|.-++.|..|.+--.++|.|...- |..|+.|=+
T Consensus 122 -Hfd~P~~L~~~y-----------gGW----------------~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~ 173 (460)
T COG2723 122 -HFDLPLWLQKPY-----------GGW----------------ENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVV 173 (460)
T ss_pred -ccCCcHHHhhcc-----------CCc----------------cCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhh
Confidence 268999998442 122 22444789999999999999998775 788887655
Q ss_pred cCCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHh
Q 047891 258 GPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA 300 (551)
Q Consensus 258 GP~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~~ 300 (551)
. ++-..| -..|+...++-.=+-+--.+-++|++
T Consensus 174 ~---------~~y~~~-~~~p~~~~~~~~~qa~hh~~lA~A~a 206 (460)
T COG2723 174 E---------LGYLYG-GHPPGIVDPKAAYQVAHHMLLAHALA 206 (460)
T ss_pred c---------cccccc-ccCCCccCHHHHHHHHHHHHHHHHHH
Confidence 4 111122 23367666654444455555666665
No 30
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=94.76 E-value=0.18 Score=52.51 Aligned_cols=212 Identities=22% Similarity=0.393 Sum_probs=121.3
Q ss_pred HHHHHHHcCcceEEEe--eeeeccccCCCccccchhHHHHHHHHHHcCCeEE--EEEeeeccCCCCCCCCccCCChhhHH
Q 047891 115 SLMALKSAGVEGVMVD--AWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQ--VVMSFHQCGGNVGDSCTIPLPPWVLE 190 (551)
Q Consensus 115 ~L~~LK~~GVdGV~vd--VWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvq--vvmsFHqCGGNVGD~~~IpLP~WV~~ 190 (551)
..+.+-....+.|+.. -=|+.+|+ .+|+|||+.-+++++.|++.|++++ +.+. |. -.|.||.+
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~-----------~~P~w~~~ 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVW-HS-----------QTPDWVFN 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SS-----------SS-HHHHT
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEE-cc-----------cccceeee
Confidence 4555555667777765 23999999 7999999999999999999999995 5554 43 37999984
Q ss_pred hhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--------ceeEEEecccCCCC
Q 047891 191 EISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--------VVQEIQVGLGPCGE 262 (551)
Q Consensus 191 ~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--------~I~eI~VGlGP~GE 262 (551)
....+|+ . -+..++.|+.+.++...-.++ |+-|+--.-|=.+.
T Consensus 93 ~~~~~~~-----------~------------------~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~ 143 (320)
T PF00331_consen 93 LANGSPD-----------E------------------KEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGG 143 (320)
T ss_dssp STTSSBH-----------H------------------HHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSS
T ss_pred ccCCCcc-----------c------------------HHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCcccc
Confidence 4111110 0 134555565555555544432 33443222220122
Q ss_pred cCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhhCCcCcCCCCCCCCCCCCCCCCCCCccCCCCccccccchhhH
Q 047891 263 LRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASGNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFM 342 (551)
Q Consensus 263 LRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~~~Gn~~WG~~gP~dag~Yn~~P~~t~FF~~~g~w~S~YGkFFL 342 (551)
||- . .|. .-+| +.|....|+.+-+.. | +...|.|. |+....
T Consensus 144 ~r~------~-~~~-~~lG-----~~yi~~aF~~A~~~~---------P-----------~a~L~~ND--y~~~~~---- 184 (320)
T PF00331_consen 144 LRD------S-PWY-DALG-----PDYIADAFRAAREAD---------P-----------NAKLFYND--YNIESP---- 184 (320)
T ss_dssp BCT------S-HHH-HHHT-----TCHHHHHHHHHHHHH---------T-----------TSEEEEEE--SSTTST----
T ss_pred ccC------C-hhh-hccc-----HhHHHHHHHHHHHhC---------C-----------CcEEEecc--ccccch----
Confidence 222 1 121 2233 678888888777643 2 13444432 332222
Q ss_pred HhhhhHHHhHHHHHHHHHHHhhcCCCceeEEEeceeeeccCCCCChhhhhcccccCCCCCChHHHHHHHHHcCcEEEEEe
Q 047891 343 EWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYRDGYIPIARMLAKHGVILNFTC 422 (551)
Q Consensus 343 ~WYs~~Ll~HgdrvL~~A~~~F~g~~v~L~aKV~GIHWwy~t~SHaAELTAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTC 422 (551)
.+-++++.+.+.+=. .+|+|-+===--|+..... .+.....++.|+..|+.+++|=
T Consensus 185 --------~k~~~~~~lv~~l~~-~gvpIdgIG~Q~H~~~~~~---------------~~~i~~~l~~~~~~Gl~i~ITE 240 (320)
T PF00331_consen 185 --------AKRDAYLNLVKDLKA-RGVPIDGIGLQSHFDAGYP---------------PEQIWNALDRFASLGLPIHITE 240 (320)
T ss_dssp --------HHHHHHHHHHHHHHH-TTHCS-EEEEEEEEETTSS---------------HHHHHHHHHHHHTTTSEEEEEE
T ss_pred --------HHHHHHHHHHHHHHh-CCCccceechhhccCCCCC---------------HHHHHHHHHHHHHcCCceEEEe
Confidence 667888888877663 3566443111123333222 2346677778888999999999
Q ss_pred cccCCCCCC
Q 047891 423 MEMRDTEQP 431 (551)
Q Consensus 423 lEM~d~eq~ 431 (551)
|++.+...+
T Consensus 241 lDv~~~~~~ 249 (320)
T PF00331_consen 241 LDVRDDDNP 249 (320)
T ss_dssp EEEESSSTT
T ss_pred eeecCCCCC
Confidence 999988764
No 31
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=93.97 E-value=0.51 Score=45.20 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCC--Cccc-cc-------hhHHHHHHHHHHcCCeEEE
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDG--PLNY-NW-------EGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~--p~~Y-dW-------s~Y~~l~~mv~~~GLKvqv 165 (551)
+++.|++.|+.||++|++.|.+- |.-.+... |-++ ++ +....+++.|.+.|+||.+
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~ 83 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFV 83 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEE
Confidence 58999999999999999999876 54444322 3222 11 3688999999999999933
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.62 E-value=0.5 Score=50.16 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=40.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
.-|+-||+.||..|++-|| |.|...|..|...-.++++-++++|||| .|-||-
T Consensus 28 d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~v--lldfHY 80 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKV--LLDFHY 80 (332)
T ss_dssp -HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EE--EEEE-S
T ss_pred CHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeE--EEeecc
Confidence 4578899999999999997 6664458899999999999999999999 899994
No 33
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=93.36 E-value=0.11 Score=56.70 Aligned_cols=99 Identities=23% Similarity=0.361 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHH-HcCcceEEEeeeeecc-------cc-CCCc--cccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 047891 109 PRAMNASLMALK-SAGVEGVMVDAWWGLV-------EK-DGPL--NYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVG 177 (551)
Q Consensus 109 ~~~~~~~L~~LK-~~GVdGV~vdVWWGiV-------E~-~~p~--~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVG 177 (551)
...++.+|+.++ ++|+..|++ ||+. .. .+++ .|||+..+++++.+.+.|||..+-|+|
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f-------- 106 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF-------- 106 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S--------
T ss_pred hHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe--------
Confidence 367889999997 699999975 4443 11 1233 399999999999999999999999999
Q ss_pred CCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhh
Q 047891 178 DSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRD 244 (551)
Q Consensus 178 D~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~ 244 (551)
-|.++.. .+.-.|. .+..++ |- .-.+.+.|++++|..++.+
T Consensus 107 ------~p~~~~~----~~~~~~~------~~~~~~------pp----~~~~~W~~lv~~~~~h~~~ 147 (486)
T PF01229_consen 107 ------MPMALAS----GYQTVFW------YKGNIS------PP----KDYEKWRDLVRAFARHYID 147 (486)
T ss_dssp ------B-GGGBS----S--EETT------TTEE-S-------B----S-HHHHHHHHHHHHHHHHH
T ss_pred ------chhhhcC----CCCcccc------ccCCcC------Cc----ccHHHHHHHHHHHHHHHHh
Confidence 6676642 1111111 111222 21 2268899999999999987
No 34
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=90.61 E-value=1.7 Score=44.21 Aligned_cols=118 Identities=16% Similarity=0.296 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhh
Q 047891 112 MNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWV 188 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV 188 (551)
+...++++.++|+++|.++.-|+--.--+|..|. +-+++++++-+++.|.++ .+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~----~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPV----IHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCce----EEEECC-Cch-----hHHHHH
Confidence 3455666778899999999988743322455555 999999999999998765 569995 432 344555
Q ss_pred HHhhhcCCCeEEeCCCCCc--------CccccccccCcccccCCCChhHHHHHHHHHHHHHHh
Q 047891 189 LEEISKNPDLVYTDKSGRR--------NPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFR 243 (551)
Q Consensus 189 ~~~~~~~PDi~ytD~~G~r--------n~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~ 243 (551)
.+ ...|++-.|..-.- .+-||.-++|..-+|..-|| +.=++..+...+.+.
T Consensus 240 ~~---~~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~-eei~~~v~~~l~~~~ 298 (330)
T cd03465 240 AD---LGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSP-EEIKEEVKELLEKLL 298 (330)
T ss_pred HH---hCCCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCH-HHHHHHHHHHHHHHh
Confidence 53 33577776654210 13466666776623333455 333344444444443
No 35
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=88.31 E-value=5.3 Score=39.54 Aligned_cols=124 Identities=21% Similarity=0.329 Sum_probs=73.2
Q ss_pred cCCCccc-CHHHHHHHHHHH-HHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 047891 101 SNSGHLN-KPRAMNASLMAL-KSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGD 178 (551)
Q Consensus 101 ~~~~~~~-~~~~~~~~L~~L-K~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD 178 (551)
..+|... +.+...+-|+.+ ...|+|.|.|+.+|.. ...+++++.+++.|-|| |+|+|.=.+
T Consensus 68 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv--I~S~H~f~~---- 130 (228)
T TIGR01093 68 SEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKI--IMSYHDFQK---- 130 (228)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEE--EEeccCCCC----
Confidence 3455443 233333335555 6789999999988742 23677888888999888 999995432
Q ss_pred CCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccc-cCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEecc
Q 047891 179 SCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPL-LRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGL 257 (551)
Q Consensus 179 ~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pv-l~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~VGl 257 (551)
+.+.+.|+ +. -.+..++|+|-+-+ ..-+++.++.+ .+ +|..++... ..+-=|.++|
T Consensus 131 --tp~~~~l~-~~----------------~~~~~~~gaDivKia~~a~~~~D~~~-ll-~~~~~~~~~--~~~p~i~~~M 187 (228)
T TIGR01093 131 --TPSWEEIV-ER----------------LEKALSYGADIVKIAVMANSKEDVLT-LL-EITNKVDEH--ADVPLITMSM 187 (228)
T ss_pred --CCCHHHHH-HH----------------HHHHHHhCCCEEEEEeccCCHHHHHH-HH-HHHHHHHhc--CCCCEEEEeC
Confidence 12222332 11 12345677887765 34555544332 22 455555443 2344578999
Q ss_pred cCCCCcC
Q 047891 258 GPCGELR 264 (551)
Q Consensus 258 GP~GELR 264 (551)
|+.|-+-
T Consensus 188 G~~G~~S 194 (228)
T TIGR01093 188 GDRGKIS 194 (228)
T ss_pred CCCChhH
Confidence 9988653
No 36
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=88.16 E-value=7.8 Score=37.95 Aligned_cols=128 Identities=19% Similarity=0.358 Sum_probs=77.9
Q ss_pred EEeecceecCCCccc-CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 93 VMLPLDTLSNSGHLN-KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 93 VMlPLd~V~~~~~~~-~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
|.+-+-+...+|... +.+.-..-|+.+-.+|++.|.|+.+ .+.-.......+++.+-|| |+|+|-
T Consensus 57 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~~~~~i--I~S~H~ 122 (224)
T PF01487_consen 57 IIFTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARKGGTKI--ILSYHD 122 (224)
T ss_dssp EEEE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHHTTSEE--EEEEEE
T ss_pred EEEEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhhCCCeE--EEEecc
Confidence 344444555666664 3455556667777788999988655 1333333477888899998 999995
Q ss_pred cCCCCCCCCccCCChh--hHHhhhcCCCeEEeCCCCCcCccccccccCcccc-cCCCChhHHHHHHHHHHHHHHhhhhcC
Q 047891 172 CGGNVGDSCTIPLPPW--VLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPL-LRGRTPIQVYSDYMRSFRERFRDYLGD 248 (551)
Q Consensus 172 CGGNVGD~~~IpLP~W--V~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pv-l~GRTpiq~Y~dfm~SF~~~f~~~l~~ 248 (551)
..+ -|.| +.+. -.+...+|+|-+-+ ...+++.+..+ +..|..++... .
T Consensus 123 f~~---------tp~~~~l~~~----------------~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~--~ 173 (224)
T PF01487_consen 123 FEK---------TPSWEELIEL----------------LEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREE--P 173 (224)
T ss_dssp SS------------THHHHHHH----------------HHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHH--T
T ss_pred CCC---------CCCHHHHHHH----------------HHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhc--c
Confidence 544 4444 2221 23344577776665 45677666665 55666666654 5
Q ss_pred ceeEEEecccCCCCc
Q 047891 249 VVQEIQVGLGPCGEL 263 (551)
Q Consensus 249 ~I~eI~VGlGP~GEL 263 (551)
.+-=|.++||+.|.+
T Consensus 174 ~~p~i~~~MG~~G~~ 188 (224)
T PF01487_consen 174 DIPVIAISMGELGRI 188 (224)
T ss_dssp SSEEEEEEETGGGHH
T ss_pred CCcEEEEEcCCCchh
Confidence 677889999999863
No 37
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=87.63 E-value=7.5 Score=39.39 Aligned_cols=134 Identities=19% Similarity=0.331 Sum_probs=78.1
Q ss_pred cceEEEeecceecCCCccc-CHHHHHHHHHHHHHcC-cceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEE
Q 047891 89 VPVFVMLPLDTLSNSGHLN-KPRAMNASLMALKSAG-VEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 89 vpv~VMlPLd~V~~~~~~~-~~~~~~~~L~~LK~~G-VdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvv 166 (551)
.|+-++. -....+|+.. +.+...+-|+.+-.+| +|.|.|+..++. ...+++.+.+++.|.|+ |
T Consensus 75 ~PiI~T~--R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv--I 139 (253)
T PRK02412 75 KPLLFTF--RTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGK-----------DVVKEMVAFAHEHGVKV--V 139 (253)
T ss_pred CcEEEEE--CChhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCCh-----------HHHHHHHHHHHHcCCEE--E
Confidence 4544432 2334455544 2333344467777788 999999875531 34678888999999987 9
Q ss_pred EeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccc-cCCCChhHHHHHHHHHHHHHHhhh
Q 047891 167 MSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPL-LRGRTPIQVYSDYMRSFRERFRDY 245 (551)
Q Consensus 167 msFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pv-l~GRTpiq~Y~dfm~SF~~~f~~~ 245 (551)
+|+|.=.+ +++.|-+.. .-.++-++|+|-+-+ ..-+++.++.+= + .|..++..-
T Consensus 140 ~S~H~f~~--------tP~~~~l~~---------------~~~~~~~~gaDivKia~~a~~~~D~~~l-l-~~~~~~~~~ 194 (253)
T PRK02412 140 LSYHDFEK--------TPPKEEIVE---------------RLRKMESLGADIVKIAVMPQSEQDVLTL-L-NATREMKEL 194 (253)
T ss_pred EeeCCCCC--------CcCHHHHHH---------------HHHHHHHhCCCEEEEEecCCCHHHHHHH-H-HHHHHHHhc
Confidence 99995333 344443211 122455778887775 345665554442 2 344444331
Q ss_pred hcCceeEEEecccCCCCc
Q 047891 246 LGDVVQEIQVGLGPCGEL 263 (551)
Q Consensus 246 l~~~I~eI~VGlGP~GEL 263 (551)
...+-=|.++||+-|-+
T Consensus 195 -~~~~P~i~~~MG~~G~~ 211 (253)
T PRK02412 195 -YADQPLITMSMGKLGRI 211 (253)
T ss_pred -CCCCCEEEEeCCCCchH
Confidence 12344578999998854
No 38
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=86.42 E-value=1.3 Score=44.58 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeecccc--CCCc---cccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCC
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEK--DGPL---NYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPL 184 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~--~~p~---~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpL 184 (551)
+.+.+.++++.++|+++|.++.=|+.... -+|. +|-|.+|+++++.+++.|.++ + .|-||+. -++
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~--~--lH~cg~~------~~~ 213 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI--V--HHSCYDA------ADL 213 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce--E--EEECCCH------HHH
Confidence 34556667888999999999987665431 1344 445899999999888877665 3 4999873 122
Q ss_pred ChhhHHhhhcCCCeEEeCCCC-Cc--------CccccccccCcccccCCCChhHHHHHHHHHHHHH
Q 047891 185 PPWVLEEISKNPDLVYTDKSG-RR--------NPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRER 241 (551)
Q Consensus 185 P~WV~~~~~~~PDi~ytD~~G-~r--------n~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~ 241 (551)
=.++. +...|++-.|..- .. .+-+|.-++|.. ++ ..|+ +.=.+..++..+.
T Consensus 214 ~~~l~---~~~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~-~~-~~~~-e~i~~~v~~~l~~ 273 (306)
T cd00465 214 LEEMI---QLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPG-YL-PATD-EECIAKVEELVER 273 (306)
T ss_pred HHHHH---HhCcceEecccccCCHHHHHHHhCCCEEEECCCCcc-cc-CCCH-HHHHHHHHHHHHH
Confidence 22233 3344555444331 10 123677777766 33 4455 4344444444443
No 39
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=85.57 E-value=1 Score=46.80 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=66.7
Q ss_pred CCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEE
Q 047891 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 87 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvv 166 (551)
++|.|.+..--.+-. |..+-.+++++-|+.+++.||.||.||-+ .+++|+-=..|+++++.|.+++|-|
T Consensus 85 KgVgi~lw~~~~~~~--~~~~~~~~~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lmv--- 153 (273)
T PF10566_consen 85 KGVGIWLWYHSETGG--NVANLEKQLDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLMV--- 153 (273)
T ss_dssp TT-EEEEEEECCHTT--BHHHHHCCHHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-EE---
T ss_pred cCCCEEEEEeCCcch--hhHhHHHHHHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcEE---
Confidence 477777776555411 11112233699999999999999999986 3589999999999999999998854
Q ss_pred EeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccc
Q 047891 167 MSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLG 215 (551)
Q Consensus 167 msFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg 215 (551)
-||.|- .|.=+. +..|.++ .++|.|-.|+-.+.
T Consensus 154 -nfHg~~----------kPtG~~---RTyPN~m--T~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 154 -NFHGAT----------KPTGLR---RTYPNLM--TREGVRGQEYNKWS 186 (273)
T ss_dssp -EETTS-------------TTHH---HCSTTEE--EE--S--GGGGGTT
T ss_pred -EecCCc----------CCCccc---ccCccHH--HHHHhhhhhhcccc
Confidence 899762 454222 6888764 67889999994433
No 40
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=85.56 E-value=4.5 Score=45.64 Aligned_cols=109 Identities=21% Similarity=0.315 Sum_probs=82.2
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCC--ccccch---hHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGP--LNYNWE---GYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT 181 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p--~~YdWs---~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~ 181 (551)
...-..+.|++.||++||++-+..+-|..+=|.|. +..|.. .|..|++-..+.|++-.|-| ||
T Consensus 88 D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fH----------- 155 (524)
T KOG0626|consen 88 DFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FH----------- 155 (524)
T ss_pred hhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ec-----------
Confidence 45568899999999999999999999999999887 557775 59999999999999997776 46
Q ss_pred cCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcC--ceeEEE
Q 047891 182 IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGD--VVQEIQ 254 (551)
Q Consensus 182 IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~--~I~eI~ 254 (551)
--||+|+.++ .|- +|.-++ ++-++||.+=-=++|.|.... ||.|..
T Consensus 156 wDlPq~LeDe------------YgG--------------wLn~~i-vedF~~yA~~CF~~fGDrVK~WiT~NEP~ 203 (524)
T KOG0626|consen 156 WDLPQALEDE------------YGG--------------WLNPEI-VEDFRDYADLCFQEFGDRVKHWITFNEPN 203 (524)
T ss_pred CCCCHHHHHH------------hcc--------------ccCHHH-HHHHHHHHHHHHHHhcccceeeEEecccc
Confidence 3599999743 221 222233 677777776666777776654 666654
No 41
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=84.86 E-value=3.2 Score=42.75 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=54.8
Q ss_pred CcceEEEeecc---eecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEE
Q 047891 88 KVPVFVMLPLD---TLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 88 ~vpv~VMlPLd---~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvq 164 (551)
.+||+||+=-- -+-++ ..-+.|.++++.+|++|+|||.+.+= ..+++.|...-++|++.++ |+++-
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~---~E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~vT 119 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSD---GEFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLAVT 119 (248)
T ss_pred CCCeEEEEecCCCCCCCCH---HHHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCceE
Confidence 69999998442 22222 24578999999999999999998764 3588999999999999995 77774
Q ss_pred EEEeee
Q 047891 165 VVMSFH 170 (551)
Q Consensus 165 vvmsFH 170 (551)
-=++|-
T Consensus 120 FHRAfD 125 (248)
T PRK11572 120 FHRAFD 125 (248)
T ss_pred Eechhh
Confidence 445553
No 42
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=83.95 E-value=2.8 Score=45.27 Aligned_cols=54 Identities=20% Similarity=0.341 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeee
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
..+.|+++++..|++|+||..+++. .+..+.+.....+++.|++.|+|| .+||-
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKl--f~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKL--FFSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEE--EEEec
Confidence 5789999999999999999999996 345577899999999999999998 88884
No 43
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=83.78 E-value=20 Score=35.25 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=70.6
Q ss_pred ceecCCCccc-CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q 047891 98 DTLSNSGHLN-KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNV 176 (551)
Q Consensus 98 d~V~~~~~~~-~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNV 176 (551)
-+...+|... +.+...+-|+.+-.+|++.|.|+..+ +-..++++.+++.|-|| |+|+|.-.+-
T Consensus 63 R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~ki--I~S~H~f~~t- 126 (225)
T cd00502 63 RTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKI--IGSYHDFSGT- 126 (225)
T ss_pred cccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEE--EEEeccCCCC-
Confidence 3334455443 23333444666777889999998754 34777888888888888 9999965432
Q ss_pred CCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccc-cCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEe
Q 047891 177 GDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPL-LRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQV 255 (551)
Q Consensus 177 GD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pv-l~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~V 255 (551)
+ +.+.|..-. .++-.+|+|-+-+ ..-+++.+..+ .+ .|...+.... .+.=|.+
T Consensus 127 ---p--~~~~l~~~~-----------------~~~~~~gadivKla~~~~~~~D~~~-ll-~~~~~~~~~~--~~p~i~~ 180 (225)
T cd00502 127 ---P--SDEELVSRL-----------------EKMAALGADIVKIAVMANSIEDNLR-LL-KFTRQVKNLY--DIPLIAI 180 (225)
T ss_pred ---c--CHHHHHHHH-----------------HHHHHhCCCEEEEEecCCCHHHHHH-HH-HHHHHHHhcC--CCCEEEE
Confidence 1 233443211 1233456666665 23444333332 22 3444444321 3455789
Q ss_pred cccCCCCc
Q 047891 256 GLGPCGEL 263 (551)
Q Consensus 256 GlGP~GEL 263 (551)
+||+.|.+
T Consensus 181 ~MG~~G~~ 188 (225)
T cd00502 181 NMGELGKL 188 (225)
T ss_pred EcCCCCch
Confidence 99999864
No 44
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=82.98 E-value=6.3 Score=42.53 Aligned_cols=104 Identities=20% Similarity=0.283 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccC---CCccc----cchhHHHHHHHHHHcCCeEEEEEeeeccC-CCCCCCCccCC
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKD---GPLNY----NWEGYAELIQMVQKHGLKLQVVMSFHQCG-GNVGDSCTIPL 184 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~---~p~~Y----dWs~Y~~l~~mv~~~GLKvqvvmsFHqCG-GNVGD~~~IpL 184 (551)
+..+..+|++|++.|++++=|-.++.- .|.-. .+ ..+++++-|++.||+| +|..|.-. |+.+++..
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~-~ld~~I~~a~~~gi~V--~iD~H~~~~~~~~~~~s--- 149 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLK-ILDEAINWAKKLGIYV--LIDLHGYPGGNNGHEHS--- 149 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHH-HHHHHHHHHHhcCeeE--EEEecccCCCCCCcCcc---
Confidence 889999999999999999874333442 12222 34 8888999999999999 99999653 33333221
Q ss_pred ChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEe
Q 047891 185 PPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQV 255 (551)
Q Consensus 185 P~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~V 255 (551)
| +++..+. .-+-++.|.+.-+....+|+. .++|..|++
T Consensus 150 --~------------~~~~~~~-----------------~~~~~~~~~~~w~~ia~~f~~--~~~VIg~~~ 187 (407)
T COG2730 150 --G------------YTSDYKE-----------------ENENVEATIDIWKFIANRFKN--YDTVIGFEL 187 (407)
T ss_pred --c------------ccccccc-----------------cchhHHHHHHHHHHHHHhccC--CCceeeeee
Confidence 1 1111111 112268899999999999999 455555544
No 45
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=82.79 E-value=2.2 Score=42.52 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=46.2
Q ss_pred CCcceEEEeec---ceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeE
Q 047891 87 NKVPVFVMLPL---DTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 87 ~~vpv~VMlPL---d~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
..+||+||+=- |-+-++ ..-+.|..+++.+|++|++||.+.+ +- .+++.|-..-++|.+.++ |+.+
T Consensus 49 ~~ipv~vMIRpr~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~VfG~----L~--~dg~iD~~~~~~Li~~a~--~~~~ 117 (201)
T PF03932_consen 49 VDIPVHVMIRPRGGDFVYSD---EEIEIMKEDIRMLRELGADGFVFGA----LT--EDGEIDEEALEELIEAAG--GMPV 117 (201)
T ss_dssp TTSEEEEE--SSSS-S---H---HHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSEE
T ss_pred cCCceEEEECCCCCCccCCH---HHHHHHHHHHHHHHHcCCCeeEEEe----EC--CCCCcCHHHHHHHHHhcC--CCeE
Confidence 47899999854 222222 2447899999999999999999865 33 488999999999999987 7777
No 46
>PRK01060 endonuclease IV; Provisional
Probab=82.13 E-value=3.5 Score=40.94 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=42.3
Q ss_pred EeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc-----cchhHHHHHHHHHHcCCeE
Q 047891 94 MLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY-----NWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 94 MlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-----dWs~Y~~l~~mv~~~GLKv 163 (551)
|+++++.++ -.+.++..|+.++++|+++|++.+. .|..+ +=...+++-+++++.||++
T Consensus 1 ~~~~g~~~~-----~~~~~~~~l~~~~~~G~d~vEl~~~-------~p~~~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 1 MKLIGAHVS-----AAGGLEGAVAEAAEIGANAFMIFTG-------NPQQWKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCeEEEeee-----cCCCHHHHHHHHHHcCCCEEEEECC-------CCCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 667777653 1233899999999999999999654 23333 2234677888999999997
No 47
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=81.55 E-value=2.7 Score=43.49 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCc---cccchhHHHHHHHHHHcCCeEEEEEeeeccCC
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPL---NYNWEGYAELIQMVQKHGLKLQVVMSFHQCGG 174 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~---~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGG 174 (551)
...++++.++|+++|.+..-|+.-.--+|. +|-+.+++++++-+++.|... + .|-||.
T Consensus 183 ~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~--i--lH~CG~ 243 (340)
T TIGR01463 183 IAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGIT--V--LHICGF 243 (340)
T ss_pred HHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCce--E--EEECCC
Confidence 445567789999999888778742222455 445999999999999987432 3 588975
No 48
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=81.16 E-value=8.6 Score=39.75 Aligned_cols=83 Identities=12% Similarity=0.197 Sum_probs=57.1
Q ss_pred cCHHHHHHHHHHHHHcC--cceEEEeeeeeccccCCCcccc-----chhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q 047891 107 NKPRAMNASLMALKSAG--VEGVMVDAWWGLVEKDGPLNYN-----WEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDS 179 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~Yd-----Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~ 179 (551)
.+.+.+.+-++.+++.| ++.|.+|.-|-. .-+.|. |-.-+++++-+++.|+|+ ++..+
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~--~l~i~--------- 91 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRV--TLWVH--------- 91 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeE--EEEEC---------
Confidence 45788999999999988 689999986532 123333 445788888899999998 66664
Q ss_pred CccCCChhhHHhhhcCCCeEEeCCCC
Q 047891 180 CTIPLPPWVLEEISKNPDLVYTDKSG 205 (551)
Q Consensus 180 ~~IpLP~WV~~~~~~~PDi~ytD~~G 205 (551)
+.|..-.=+-+++.+. +.+.++.+|
T Consensus 92 P~i~~~s~~~~e~~~~-g~~vk~~~g 116 (303)
T cd06592 92 PFINTDSENFREAVEK-GYLVSEPSG 116 (303)
T ss_pred CeeCCCCHHHHhhhhC-CeEEECCCC
Confidence 2232222234454444 789999888
No 49
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=80.92 E-value=3 Score=40.47 Aligned_cols=64 Identities=25% Similarity=0.402 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccC-CCccc-------------cchhHHHHHHHHHHcCCeEEEEEee-ecc
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKD-GPLNY-------------NWEGYAELIQMVQKHGLKLQVVMSF-HQC 172 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~-~p~~Y-------------dWs~Y~~l~~mv~~~GLKvqvvmsF-HqC 172 (551)
|.+.|.+.|..||++||++|.+.- +.|.. +..-| .+..+++|++.|++.|+||..=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLSP---IFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEESS----EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceeccc---ccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 457889999999999999998852 22221 11112 3567899999999999999554444 655
Q ss_pred CC
Q 047891 173 GG 174 (551)
Q Consensus 173 GG 174 (551)
..
T Consensus 79 ~~ 80 (316)
T PF00128_consen 79 DD 80 (316)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 50
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=79.89 E-value=7.9 Score=39.99 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChh-
Q 047891 110 RAMNASLMALKSAGVEGVMVDAW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPW- 187 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~W- 187 (551)
+++.+.+++|.++|++.|.+|.= |+.+=...+.+..-.+.+++.+.+.+.+...++ ..|-|.||...+-...-+-|
T Consensus 155 ~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~~ 232 (332)
T cd03311 155 LALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYEP 232 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHHH
Confidence 56777888999999999999985 665443223345566677777777765655543 46999998743322222333
Q ss_pred hHH-hhhcCCCeEEeCCCCC
Q 047891 188 VLE-EISKNPDLVYTDKSGR 206 (551)
Q Consensus 188 V~~-~~~~~PDi~ytD~~G~ 206 (551)
+.+ ..+...|.++.|-...
T Consensus 233 i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCC
Confidence 222 2245578777776654
No 51
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=78.47 E-value=10 Score=38.92 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=65.5
Q ss_pred CCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEE
Q 047891 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 87 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvv 166 (551)
..+|+.+|.=...|- .-.+++=++.+|++||+||-++ += -+...+++++.++++||++.+.
T Consensus 88 ~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviip--------DL----p~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIP--------DL----PPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEEC--------CC----CHHHHHHHHHHHHHcCCcEEEE
Confidence 468988888776542 2367778999999999999996 11 2367889999999999999654
Q ss_pred EeeeccCCCCCCCCccCCChhhHHhhhcCCC-eEEeCCCCC
Q 047891 167 MSFHQCGGNVGDSCTIPLPPWVLEEISKNPD-LVYTDKSGR 206 (551)
Q Consensus 167 msFHqCGGNVGD~~~IpLP~WV~~~~~~~PD-i~ytD~~G~ 206 (551)
++- + +.+..+..+.+..++ |++....|.
T Consensus 149 vap-----------~-t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 149 VAP-----------T-TTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred eCC-----------C-CCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 443 2 246788888788888 555577665
No 52
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=77.86 E-value=3.8 Score=43.64 Aligned_cols=80 Identities=15% Similarity=0.326 Sum_probs=53.2
Q ss_pred CcceEEEeecceecC-----CC----cccCHHHHHH-----------HHHHHHHcCcce-EEEeee--ee-ccccCCCcc
Q 047891 88 KVPVFVMLPLDTLSN-----SG----HLNKPRAMNA-----------SLMALKSAGVEG-VMVDAW--WG-LVEKDGPLN 143 (551)
Q Consensus 88 ~vpv~VMlPLd~V~~-----~~----~~~~~~~~~~-----------~L~~LK~~GVdG-V~vdVW--WG-iVE~~~p~~ 143 (551)
.+-..+..|++++.. .+ -+.+++.+.+ .+++..++|+++ |.+..+ |+ ++. |.+
T Consensus 172 pi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~ls---p~~ 248 (378)
T cd03308 172 NAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLR---PKQ 248 (378)
T ss_pred ccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccC---HHH
Confidence 455678889995542 11 1234544444 344556789998 777776 43 443 556
Q ss_pred cc---chhHHHHHHHHHHcCCeEEEEEeeeccCC
Q 047891 144 YN---WEGYAELIQMVQKHGLKLQVVMSFHQCGG 174 (551)
Q Consensus 144 Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGG 174 (551)
|+ |-+++++++-+++.|.++ |+ |-||.
T Consensus 249 f~ef~~P~~k~i~~~i~~~g~~~--il--h~cG~ 278 (378)
T cd03308 249 FEKFYWPSFKKVVEGLAARGQRI--FL--FFEGD 278 (378)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCE--EE--EcCCC
Confidence 65 999999999999988655 44 99984
No 53
>PLN02229 alpha-galactosidase
Probab=76.69 E-value=4.7 Score=44.53 Aligned_cols=70 Identities=24% Similarity=0.435 Sum_probs=49.4
Q ss_pred CHHHHHHHHHH-----HHHcCcceEEEeeeeeccccCC-------CccccchhHHHHHHHHHHcCCeEEEE--EeeeccC
Q 047891 108 KPRAMNASLMA-----LKSAGVEGVMVDAWWGLVEKDG-------PLNYNWEGYAELIQMVQKHGLKLQVV--MSFHQCG 173 (551)
Q Consensus 108 ~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~-------p~~YdWs~Y~~l~~mv~~~GLKvqvv--msFHqCG 173 (551)
+++.+.+...+ ||.+|.+.|.||.=|...++.. |.+|- +|.+.|++.+++.|||+=.. -....|+
T Consensus 78 ~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfGIy~d~G~~TC~ 156 (427)
T PLN02229 78 NETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLGIYSDAGVFTCQ 156 (427)
T ss_pred CHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceEEeccCCCcccC
Confidence 57888888887 5999999999998664333333 33443 68999999999999998332 2334566
Q ss_pred CCCCC
Q 047891 174 GNVGD 178 (551)
Q Consensus 174 GNVGD 178 (551)
|+.|.
T Consensus 157 ~~pGS 161 (427)
T PLN02229 157 VRPGS 161 (427)
T ss_pred CCCCC
Confidence 64433
No 54
>PLN02361 alpha-amylase
Probab=76.54 E-value=8.9 Score=41.84 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=49.2
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccc-------------hhHHHHHHHHHHcCCeEEEEEee-ecc
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW-------------EGYAELIQMVQKHGLKLQVVMSF-HQC 172 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-------------s~Y~~l~~mv~~~GLKvqvvmsF-HqC 172 (551)
+-++.|.+.|..||++||++|-+.-=. |..++.-|+- +.+++|++.+++.|+||.+=+-+ |-|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~---~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~ 102 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPS---QSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRV 102 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCC---cCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccccc
Confidence 357999999999999999999887532 3223333333 46899999999999999654444 777
Q ss_pred CCCC
Q 047891 173 GGNV 176 (551)
Q Consensus 173 GGNV 176 (551)
|..-
T Consensus 103 g~~~ 106 (401)
T PLN02361 103 GTTQ 106 (401)
T ss_pred CCCC
Confidence 6543
No 55
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=76.51 E-value=31 Score=35.63 Aligned_cols=92 Identities=15% Similarity=0.286 Sum_probs=67.3
Q ss_pred CCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEE
Q 047891 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 87 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvv 166 (551)
..+|+.+|.=+..|- .-.+++-++.++++||+||-++-- | +.-..++.+.++++||+....
T Consensus 90 ~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEEE
Confidence 468988888776542 246788899999999999999753 2 245788999999999999777
Q ss_pred EeeeccCCCCCCCCccCCChhhHHhhhcCCC-eEEeCCCCCcCc
Q 047891 167 MSFHQCGGNVGDSCTIPLPPWVLEEISKNPD-LVYTDKSGRRNP 209 (551)
Q Consensus 167 msFHqCGGNVGD~~~IpLP~WV~~~~~~~PD-i~ytD~~G~rn~ 209 (551)
++-. +.+..+..+.+.-.. |++..+.|..-.
T Consensus 151 v~Pt------------T~~eri~~i~~~a~gFIY~vS~~GvTG~ 182 (263)
T CHL00200 151 IAPT------------SSKSRIQKIARAAPGCIYLVSTTGVTGL 182 (263)
T ss_pred ECCC------------CCHHHHHHHHHhCCCcEEEEcCCCCCCC
Confidence 7652 356788777666644 555577776543
No 56
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=76.17 E-value=17 Score=37.23 Aligned_cols=88 Identities=9% Similarity=0.290 Sum_probs=60.2
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeccccCCCccccch-----hHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 047891 106 LNKPRAMNASLMALKSAG--VEGVMVDAWWGLVEKDGPLNYNWE-----GYAELIQMVQKHGLKLQVVMSFHQCGGNVGD 178 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD 178 (551)
..+.+.+.+-++.++++| +|.|.+|.=|- ...+-+.|+|. .-+++++-+++.|+|+ ++..|-. |+.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~--~~~~~P~---i~~ 92 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKV--CLWINPY---IAQ 92 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeE--EEEecCC---CCC
Confidence 356888999999999999 88999997443 21111245555 6889999999999998 6666633 211
Q ss_pred CCccCCChhhHHhhhcCCCeEEeCCCCCc
Q 047891 179 SCTIPLPPWVLEEISKNPDLVYTDKSGRR 207 (551)
Q Consensus 179 ~~~IpLP~WV~~~~~~~PDi~ytD~~G~r 207 (551)
+ -| +-+++.+ ++.|.++.+|..
T Consensus 93 ~----~~--~~~e~~~-~g~~v~~~~g~~ 114 (308)
T cd06593 93 K----SP--LFKEAAE-KGYLVKKPDGSV 114 (308)
T ss_pred C----ch--hHHHHHH-CCeEEECCCCCe
Confidence 1 12 3445543 488999988764
No 57
>smart00642 Aamy Alpha-amylase domain.
Probab=76.07 E-value=14 Score=35.13 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=48.0
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeecccc-CCCccc-------------cchhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 106 LNKPRAMNASLMALKSAGVEGVMVDAWWGLVEK-DGPLNY-------------NWEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~-~~p~~Y-------------dWs~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
.-+.+.+.+.|..||++||++|-+.-.+-..+. .....| ..+.+++|++.|+++|++|..=+-+--
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 356789999999999999999977544322210 001111 346789999999999999966666655
Q ss_pred cCC
Q 047891 172 CGG 174 (551)
Q Consensus 172 CGG 174 (551)
|+.
T Consensus 95 ~~~ 97 (166)
T smart00642 95 TSD 97 (166)
T ss_pred CCC
Confidence 544
No 58
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=74.73 E-value=3.5 Score=37.89 Aligned_cols=46 Identities=26% Similarity=0.260 Sum_probs=36.1
Q ss_pred HHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEE
Q 047891 116 LMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 116 L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvv 166 (551)
|+.++++|+++|++..++..-.... =...+++.++++++||++..+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-----~~~~~~~~~~~~~~gl~i~~~ 46 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-----DDEAEELRRLLEDYGLKIASL 46 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-----HHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-----hHHHHHHHHHHHHcCCeEEEE
Confidence 6889999999999998866443311 456889999999999997433
No 59
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=74.72 E-value=22 Score=36.74 Aligned_cols=110 Identities=17% Similarity=0.314 Sum_probs=73.3
Q ss_pred CCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEE
Q 047891 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 87 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvv 166 (551)
..+|+.+|.=.+.|- ...+++=++.++++||+||.++= =| +....++.+.++++||++...
T Consensus 86 ~~~pivlm~Y~N~i~-------~~G~e~F~~~~~~aGvdGlIipD--------LP----~ee~~~~~~~~~~~gl~~I~l 146 (259)
T PF00290_consen 86 PDIPIVLMTYYNPIF-------QYGIERFFKEAKEAGVDGLIIPD--------LP----PEESEELREAAKKHGLDLIPL 146 (259)
T ss_dssp TSSEEEEEE-HHHHH-------HH-HHHHHHHHHHHTEEEEEETT--------SB----GGGHHHHHHHHHHTT-EEEEE
T ss_pred CCCCEEEEeeccHHh-------ccchHHHHHHHHHcCCCEEEEcC--------CC----hHHHHHHHHHHHHcCCeEEEE
Confidence 589999999887652 25677789999999999999852 22 356688999999999999666
Q ss_pred EeeeccCCCCCCCCccCCChhhHHhhhcCCCe-EEeCCCCCcCccccccccCcccccCCCChh-HHHHHHHHHHHHHH
Q 047891 167 MSFHQCGGNVGDSCTIPLPPWVLEEISKNPDL-VYTDKSGRRNPEYISLGCDTIPLLRGRTPI-QVYSDYMRSFRERF 242 (551)
Q Consensus 167 msFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi-~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi-q~Y~dfm~SF~~~f 242 (551)
.+=. ..+..+..+.+.-+.. ++....|..- .|+.+ ..+.++.+..|+..
T Consensus 147 v~p~------------t~~~Ri~~i~~~a~gFiY~vs~~GvTG---------------~~~~~~~~l~~~i~~ik~~~ 197 (259)
T PF00290_consen 147 VAPT------------TPEERIKKIAKQASGFIYLVSRMGVTG---------------SRTELPDELKEFIKRIKKHT 197 (259)
T ss_dssp EETT------------S-HHHHHHHHHH-SSEEEEESSSSSSS---------------TTSSCHHHHHHHHHHHHHTT
T ss_pred ECCC------------CCHHHHHHHHHhCCcEEEeeccCCCCC---------------CcccchHHHHHHHHHHHhhc
Confidence 6541 3567888777766674 4457777532 12211 44667777666654
No 60
>PHA00442 host recBCD nuclease inhibitor
Probab=74.10 E-value=3.2 Score=34.02 Aligned_cols=27 Identities=41% Similarity=0.901 Sum_probs=22.7
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHc
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKH 159 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~ 159 (551)
.-|.+|++.||| ||+||.+..+|+...
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 457888899987 899999999998653
No 61
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.47 E-value=7.2 Score=38.83 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=45.5
Q ss_pred eecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchh--HHHHHHHHHHcCCeEEEE
Q 047891 95 LPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEG--YAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 95 lPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~--Y~~l~~mv~~~GLKvqvv 166 (551)
+||.+... .++....++..++.++++|+++|++.+. . . ......++|+. .+++-++++++||+|..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~-~-~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVD-E-S-DERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecC-c-c-ccchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 45555432 3444457899999999999999999643 0 0 00123456654 668899999999999654
No 62
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=73.42 E-value=7.1 Score=39.03 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccc--hhHHHHHHHHHHcCCeEEEE
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW--EGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW--s~Y~~l~~mv~~~GLKvqvv 166 (551)
.-.|...|+.++++|+++|++.++-.. + .+..++| ..-.++.++++++||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDETD-D--RLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCcc-c--hhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 467899999999999999999654321 1 2333444 44667888999999999544
No 63
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=72.45 E-value=29 Score=36.82 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=60.4
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHhhh
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEIS 193 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~ 193 (551)
.+|+...+.||+.|.|-.-+...+ .-.+.++.+|+.|+++.+.+.. ..-.-|..+.+..+
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~~----------~~~~~i~~ak~~G~~v~~~l~~----------a~~~~~e~l~~~a~ 151 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEAD----------VSEQHIGLARELGMDTVGFLMM----------SHMAPPEKLAEQAK 151 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchHH----------HHHHHHHHHHHCCCeEEEEEEe----------ccCCCHHHHHHHHH
Confidence 578899999999999887443322 3589999999999999776664 22335666665322
Q ss_pred ----cCCC-eEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHH
Q 047891 194 ----KNPD-LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERF 242 (551)
Q Consensus 194 ----~~PD-i~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f 242 (551)
..+| |.++|-.|. -|| +.-.++.+.+++++
T Consensus 152 ~~~~~Ga~~i~i~DT~G~------------------~~P-~~v~~~v~~l~~~l 186 (337)
T PRK08195 152 LMESYGAQCVYVVDSAGA------------------LLP-EDVRDRVRALRAAL 186 (337)
T ss_pred HHHhCCCCEEEeCCCCCC------------------CCH-HHHHHHHHHHHHhc
Confidence 2345 666777775 345 34456666676654
No 64
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=71.25 E-value=7.9 Score=39.95 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=40.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHcCCeEEEEEeeeccCC
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKHGLKLQVVMSFHQCGG 174 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGG 174 (551)
+-+++..++|+++|.+..-|+-..--+|..|. +-+++++++-+++ + . +| .|-||+
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~-~--~i--lh~cG~ 232 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C-P--TI--LHICGN 232 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C-C--cE--EEECCC
Confidence 44555677899999998889854322577777 9999999999988 2 1 23 588975
No 65
>PLN02591 tryptophan synthase
Probab=71.00 E-value=24 Score=36.16 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=64.7
Q ss_pred CCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEE
Q 047891 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 87 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvv 166 (551)
..+|+.+|.=...|- .-.+++=++.+|++||+||-++= .-++.-.++.+.++++||...+.
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~GviipD------------LP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVPD------------LPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeCC------------CCHHHHHHHHHHHHHcCCeEEEE
Confidence 357988888777652 24788889999999999999971 23467778999999999999655
Q ss_pred EeeeccCCCCCCCCccCCChhhHHhhhcCCCeEE-eCCCCC
Q 047891 167 MSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVY-TDKSGR 206 (551)
Q Consensus 167 msFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~y-tD~~G~ 206 (551)
.+- + +-+..+..+.+.-++..| ..+.|.
T Consensus 138 v~P-----------t-t~~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 138 TTP-----------T-TPTERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred eCC-----------C-CCHHHHHHHHHhCCCcEEEeeCCCC
Confidence 543 1 245688888777777443 355554
No 66
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=70.51 E-value=35 Score=36.25 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHhh
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEI 192 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~ 192 (551)
..+|+...+.||+.|.|-.-.... .--.+.++.+|+.|+++++.+.. ..-.-|.-+.+..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~----------d~~~~~i~~ak~~G~~v~~~l~~----------s~~~~~e~l~~~a 149 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA----------DVSEQHIGMARELGMDTVGFLMM----------SHMTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH----------HHHHHHHHHHHHcCCeEEEEEEc----------ccCCCHHHHHHHH
Confidence 357899999999999988743322 23679999999999999765543 1123456555532
Q ss_pred ----hcCCC-eEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHh
Q 047891 193 ----SKNPD-LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFR 243 (551)
Q Consensus 193 ----~~~PD-i~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~ 243 (551)
+..+| |.++|-.|. -|| +...++.+.+++++.
T Consensus 150 ~~~~~~Ga~~i~i~DT~G~------------------~~P-~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 150 KLMESYGADCVYIVDSAGA------------------MLP-DDVRDRVRALKAVLK 186 (333)
T ss_pred HHHHhcCCCEEEEccCCCC------------------CCH-HHHHHHHHHHHHhCC
Confidence 22344 667777775 344 456677777776643
No 67
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=70.04 E-value=11 Score=41.09 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeee-----------eccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWW-----------GLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNV 176 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWW-----------GiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNV 176 (551)
+.+.+.+.+.++|++|++-+.||-=| |.-++ .+.+|= +|.+.|++-|++.|||. =|.|=--.-|.
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~--GlW~ePe~v~~ 131 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKF--GLWFEPEMVSP 131 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EE--EEEEETTEEES
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeE--EEEeccccccc
Confidence 58899999999999999999998766 33333 234442 58999999999999999 44442111122
Q ss_pred CCCCccCCChhhHH
Q 047891 177 GDSCTIPLPPWVLE 190 (551)
Q Consensus 177 GD~~~IpLP~WV~~ 190 (551)
+-...-.-|.|+..
T Consensus 132 ~S~l~~~hPdw~l~ 145 (394)
T PF02065_consen 132 DSDLYREHPDWVLR 145 (394)
T ss_dssp SSCHCCSSBGGBTC
T ss_pred hhHHHHhCccceee
Confidence 22333346777763
No 68
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.78 E-value=13 Score=36.80 Aligned_cols=51 Identities=14% Similarity=0.369 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeccccCCCccc--cc--hhHHHHHHHHHHcCCeEEEEEe
Q 047891 111 AMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY--NW--EGYAELIQMVQKHGLKLQVVMS 168 (551)
Q Consensus 111 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dW--s~Y~~l~~mv~~~GLKvqvvms 168 (551)
.++..|+.++++|+++|++ |+. .+..| ++ ..-+++.++++++||++..+..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~ 68 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTP 68 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecC
Confidence 5899999999999999998 321 11111 12 2467788899999999854333
No 69
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=68.51 E-value=11 Score=42.78 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=40.1
Q ss_pred HHHHHHHH-HHHHHcCcceEEE-eeeeeccccCCCccccch-----------------hHHHHHHHHHHcCCeEEEEEee
Q 047891 109 PRAMNASL-MALKSAGVEGVMV-DAWWGLVEKDGPLNYNWE-----------------GYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 109 ~~~~~~~L-~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.+++...| ..||++||+.|.+ +|... |...+|- .+++|++.+++.||+|..=+-+
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 57777886 9999999999999 66431 2222222 4899999999999999444444
No 70
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=68.12 E-value=12 Score=42.23 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccch-----------------hHHHHHHHHHHcCCeEEEEEeee
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWE-----------------GYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
+.+++...|..||++||++|.+-= +.| .|+.++|- .+++|++.+++.||+|..=+-+-
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 447888999999999999997632 122 24445554 38999999999999996555553
Q ss_pred ccC
Q 047891 171 QCG 173 (551)
Q Consensus 171 qCG 173 (551)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 343
No 71
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.64 E-value=1.1e+02 Score=34.18 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=97.5
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeee-eecc------ccCCCc-------cccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 104 GHLNKPRAMNASLMALKSAGVEGVMVDAW-WGLV------EKDGPL-------NYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 104 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVW-WGiV------E~~~p~-------~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
..+..+..+...|..|..+|++.|-+-|| +|.+ .+...+ .=.|.-...+++.+++.||++++=+.|
T Consensus 58 ~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~ 137 (418)
T COG1649 58 RVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNP 137 (418)
T ss_pred cccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhh
Confidence 34678999999999999999999999999 8853 222222 113445566777788999999887777
Q ss_pred eccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCc
Q 047891 170 HQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDV 249 (551)
Q Consensus 170 HqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~ 249 (551)
---+ +---.-..-=|.|+. .+.|+-.|....|.. +..+|++- ++.=++|+.+...+.-.
T Consensus 138 ~~~a-~~~s~~~~~~p~~~~---~~~~~~~~~~~~~~~----------~~~~ldPg--~Pevq~~i~~lv~evV~----- 196 (418)
T COG1649 138 YRMA-PPTSPLTKRHPHWLT---TKRPGWVYVRHQGWG----------KRVWLDPG--IPEVQDFITSLVVEVVR----- 196 (418)
T ss_pred cccC-CCCChhHhhCCCCcc---cCCCCeEEEecCCce----------eeeEeCCC--ChHHHHHHHHHHHHHHh-----
Confidence 2211 100011122356666 555666666666543 33455544 46678888888888776
Q ss_pred eeEEEecccCCCCcCCCCCCCC-CCCCccCCCcccccccHHHHHHHHH
Q 047891 250 VQEIQVGLGPCGELRYPAYPES-NGTWKFPGIGEFQCYDKYMRASLKA 296 (551)
Q Consensus 250 I~eI~VGlGP~GELRYPSyp~~-~g~W~~PGiGEFQCYDky~~~sl~~ 296 (551)
+|....-. |--|.||.-+ .||++++.--+.
T Consensus 197 --------------~YdvDGIQfDd~fy~~~~~---gy~~~~~~~y~~ 227 (418)
T COG1649 197 --------------NYDVDGIQFDDYFYYPIPF---GYDPDTVTLYRY 227 (418)
T ss_pred --------------CCCCCceecceeecccCcc---ccCchHHHHHHh
Confidence 66665431 1125555442 688888765443
No 72
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=67.49 E-value=19 Score=32.69 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHc-CCeEEEEEeee
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKH-GLKLQVVMSFH 170 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKvqvvmsFH 170 (551)
.+.+...++.||..|||.|.+..= ++-. .|.- ---.++++.+++++. |++| |..||
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC--~~~~-~~~~-~CP~~~~~~~~I~~~~gi~V--V~GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSC--MVKG-NPHG-PCPHIDEIKKIIEEKFGIEV--VEGTH 107 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCC--EecC-CCCC-CCCCHHHHHHHHHHHhCCCE--eeecC
Confidence 577888999999999998887542 2222 1111 334499999999999 9987 98888
No 73
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=67.11 E-value=14 Score=39.77 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccc----cCCCccccchhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVE----KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE----~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
+.-|..||++||.-|++-||=-=-. +-+-|.=|-..--++.+-+++.|+|| .+-||-
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKV--l~dFHY 126 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKV--LLDFHY 126 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEE--Eeeccc
Confidence 4568899999999999999932211 11244556666667777778889999 999993
No 74
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=66.66 E-value=15 Score=37.03 Aligned_cols=55 Identities=16% Similarity=0.075 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeecc---ccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLV---EKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiV---E~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
+..|+.||++|++.|.+++= +.- +.-. +..+|..+.+.++.++++|+++.+-+-+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 56788999999999988743 321 1111 2468999999999999999997555544
No 75
>PRK10658 putative alpha-glucosidase; Provisional
Probab=66.52 E-value=47 Score=38.66 Aligned_cols=87 Identities=11% Similarity=0.227 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcC--cceEEEeeeeeccccCCCccccch-----hHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC
Q 047891 108 KPRAMNASLMALKSAG--VEGVMVDAWWGLVEKDGPLNYNWE-----GYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSC 180 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~ 180 (551)
+.+.+..-++.+++.| ++.|.+|+.|.. ...-+.|.|. .-+++++-+++.|+|+ ++..+ +
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~--~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~--~~~i~---------P 347 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMK--EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKI--CVWIN---------P 347 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhc--CCceeeeEEChhhCCCHHHHHHHHHHCCCEE--EEecc---------C
Confidence 4566777788888766 589999998842 1112344443 4578889999999998 55554 3
Q ss_pred ccCCChhhHHhhhcCCCeEEeCCCCCcC
Q 047891 181 TIPLPPWVLEEISKNPDLVYTDKSGRRN 208 (551)
Q Consensus 181 ~IpLP~WV~~~~~~~PDi~ytD~~G~rn 208 (551)
.|..-.-+-+++.++ +.|.++.+|..-
T Consensus 348 ~i~~~s~~f~e~~~~-gy~vk~~~G~~~ 374 (665)
T PRK10658 348 YIAQKSPLFKEGKEK-GYLLKRPDGSVW 374 (665)
T ss_pred CcCCCchHHHHHHHC-CeEEECCCCCEe
Confidence 343333456677666 899999999753
No 76
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=66.05 E-value=44 Score=38.05 Aligned_cols=64 Identities=20% Similarity=0.412 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCcceEEE-eee---------------eecccc--CC-Cccc---------cchhHHHHHHHHHHcCC
Q 047891 110 RAMNASLMALKSAGVEGVMV-DAW---------------WGLVEK--DG-PLNY---------NWEGYAELIQMVQKHGL 161 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~v-dVW---------------WGiVE~--~~-p~~Y---------dWs~Y~~l~~mv~~~GL 161 (551)
..+...|..||++||+.|.+ +|. ||--=. -. ...| ....+++|++.+++.||
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi 243 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGI 243 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCC
Confidence 45567799999999999976 232 442100 00 0001 03569999999999999
Q ss_pred eEEEEEee-eccC
Q 047891 162 KLQVVMSF-HQCG 173 (551)
Q Consensus 162 KvqvvmsF-HqCG 173 (551)
+|..=+-| |-|+
T Consensus 244 ~VilDvV~NH~~~ 256 (605)
T TIGR02104 244 RVIMDVVYNHTYS 256 (605)
T ss_pred EEEEEEEcCCccC
Confidence 99776667 5443
No 77
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=65.86 E-value=24 Score=37.85 Aligned_cols=85 Identities=13% Similarity=0.257 Sum_probs=58.4
Q ss_pred cCHHHHHHHHHHHHHcC--cceEEEeeeeeccccCCCccccch-----hHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q 047891 107 NKPRAMNASLMALKSAG--VEGVMVDAWWGLVEKDGPLNYNWE-----GYAELIQMVQKHGLKLQVVMSFHQCGGNVGDS 179 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~ 179 (551)
.+.+.+.+-++.+++.| +|++.+|.+|+.-. +.|.|+ .-+++++.+++.|+|+ ++..|
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~--~~~~~--------- 104 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKV--VLWVH--------- 104 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EE--EEEEE---------
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEE--EEEee---------
Confidence 45788899999999865 68999999987622 244444 5799999999999998 67776
Q ss_pred CccCCChh---hHHhhhcCCCeEEeCCCCCc
Q 047891 180 CTIPLPPW---VLEEISKNPDLVYTDKSGRR 207 (551)
Q Consensus 180 ~~IpLP~W---V~~~~~~~PDi~ytD~~G~r 207 (551)
+.|....- ..+++... ++++++.+|..
T Consensus 105 P~v~~~~~~~~~~~~~~~~-~~~v~~~~g~~ 134 (441)
T PF01055_consen 105 PFVSNDSPDYENYDEAKEK-GYLVKNPDGSP 134 (441)
T ss_dssp SEEETTTTB-HHHHHHHHT-T-BEBCTTSSB
T ss_pred cccCCCCCcchhhhhHhhc-CceeecccCCc
Confidence 44444444 44444444 88999999943
No 78
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=65.33 E-value=81 Score=32.26 Aligned_cols=63 Identities=22% Similarity=0.407 Sum_probs=46.0
Q ss_pred CcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEE
Q 047891 88 KVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVM 167 (551)
Q Consensus 88 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvm 167 (551)
.+|+..|+=.+.| - .-.+++-++.++++||+||-+.. | | .+.-.++++.++++||+...++
T Consensus 87 ~~plv~m~Y~Npi------~-~~G~e~f~~~~~~aGvdgviipD-----l---p----~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 87 NIPIGLLTYYNLI------F-RKGVEEFYAKCKEVGVDGVLVAD-----L---P----LEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CCCEEEEEeccHH------h-hhhHHHHHHHHHHcCCCEEEECC-----C---C----hHHHHHHHHHHHHCCCcEEEEE
Confidence 5676677655432 1 35678889999999999999983 2 2 2456789999999999996555
Q ss_pred ee
Q 047891 168 SF 169 (551)
Q Consensus 168 sF 169 (551)
+-
T Consensus 148 ~P 149 (256)
T TIGR00262 148 AP 149 (256)
T ss_pred CC
Confidence 54
No 79
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=63.85 E-value=18 Score=35.82 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccC-CCccccch--hHHHHHHHHHHcCCeEEEE
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKD-GPLNYNWE--GYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~-~p~~YdWs--~Y~~l~~mv~~~GLKvqvv 166 (551)
-.++..|+.++++|+++|++.+- +.. .....+|+ .-+++.++++++||++..+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 46889999999999999999532 211 12234564 3678999999999999644
No 80
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=63.29 E-value=8.8 Score=39.64 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHcCCeEEEEEeeeccCC
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKHGLKLQVVMSFHQCGG 174 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGG 174 (551)
.+.++++.++|+++|.+..=|+.-.--+|..|. +-+++++++-+++. .++ .|-||.
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~----~~i--lH~cG~ 241 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL----PTI--LHICGD 241 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC----CcE--EEECCC
Confidence 345566778999999888877642222455555 88999999998875 233 577965
No 81
>PRK12313 glycogen branching enzyme; Provisional
Probab=61.76 E-value=18 Score=41.18 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=47.4
Q ss_pred cceEEEeecceec-CCCcccCHHHHHHHH-HHHHHcCcceEEE-eeeeeccccCCCccccc-----------------hh
Q 047891 89 VPVFVMLPLDTLS-NSGHLNKPRAMNASL-MALKSAGVEGVMV-DAWWGLVEKDGPLNYNW-----------------EG 148 (551)
Q Consensus 89 vpv~VMlPLd~V~-~~~~~~~~~~~~~~L-~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdW-----------------s~ 148 (551)
.-+|-+-+=+--. .++..-+-+.+...| ..||++||+.|.+ +|+ | .|...+| ..
T Consensus 148 ~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d 221 (633)
T PRK12313 148 ISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPED 221 (633)
T ss_pred ceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHH
Confidence 3455555443211 223334457777775 9999999999985 332 2 1222333 34
Q ss_pred HHHHHHHHHHcCCeEEEEEee
Q 047891 149 YAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 149 Y~~l~~mv~~~GLKvqvvmsF 169 (551)
+++|++.|++.||+|..=+-+
T Consensus 222 ~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 222 FMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHCCCEEEEEECC
Confidence 899999999999999444444
No 82
>PLN02808 alpha-galactosidase
Probab=61.71 E-value=16 Score=39.97 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=46.0
Q ss_pred CHHHHHHHHHH-----HHHcCcceEEEeeeeeccccCCCccccc------hhHHHHHHHHHHcCCeEEE
Q 047891 108 KPRAMNASLMA-----LKSAGVEGVMVDAWWGLVEKDGPLNYNW------EGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 108 ~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~p~~YdW------s~Y~~l~~mv~~~GLKvqv 165 (551)
+++.+.+...+ ||.+|.+.|.||-=|-..++.+.|..-. +|.+.|++.|++.|||.=.
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGI 115 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEE
Confidence 57888888887 6999999999998887666555453222 6899999999999999833
No 83
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=61.39 E-value=23 Score=38.96 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=37.5
Q ss_pred HHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 115 SLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 115 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.|..+|++||+||....-- + + ....++-..-.++-++|.++||+|-||=|.
T Consensus 15 ~l~~irQ~G~~giV~al~~-~--p-~gevW~~~~i~~~k~~ie~~GL~~~vvEs~ 65 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I--P-NGEVWEKEEIRKRKEYIESAGLHWSVVESV 65 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C--C-CCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4788999999999976521 1 1 123345556788889999999999988666
No 84
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=60.40 E-value=20 Score=35.14 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEE
Q 047891 111 AMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 111 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvq 164 (551)
-++..|+.++++|++||++.. | ++. ...++.++++++||++.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~---------~--~~~-~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF---------P--YDW-DAEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC---------C--ccC-CHHHHHHHHHHcCCeEE
Confidence 588899999999999999842 1 122 25778889999999983
No 85
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=59.74 E-value=1.6e+02 Score=30.66 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=81.0
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEE---eee--eeccccCC-CccccchhHHHHHHHHHHcCCeEEEEEee---------
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMV---DAW--WGLVEKDG-PLNYNWEGYAELIQMVQKHGLKLQVVMSF--------- 169 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~v---dVW--WGiVE~~~-p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF--------- 169 (551)
.+-..+.+++.+..|...|.+.+++ |-+ -|.-|-.. .+.|.=+-++++.+.|++.|+.|+|-+-+
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~ 91 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILK 91 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHh
Confidence 5666899999999999999999976 322 44444322 68888899999999999999999776433
Q ss_pred ----eccCCCCC---CCCccCCCh---hhHHhhhcCCCeEEeCCCCCcCccccccccCcccccC---------CCChhHH
Q 047891 170 ----HQCGGNVG---DSCTIPLPP---WVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLR---------GRTPIQV 230 (551)
Q Consensus 170 ----HqCGGNVG---D~~~IpLP~---WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~---------GRTpiq~ 230 (551)
++.. .++ +.-++.-|. .|.+..++-=++ ....++-+|+||..-+. .++..+.
T Consensus 92 ~~~~~~l~-~~~~~~~~l~~~~~~t~~fi~~li~ev~~~--------f~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l 162 (301)
T cd06565 92 HPEFRHLR-EVDDPPQTLCPGEPKTYDFIEEMIRQVLEL--------HPSKYIHIGMDEAYDLGRGRSLRKHGNLGRGEL 162 (301)
T ss_pred Cccccccc-ccCCCCCccCCCChhHHHHHHHHHHHHHHh--------CCCCeEEECCCcccccCCCHHHHHhcCCCHHHH
Confidence 1000 000 001111111 010000000001 01478999999998652 4456677
Q ss_pred HHHHHHHHHHHHhh
Q 047891 231 YSDYMRSFRERFRD 244 (551)
Q Consensus 231 Y~dfm~SF~~~f~~ 244 (551)
|.+|++...+...+
T Consensus 163 ~~~~~~~v~~~v~~ 176 (301)
T cd06565 163 YLEHLKKVLKIIKK 176 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777665
No 86
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=59.59 E-value=11 Score=39.62 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHc-CcceEEEeeeeec-----cccCCCccccchhHHHHHHHHHHcC-CeEEEEEeeeccCC
Q 047891 119 LKSA-GVEGVMVDAWWGL-----VEKDGPLNYNWEGYAELIQMVQKHG-LKLQVVMSFHQCGG 174 (551)
Q Consensus 119 LK~~-GVdGV~vdVWWGi-----VE~~~p~~YdWs~Y~~l~~mv~~~G-LKvqvvmsFHqCGG 174 (551)
..++ |+|+|.+--.|+- +.++-=.+|-|-+++++++-+++.| .. ..+|.||-
T Consensus 164 qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~p----iilH~cG~ 222 (321)
T cd03309 164 RIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSAL----IVHHSCGA 222 (321)
T ss_pred HHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCc----eEEEeCCC
Confidence 3334 9999998666764 4443344455999999999999984 32 34589984
No 87
>PRK09989 hypothetical protein; Provisional
Probab=59.17 E-value=24 Score=35.01 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEE
Q 047891 111 AMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 111 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvq 164 (551)
-+...|++++++|.++|++.. +..++ -+++.++++++||++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---------~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---------PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---------cccCC---HHHHHHHHHHcCCcEE
Confidence 578899999999999999942 22234 3578888999999983
No 88
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=58.83 E-value=12 Score=36.93 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEE
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvv 166 (551)
..+.+...++|+|+|.+=++|+.+.+ +...+...--.++.+.|+++|||+.+-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~-~~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS-GNEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT-THHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccc-ccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67888899999999999999999887 567777778888888999999998443
No 89
>PLN02389 biotin synthase
Probab=58.39 E-value=22 Score=38.50 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCC-------ccccchhHHHHHHHHHHcCCeE
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGP-------LNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
+.+|++||++|++.+.+. +|. .| ..-+|+.+.+.++.+++.|+++
T Consensus 178 ~E~l~~LkeAGld~~~~~-----LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHN-----LDT-SREYYPNVITTRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEee-----ecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 578999999999999884 553 12 1238999999999999999988
No 90
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=57.56 E-value=43 Score=36.14 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=53.8
Q ss_pred CcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEE
Q 047891 88 KVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVM 167 (551)
Q Consensus 88 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvm 167 (551)
+-|+++-.| |.+.+.+.+...-+.||++||..+.-..|==..-+.+-+-..+.+|+.|.+.+++.||.+ +-
T Consensus 117 ~~~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~--~t 187 (360)
T PRK12595 117 GNQSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAV--IS 187 (360)
T ss_pred CCeeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCE--EE
Confidence 345555555 567889999999999999999999876663222222334456789999999999999998 44
Q ss_pred eee
Q 047891 168 SFH 170 (551)
Q Consensus 168 sFH 170 (551)
+.|
T Consensus 188 ~v~ 190 (360)
T PRK12595 188 EIV 190 (360)
T ss_pred eeC
Confidence 443
No 91
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=57.32 E-value=36 Score=38.28 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=48.6
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc-------------cchhHHHHHHHHHHcCCeEEEEEeeecc
Q 047891 106 LNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY-------------NWEGYAELIQMVQKHGLKLQVVMSFHQC 172 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKvqvvmsFHqC 172 (551)
.-+-+.+...|..||++||++|-+.--.-.-+. ...| ....+++|++.|++.|+||..=+-+.-|
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 356789999999999999999977544322111 1234 3456899999999999999777777656
Q ss_pred C
Q 047891 173 G 173 (551)
Q Consensus 173 G 173 (551)
+
T Consensus 101 ~ 101 (543)
T TIGR02403 101 S 101 (543)
T ss_pred c
Confidence 4
No 92
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=56.25 E-value=30 Score=34.81 Aligned_cols=63 Identities=22% Similarity=0.371 Sum_probs=45.7
Q ss_pred CcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEE
Q 047891 88 KVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVM 167 (551)
Q Consensus 88 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvm 167 (551)
.+|+.+|.=++.+- ...+++-++.++++|++||.++-- | + ....++++.++++|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~--~--ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P--P--EEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C--H--HHHHHHHHHHHHcCCcEEEEe
Confidence 57888885544321 233577799999999999999521 1 1 356789999999999997766
Q ss_pred ee
Q 047891 168 SF 169 (551)
Q Consensus 168 sF 169 (551)
+-
T Consensus 137 ~P 138 (242)
T cd04724 137 AP 138 (242)
T ss_pred CC
Confidence 64
No 93
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=55.51 E-value=28 Score=36.02 Aligned_cols=173 Identities=25% Similarity=0.346 Sum_probs=100.7
Q ss_pred CCcceEEEeec---ceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeE
Q 047891 87 NKVPVFVMLPL---DTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 87 ~~vpv~VMlPL---d~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
..+|||+|.== |-|-++ ...+.+..+.+..|++|++||.+.+- ..+|+.|=.-.++|.+.+. ||.|
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~---~E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSD---DELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccCh---HHHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCce
Confidence 58999999732 233232 23478999999999999999998764 4699999999999998887 5555
Q ss_pred EEEEeeeccCCCCCCCCccCCCh--hhHHhhhcCCCeEEeCCCCCcC---------ccccccccCccccc--CCCChhHH
Q 047891 164 QVVMSFHQCGGNVGDSCTIPLPP--WVLEEISKNPDLVYTDKSGRRN---------PEYISLGCDTIPLL--RGRTPIQV 230 (551)
Q Consensus 164 qvvmsFHqCGGNVGD~~~IpLP~--WV~~~~~~~PDi~ytD~~G~rn---------~E~lSlg~D~~pvl--~GRTpiq~ 230 (551)
--=++|-.|- + |+.. |+.+.|= +=..| +|.+. ++.+..+-+.+-++ .|-+|
T Consensus 119 TFHrAFD~~~-------d-~~~ale~li~~Gv---~RILT--sGg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~--- 182 (241)
T COG3142 119 TFHRAFDECP-------D-PLEALEQLIELGV---ERILT--SGGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRA--- 182 (241)
T ss_pred eeehhhhhcC-------C-HHHHHHHHHHCCC---cEEec--CCCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCH---
Confidence 4467775552 1 3332 5543321 11222 33332 22233333333333 23342
Q ss_pred HHHHHHHHHHHHhhhhcC-ceeEEEecccCCCCcCCCCCCCCCCCCccCCCccc-ccccHHHHHHHHHHHH
Q 047891 231 YSDYMRSFRERFRDYLGD-VVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEF-QCYDKYMRASLKASAE 299 (551)
Q Consensus 231 Y~dfm~SF~~~f~~~l~~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~PGiGEF-QCYDky~~~sl~~~a~ 299 (551)
++++.|... -|+|+-.+.+- ++||-.--...+.=.+ .+++ +|=|.-+.+.++..++
T Consensus 183 ---------~N~~~l~~~tg~~e~H~s~~~--~~~~~~~~~~m~~~~~--~~~~~~~td~~~v~~~~~~l~ 240 (241)
T COG3142 183 ---------ENIAELVLLTGVTEVHGSAGV--EMRYRNPGSSMGADDF--ADEYIYDTDGAAVAEMKAILE 240 (241)
T ss_pred ---------HHHHHHHHhcCchhhhhcccc--cccccCccCccccccc--cccccccCcHHHHHHHHHHhc
Confidence 344444222 55666555554 7777554333332222 1222 7888888888877654
No 94
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=55.25 E-value=33 Score=37.74 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc---c-------------------chhHHHHHHHHHHcCCeEEE
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY---N-------------------WEGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---d-------------------Ws~Y~~l~~mv~~~GLKvqv 165 (551)
.++.|...|..||.+||++|-+.-.+--........| | ..-+++|++.|++.|+||.+
T Consensus 20 ~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 20 LWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 3678999999999999999987654322211111222 2 23488999999999999988
Q ss_pred EEeeeccCC
Q 047891 166 VMSFHQCGG 174 (551)
Q Consensus 166 vmsFHqCGG 174 (551)
=+-|=-|++
T Consensus 100 D~V~NH~~~ 108 (479)
T PRK09441 100 DVVLNHKAG 108 (479)
T ss_pred EECcccccC
Confidence 787866665
No 95
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=54.39 E-value=58 Score=33.36 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHh-
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEE- 191 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~- 191 (551)
..+|+.....||+.|.+-+ ...+++...+.++.+++.|+++.+-+.. ..-.-|..+.+.
T Consensus 85 ~~~l~~a~~~gv~~iri~~----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~----------a~~~~~~~~~~~~ 144 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF----------HKHEFDEALPLIKAIKEKGYEVFFNLMA----------ISGYSDEELLELL 144 (266)
T ss_pred HHHHHHHhcCCcCEEEEec----------ccccHHHHHHHHHHHHHCCCeEEEEEEe----------ecCCCHHHHHHHH
Confidence 3467888899999999865 1237888999999999999998766555 111346777663
Q ss_pred ---hhcCCC-eEEeCCCCCcCc
Q 047891 192 ---ISKNPD-LVYTDKSGRRNP 209 (551)
Q Consensus 192 ---~~~~PD-i~ytD~~G~rn~ 209 (551)
.+..+| |.+.|-.|.-++
T Consensus 145 ~~~~~~g~~~i~l~DT~G~~~P 166 (266)
T cd07944 145 ELVNEIKPDVFYIVDSFGSMYP 166 (266)
T ss_pred HHHHhCCCCEEEEecCCCCCCH
Confidence 233455 778888886443
No 96
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.33 E-value=53 Score=34.00 Aligned_cols=66 Identities=18% Similarity=0.066 Sum_probs=47.6
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeee
Q 047891 103 SGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 103 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
=|.+.+.+++..--++||++|+..+....|==..-+.+-+-+-.++|+.+.+.+++.||.+ +-.+|
T Consensus 34 PCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~--~te~~ 99 (266)
T PRK13398 34 PCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPV--VTEVM 99 (266)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 3556889999999999999999988888663111111111122678999999999999998 55554
No 97
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=54.31 E-value=22 Score=36.81 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=48.4
Q ss_pred HHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCCccCCChhhH
Q 047891 115 SLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKH--GLKLQVVMSFHQCGGNVGDSCTIPLPPWVL 189 (551)
Q Consensus 115 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~--GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~ 189 (551)
-.+++.++|+++|.+.-=|+.+ -+|.+|+ +-+++++++-+++. |.++ .|-|||+ + ++-.++.
T Consensus 182 ~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~-----~-~~~~~~~ 248 (335)
T cd00717 182 YLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-----ILFAKGA-----G-GLLEDLA 248 (335)
T ss_pred HHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCC-----H-HHHHHHH
Confidence 3445566999999754435533 3577777 99999999999998 4433 5667753 1 4555555
Q ss_pred HhhhcCCCeEEeCCC
Q 047891 190 EEISKNPDLVYTDKS 204 (551)
Q Consensus 190 ~~~~~~PDi~ytD~~ 204 (551)
+. ..|++-.|..
T Consensus 249 ~~---~~~~~s~d~~ 260 (335)
T cd00717 249 QL---GADVVGLDWR 260 (335)
T ss_pred hc---CCCEEEeCCC
Confidence 33 3577766654
No 98
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=54.13 E-value=13 Score=26.93 Aligned_cols=18 Identities=44% Similarity=0.628 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCcceEEEe
Q 047891 113 NASLMALKSAGVEGVMVD 130 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vd 130 (551)
.+..++|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 345577888999999987
No 99
>PRK04302 triosephosphate isomerase; Provisional
Probab=54.01 E-value=31 Score=34.02 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=35.8
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeee
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
..++.||++|+++|.++- +++...+..-.++++.+++.||.+ |++.|
T Consensus 76 ~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~--I~~v~ 122 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLES--VVCVN 122 (223)
T ss_pred hHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeE--EEEcC
Confidence 458999999999998873 333444555788999999999988 66554
No 100
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=53.38 E-value=24 Score=36.33 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=46.7
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCCc---cccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHH
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGPL---NYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLE 190 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~---~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~ 190 (551)
.-++++.++|+|+|.+.-=++ .--+|. +|-+-+++++++.+++.|.+ ..-+|-||-. -++=.++.
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~--~~isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG~~------~~~~~~l~- 253 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSG--SLISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICGNT------TPILDDLA- 253 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTG--GGS-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETTHG-------GGHHHHH-
T ss_pred HHHHHHHHhCCCccccccccc--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECCch------HHHHHHHH-
Confidence 345667799999997666333 222344 67899999999999999994 3357889741 12223333
Q ss_pred hhhcCCCeEEeCCC
Q 047891 191 EISKNPDLVYTDKS 204 (551)
Q Consensus 191 ~~~~~PDi~ytD~~ 204 (551)
+...|++-.|..
T Consensus 254 --~~g~d~~~~~~~ 265 (343)
T PF01208_consen 254 --DLGADVLSVDEK 265 (343)
T ss_dssp --TSS-SEEEE-TT
T ss_pred --hcCCCEEEEcCC
Confidence 344566666543
No 101
>PRK10150 beta-D-glucuronidase; Provisional
Probab=52.83 E-value=3.9e+02 Score=30.32 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=35.6
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEE
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqv 165 (551)
.+.+++.++|+.||++|++.|++- .. | .-.++.++|-+.||-|..
T Consensus 310 ~~~~~~~~d~~l~K~~G~N~vR~s---h~-----p------~~~~~~~~cD~~GllV~~ 354 (604)
T PRK10150 310 LDEVLNVHDHNLMKWIGANSFRTS---HY-----P------YSEEMLDLADRHGIVVID 354 (604)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEec---cC-----C------CCHHHHHHHHhcCcEEEE
Confidence 467889999999999999999982 11 1 114788999999998854
No 102
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=52.75 E-value=2.5e+02 Score=29.34 Aligned_cols=87 Identities=11% Similarity=0.265 Sum_probs=57.7
Q ss_pred cCHHHHHHHHHHHHHc--CcceEEEee-eeeccccCCCccccch-----hHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 047891 107 NKPRAMNASLMALKSA--GVEGVMVDA-WWGLVEKDGPLNYNWE-----GYAELIQMVQKHGLKLQVVMSFHQCGGNVGD 178 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~--GVdGV~vdV-WWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD 178 (551)
.+.+.+..-++.+++. -+|.|.+|. ||+ ..+-+.|+|. --+++++-+++.|+|| |+..|-. |.
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv--~~~i~P~---v~- 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAEL--MISIWPT---FG- 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEE--EEEecCC---cC-
Confidence 5678889999999987 679999996 553 2121256665 5788999999999999 4444411 11
Q ss_pred CCccCCChhhHHhhhcCCCeEEeCCCCCcC
Q 047891 179 SCTIPLPPWVLEEISKNPDLVYTDKSGRRN 208 (551)
Q Consensus 179 ~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn 208 (551)
..-|. -+++.+. +.++++..|...
T Consensus 92 ---~~~~~--y~e~~~~-g~~v~~~~g~~~ 115 (319)
T cd06591 92 ---PETEN--YKEMDEK-GYLIKTDRGPRV 115 (319)
T ss_pred ---CCChh--HHHHHHC-CEEEEcCCCCee
Confidence 11122 3455554 889999888743
No 103
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=52.21 E-value=31 Score=42.55 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-ee-eeccc-cC----------CCccccch-------------------------hH
Q 047891 108 KPRAMNASLMALKSAGVEGVMVD-AW-WGLVE-KD----------GPLNYNWE-------------------------GY 149 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vd-VW-WGiVE-~~----------~p~~YdWs-------------------------~Y 149 (551)
+-.+|...|..||++||+.|.+- |+ .+.+. .. +...|+|- .+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 45788889999999999999753 33 32221 10 12345554 38
Q ss_pred HHHHHHHHHcCCeEEEEEee
Q 047891 150 AELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 150 ~~l~~mv~~~GLKvqvvmsF 169 (551)
+++++.++++||+|..=+-|
T Consensus 558 K~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHCCCEEEEeccc
Confidence 89999999999999554444
No 104
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=52.11 E-value=29 Score=34.37 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeE
Q 047891 111 AMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 111 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
.++..|++++++|.+||++. + |.. ...+++.++++++||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~---~------~~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFM---F------PYD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEc---C------CCC---CCHHHHHHHHHHcCCcE
Confidence 48888999999999999992 2 111 24788888999999998
No 105
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=51.62 E-value=8.1 Score=37.88 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeE
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
++.++++|.+||+.||..|-+ ++|...=..|... .|.+.++++||++
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~~~Gi~~ 103 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQARGIAW 103 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHHHTT-EE
T ss_pred cchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHHHcCCEE
Confidence 578999999999999999865 6777555566655 4568999999987
No 106
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=51.19 E-value=78 Score=37.45 Aligned_cols=125 Identities=18% Similarity=0.295 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeccccCCCccccchhH----HHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCC
Q 047891 110 RAMNASLMALKSAGVEGVMVDAW-WGLVEKDGPLNYNWEGY----AELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPL 184 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y----~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpL 184 (551)
.+++..+++|.++|+..|-+|.= | .|.-....-+|..| -+.+..+-+ |++-...+++|-|=||..+ | +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal--~e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i-~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPAL--REGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I-I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchh--hhcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-H
Confidence 56778889999999999999986 6 34323344567554 455555555 6643446799999998765 1 2
Q ss_pred ChhhHHhhhcCCCeEEeCCCCCcCccccccccC----cc--c-ccCCCChhHHHHHHHHHHHHHHhhhh
Q 047891 185 PPWVLEEISKNPDLVYTDKSGRRNPEYISLGCD----TI--P-LLRGRTPIQVYSDYMRSFRERFRDYL 246 (551)
Q Consensus 185 P~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D----~~--p-vl~GRTpiq~Y~dfm~SF~~~f~~~l 246 (551)
|. +.+.+-|.++.+-. +.+.|-|...-+ +. | |.+.++|-=---|-++.-..+...++
T Consensus 654 ~~----i~~l~vD~~~lE~~-rs~~e~L~~~~~~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v 717 (758)
T PRK05222 654 DA----IAALDADVISIETS-RSDMELLDAFEDFGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVI 717 (758)
T ss_pred HH----HHhCCCCEEEEEec-CCCchhHHHhhccCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 22 23677887777622 222444443322 11 1 34666664444455555555555554
No 107
>PRK10785 maltodextrin glucosidase; Provisional
Probab=51.16 E-value=45 Score=38.02 Aligned_cols=111 Identities=19% Similarity=0.295 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc-------------chhHHHHHHHHHHcCCeEEEEEeeeccCC
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN-------------WEGYAELIQMVQKHGLKLQVVMSFHQCGG 174 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGG 174 (551)
|.+.+.+.|-.||++||++|-+-= +.|..+--.|+ ...+++|++.|++.|+||..=+-|.-||.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~P---if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNP---IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 568999999999999999998754 23332333343 35789999999999999977777755553
Q ss_pred CCCCCCccCCChhhHHhhh-----------cCCCeEEeCCCCCcCcccccc-ccCcccccCCCChhHHHHHHHH
Q 047891 175 NVGDSCTIPLPPWVLEEIS-----------KNPDLVYTDKSGRRNPEYISL-GCDTIPLLRGRTPIQVYSDYMR 236 (551)
Q Consensus 175 NVGD~~~IpLP~WV~~~~~-----------~~PDi~ytD~~G~rn~E~lSl-g~D~~pvl~GRTpiq~Y~dfm~ 236 (551)
+ -.|+..... ...|-++-+..|. +.+| +++.+|-|.=.. +..+++|.
T Consensus 254 ----~-----~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~----~~~w~g~~~lPdLN~~n--p~v~~~l~ 312 (598)
T PRK10785 254 ----S-----HPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR----ALDWLGYASLPKLDFQS--EEVVNEIY 312 (598)
T ss_pred ----C-----CHHHHHhhccccccccCCCCCcceeeEECCCCC----cCCcCCCCcCccccCCC--HHHHHHHH
Confidence 1 127654321 1123344444443 2333 457788776444 45666664
No 108
>PLN02692 alpha-galactosidase
Probab=51.11 E-value=29 Score=38.33 Aligned_cols=56 Identities=27% Similarity=0.376 Sum_probs=41.8
Q ss_pred CHHHHHHHHHH-----HHHcCcceEEEeeeeeccccCCCccccc------hhHHHHHHHHHHcCCeE
Q 047891 108 KPRAMNASLMA-----LKSAGVEGVMVDAWWGLVEKDGPLNYNW------EGYAELIQMVQKHGLKL 163 (551)
Q Consensus 108 ~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~p~~YdW------s~Y~~l~~mv~~~GLKv 163 (551)
+++.+.+...+ ||++|.+.|.||.=|-..+++..|..-. +|.+.|++.|++.|||.
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf 137 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL 137 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce
Confidence 56777776665 4888999999998665444433343333 68999999999999998
No 109
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=50.69 E-value=90 Score=32.80 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=57.1
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeccccCCCccccch-----hHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 047891 106 LNKPRAMNASLMALKSAG--VEGVMVDAWWGLVEKDGPLNYNWE-----GYAELIQMVQKHGLKLQVVMSFHQCGGNVGD 178 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD 178 (551)
.++.+.+.+-++.+++.| +|+|.+|.=|.. +-+.|+|. .-+++++-.++.|+|+ ++..|
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~--~~~~~-------- 85 (339)
T cd06604 20 YYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKV--VTIID-------- 85 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEE--EEEEe--------
Confidence 346788888899999876 588888866642 23335444 3679999999999999 44454
Q ss_pred CCccCC-C-hhhHHhhhcCCCeEEeCCCCC
Q 047891 179 SCTIPL-P-PWVLEEISKNPDLVYTDKSGR 206 (551)
Q Consensus 179 ~~~IpL-P-~WV~~~~~~~PDi~ytD~~G~ 206 (551)
|.|.. | .-+-+++.++ +.|.++.+|.
T Consensus 86 -P~v~~~~~~~~~~e~~~~-g~~v~~~~g~ 113 (339)
T cd06604 86 -PGVKVDPGYDVYEEGLEN-DYFVKDPDGE 113 (339)
T ss_pred -CceeCCCCChHHHHHHHC-CeEEECCCCC
Confidence 22322 1 1234556555 8899998885
No 110
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=50.65 E-value=50 Score=36.98 Aligned_cols=66 Identities=11% Similarity=0.284 Sum_probs=48.2
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCC-Ccccc-------------chhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 106 LNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDG-PLNYN-------------WEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p~~Yd-------------Ws~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
.-|-+.|.+.|..||++||++|-+-=. .|..+ ...|+ ...+++|++.|++.|+||..=+-+.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi---~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPF---FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCC---cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 456789999999999999999976543 23211 22332 46789999999999999977677765
Q ss_pred cCC
Q 047891 172 CGG 174 (551)
Q Consensus 172 CGG 174 (551)
++.
T Consensus 101 ~s~ 103 (539)
T TIGR02456 101 TSD 103 (539)
T ss_pred CCC
Confidence 543
No 111
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=50.57 E-value=51 Score=34.54 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeecccc----CCCccccchhHHHHHHHHHHcCCeEEEEEeeecc
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEK----DGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQC 172 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqC 172 (551)
+-+..++-..-..+.|++.|.||..|---+. +--..+.+....+|++.+++.|.+| +|-.|.-
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi--~lw~~~~ 96 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI--WLWYHSE 96 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE--EEEEECC
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE--EEEEeCC
Confidence 4577788888889999999999999975332 1125677899999999999999999 6666644
No 112
>PRK15452 putative protease; Provisional
Probab=50.47 E-value=23 Score=39.25 Aligned_cols=39 Identities=8% Similarity=0.208 Sum_probs=30.1
Q ss_pred CcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEee
Q 047891 88 KVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDA 131 (551)
Q Consensus 88 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdV 131 (551)
+++|||.+|.- ..+ .+-+.+...|+.|+++|||||.|.-
T Consensus 59 g~kvyvt~n~i--~~e---~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 59 GKKFYVVVNIA--PHN---AKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred CCEEEEEecCc--CCH---HHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 78999998833 222 2346788889999999999999864
No 113
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=49.97 E-value=2.4e+02 Score=29.34 Aligned_cols=131 Identities=14% Similarity=0.270 Sum_probs=80.2
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeee----eec--------ccc-------CCCccccchhHHHHHHHHHHcCCeEEE
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAW----WGL--------VEK-------DGPLNYNWEGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVW----WGi--------VE~-------~~p~~YdWs~Y~~l~~mv~~~GLKvqv 165 (551)
.+-..+.|++.+..|...+.+.+.+-.= |-+ .+. ...+.|.=+-++++++.|++.|+.|+|
T Consensus 11 ~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 11 HFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred cCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEE
Confidence 4667899999999999999988765443 432 222 124578889999999999999999977
Q ss_pred EEee--ec-----------cCC-------CCCCCCccCCCh---hhHHhhhcCCCeEEeCCCCCcCccccccccCccccc
Q 047891 166 VMSF--HQ-----------CGG-------NVGDSCTIPLPP---WVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLL 222 (551)
Q Consensus 166 vmsF--Hq-----------CGG-------NVGD~~~IpLP~---WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl 222 (551)
-+-+ |. |.. ..-+.-++.-|. .|.+..+.-=++| ...++-+|+||.+..
T Consensus 91 EiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf--------~~~~iHiGgDE~~~~ 162 (303)
T cd02742 91 EIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELF--------PDRYLHIGGDEAHFK 162 (303)
T ss_pred eccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhC--------CCCeEEecceecCCC
Confidence 6533 11 000 000011111111 1111111110111 267999999999854
Q ss_pred CCCChhHHHHHHHHHHHHHHhhh
Q 047891 223 RGRTPIQVYSDYMRSFRERFRDY 245 (551)
Q Consensus 223 ~GRTpiq~Y~dfm~SF~~~f~~~ 245 (551)
.++.+.|..|++...+..+..
T Consensus 163 --~~~~~l~~~f~~~~~~~v~~~ 183 (303)
T cd02742 163 --QDRKHLMSQFIQRVLDIVKKK 183 (303)
T ss_pred --CCHHHHHHHHHHHHHHHHHHc
Confidence 566788888888777776653
No 114
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=49.93 E-value=30 Score=35.98 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=47.1
Q ss_pred HHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCCccCCChhhH
Q 047891 115 SLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKH--GLKLQVVMSFHQCGGNVGDSCTIPLPPWVL 189 (551)
Q Consensus 115 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~--GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~ 189 (551)
-++++.++|+++|.+.-=|+-+ -+|.+|+ +-+++++++-+++. +.. | .|-|||. -++-.++.
T Consensus 185 ~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~p~~k~i~~~i~~~~~~~~---i--lh~cg~~------~~~~~~~~ 251 (338)
T TIGR01464 185 YLVEQVKAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKKIIEEVKARLPNVP---V--ILFAKGA------GHLLEELA 251 (338)
T ss_pred HHHHHHHcCCCEEEEECCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCC---E--EEEeCCc------HHHHHHHH
Confidence 3444667999998864435533 3577777 99999999999987 432 3 4557752 13444454
Q ss_pred HhhhcCCCeEEeCCC
Q 047891 190 EEISKNPDLVYTDKS 204 (551)
Q Consensus 190 ~~~~~~PDi~ytD~~ 204 (551)
+...|++-.|..
T Consensus 252 ---~~~~~~~s~d~~ 263 (338)
T TIGR01464 252 ---ETGADVVGLDWT 263 (338)
T ss_pred ---hcCCCEEEeCCC
Confidence 334577766654
No 115
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=49.81 E-value=67 Score=38.82 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc-------------cchhHHHHHHHHHHcCCeEEEEEeeeccC
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY-------------NWEGYAELIQMVQKHGLKLQVVMSFHQCG 173 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKvqvvmsFHqCG 173 (551)
-+.+.+.|..|+++||+.|-+.--+-.... +...| ..+.++++++.++++||+|..=+-+--|+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~g-s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPG-STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCC-CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 578999999999999999977554321111 12222 35789999999999999996666664444
No 116
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.34 E-value=1e+02 Score=32.26 Aligned_cols=86 Identities=14% Similarity=0.267 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCc--ceEEEeeeeeccccCCCccccch-----hHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc
Q 047891 109 PRAMNASLMALKSAGV--EGVMVDAWWGLVEKDGPLNYNWE-----GYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT 181 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GV--dGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~ 181 (551)
.+.+..-++.+++.|+ |.|.+|.=|-.-+...-+.|+|. --+++++-+++.|+|+ +++.|-+=.. |
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~--~~~i~P~i~~--~--- 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRL--APNIKPGLLQ--D--- 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEE--EEEeCCcccC--C---
Confidence 6778888889998774 78888743322222122345554 3678889999999999 5566543211 1
Q ss_pred cCCChhhHHhhhcCCCeEEeCCCCC
Q 047891 182 IPLPPWVLEEISKNPDLVYTDKSGR 206 (551)
Q Consensus 182 IpLP~WV~~~~~~~PDi~ytD~~G~ 206 (551)
=| .-+++.+. +.|.++.+|.
T Consensus 101 --~~--~y~e~~~~-g~~v~~~~g~ 120 (317)
T cd06599 101 --HP--RYKELKEA-GAFIKPPDGR 120 (317)
T ss_pred --CH--HHHHHHHC-CcEEEcCCCC
Confidence 12 24556555 7899988876
No 117
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=48.98 E-value=56 Score=33.25 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=47.1
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeecccc-CCC--ccccchhHHHHHHHHHHcCCeEEEEEeeeccC
Q 047891 106 LNKPRAMNASLMALKSAGVEGVMVDAWWGLVEK-DGP--LNYNWEGYAELIQMVQKHGLKLQVVMSFHQCG 173 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~-~~p--~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCG 173 (551)
+++++.+++.++.+++.|++.|-+-.=++..-+ ..+ ..++-...+++++.+++.|+++ ..|.++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v----~~H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYV----AAHAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEE----EEEeCC
Confidence 567899999999999999999977653332111 111 2577788999999999999976 467543
No 118
>PRK07360 FO synthase subunit 2; Reviewed
Probab=48.91 E-value=17 Score=38.86 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCcceEEEeeeeecc-c--------cCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 112 MNASLMALKSAGVEGVMVDAWWGLV-E--------KDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~vdVWWGiV-E--------~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.+..|++||++|++.+. +.- | .-.|++-.+..|.+.++++++.||++-.-|=|
T Consensus 162 ~~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred HHHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 36789999999999994 211 1 11477888888899999999999999443333
No 119
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=48.89 E-value=53 Score=37.16 Aligned_cols=66 Identities=17% Similarity=0.375 Sum_probs=46.1
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc-------------chhHHHHHHHHHHcCCeEEEEEeeecc
Q 047891 106 LNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN-------------WEGYAELIQMVQKHGLKLQVVMSFHQC 172 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mv~~~GLKvqvvmsFHqC 172 (551)
.-|.+.+.+.|..||++||++|-+.=-+-. +.....|+ .+.+++|++.++++|+||..=+-+--|
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~ 106 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHT 106 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 456789999999999999999977443210 10112232 346899999999999999666666444
Q ss_pred C
Q 047891 173 G 173 (551)
Q Consensus 173 G 173 (551)
+
T Consensus 107 s 107 (551)
T PRK10933 107 S 107 (551)
T ss_pred c
Confidence 3
No 120
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.17 E-value=2e+02 Score=30.49 Aligned_cols=92 Identities=12% Similarity=0.165 Sum_probs=56.6
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeccccCCCccccc-----hhH--HHHHHHHHHcCCeEEEEEeeeccCCCC
Q 047891 106 LNKPRAMNASLMALKSAG--VEGVMVDAWWGLVEKDGPLNYNW-----EGY--AELIQMVQKHGLKLQVVMSFHQCGGNV 176 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdW-----s~Y--~~l~~mv~~~GLKvqvvmsFHqCGGNV 176 (551)
..+.+.+.+-++.+++.| +|+|.+|+=|.. .-+.|+| .-- +++++-+++.|+|| ++..|-.-. +
T Consensus 20 y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~--~~~i~P~v~-~ 92 (339)
T cd06602 20 YKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHY--VPILDPAIS-A 92 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEE--EEEEeCccc-c
Confidence 456788888999998866 588889865531 1234443 345 88999999999999 555542211 1
Q ss_pred CCCCccCCChhhHHhhhcCCCeEEeCCCCCcC
Q 047891 177 GDSCTIPLPPWVLEEISKNPDLVYTDKSGRRN 208 (551)
Q Consensus 177 GD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn 208 (551)
.. ..-.-| +.+++.+. +.+.++.+|...
T Consensus 93 ~~-~~~~~~--~~~e~~~~-g~~v~~~~g~~~ 120 (339)
T cd06602 93 NE-PTGSYP--PYDRGLEM-DVFIKNDDGSPY 120 (339)
T ss_pred Cc-CCCCCH--HHHHHHHC-CeEEECCCCCEE
Confidence 00 000012 23445444 788999888643
No 121
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=48.14 E-value=58 Score=31.97 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeecccc------CCCccccchhHHHHHHHHHHcCCeEEEEE-eeeccCCCCCCCCccCCC
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEK------DGPLNYNWEGYAELIQMVQKHGLKLQVVM-SFHQCGGNVGDSCTIPLP 185 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~------~~p~~YdWs~Y~~l~~mv~~~GLKvqvvm-sFHqCGGNVGD~~~IpLP 185 (551)
...++.++++|++.|.+-.=-. +. ....+-+++...+.++.+++.|+++++.+ ....| +.-|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~---------~~~~ 145 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS--ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC---------KTDP 145 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC---------CCCH
Confidence 6789999999999999887422 11 01222367788899999999999998887 45544 2233
Q ss_pred hhhHH----hhhcCCC-eEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHh
Q 047891 186 PWVLE----EISKNPD-LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFR 243 (551)
Q Consensus 186 ~WV~~----~~~~~PD-i~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~ 243 (551)
..+.+ ..+..+| |.+.|-.|. -|| +.+.++++.+++.+.
T Consensus 146 ~~l~~~~~~~~~~g~~~i~l~Dt~G~------------------~~P-~~v~~li~~l~~~~~ 189 (265)
T cd03174 146 EYVLEVAKALEEAGADEISLKDTVGL------------------ATP-EEVAELVKALREALP 189 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEechhcCC------------------cCH-HHHHHHHHHHHHhCC
Confidence 44433 3334455 445555444 234 556666666666544
No 122
>PRK09875 putative hydrolase; Provisional
Probab=47.52 E-value=73 Score=33.42 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=47.0
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc
Q 047891 103 SGHLNKPRAMNASLMALKSAGVEGVMVDAW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT 181 (551)
Q Consensus 103 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~ 181 (551)
+..+.+.+.....|+.+|++|+..| ||+= .|+ |+ .-..|.++.++.|+.| |+++ |=-..
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T~~g~------GR----d~~~l~~is~~tgv~I--v~~T-------G~y~~ 86 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEMTNRYM------GR----NAQFMLDVMRETGINV--VACT-------GYYQD 86 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-EecCCCcc------Cc----CHHHHHHHHHHhCCcE--EEcC-------cCCCC
Confidence 4567889999999999999999887 5543 222 22 2467888999999888 7766 11122
Q ss_pred cCCChhhH
Q 047891 182 IPLPPWVL 189 (551)
Q Consensus 182 IpLP~WV~ 189 (551)
.-.|.|+.
T Consensus 87 ~~~p~~~~ 94 (292)
T PRK09875 87 AFFPEHVA 94 (292)
T ss_pred ccCCHHHh
Confidence 34688886
No 123
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=47.02 E-value=1.6e+02 Score=29.66 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=59.5
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHhhh
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEIS 193 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~ 193 (551)
.+++..++.|++.|.+-+-...+ .-..++++.+++.|+++++.++- + ..+ -|..+.+..+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~----------~~~~~~i~~ak~~G~~v~~~~~~--~-------~~~-~~~~~~~~~~ 148 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA----------DVSEQHIGAARKLGMDVVGFLMM--S-------HMA-SPEELAEQAK 148 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH----------HHHHHHHHHHHHCCCeEEEEEEe--c-------cCC-CHHHHHHHHH
Confidence 66788889999999886644432 35788999999999999877742 1 112 3566665332
Q ss_pred ----cCCC-eEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHh
Q 047891 194 ----KNPD-LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFR 243 (551)
Q Consensus 194 ----~~PD-i~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~ 243 (551)
..+| |.+.|-.|. -|| +...++.+.+++++.
T Consensus 149 ~~~~~G~d~i~l~DT~G~------------------~~P-~~v~~lv~~l~~~~~ 184 (263)
T cd07943 149 LMESYGADCVYVTDSAGA------------------MLP-DDVRERVRALREALD 184 (263)
T ss_pred HHHHcCCCEEEEcCCCCC------------------cCH-HHHHHHHHHHHHhCC
Confidence 3344 566676664 345 445567777776543
No 124
>PLN02877 alpha-amylase/limit dextrinase
Probab=46.99 E-value=37 Score=41.34 Aligned_cols=63 Identities=24% Similarity=0.473 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCcceEEE-eee-eecc-ccC-----------------------------CCccccchh----------
Q 047891 111 AMNASLMALKSAGVEGVMV-DAW-WGLV-EKD-----------------------------GPLNYNWEG---------- 148 (551)
Q Consensus 111 ~~~~~L~~LK~~GVdGV~v-dVW-WGiV-E~~-----------------------------~p~~YdWs~---------- 148 (551)
+.-.-|+.||++||..|.+ +|+ .+-| |.. ....|+|-|
T Consensus 374 ~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEg 453 (970)
T PLN02877 374 AGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKG 453 (970)
T ss_pred hHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCc
Confidence 3345688999999999986 666 5443 211 023488866
Q ss_pred --------------HHHHHHHHHHcCCeEEEEEee-eccC
Q 047891 149 --------------YAELIQMVQKHGLKLQVVMSF-HQCG 173 (551)
Q Consensus 149 --------------Y~~l~~mv~~~GLKvqvvmsF-HqCG 173 (551)
++++++-++++||+|..=+-| |...
T Consensus 454 SYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~ 493 (970)
T PLN02877 454 SYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHS 493 (970)
T ss_pred ccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccC
Confidence 899999999999999333333 5443
No 125
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=46.93 E-value=34 Score=35.85 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=48.2
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHcC--CeEEEEEeeeccCCCCCCCCccCCChhh
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKHG--LKLQVVMSFHQCGGNVGDSCTIPLPPWV 188 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~G--LKvqvvmsFHqCGGNVGD~~~IpLP~WV 188 (551)
.-++++.++|+++|.+.-=|+-+ -+|.+|+ +-+.+++++-+++.| .+ |+ |-|||.. ++-.++
T Consensus 190 ~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~---il--h~cg~~~------~~~~~~ 256 (346)
T PRK00115 190 AYLNAQIEAGAQAVQIFDSWAGA--LSPADYREFVLPYMKRIVAELKREHPDVP---VI--LFGKGAG------ELLEAM 256 (346)
T ss_pred HHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCC---EE--EEcCCcH------HHHHHH
Confidence 34555667999999754435543 3577777 999999999999984 33 34 6687532 222344
Q ss_pred HHhhhcCCCeEEeCCC
Q 047891 189 LEEISKNPDLVYTDKS 204 (551)
Q Consensus 189 ~~~~~~~PDi~ytD~~ 204 (551)
. +...|++-.|..
T Consensus 257 ~---~~~~~~is~d~~ 269 (346)
T PRK00115 257 A---ETGADVVGLDWT 269 (346)
T ss_pred H---hcCCCEEeeCCC
Confidence 4 334467766653
No 126
>PRK03906 mannonate dehydratase; Provisional
Probab=46.10 E-value=32 Score=37.57 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=38.1
Q ss_pred HHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 115 SLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 115 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.|..+|++||+||.... -.-.....++-..-.++-++|+++||+|-||=|.
T Consensus 15 ~l~~~rQ~G~~~iv~~l----~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~ 65 (385)
T PRK03906 15 TLEDIRQPGATGIVTAL----HDIPVGEVWPVEEILARKAEIEAAGLEWSVVESV 65 (385)
T ss_pred hHHHHhcCCCCceeecC----CCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 47889999999999763 1111223455666888899999999999998666
No 127
>PLN00196 alpha-amylase; Provisional
Probab=45.74 E-value=69 Score=35.30 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc------c--------hhHHHHHHHHHHcCCeEEEEEeeeccC
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN------W--------EGYAELIQMVQKHGLKLQVVMSFHQCG 173 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd------W--------s~Y~~l~~mv~~~GLKvqvvmsFHqCG 173 (551)
..+.+...|..||++||+.|-+.-= .|..++..|+ - ..+++|++.+++.|+||.+=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~---~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPP---SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 4788999999999999999988742 2333333342 2 258999999999999997666665555
Q ss_pred C
Q 047891 174 G 174 (551)
Q Consensus 174 G 174 (551)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 3
No 128
>PRK14706 glycogen branching enzyme; Provisional
Probab=44.29 E-value=61 Score=37.56 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=42.3
Q ss_pred CcccCHHHHHHHH-HHHHHcCcceEEEeeeeeccccCCCccccchh-----------------HHHHHHHHHHcCCeEEE
Q 047891 104 GHLNKPRAMNASL-MALKSAGVEGVMVDAWWGLVEKDGPLNYNWEG-----------------YAELIQMVQKHGLKLQV 165 (551)
Q Consensus 104 ~~~~~~~~~~~~L-~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mv~~~GLKvqv 165 (551)
+++-.-+.+...| ..||++||+.|++=- +.|- |...+|-+ ++++++.++++||+|..
T Consensus 161 g~~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 161 GWFLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3344566777777 689999999998632 4453 44445543 78999999999999943
Q ss_pred EEee
Q 047891 166 VMSF 169 (551)
Q Consensus 166 vmsF 169 (551)
=+-+
T Consensus 236 D~v~ 239 (639)
T PRK14706 236 DWVP 239 (639)
T ss_pred Eecc
Confidence 3333
No 129
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=44.27 E-value=23 Score=36.92 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCcceEEEe---ee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEEE
Q 047891 113 NASLMALKSAGVEGVMVD---AW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVM 167 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vd---VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvm 167 (551)
+..|+.||++|++.+... +- .-+-+.-.|++..|..|.+.++.++++|+++.+-|
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccee
Confidence 789999999999866310 00 11112223667799999999999999999984433
No 130
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=43.79 E-value=51 Score=32.33 Aligned_cols=66 Identities=23% Similarity=0.226 Sum_probs=48.6
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGD 178 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD 178 (551)
.+...+..+++.+..+|+++|.+-+.++..+ ..+......++.+++++.|+++ |+-.|.=|-.+|+
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~--iie~~~~g~~~~~ 138 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPL--IAWMYPRGPAVKN 138 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCE--EEEEeccCCcccC
Confidence 3456677788999999999998888877432 4567778888999999999998 4444543444444
No 131
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.64 E-value=53 Score=33.88 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=48.0
Q ss_pred CcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEE
Q 047891 88 KVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVM 167 (551)
Q Consensus 88 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvm 167 (551)
+|+||-+-.|--+ .-....+++-|+..|++|++.|+|.. +--...=.-..++++++++.|||+.+=+
T Consensus 54 ~V~v~~GGtl~E~-----~~~q~~~~~Yl~~~k~lGf~~IEiS~--------G~~~i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 54 GIKVYPGGTLFEI-----AHSKGKFDEYLNECDELGFEAVEISD--------GSMEISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred CCeEeCCccHHHH-----HHHhhhHHHHHHHHHHcCCCEEEEcC--------CccCCCHHHHHHHHHHHHhCCCeEeccc
Confidence 7777776422211 11237889999999999999999852 3334455677889999999999995543
No 132
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=42.77 E-value=23 Score=37.18 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCcceEEE---eee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 113 NASLMALKSAGVEGVMV---DAW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~v---dVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
+..|++||++|++.+.. +.. -.+...-.|++..+..+.+.+++++++||++-..|=+
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~ 201 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE
Confidence 68899999999998851 112 1111223466667778899999999999998554444
No 133
>PRK04326 methionine synthase; Provisional
Probab=42.73 E-value=46 Score=34.50 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhh
Q 047891 110 RAMNASLMALKSAGVEGVMVDAW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWV 188 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV 188 (551)
+++...+++|+++|++.|.+|.= |.. .|. ++..+.+.++.+-+ +++.. ...|-|.||.. |.|
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~--~~~~~~~~l~~~~~-~~~~~--v~lH~C~G~~~-------~~~- 223 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPE--DVEIAVEALNRIVK-GINAK--LGLHVCYGDYS-------RIA- 223 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHH--HHHHHHHHHHHHHh-CCCCE--EEEEEeCCCcH-------HHH-
Confidence 56677888999999999999973 543 222 33444444444433 44443 35699988752 111
Q ss_pred HHhhhcCCCeEEeCCC
Q 047891 189 LEEISKNPDLVYTDKS 204 (551)
Q Consensus 189 ~~~~~~~PDi~ytD~~ 204 (551)
....+.+.|.+..|-.
T Consensus 224 ~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 224 PYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHhCCCCEEEEEeC
Confidence 2223566677777764
No 134
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.49 E-value=59 Score=34.97 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCC
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGG 174 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGG 174 (551)
....-+.+.++.+|.|+|.+-|+|+-=+...-..-......++.+-|++.||-+..-+-...-|+
T Consensus 106 ~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~ 170 (340)
T PRK12858 106 LLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKG 170 (340)
T ss_pred ccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCc
Confidence 34445578899999999999999993222111567888899999999999999844222334443
No 135
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=42.43 E-value=24 Score=38.19 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=33.8
Q ss_pred HHHHHHHc-CcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 115 SLMALKSA-GVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 115 ~L~~LK~~-GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.|..+++. ||+||.....+--. ...++-...+++-+.|+++||++-||=|+
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEsv 67 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIESV 67 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES-
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 47778886 99999988865222 23456667888999999999999988665
No 136
>PRK09505 malS alpha-amylase; Reviewed
Probab=42.38 E-value=66 Score=37.69 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-eeeeccc---c--------CCCccc-------------cchhHHHHHHHHHHcCCe
Q 047891 108 KPRAMNASLMALKSAGVEGVMVD-AWWGLVE---K--------DGPLNY-------------NWEGYAELIQMVQKHGLK 162 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vd-VWWGiVE---~--------~~p~~Y-------------dWs~Y~~l~~mv~~~GLK 162 (551)
|.+.|.+.|..||++||++|-+. ++=.+.. . .+...| ....+++|++-+++.|||
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 57889999999999999999864 2211100 0 000111 345799999999999999
Q ss_pred EEEEEee
Q 047891 163 LQVVMSF 169 (551)
Q Consensus 163 vqvvmsF 169 (551)
|..=+-+
T Consensus 308 VilD~V~ 314 (683)
T PRK09505 308 ILFDVVM 314 (683)
T ss_pred EEEEECc
Confidence 9554444
No 137
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=42.14 E-value=34 Score=37.02 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe---ee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEE
Q 047891 108 KPRAMNASLMALKSAGVEGVMVD---AW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vd---VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvv 166 (551)
.+-.+...+++++++|++||++. +| |+..+.+. + .-++++-++++++||+|..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~----~-~~~~~lk~~L~~~GL~v~~v 87 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER----D-QIVRRFKKALDETGLKVPMV 87 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH----H-HHHHHHHHHHHHhCCeEEEe
Confidence 34466788999999999999864 22 43332111 1 22678899999999999443
No 138
>PRK09936 hypothetical protein; Provisional
Probab=41.94 E-value=53 Score=35.01 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeee-eeccccCCCccccch----hHHHHHHHHHHcCCeEEEEEee
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAW-WGLVEKDGPLNYNWE----GYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs----~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.+++|+.-+++++..|++-+.|-== ||.- ||. +..++++.+++.||||++=|-|
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQWt~yG~~--------~fg~~~g~La~~l~~A~~~Gl~v~vGL~~ 94 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQWTRYGDA--------DFGGQRGWLAKRLAAAQQAGLKLVVGLYA 94 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeeccCC--------CcccchHHHHHHHHHHHHcCCEEEEcccC
Confidence 3799999999999999999988521 3322 443 5678999999999999554444
No 139
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.78 E-value=3e+02 Score=27.70 Aligned_cols=64 Identities=20% Similarity=0.442 Sum_probs=42.0
Q ss_pred CcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEE
Q 047891 88 KVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVM 167 (551)
Q Consensus 88 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvm 167 (551)
.+|+.+|.=+..+ +.+ .++-++.++++|+++|.+... -+|. .....++.+.++++|++. ++
T Consensus 74 ~~Pl~lM~y~n~~-----~~~---~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~--~~ 134 (244)
T PRK13125 74 SVPIILMTYLEDY-----VDS---LDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKP--VF 134 (244)
T ss_pred CCCEEEEEecchh-----hhC---HHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCE--EE
Confidence 5687667544321 123 445578889999999999421 0121 234678999999999999 55
Q ss_pred eee
Q 047891 168 SFH 170 (551)
Q Consensus 168 sFH 170 (551)
..|
T Consensus 135 ~v~ 137 (244)
T PRK13125 135 FTS 137 (244)
T ss_pred EEC
Confidence 654
No 140
>PRK05402 glycogen branching enzyme; Provisional
Probab=41.67 E-value=70 Score=37.40 Aligned_cols=76 Identities=13% Similarity=0.253 Sum_probs=46.7
Q ss_pred cceEEEeecceec--CCCcccCHHHHHHHH-HHHHHcCcceEEEeeeeeccccCCCccccc-----------------hh
Q 047891 89 VPVFVMLPLDTLS--NSGHLNKPRAMNASL-MALKSAGVEGVMVDAWWGLVEKDGPLNYNW-----------------EG 148 (551)
Q Consensus 89 vpv~VMlPLd~V~--~~~~~~~~~~~~~~L-~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-----------------s~ 148 (551)
.-+|-|-+=+-.. ..+..-+-+.+...| ..||++||+.|.+-=- .|. |...+| ..
T Consensus 242 ~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi---~e~--~~~~~~GY~~~~y~ai~~~~Gt~~d 316 (726)
T PRK05402 242 ISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPI---AEH--PFDGSWGYQPTGYYAPTSRFGTPDD 316 (726)
T ss_pred cEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCc---ccC--CCCCCCCCCcccCCCcCcccCCHHH
Confidence 4455554443221 233444567888885 9999999999976431 221 111122 23
Q ss_pred HHHHHHHHHHcCCeEEEEEee
Q 047891 149 YAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 149 Y~~l~~mv~~~GLKvqvvmsF 169 (551)
+++|++.|++.||+|..=+-+
T Consensus 317 fk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 317 FRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHCCCEEEEEECC
Confidence 789999999999999443334
No 141
>PLN02960 alpha-amylase
Probab=41.31 E-value=86 Score=38.03 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=41.1
Q ss_pred ccCHHHHH-HHHHHHHHcCcceEEEeeeeeccccCCCccccchh-----------------HHHHHHHHHHcCCeEEEEE
Q 047891 106 LNKPRAMN-ASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEG-----------------YAELIQMVQKHGLKLQVVM 167 (551)
Q Consensus 106 ~~~~~~~~-~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mv~~~GLKvqvvm 167 (551)
+-.-+++. ..|..||++||+.|.+- .+.|- |+..+|-+ +++|++.+++.||+| ||
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~V--IL 484 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLV--FL 484 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEE--EE
Confidence 34456665 55999999999999874 24442 33444543 899999999999999 55
Q ss_pred ee
Q 047891 168 SF 169 (551)
Q Consensus 168 sF 169 (551)
-+
T Consensus 485 Dv 486 (897)
T PLN02960 485 DI 486 (897)
T ss_pred Ee
Confidence 54
No 142
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=40.80 E-value=56 Score=33.85 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccCCCcc------ccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccC
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLN------YNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIP 183 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~------YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~Ip 183 (551)
+++.+++++|..+|+.-|-+|.= .+.+.-.... .+|.-..+.++.+- .+..+ .+++|-|+||..+..
T Consensus 154 ~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~v~~H~C~~~~~~~~--- 226 (324)
T PF01717_consen 154 EAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAEALNRAV-KGEDA--TVGVHVCRGNYPSIL--- 226 (324)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHHHHHHTT-STTTS--EEEEEESSSCHCTTH---
T ss_pred HHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHHHHHhcc-CCCCC--EEEEEecCccchhhH---
Confidence 57788899999999999999976 2222211111 13332222222221 14444 569999999853211
Q ss_pred CChhhHHhhhcCCCeEEeCCCCCc
Q 047891 184 LPPWVLEEISKNPDLVYTDKSGRR 207 (551)
Q Consensus 184 LP~WV~~~~~~~PDi~ytD~~G~r 207 (551)
....+.+-|.++-+-+..+
T Consensus 227 -----~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 -----PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp -----HHHHCSS-SEEEEEETSST
T ss_pred -----HHHhhcccceEEeecccCC
Confidence 2345667787776666655
No 143
>PRK07094 biotin synthase; Provisional
Probab=40.75 E-value=47 Score=34.18 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcceEEEeee---eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 113 NASLMALKSAGVEGVMVDAW---WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVW---WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
+..|+.||++|++.|.+.+= -.+.+.-.+ ...++.+.+.++.++++|+++..-+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~ii 187 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMV 187 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEE
Confidence 46788999999999987541 122222223 578999999999999999987443333
No 144
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=40.51 E-value=66 Score=32.70 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=34.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.+.++++++|+.||++|++.|++- ...+ -.++.++|-+.||-|..=+..
T Consensus 33 ~~~~~~~~d~~l~k~~G~N~iR~~---h~p~-----------~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 33 MPDEAMERDLELMKEMGFNAIRTH---HYPP-----------SPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEET---TS-------------SHHHHHHHHHHT-EEEEE-S-
T ss_pred CCHHHHHHHHHHHHhcCcceEEcc---cccC-----------cHHHHHHHhhcCCEEEEeccc
Confidence 457999999999999999999982 1122 156788999999999665555
No 145
>PRK08508 biotin synthase; Provisional
Probab=40.35 E-value=37 Score=34.78 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCc-------cccchhHHHHHHHHHHcCCeEEE
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPL-------NYNWEGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-------~YdWs~Y~~l~~mv~~~GLKvqv 165 (551)
+..|++||++|++.+.++ +|. ++. --+|.-..+.++.++++|+++-.
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~s 155 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLCS 155 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 678999999999999985 454 221 24677788888899999998843
No 146
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.24 E-value=3.1e+02 Score=28.71 Aligned_cols=132 Identities=12% Similarity=0.153 Sum_probs=82.1
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEE---eeeeecc-c-------------------------cCCCccccchhHHHHHHH
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMV---DAWWGLV-E-------------------------KDGPLNYNWEGYAELIQM 155 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~v---dVWWGiV-E-------------------------~~~p~~YdWs~Y~~l~~m 155 (551)
..-..+.|++.|..|...+.+.+++ |= |.+- + ....+.|.=+-++++++.
T Consensus 12 ~~~~~~~ik~~id~ma~~K~N~lhlHltD~-~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 90 (326)
T cd06564 12 KYYSMDFLKDIIKTMSWYKMNDLQLHLNDN-LIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAY 90 (326)
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEEeecCC-cccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHH
Confidence 3456789999999999999999885 42 3321 1 113567888899999999
Q ss_pred HHHcCCeEEEEEee-------------eccCCC----CCCCCccCCCh---hhHHhhhcCCCeEEeCCCCCcCccccccc
Q 047891 156 VQKHGLKLQVVMSF-------------HQCGGN----VGDSCTIPLPP---WVLEEISKNPDLVYTDKSGRRNPEYISLG 215 (551)
Q Consensus 156 v~~~GLKvqvvmsF-------------HqCGGN----VGD~~~IpLP~---WV~~~~~~~PDi~ytD~~G~rn~E~lSlg 215 (551)
|++.|+.|+|-+-+ ..|.+. .-+.-++.-|. .|.+..+.-=++| .+ -..|+-+|
T Consensus 91 A~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f-~~-----~~~~~HiG 164 (326)
T cd06564 91 AKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGF-NP-----KSDTVHIG 164 (326)
T ss_pred HHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhc-CC-----CCCEEEec
Confidence 99999999665432 122210 01112222221 1111111111111 11 24899999
Q ss_pred cCcccccCCCChhHHHHHHHHHHHHHHhhh
Q 047891 216 CDTIPLLRGRTPIQVYSDYMRSFRERFRDY 245 (551)
Q Consensus 216 ~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~ 245 (551)
.||.+-. .+..+.|.+|++...+.+.+.
T Consensus 165 gDE~~~~--~~~~~~~~~f~~~~~~~v~~~ 192 (326)
T cd06564 165 ADEYAGD--AGYAEAFRAYVNDLAKYVKDK 192 (326)
T ss_pred ccccccc--CccHHHHHHHHHHHHHHHHHc
Confidence 9999865 566788888888888887774
No 147
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=39.51 E-value=53 Score=38.93 Aligned_cols=84 Identities=19% Similarity=0.267 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeccccCCCccccchhHHHHH----HHHHHcCCeEEEEEeeeccCCCCCCCCccCC
Q 047891 110 RAMNASLMALKSAGVEGVMVDAW-WGLVEKDGPLNYNWEGYAELI----QMVQKHGLKLQVVMSFHQCGGNVGDSCTIPL 184 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~----~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpL 184 (551)
.+++..++.|.++|+..|-+|.= |. |...-..-+|..|.+.+ +++. .|++-..-+++|-|-||..+ | +
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal~--e~~~~~~~~~~~~l~~av~af~~~~-~~v~~~~~I~~H~C~gnf~~---I-~ 658 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAALR--EGLPLRKSEHAFYLDWAVHSFRITN-CGVQDTTQIHTHMCYSNFND---I-I 658 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcchh--hcCCcCccCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEEecCCcHH---H-H
Confidence 56778889999999999999986 63 33222346777666554 4333 35533334778999998654 1 1
Q ss_pred ChhhHHhhhcCCCeEEeCCC
Q 047891 185 PPWVLEEISKNPDLVYTDKS 204 (551)
Q Consensus 185 P~WV~~~~~~~PDi~ytD~~ 204 (551)
| .+.+.+-|.++.|-+
T Consensus 659 ~----~i~~l~~D~~~~E~~ 674 (766)
T PLN02475 659 H----SIIDMDADVITIENS 674 (766)
T ss_pred H----HHHhCCCCEEEEEcC
Confidence 1 234567787776633
No 148
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=38.91 E-value=1.9e+02 Score=29.00 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=67.7
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc--cchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCC
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY--NWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPL 184 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpL 184 (551)
-|...++++|++|+++|++-+.+|| -+|+| |.+.=-+.++.+|+..-++ .+..|-- +.=
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~Dv--------mDG~Fvpn~tfg~~~i~~i~~~~~~~--~~dvHLM---------v~~ 69 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDV--------MDNHYVPNLTFGAPICKALRDYGITA--PIDVHLM---------VKP 69 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEec--------ccCcccCccccCHHHHHHHHHhCCCC--CEEEEec---------cCC
Confidence 3578899999999999999999998 36666 5555556667777653122 2444522 222
Q ss_pred Ch-hhHHhhhcCCCeEEeCCCCCcC-cccc----ccccCcccccCCCChhHHHHHHHH
Q 047891 185 PP-WVLEEISKNPDLVYTDKSGRRN-PEYI----SLGCDTIPLLRGRTPIQVYSDYMR 236 (551)
Q Consensus 185 P~-WV~~~~~~~PDi~ytD~~G~rn-~E~l----Slg~D~~pvl~GRTpiq~Y~dfm~ 236 (551)
|. |+..-.+..+|++..--+=..+ .+.| ..|+----.+.--||++.+..+..
T Consensus 70 p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 70 VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Confidence 33 6655556666765554442222 1222 344443345677899998876654
No 149
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=38.57 E-value=7.8 Score=40.54 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=26.6
Q ss_pred cceEEeccCcccCCc-cChHHHHHHHHHhcC
Q 047891 486 SAFTYLRMNKKLFMS-DNWRNLVEFVQRMSS 515 (551)
Q Consensus 486 ~~FTylRm~~~lf~~-~n~~~F~~FVr~m~~ 515 (551)
-=||++|||..++.| .++..+..|+|.|..
T Consensus 96 ~PfTiqRlcEl~~~P~~~y~~~~k~~~alek 126 (288)
T PF09184_consen 96 PPFTIQRLCELLLDPRKHYKTLDKFLRALEK 126 (288)
T ss_pred CChhHHHHHHHHhChhhccccHHHHHHHHhe
Confidence 459999999999998 479999999999865
No 150
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=38.06 E-value=38 Score=34.97 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCcceEE-Ee--ee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEEE
Q 047891 112 MNASLMALKSAGVEGVM-VD--AW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVM 167 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~-vd--VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvm 167 (551)
.+..|++||++|++.+. +. .. -.+...-.|++..|..+.+.++.+++.|+++-.-|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeE
Confidence 36889999999998773 11 11 11112223778899999999999999999984333
No 151
>PRK00957 methionine synthase; Provisional
Probab=37.97 E-value=1.3e+02 Score=31.06 Aligned_cols=80 Identities=25% Similarity=0.354 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhh
Q 047891 110 RAMNASLMALKSAGVEGVMVDAW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWV 188 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV 188 (551)
+++...+++|.++|++.|.+|.= |.. +-.+++...+.++.+.+ ++++ ....|-||+ . -|.|
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~--~v~lH~CG~-~-------~~i~- 205 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNV--PVAMHVCGD-V-------SNII- 205 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCC--ceEEEECCC-c-------HHHH-
Confidence 45677888899999999999863 553 11234444444444443 3344 346799953 2 1212
Q ss_pred HHhhhcCCCeEEeCCCCCc
Q 047891 189 LEEISKNPDLVYTDKSGRR 207 (551)
Q Consensus 189 ~~~~~~~PDi~ytD~~G~r 207 (551)
-...+.+-|.++.|-.|.+
T Consensus 206 ~~l~~~~vd~i~ld~~~~~ 224 (305)
T PRK00957 206 DDLLKFNVDILDHEFASNK 224 (305)
T ss_pred HHHHhCCCCEEEEeecCCC
Confidence 2234667788888876653
No 152
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=37.47 E-value=1.7e+02 Score=30.85 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=63.3
Q ss_pred CCCCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEE
Q 047891 85 HRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 85 ~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvq 164 (551)
.+..+|+-+|.=...|- ...+++=++.+|++|||||.|.- =| + ..=+++.+.++++||+..
T Consensus 91 ~~~~~Pivlm~Y~Npi~-------~~Gie~F~~~~~~~GvdGlivpD--------LP--~--ee~~~~~~~~~~~gi~~I 151 (265)
T COG0159 91 KGVKVPIVLMTYYNPIF-------NYGIEKFLRRAKEAGVDGLLVPD--------LP--P--EESDELLKAAEKHGIDPI 151 (265)
T ss_pred cCCCCCEEEEEeccHHH-------HhhHHHHHHHHHHcCCCEEEeCC--------CC--h--HHHHHHHHHHHHcCCcEE
Confidence 34678998888776542 47788889999999999998852 12 1 222467888899999996
Q ss_pred EEEeeeccCCCCCCCCccCCC-hhhHHhhhcC-CCeEEeCCCCCcC
Q 047891 165 VVMSFHQCGGNVGDSCTIPLP-PWVLEEISKN-PDLVYTDKSGRRN 208 (551)
Q Consensus 165 vvmsFHqCGGNVGD~~~IpLP-~WV~~~~~~~-PDi~ytD~~G~rn 208 (551)
.+-+= .-| .++..+.+.- .-|+|..+.|..-
T Consensus 152 ~lvaP-------------tt~~~rl~~i~~~a~GFiY~vs~~GvTG 184 (265)
T COG0159 152 FLVAP-------------TTPDERLKKIAEAASGFIYYVSRMGVTG 184 (265)
T ss_pred EEeCC-------------CCCHHHHHHHHHhCCCcEEEEecccccC
Confidence 55443 234 4555544433 4599999987654
No 153
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=37.14 E-value=43 Score=34.56 Aligned_cols=44 Identities=34% Similarity=0.471 Sum_probs=34.6
Q ss_pred HHHHHHcCcceEEEeeeeeccccCCCc---cccchhHHHHHHHHHHcCCeE
Q 047891 116 LMALKSAGVEGVMVDAWWGLVEKDGPL---NYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 116 L~~LK~~GVdGV~vdVWWGiVE~~~p~---~YdWs~Y~~l~~mv~~~GLKv 163 (551)
+..++++|++|||+|-+ .+.+.. .+++....+.++.+|++||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 56778999999999976 444433 456677788899999999987
No 154
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=36.95 E-value=2.9e+02 Score=28.08 Aligned_cols=96 Identities=20% Similarity=0.124 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCC---
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPL--- 184 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpL--- 184 (551)
+++.+.+-|++|.++|...|-+|+-- .|+ +.++=.+.+.+++.++++|=++ +++.+.-...-+.....++
T Consensus 62 ~R~~~A~ll~~L~~~ga~~I~~Di~f--~~~---~~~~~~~D~~la~al~~~~~~v--vl~~~~~~~~~~~~~~~~~~~~ 134 (310)
T PF05226_consen 62 PRSVYARLLDRLAAAGAKAIGFDILF--DEP---DPSNPEGDQALAEALRRAGNRV--VLASVFSPEEDGARPEEPPLPL 134 (310)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeee--cCC---CCCCchHHHHHHHHHHhCCCeE--EEEEecccccccccccCccccc
Confidence 67889999999999999999999964 343 1111127888999999998777 5665432222222222222
Q ss_pred ChhhH---HhhhcCCCeEEeCCCCCcCccccc
Q 047891 185 PPWVL---EEISKNPDLVYTDKSGRRNPEYIS 213 (551)
Q Consensus 185 P~WV~---~~~~~~PDi~ytD~~G~rn~E~lS 213 (551)
|.=.. ..|-. -+..|.+|....-.+-
T Consensus 135 p~l~~~~~~~G~v---n~~~D~DG~vRr~~l~ 163 (310)
T PF05226_consen 135 PPLASAAAGLGFV---NVSPDSDGVVRRFPLL 163 (310)
T ss_pred hhhhhcccceeeE---EeeECCCCcEeeeecc
Confidence 22111 11112 2566888887766553
No 155
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=36.29 E-value=1.8e+02 Score=29.86 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEE
Q 047891 86 RNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 86 ~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqv 165 (551)
...+||.|....++ +..-+..+..+++|+|+|++ +=| --...+-.+..+.++-+.++ .++ |
T Consensus 67 ~~~~pvi~gv~~~t----------~~~i~~a~~a~~~Gad~v~~------~pP-~y~~~~~~~i~~~f~~v~~~-~~~-p 127 (289)
T cd00951 67 AGRVPVLAGAGYGT----------ATAIAYAQAAEKAGADGILL------LPP-YLTEAPQEGLYAHVEAVCKS-TDL-G 127 (289)
T ss_pred CCCCCEEEecCCCH----------HHHHHHHHHHHHhCCCEEEE------CCC-CCCCCCHHHHHHHHHHHHhc-CCC-C
Q ss_pred EEeeeccCCCCCCCCccCCChhhHHhhhcCCC-eEEeCCCCCcC--ccccccccCcccccCC
Q 047891 166 VMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD-LVYTDKSGRRN--PEYISLGCDTIPLLRG 224 (551)
Q Consensus 166 vmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PD-i~ytD~~G~rn--~E~lSlg~D~~pvl~G 224 (551)
||-++ +-| .+++ |.=+.+..+.+|. +-++|.+|... .+++...-|++.|+.|
T Consensus 128 i~lYn-~~g-----~~l~-~~~l~~L~~~~pnivgiKds~~d~~~~~~~~~~~~~~~~v~~G 182 (289)
T cd00951 128 VIVYN-RAN-----AVLT-ADSLARLAERCPNLVGFKDGVGDIELMRRIVAKLGDRLLYLGG 182 (289)
T ss_pred EEEEe-CCC-----CCCC-HHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEeC
No 156
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=35.64 E-value=2.3e+02 Score=28.68 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=66.8
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc--cchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCC
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY--NWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPL 184 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpL 184 (551)
-|...++.+|++|+++|++-+.+|| -+|+| |.+-=-++++.+|+...++ .+..|---- .+
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDi--------mDG~FVPN~tfg~~~i~~lr~~~~~~--~~dvHLMv~--------~P 74 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDV--------MDNHYVPNLTIGPMVCQALRKHGITA--PIDVHLMVE--------PV 74 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEec--------ccCccCCCcccCHHHHHHHHhhCCCC--CEEEEeccC--------CH
Confidence 4678899999999999999999998 46666 4555455677777653222 234442211 13
Q ss_pred ChhhHHhhhcCCCeEEeCCCCCcC-cccc----ccccCcccccCCCChhHHHHHHHH
Q 047891 185 PPWVLEEISKNPDLVYTDKSGRRN-PEYI----SLGCDTIPLLRGRTPIQVYSDYMR 236 (551)
Q Consensus 185 P~WV~~~~~~~PDi~ytD~~G~rn-~E~l----Slg~D~~pvl~GRTpiq~Y~dfm~ 236 (551)
-.|+..-.+..+|++..--.-..+ .+.| +.|+--=-+|.--||++.+..+..
T Consensus 75 ~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~ 131 (223)
T PRK08745 75 DRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLP 131 (223)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHh
Confidence 337666556667766555443322 1111 233322224566799998877643
No 157
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=35.58 E-value=1.5e+02 Score=35.87 Aligned_cols=65 Identities=25% Similarity=0.219 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc-------------cchhHHHHHHHHHHcCCeEEEEEeeeccC
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY-------------NWEGYAELIQMVQKHGLKLQVVMSFHQCG 173 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKvqvvmsFHqCG 173 (551)
+.+.+.+.|..|+.+||+.|.+.--+-.... +..-| ....+++|++.++++||+|.+=+-+--++
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~g-s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPG-STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCC-CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 3578999999999999999977654432211 22233 37789999999999999996555554343
No 158
>PRK08445 hypothetical protein; Provisional
Probab=35.51 E-value=51 Score=35.11 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCcceEE---Eeee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 113 NASLMALKSAGVEGVM---VDAW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~---vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
+..|++||++|++-+. +... -.+-+.-.|+.-.-..|.+..+.++++||++-.-|=|
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~ 204 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMF 204 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEe
Confidence 6799999999999543 3322 2222333366777777899999999999999655555
No 159
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=35.28 E-value=2.2e+02 Score=29.62 Aligned_cols=86 Identities=17% Similarity=0.233 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCccc------cchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCC-
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPLNY------NWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLP- 185 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y------dWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP- 185 (551)
.+++++..++|++.|.+-+ ..-|...-.++ -+.-+.+++++++++||++++.+ .|....++.
T Consensus 77 ~~die~A~~~g~~~v~i~~--s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~---------ed~~r~d~~~ 145 (279)
T cd07947 77 KEDLKLVKEMGLKETGILM--SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL---------EDITRADIYG 145 (279)
T ss_pred HHHHHHHHHcCcCEEEEEE--cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE---------EcccCCCccc
Confidence 3556666678999988754 44343222333 34558888999999999987666 232333333
Q ss_pred ---hhhHHhhh----cCCC--eEEeCCCCCcCc
Q 047891 186 ---PWVLEEIS----KNPD--LVYTDKSGRRNP 209 (551)
Q Consensus 186 ---~WV~~~~~----~~PD--i~ytD~~G~rn~ 209 (551)
.|+.+..+ .-.| |-+.|--|.-++
T Consensus 146 ~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P 178 (279)
T cd07947 146 FVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVP 178 (279)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc
Confidence 58877655 3445 447777776443
No 160
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=34.97 E-value=44 Score=35.32 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCcceEE---Eeee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 112 MNASLMALKSAGVEGVM---VDAW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~---vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.+..|++||++|++.+- +... --+...-.|++..|.-+.+.++.++++|+++-.-|=+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 45679999999998765 1111 1122223367778899999999999999999544444
No 161
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=34.89 E-value=73 Score=31.12 Aligned_cols=49 Identities=20% Similarity=0.353 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEE
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvq 164 (551)
...++.-|+.++++|.+||++.. +..... +.+...++-+.++++||++-
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~~------~~~~~~~l~~~l~~~gl~i~ 62 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFPA------DYKELAELKELLADYGLEIT 62 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCCc------hhhhHHHHHHHHHHcCcEEE
Confidence 46688899999999999999987 222222 22238999999999999983
No 162
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=34.55 E-value=66 Score=35.08 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=37.5
Q ss_pred HHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 115 SLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 115 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.|..++++||+||.... -.-.....+.-+--.++=++|+++||.+-||=|-
T Consensus 15 ~l~~irQ~Gv~gIV~aL----h~iP~g~~W~~~~I~~~k~~ie~~Gl~~~vvESv 65 (362)
T COG1312 15 TLEDIRQAGVKGVVTAL----HHIPAGEVWPVEEILKRKEEIESAGLTWSVVESV 65 (362)
T ss_pred cHHHHHHhCccceeccC----CCCCCCCcCcHHHHHHHHHHHHHcCceEEeecCC
Confidence 47788888999997543 2322233555566778889999999999988776
No 163
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=34.49 E-value=1.1e+02 Score=36.55 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=48.3
Q ss_pred CcceEEEeecceecCCCcccCHHHH-HHHHHHHHHcCcceEEEeeeeeccccCCCccccc-----------------hhH
Q 047891 88 KVPVFVMLPLDTLSNSGHLNKPRAM-NASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW-----------------EGY 149 (551)
Q Consensus 88 ~vpv~VMlPLd~V~~~~~~~~~~~~-~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-----------------s~Y 149 (551)
..-+|-+=.-. .+..+.+..-+++ +..|..||++||+.|.+-- +.|. +....| ..+
T Consensus 229 ~~~IYE~Hvg~-~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dl 302 (758)
T PLN02447 229 ALRIYEAHVGM-SSEEPKVNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDL 302 (758)
T ss_pred CCEEEEEeCCc-ccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHH
Confidence 34455544432 2334445555665 5669999999999998742 2222 111122 448
Q ss_pred HHHHHHHHHcCCeEEEEEee-ecc
Q 047891 150 AELIQMVQKHGLKLQVVMSF-HQC 172 (551)
Q Consensus 150 ~~l~~mv~~~GLKvqvvmsF-HqC 172 (551)
++|++.++++||+|..=+-+ |.|
T Consensus 303 k~LVd~aH~~GI~VilDvV~nH~~ 326 (758)
T PLN02447 303 KYLIDKAHSLGLRVLMDVVHSHAS 326 (758)
T ss_pred HHHHHHHHHCCCEEEEEecccccc
Confidence 99999999999999443333 443
No 164
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=34.45 E-value=91 Score=30.86 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
+.+++.+.+++||+ ++|.|-+-.=||.-....| ...-+++++-+-+.|..+ |++-|.
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G~Dv--IiG~H~ 214 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAGADV--VIGHHP 214 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcCCCE--EEcCCC
Confidence 46889999999998 7999999999997332223 222356666666789887 888883
No 165
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=34.23 E-value=4.8e+02 Score=27.35 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=54.9
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeccccCCCccccch-----hHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 047891 106 LNKPRAMNASLMALKSAG--VEGVMVDAWWGLVEKDGPLNYNWE-----GYAELIQMVQKHGLKLQVVMSFHQCGGNVGD 178 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD 178 (551)
..+.+.+..-++.+++.+ +|.|.+|+=|. . +-+.|+|. --+++++-+++.|+|+.+++ |
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~--~-------- 85 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIV--D-------- 85 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh--C--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEe--e--------
Confidence 356788888889998866 58899996553 1 23455554 47789999999999985544 3
Q ss_pred CCccCC----ChhhHHhhhcCCCeEEeCCCCC
Q 047891 179 SCTIPL----PPWVLEEISKNPDLVYTDKSGR 206 (551)
Q Consensus 179 ~~~IpL----P~WV~~~~~~~PDi~ytD~~G~ 206 (551)
+.|.. |.+ +++.+. +.|.++.+|.
T Consensus 86 -P~i~~~~~~~~~--~~~~~~-~~~v~~~~g~ 113 (317)
T cd06600 86 -PGIRVDQNYSPF--LSGMDK-GKFCEIESGE 113 (317)
T ss_pred -ccccCCCCChHH--HHHHHC-CEEEECCCCC
Confidence 22322 333 333333 7888888875
No 166
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=33.94 E-value=63 Score=32.59 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=41.0
Q ss_pred hHHHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCceeeccccc---ccChhHHH
Q 047891 404 YIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVELAGENALE---RYDADAYA 471 (551)
Q Consensus 404 Y~~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~---~~d~~a~~ 471 (551)
...+++.|-..|+...++|+.-.--...---..--++++..+...+++.||..+|||.-- .+|.--|.
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GEfhT~V~dgPlF~ 193 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDESFLGRELDRELIEELPELNKKYGVDPCGEGGEFHTFVVDGPLFK 193 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GGGTT-B--HHHHHHHHHHHHHH---TT-TTTTEEEEEEE-TT-S
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChHHCCCCccHHHHHHHHHHHhhcCccccCCCeeEEEEEEEccccc
Confidence 667888888889999999987543221111123346899999999999999999999865 45544443
No 167
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=33.81 E-value=1.2e+02 Score=32.47 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCcceEEEe--eeeecccc--CCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhh
Q 047891 113 NASLMALKSAGVEGVMVD--AWWGLVEK--DGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWV 188 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vd--VWWGiVE~--~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV 188 (551)
..++++++++|++.|.+- ++-.-++. ....+..+....+.++.+++.|+++++.+. |.. -.-|..+
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e---------da~-r~~~~~l 143 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE---------DAT-RTDIDFL 143 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe---------ecC-CCCHHHH
Confidence 567888999999998884 33333331 123344677888999999999999865442 222 2347777
Q ss_pred HHhh----hcCCC-eEEeCCCCCc
Q 047891 189 LEEI----SKNPD-LVYTDKSGRR 207 (551)
Q Consensus 189 ~~~~----~~~PD-i~ytD~~G~r 207 (551)
.+.. +..+| |.+.|-.|.-
T Consensus 144 ~~~~~~~~~~g~~~i~l~DT~G~~ 167 (363)
T TIGR02090 144 IKVFKRAEEAGADRINIADTVGVL 167 (363)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcc
Confidence 6632 22334 6777777753
No 168
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=33.79 E-value=60 Score=39.29 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCcceEEE-eee-eecc
Q 047891 112 MNASLMALKSAGVEGVMV-DAW-WGLV 136 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~v-dVW-WGiV 136 (551)
.-.-|+.||++||..|++ +|+ ++-|
T Consensus 288 gi~hLk~L~eLGVThVeLLPv~df~tv 314 (898)
T TIGR02103 288 GVQHLKKLADAGVTHLHLLPTFDIATV 314 (898)
T ss_pred hhHHHHHHHhCCCcEEEEcChhhcCcc
Confidence 345789999999999985 666 6654
No 169
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=33.51 E-value=59 Score=33.66 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=52.6
Q ss_pred CcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEE
Q 047891 88 KVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVM 167 (551)
Q Consensus 88 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvm 167 (551)
+|+||-+-.|--+-- . ...++.-|+.+|++|++.|+|.. +--...=.-..++++++++.|||+.+=.
T Consensus 67 gV~v~~GGtl~E~a~----~-q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 67 GVYVYPGGTLFEVAY----Q-QGKFDEYLEECKELGFDAIEISD--------GTIDLPEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp T-EEEE-HHHHHHHH----H-TT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEEEE
T ss_pred CCeEeCCcHHHHHHH----h-cChHHHHHHHHHHcCCCEEEecC--------CceeCCHHHHHHHHHHHHHCCCEEeecc
Confidence 888888877765421 2 67899999999999999999853 3333344567789999999999995544
Q ss_pred eeeccCCCCCCCCccCCChhhHH
Q 047891 168 SFHQCGGNVGDSCTIPLPPWVLE 190 (551)
Q Consensus 168 sFHqCGGNVGD~~~IpLP~WV~~ 190 (551)
.-. +.+.+...++..|+..
T Consensus 134 G~K----~~~~~~~~~~~~~i~~ 152 (244)
T PF02679_consen 134 GKK----DPESDFSLDPEELIEQ 152 (244)
T ss_dssp S-S----SHHHHTT--CCHHHHH
T ss_pred cCC----CchhcccCCHHHHHHH
Confidence 321 1222233346677765
No 170
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=32.94 E-value=2.6e+02 Score=28.22 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCcc------ccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCCh
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPLN------YNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPP 186 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~------YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~ 186 (551)
..+++..+..|++.|.+-+-.. |.....+ .-+....++++.+++.|++++ +++ -|.... -|.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~-------~~~~~~-~~~ 139 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVS--DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGA-------EDASRA-DPD 139 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--Eee-------ccCCCC-CHH
Confidence 3456778889999988877332 2111112 235778899999999999774 333 233333 366
Q ss_pred hhHHhhh----cCCC-eEEeCCCCC
Q 047891 187 WVLEEIS----KNPD-LVYTDKSGR 206 (551)
Q Consensus 187 WV~~~~~----~~PD-i~ytD~~G~ 206 (551)
.+.+..+ ..+| |.+.|-.|.
T Consensus 140 ~~~~~~~~~~~~G~~~i~l~DT~G~ 164 (259)
T cd07939 140 FLIEFAEVAQEAGADRLRFADTVGI 164 (259)
T ss_pred HHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 6665322 2344 667777775
No 171
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=32.74 E-value=1.4e+02 Score=32.00 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=65.6
Q ss_pred ceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 90 PVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 90 pv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.+-|-.|-..+ ...+++++.++.|+..|.+.|--..=|...+.-+.- +=+--.+|-++..+-..|+ |||.
T Consensus 12 ~I~iIaPSs~~------~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s--~~~R~~dL~~af~d~~vk~--Il~~ 81 (313)
T COG1619 12 EIGIIAPSSGA------TATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGS--DEERAEDLMSAFSDPDVKA--ILCV 81 (313)
T ss_pred EEEEEecCccc------chHHHHHHHHHHHHHcCCEEEechhhhhccccccCC--HHHHHHHHHHHhcCCCCeE--EEEc
Confidence 34444454443 468999999999999998888776655444321111 1223456677777777777 9998
Q ss_pred eccCCCCCCCCccCCChhhHHhhhcCCCeEE
Q 047891 170 HQCGGNVGDSCTIPLPPWVLEEISKNPDLVY 200 (551)
Q Consensus 170 HqCGGNVGD~~~IpLP~WV~~~~~~~PDi~y 200 (551)
= | |..++==||.|-.+..+++|-||+
T Consensus 82 r--G---Gygs~rlLp~ld~~~i~~~pKifi 107 (313)
T COG1619 82 R--G---GYGSNRLLPYLDYDLIRNHPKIFI 107 (313)
T ss_pred c--c---CCChhhhhhhcchHHHhcCCceEE
Confidence 3 3 445666699999999999998775
No 172
>PRK15108 biotin synthase; Provisional
Probab=32.48 E-value=75 Score=33.78 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCccc-------cchhHHHHHHHHHHcCCeE
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPLNY-------NWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------dWs~Y~~l~~mv~~~GLKv 163 (551)
+..|++||++|||.|.++. |. .|+.| +|....+..+.++++|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~l-----eT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNL-----DT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeecc-----cc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 6789999999999988754 22 22222 5666777777888889876
No 173
>PLN02540 methylenetetrahydrofolate reductase
Probab=32.37 E-value=1e+02 Score=35.58 Aligned_cols=74 Identities=16% Similarity=0.322 Sum_probs=49.9
Q ss_pred HHHHHHHHHHH---HcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCC--C---CCCCCc
Q 047891 110 RAMNASLMALK---SAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGG--N---VGDSCT 181 (551)
Q Consensus 110 ~~~~~~L~~LK---~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGG--N---VGD~~~ 181 (551)
..++.+|..|| ++|++.+..- --||-..|.+.++.||+.|+++-++...--+.. + .-.-|.
T Consensus 153 ~~~~~dl~~Lk~KvdAGAdFiITQ-----------lfFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~G 221 (565)
T PLN02540 153 EAYQKDLAYLKEKVDAGADLIITQ-----------LFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCK 221 (565)
T ss_pred CChHHHHHHHHHHHHcCCCEEeec-----------cccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccC
Confidence 34556777776 4999998753 358999999999999999966644433221111 0 001266
Q ss_pred cCCChhhHHhhhc
Q 047891 182 IPLPPWVLEEISK 194 (551)
Q Consensus 182 IpLP~WV~~~~~~ 194 (551)
|.+|.|+.+..+.
T Consensus 222 i~IP~~i~~rLe~ 234 (565)
T PLN02540 222 TKIPAEITAALEP 234 (565)
T ss_pred CcCCHHHHHHHHh
Confidence 8999999987653
No 174
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=32.23 E-value=40 Score=34.62 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=34.1
Q ss_pred hhhhccCCCCCCCCCCCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeee
Q 047891 72 EMVHELASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWG 134 (551)
Q Consensus 72 ~~~~~~~~~~~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWG 134 (551)
-+.|.+...+|+. | -.++++..+..+++-.++|+ .|+..|++|||=|
T Consensus 7 PLs~YfI~SSHNT---Y------------L~g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg 53 (229)
T cd08627 7 PLSHYWISSSHNT---Y------------LTGDQFSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred hhhhheeecCcCc---c------------ccCCccCCcccHHHHHHHHH-hCCCEEEEEeecC
Confidence 3667777665554 1 12467777778887777877 9999999999965
No 175
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=32.18 E-value=85 Score=33.75 Aligned_cols=67 Identities=19% Similarity=0.362 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eec-cccC-----CCcccc----chhHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 047891 110 RAMNASLMALKSAGVEGVMVDAW-WGL-VEKD-----GPLNYN----WEGYAELIQMVQKHGLKLQVVMSFHQCGGNVG 177 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVW-WGi-VE~~-----~p~~Yd----Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVG 177 (551)
+++++.+++|.++|+..|-+|.= |+. +... +....+ =..|.+++..+-+ |+.--..+++|-|-||..
T Consensus 170 ~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~-~~p~d~~v~~HiC~Gn~~ 247 (368)
T PRK06520 170 KTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALA-GKPADLTIGLHVCRGNFR 247 (368)
T ss_pred HHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEeecCCCC
Confidence 57778889999999999999976 764 1110 001111 1223344444433 664444789999998863
No 176
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=31.62 E-value=94 Score=30.91 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=47.1
Q ss_pred hHHHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCceeeccccc---ccChhHHH
Q 047891 404 YIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVELAGENALE---RYDADAYA 471 (551)
Q Consensus 404 Y~~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~---~~d~~a~~ 471 (551)
-..|++.+.+.|.....+|+.-.--....--..--+.++..+....++.|+.++|||.-- .+|.--|.
T Consensus 124 ~~el~~~~~~~G~~~~i~~v~~~~l~~~~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE~hT~V~d~P~F~ 194 (218)
T TIGR03679 124 QEEYLRELVERGFRFIIVSVSAYGLDESWLGREIDEKYIEKLKALNKRYGINPAGEGGEYETLVLDAPLFK 194 (218)
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHHCCCccCHHHHHHHHHHHhhcCccccCCCceeeEEEEeccCCC
Confidence 467999999999999999986432111001122335788888999999999999999864 34544443
No 177
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=31.19 E-value=2e+02 Score=33.26 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=56.2
Q ss_pred cchhhhhhccCCCCCCCCCCCcceEEEeec-ceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccc
Q 047891 68 SEKREMVHELASPPHNHHRNKVPVFVMLPL-DTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW 146 (551)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~vpv~VMlPL-d~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW 146 (551)
...+|.+..+... -..+|+-.+++= ..|.-. --..+.++..++..+..||+.|.+-.-...+
T Consensus 61 e~p~e~lr~l~~~-----~~~~~lqml~Rg~n~vg~~--~ypddvv~~~v~~a~~~Gid~~rifd~lnd~---------- 123 (593)
T PRK14040 61 EDPWERLRELKKA-----MPNTPQQMLLRGQNLLGYR--HYADDVVERFVERAVKNGMDVFRVFDAMNDP---------- 123 (593)
T ss_pred CCHHHHHHHHHHh-----CCCCeEEEEecCcceeccc--cCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH----------
Confidence 4556666655432 124666666541 112110 0134578899999999999999887533333
Q ss_pred hhHHHHHHHHHHcCCeEEEEEee
Q 047891 147 EGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 147 s~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
..-...+++|+++|+++++.+||
T Consensus 124 ~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 124 RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEE
Confidence 35778899999999999998887
No 178
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=31.10 E-value=1.3e+02 Score=29.70 Aligned_cols=52 Identities=6% Similarity=0.136 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeE
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
..++..|..+.++|+++|.+ |.+-.....+..++=...+++-++++++||++
T Consensus 10 ~~~~~~~~~~~~~G~~~vel--~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQL--FLGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 34778999999999999998 33222221122333345888999999999985
No 179
>PRK06256 biotin synthase; Validated
Probab=31.04 E-value=74 Score=33.01 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCc-------cccchhHHHHHHHHHHcCCeEE
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPL-------NYNWEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-------~YdWs~Y~~l~~mv~~~GLKvq 164 (551)
+..++.||++|++.|.+. +|. .+. ..+|..+.+.++.++++|+++.
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~ 204 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPC 204 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeec
Confidence 356788999999999774 343 221 2478888899999999999873
No 180
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=30.87 E-value=36 Score=33.81 Aligned_cols=73 Identities=14% Similarity=0.380 Sum_probs=35.1
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccccCcccccC
Q 047891 144 YNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLR 223 (551)
Q Consensus 144 YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~ 223 (551)
|+|+.|+.+++.++++||+|.+ +-+|.-+.....+. .+---++.. ...|- .+.+
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipviA----------------~N~pr~~~~~V~~~-G~~~L~~~~---r~~l~---~~~~--- 139 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVIA----------------LNVPRELVRKVARE-GLDSLSEEE---RAWLP---PDIP--- 139 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EEE----------------EE--HHHHHHHHT----------T------------SSS---
T ss_pred CchHHHHHHHHHHHHCCCCEEE----------------ecCCHHHHHHHHHh-cccchhhhh---HhhcC---CCCC---
Confidence 5899999999999999998832 23777666554432 110011111 11111 0011
Q ss_pred CCChhHHHHHHHHHHHHHHhh
Q 047891 224 GRTPIQVYSDYMRSFRERFRD 244 (551)
Q Consensus 224 GRTpiq~Y~dfm~SF~~~f~~ 244 (551)
+|-+.|++++.+.......
T Consensus 140 --~~~~~~~~~~~~~~~~h~~ 158 (213)
T PF04187_consen 140 --LPDPAYRARLQEIFAGHCG 158 (213)
T ss_dssp --S-HHHHHHHHHHHHHHHT-
T ss_pred --CChHHHHHHHHHHHHhccC
Confidence 3578899998777766433
No 181
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=30.57 E-value=1.4e+02 Score=28.68 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeE
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
.++.+.-.+.+++.|+.||.+..-.+-.-...+ ..++.+++.++++|+-|
T Consensus 84 ~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~pv 133 (273)
T PF04909_consen 84 EDAVEELERALQELGFRGVKLHPDLGGFDPDDP-----RLDDPIFEAAEELGLPV 133 (273)
T ss_dssp HHHHHHHHHHHHTTTESEEEEESSETTCCTTSG-----HCHHHHHHHHHHHT-EE
T ss_pred hhHHHHHHHhccccceeeeEecCCCCccccccH-----HHHHHHHHHHHhhccce
Confidence 467777777778999999998876544433222 22289999999999755
No 182
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=30.49 E-value=1.4e+02 Score=35.34 Aligned_cols=83 Identities=16% Similarity=0.310 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeccccCCCccccchhHHHH-HHHHHHc--CCeEEEEEeeeccCCCCCCCCccCCC
Q 047891 110 RAMNASLMALKSAGVEGVMVDAW-WGLVEKDGPLNYNWEGYAEL-IQMVQKH--GLKLQVVMSFHQCGGNVGDSCTIPLP 185 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l-~~mv~~~--GLKvqvvmsFHqCGGNVGD~~~IpLP 185 (551)
.+++..++.|.++|++-|-+|.= |- |.-.-.+-+|..|.+. .+..+.+ |++--.-+.+|-|-||++| +=
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL~--~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~-----i~ 647 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPALR--EGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNE-----II 647 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchhh--hcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHH-----HH
Confidence 45677889999999999999976 53 3211122355555433 3444332 5431123489999998763 11
Q ss_pred hhhHHhhhcCCCeEEeC
Q 047891 186 PWVLEEISKNPDLVYTD 202 (551)
Q Consensus 186 ~WV~~~~~~~PDi~ytD 202 (551)
.++ .+.+.|.+..|
T Consensus 648 ~~l---~~l~vD~i~lE 661 (750)
T TIGR01371 648 ESI---ADLDADVISIE 661 (750)
T ss_pred HHH---HhCCCCEEEEE
Confidence 233 35667777776
No 183
>PRK02227 hypothetical protein; Provisional
Probab=30.47 E-value=66 Score=33.28 Aligned_cols=46 Identities=30% Similarity=0.385 Sum_probs=36.5
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCC---ccccchhHHHHHHHHHHcCCeE
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGP---LNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p---~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
.-+..++++|++|+|+|-+ ++++- ..+++....+.++++|++||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4567889999999999965 44443 3467788888999999999987
No 184
>PRK15108 biotin synthase; Provisional
Probab=30.36 E-value=7e+02 Score=26.64 Aligned_cols=120 Identities=19% Similarity=0.273 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChh
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPW 187 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~W 187 (551)
+++.+.+..+.+++.|+.-|.+-.=| + .|-..++.+|.++++.+++.|+++ ++|. | .++ +..
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g---~--~p~~~~~e~i~~~i~~ik~~~i~v--~~s~---G-------~ls-~e~ 138 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAW---K--NPHERDMPYLEQMVQGVKAMGLET--CMTL---G-------TLS-ESQ 138 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecC---C--CCCcchHHHHHHHHHHHHhCCCEE--EEeC---C-------cCC-HHH
Confidence 46788888889999999998664333 1 354567899999999999998865 4443 2 122 444
Q ss_pred hHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEeccc
Q 047891 188 VLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLG 258 (551)
Q Consensus 188 V~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~VGlG 258 (551)
+.+-.+.-=|-+-.+-+.. ++. +.-.++-.-|.+.++..+...+.=+ .+-+.+-||||
T Consensus 139 l~~LkeAGld~~n~~leT~--p~~----------f~~I~~~~~~~~rl~~i~~a~~~G~-~v~sg~i~Glg 196 (345)
T PRK15108 139 AQRLANAGLDYYNHNLDTS--PEF----------YGNIITTRTYQERLDTLEKVRDAGI-KVCSGGIVGLG 196 (345)
T ss_pred HHHHHHcCCCEEeeccccC--hHh----------cCCCCCCCCHHHHHHHHHHHHHcCC-ceeeEEEEeCC
Confidence 4433233223332222221 111 1111122468888888888755411 24446666665
No 185
>PRK06233 hypothetical protein; Provisional
Probab=30.17 E-value=1.1e+02 Score=32.87 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eec-cccCCC---ccccchhHHHHHHH-------HHHcCCeEEEEEeeeccCCCCC
Q 047891 110 RAMNASLMALKSAGVEGVMVDAW-WGL-VEKDGP---LNYNWEGYAELIQM-------VQKHGLKLQVVMSFHQCGGNVG 177 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVW-WGi-VE~~~p---~~YdWs~Y~~l~~m-------v~~~GLKvqvvmsFHqCGGNVG 177 (551)
+++++.+++|.++|++.|-+|.= |+. .+.... .--.+..|.++++. +-+ |+.--..+++|-|-||..
T Consensus 171 ~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~-~~p~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 171 QAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALA-DLPEDLTVTTHICRGNFK 249 (372)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHh-CCCcCCEEEEEeeCCCCC
Confidence 56778889999999999999975 763 221011 10123334333332 222 553334679999988863
No 186
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=30.01 E-value=57 Score=29.91 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeee---ecccc-CCCccccchhHHHHHHHHHHcCCeEEEEEeee
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWW---GLVEK-DGPLNYNWEGYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWW---GiVE~-~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
.+.++..++..+.+|++.|.+...+ ..... +..-+.--..++++.+++++.|+++ ++-.|
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i--~lE~~ 133 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI--ALENH 133 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE--EEE-S
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE--EEecc
Confidence 5788899999999999999988552 11110 0112222347788999999999765 55554
No 187
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=29.85 E-value=1.2e+02 Score=32.40 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCcceEEEee-eeeccccCCCccccchhHHHHHH-H----HHHcCCeEEEEEeeeccCCCCCC
Q 047891 109 PRAMNASLMALKSAGVEGVMVDA-WWGLVEKDGPLNYNWEGYAELIQ-M----VQKHGLKLQVVMSFHQCGGNVGD 178 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdV-WWGiVE~~~p~~YdWs~Y~~l~~-m----v~~~GLKvqvvmsFHqCGGNVGD 178 (551)
..++++.++.|+.+||.-|.+|. -|+.-.+... |..|.+.+. . ++..|-++ -.++|-|.|+..+
T Consensus 157 A~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~d~--~i~~HiCy~e~~~ 226 (330)
T COG0620 157 ALALRDEVKDLEDAGIKIIQIDEPALREGLPLRR----DDDYLEWAVEAINLAAAGVGADT--QIHLHICYSEFND 226 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEeechhhhhcCCcccc----chHHHHHHHHHHHHHHhcCCCCc--EEEEEEECCcccc
Confidence 35677788999999999999999 4877655333 244444332 2 23345555 5677899997655
No 188
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=29.73 E-value=46 Score=34.17 Aligned_cols=56 Identities=18% Similarity=0.456 Sum_probs=35.0
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc-cc-----hhHHHHHHHHHHcCC
Q 047891 103 SGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY-NW-----EGYAELIQMVQKHGL 161 (551)
Q Consensus 103 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-dW-----s~Y~~l~~mv~~~GL 161 (551)
++++..+..+++-.++|+ .|+..|++|||=|- ...|-.| ++ =..+++++.|+++..
T Consensus 23 g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg~--dgePvV~HG~tlts~i~f~dv~~~I~~~aF 84 (229)
T cd08592 23 GDQLSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPIIYHGHTLTSKIKFMDVLKTIKEHAF 84 (229)
T ss_pred CCccCCccCHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCCcCHHHHHHHHHHHhc
Confidence 457777777777777776 99999999999552 1112221 11 234666666666654
No 189
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=29.59 E-value=1.1e+02 Score=30.15 Aligned_cols=82 Identities=10% Similarity=0.087 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCceeecccccccChhHHHHHHHhcCCCCCCC
Q 047891 405 IPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNG 484 (551)
Q Consensus 405 ~~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~a~~qi~~~~~~~~~~~ 484 (551)
..+.+.++++|..+.+.+++..|-... ....|+..+++|+..++.-.|-|.=.+.. ...++..+|+..++.
T Consensus 142 ~~~~~~l~~~Gy~~v~w~v~~~Dw~~~--~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~----- 212 (224)
T TIGR02884 142 ERTLAYTKELGYYTVFWSLAFKDWKVD--EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKE----- 212 (224)
T ss_pred HHHHHHHHHcCCcEEeccccCcccCCC--CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHH-----
Confidence 347888999999999999988776532 12457888899887665444555433221 135689999988774
Q ss_pred ccceEEeccCcc
Q 047891 485 LSAFTYLRMNKK 496 (551)
Q Consensus 485 ~~~FTylRm~~~ 496 (551)
.+|+|.++.+.
T Consensus 213 -~Gy~fvtl~el 223 (224)
T TIGR02884 213 -QGYTFKSLDDL 223 (224)
T ss_pred -CCCEEEEhHHc
Confidence 24777777653
No 190
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=29.56 E-value=1.2e+02 Score=31.97 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChh
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPW 187 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~W 187 (551)
+.+...+.|+.+|++|+.. +||. .|.-+-= --..|.++.++.|+.|++.=.|| ...-.|.|
T Consensus 36 ~~~~~~~El~~~k~~Gg~t--------iVd~-T~~g~GR-d~~~l~~is~~tGv~II~~TG~y---------~~~~~p~~ 96 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRT--------IVDA-TPIGLGR-DVEALREISRRTGVNIIASTGFY---------KEPFYPEW 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEE--------EEE---SGGGTB--HHHHHHHHHHHT-EEEEEEEE----------SGGCSCHH
T ss_pred hHHHHHHHHHHHHHcCCCE--------EEec-CCcccCc-CHHHHHHHHHHhCCeEEEeCCCC---------ccccCChh
Confidence 7789999999999999876 3453 2322211 12677889999999995555555 22346788
Q ss_pred hH
Q 047891 188 VL 189 (551)
Q Consensus 188 V~ 189 (551)
+.
T Consensus 97 ~~ 98 (308)
T PF02126_consen 97 VR 98 (308)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 191
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=29.33 E-value=50 Score=39.70 Aligned_cols=67 Identities=33% Similarity=0.623 Sum_probs=46.6
Q ss_pred ccCHHHHHHHHHHH-----HHcC---cceEEEeeeeeccccCCCccc---cchhHH---HHHHHHHHcCCeEEEEEeeec
Q 047891 106 LNKPRAMNASLMAL-----KSAG---VEGVMVDAWWGLVEKDGPLNY---NWEGYA---ELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 106 ~~~~~~~~~~L~~L-----K~~G---VdGV~vdVWWGiVE~~~p~~Y---dWs~Y~---~l~~mv~~~GLKvqvvmsFHq 171 (551)
+++...+-.+|-.| -.+| +.-||+. .--...++-| +|.-|+ +|+++++++|.+++ =||.
T Consensus 532 L~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlG----YSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr---lFHG 604 (910)
T COG2352 532 LDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLG----YSDSNKDGGYLAANWALYKAQLALVELCEKAGVELR---LFHG 604 (910)
T ss_pred HhccHHHHHHHHcChHHHHHHcCCCCceEEEec----ccccccccchhhhHHHHHHHHHHHHHHHHHhCceEE---EEcc
Confidence 45555555554332 2344 7888884 4444445555 799886 58999999999985 4999
Q ss_pred cCCCCCCC
Q 047891 172 CGGNVGDS 179 (551)
Q Consensus 172 CGGNVGD~ 179 (551)
-||.||--
T Consensus 605 RGGtVGRG 612 (910)
T COG2352 605 RGGSVGRG 612 (910)
T ss_pred CCCCCCCC
Confidence 99999973
No 192
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.33 E-value=1.1e+02 Score=30.28 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccc--hhHHHHHHHHHHcCCeEEEEEeee
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW--EGYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW--s~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
+.++..++..+.+|++.|.+.-+-...++..+..+++ ...+++.+++++.|+++ .+-+|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l--~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML--AVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE--EEEec
Confidence 5578888899999999998632100011111111111 35788999999999988 77776
No 193
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=29.12 E-value=1e+02 Score=32.17 Aligned_cols=70 Identities=26% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCcceEEEeecceecCCCcccCHHHHHHHHHHHHH-cCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcC
Q 047891 86 RNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKS-AGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHG 160 (551)
Q Consensus 86 ~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~-~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~G 160 (551)
.++.+.-||.||.--+--++..+++.+...||+||- +--.|+. |+|||-|=..-.-..--+.++.|+++|
T Consensus 94 acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~-----GLVEPLGF~~csLRsk~eA~~aI~aa~ 164 (272)
T COG4130 94 ACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT-----GLVEPLGFRVCSLRSKAEAAEAIRAAG 164 (272)
T ss_pred hcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc-----ccccccCchhhhhhhHHHHHHHHHHhC
No 194
>PLN02417 dihydrodipicolinate synthase
Probab=29.10 E-value=2.2e+02 Score=29.25 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=53.5
Q ss_pred CCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEee--eeeccccCCCccccchhHHHHHHHHHHcCCeEE
Q 047891 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDA--WWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 87 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdV--WWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvq 164 (551)
..+||.+..-- ++.+..-...+..+++|+|+||+-- ++.. .. .+..+.|+-+.++.
T Consensus 69 ~~~pvi~gv~~---------~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~-----~~----~~i~~~f~~va~~~---- 126 (280)
T PLN02417 69 GKIKVIGNTGS---------NSTREAIHATEQGFAVGMHAALHINPYYGKT-----SQ----EGLIKHFETVLDMG---- 126 (280)
T ss_pred CCCcEEEECCC---------ccHHHHHHHHHHHHHcCCCEEEEcCCccCCC-----CH----HHHHHHHHHHHhhC----
Confidence 46787765432 2234555667788999999999832 2211 11 23333344444444
Q ss_pred EEEeeeccCCCCCCCCccCCChhhHHhhhcCCC-eEEeCCCCC
Q 047891 165 VVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPD-LVYTDKSGR 206 (551)
Q Consensus 165 vvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PD-i~ytD~~G~ 206 (551)
||+=++. .+ ...+.||.-+.....++|. +-++|.+|.
T Consensus 127 pi~lYn~----P~-~tg~~l~~~~l~~l~~~pni~giKdss~~ 164 (280)
T PLN02417 127 PTIIYNV----PG-RTGQDIPPEVIFKIAQHPNFAGVKECTGN 164 (280)
T ss_pred CEEEEEC----hh-HhCcCCCHHHHHHHhcCCCEEEEEeCCCc
Confidence 5665531 11 1235677777777778899 556888776
No 195
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=28.62 E-value=1.2e+02 Score=31.68 Aligned_cols=57 Identities=21% Similarity=0.457 Sum_probs=39.2
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc-cch-----hHHHHHHHHHHcCCe
Q 047891 103 SGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY-NWE-----GYAELIQMVQKHGLK 162 (551)
Q Consensus 103 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-dWs-----~Y~~l~~mv~~~GLK 162 (551)
++++.-...++.-.++|+ .|+..|++|||=|- ...|-.| ++. ..+++++.|++...+
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcR~vElD~w~g~--~gepvV~Hg~tlts~i~f~dv~~~I~~~aF~ 85 (260)
T cd08597 23 EDQLRGPSSVEGYVRALQ-RGCRCVELDCWDGP--NGEPVIYHGHTLTSKISFRSVIEAINEYAFV 85 (260)
T ss_pred CCeecCccCHHHHHHHHH-hCCCEEEEEeEcCC--CCCEEEEeCCccccceEHHHHHHHHHHHhcc
Confidence 456666677777677775 99999999999441 1112222 233 578999999998776
No 196
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.54 E-value=1.6e+02 Score=29.36 Aligned_cols=52 Identities=12% Similarity=-0.013 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHc-CCeE
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKH-GLKL 163 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKv 163 (551)
..++..|+.+|++|+++|.+.+=...-.. .+. .+=...+++.++++++ |+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~i 62 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL-SRP-LKKERAEKFKAIAEEGPSICL 62 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC-CCC-CCHHHHHHHHHHHHHcCCCcE
Confidence 56889999999999999998763211000 000 0115788899999999 7665
No 197
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=28.35 E-value=4.2e+02 Score=27.12 Aligned_cols=103 Identities=17% Similarity=0.392 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHh
Q 047891 112 MNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEE 191 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~ 191 (551)
....|+++.+.|.|+|+|. |-..-.-.--+++++.+|++.|-+ || | +|+...|.
T Consensus 16 ~~~~~~~~~~~gtdai~vG---------GS~~vt~~~~~~~v~~ik~~~lPv--il-f------p~~~~~i~-------- 69 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIG---------GSQGVTYEKTDTLIEALRRYGLPI--IL-F------PSNPTNVS-------- 69 (223)
T ss_pred cHHHHHHHHhcCCCEEEEc---------CCCcccHHHHHHHHHHHhccCCCE--EE-e------CCCccccC--------
Confidence 3458889999999999995 333345557889999999988666 55 7 23323331
Q ss_pred hhcCCC-eEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEecccCCC
Q 047891 192 ISKNPD-LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGPCG 261 (551)
Q Consensus 192 ~~~~PD-i~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~VGlGP~G 261 (551)
.+-| +||-.==..+|.+||- ....+-.. .+..+...+|.+-+|=++|.+
T Consensus 70 --~~aDa~l~~svlNs~~~~~ii---------------g~~~~~~~----~~~~~~~e~ip~gYiv~~~~~ 119 (223)
T TIGR01768 70 --RDADALFFPSVLNSDDPYWII---------------GAQIEAAP----KFKKIGEEIIPEGYIIVNPGG 119 (223)
T ss_pred --cCCCEEEEEEeecCCCchHHH---------------hHHHHHHH----HHhhhcceecceEEEEECCCc
Confidence 1123 5555555555555554 22222222 344444468999998899876
No 198
>PTZ00445 p36-lilke protein; Provisional
Probab=28.22 E-value=1.5e+02 Score=30.43 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=46.6
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccch------------hHHHHHHHHHHcCCeE
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWE------------GYAELIQMVQKHGLKL 163 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs------------~Y~~l~~mv~~~GLKv 163 (551)
.++..+....=.+.||+.||..|-+|.==-+|...+.|-.++. ..+++++.++++|++|
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v 94 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKI 94 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeE
Confidence 3566677777788899999999999976666665555655553 4788999999999999
No 199
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.12 E-value=1.5e+02 Score=32.99 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.+.++..+++..++||+.|.+-+--..++ -..+.++.++++|+.+++.+|+
T Consensus 95 ddvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 95 DDVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEe
Confidence 45678889999999999988876543332 3778999999999999988887
No 200
>PRK12568 glycogen branching enzyme; Provisional
Probab=27.99 E-value=1.6e+02 Score=35.12 Aligned_cols=59 Identities=12% Similarity=0.311 Sum_probs=40.2
Q ss_pred ccCHHHHHHH-HHHHHHcCcceEEEeeeeeccccCCCccccc-----------------hhHHHHHHHHHHcCCeEEEEE
Q 047891 106 LNKPRAMNAS-LMALKSAGVEGVMVDAWWGLVEKDGPLNYNW-----------------EGYAELIQMVQKHGLKLQVVM 167 (551)
Q Consensus 106 ~~~~~~~~~~-L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-----------------s~Y~~l~~mv~~~GLKvqvvm 167 (551)
.-+.+.+... |..||++||+.|.+-= +.|. |....| ..++++++.++++||+|..=+
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmP---i~e~--~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLP---ITEH--PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECc---cccC--CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3456777777 5999999999997632 1221 212222 358999999999999994444
Q ss_pred ee
Q 047891 168 SF 169 (551)
Q Consensus 168 sF 169 (551)
-+
T Consensus 340 V~ 341 (730)
T PRK12568 340 VS 341 (730)
T ss_pred cc
Confidence 44
No 201
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.96 E-value=66 Score=33.07 Aligned_cols=58 Identities=9% Similarity=0.129 Sum_probs=39.4
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeeee-eccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 047891 104 GHLNKPRAMNASLMALKSAGVEGVMVDAWW-GLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVG 177 (551)
Q Consensus 104 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWW-GiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVG 177 (551)
..+.+...++ +.++.-++|+|.+|+=| |-+ +...+++++|+++|+++ +++.| |.+++|
T Consensus 235 E~~~~~~~~~---~~~~~~~~d~v~~~~~~~GGi----------~~~~~~~~~a~~~gi~~--~~~~~-~~~~i~ 293 (316)
T cd03319 235 ESCFSAADAA---RLAGGGAYDGINIKLMKTGGL----------TEALRIADLARAAGLKV--MVGCM-VESSLS 293 (316)
T ss_pred CCCCCHHHHH---HHHhcCCCCEEEEeccccCCH----------HHHHHHHHHHHHcCCCE--EEECc-hhhHHH
Confidence 3455555544 55677899999999764 322 23589999999999999 55544 354443
No 202
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.69 E-value=78 Score=34.15 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEE
Q 047891 112 MNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqv 165 (551)
+.+.|+.+++.|+++|-.+. |.++-....+ .. -..++++.++++||+|+|
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~-~~l~~~~~~~--~~-~~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPI-WMLVDPDENG--KI-VPSEYAKAAKAAGLDIIT 296 (356)
T ss_pred HHHHHHHHHhCCccEecCch-hhcccccccc--cc-CCHHHHHHHHHcCCEEEE
Confidence 55779999999999866543 3333322222 22 567899999999999943
No 203
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=27.52 E-value=2.3e+02 Score=28.92 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeccccCCCccccchhHHHHHHHHHH-cCCeEEEEEeeeccCC
Q 047891 110 RAMNASLMALKSAGVEGVMVDAW-WGLVEKDGPLNYNWEGYAELIQMVQK-HGLKLQVVMSFHQCGG 174 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~-~GLKvqvvmsFHqCGG 174 (551)
+.....+++|+++|++.|.+|.= |...-. + ..++....+++.+.+.+ .|-. ...|-||+
T Consensus 151 ~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~----~~lHic~~ 211 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGD----VEVHLCAP 211 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCc----eEEEECCC
Confidence 45667888999999999999874 654432 1 45788888888888876 3322 24688987
No 204
>PRK12677 xylose isomerase; Provisional
Probab=27.36 E-value=1.4e+02 Score=32.47 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCcceEEEee---e-eeccccCCCccccchhHHHHHHHHHHcCCeEE
Q 047891 111 AMNASLMALKSAGVEGVMVDA---W-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 111 ~~~~~L~~LK~~GVdGV~vdV---W-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvq 164 (551)
.+..-+.+++++|++||++.. | |+.-.. ..+ ...+++.++++++||+|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVVP 84 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCeeE
Confidence 477889999999999998831 2 322211 011 147889999999999983
No 205
>PLN02433 uroporphyrinogen decarboxylase
Probab=27.29 E-value=96 Score=32.66 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=48.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCCcccc---chhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHH
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLE 190 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~ 190 (551)
.-+++..++|++.|.+.-=|+-+ -+|.+|+ |-+.+++++-+++.+-.+ -...|.||.. ++-.++.
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG~~-------~~~~~~~- 250 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANGSG-------GLLERLA- 250 (345)
T ss_pred HHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCCCH-------HHHHHHH-
Confidence 33445667999999765546643 3577777 999999999999863222 2345889741 3333443
Q ss_pred hhhcCCCeEEeCCC
Q 047891 191 EISKNPDLVYTDKS 204 (551)
Q Consensus 191 ~~~~~PDi~ytD~~ 204 (551)
+...|++-.|..
T Consensus 251 --~~~~~~i~~d~~ 262 (345)
T PLN02433 251 --GTGVDVIGLDWT 262 (345)
T ss_pred --hcCCCEEEcCCC
Confidence 334466665554
No 206
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=27.19 E-value=2.2e+02 Score=34.31 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=37.3
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeE
Q 047891 104 GHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 104 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
|...+.++++++|+.||++|++-|++. +.=|. .+..++|-+.||=|
T Consensus 315 G~~~~~~~~~~dl~lmk~~n~N~vRts---HyP~~-----------~~~ydLcDelGllV 360 (808)
T COG3250 315 GRVTDEDAMERDLKLMKEANMNSVRTS---HYPNS-----------EEFYDLCDELGLLV 360 (808)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEec---CCCCC-----------HHHHHHHHHhCcEE
Confidence 567789999999999999999999875 44443 35667888999888
No 207
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=27.11 E-value=1.8e+02 Score=30.21 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=48.0
Q ss_pred HHHHHHHHH---HcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCC------CCCcc
Q 047891 112 MNASLMALK---SAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVG------DSCTI 182 (551)
Q Consensus 112 ~~~~L~~LK---~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVG------D~~~I 182 (551)
++.++.+|| ++|++.+..-. -||-+.|.+..+.+++.|+++-++-.+=-+. |.. .-|.|
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~-----------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~-s~~~~~~~~~~~Gi 214 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQL-----------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPIN-NYASFLRRAKWSKT 214 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccc-----------eecHHHHHHHHHHHHHcCCCCCEEeeccccC-CHHHHHHHHhcCCC
Confidence 445555555 49999887543 4788999999999999988875544332221 011 12668
Q ss_pred CCChhhHHhhhc
Q 047891 183 PLPPWVLEEISK 194 (551)
Q Consensus 183 pLP~WV~~~~~~ 194 (551)
.+|.||.+..++
T Consensus 215 ~vP~~l~~~l~~ 226 (281)
T TIGR00677 215 KIPQEIMSRLEP 226 (281)
T ss_pred CCCHHHHHHHHh
Confidence 899999987653
No 208
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=27.08 E-value=2.1e+02 Score=26.19 Aligned_cols=26 Identities=15% Similarity=0.067 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeee
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWG 134 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWG 134 (551)
.+......+.++++|+|+|++..-++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~ 89 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIG 89 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHH
Confidence 57777888999999999999976554
No 209
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=26.93 E-value=1.8e+02 Score=28.65 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=42.8
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
.+.+.+.+.+++||+. +|-|.+-.=||.-....|. ..-+++++.+-+.|..+ |++-|.
T Consensus 159 ~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~----~~~~~la~~l~~~G~D~--IiG~H~ 216 (239)
T cd07381 159 LDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPT----PEQRELARALIDAGADL--VIGHHP 216 (239)
T ss_pred cCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCC----HHHHHHHHHHHHCCCCE--EEcCCC
Confidence 3568899999999998 9999999999974322232 23356666666789888 888883
No 210
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.90 E-value=2e+02 Score=22.70 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEE
Q 047891 112 MNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqv 165 (551)
++.-++++|+.|++.|-+ .+-. +..++.++.+.+++.|+++.+
T Consensus 17 ~~~~~~~a~~~g~~~v~i------TDh~-----~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIAI------TDHG-----NLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEEE------eeCC-----cccCHHHHHHHHHHcCCeEEE
Confidence 667889999999999965 3331 567788899999999998843
No 211
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=26.81 E-value=3.6e+02 Score=26.32 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeee----eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccC
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAW----WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIP 183 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVW----WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~Ip 183 (551)
+.+.++..+++++..|++.|.+-+= .-..--....+...+-..++++.+++.|+++..-+-. ..-.
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~----------~~~~ 134 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCED----------ASRT 134 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETT----------TGGS
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccc----------cccc
Q ss_pred CChhhHH----hhhcCCC-eEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhh
Q 047891 184 LPPWVLE----EISKNPD-LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRD 244 (551)
Q Consensus 184 LP~WV~~----~~~~~PD-i~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~ 244 (551)
=|..+.+ ..+..+| |.+.|-.|. -+| ..+.++.+.+++++.+
T Consensus 135 ~~~~~~~~~~~~~~~g~~~i~l~Dt~G~------------------~~P-~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 135 DPEELLELAEALAEAGADIIYLADTVGI------------------MTP-EDVAELVRALREALPD 181 (237)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEEETTS-------------------S-H-HHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHcCCeEEEeeCccCC------------------cCH-HHHHHHHHHHHHhccC
No 212
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=26.63 E-value=1.6e+02 Score=31.71 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=48.0
Q ss_pred cCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchh-----HHHHHHHHHHcCCeEEEEEeee
Q 047891 101 SNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEG-----YAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 101 ~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
.--|.+.+++++..--+.||++|.+.+...+| +..-.-|.|.| |+-|.+.+++.||.+ +-..|
T Consensus 98 AGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v--~tev~ 165 (335)
T PRK08673 98 AGPCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPI--VTEVM 165 (335)
T ss_pred EecCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcE--EEeeC
Confidence 33467789999999999999999997776666 32333355555 999999999999998 54553
No 213
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.54 E-value=1.8e+02 Score=32.39 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=39.1
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCC-------ccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGP-------LNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
..|+.||++|+..|.+.+ |...+ +..+.+.+.+.+++++++|+++.+-+=+
T Consensus 288 ell~~l~~aG~~~v~iGi-----ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGT-----EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred HHHHHHHHhCCcEEEEcc-----ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 467899999999988864 54332 4567888999999999999987554444
No 214
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=26.38 E-value=1.3e+02 Score=31.41 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeE
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
++++.-|+.+|++|.+.|++.- |-=-.+=+.-.+|++++.+.|+++
T Consensus 90 ~kvdeyl~e~~~lGfe~iEIS~--------G~i~m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 90 DKVDEYLNEAKELGFEAIEISN--------GTIPMSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred ccHHHHHHHHHHcCccEEEecC--------CeeecchHHHHHHHHHHHhcccEE
Confidence 6788999999999999998852 333346678899999999999998
No 215
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=26.37 E-value=2e+02 Score=28.23 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccc----hhHHHHHHHHHHcCCeEEEEEeee
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW----EGYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW----s~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
+.+++.+...+.+|+..|. ++.|......+.+=.| +..+++++++++.|+++ .+-+|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~--~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l--~lE~~ 144 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVN--CLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTL--LIEPI 144 (254)
T ss_pred HHHHHHHHHHHHhCCCEEE--ECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEE--EEEEC
Confidence 5677788889999999775 5666543211111123 45788999999999887 66665
No 216
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=26.20 E-value=99 Score=35.17 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCcceEEEeee--ee-ccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc------
Q 047891 111 AMNASLMALKSAGVEGVMVDAW--WG-LVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT------ 181 (551)
Q Consensus 111 ~~~~~L~~LK~~GVdGV~vdVW--WG-iVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~------ 181 (551)
..+..|..|+..||+-|++.|= -- +.+. .-.-+-=..--+..++++++|+|| ++|---|-.|++..
T Consensus 196 ~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~-~~RGHtvedv~~a~rLlKd~GfKv----~~HiMpGLPgs~~erDl~~f 270 (515)
T COG1243 196 IDEEHLDQMLKYGVTRVELGVQSIYDDVLER-TKRGHTVEDVVEATRLLKDAGFKV----GYHIMPGLPGSDFERDLESF 270 (515)
T ss_pred cCHHHHHHHHhcCCcEEEEeeeeHHHHHHHH-hcCCccHHHHHHHHHHHHhcCcEE----EEEecCCCCCCChHHHHHHH
Confidence 4578899999999999999985 22 2333 444455555667788999999998 67766776666543
Q ss_pred ---cCCChhhHHhhhcCCCeEEeC
Q 047891 182 ---IPLPPWVLEEISKNPDLVYTD 202 (551)
Q Consensus 182 ---IpLP~WV~~~~~~~PDi~ytD 202 (551)
+-.|.|-.+.-+-+|-+.+.+
T Consensus 271 ~~~f~~p~f~PDmlKIYPtLVi~g 294 (515)
T COG1243 271 REIFEDPRFRPDMLKIYPTLVIEG 294 (515)
T ss_pred HHHHhCCCCCCCeEEEeeeEEECC
Confidence 344555555556666666655
No 217
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=25.81 E-value=2.4e+02 Score=26.69 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=47.5
Q ss_pred EEeceeeeccCCCCChhh-h---hcccccCCCCCChHHHHHHHHHcCcEEEEEecccCCCCC---CCCCCCChHHHHHHH
Q 047891 373 GKVAGIHWHYRSRSHAAE-L---TAGYYNTRYRDGYIPIARMLAKHGVILNFTCMEMRDTEQ---PGNANCSPEGLVRQV 445 (551)
Q Consensus 373 aKV~GIHWwy~t~SHaAE-L---TAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~eq---~~~~~s~Pe~Lv~QV 445 (551)
.++.|+||+|........ . .-|+ .....-|.++++.|++. +...+++++.... +.....+-+.+++.|
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~vv~~hG~--~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 11 VTVGPFHWHVQDMGPTAGPLLLLLHGT--GASTHSWRDLMPPLARS---FRVVAPDLPGHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred eeECCEEEEEEecCCCCCCeEEEEcCC--CCCHHHHHHHHHHHhhC---cEEEeecCCCCCCCCCccccCCCHHHHHHHH
Confidence 378999999987543211 1 1132 22344588999999874 4556677774332 222134678888888
Q ss_pred HHHHHHcCC
Q 047891 446 KMATRTAGV 454 (551)
Q Consensus 446 ~~aa~~~Gv 454 (551)
.+.....++
T Consensus 86 ~~~i~~~~~ 94 (278)
T TIGR03056 86 SALCAAEGL 94 (278)
T ss_pred HHHHHHcCC
Confidence 888776654
No 218
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=25.57 E-value=1.5e+02 Score=28.70 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcC
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHG 160 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~G 160 (551)
|++++++.++.||..||+.|-|--=|+.+-+. .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 58999999999999999999998888877653 3356777777765
No 219
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=25.30 E-value=1.6e+02 Score=31.43 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=41.5
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeee--eeccccCCCccccchhHHHHHHHHHHcCC
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAW--WGLVEKDGPLNYNWEGYAELIQMVQKHGL 161 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVW--WGiVE~~~p~~YdWs~Y~~l~~mv~~~GL 161 (551)
.+++-+.---++.+++|.||+|+.|. =...=.+++||.+...++++.+-++..+.
T Consensus 226 Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 226 GRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred cchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 34444455556778999999999998 33333468999999999999998887654
No 220
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=25.08 E-value=1.2e+02 Score=30.72 Aligned_cols=73 Identities=10% Similarity=0.158 Sum_probs=44.3
Q ss_pred CcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEE
Q 047891 88 KVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVV 166 (551)
Q Consensus 88 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvv 166 (551)
+++ |+++++.-+..+.-...+.+...++.+-.+|+++|.+-+.+|. + .+.++- .--.++.+.++++|+.+.++
T Consensus 70 ~~~--~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~-~--~~~~~~-~~~~~i~~~~~~~g~~liv~ 142 (258)
T TIGR01949 70 DVG--LIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS-D--TEWEQI-RDLGMIAEICDDWGVPLLAM 142 (258)
T ss_pred CCc--EEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCC-c--hHHHHH-HHHHHHHHHHHHcCCCEEEE
Confidence 445 5667753222221121224556688888999999999998874 1 112222 45566677778899988653
No 221
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=25.06 E-value=3.2e+02 Score=24.70 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=8.0
Q ss_pred cchhHHHHHHHHHHcC
Q 047891 145 NWEGYAELIQMVQKHG 160 (551)
Q Consensus 145 dWs~Y~~l~~mv~~~G 160 (551)
.++-+.+.++.++++|
T Consensus 134 ~~~~~~~~i~~~~~~g 149 (216)
T smart00729 134 TVEDVLEAVEKLREAG 149 (216)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3455555555555555
No 222
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=25.01 E-value=1.9e+02 Score=29.00 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=46.5
Q ss_pred EeecceecCCCcccCHHHHHHHHHHHH-----HcCcc----eEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEE
Q 047891 94 MLPLDTLSNSGHLNKPRAMNASLMALK-----SAGVE----GVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 94 MlPLd~V~~~~~~~~~~~~~~~L~~LK-----~~GVd----GV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvq 164 (551)
++|-+.| .+|.+.|.++...-|++|+ .+|.. .|.|+.++..+|+ +.+.+.++.+||++.
T Consensus 25 ~~~~~~~-~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 25 MQFADVV-RDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEVL 92 (239)
T ss_pred ecccccc-cCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCceE
Confidence 3444433 3578899999999999998 34653 5677888887776 578899999999995
Q ss_pred EEEe
Q 047891 165 VVMS 168 (551)
Q Consensus 165 vvms 168 (551)
.++.
T Consensus 93 ~li~ 96 (239)
T TIGR02529 93 HVLD 96 (239)
T ss_pred EEee
Confidence 5543
No 223
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=24.99 E-value=3.1e+02 Score=28.90 Aligned_cols=108 Identities=19% Similarity=0.107 Sum_probs=63.6
Q ss_pred HHHHHHHHcCcc-eEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCc--cCCChhhHH
Q 047891 114 ASLMALKSAGVE-GVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCT--IPLPPWVLE 190 (551)
Q Consensus 114 ~~L~~LK~~GVd-GV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~--IpLP~WV~~ 190 (551)
.-++.|+++|+. .|.++. ..|... .....+.++.++++|+.+..-.-.. .| |.|+.. ..|=.|+.+
T Consensus 188 ell~~L~~~g~~v~i~l~~-------~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl--~g-vNd~~~~l~~l~~~l~~ 256 (321)
T TIGR03822 188 ALIAALKTSGKTVYVALHA-------NHAREL-TAEARAACARLIDAGIPMVSQSVLL--RG-VNDDPETLAALMRAFVE 256 (321)
T ss_pred HHHHHHHHcCCcEEEEecC-------CChhhc-CHHHHHHHHHHHHcCCEEEEEeeEe--CC-CCCCHHHHHHHHHHHHh
Confidence 445678888843 233333 234443 4778888899999999885433332 22 456543 334455654
Q ss_pred hhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhh
Q 047891 191 EISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYL 246 (551)
Q Consensus 191 ~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l 246 (551)
.+-.-.-++..|..+...+ -++|.+.+.++|+..+.....|.
T Consensus 257 ~gv~pyyl~~~~p~~g~~~--------------f~~~~~~~~~i~~~l~~~~~g~~ 298 (321)
T TIGR03822 257 CRIKPYYLHHLDLAPGTAH--------------FRVTIEEGQALVRALRGRISGLA 298 (321)
T ss_pred cCCeeEEEEecCCCCCccc--------------ccCcHHHHHHHHHHHHHhCCCCc
Confidence 4322222444455533222 24568999999999999988875
No 224
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=24.80 E-value=1.9e+02 Score=27.84 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeee
Q 047891 112 MNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
.++-++.++++||+.|.+--+. +..++.+.+++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 5667788899999998743221 245677889999999 998888887
No 225
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.66 E-value=56 Score=34.00 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=42.3
Q ss_pred HHHHHHHHcCcceEEEeeeeeccccCCCcccc--chhHHHH-HHHHHHcCCeEEEEEeee
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN--WEGYAEL-IQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd--Ws~Y~~l-~~mv~~~GLKvqvvmsFH 170 (551)
.+|.+|+..||++|-.-..|= ++...++.|- |+-...+ ..-+.++|||+.+-+..|
T Consensus 15 eDlekMa~sGI~~Vit~AhdP-~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 15 EDLEKMALSGIREVITLAHDP-YPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred HHHHHHHHhChhhhhhcccCC-CCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccC
Confidence 589999999999999988887 6665666542 2222222 344789999999999999
No 226
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=24.63 E-value=1.3e+02 Score=31.47 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccc--cCCC-ccccchhHHHHHHHHHHcCCeE--EEEEeee
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVE--KDGP-LNYNWEGYAELIQMVQKHGLKL--QVVMSFH 170 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE--~~~p-~~YdWs~Y~~l~~mv~~~GLKv--qvvmsFH 170 (551)
+.+|+.||..+||.|.+|.. |.=| +.-= ..+.=.-|.+.+.++++.|++| ++++..|
T Consensus 100 E~~~eklk~~~vdvvsLDfv-gDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~ 161 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFV-GDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLD 161 (275)
T ss_pred HHHHHHHHHhcCcEEEEeec-CChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEec
Confidence 67899999999999999975 2111 0000 1122346999999999999999 4555554
No 227
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=24.46 E-value=2e+02 Score=31.09 Aligned_cols=90 Identities=20% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhH
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVL 189 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~ 189 (551)
++++.|++.|.+-|||++-+.-.--+.|- ++++..+++. .+.-.+-||.++
T Consensus 143 ~ay~eq~~~Li~gG~D~iLiET~~D~l~~-----------KaA~~a~~~~-----------------~~~~~~~LPv~~- 193 (311)
T COG0646 143 EAYREQVEGLIDGGADLILIETIFDTLNA-----------KAAVFAAREV-----------------FEELGVRLPVMI- 193 (311)
T ss_pred HHHHHHHHHHHhCCCcEEEEehhccHHHH-----------HHHHHHHHHH-----------------HHhcCCcccEEE-
Q ss_pred HhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEecccC
Q 047891 190 EEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLGP 259 (551)
Q Consensus 190 ~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~VGlGP 259 (551)
...++| +|+ .+.|.|| .+|+.+++.. +-.+..++-++||
T Consensus 194 -------s~Ti~~-sG~--------------tl~Gq~~----~a~~~~l~~~-----~~~~vGlNCa~Gp 232 (311)
T COG0646 194 -------SGTITD-SGR--------------TLSGQTI----EAFLNSLEHL-----GPDAVGLNCALGP 232 (311)
T ss_pred -------EEEEec-Cce--------------ecCCCcH----HHHHHHhhcc-----CCcEEeeccccCH
No 228
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=24.44 E-value=1.9e+02 Score=29.64 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=49.5
Q ss_pred HHHHHHHHcCcceEEEeeeeecccc------CCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChh
Q 047891 114 ASLMALKSAGVEGVMVDAWWGLVEK------DGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPW 187 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWGiVE~------~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~W 187 (551)
++++...++|++.|.+-+ +.-|. ...-...+....++++.+++.|+++.+.+.- . -. ..|..
T Consensus 75 ~di~~a~~~g~~~i~i~~--~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed--a-------~r-~~~~~ 142 (262)
T cd07948 75 DDARIAVETGVDGVDLVF--GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED--S-------FR-SDLVD 142 (262)
T ss_pred HHHHHHHHcCcCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe--e-------CC-CCHHH
Confidence 357777889999888754 21110 0122345777888999999999999776642 1 11 12667
Q ss_pred hHHhhh----cCCC-eEEeCCCCC
Q 047891 188 VLEEIS----KNPD-LVYTDKSGR 206 (551)
Q Consensus 188 V~~~~~----~~PD-i~ytD~~G~ 206 (551)
|.+..+ ..+| |.+.|-.|.
T Consensus 143 l~~~~~~~~~~g~~~i~l~Dt~G~ 166 (262)
T cd07948 143 LLRVYRAVDKLGVNRVGIADTVGI 166 (262)
T ss_pred HHHHHHHHHHcCCCEEEECCcCCC
Confidence 765322 2344 566666664
No 229
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.39 E-value=1.6e+02 Score=29.55 Aligned_cols=59 Identities=12% Similarity=0.239 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc--chhHHHHHHHHHHcCCeEEEEEeee
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN--WEGYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd--Ws~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
+.++..++..+.+|+..|.+.-....-+...+..++ -+.+++++++++++|+++ .|-.|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l--~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTL--AVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEE--EEeeC
Confidence 457888999999999988653210001111111122 245678999999999988 66655
No 230
>PRK05926 hypothetical protein; Provisional
Probab=24.29 E-value=77 Score=34.28 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCcceEEEeee----eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 112 MNASLMALKSAGVEGVMVDAW----WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~vdVW----WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.+..|++||++|++-+-..-+ .-+-+.-.|++-....+.+..++++++||++-.-|=|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~ 229 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLC 229 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEE
Confidence 467799999999987664301 1112223467777888899999999999999444444
No 231
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.22 E-value=5.6e+02 Score=27.66 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCcceEEEeeeeecc--cc--CCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChh
Q 047891 112 MNASLMALKSAGVEGVMVDAWWGLV--EK--DGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPW 187 (551)
Q Consensus 112 ~~~~L~~LK~~GVdGV~vdVWWGiV--E~--~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~W 187 (551)
...+++++.++|++.|.+-+--..+ +. .......++...+.++.+++.|+++++..- |... .-|..
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e---------d~~r-~~~~~ 146 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE---------DASR-TDLDF 146 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec---------cCCC-CCHHH
Confidence 3556888889999988776532221 10 112344678889999999999999854311 2222 34667
Q ss_pred hHHhhh----cCCC-eEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHHHHHH
Q 047891 188 VLEEIS----KNPD-LVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERF 242 (551)
Q Consensus 188 V~~~~~----~~PD-i~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f 242 (551)
+.+..+ ..+| |.+.|-.|. -|| ..+.++.+.+++++
T Consensus 147 l~~~~~~~~~~Ga~~I~l~DT~G~------------------~~P-~~v~~lv~~l~~~~ 187 (378)
T PRK11858 147 LIEFAKAAEEAGADRVRFCDTVGI------------------LDP-FTMYELVKELVEAV 187 (378)
T ss_pred HHHHHHHHHhCCCCEEEEeccCCC------------------CCH-HHHHHHHHHHHHhc
Confidence 766432 2223 555565553 456 44556777777654
No 232
>PRK08508 biotin synthase; Provisional
Probab=23.94 E-value=2.4e+02 Score=29.01 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEE-eeeeeccccCCCccccchhHHHHHHHHHHcCCeEEE
Q 047891 108 KPRAMNASLMALKSAGVEGVMV-DAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQV 165 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqv 165 (551)
+++.+.+..+.+++.|+..+.+ +-+= ++...++.+|.++++.+++.++++.+
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~------~~~~~~~e~~~ei~~~ik~~~p~l~i 93 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGR------GLDDKKLEYVAEAAKAVKKEVPGLHL 93 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccC------CCCcccHHHHHHHHHHHHhhCCCcEE
Confidence 5677888888888999988865 2111 12234889999999999998876643
No 233
>PLN03231 putative alpha-galactosidase; Provisional
Probab=23.88 E-value=83 Score=34.24 Aligned_cols=47 Identities=36% Similarity=0.450 Sum_probs=34.4
Q ss_pred HHHHHcCcceEEEeeeeecccc----------------CCCcccc-----ch------hHHHHHHHHHHcCCeE
Q 047891 117 MALKSAGVEGVMVDAWWGLVEK----------------DGPLNYN-----WE------GYAELIQMVQKHGLKL 163 (551)
Q Consensus 117 ~~LK~~GVdGV~vdVWWGiVE~----------------~~p~~Yd-----Ws------~Y~~l~~mv~~~GLKv 163 (551)
+-||.+|-+.|.||.-|-.-++ .+-|+.- |- |.+.|++.|++.|||+
T Consensus 29 ~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GLKf 102 (357)
T PLN03231 29 ETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGLKL 102 (357)
T ss_pred cchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCcce
Confidence 3688999999999977754321 1223222 22 8999999999999998
No 234
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.86 E-value=2.4e+02 Score=28.98 Aligned_cols=80 Identities=10% Similarity=0.137 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhh
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWV 188 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV 188 (551)
.+..+.++++....|++.|.+-+-.. +.+--.+.++.+++.|+++++-+++= + ....-|..+
T Consensus 90 ~~~~~~di~~~~~~g~~~iri~~~~~----------~~~~~~~~i~~ak~~G~~v~~~i~~~-------~-~~~~~~~~~ 151 (275)
T cd07937 90 DDVVELFVEKAAKNGIDIFRIFDALN----------DVRNLEVAIKAVKKAGKHVEGAICYT-------G-SPVHTLEYY 151 (275)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeecCC----------hHHHHHHHHHHHHHCCCeEEEEEEec-------C-CCCCCHHHH
Confidence 45678899999999999988855322 25677888999999999997655541 1 122345666
Q ss_pred HHh----hhcCCC-eEEeCCCCC
Q 047891 189 LEE----ISKNPD-LVYTDKSGR 206 (551)
Q Consensus 189 ~~~----~~~~PD-i~ytD~~G~ 206 (551)
.+. .+.-+| |.+.|-.|.
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DT~G~ 174 (275)
T cd07937 152 VKLAKELEDMGADSICIKDMAGL 174 (275)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCC
Confidence 653 223344 556666665
No 235
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=23.76 E-value=2e+02 Score=28.88 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=39.0
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeecc
Q 047891 106 LNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQC 172 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqC 172 (551)
+.+.+.....|+.++++||..|. | +|.. +.++ +| +.+.+++++.|+++.+...+|.+
T Consensus 28 ~~~~~~~~~~~~~~~~~Gvttiv-~--~~~~---~~~~-~~---~~~~~~~~~~g~~v~~~~G~hp~ 84 (293)
T cd00530 28 LADVEAAKEELKRFRAHGGRTIV-D--ATPP---GIGR-DV---EKLAEVARATGVNIVAATGFYKD 84 (293)
T ss_pred hhhHHHHHHHHHHHHHcCCCeEE-E--cCCc---ccCc-CH---HHHHHHHHHhCCcEEEecccCCC
Confidence 45567788899999999998872 2 2211 0011 33 66778888999999888888743
No 236
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=23.73 E-value=18 Score=30.52 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCeEEEEEee
Q 047891 149 YAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 149 Y~~l~~mv~~~GLKvqvvmsF 169 (551)
-+++++.|++.|+||.|+=||
T Consensus 44 ~~~~l~~a~~~~~kv~p~C~y 64 (78)
T PF14542_consen 44 VEAALDYARENGLKVVPTCSY 64 (78)
T ss_dssp HHHHHHHHHHTT-EEEETSHH
T ss_pred HHHHHHHHHHCCCEEEEECHH
Confidence 467899999999999877666
No 237
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=23.72 E-value=74 Score=31.01 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCcceEEEee
Q 047891 110 RAMNASLMALKSAGVEGVMVDA 131 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdV 131 (551)
+++++.|+.|+++||+||+|.-
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~ 23 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN 23 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC
Confidence 5789999999999999999974
No 238
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=23.68 E-value=1.7e+02 Score=29.32 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=35.0
Q ss_pred HHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 115 SLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 115 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
+...||++|+++|.+. +++++|.=+--.+-++.+.++||+. |+|.
T Consensus 73 S~~mLkd~G~~~viiG--------HSERRf~Etdi~~Kv~~a~~~gl~~--IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLIN--------HSERRMKLADIEKKIARLKELGLTS--VVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEEC--------cccCCCCccHHHHHHHHHHHCCCEE--EEEE
Confidence 4678999999999995 4455566665677778899999987 7777
No 239
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=23.66 E-value=1.3e+02 Score=32.82 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=50.5
Q ss_pred CCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEee---------------------eeec--cccCCCcc
Q 047891 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDA---------------------WWGL--VEKDGPLN 143 (551)
Q Consensus 87 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdV---------------------WWGi--VE~~~p~~ 143 (551)
..-|+|+-+-+.. +-+|.++ .=.+-+++.|++|+|.|-.-- ||+. -|--..-.
T Consensus 11 ~~~~~~iIAEig~-NHnG~le---~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~ 86 (347)
T COG2089 11 KDKKPFIIAEIGA-NHNGDLE---RAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAE 86 (347)
T ss_pred CCCCcEEEeeecc-cccCcHH---HHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhc
Confidence 3557777777763 4445553 334457788899999998766 6662 22222345
Q ss_pred ccchhHHHHHHHHHHcCCeE
Q 047891 144 YNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 144 YdWs~Y~~l~~mv~~~GLKv 163 (551)
.+|+|+.+|++.|++.|+-+
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~ 106 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIF 106 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEE
Confidence 78999999999999999744
No 240
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.48 E-value=4.8e+02 Score=27.73 Aligned_cols=95 Identities=13% Similarity=0.216 Sum_probs=53.4
Q ss_pred ccCHHHHHHHHHHHHHcCc--ceEEEeee--------eec---cccCC--C---ccccc------hhHHHHHHHHHHcCC
Q 047891 106 LNKPRAMNASLMALKSAGV--EGVMVDAW--------WGL---VEKDG--P---LNYNW------EGYAELIQMVQKHGL 161 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~GV--dGV~vdVW--------WGi---VE~~~--p---~~YdW------s~Y~~l~~mv~~~GL 161 (551)
..+.+.+..-++.+++.|+ |+|.+|.| |.. ++..+ + +.++| --.+++++-+++.|+
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~ 99 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGV 99 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCC
Confidence 3567889999999999885 88989842 111 11111 1 11222 246899999999999
Q ss_pred eEEEEEeeeccCCCCCCCCccCCChhh-HHhhhcCCCeEEeCCCCC
Q 047891 162 KLQVVMSFHQCGGNVGDSCTIPLPPWV-LEEISKNPDLVYTDKSGR 206 (551)
Q Consensus 162 KvqvvmsFHqCGGNVGD~~~IpLP~WV-~~~~~~~PDi~ytD~~G~ 206 (551)
|+ ++..|-. |.-++.+.-..+. .+++.+. +++.+|.+|.
T Consensus 100 kv--~l~v~P~---i~~~~~~~~~~~~~~~~~~~~-g~~vk~~~G~ 139 (340)
T cd06597 100 KV--LLWQIPI---IKLRPHPHGQADNDEDYAVAQ-NYLVQRGVGK 139 (340)
T ss_pred EE--EEEecCc---cccccccccccchhHHHHHHC-CEEEEcCCCC
Confidence 99 4444311 0000100001111 1233344 7899999886
No 241
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=23.40 E-value=2.2e+02 Score=22.41 Aligned_cols=42 Identities=33% Similarity=0.700 Sum_probs=31.8
Q ss_pred cCCeEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCC
Q 047891 159 HGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGR 206 (551)
Q Consensus 159 ~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~ 206 (551)
.|+-+ +-+.=+.|+| |.+.||+=+..+.++..+|.+.+.-|+
T Consensus 13 ~g~~v-a~v~~~~C~g-----C~~~l~~~~~~~i~~~~~i~~Cp~CgR 54 (56)
T PF02591_consen 13 GGVAV-ARVEGGTCSG-----CHMELPPQELNEIRKGDEIVFCPNCGR 54 (56)
T ss_pred CCcEE-EEeeCCccCC-----CCEEcCHHHHHHHHcCCCeEECcCCCc
Confidence 45555 4455589999 999999866666666668999998886
No 242
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.23 E-value=2.4e+02 Score=27.93 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeecc-ccCCCccccchh----HHHHHHHHHHcCCeEEEEEeee
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLV-EKDGPLNYNWEG----YAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiV-E~~~p~~YdWs~----Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
+.+++-++..+.+|+..|.+ .||.. +...+.+ .|.. .+++.+++++.|+++ .+-.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~--~~g~~~~~~~~~~-~~~~~~~~l~~l~~~a~~~Gv~l--~lE~~ 145 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINC--LVGKTPAGFSSEQ-IHATLVENLRYAANMLMKEDILL--LIEPI 145 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEE--CCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHcCCEE--EEEeC
Confidence 55788888999999998865 34432 1111122 1433 377788899999887 66664
No 243
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.17 E-value=2.2e+02 Score=27.37 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=39.2
Q ss_pred HHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeecc
Q 047891 115 SLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQC 172 (551)
Q Consensus 115 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqC 172 (551)
++.+||+.||++|.+=+.-|. .|.=..|.+-++-|+++||++-+..=++.|
T Consensus 16 d~~~vk~~gi~fviiKateG~-------~~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~ 66 (191)
T cd06413 16 DWARVRAQGVSFAYIKATEGG-------DHVDKRFAENWRGARAAGLPRGAYHFFTFC 66 (191)
T ss_pred CHHHHHhCCCcEEEEEEcCCC-------CccCHHHHHHHHHHHHcCCceEEEEEEecC
Confidence 477889999999999985332 234467888888999999999777666543
No 244
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.10 E-value=2.8e+02 Score=28.88 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=48.3
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeee
Q 047891 104 GHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 104 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
|.+..++++..--+.+|++|+.-+.-..|==..-+.+-+-....+++.|.+.+++.||.+ +-..|
T Consensus 23 C~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~--~Tev~ 87 (250)
T PRK13397 23 CSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLS--VSEIM 87 (250)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 667889999988899999999999998885221111122223468999999999999998 44544
No 245
>PRK03705 glycogen debranching enzyme; Provisional
Probab=23.03 E-value=1.1e+02 Score=35.58 Aligned_cols=51 Identities=18% Similarity=0.537 Sum_probs=35.4
Q ss_pred HHHHHHHcCcceEEEe-e----------------eeec-------cccCCCcccc------chhHHHHHHHHHHcCCeEE
Q 047891 115 SLMALKSAGVEGVMVD-A----------------WWGL-------VEKDGPLNYN------WEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 115 ~L~~LK~~GVdGV~vd-V----------------WWGi-------VE~~~p~~Yd------Ws~Y~~l~~mv~~~GLKvq 164 (551)
.|..||++||+.|.+- | .||. +|+ .|- =..+++|++-+++.||+|.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~----~ygt~~~~~~~efk~LV~~~H~~GI~VI 259 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP----AYASGPETALDEFRDAVKALHKAGIEVI 259 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc----ccCCCCcchHHHHHHHHHHHHHCCCEEE
Confidence 4899999999999762 2 2442 221 111 1258999999999999996
Q ss_pred EEEee
Q 047891 165 VVMSF 169 (551)
Q Consensus 165 vvmsF 169 (551)
.=+-|
T Consensus 260 lDvV~ 264 (658)
T PRK03705 260 LDVVF 264 (658)
T ss_pred EEEcc
Confidence 55555
No 246
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=22.89 E-value=1.4e+02 Score=31.71 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 047891 110 RAMNASLMALKSAGVEGVMVDAW-WGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVG 177 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVG 177 (551)
++++..+++|.++|++.|-+|.= |...= .. .=+.|.++++.+-+ |++.. .+.|-|-||-+
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~~~----~~-~~~~~v~~~n~~~~-g~~~~--v~~HvC~G~~~ 216 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNVFF----DE-VNDWGVAALERAIE-GLKCE--TAVHICYGYGI 216 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhhhh----HH-HHHHHHHHHHHHHc-CCCCc--eEEEEeCCCCC
Confidence 45678889999999999999966 66311 00 13455555555554 66754 44599988863
No 247
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=22.88 E-value=2.8e+02 Score=28.66 Aligned_cols=52 Identities=23% Similarity=0.153 Sum_probs=37.5
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeecc
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQC 172 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqC 172 (551)
++.+++++.++.||+ ++|-|.|+.=||.-. +-.+|++...=++.+|++.|..
T Consensus 125 ~P~~~~~~~v~~lk~-~~D~IIV~~H~g~ts-------------Ek~ala~~ldg~VdvIvGtHTH 176 (255)
T cd07382 125 NPFRAADELLEELKE-EADIIFVDFHAEATS-------------EKIALGWYLDGRVSAVVGTHTH 176 (255)
T ss_pred CHHHHHHHHHHHHhc-CCCEEEEEECCCCCH-------------HHHHHHHhCCCCceEEEeCCCC
Confidence 346778999999998 999999999997521 2223445444457779999954
No 248
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=22.83 E-value=1.6e+02 Score=33.00 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeee
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFH 170 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFH 170 (551)
+.+.+.+..+.++++|...||+++.+| |++.+.|.+.+++.+|-|+.=-++|
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccc
Confidence 378999999999999999999997664 4556777777778877665544444
No 249
>PRK10426 alpha-glucosidase; Provisional
Probab=22.83 E-value=4.2e+02 Score=30.88 Aligned_cols=87 Identities=18% Similarity=0.362 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcC--cceEEEeeeeecccc-CCCc---cccc-----hhHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 047891 109 PRAMNASLMALKSAG--VEGVMVDAWWGLVEK-DGPL---NYNW-----EGYAELIQMVQKHGLKLQVVMSFHQCGGNVG 177 (551)
Q Consensus 109 ~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~-~~p~---~YdW-----s~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVG 177 (551)
.+.+..-++.+++.| +|+|.+|-|-+.-.. .+.. .|.| ..-+++++-.++.|+|+.+++-=|
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~------- 292 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPY------- 292 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCc-------
Confidence 567888899999987 688888876443221 1111 1222 345788888999999995544332
Q ss_pred CCCccCCChhhHHhhhcCCCeEEeCCCCCc
Q 047891 178 DSCTIPLPPWVLEEISKNPDLVYTDKSGRR 207 (551)
Q Consensus 178 D~~~IpLP~WV~~~~~~~PDi~ytD~~G~r 207 (551)
|..-.-+-+++.+. +.+.+|.+|..
T Consensus 293 ----v~~~~~~y~e~~~~-gy~vk~~~g~~ 317 (635)
T PRK10426 293 ----LASDGDLCEEAAEK-GYLAKDADGGD 317 (635)
T ss_pred ----cCCCCHHHHHHHHC-CcEEECCCCCE
Confidence 22212345666666 89999999874
No 250
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=22.76 E-value=3.2e+02 Score=29.36 Aligned_cols=86 Identities=17% Similarity=0.317 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHH--cCCeEEEEEeeeccCCCCCCCCccCCChh
Q 047891 110 RAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQK--HGLKLQVVMSFHQCGGNVGDSCTIPLPPW 187 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~--~GLKvqvvmsFHqCGGNVGD~~~IpLP~W 187 (551)
....+=+.+||++|++.|. |- -.--||.-+.+..+++.+ .|-+ .|+++.+ =|.|
T Consensus 110 ~~~~~l~~~lk~lGf~~v~--------et--~~~ad~~~~e~~~e~i~~~~~~~~-~p~itS~-------------CP~~ 165 (374)
T TIGR02512 110 DVTGKMVAALRKLGFDYVF--------DT--NFAADLTIMEEGTELLERLKNGGK-LPMFTSC-------------CPGW 165 (374)
T ss_pred hHHHHHHHHHHHcCCCEEE--------EC--cHHHHHHHHHHHHHHHHHhhcCCC-CCeEecC-------------CHHH
Confidence 3456777888899998864 22 233477777666666653 2223 2566664 5999
Q ss_pred hHHhhhcCCCeEEeCCCCCcCccccccccCcccccCCCChhHHHHHHHHHH
Q 047891 188 VLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 238 (551)
Q Consensus 188 V~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF 238 (551)
|.=+-+.+|+++ ++|| | =++|++.--.++++.
T Consensus 166 v~~iek~~P~li----------~~ls------~---v~SP~~~~g~~iK~~ 197 (374)
T TIGR02512 166 VNYAEKYYPELL----------PNLS------S---CKSPQQMLGAVIKTY 197 (374)
T ss_pred HHHHHHHChhhh----------cccc------C---CCChHHHHHHHHHHH
Confidence 999888889753 4666 4 378999888877764
No 251
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.45 E-value=2.5e+02 Score=30.21 Aligned_cols=70 Identities=21% Similarity=0.382 Sum_probs=44.1
Q ss_pred ceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeee--eccccCCCc---------------------cccc
Q 047891 90 PVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWW--GLVEKDGPL---------------------NYNW 146 (551)
Q Consensus 90 pv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWW--GiVE~~~p~---------------------~YdW 146 (551)
|+||-+-+++ |-+| +.+...+-.++.|++|+|.|-.--|= .++.+..+. .+.+
T Consensus 1 ~~~iIAEiG~-NH~G---~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 76 (327)
T TIGR03586 1 PPFIIAELSA-NHNG---SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPW 76 (327)
T ss_pred CCEEEEEECC-CCCC---hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCH
Confidence 4566655553 2233 34566666778899999998776541 111111111 2336
Q ss_pred hhHHHHHHHHHHcCCeE
Q 047891 147 EGYAELIQMVQKHGLKL 163 (551)
Q Consensus 147 s~Y~~l~~mv~~~GLKv 163 (551)
++|.+|++.+++.||.+
T Consensus 77 e~~~~L~~~~~~~Gi~~ 93 (327)
T TIGR03586 77 EWHKELFERAKELGLTI 93 (327)
T ss_pred HHHHHHHHHHHHhCCcE
Confidence 77889999999999997
No 252
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=22.31 E-value=1.6e+02 Score=29.84 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=44.5
Q ss_pred HHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCceeeccccc---ccChhHHHH
Q 047891 406 PIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVELAGENALE---RYDADAYAQ 472 (551)
Q Consensus 406 ~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~---~~d~~a~~q 472 (551)
.+++|+ .+|....++|+.-.--...---..--+.++..+....++.||.++|||.-- .+|.--|.+
T Consensus 125 ~l~e~i-~~Gf~aiIv~v~~~gL~~~~LGr~id~~~~~~L~~l~~~~gid~~GEgGEyhT~V~d~PlF~~ 193 (222)
T TIGR00289 125 KLMYEV-AEKFEVIIVSVSAMGLDESWLGRRIDKECIDDLKRLNEKYGIHLAFEGGEAETLVLDAPLFKK 193 (222)
T ss_pred HHHHHH-HcCCeEEEEEEccCCCChHHcCCccCHHHHHHHHHHHhhcCccccCCCceEEEEEEeccccCc
Confidence 345655 799999999986432111011123335788899999999999999999865 456555554
No 253
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.26 E-value=3.2e+02 Score=25.47 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=36.9
Q ss_pred HHHHHHHHcCcEEEEE---ecc-c----CCCCCCCCCCCChHHHHHHHHHHHHHcCCceeecccccccChhHHH
Q 047891 406 PIARMLAKHGVILNFT---CME-M----RDTEQPGNANCSPEGLVRQVKMATRTAGVELAGENALERYDADAYA 471 (551)
Q Consensus 406 ~Ia~mf~kh~~~l~FT---ClE-M----~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~a~~ 471 (551)
.++++|++-+++-..- |-- + +.. ++..+.-. ..|+.++.++|++.||++-.-=... +|...+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~-~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~ 74 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKV-GPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAE 74 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCC-CcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHH
Confidence 5678888765543322 211 1 111 22333334 8999999999999999986543333 4444443
No 254
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=22.15 E-value=3.6e+02 Score=35.30 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=46.6
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc-------------chhHHHHHHHHHHcCCeEEEEEeeecc
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN-------------WEGYAELIQMVQKHGLKLQVVMSFHQC 172 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mv~~~GLKvqvvmsFHqC 172 (551)
..-+++.+.|-.||++||+.|-+.-.+--... +..-|| ...+++|++.++++||+|..=+-+.-+
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~g-s~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~ 832 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPILKARPG-STHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHM 832 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCcCCCCC-CCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 34688999999999999999988766542211 222333 456789999999999999555555333
No 255
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.98 E-value=1.8e+02 Score=26.14 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=32.0
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeE
Q 047891 106 LNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 163 (551)
..+++....-|+.++++|+.+|-+- ++ +.=.++.++++++|+++
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~----------~g----~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQ----------PG----AESEELIEAAREAGIRV 105 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE-----------TT----S--HHHHHHHHHTT-EE
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEE----------cc----hHHHHHHHHHHHcCCEE
Confidence 4678999999999999999987653 22 56689999999999998
No 256
>PF03799 FtsQ: Cell division protein FtsQ; InterPro: IPR005548 FtsQ is one of several cell division proteins. FtsQ interacts with other Fts proteins, reviewed in []. The precise function of FtsQ is unknown.; PDB: 2VH1_B 2VH2_B 2ALJ_A 1YR1_A.
Probab=21.82 E-value=1.6e+02 Score=24.93 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=37.3
Q ss_pred CeEEeCCCCCcCccccccccCcccccCCCChhHH-HHHHHHHHHHHHhhhhcCceeEEEe
Q 047891 197 DLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQV-YSDYMRSFRERFRDYLGDVVQEIQV 255 (551)
Q Consensus 197 Di~ytD~~G~rn~E~lSlg~D~~pvl~GRTpiq~-Y~dfm~SF~~~f~~~l~~~I~eI~V 255 (551)
..++.|++|..-..... ..+++|++.|-+.-+. -.++++.+..-... +...|++|.+
T Consensus 9 ~~~lvd~~G~v~~~~~~-~~~~lP~i~g~~~~~~~~~~~~~~l~~~~~~-~~~~i~~i~~ 66 (117)
T PF03799_consen 9 GYYLVDENGVVFEPEPE-PPPDLPLITGPEDSEKDLLELLRELAALPPP-LRSQISEISY 66 (117)
T ss_dssp EEEEEETTS-EECCCCT-TTTTS-EEESSTTHHHHHHHHHHHHHHHHHH-TTHS-SEEEE
T ss_pred ceEEECCCCeEEecCCC-CCCCCeEEECCCCchHHHHHHHHHHHHHHHH-HhceeeEEEE
Confidence 46899999998877433 4569999999875433 46666666555555 4568888854
No 257
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=21.76 E-value=6e+02 Score=25.73 Aligned_cols=111 Identities=24% Similarity=0.329 Sum_probs=61.4
Q ss_pred EEEeee--eeccccCC-CccccchhHH----HHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeE
Q 047891 127 VMVDAW--WGLVEKDG-PLNYNWEGYA----ELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLV 199 (551)
Q Consensus 127 V~vdVW--WGiVE~~~-p~~YdWs~Y~----~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ 199 (551)
+|+++= ||+||-.- -.+.-=.-++ ..++-+.+.+++ +|+-+|..=--+ +-.-.-||.||.++ .+||++
T Consensus 39 ~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~--iivDtH~~IkTP-~GylpgLP~~Vl~~--l~pd~i 113 (189)
T COG2019 39 LMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALE--IIVDTHATIKTP-AGYLPGLPSWVLEE--LNPDVI 113 (189)
T ss_pred HHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhc--eEEeccceecCC-CccCCCCcHHHHHh--cCCCEE
Confidence 455554 88888411 1111112222 233445555666 499999652211 11455699999975 567866
Q ss_pred EeCCC------------CCcCccccccccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEE
Q 047891 200 YTDKS------------GRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEI 253 (551)
Q Consensus 200 ytD~~------------G~rn~E~lSlg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI 253 (551)
..=+. -+|...+=| ---++.-.++-|.++-+.+-+.++++.=|
T Consensus 114 vllEaDp~~Il~RR~~D~~r~Rd~es-----------~e~i~eHqe~nR~aA~a~A~~~gatVkIV 168 (189)
T COG2019 114 VLLEADPEEILERRLRDSRRDRDVES-----------VEEIREHQEMNRAAAMAYAILLGATVKIV 168 (189)
T ss_pred EEEeCCHHHHHHHHhccccccccccc-----------HHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 64332 122222222 12356677777888888888888876555
No 258
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=21.76 E-value=3.8e+02 Score=27.65 Aligned_cols=144 Identities=17% Similarity=0.244 Sum_probs=87.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc--cchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCC
Q 047891 107 NKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY--NWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPL 184 (551)
Q Consensus 107 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpL 184 (551)
-|...+..+|+++.++|+|-+.+||= +|+| |.+-=-.+++.+|+. -++ .+..| --|.-
T Consensus 13 aD~~~l~~el~~~~~agad~iH~DVM--------DghFVPNiTfGp~~v~~l~~~-t~~--p~DvH---------LMV~~ 72 (220)
T COG0036 13 ADFARLGEELKALEAAGADLIHIDVM--------DGHFVPNITFGPPVVKALRKI-TDL--PLDVH---------LMVEN 72 (220)
T ss_pred CCHhHHHHHHHHHHHcCCCEEEEecc--------CCCcCCCcccCHHHHHHHhhc-CCC--ceEEE---------EecCC
Confidence 36788999999999999999999983 5554 444444556666662 122 45556 33444
Q ss_pred Ch-hhHHhhhcCCCeE-EeCCCCCcCccccc----cccCcccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEEEeccc
Q 047891 185 PP-WVLEEISKNPDLV-YTDKSGRRNPEYIS----LGCDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEIQVGLG 258 (551)
Q Consensus 185 P~-WV~~~~~~~PDi~-ytD~~G~rn~E~lS----lg~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI~VGlG 258 (551)
|. |+..-.+.-+|+. +-=+......+.|+ .|+--=-+|.--||++.|+.|+... +.|.=-
T Consensus 73 p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~v---------D~VllM----- 138 (220)
T COG0036 73 PDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDV---------DLVLLM----- 138 (220)
T ss_pred HHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhC---------CEEEEE-----
Confidence 44 6666566667743 33333333333333 2443334678899999998877532 222221
Q ss_pred CCCCcCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhh
Q 047891 259 PCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEAS 301 (551)
Q Consensus 259 P~GELRYPSyp~~~g~W~~PGiGEFQCYDky~~~sl~~~a~~~ 301 (551)
-..||-|. |-+-..++..+++.-+-.
T Consensus 139 ----------------sVnPGfgG-Q~Fi~~~l~Ki~~lr~~~ 164 (220)
T COG0036 139 ----------------SVNPGFGG-QKFIPEVLEKIRELRAMI 164 (220)
T ss_pred ----------------eECCCCcc-cccCHHHHHHHHHHHHHh
Confidence 33466555 777777777666655543
No 259
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=21.73 E-value=9e+02 Score=24.99 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHH------------------HHHHHHHHcCCeEEEEEee
Q 047891 108 KPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYA------------------ELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 108 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~------------------~l~~mv~~~GLKvqvvmsF 169 (551)
+++.+...++.+++.|+++|.+.+--- +++ ....|.-.+ +.+..+.++|.+. +..
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~---~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~---I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-VLG---RRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADG---IVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-CCC---CCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCE---EEE
Confidence 567788889999999999998866411 111 113342222 2233444555554 234
Q ss_pred eccCCCCCCCCccCCChhhHHhhhcCC-CeEEeCCCCCcC----ccccccccCcccccCCCChh--------HHHHHHHH
Q 047891 170 HQCGGNVGDSCTIPLPPWVLEEISKNP-DLVYTDKSGRRN----PEYISLGCDTIPLLRGRTPI--------QVYSDYMR 236 (551)
Q Consensus 170 HqCGGNVGD~~~IpLP~WV~~~~~~~P-Di~ytD~~G~rn----~E~lSlg~D~~pvl~GRTpi--------q~Y~dfm~ 236 (551)
|.+||-..| ..+|....+.++.+.-+ ++-..=.-|-++ .++|.+|+|-+=+ ||.-+ +--.++++
T Consensus 200 ~~~gG~~~~-~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i--g~~~l~~~~~~g~~~v~~~i~ 276 (299)
T cd02809 200 SNHGGRQLD-GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI--GRPFLYGLAAGGEAGVAHVLE 276 (299)
T ss_pred cCCCCCCCC-CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE--cHHHHHHHHhcCHHHHHHHHH
Confidence 455665443 23344445555544332 455555566666 7789999997644 33211 22346777
Q ss_pred HHHHHHhhhh
Q 047891 237 SFRERFRDYL 246 (551)
Q Consensus 237 SF~~~f~~~l 246 (551)
.+++++...+
T Consensus 277 ~l~~el~~~m 286 (299)
T cd02809 277 ILRDELERAM 286 (299)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 260
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=21.65 E-value=1.4e+02 Score=33.98 Aligned_cols=56 Identities=7% Similarity=-0.002 Sum_probs=36.6
Q ss_pred cchhHH---HHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCC
Q 047891 145 NWEGYA---ELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSG 205 (551)
Q Consensus 145 dWs~Y~---~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G 205 (551)
.|+-|+ +|.++++++|+++.+ ||.+||.||- ...|+| .+..+.++.|..+-...+|
T Consensus 216 ~w~l~~A~~~L~~~~~~~gv~i~~---fhGrGg~~~R-GGgpp~-~~~ail~q~~g~~r~TeQg 274 (494)
T PRK13655 216 VLSVKYALSRLYELEEELGVEIYP---ILGVGSLPFR-GHLSPE-NLENVLEEYPGVYTFTVQS 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---eccCCCCCCC-CCCChH-HHHHHHhCCCCCeEEEecc
Confidence 577665 567778999999855 8999999987 333322 2333445666655444444
No 261
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=21.63 E-value=2e+02 Score=30.72 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCCc----------cccchhHHHHHHHHHHcCCe-E
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGPL----------NYNWEGYAELIQMVQKHGLK-L 163 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~----------~YdWs~Y~~l~~mv~~~GLK-v 163 (551)
..+++.||++||+.+++.+ |.-.|. .-+|..-.+.++.++++|++ |
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 218 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKI 218 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 4677999999999999854 432122 33566667789999999997 5
No 262
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=21.55 E-value=1.8e+02 Score=31.69 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=44.3
Q ss_pred HHHHHHHHcCcceEEEeeeee-ccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCC
Q 047891 114 ASLMALKSAGVEGVMVDAWWG-LVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGG 174 (551)
Q Consensus 114 ~~L~~LK~~GVdGV~vdVWWG-iVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGG 174 (551)
.-|++.-++|+|.|.+.--|+ .+......+|...+-.++++-+++.+-. .||+-| |+|
T Consensus 193 ~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~pii~f--~~g 251 (352)
T COG0407 193 EYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-VPVIHF--CKG 251 (352)
T ss_pred HHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-CcEEEE--CCC
Confidence 445666789999999876664 4455568999999999999999987776 356655 877
No 263
>PLN02784 alpha-amylase
Probab=21.45 E-value=2.5e+02 Score=34.24 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccc-------------hhHHHHHHHHHHcCCeEEEEEee-eccCC
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNW-------------EGYAELIQMVQKHGLKLQVVMSF-HQCGG 174 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-------------s~Y~~l~~mv~~~GLKvqvvmsF-HqCGG 174 (551)
++.|...|..|+++||++|-+.-=. +...+.-|+- ..+++|++.++++|++|.+=+-+ |-||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~~---~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPPT---ESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCC---CCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 7899999999999999999887632 3223333432 35889999999999999554444 66654
No 264
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.43 E-value=2.6e+02 Score=28.29 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=51.9
Q ss_pred ccCHHHHHHHHHHHHHc--CcceEEEeeeeeccccCCCccc--c-----chhHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q 047891 106 LNKPRAMNASLMALKSA--GVEGVMVDAWWGLVEKDGPLNY--N-----WEGYAELIQMVQKHGLKLQVVMSFHQCGGNV 176 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~--GVdGV~vdVWWGiVE~~~p~~Y--d-----Ws~Y~~l~~mv~~~GLKvqvvmsFHqCGGNV 176 (551)
..+.+.+..-.+.+++. -+|.|.+|.+|..- -+.+ + |.--+++++-+++.|+|+ ++..|
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~--~~~~~------ 87 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----YGDFTFDWDAGKFPNPKSMIDELHDNGVKL--VLWID------ 87 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcccccC----CceeeeecChhhCCCHHHHHHHHHHCCCEE--EEEeC------
Confidence 35678888889999985 56899999999742 2333 3 455689999999999999 55554
Q ss_pred CCCCccCCChhhHHhhh
Q 047891 177 GDSCTIPLPPWVLEEIS 193 (551)
Q Consensus 177 GD~~~IpLP~WV~~~~~ 193 (551)
+.| -.|..+..+
T Consensus 88 ---P~v--~~w~~~~~~ 99 (265)
T cd06589 88 ---PYI--REWWAEVVK 99 (265)
T ss_pred ---hhH--HHHHHHHHH
Confidence 223 778887654
No 265
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=21.35 E-value=1.7e+02 Score=34.41 Aligned_cols=64 Identities=16% Similarity=0.364 Sum_probs=40.8
Q ss_pred HHHHH--HHHHHHHcCcceEEEe-e----------------eeecccc---CCCccc----cchhHHHHHHHHHHcCCeE
Q 047891 110 RAMNA--SLMALKSAGVEGVMVD-A----------------WWGLVEK---DGPLNY----NWEGYAELIQMVQKHGLKL 163 (551)
Q Consensus 110 ~~~~~--~L~~LK~~GVdGV~vd-V----------------WWGiVE~---~~p~~Y----dWs~Y~~l~~mv~~~GLKv 163 (551)
.++.. .|..||++||+.|.+- | .||.-=. .-...| .-..+++|++.+++.||+|
T Consensus 182 ~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~V 261 (688)
T TIGR02100 182 AGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEV 261 (688)
T ss_pred HHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEE
Confidence 45544 4999999999999752 2 2542100 001122 3456999999999999999
Q ss_pred EEEEee-eccC
Q 047891 164 QVVMSF-HQCG 173 (551)
Q Consensus 164 qvvmsF-HqCG 173 (551)
..=+-| |-+.
T Consensus 262 IlDvV~NHt~~ 272 (688)
T TIGR02100 262 ILDVVYNHTAE 272 (688)
T ss_pred EEEECcCCccC
Confidence 555555 5443
No 266
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.25 E-value=2.5e+02 Score=30.75 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCC-------ccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGP-------LNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
...|+.||++|+..|.+.+ |...+ ...+.+.+.+.++.++++|+.+.+-+=+
T Consensus 287 ~e~l~~l~~aG~~~v~iGi-----ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~Ii 345 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY-----ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFIL 345 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC-----CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 3568899999999888764 43222 3467778999999999999988654444
No 267
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=21.24 E-value=2.4e+02 Score=25.94 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCce
Q 047891 401 RDGYIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVEL 456 (551)
Q Consensus 401 rdGY~~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~ 456 (551)
.-|+..+.+.+++..+.|.|-+- .++|.++...+...|++++|++
T Consensus 32 v~G~~~v~kaikkgkakLVilA~-----------D~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 32 KKGTNETTKAVERGIAKLVVIAE-----------DVDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred eEcHHHHHHHHHcCCccEEEEeC-----------CCChHHHHHHHHHHHHHcCCCE
Confidence 36799999999999999999864 4667888999999999999995
No 268
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=21.24 E-value=6.1e+02 Score=25.51 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=53.0
Q ss_pred EeecceecCCC-----cccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEe
Q 047891 94 MLPLDTLSNSG-----HLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMS 168 (551)
Q Consensus 94 MlPLd~V~~~~-----~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvms 168 (551)
.+|+.+....+ ...+...+.+.|+...+.|++-|.+- ||.-.+ ......-+.++++++.+.+.|.=| |.+
T Consensus 68 i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S--~g~~~~-~~~~~~~~~l~~ai~~A~~~Gilv--vaa 142 (247)
T cd07491 68 LYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMS--WTIKKP-EDNDNDINELENAIKEALDRGILL--FCS 142 (247)
T ss_pred EEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEee--eecccc-cccccchHHHHHHHHHHHhCCeEE--EEe
Confidence 34555544332 13356789999999999999988877 675332 111223567788888888877444 444
Q ss_pred eeccCCCCCCCC--ccCCChh
Q 047891 169 FHQCGGNVGDSC--TIPLPPW 187 (551)
Q Consensus 169 FHqCGGNVGD~~--~IpLP~W 187 (551)
- ||-|.+. .+|.|.+
T Consensus 143 A----GN~g~~~~~~~~~pa~ 159 (247)
T cd07491 143 A----SDQGAFTGDTYPPPAA 159 (247)
T ss_pred c----CCCCCcCCCcccCccc
Confidence 4 6666544 4566654
No 269
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=21.23 E-value=2.3e+02 Score=29.79 Aligned_cols=65 Identities=20% Similarity=0.467 Sum_probs=45.1
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc---ch---hHHHHHHHHHHcCCe-----EEEEEeee
Q 047891 103 SGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WE---GYAELIQMVQKHGLK-----LQVVMSFH 170 (551)
Q Consensus 103 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws---~Y~~l~~mv~~~GLK-----vqvvmsFH 170 (551)
++++.-....+.-.++|+ .|+--|++|||=| +...|-.|. +. ..+++++.|+++..+ |+..|--|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~S~yPvIlsLE~H 98 (258)
T cd08629 23 EDQLTGPSSTEAYIRALC-KGCRCLELDCWDG--PNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENH 98 (258)
T ss_pred CCccCCccCHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCCCccCcCHHHHHHHHHHHhccCCCCCEEEEeecc
Confidence 456776777777777777 8999999999977 222344332 22 578999999998776 44444445
No 270
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=21.17 E-value=1.7e+02 Score=31.34 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCcceEEEee---eeecccc-----CCCccccchhHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 047891 110 RAMNASLMALKSAGVEGVMVDA---WWGLVEK-----DGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGD 178 (551)
Q Consensus 110 ~~~~~~L~~LK~~GVdGV~vdV---WWGiVE~-----~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD 178 (551)
+.+...|++|+..|+|||-+|+ ||=..+. .++-+=.=..|.++.+.+|.+.=-+.+| -|.|+++=|
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi---~qng~~l~d 199 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVI---PQNGAELFD 199 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEE---ecccHhhcC
Confidence 5678999999999999998876 3322221 1223334455889999999876545554 355655433
No 271
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=21.10 E-value=2.2e+02 Score=29.73 Aligned_cols=83 Identities=17% Similarity=0.356 Sum_probs=56.4
Q ss_pred hhhhccCCCCCCCCCCCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc---cch-
Q 047891 72 EMVHELASPPHNHHRNKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY---NWE- 147 (551)
Q Consensus 72 ~~~~~~~~~~~~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs- 147 (551)
-+.|.+...+|+. |. .++++.-....++-.++|+ .|+--|++|||=|.-...+|-.| .+.
T Consensus 7 Pls~YfI~SSHNT---YL------------~g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~~~~~eP~v~Hg~t~t~ 70 (258)
T cd08625 7 PLSHYFINSSHNT---YL------------TAGQLTGLSSVEMYRQVLL-TGCRCIELDCWKGRPPEEEPFITHGFTMTT 70 (258)
T ss_pred chhhheeecCccc---cc------------cCCccCCccCHHHHHHHHH-cCCCEEEEEecCCCCCCCCCEEeeCCcccc
Confidence 4667777665554 21 2467887888888888885 99999999999664211234433 232
Q ss_pred --hHHHHHHHHHHcCCe-----EEEEEeee
Q 047891 148 --GYAELIQMVQKHGLK-----LQVVMSFH 170 (551)
Q Consensus 148 --~Y~~l~~mv~~~GLK-----vqvvmsFH 170 (551)
-.+++++.|+++..+ |+..|--|
T Consensus 71 ~i~f~dv~~~I~~~aF~~s~yPvIlslE~H 100 (258)
T cd08625 71 EIPFKDVIEAIAESAFKTSPYPVILSFENH 100 (258)
T ss_pred CcCHHHHHHHHHHHhccCCCCCEEEEehhc
Confidence 378999999997776 55555556
No 272
>PRK14705 glycogen branching enzyme; Provisional
Probab=21.10 E-value=1.8e+02 Score=36.53 Aligned_cols=54 Identities=17% Similarity=0.373 Sum_probs=37.6
Q ss_pred HHHHHHH-HHHHHHcCcceEEEeeeeeccccCCCccccch-----------------hHHHHHHHHHHcCCeEEEEEee
Q 047891 109 PRAMNAS-LMALKSAGVEGVMVDAWWGLVEKDGPLNYNWE-----------------GYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 109 ~~~~~~~-L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
-+.+... |..||++||+.|.+== +.|- |..++|- .++++++.+++.||+| ||-+
T Consensus 764 ~~~l~~~lldYlk~LGvt~IeLmP---v~e~--p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~V--ILD~ 835 (1224)
T PRK14705 764 YRELAKELVDYVKWLGFTHVEFMP---VAEH--PFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGV--LLDW 835 (1224)
T ss_pred hHHHHHHHHHHHHHhCCCEEEECc---cccC--CCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 3555555 6999999999997531 2332 3334453 3899999999999999 5543
No 273
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=20.97 E-value=2.3e+02 Score=29.68 Aligned_cols=57 Identities=23% Similarity=0.496 Sum_probs=41.4
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc---cchh---HHHHHHHHHHcCCe
Q 047891 103 SGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY---NWEG---YAELIQMVQKHGLK 162 (551)
Q Consensus 103 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs~---Y~~l~~mv~~~GLK 162 (551)
++++.-....+.-.++|+ .|+--|++|||=| +...|-.| .+.. .+++++.|+++..+
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~Ik~~AF~ 85 (258)
T cd08631 23 EDQLRGQSSVEGYIRALK-RGCRCVEVDVWDG--PNGEPIVYHGHTFTSKILFKDVVAAVAQYAFQ 85 (258)
T ss_pred CCcccCccCHHHHHHHHH-cCCcEEEEEeecC--CCCCcEEeeCCcccCCcCHHHHHHHHHHHhcc
Confidence 467777777887778887 5999999999976 22223333 2222 89999999999876
No 274
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=20.91 E-value=9.6e+02 Score=25.26 Aligned_cols=88 Identities=11% Similarity=0.165 Sum_probs=56.1
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeccccCCCccccch-----hHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 047891 106 LNKPRAMNASLMALKSAG--VEGVMVDAWWGLVEKDGPLNYNWE-----GYAELIQMVQKHGLKLQVVMSFHQCGGNVGD 178 (551)
Q Consensus 106 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD 178 (551)
..+.+.+..-++.+++.| +|.|.+|.=|- .+.+.|+|. --+++++-+++.|+|| ++..|-+-. .
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~--~~~~~P~v~---~ 90 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKRYFTWDKKKFPDPEKMQEKLASKGRKL--VTIVDPHIK---R 90 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCCceEeCcccCCCHHHHHHHHHHCCCEE--EEEecCcee---c
Confidence 356778888888888866 58888887442 134456554 3567889999999999 555552211 0
Q ss_pred CCccCCChhhHHhhhcCCCeEEeCCCCCc
Q 047891 179 SCTIPLPPWVLEEISKNPDLVYTDKSGRR 207 (551)
Q Consensus 179 ~~~IpLP~WV~~~~~~~PDi~ytD~~G~r 207 (551)
+.. .|. -+++.++ +.+.++.+|..
T Consensus 91 ~~~--~~~--y~e~~~~-g~~vk~~~g~~ 114 (339)
T cd06603 91 DDG--YYV--YKEAKDK-GYLVKNSDGGD 114 (339)
T ss_pred CCC--CHH--HHHHHHC-CeEEECCCCCE
Confidence 011 222 3455555 89999998853
No 275
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=20.81 E-value=1e+03 Score=25.27 Aligned_cols=129 Identities=19% Similarity=0.316 Sum_probs=77.7
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEee----eeecc--------cc--------CCCccccchhHHHHHHHHHHcCCeEE
Q 047891 105 HLNKPRAMNASLMALKSAGVEGVMVDA----WWGLV--------EK--------DGPLNYNWEGYAELIQMVQKHGLKLQ 164 (551)
Q Consensus 105 ~~~~~~~~~~~L~~LK~~GVdGV~vdV----WWGiV--------E~--------~~p~~YdWs~Y~~l~~mv~~~GLKvq 164 (551)
.+-..+.|++.+..|...+.....+-. -|-+- +. ...+.|.=+-+++|++.|++.|+.|+
T Consensus 13 ~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 13 HFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 356789999999999999988776543 24321 11 12356788889999999999999997
Q ss_pred EEEee-------------eccCCC---------CC-CCCccCCCh---hhHHhhhcCCCeEEeCCCCCcCccccccccCc
Q 047891 165 VVMSF-------------HQCGGN---------VG-DSCTIPLPP---WVLEEISKNPDLVYTDKSGRRNPEYISLGCDT 218 (551)
Q Consensus 165 vvmsF-------------HqCGGN---------VG-D~~~IpLP~---WV~~~~~~~PDi~ytD~~G~rn~E~lSlg~D~ 218 (551)
|-+-+ ..|.+. ++ +..++.-|. .|.+..+.-=++| ...++-+|.||
T Consensus 93 PEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f--------~~~~iHiGgDE 164 (329)
T cd06568 93 PEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALT--------PGPYIHIGGDE 164 (329)
T ss_pred EecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhC--------CCCeEEEeccc
Confidence 75433 112110 00 011222221 1111111110121 25799999999
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHhhh
Q 047891 219 IPLLRGRTPIQVYSDYMRSFRERFRDY 245 (551)
Q Consensus 219 ~pvl~GRTpiq~Y~dfm~SF~~~f~~~ 245 (551)
.+. +..+.|..|+....+.+.+.
T Consensus 165 ~~~----~~~~~~~~f~~~~~~~v~~~ 187 (329)
T cd06568 165 AHS----TPHDDYAYFVNRVRAIVAKY 187 (329)
T ss_pred CCC----CchHHHHHHHHHHHHHHHHC
Confidence 984 34678888888877776653
No 276
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=20.77 E-value=2.4e+02 Score=29.07 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=44.7
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc---ch---hHHHHHHHHHHcCCe-----EEEEEeeec
Q 047891 103 SGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---WE---GYAELIQMVQKHGLK-----LQVVMSFHQ 171 (551)
Q Consensus 103 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws---~Y~~l~~mv~~~GLK-----vqvvmsFHq 171 (551)
++++.-....+.-.++| ..|+--|++|||=| +...|-.|. .. -.+++++.|++++.+ |...|--|.
T Consensus 23 g~Ql~~~ss~e~Y~~aL-~~GcRcvElD~wdg--~~~ePvV~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlSlE~Hc 99 (227)
T cd08594 23 GDQLLSQSRVDMYARVL-QAGCRCVEVDCWDG--PDGEPVVHHGYTLTSKILFRDVIETINKYAFIKNEYPVILSIENHC 99 (227)
T ss_pred CCcccCcccHHHHHHHH-HhCCcEEEEEeecC--CCCCcEEeeCCCcccCcCHHHHHHHHHHhhccCCCCCEEEEecccC
Confidence 45676666677777777 78999999999976 222344332 11 368999999998776 444455563
No 277
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.57 E-value=2.2e+02 Score=30.05 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeccccCCC-------ccccchhHHHHHHHHHHcCCe-EEEEEee
Q 047891 113 NASLMALKSAGVEGVMVDAWWGLVEKDGP-------LNYNWEGYAELIQMVQKHGLK-LQVVMSF 169 (551)
Q Consensus 113 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLK-vqvvmsF 169 (551)
+..|+.||++||+.|.+. ||...| ...++.-+.+.+++++++|++ |.+-|-|
T Consensus 100 ~e~l~~l~~~Gv~risiG-----vqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-----VQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-----cccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
No 278
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.46 E-value=1.9e+02 Score=27.85 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=41.6
Q ss_pred CCcceEEEeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccc------cchhHHHHHHHHHHc
Q 047891 87 NKVPVFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNY------NWEGYAELIQMVQKH 159 (551)
Q Consensus 87 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y------dWs~Y~~l~~mv~~~ 159 (551)
...|+.+-+-- ++++.+.+.-+.++++|+|+|.+.+---.... ..+.| ++.-..++++.+++.
T Consensus 53 ~~~p~~~qi~g---------~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~-~~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 53 EERPLIVQLGG---------SDPETLAEAAKIVEELGADGIDLNMGCPSPKV-TKGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred cCCCEEEEEcC---------CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHH-hCCCeeehhcCCHHHHHHHHHHHHHh
Confidence 46676654431 46899999999999999999999875321111 11222 666677777777654
No 279
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=20.40 E-value=2.4e+02 Score=27.47 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 109 PRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 109 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.+....+.+..-++|+|.|.+-+-||.+-. +.-++..+.-.++.+.+. |+-+.+|+-.
T Consensus 68 ~~~k~~eve~A~~~GAdevdvv~~~g~~~~-~~~~~~~~ei~~v~~~~~--g~~lkvI~e~ 125 (203)
T cd00959 68 TEVKVAEAREAIADGADEIDMVINIGALKS-GDYEAVYEEIAAVVEACG--GAPLKVILET 125 (203)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecHHHHhC-CCHHHHHHHHHHHHHhcC--CCeEEEEEec
Confidence 466666677788899999999999998754 322333333333333333 5666667776
No 280
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=20.38 E-value=2.5e+02 Score=29.38 Aligned_cols=57 Identities=28% Similarity=0.506 Sum_probs=40.9
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeccccCCCcccc---c---hhHHHHHHHHHHcCCe
Q 047891 103 SGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYN---W---EGYAELIQMVQKHGLK 162 (551)
Q Consensus 103 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---W---s~Y~~l~~mv~~~GLK 162 (551)
++++.-....+.-.++|+ .|+--|++|||=| +...|-.|. + =..+++++.|++++..
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg--~~~eP~v~HG~t~t~~i~f~~v~~~I~~~aF~ 85 (257)
T cd08593 23 EDQLKGPSSTEAYIRALK-KGCRCVELDCWDG--PDGEPIIYHGHTLTSKILFKDVIQAIREYAFK 85 (257)
T ss_pred CCcccCCccHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCccccCcCHHHHHHHHHHHhcc
Confidence 456776777777777777 8999999999977 222344333 1 2468999999998765
No 281
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.24 E-value=3.9e+02 Score=28.13 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=48.3
Q ss_pred EEEeeccee--cCCCcccCHHHHHHHHHHHHHcCcceEEEe---ee-eecccc---CCCcccc---chhHHHHHHHHHHc
Q 047891 92 FVMLPLDTL--SNSGHLNKPRAMNASLMALKSAGVEGVMVD---AW-WGLVEK---DGPLNYN---WEGYAELIQMVQKH 159 (551)
Q Consensus 92 ~VMlPLd~V--~~~~~~~~~~~~~~~L~~LK~~GVdGV~vd---VW-WGiVE~---~~p~~Yd---Ws~Y~~l~~mv~~~ 159 (551)
+||.|+.+- +.+|..+ +.+.+-..+....|+--|.+. |- -|...+ ..++-|+ -.++++|++.|+++
T Consensus 17 i~~~p~~~~~~~~~g~~~--~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~ 94 (338)
T cd04733 17 LAKAAMSERLADGRGLPT--PELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAFREWAAAAKAN 94 (338)
T ss_pred ceecccccccccCCCCCC--HHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHHHHHHHHHHHHhc
Confidence 578888643 2345443 555566666666677666555 21 233332 2233333 67999999999999
Q ss_pred CCeEEEEEeeeccCC
Q 047891 160 GLKLQVVMSFHQCGG 174 (551)
Q Consensus 160 GLKvqvvmsFHqCGG 174 (551)
|=|+ ++-.+.+|.
T Consensus 95 G~~~--~~Ql~h~G~ 107 (338)
T cd04733 95 GALI--WAQLNHPGR 107 (338)
T ss_pred CCEE--EEEccCCCc
Confidence 9998 665444654
No 282
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=20.23 E-value=4.1e+02 Score=27.05 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=36.4
Q ss_pred CCCcccC-HHHHHHHHHHHH-HcCcceEEEeeeeeccccCCCccccchhHHHHHHHHHHcCCeEEEEEeeec
Q 047891 102 NSGHLNK-PRAMNASLMALK-SAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELIQMVQKHGLKLQVVMSFHQ 171 (551)
Q Consensus 102 ~~~~~~~-~~~~~~~L~~LK-~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsFHq 171 (551)
.+|.... .+...+-|+.+- ..+||.|-|..... .+-...+++++.+++.|.|| |+|+|-
T Consensus 74 EGG~~~~~~~~~~~ll~~~~~~~~~d~vDiE~~~~---------~~~~~~~~l~~~~~~~~~~v--I~S~H~ 134 (238)
T PRK13575 74 QGGYGQFTNDLYLNLLSDLANINGIDMIDIEWQAD---------IDIEKHQRLITHLQQYNKEV--VISHHN 134 (238)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEcccC---------CChHHHHHHHHHHHHcCCEE--EEecCC
Confidence 4454332 233333344443 45689988875431 12235778888999999877 999994
No 283
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=20.22 E-value=1.5e+02 Score=32.33 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeecccc----CCCccccchhHHHHHHHHHHcCCeEEEEEee
Q 047891 111 AMNASLMALKSAGVEGVMVDAWWGLVEK----DGPLNYNWEGYAELIQMVQKHGLKLQVVMSF 169 (551)
Q Consensus 111 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKvqvvmsF 169 (551)
.++.-|++||++|.+.++..-===++|. ..|.+-++.+..+..+.|.+.|++-...|-+
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 3556699999999999987544334443 5599999999999999999999999888877
No 284
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=20.17 E-value=4.3e+02 Score=29.35 Aligned_cols=82 Identities=16% Similarity=0.415 Sum_probs=43.4
Q ss_pred CCCccccc---hhHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCccCCChhhHHhhhcCCCeEEeCCCCCcCccccccc
Q 047891 139 DGPLNYNW---EGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLG 215 (551)
Q Consensus 139 ~~p~~YdW---s~Y~~l~~mv~~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~~~~~~~PDi~ytD~~G~rn~E~lSlg 215 (551)
..++.||| .+-+-+++.|++.|.+. ++.| . -++|.|...-|..- .+.....+|.
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~--f~aF----------S-NSPP~~MT~NG~~~--------g~~~~~~NLk-- 149 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNI--FEAF----------S-NSPPWWMTKNGSAS--------GGDDGSDNLK-- 149 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT-----EEEE------------SSS-GGGSSSSSSB---------S-SSS-SS---
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCe--EEEe----------e-cCCCHHHhcCCCCC--------CCCccccccC--
Confidence 36899999 56777899999999998 7777 2 25888886433211 1111134444
Q ss_pred cCcccccCCCChhHHHHHHHHHHHHHHhhhhcCceeEE
Q 047891 216 CDTIPLLRGRTPIQVYSDYMRSFRERFRDYLGDVVQEI 253 (551)
Q Consensus 216 ~D~~pvl~GRTpiq~Y~dfm~SF~~~f~~~l~~~I~eI 253 (551)
+-- .+.|.+||....++|.. .|=.|+-|
T Consensus 150 --------~d~-y~~FA~YLa~Vv~~~~~-~GI~f~~I 177 (384)
T PF14587_consen 150 --------PDN-YDAFADYLADVVKHYKK-WGINFDYI 177 (384)
T ss_dssp --------TT--HHHHHHHHHHHHHHHHC-TT--EEEE
T ss_pred --------hhH-HHHHHHHHHHHHHHHHh-cCCcccee
Confidence 111 47777778888888743 34355555
No 285
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=20.02 E-value=1.9e+02 Score=29.39 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=48.4
Q ss_pred hHHHHHHHHHcCcEEEEEecccCCCCCCCCCCCChHHHHHHHHHHHHHcCCceeeccccc---ccChhHHHH
Q 047891 404 YIPIARMLAKHGVILNFTCMEMRDTEQPGNANCSPEGLVRQVKMATRTAGVELAGENALE---RYDADAYAQ 472 (551)
Q Consensus 404 Y~~Ia~mf~kh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~---~~d~~a~~q 472 (551)
...+++.|-.+|+....+|+.-..-...---..-=++++..+.+...+.||.++|||.-- .+|.--|.+
T Consensus 123 ~~~ll~e~i~~G~~aiIv~v~a~gL~~~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGEyhT~V~d~PlF~~ 194 (223)
T TIGR00290 123 PEKLMEEFVEEKFEARIIAVAAEGLDESWLGRRIDRKMIDELKKLNEKYGIHPAGEGGEFETLVLDAPIFKK 194 (223)
T ss_pred HHHHHHHHHHcCCeEEEEEEecCCCChHHcCCcccHHHHHHHHHHHhccCCCccCCCceEEEEEecCccccc
Confidence 467888888999999999986542221101122235788888888889999999999865 456555554
Done!