BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047894
         (1087 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 37.7 bits (86), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 613 IKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKLLKEMP---CGMK 669
           I+SLP S   L NL+ L +RN S L  L P + +L  L  LD+RG   L+  P    G  
Sbjct: 195 IRSLPASIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 670 ELKKL 674
            LK+L
Sbjct: 254 PLKRL 258



 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 626 LEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKLLKEMPCGMKEL 671
           L+ LIL++CS L+ LP  +  L  L  LD+RG   L  +P  + +L
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300



 Score = 31.2 bits (69), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 54/216 (25%)

Query: 905  VPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLT 964
            VPL  +P       D+   L++L+   I ++  L  LP+   +             E+LT
Sbjct: 91   VPLPQFP-------DQAFRLSHLQHXTI-DAAGLXELPDTXQQ---------FAGLETLT 133

Query: 965  FIAR---RRLPAS------LKRLEIENCEKLQRLFDDEGDAXXXXXXXXXXXVMLQLLRI 1015
             +AR   R LPAS      L+ L I  C +L  L   E  A           V LQ LR+
Sbjct: 134  -LARNPLRALPASIASLNRLRELSIRACPELTEL--PEPLASTDASGEHQGLVNLQSLRL 190

Query: 1016 ENCRKLESIPDGLPNLKCLQSICIRKCP-----------------------SLVSFPE-R 1051
            E    + S+P  + NL+ L+S+ IR  P                       +L ++P   
Sbjct: 191  E-WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 1052 GLPNTISAVYICECDKLEAPPNDMHKLNSLQSLSIK 1087
            G    +  + + +C  L   P D+H+L  L+ L ++
Sbjct: 250  GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285


>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
          Length = 591

 Score = 31.2 bits (69), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 10/49 (20%)

Query: 274 RFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA-STMGP 321
           R LL+LDDVW+     WV       A +   ++++TTR+ +V  S MGP
Sbjct: 237 RSLLILDDVWDS----WV-----LKAFDSQCQILLTTRDKSVTDSVMGP 276


>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
          Length = 1263

 Score = 30.8 bits (68), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 10/49 (20%)

Query: 274 RFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA-STMGP 321
           R LL+LDDVW+     WV       A +   ++++TTR+ +V  S MGP
Sbjct: 243 RSLLILDDVWDS----WV-----LKAFDSQCQILLTTRDKSVTDSVMGP 282


>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
          Intracellular Mla Immune Receptors Defines A Minimal
          Functional Module For Triggering Cell Death
          Length = 115

 Score = 30.0 bits (66), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 53 DEAVKMWLDDLQDLAYDAEDILDEFATQA 81
          D   K+W D++++L+Y  ED++D+F  Q 
Sbjct: 54 DSQDKLWADEVRELSYVIEDVVDKFLVQV 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,496,633
Number of Sequences: 62578
Number of extensions: 1070249
Number of successful extensions: 2373
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2353
Number of HSP's gapped (non-prelim): 28
length of query: 1087
length of database: 14,973,337
effective HSP length: 109
effective length of query: 978
effective length of database: 8,152,335
effective search space: 7972983630
effective search space used: 7972983630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)