Query 047894
Match_columns 1087
No_of_seqs 530 out of 4262
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1E-83 2.2E-88 767.4 45.9 629 25-682 26-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.2E-62 2E-66 616.0 53.7 701 165-1052 183-913 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.2E-42 1.3E-46 373.7 17.2 275 171-453 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 6.7E-33 1.5E-37 354.8 24.8 498 522-1073 70-589 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.2E-31 2.6E-36 343.3 23.1 475 542-1069 114-608 (968)
6 KOG4194 Membrane glycoprotein 99.9 4.1E-24 8.9E-29 227.8 1.8 102 982-1085 339-445 (873)
7 KOG0472 Leucine-rich repeat pr 99.8 8.4E-25 1.8E-29 223.0 -15.4 265 754-1043 246-539 (565)
8 PLN03210 Resistant to P. syrin 99.8 1.6E-19 3.5E-24 230.6 23.0 349 571-1072 551-910 (1153)
9 KOG0618 Serine/threonine phosp 99.8 3E-23 6.5E-28 233.7 -9.7 99 577-677 44-142 (1081)
10 KOG4194 Membrane glycoprotein 99.8 1.5E-21 3.3E-26 208.3 1.8 363 578-1041 78-448 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 9.4E-24 2E-28 215.4 -15.5 423 573-1087 63-536 (565)
12 KOG0444 Cytoskeletal regulator 99.8 3.8E-22 8.3E-27 213.8 -7.0 363 578-1050 7-380 (1255)
13 KOG0444 Cytoskeletal regulator 99.8 2.6E-21 5.5E-26 207.6 -5.5 334 574-1036 51-390 (1255)
14 KOG0618 Serine/threonine phosp 99.8 1.3E-20 2.9E-25 212.6 -6.3 388 577-1050 20-424 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 1.5E-13 3.3E-18 162.1 14.7 78 578-665 201-278 (788)
16 PRK04841 transcriptional regul 99.4 9.7E-12 2.1E-16 159.2 25.1 293 165-502 13-332 (903)
17 PRK15387 E3 ubiquitin-protein 99.4 1.6E-12 3.5E-17 153.5 15.6 237 761-1070 223-460 (788)
18 KOG4658 Apoptotic ATPase [Sign 99.3 7.2E-13 1.6E-17 160.3 6.9 107 576-683 543-653 (889)
19 KOG4237 Extracellular matrix p 99.3 1.6E-14 3.5E-19 148.5 -6.7 113 567-680 80-196 (498)
20 PRK15370 E3 ubiquitin-protein 99.3 6.5E-12 1.4E-16 149.7 12.8 82 578-667 178-259 (754)
21 PRK00411 cdc6 cell division co 99.3 4.9E-10 1.1E-14 128.2 25.7 301 164-481 28-359 (394)
22 TIGR03015 pepcterm_ATPase puta 99.2 1.2E-09 2.5E-14 118.0 21.6 181 194-380 44-242 (269)
23 KOG0617 Ras suppressor protein 99.2 3.2E-13 6.9E-18 122.5 -5.7 124 573-697 51-175 (264)
24 PRK15370 E3 ubiquitin-protein 99.2 4.2E-11 9.2E-16 142.9 9.1 241 763-1067 181-427 (754)
25 TIGR02928 orc1/cdc6 family rep 99.1 1.4E-08 3.1E-13 114.8 27.4 302 165-481 14-351 (365)
26 KOG0617 Ras suppressor protein 99.1 1.2E-12 2.7E-17 118.8 -4.8 102 575-677 30-132 (264)
27 TIGR00635 ruvB Holliday juncti 99.0 8.9E-09 1.9E-13 113.1 18.9 276 166-481 4-290 (305)
28 PRK00080 ruvB Holliday junctio 99.0 4.8E-09 1E-13 115.7 16.8 277 165-481 24-311 (328)
29 COG2909 MalT ATP-dependent tra 99.0 2.1E-08 4.6E-13 115.0 21.9 297 165-504 18-340 (894)
30 PF01637 Arch_ATPase: Archaeal 99.0 1.4E-09 3.1E-14 114.9 11.0 195 168-375 1-233 (234)
31 PF05729 NACHT: NACHT domain 98.9 5E-09 1.1E-13 103.9 10.6 143 194-343 1-163 (166)
32 PTZ00112 origin recognition co 98.8 2.4E-07 5.1E-12 107.3 19.6 250 165-425 754-1027(1164)
33 COG3899 Predicted ATPase [Gene 98.8 1.8E-07 3.9E-12 114.6 19.4 311 168-500 2-384 (849)
34 KOG4237 Extracellular matrix p 98.7 2E-09 4.3E-14 111.7 -1.1 283 759-1065 66-396 (498)
35 cd00116 LRR_RI Leucine-rich re 98.6 3.4E-09 7.4E-14 118.0 -1.4 86 574-659 19-119 (319)
36 PTZ00202 tuzin; Provisional 98.6 4.8E-06 1E-10 89.6 22.1 172 159-343 255-434 (550)
37 PRK06893 DNA replication initi 98.6 4.9E-07 1.1E-11 93.8 14.1 154 194-379 40-206 (229)
38 PRK13342 recombination factor 98.6 7.3E-07 1.6E-11 101.5 14.4 179 166-378 12-198 (413)
39 cd00116 LRR_RI Leucine-rich re 98.5 8.8E-09 1.9E-13 114.6 -1.5 89 571-659 44-148 (319)
40 KOG4341 F-box protein containi 98.5 3.3E-09 7.2E-14 111.1 -5.1 281 787-1083 140-456 (483)
41 COG2256 MGS1 ATPase related to 98.5 1E-06 2.2E-11 93.0 13.1 156 191-373 46-209 (436)
42 PRK04195 replication factor C 98.5 1.6E-05 3.4E-10 92.6 23.4 245 166-453 14-271 (482)
43 PF13401 AAA_22: AAA domain; P 98.5 3.8E-07 8.2E-12 86.1 7.5 118 193-312 4-125 (131)
44 KOG0532 Leucine-rich repeat (L 98.4 7.5E-09 1.6E-13 112.4 -5.0 104 574-680 94-197 (722)
45 PF13191 AAA_16: AAA ATPase do 98.4 3.2E-07 7E-12 92.7 7.0 51 167-220 1-51 (185)
46 PRK12402 replication factor C 98.4 7.6E-06 1.6E-10 91.6 18.2 196 166-375 15-225 (337)
47 PRK15386 type III secretion pr 98.4 7.3E-07 1.6E-11 96.9 9.4 134 889-1065 51-187 (426)
48 PRK05564 DNA polymerase III su 98.4 7.8E-06 1.7E-10 89.6 17.7 180 167-376 5-190 (313)
49 PF14580 LRR_9: Leucine-rich r 98.4 8.8E-08 1.9E-12 92.8 2.0 81 577-659 41-124 (175)
50 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.9E-06 4.2E-11 90.1 12.2 171 171-379 22-204 (226)
51 PF05496 RuvB_N: Holliday junc 98.4 5.5E-06 1.2E-10 81.8 14.2 183 165-381 23-226 (233)
52 COG1474 CDC6 Cdc6-related prot 98.4 1.2E-05 2.7E-10 88.4 18.4 175 166-344 17-204 (366)
53 PRK07003 DNA polymerase III su 98.4 1.5E-05 3.2E-10 92.7 19.4 180 166-375 16-220 (830)
54 PF14580 LRR_9: Leucine-rich r 98.4 2.5E-07 5.3E-12 89.7 4.4 123 575-701 16-146 (175)
55 COG3903 Predicted ATPase [Gene 98.4 6E-07 1.3E-11 95.6 7.5 292 192-502 13-314 (414)
56 PRK14963 DNA polymerase III su 98.4 2.1E-06 4.6E-11 98.6 11.6 196 166-374 14-215 (504)
57 PRK14961 DNA polymerase III su 98.4 1.5E-05 3.2E-10 89.0 18.1 180 166-376 16-220 (363)
58 cd00009 AAA The AAA+ (ATPases 98.3 4.8E-06 1E-10 80.7 11.6 125 169-314 1-131 (151)
59 KOG3207 Beta-tubulin folding c 98.3 7.9E-08 1.7E-12 101.6 -1.3 84 866-961 195-282 (505)
60 PRK15386 type III secretion pr 98.3 4.5E-06 9.6E-11 90.9 11.8 161 867-1067 51-212 (426)
61 COG4886 Leucine-rich repeat (L 98.3 5.5E-07 1.2E-11 103.2 5.1 104 574-679 112-216 (394)
62 TIGR02903 spore_lon_C ATP-depe 98.3 0.00013 2.8E-09 86.7 24.8 203 166-379 154-398 (615)
63 PF13173 AAA_14: AAA domain 98.3 2.3E-06 5E-11 79.9 8.1 119 194-335 3-127 (128)
64 PRK14949 DNA polymerase III su 98.3 1.6E-05 3.4E-10 94.4 16.7 184 166-376 16-220 (944)
65 PRK06645 DNA polymerase III su 98.2 2.7E-05 5.9E-10 89.1 17.3 196 166-375 21-228 (507)
66 KOG3207 Beta-tubulin folding c 98.2 1.9E-07 4.1E-12 98.7 -0.2 183 865-1067 118-313 (505)
67 PRK12323 DNA polymerase III su 98.2 1.8E-05 3.9E-10 90.7 15.4 181 166-376 16-225 (700)
68 PRK14960 DNA polymerase III su 98.2 2.6E-05 5.6E-10 89.8 16.6 194 166-376 15-219 (702)
69 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 3E-11 69.0 4.4 56 579-634 2-59 (61)
70 PRK09112 DNA polymerase III su 98.2 5.2E-05 1.1E-09 83.2 18.1 199 164-377 21-241 (351)
71 cd01128 rho_factor Transcripti 98.2 1.9E-06 4.2E-11 89.2 6.4 88 194-283 17-113 (249)
72 PRK00440 rfc replication facto 98.2 3.9E-05 8.4E-10 85.2 17.3 182 166-375 17-202 (319)
73 PRK14956 DNA polymerase III su 98.2 1.5E-05 3.2E-10 89.2 13.5 194 166-376 18-222 (484)
74 PLN03025 replication factor C 98.2 3.3E-05 7.2E-10 84.9 16.2 183 166-374 13-198 (319)
75 PRK08727 hypothetical protein; 98.2 3E-05 6.4E-10 80.7 14.5 148 194-373 42-201 (233)
76 PRK14957 DNA polymerase III su 98.2 4.5E-05 9.7E-10 87.9 17.1 185 166-377 16-222 (546)
77 PRK07471 DNA polymerase III su 98.2 6.2E-05 1.3E-09 83.1 17.5 195 164-377 17-239 (365)
78 KOG2028 ATPase related to the 98.2 3E-05 6.5E-10 80.2 13.7 158 191-371 160-331 (554)
79 PLN03150 hypothetical protein; 98.1 2.2E-06 4.8E-11 102.6 5.9 92 579-670 419-512 (623)
80 PRK08084 DNA replication initi 98.1 3.9E-05 8.5E-10 79.9 14.5 154 194-379 46-212 (235)
81 PRK05642 DNA replication initi 98.1 4.3E-05 9.3E-10 79.5 14.4 155 194-380 46-212 (234)
82 TIGR00678 holB DNA polymerase 98.1 6.5E-05 1.4E-09 75.7 15.3 91 272-372 95-187 (188)
83 TIGR02397 dnaX_nterm DNA polym 98.1 7.4E-05 1.6E-09 84.3 17.5 185 166-377 14-219 (355)
84 PRK07940 DNA polymerase III su 98.1 6E-05 1.3E-09 83.9 16.2 183 166-376 5-213 (394)
85 PRK13341 recombination factor 98.1 2.8E-05 6.1E-10 93.1 14.5 174 166-373 28-214 (725)
86 PRK08903 DnaA regulatory inact 98.1 4.4E-05 9.4E-10 79.7 14.2 151 194-380 43-203 (227)
87 PRK09087 hypothetical protein; 98.1 6.2E-05 1.3E-09 77.5 14.8 141 194-377 45-196 (226)
88 PRK14962 DNA polymerase III su 98.1 7.6E-05 1.6E-09 85.3 16.9 188 166-379 14-222 (472)
89 PF00308 Bac_DnaA: Bacterial d 98.1 7.6E-05 1.6E-09 76.6 15.1 164 193-377 34-209 (219)
90 PRK08691 DNA polymerase III su 98.1 3.4E-05 7.3E-10 89.7 13.6 181 166-376 16-220 (709)
91 KOG1259 Nischarin, modulator o 98.1 5.9E-07 1.3E-11 89.9 -0.6 103 574-680 280-382 (490)
92 PRK07994 DNA polymerase III su 98.1 7.9E-05 1.7E-09 87.3 16.7 195 166-377 16-221 (647)
93 PRK09376 rho transcription ter 98.1 9.1E-06 2E-10 87.5 8.1 99 177-282 158-265 (416)
94 KOG4341 F-box protein containi 98.1 1.5E-07 3.3E-12 98.9 -5.2 291 727-1050 138-444 (483)
95 KOG2227 Pre-initiation complex 98.1 8.1E-05 1.8E-09 80.3 15.0 210 164-379 148-371 (529)
96 PRK05896 DNA polymerase III su 98.0 9.6E-05 2.1E-09 85.2 16.2 195 166-377 16-222 (605)
97 PRK14951 DNA polymerase III su 98.0 0.0001 2.2E-09 86.2 16.7 198 166-376 16-225 (618)
98 PRK14964 DNA polymerase III su 98.0 8.7E-05 1.9E-09 84.3 15.7 183 166-375 13-216 (491)
99 KOG0532 Leucine-rich repeat (L 98.0 7.3E-07 1.6E-11 97.4 -1.0 104 579-685 144-247 (722)
100 COG2255 RuvB Holliday junction 98.0 0.0002 4.4E-09 72.3 16.1 183 165-381 25-228 (332)
101 PF13855 LRR_8: Leucine rich r 98.0 4E-06 8.6E-11 66.4 3.3 57 986-1042 3-59 (61)
102 PF05621 TniB: Bacterial TniB 98.0 0.00016 3.4E-09 75.4 15.6 200 173-376 44-261 (302)
103 PRK14958 DNA polymerase III su 98.0 0.00011 2.3E-09 85.1 16.0 185 166-376 16-220 (509)
104 PLN03150 hypothetical protein; 98.0 7.5E-06 1.6E-10 98.2 6.8 113 926-1049 419-532 (623)
105 PRK14087 dnaA chromosomal repl 98.0 0.00013 2.8E-09 83.3 16.4 168 194-378 142-321 (450)
106 PRK14955 DNA polymerase III su 98.0 6.6E-05 1.4E-09 84.9 13.9 199 166-375 16-227 (397)
107 TIGR01242 26Sp45 26S proteasom 98.0 9.3E-05 2E-09 83.0 14.9 180 165-370 121-328 (364)
108 PRK14969 DNA polymerase III su 98.0 0.00015 3.3E-09 84.4 16.9 184 166-375 16-219 (527)
109 PF14516 AAA_35: AAA-like doma 98.0 0.0017 3.8E-08 71.4 24.3 203 163-383 8-246 (331)
110 KOG2120 SCF ubiquitin ligase, 98.0 2.8E-07 6.1E-12 92.3 -5.2 61 760-820 286-350 (419)
111 PRK14970 DNA polymerase III su 97.9 0.00028 6E-09 79.6 17.5 182 166-373 17-206 (367)
112 PRK09111 DNA polymerase III su 97.9 0.00023 4.9E-09 83.6 16.8 199 166-377 24-234 (598)
113 KOG2543 Origin recognition com 97.9 0.00069 1.5E-08 71.4 17.4 166 165-342 5-192 (438)
114 TIGR00767 rho transcription te 97.9 5.2E-05 1.1E-09 82.3 9.5 88 194-283 169-265 (415)
115 PRK14959 DNA polymerase III su 97.8 0.00037 8E-09 81.0 16.3 187 166-380 16-225 (624)
116 PRK07764 DNA polymerase III su 97.8 0.00039 8.4E-09 84.6 16.9 178 166-374 15-219 (824)
117 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.7E-10 57.1 3.1 34 602-635 2-35 (44)
118 PHA02544 44 clamp loader, smal 97.8 0.0002 4.4E-09 79.1 13.3 149 165-341 20-171 (316)
119 CHL00181 cbbX CbbX; Provisiona 97.8 0.00068 1.5E-08 72.6 16.7 134 194-344 60-210 (287)
120 TIGR02881 spore_V_K stage V sp 97.8 0.00036 7.8E-09 74.3 14.6 161 167-344 7-192 (261)
121 PRK07133 DNA polymerase III su 97.8 0.00046 1E-08 81.5 16.6 183 166-376 18-219 (725)
122 KOG1259 Nischarin, modulator o 97.8 4.4E-06 9.5E-11 83.8 -0.1 107 570-680 299-407 (490)
123 TIGR00362 DnaA chromosomal rep 97.8 0.00063 1.4E-08 77.7 17.3 161 193-374 136-308 (405)
124 PRK14953 DNA polymerase III su 97.8 0.00066 1.4E-08 78.2 17.3 185 166-377 16-221 (486)
125 PRK14971 DNA polymerase III su 97.8 0.00073 1.6E-08 80.1 18.0 183 166-375 17-221 (614)
126 PRK14950 DNA polymerase III su 97.8 0.00028 6E-09 84.0 14.6 196 166-377 16-222 (585)
127 TIGR03345 VI_ClpV1 type VI sec 97.8 0.0002 4.3E-09 88.3 13.8 183 166-370 187-390 (852)
128 PRK14952 DNA polymerase III su 97.8 0.0006 1.3E-08 79.6 16.9 185 166-378 13-222 (584)
129 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.3E-10 56.3 3.5 39 579-617 2-40 (44)
130 KOG1909 Ran GTPase-activating 97.7 2.4E-06 5.1E-11 88.3 -3.0 88 572-659 24-131 (382)
131 PRK14954 DNA polymerase III su 97.7 0.00061 1.3E-08 80.2 16.4 197 166-372 16-224 (620)
132 PRK08451 DNA polymerase III su 97.7 0.0013 2.8E-08 75.7 18.5 181 166-377 14-219 (535)
133 PRK06620 hypothetical protein; 97.7 0.00053 1.1E-08 70.0 13.9 137 194-375 45-188 (214)
134 PRK11331 5-methylcytosine-spec 97.7 0.00014 3.1E-09 80.4 10.2 117 166-295 175-295 (459)
135 TIGR02880 cbbX_cfxQ probable R 97.7 0.00079 1.7E-08 72.2 15.5 132 195-343 60-208 (284)
136 PF05673 DUF815: Protein of un 97.7 0.0007 1.5E-08 68.3 13.7 108 163-298 24-132 (249)
137 PRK06305 DNA polymerase III su 97.7 0.00082 1.8E-08 76.9 16.2 183 166-376 17-223 (451)
138 TIGR02639 ClpA ATP-dependent C 97.7 0.00038 8.1E-09 85.4 14.1 156 166-343 182-358 (731)
139 PRK03992 proteasome-activating 97.7 0.00043 9.4E-09 77.9 13.1 179 166-370 131-337 (389)
140 PRK14948 DNA polymerase III su 97.6 0.0014 3E-08 77.8 17.5 197 166-377 16-223 (620)
141 PRK14088 dnaA chromosomal repl 97.6 0.0015 3.3E-08 74.6 17.1 160 194-374 131-303 (440)
142 PRK00149 dnaA chromosomal repl 97.6 0.0013 2.9E-08 76.1 16.7 161 193-374 148-320 (450)
143 KOG2120 SCF ubiquitin ligase, 97.6 2.1E-06 4.5E-11 86.3 -5.4 117 924-1042 233-373 (419)
144 COG3267 ExeA Type II secretory 97.6 0.0035 7.6E-08 63.0 17.0 181 193-379 51-248 (269)
145 KOG0989 Replication factor C, 97.6 0.00057 1.2E-08 70.0 11.5 185 165-371 35-225 (346)
146 CHL00095 clpC Clp protease ATP 97.6 0.0004 8.6E-09 86.3 12.7 157 166-342 179-353 (821)
147 COG4886 Leucine-rich repeat (L 97.6 2.7E-05 5.8E-10 89.3 2.0 103 574-678 135-238 (394)
148 COG0593 DnaA ATPase involved i 97.6 0.0036 7.8E-08 68.9 18.2 167 192-378 112-292 (408)
149 PRK14086 dnaA chromosomal repl 97.6 0.0031 6.7E-08 73.1 18.5 159 194-373 315-485 (617)
150 KOG2004 Mitochondrial ATP-depe 97.6 0.0011 2.3E-08 75.5 13.9 107 165-284 410-516 (906)
151 PRK14965 DNA polymerase III su 97.5 0.0016 3.4E-08 77.1 15.9 183 166-376 16-221 (576)
152 PRK06647 DNA polymerase III su 97.5 0.0028 6E-08 74.3 17.4 194 166-376 16-220 (563)
153 PRK07399 DNA polymerase III su 97.5 0.0034 7.4E-08 68.1 16.9 197 166-377 4-222 (314)
154 PRK11034 clpA ATP-dependent Cl 97.5 0.0011 2.4E-08 80.2 13.7 158 166-343 186-362 (758)
155 PRK05707 DNA polymerase III su 97.5 0.0022 4.8E-08 69.9 14.7 97 272-376 105-203 (328)
156 PRK05563 DNA polymerase III su 97.4 0.0047 1E-07 72.8 17.7 193 166-375 16-219 (559)
157 KOG0531 Protein phosphatase 1, 97.4 3.9E-05 8.5E-10 87.9 0.4 101 574-678 91-192 (414)
158 TIGR00602 rad24 checkpoint pro 97.4 0.00096 2.1E-08 78.4 11.7 52 165-217 83-134 (637)
159 COG0466 Lon ATP-dependent Lon 97.4 0.0038 8.1E-08 71.7 15.7 166 165-343 322-508 (782)
160 KOG1909 Ran GTPase-activating 97.4 2.7E-05 5.9E-10 80.6 -1.4 66 570-635 50-131 (382)
161 PF00004 AAA: ATPase family as 97.4 0.00042 9.1E-09 65.3 6.8 22 196-217 1-22 (132)
162 KOG4579 Leucine-rich repeat (L 97.3 1.2E-05 2.6E-10 71.4 -3.6 97 579-677 28-128 (177)
163 PRK12422 chromosomal replicati 97.3 0.0037 8E-08 71.3 15.2 154 193-369 141-306 (445)
164 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0019 4E-08 80.7 13.9 158 166-343 173-349 (852)
165 KOG0531 Protein phosphatase 1, 97.3 4.1E-05 8.9E-10 87.7 -0.6 102 576-681 70-171 (414)
166 PRK10865 protein disaggregatio 97.2 0.0044 9.5E-08 77.0 15.4 46 166-217 178-223 (857)
167 PTZ00361 26 proteosome regulat 97.2 0.0022 4.7E-08 72.4 11.6 158 166-344 183-368 (438)
168 PRK10787 DNA-binding ATP-depen 97.2 0.0045 9.7E-08 75.7 14.8 166 165-343 321-506 (784)
169 KOG3665 ZYG-1-like serine/thre 97.2 0.00031 6.8E-09 83.9 4.6 109 543-660 145-262 (699)
170 smart00382 AAA ATPases associa 97.2 0.0023 5E-08 61.1 9.9 88 194-286 3-91 (148)
171 PTZ00454 26S protease regulato 97.2 0.0048 1E-07 69.1 13.5 179 166-370 145-351 (398)
172 PRK08116 hypothetical protein; 97.2 0.0018 3.8E-08 68.7 9.4 103 194-312 115-220 (268)
173 TIGR03689 pup_AAA proteasome A 97.1 0.0071 1.5E-07 69.3 14.4 168 166-343 182-378 (512)
174 KOG0741 AAA+-type ATPase [Post 97.1 0.0055 1.2E-07 67.3 12.5 148 191-366 536-704 (744)
175 PRK06871 DNA polymerase III su 97.1 0.023 5E-07 61.5 17.2 179 174-374 10-201 (325)
176 PRK08939 primosomal protein Dn 97.1 0.0024 5.2E-08 68.9 9.7 121 170-311 135-259 (306)
177 PRK06090 DNA polymerase III su 97.1 0.017 3.7E-07 62.3 16.1 167 173-376 10-201 (319)
178 TIGR00763 lon ATP-dependent pr 97.1 0.0062 1.3E-07 75.3 14.5 52 166-217 320-371 (775)
179 PRK08118 topology modulation p 97.1 0.00029 6.3E-09 68.9 2.3 35 195-229 3-37 (167)
180 PRK10536 hypothetical protein; 97.0 0.015 3.3E-07 59.7 14.4 135 167-314 56-214 (262)
181 KOG4579 Leucine-rich repeat (L 97.0 8.2E-05 1.8E-09 66.2 -1.5 91 574-666 49-140 (177)
182 PF10443 RNA12: RNA12 protein; 97.0 0.026 5.5E-07 62.0 16.7 206 171-393 1-297 (431)
183 CHL00176 ftsH cell division pr 97.0 0.0095 2.1E-07 70.8 14.7 177 166-368 183-386 (638)
184 KOG2982 Uncharacterized conser 97.0 0.00026 5.6E-09 71.6 1.4 85 575-659 68-157 (418)
185 KOG2228 Origin recognition com 97.0 0.0039 8.5E-08 64.8 9.7 173 166-343 24-219 (408)
186 PRK08769 DNA polymerase III su 97.0 0.025 5.5E-07 61.1 16.2 97 271-377 111-209 (319)
187 TIGR01241 FtsH_fam ATP-depende 96.9 0.014 3.1E-07 68.4 15.2 178 166-369 55-259 (495)
188 TIGR02640 gas_vesic_GvpN gas v 96.9 0.014 3E-07 62.1 13.6 54 174-241 10-63 (262)
189 KOG1514 Origin recognition com 96.9 0.029 6.4E-07 64.4 16.4 207 166-379 396-624 (767)
190 PF04665 Pox_A32: Poxvirus A32 96.9 0.0017 3.6E-08 66.3 6.1 35 195-232 15-49 (241)
191 PRK07261 topology modulation p 96.9 0.002 4.3E-08 63.4 6.3 67 195-284 2-68 (171)
192 PRK12377 putative replication 96.9 0.0043 9.2E-08 64.5 8.9 100 194-311 102-204 (248)
193 COG1222 RPT1 ATP-dependent 26S 96.9 0.038 8.2E-07 58.4 15.5 188 166-380 151-371 (406)
194 PTZ00494 tuzin-like protein; P 96.8 0.096 2.1E-06 57.1 18.8 170 161-343 366-544 (664)
195 COG1373 Predicted ATPase (AAA+ 96.8 0.017 3.7E-07 65.1 14.3 148 195-376 39-192 (398)
196 PRK13531 regulatory ATPase Rav 96.8 0.0067 1.4E-07 68.1 10.8 43 167-217 21-63 (498)
197 PRK12608 transcription termina 96.8 0.0073 1.6E-07 65.6 10.8 102 174-282 119-229 (380)
198 PF01695 IstB_IS21: IstB-like 96.8 0.002 4.2E-08 63.7 6.0 99 194-312 48-149 (178)
199 PRK07993 DNA polymerase III su 96.8 0.038 8.2E-07 60.6 16.0 171 173-376 9-204 (334)
200 PRK08058 DNA polymerase III su 96.8 0.031 6.6E-07 61.6 15.5 148 168-341 7-180 (329)
201 KOG0733 Nuclear AAA ATPase (VC 96.8 0.029 6.3E-07 63.1 14.7 178 166-369 190-395 (802)
202 PF13177 DNA_pol3_delta2: DNA 96.8 0.015 3.3E-07 56.5 11.4 120 170-314 1-143 (162)
203 PRK07952 DNA replication prote 96.7 0.0078 1.7E-07 62.4 9.8 101 194-311 100-203 (244)
204 PRK08181 transposase; Validate 96.7 0.0035 7.6E-08 66.0 7.4 99 195-312 108-208 (269)
205 COG2607 Predicted ATPase (AAA+ 96.7 0.016 3.4E-07 57.5 10.8 120 166-313 60-183 (287)
206 COG0542 clpA ATP-binding subun 96.7 0.0044 9.6E-08 73.3 8.4 125 166-299 491-619 (786)
207 KOG0991 Replication factor C, 96.7 0.032 7E-07 54.8 12.7 102 166-295 27-135 (333)
208 KOG1859 Leucine-rich repeat pr 96.7 0.00018 4E-09 81.3 -3.0 81 574-658 183-264 (1096)
209 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0019 4E-08 69.8 4.5 52 167-218 52-103 (361)
210 PRK10865 protein disaggregatio 96.6 0.017 3.6E-07 72.0 13.3 138 166-312 568-720 (857)
211 PF07693 KAP_NTPase: KAP famil 96.6 0.033 7.1E-07 61.9 14.4 45 172-219 2-46 (325)
212 PF02562 PhoH: PhoH-like prote 96.6 0.009 2E-07 59.6 8.6 130 171-313 5-156 (205)
213 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0087 1.9E-07 74.2 10.3 136 166-311 566-717 (852)
214 TIGR03346 chaperone_ClpB ATP-d 96.6 0.012 2.7E-07 73.4 11.7 136 166-312 565-717 (852)
215 PRK06921 hypothetical protein; 96.6 0.0084 1.8E-07 63.4 8.7 37 194-232 118-154 (266)
216 PRK09183 transposase/IS protei 96.5 0.0044 9.5E-08 65.4 6.3 24 194-217 103-126 (259)
217 PRK06526 transposase; Provisio 96.5 0.005 1.1E-07 64.5 6.6 25 194-218 99-123 (254)
218 KOG1969 DNA replication checkp 96.5 0.011 2.4E-07 67.8 9.5 85 191-294 324-408 (877)
219 PRK04296 thymidine kinase; Pro 96.5 0.0065 1.4E-07 61.0 7.1 114 194-315 3-118 (190)
220 TIGR02639 ClpA ATP-dependent C 96.5 0.016 3.4E-07 71.4 11.5 119 166-298 454-578 (731)
221 KOG2739 Leucine-rich acidic nu 96.4 0.002 4.2E-08 64.9 2.7 108 574-684 39-155 (260)
222 COG1223 Predicted ATPase (AAA+ 96.4 0.039 8.4E-07 55.3 11.3 157 166-343 121-297 (368)
223 PF14532 Sigma54_activ_2: Sigm 96.4 0.0031 6.6E-08 59.7 3.7 109 169-313 1-110 (138)
224 PRK06964 DNA polymerase III su 96.4 0.065 1.4E-06 58.5 14.3 95 271-377 130-226 (342)
225 PRK06835 DNA replication prote 96.3 0.0057 1.2E-07 66.5 5.9 102 194-312 184-288 (329)
226 COG2884 FtsE Predicted ATPase 96.3 0.031 6.7E-07 53.5 9.6 123 194-320 29-204 (223)
227 PRK04132 replication factor C 96.3 0.082 1.8E-06 64.4 15.7 156 201-376 574-731 (846)
228 TIGR02237 recomb_radB DNA repa 96.2 0.017 3.6E-07 59.4 8.6 48 191-242 10-57 (209)
229 CHL00095 clpC Clp protease ATP 96.2 0.021 4.5E-07 71.3 10.8 136 166-312 509-661 (821)
230 KOG3665 ZYG-1-like serine/thre 96.2 0.0015 3.3E-08 78.2 0.8 106 573-680 143-258 (699)
231 KOG1859 Leucine-rich repeat pr 96.2 0.0004 8.6E-09 78.8 -3.8 100 578-682 164-264 (1096)
232 COG2812 DnaX DNA polymerase II 96.2 0.021 4.5E-07 65.0 9.7 193 166-375 16-219 (515)
233 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.023 4.9E-07 59.7 9.6 51 191-241 17-70 (235)
234 PF13207 AAA_17: AAA domain; P 96.1 0.0036 7.9E-08 57.8 2.8 23 195-217 1-23 (121)
235 KOG0731 AAA+-type ATPase conta 96.1 0.094 2E-06 62.0 14.8 183 166-373 311-521 (774)
236 COG0470 HolB ATPase involved i 96.1 0.028 6.2E-07 62.4 10.5 143 167-329 2-167 (325)
237 PRK09361 radB DNA repair and r 96.1 0.023 5E-07 59.1 9.2 46 191-240 21-66 (225)
238 COG5238 RNA1 Ran GTPase-activa 96.1 0.0033 7.1E-08 63.0 2.6 84 576-659 28-131 (388)
239 PRK08699 DNA polymerase III su 96.1 0.047 1E-06 59.6 11.7 71 272-342 112-184 (325)
240 PF00158 Sigma54_activat: Sigm 96.1 0.013 2.8E-07 57.1 6.6 132 168-312 1-143 (168)
241 TIGR03499 FlhF flagellar biosy 96.1 0.042 9.2E-07 58.9 11.0 88 192-282 193-281 (282)
242 CHL00195 ycf46 Ycf46; Provisio 96.1 0.067 1.5E-06 61.6 13.2 181 166-370 228-429 (489)
243 PF07728 AAA_5: AAA domain (dy 96.1 0.0016 3.6E-08 61.8 0.2 87 196-296 2-88 (139)
244 PRK06696 uridine kinase; Valid 96.1 0.0078 1.7E-07 62.4 5.2 46 170-218 2-47 (223)
245 KOG0744 AAA+-type ATPase [Post 96.1 0.047 1E-06 56.6 10.5 79 194-282 178-259 (423)
246 PRK06067 flagellar accessory p 96.1 0.037 7.9E-07 58.0 10.3 87 191-283 23-130 (234)
247 PF00448 SRP54: SRP54-type pro 96.1 0.029 6.3E-07 56.3 9.0 88 193-283 1-93 (196)
248 KOG1947 Leucine rich repeat pr 96.0 0.00051 1.1E-08 81.5 -4.4 161 867-1047 268-442 (482)
249 TIGR02902 spore_lonB ATP-depen 96.0 0.029 6.4E-07 65.9 10.2 45 166-216 65-109 (531)
250 PRK11034 clpA ATP-dependent Cl 96.0 0.026 5.7E-07 68.5 9.8 121 166-298 458-582 (758)
251 cd01394 radB RadB. The archaea 96.0 0.033 7.1E-07 57.7 9.4 44 191-237 17-60 (218)
252 KOG1644 U2-associated snRNP A' 96.0 0.0085 1.8E-07 57.8 4.4 99 578-679 42-147 (233)
253 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.044 9.6E-07 52.2 9.5 103 194-316 27-130 (144)
254 PRK11889 flhF flagellar biosyn 96.0 0.09 2E-06 57.5 12.7 91 192-285 240-332 (436)
255 cd01393 recA_like RecA is a b 96.0 0.04 8.7E-07 57.4 10.0 92 191-283 17-124 (226)
256 cd03247 ABCC_cytochrome_bd The 95.9 0.044 9.6E-07 54.5 9.6 117 194-317 29-161 (178)
257 TIGR01243 CDC48 AAA family ATP 95.9 0.09 1.9E-06 65.1 14.2 181 166-372 178-383 (733)
258 cd01120 RecA-like_NTPases RecA 95.9 0.03 6.6E-07 54.8 8.4 40 195-237 1-40 (165)
259 cd00983 recA RecA is a bacter 95.9 0.026 5.6E-07 60.8 8.2 84 191-282 53-142 (325)
260 TIGR01243 CDC48 AAA family ATP 95.9 0.12 2.5E-06 64.1 15.1 179 166-370 453-657 (733)
261 COG1484 DnaC DNA replication p 95.9 0.02 4.3E-07 60.1 7.2 80 194-291 106-185 (254)
262 cd03214 ABC_Iron-Siderophores_ 95.9 0.047 1E-06 54.4 9.6 118 194-316 26-161 (180)
263 COG0542 clpA ATP-binding subun 95.9 0.029 6.2E-07 66.7 9.0 159 166-343 170-346 (786)
264 PHA02244 ATPase-like protein 95.9 0.065 1.4E-06 58.2 11.0 22 195-216 121-142 (383)
265 cd03228 ABCC_MRP_Like The MRP 95.9 0.05 1.1E-06 53.7 9.7 118 194-317 29-159 (171)
266 KOG2035 Replication factor C, 95.8 0.077 1.7E-06 53.9 10.6 207 168-396 15-259 (351)
267 PRK13695 putative NTPase; Prov 95.8 0.013 2.9E-07 58.0 5.5 23 196-218 3-25 (174)
268 PRK09354 recA recombinase A; P 95.8 0.033 7.2E-07 60.5 8.7 85 191-283 58-148 (349)
269 PRK15429 formate hydrogenlyase 95.8 0.16 3.4E-06 62.5 15.5 133 166-313 376-521 (686)
270 PRK05541 adenylylsulfate kinas 95.8 0.017 3.6E-07 57.5 5.8 36 192-230 6-41 (176)
271 PRK15455 PrkA family serine pr 95.7 0.0075 1.6E-07 68.5 3.4 52 167-218 77-128 (644)
272 PF00560 LRR_1: Leucine Rich R 95.7 0.0043 9.4E-08 37.0 0.8 19 603-621 2-20 (22)
273 PF13604 AAA_30: AAA domain; P 95.7 0.019 4.2E-07 57.8 6.0 105 194-311 19-129 (196)
274 TIGR02012 tigrfam_recA protein 95.7 0.039 8.4E-07 59.4 8.5 85 191-283 53-143 (321)
275 PF08423 Rad51: Rad51; InterP 95.7 0.025 5.4E-07 59.6 7.0 56 193-249 38-96 (256)
276 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.025 5.4E-07 53.9 6.2 117 194-314 3-139 (159)
277 KOG2123 Uncharacterized conser 95.7 0.00057 1.2E-08 68.6 -4.9 104 576-682 17-127 (388)
278 cd03238 ABC_UvrA The excision 95.6 0.05 1.1E-06 53.5 8.6 114 194-317 22-153 (176)
279 TIGR01650 PD_CobS cobaltochela 95.6 0.22 4.9E-06 53.5 14.0 46 165-218 44-89 (327)
280 PRK05800 cobU adenosylcobinami 95.6 0.013 2.8E-07 57.3 4.3 22 195-216 3-24 (170)
281 COG1875 NYN ribonuclease and A 95.6 0.042 9E-07 58.2 8.0 135 169-314 227-389 (436)
282 PRK05703 flhF flagellar biosyn 95.6 0.12 2.7E-06 58.6 12.5 89 193-284 221-310 (424)
283 TIGR02238 recomb_DMC1 meiotic 95.5 0.055 1.2E-06 58.6 9.2 60 191-251 94-156 (313)
284 PRK12727 flagellar biosynthesi 95.5 0.055 1.2E-06 61.6 9.4 90 192-284 349-439 (559)
285 cd03223 ABCD_peroxisomal_ALDP 95.5 0.09 2E-06 51.5 10.0 117 194-316 28-151 (166)
286 TIGR02974 phageshock_pspF psp 95.5 0.091 2E-06 57.7 11.0 46 168-217 1-46 (329)
287 COG1126 GlnQ ABC-type polar am 95.5 0.08 1.7E-06 52.1 9.1 121 194-318 29-201 (240)
288 cd03216 ABC_Carb_Monos_I This 95.5 0.041 9E-07 53.7 7.4 114 194-315 27-144 (163)
289 PRK12723 flagellar biosynthesi 95.5 0.082 1.8E-06 58.8 10.5 92 192-285 173-266 (388)
290 COG1121 ZnuC ABC-type Mn/Zn tr 95.5 0.067 1.5E-06 55.0 8.9 121 194-316 31-202 (254)
291 cd01133 F1-ATPase_beta F1 ATP 95.4 0.069 1.5E-06 55.9 8.9 87 194-282 70-172 (274)
292 PF03215 Rad17: Rad17 cell cyc 95.4 0.099 2.1E-06 60.6 11.1 60 167-232 20-79 (519)
293 cd03222 ABC_RNaseL_inhibitor T 95.4 0.08 1.7E-06 52.1 8.9 101 194-316 26-135 (177)
294 cd00544 CobU Adenosylcobinamid 95.4 0.041 8.9E-07 53.6 6.8 78 196-282 2-82 (169)
295 cd03230 ABC_DR_subfamily_A Thi 95.4 0.047 1E-06 54.0 7.3 117 194-317 27-159 (173)
296 COG1136 SalX ABC-type antimicr 95.3 0.13 2.8E-06 52.0 10.2 62 259-320 146-210 (226)
297 cd01124 KaiC KaiC is a circadi 95.3 0.048 1E-06 54.8 7.5 37 196-235 2-38 (187)
298 PRK05439 pantothenate kinase; 95.3 0.085 1.8E-06 56.6 9.5 82 191-274 84-166 (311)
299 KOG0730 AAA+-type ATPase [Post 95.3 0.21 4.6E-06 57.3 12.9 158 167-345 435-617 (693)
300 KOG0734 AAA+-type ATPase conta 95.3 0.11 2.3E-06 57.8 10.1 52 167-218 305-362 (752)
301 PRK12724 flagellar biosynthesi 95.3 0.07 1.5E-06 59.2 8.9 25 193-217 223-247 (432)
302 COG4608 AppF ABC-type oligopep 95.3 0.072 1.6E-06 54.8 8.3 124 194-321 40-178 (268)
303 TIGR01817 nifA Nif-specific re 95.2 0.17 3.7E-06 60.2 12.9 134 165-312 195-340 (534)
304 PRK07667 uridine kinase; Provi 95.2 0.024 5.1E-07 57.2 4.7 40 175-218 3-42 (193)
305 PRK14722 flhF flagellar biosyn 95.2 0.059 1.3E-06 59.4 8.1 90 193-285 137-227 (374)
306 KOG2982 Uncharacterized conser 95.2 0.023 4.9E-07 58.1 4.4 85 726-818 70-156 (418)
307 KOG0736 Peroxisome assembly fa 95.2 0.68 1.5E-05 54.2 16.3 98 166-284 672-775 (953)
308 PRK11608 pspF phage shock prot 95.1 0.058 1.3E-06 59.3 7.9 46 167-216 7-52 (326)
309 KOG0735 AAA+-type ATPase [Post 95.1 0.076 1.6E-06 61.0 8.7 72 193-283 431-504 (952)
310 PLN03187 meiotic recombination 95.1 0.097 2.1E-06 57.2 9.4 60 191-251 124-186 (344)
311 KOG1947 Leucine rich repeat pr 95.1 0.0015 3.3E-08 77.4 -5.0 184 866-1070 241-442 (482)
312 COG5238 RNA1 Ran GTPase-activa 95.1 0.0093 2E-07 59.9 1.4 196 596-818 25-252 (388)
313 TIGR00554 panK_bact pantothena 95.1 0.087 1.9E-06 56.1 8.7 81 191-273 60-141 (290)
314 PLN00020 ribulose bisphosphate 95.0 0.041 8.9E-07 59.2 6.1 28 191-218 146-173 (413)
315 PF00006 ATP-synt_ab: ATP synt 95.0 0.11 2.4E-06 52.7 8.9 84 194-282 16-114 (215)
316 COG1618 Predicted nucleotide k 95.0 0.016 3.5E-07 53.8 2.5 26 194-219 6-31 (179)
317 cd03246 ABCC_Protease_Secretio 95.0 0.098 2.1E-06 51.7 8.4 116 194-317 29-160 (173)
318 cd01122 GP4d_helicase GP4d_hel 95.0 0.21 4.5E-06 53.7 11.6 53 193-249 30-82 (271)
319 COG0572 Udk Uridine kinase [Nu 94.9 0.036 7.9E-07 55.2 5.0 77 192-274 7-85 (218)
320 PRK14974 cell division protein 94.9 0.17 3.7E-06 55.2 10.6 90 192-285 139-234 (336)
321 COG0563 Adk Adenylate kinase a 94.9 0.036 7.8E-07 54.5 4.9 24 195-218 2-25 (178)
322 PRK04301 radA DNA repair and r 94.9 0.099 2.2E-06 57.4 8.9 58 191-249 100-160 (317)
323 KOG1051 Chaperone HSP104 and r 94.9 0.17 3.8E-06 61.3 11.3 119 167-297 563-684 (898)
324 KOG1644 U2-associated snRNP A' 94.8 0.031 6.7E-07 54.1 4.0 85 573-658 59-150 (233)
325 cd02025 PanK Pantothenate kina 94.8 0.085 1.8E-06 54.2 7.7 24 195-218 1-24 (220)
326 PRK12726 flagellar biosynthesi 94.8 0.24 5.2E-06 54.1 11.1 91 191-284 204-296 (407)
327 PTZ00088 adenylate kinase 1; P 94.8 0.025 5.5E-07 58.2 3.7 23 195-217 8-30 (229)
328 cd03115 SRP The signal recogni 94.8 0.16 3.5E-06 50.2 9.4 24 195-218 2-25 (173)
329 PF12775 AAA_7: P-loop contain 94.8 0.024 5.2E-07 60.2 3.6 90 176-286 23-113 (272)
330 TIGR00959 ffh signal recogniti 94.8 0.15 3.3E-06 57.6 10.0 26 192-217 98-123 (428)
331 KOG0728 26S proteasome regulat 94.8 0.86 1.9E-05 45.6 13.7 156 167-343 147-331 (404)
332 TIGR02239 recomb_RAD51 DNA rep 94.8 0.12 2.7E-06 56.1 9.1 58 191-249 94-154 (316)
333 KOG0733 Nuclear AAA ATPase (VC 94.7 0.46 1E-05 54.0 13.3 132 193-345 545-694 (802)
334 TIGR00390 hslU ATP-dependent p 94.7 0.062 1.3E-06 59.3 6.6 84 166-249 12-104 (441)
335 PRK13539 cytochrome c biogenes 94.7 0.16 3.6E-06 51.9 9.5 63 265-330 137-201 (207)
336 cd01131 PilT Pilus retraction 94.7 0.04 8.6E-07 55.8 4.8 110 194-315 2-111 (198)
337 PF00485 PRK: Phosphoribulokin 94.7 0.12 2.7E-06 52.1 8.4 80 195-277 1-87 (194)
338 PRK08533 flagellar accessory p 94.6 0.2 4.3E-06 52.0 9.8 48 193-245 24-71 (230)
339 PTZ00301 uridine kinase; Provi 94.6 0.055 1.2E-06 54.8 5.5 25 193-217 3-27 (210)
340 PF13238 AAA_18: AAA domain; P 94.6 0.025 5.5E-07 52.7 2.8 21 196-216 1-21 (129)
341 PRK00771 signal recognition pa 94.5 0.2 4.4E-06 56.7 10.4 88 192-283 94-185 (437)
342 cd01125 repA Hexameric Replica 94.5 0.24 5.3E-06 51.9 10.5 22 195-216 3-24 (239)
343 TIGR02858 spore_III_AA stage I 94.5 0.38 8.3E-06 50.8 11.8 127 174-316 97-232 (270)
344 COG1102 Cmk Cytidylate kinase 94.5 0.063 1.4E-06 50.0 5.1 44 195-252 2-45 (179)
345 COG4618 ArpD ABC-type protease 94.5 0.12 2.5E-06 57.5 7.9 22 194-215 363-384 (580)
346 cd03229 ABC_Class3 This class 94.5 0.099 2.1E-06 52.0 7.1 24 194-217 27-50 (178)
347 PRK09270 nucleoside triphospha 94.5 0.16 3.5E-06 52.8 9.0 28 191-218 31-58 (229)
348 KOG2739 Leucine-rich acidic nu 94.5 0.027 5.9E-07 57.0 2.9 83 597-682 39-126 (260)
349 PF00560 LRR_1: Leucine Rich R 94.5 0.018 3.9E-07 34.3 1.1 22 579-600 1-22 (22)
350 COG0468 RecA RecA/RadA recombi 94.5 0.16 3.5E-06 53.4 8.7 89 191-283 58-151 (279)
351 PRK10733 hflB ATP-dependent me 94.5 0.25 5.5E-06 59.7 11.7 157 167-344 153-336 (644)
352 PF10236 DAP3: Mitochondrial r 94.4 1.1 2.3E-05 48.9 15.3 49 324-373 258-306 (309)
353 PF13481 AAA_25: AAA domain; P 94.4 0.18 3.9E-06 51.0 8.9 43 194-236 33-82 (193)
354 cd03217 ABC_FeS_Assembly ABC-t 94.4 0.17 3.7E-06 51.4 8.7 120 194-317 27-168 (200)
355 PRK05201 hslU ATP-dependent pr 94.4 0.083 1.8E-06 58.3 6.6 84 166-249 15-107 (443)
356 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.22 4.9E-06 52.0 9.8 49 191-244 19-67 (237)
357 TIGR00064 ftsY signal recognit 94.4 0.2 4.4E-06 53.2 9.4 90 191-284 70-165 (272)
358 PRK12678 transcription termina 94.4 0.038 8.2E-07 62.8 4.0 96 177-282 405-512 (672)
359 cd02019 NK Nucleoside/nucleoti 94.4 0.029 6.3E-07 45.4 2.4 23 195-217 1-23 (69)
360 PRK10867 signal recognition pa 94.3 0.14 3E-06 57.9 8.4 27 192-218 99-125 (433)
361 PRK06002 fliI flagellum-specif 94.3 0.18 3.9E-06 56.7 9.2 85 194-282 166-263 (450)
362 PF13671 AAA_33: AAA domain; P 94.3 0.034 7.4E-07 53.0 3.2 22 195-216 1-22 (143)
363 PRK08233 hypothetical protein; 94.3 0.034 7.4E-07 55.7 3.3 25 193-217 3-27 (182)
364 TIGR00235 udk uridine kinase. 94.2 0.036 7.8E-07 56.7 3.3 27 191-217 4-30 (207)
365 PLN03186 DNA repair protein RA 94.2 0.25 5.5E-06 54.1 9.9 59 191-250 121-182 (342)
366 PRK05480 uridine/cytidine kina 94.2 0.037 8E-07 56.8 3.4 27 191-217 4-30 (209)
367 PRK05022 anaerobic nitric oxid 94.2 0.22 4.9E-06 58.6 10.2 134 165-313 186-332 (509)
368 KOG0924 mRNA splicing factor A 94.1 0.28 6.1E-06 56.0 10.0 117 194-314 372-511 (1042)
369 TIGR03878 thermo_KaiC_2 KaiC d 94.1 0.16 3.4E-06 53.9 8.0 41 191-234 34-74 (259)
370 PRK07132 DNA polymerase III su 94.1 2 4.3E-05 46.2 16.3 156 193-375 18-184 (299)
371 PF13306 LRR_5: Leucine rich r 94.1 0.07 1.5E-06 49.7 4.8 75 1002-1081 52-128 (129)
372 PF08298 AAA_PrkA: PrkA AAA do 94.1 0.063 1.4E-06 57.6 4.7 54 165-218 60-113 (358)
373 PTZ00035 Rad51 protein; Provis 94.1 0.4 8.6E-06 52.8 11.1 59 191-250 116-177 (337)
374 COG0464 SpoVK ATPases of the A 94.0 0.62 1.4E-05 54.9 13.7 157 167-344 243-424 (494)
375 PF07724 AAA_2: AAA domain (Cd 94.0 0.05 1.1E-06 53.3 3.7 43 193-237 3-45 (171)
376 cd00267 ABC_ATPase ABC (ATP-bi 94.0 0.13 2.7E-06 50.0 6.5 117 194-317 26-144 (157)
377 TIGR02236 recomb_radA DNA repa 94.0 0.3 6.5E-06 53.6 10.2 58 191-249 93-153 (310)
378 PF08433 KTI12: Chromatin asso 94.0 0.1 2.3E-06 55.1 6.3 24 195-218 3-26 (270)
379 cd03215 ABC_Carb_Monos_II This 94.0 0.26 5.7E-06 49.2 8.9 24 194-217 27-50 (182)
380 PF03308 ArgK: ArgK protein; 94.0 0.09 2E-06 53.7 5.4 63 174-241 14-76 (266)
381 TIGR00150 HI0065_YjeE ATPase, 93.9 0.083 1.8E-06 48.7 4.7 42 173-218 6-47 (133)
382 PRK06547 hypothetical protein; 93.9 0.049 1.1E-06 53.3 3.4 27 191-217 13-39 (172)
383 PRK06762 hypothetical protein; 93.9 0.044 9.6E-07 53.8 3.1 24 194-217 3-26 (166)
384 PRK08972 fliI flagellum-specif 93.9 0.22 4.8E-06 55.8 8.6 84 194-282 163-261 (444)
385 COG1224 TIP49 DNA helicase TIP 93.9 0.12 2.6E-06 54.6 6.1 52 165-220 38-92 (450)
386 TIGR03881 KaiC_arch_4 KaiC dom 93.8 0.25 5.3E-06 51.6 8.8 116 191-312 18-165 (229)
387 COG4088 Predicted nucleotide k 93.8 0.086 1.9E-06 51.1 4.7 25 194-218 2-26 (261)
388 TIGR00708 cobA cob(I)alamin ad 93.8 0.21 4.5E-06 48.3 7.3 116 194-313 6-140 (173)
389 cd02027 APSK Adenosine 5'-phos 93.8 0.24 5.2E-06 47.4 7.9 23 195-217 1-23 (149)
390 cd03369 ABCC_NFT1 Domain 2 of 93.8 0.53 1.1E-05 48.1 10.9 23 194-216 35-57 (207)
391 cd03263 ABC_subfamily_A The AB 93.8 0.34 7.3E-06 50.2 9.6 23 194-216 29-51 (220)
392 COG2274 SunT ABC-type bacterio 93.8 0.37 8.1E-06 58.2 11.0 52 265-316 619-672 (709)
393 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.7 0.41 8.9E-06 49.6 10.1 24 194-217 49-72 (224)
394 COG1428 Deoxynucleoside kinase 93.7 0.043 9.3E-07 53.9 2.5 26 193-218 4-29 (216)
395 TIGR03498 FliI_clade3 flagella 93.7 0.24 5.2E-06 55.6 8.8 85 194-282 141-239 (418)
396 PF00154 RecA: recA bacterial 93.7 0.12 2.7E-06 55.4 6.2 85 191-283 51-141 (322)
397 cd03281 ABC_MSH5_euk MutS5 hom 93.7 0.08 1.7E-06 54.1 4.7 22 194-215 30-51 (213)
398 cd03244 ABCC_MRP_domain2 Domai 93.7 0.5 1.1E-05 49.0 10.7 23 194-216 31-53 (221)
399 cd01121 Sms Sms (bacterial rad 93.7 0.36 7.8E-06 53.7 10.0 82 192-282 81-167 (372)
400 PRK06217 hypothetical protein; 93.7 0.094 2E-06 52.4 5.0 24 195-218 3-26 (183)
401 COG0396 sufC Cysteine desulfur 93.6 0.52 1.1E-05 47.0 9.8 63 262-324 151-215 (251)
402 TIGR01069 mutS2 MutS2 family p 93.6 0.046 1E-06 66.9 3.2 112 272-393 401-518 (771)
403 PRK13543 cytochrome c biogenes 93.6 0.53 1.1E-05 48.4 10.6 24 194-217 38-61 (214)
404 PRK08927 fliI flagellum-specif 93.6 0.32 6.9E-06 54.7 9.4 84 194-282 159-257 (442)
405 PRK03839 putative kinase; Prov 93.6 0.047 1E-06 54.5 2.7 23 195-217 2-24 (180)
406 PHA00729 NTP-binding motif con 93.6 0.09 2E-06 53.2 4.6 25 193-217 17-41 (226)
407 TIGR03522 GldA_ABC_ATP gliding 93.6 0.49 1.1E-05 51.6 10.8 23 194-216 29-51 (301)
408 cd03213 ABCG_EPDR ABCG transpo 93.5 0.43 9.3E-06 48.2 9.6 24 194-217 36-59 (194)
409 PRK04040 adenylate kinase; Pro 93.5 0.058 1.3E-06 53.8 3.2 24 194-217 3-26 (188)
410 cd01136 ATPase_flagellum-secre 93.5 0.42 9E-06 51.8 9.8 84 194-282 70-168 (326)
411 COG4181 Predicted ABC-type tra 93.5 0.5 1.1E-05 44.6 8.8 85 236-320 121-214 (228)
412 PRK14723 flhF flagellar biosyn 93.5 0.47 1E-05 57.1 11.0 88 193-283 185-273 (767)
413 PF00910 RNA_helicase: RNA hel 93.4 0.043 9.3E-07 49.1 1.9 23 196-218 1-23 (107)
414 PRK09519 recA DNA recombinatio 93.4 0.26 5.7E-06 59.4 8.9 85 191-283 58-148 (790)
415 PRK08149 ATP synthase SpaL; Va 93.4 0.26 5.7E-06 55.3 8.4 84 194-282 152-250 (428)
416 PRK04328 hypothetical protein; 93.4 0.34 7.3E-06 51.1 8.8 42 191-235 21-62 (249)
417 COG1120 FepC ABC-type cobalami 93.3 0.38 8.3E-06 49.8 8.8 58 262-319 145-205 (258)
418 PRK05917 DNA polymerase III su 93.3 1 2.2E-05 47.8 12.2 132 174-330 5-154 (290)
419 KOG0739 AAA+-type ATPase [Post 93.3 2.3 5E-05 44.0 13.9 95 167-283 134-235 (439)
420 TIGR01360 aden_kin_iso1 adenyl 93.3 0.058 1.3E-06 54.3 2.9 24 193-216 3-26 (188)
421 PRK05973 replicative DNA helic 93.3 0.9 2E-05 46.8 11.4 115 192-314 63-194 (237)
422 COG2019 AdkA Archaeal adenylat 93.3 0.075 1.6E-06 49.7 3.2 25 193-217 4-28 (189)
423 COG1703 ArgK Putative periplas 93.3 0.083 1.8E-06 54.7 3.8 64 176-244 38-101 (323)
424 cd01135 V_A-ATPase_B V/A-type 93.3 0.48 1E-05 49.6 9.5 89 194-282 70-175 (276)
425 cd03231 ABC_CcmA_heme_exporter 93.3 0.66 1.4E-05 47.2 10.5 23 194-216 27-49 (201)
426 PRK00625 shikimate kinase; Pro 93.3 0.055 1.2E-06 53.1 2.5 23 195-217 2-24 (173)
427 cd03232 ABC_PDR_domain2 The pl 93.2 0.43 9.3E-06 48.1 9.1 23 194-216 34-56 (192)
428 PRK14721 flhF flagellar biosyn 93.2 0.35 7.6E-06 54.3 9.0 25 192-216 190-214 (420)
429 PRK05922 type III secretion sy 93.2 0.46 9.9E-06 53.4 9.9 84 194-282 158-256 (434)
430 PRK06995 flhF flagellar biosyn 93.2 0.45 9.8E-06 54.4 9.9 26 193-218 256-281 (484)
431 COG4133 CcmA ABC-type transpor 93.2 0.86 1.9E-05 44.0 10.0 53 262-314 137-191 (209)
432 cd03282 ABC_MSH4_euk MutS4 hom 93.1 0.07 1.5E-06 54.0 3.1 118 194-320 30-158 (204)
433 TIGR01425 SRP54_euk signal rec 93.1 0.56 1.2E-05 52.8 10.3 27 192-218 99-125 (429)
434 COG2842 Uncharacterized ATPase 93.1 4.4 9.5E-05 42.5 15.8 94 194-296 95-188 (297)
435 PF06309 Torsin: Torsin; Inte 93.1 0.18 3.9E-06 45.5 5.2 46 168-216 27-76 (127)
436 KOG0743 AAA+-type ATPase [Post 93.1 1.2 2.5E-05 49.3 12.3 69 305-380 339-413 (457)
437 KOG0473 Leucine-rich repeat pr 93.0 0.0049 1.1E-07 60.4 -5.0 85 574-659 38-122 (326)
438 COG0714 MoxR-like ATPases [Gen 93.0 0.19 4.1E-06 55.6 6.6 105 167-295 25-134 (329)
439 PRK09544 znuC high-affinity zi 93.0 0.46 1E-05 50.1 9.2 24 194-217 31-54 (251)
440 cd01134 V_A-ATPase_A V/A-type 93.0 0.61 1.3E-05 50.3 9.9 60 177-246 146-206 (369)
441 cd03251 ABCC_MsbA MsbA is an e 93.0 0.9 2E-05 47.5 11.4 23 194-216 29-51 (234)
442 TIGR01359 UMP_CMP_kin_fam UMP- 93.0 0.057 1.2E-06 54.1 2.2 23 195-217 1-23 (183)
443 TIGR02868 CydC thiol reductant 92.9 0.4 8.7E-06 57.3 9.7 26 193-218 361-386 (529)
444 KOG2170 ATPase of the AAA+ sup 92.9 0.22 4.8E-06 51.5 6.2 115 167-295 83-200 (344)
445 PF07726 AAA_3: ATPase family 92.9 0.057 1.2E-06 48.8 1.8 22 196-217 2-23 (131)
446 PRK07594 type III secretion sy 92.9 0.39 8.4E-06 54.1 8.7 84 194-282 156-254 (433)
447 PRK09099 type III secretion sy 92.9 0.41 8.9E-06 54.1 9.0 85 194-282 164-262 (441)
448 TIGR03575 selen_PSTK_euk L-ser 92.9 0.28 6.1E-06 53.4 7.4 23 196-218 2-24 (340)
449 TIGR02322 phosphon_PhnN phosph 92.9 0.076 1.6E-06 52.9 2.9 24 194-217 2-25 (179)
450 TIGR03771 anch_rpt_ABC anchore 92.9 0.76 1.6E-05 47.6 10.5 23 194-216 7-29 (223)
451 TIGR03496 FliI_clade1 flagella 92.9 0.47 1E-05 53.4 9.3 84 194-282 138-236 (411)
452 cd03240 ABC_Rad50 The catalyti 92.8 0.51 1.1E-05 47.9 8.9 53 265-317 131-187 (204)
453 PRK10875 recD exonuclease V su 92.8 0.39 8.4E-06 57.1 9.1 117 194-313 168-302 (615)
454 PF13306 LRR_5: Leucine rich r 92.8 0.14 3.1E-06 47.6 4.6 113 921-1051 8-120 (129)
455 PF03193 DUF258: Protein of un 92.8 0.13 2.9E-06 49.0 4.2 36 173-217 24-59 (161)
456 KOG0738 AAA+-type ATPase [Post 92.8 0.18 4E-06 53.8 5.6 50 168-217 214-269 (491)
457 PF01583 APS_kinase: Adenylyls 92.8 0.096 2.1E-06 49.8 3.3 26 194-219 3-28 (156)
458 PRK00279 adk adenylate kinase; 92.8 0.19 4E-06 51.8 5.7 23 195-217 2-24 (215)
459 PF06745 KaiC: KaiC; InterPro 92.8 0.15 3.2E-06 53.1 5.0 87 191-282 17-124 (226)
460 PRK10416 signal recognition pa 92.8 0.54 1.2E-05 51.2 9.4 27 192-218 113-139 (318)
461 PRK00889 adenylylsulfate kinas 92.7 0.093 2E-06 52.0 3.4 26 193-218 4-29 (175)
462 KOG1532 GTPase XAB1, interacts 92.7 0.092 2E-06 53.1 3.1 29 191-219 17-45 (366)
463 PF03969 AFG1_ATPase: AFG1-lik 92.7 0.11 2.4E-06 57.4 4.2 106 191-314 60-168 (362)
464 COG1936 Predicted nucleotide k 92.7 0.084 1.8E-06 50.0 2.7 20 195-214 2-21 (180)
465 cd02024 NRK1 Nicotinamide ribo 92.7 0.069 1.5E-06 52.9 2.3 23 195-217 1-23 (187)
466 KOG0735 AAA+-type ATPase [Post 92.7 5.4 0.00012 46.7 17.1 180 167-372 668-872 (952)
467 CHL00206 ycf2 Ycf2; Provisiona 92.6 0.83 1.8E-05 59.6 11.9 27 192-218 1629-1655(2281)
468 PRK15453 phosphoribulokinase; 92.6 0.51 1.1E-05 49.4 8.5 78 192-272 4-89 (290)
469 cd02023 UMPK Uridine monophosp 92.6 0.072 1.6E-06 54.1 2.3 23 195-217 1-23 (198)
470 PRK00409 recombination and DNA 92.6 0.059 1.3E-06 66.2 2.0 174 193-393 327-523 (782)
471 PRK00131 aroK shikimate kinase 92.6 0.087 1.9E-06 52.3 2.9 24 194-217 5-28 (175)
472 cd01132 F1_ATPase_alpha F1 ATP 92.6 0.27 5.9E-06 51.4 6.5 84 194-282 70-170 (274)
473 PRK06793 fliI flagellum-specif 92.5 0.44 9.6E-06 53.6 8.6 86 194-283 157-256 (432)
474 PRK10463 hydrogenase nickel in 92.5 1.2 2.5E-05 47.3 11.2 28 191-218 102-129 (290)
475 cd03250 ABCC_MRP_domain1 Domai 92.5 1.5 3.2E-05 44.7 11.9 24 194-217 32-55 (204)
476 PF03205 MobB: Molybdopterin g 92.5 0.15 3.3E-06 48.0 4.2 39 194-234 1-39 (140)
477 PF01078 Mg_chelatase: Magnesi 92.5 0.2 4.4E-06 49.8 5.2 42 166-215 3-44 (206)
478 cd03300 ABC_PotA_N PotA is an 92.5 0.67 1.5E-05 48.4 9.6 24 194-217 27-50 (232)
479 PRK10751 molybdopterin-guanine 92.4 0.12 2.5E-06 50.3 3.4 27 192-218 5-31 (173)
480 COG2401 ABC-type ATPase fused 92.4 0.17 3.6E-06 54.6 4.8 51 167-217 372-433 (593)
481 cd02021 GntK Gluconate kinase 92.4 0.082 1.8E-06 50.9 2.4 22 195-216 1-22 (150)
482 TIGR01188 drrA daunorubicin re 92.4 0.78 1.7E-05 50.1 10.3 23 194-216 20-42 (302)
483 PRK05986 cob(I)alamin adenolsy 92.4 0.27 5.8E-06 48.4 5.8 118 194-313 23-158 (191)
484 cd00984 DnaB_C DnaB helicase C 92.4 0.64 1.4E-05 49.0 9.4 53 192-248 12-64 (242)
485 PRK10820 DNA-binding transcrip 92.4 0.3 6.5E-06 57.6 7.5 47 166-216 204-250 (520)
486 PHA02774 E1; Provisional 92.4 0.42 9.1E-06 55.0 8.1 49 175-233 421-469 (613)
487 TIGR03263 guanyl_kin guanylate 92.3 0.099 2.1E-06 52.2 2.9 23 194-216 2-24 (180)
488 cd00227 CPT Chloramphenicol (C 92.3 0.096 2.1E-06 51.9 2.8 24 194-217 3-26 (175)
489 TIGR02655 circ_KaiC circadian 92.3 0.47 1E-05 55.5 8.9 49 191-244 261-309 (484)
490 PF08477 Miro: Miro-like prote 92.3 0.1 2.3E-06 47.7 2.8 23 196-218 2-24 (119)
491 PRK09280 F0F1 ATP synthase sub 92.3 0.5 1.1E-05 53.4 8.6 87 194-282 145-247 (463)
492 cd03233 ABC_PDR_domain1 The pl 92.3 0.75 1.6E-05 46.7 9.4 24 194-217 34-57 (202)
493 KOG2123 Uncharacterized conser 92.3 0.018 3.9E-07 58.2 -2.4 81 573-654 36-123 (388)
494 COG1419 FlhF Flagellar GTP-bin 92.3 0.41 8.9E-06 52.4 7.6 89 193-284 203-292 (407)
495 COG1066 Sms Predicted ATP-depe 92.3 0.38 8.3E-06 52.3 7.2 81 193-283 93-178 (456)
496 COG5635 Predicted NTPase (NACH 92.3 0.15 3.2E-06 63.8 4.9 139 194-336 223-371 (824)
497 PRK14737 gmk guanylate kinase; 92.2 0.13 2.7E-06 51.4 3.5 25 192-216 3-27 (186)
498 COG0467 RAD55 RecA-superfamily 92.2 0.32 7E-06 51.8 6.9 42 191-235 21-62 (260)
499 cd03254 ABCC_Glucan_exporter_l 92.2 0.96 2.1E-05 47.1 10.4 24 194-217 30-53 (229)
500 TIGR03880 KaiC_arch_3 KaiC dom 92.2 1 2.2E-05 46.8 10.4 42 191-235 14-55 (224)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-83 Score=767.39 Aligned_cols=629 Identities=29% Similarity=0.457 Sum_probs=498.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhcccCCccccccccccc
Q 047894 25 LLSFLKKWERKLKMIQAVLNDAEEKQLTDEAVKMWLDDLQDLAYDAEDILDEFATQALESKLMAKNQDSSGQLLSFIPAS 104 (1087)
Q Consensus 25 ~~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1087)
..+++..|+.+|..++++++||++++.....+..|.+.+++++|++||.++.|.......+..+.-. ......+....
T Consensus 26 ~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~-~~~~~~~~~c~- 103 (889)
T KOG4658|consen 26 KDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLS-TRSVERQRLCL- 103 (889)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh-hhHHHHHHHhh-
Confidence 4456999999999999999999999988899999999999999999999999999876653221100 00001111111
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHHhhhhcCccccCCCCCCcccccCCCCCCCCCCCCCccccchhhHHHHHHHHhc
Q 047894 105 LNPNAVRLNYSMRSKINDITSRLEQLCKDRIELGLQRIPEGASSTAAAAHQRPPSSSVPTEPEVFGREEDKAKILDMVLA 184 (1087)
Q Consensus 105 ~~~~~~~~~~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~ 184 (1087)
..+++.....+..+.+++..+.+....++.+......+.. ..+.......+...... ||.+..++++.+.|..
T Consensus 104 -----~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~ 176 (889)
T KOG4658|consen 104 -----CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES-LDPREKVETRPIQSESD-VGLETMLEKLWNRLME 176 (889)
T ss_pred -----hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc-ccchhhcccCCCCcccc-ccHHHHHHHHHHHhcc
Confidence 1345666677777778888888877777765432221110 11111112222233334 9999999999999987
Q ss_pred CCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc-ccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCc--ccHHH
Q 047894 185 DTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA-VRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDL--KTLNE 261 (1087)
Q Consensus 185 ~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~ 261 (1087)
++. .+++|+||||+||||||+.++|+.. ++. +||.++||.||+.++...+..+|++.++.....- ...++
T Consensus 177 d~~------~iv~i~GMGGvGKTTL~~qi~N~~~~v~~-~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~ 249 (889)
T KOG4658|consen 177 DDV------GIVGIYGMGGVGKTTLARQIFNKFDEVGN-HFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDE 249 (889)
T ss_pred CCC------CEEEEECCCcccHHHHHHHHhcccchhcc-cCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHH
Confidence 643 7999999999999999999999998 775 9999999999999999999999999988744322 23478
Q ss_pred HHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccccc-cCCCceeeCCCCChHhHHHHHH
Q 047894 262 VQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVAST-MGPIEHYNLKSLSDDDCWSIFI 340 (1087)
Q Consensus 262 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~ 340 (1087)
++..+.+.|++|||+||+||||++ .+|+.+..+++....||+|++|||++.|+.. +++...+++++|+.+|||++|+
T Consensus 250 ~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~ 327 (889)
T KOG4658|consen 250 LASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQ 327 (889)
T ss_pred HHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHH
Confidence 889999999999999999999998 5799999999999899999999999999988 7777899999999999999999
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCC-CHHHHHHHHhhhccCCCC-----CCChHHHHHhhhc
Q 047894 341 KHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTT-RHDAWDDILESKIWDLPR-----QSGVLPVLRLSYH 414 (1087)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~-~~~~w~~~~~~~~~~~~~-----~~~i~~~l~~sy~ 414 (1087)
+.+|..... .++..+++|++++++|+|+|||++++|+.|+.+ +..+|+++.+...+.... .+.|.+++++||+
T Consensus 328 ~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd 406 (889)
T KOG4658|consen 328 KKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYD 406 (889)
T ss_pred Hhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHh
Confidence 999876433 334489999999999999999999999999999 888999999876555222 4678999999999
Q ss_pred CCchhhHHHHHHHccCCCCcccChhhhHHHhHhCCCcccCCchhhHHHHHHHHHHHHhhCCCCcccccC-CcccEEEcHH
Q 047894 415 HLPSHLKRCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTAIS-DSCKFVMHDL 493 (1087)
Q Consensus 415 ~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~e~~~~~~~~~L~~~~l~~~~~~~-~~~~~~~h~~ 493 (1087)
.||+++|.||+|||+||+||+|+++.|+.+|+|||||.+.+++.+++++|+.|+.+|++++|++..+.. ...+|+|||+
T Consensus 407 ~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDv 486 (889)
T KOG4658|consen 407 NLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDV 486 (889)
T ss_pred hhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHH
Confidence 999999999999999999999999999999999999998777899999999999999999999976532 3467999999
Q ss_pred HHHHHHHhhh-----cceEEeccCCcc----cCCCCCcceEEEEEeccCCccccccccccCCCccEeeeccccCCCCccc
Q 047894 494 IHDLAELVSR-----ETIFRLEESTNL----SSRGFERARHSSYARDWCDGRNKFEVFYEIEHLRTFLPLRIRGGTNTSY 564 (1087)
Q Consensus 494 v~~~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~ 564 (1087)
||++|.++++ ++.+.+...... .......+|++++....... ...-...++++||....+..
T Consensus 487 vRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~------ 557 (889)
T KOG4658|consen 487 VREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD------ 557 (889)
T ss_pred HHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecch------
Confidence 9999999999 565555443111 11223567888887654211 12223456899999877642
Q ss_pred chhhhhhcccCCCCcccEEEecCCC-CcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcc
Q 047894 565 ITRTVLSDLLPKFKRLRMLSLQGYC-IGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPK 643 (1087)
Q Consensus 565 ~~~~~~~~~~~~~~~Lr~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 643 (1087)
....+....|..++.||||||++|. +..+|+.|++|.|||||+++++.|+.||.++++|+.|++||+..+..+..+|..
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch
Confidence 1233445568899999999999875 799999999999999999999999999999999999999999998877777777
Q ss_pred cCCCCCcCEEeecCCccccccCccCCCCCCCCccCeeee
Q 047894 644 MRNLINLNHLDIRGAKLLKEMPCGMKELKKLRTLSNFIV 682 (1087)
Q Consensus 644 i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 682 (1087)
+..|++||+|.+.... .......++.+.+|++|..+.+
T Consensus 638 ~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhhcccccEEEeeccc-cccchhhHHhhhcccchhhhee
Confidence 7779999999997654 1111122444455555544433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.2e-62 Score=615.98 Aligned_cols=701 Identities=21% Similarity=0.307 Sum_probs=486.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEe---CCc------
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCV---SDV------ 235 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~------ 235 (1087)
...+|||+++++++..++.-.. +.+++|+|+||||+||||||+++|+... . +|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~-~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSRLS--R-QFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred cccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHHHh--h-cCCeEEEeeccccccchhhccc
Confidence 4569999999999998885432 5679999999999999999999998743 3 8888888742 111
Q ss_pred -----cc-HHHHHHHHHHHhhcCCC-CcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEE
Q 047894 236 -----FD-VLGISKALLESITSAAS-DLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIV 308 (1087)
Q Consensus 236 -----~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilv 308 (1087)
.+ ...+..+++.++..... ..... ..+++.++++|+||||||||+. ..|+.+.......++||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 00 12334444444433221 11111 3567778999999999999875 678888766655678999999
Q ss_pred EcCCcccccccCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCCCHHHH
Q 047894 309 TTRNSNVASTMGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTTRHDAW 388 (1087)
Q Consensus 309 Ttr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~w 388 (1087)
|||++.++..++..+.|+++.+++++||+||+++||+...+ ++...+++++|+++|+|+|||++++|+.|++++..+|
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W 407 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDW 407 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHH
Confidence 99999998877777899999999999999999999976432 3457889999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCChHHHHHhhhcCCch-hhHHHHHHHccCCCCcccChhhhHHHhHhCCCcccCCchhhHHHHHHHH
Q 047894 389 DDILESKIWDLPRQSGVLPVLRLSYHHLPS-HLKRCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKERLEDWGSKC 467 (1087)
Q Consensus 389 ~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~e~~~~~~ 467 (1087)
..++.+..... +..|..+|++||+.|++ ..|.||+++|+|+.+..++ .+..|+|.+.... +..
T Consensus 408 ~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~ 471 (1153)
T PLN03210 408 MDMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIG 471 (1153)
T ss_pred HHHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhC
Confidence 99998865533 35799999999999987 5999999999999887553 4778888776542 122
Q ss_pred HHHHhhCCCCcccccCCcccEEEcHHHHHHHHHhhhcce-------EEeccCCc----ccCCCCCcceEEEEEeccCCc-
Q 047894 468 FHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELVSRETI-------FRLEESTN----LSSRGFERARHSSYARDWCDG- 535 (1087)
Q Consensus 468 ~~~L~~~~l~~~~~~~~~~~~~~h~~v~~~~~~~~~~~~-------~~~~~~~~----~~~~~~~~~r~ls~~~~~~~~- 535 (1087)
++.|+++||++... +++.|||++|++|++++.++. +.+..... ........++.+++.......
T Consensus 472 l~~L~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 472 LKNLVDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred hHHHHhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 88999999998643 579999999999999987653 11111000 001122445666554322111
Q ss_pred cccccccccCCCccEeeeccccCCCCcccchhhhhhcccCCC-CcccEEEecCCCCcccCccccCCccceeeccCCCcCc
Q 047894 536 RNKFEVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKF-KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIK 614 (1087)
Q Consensus 536 ~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~ 614 (1087)
......|..+.+|+.|.+........ ...... ++..|..+ ..||.|.+.++.+..+|..| ...+|++|+++++.+.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~-~~~~~~-lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQK-KEVRWH-LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eecHHHHhcCccccEEEEeccccccc-ccceee-cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc
Confidence 11234567788888887654321000 000011 12223333 46899999999999999887 5688999999999999
Q ss_pred ccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCCccccccCccCCCCCCCCccCeeeeCccCCCCCcccc
Q 047894 615 SLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDL 694 (1087)
Q Consensus 615 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L 694 (1087)
.+|.++..+++|++|+|++|..+..+|. ++.+++|++|++++|..+..+|..++++++|+.|....+.
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~----------- 692 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE----------- 692 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC-----------
Confidence 9999899999999999998888888885 8889999999999987777778777777666666432110
Q ss_pred ccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCC
Q 047894 695 KCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR 774 (1087)
Q Consensus 695 ~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 774 (1087)
++ ..
T Consensus 693 ---------------------------------~L-------------------------------------------~~ 696 (1153)
T PLN03210 693 ---------------------------------NL-------------------------------------------EI 696 (1153)
T ss_pred ---------------------------------Cc-------------------------------------------Cc
Confidence 00 01
Q ss_pred CCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeecccccccccc
Q 047894 775 FPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHW 854 (1087)
Q Consensus 775 ~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~ 854 (1087)
+|..+ .+++|+.|++++|.....+|.+ .++|+.|+++++. ++.++..+ .+++|..|.+.++.....|
T Consensus 697 Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~-i~~lP~~~-------~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 697 LPTGI---NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA-IEEFPSNL-------RLENLDELILCEMKSEKLW 763 (1153)
T ss_pred cCCcC---CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc-cccccccc-------cccccccccccccchhhcc
Confidence 12211 1567888888888766555532 4578888887753 33332211 2555555555544322222
Q ss_pred ccccccccccccCCcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEecc
Q 047894 855 DTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICN 934 (1087)
Q Consensus 855 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~ 934 (1087)
. .+.. +.......+++|+.|++++|+.+... | ..+.++++|+.|++++
T Consensus 764 ~-~~~~--------------------l~~~~~~~~~sL~~L~Ls~n~~l~~l----P-------~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 764 E-RVQP--------------------LTPLMTMLSPSLTRLFLSDIPSLVEL----P-------SSIQNLHKLEHLEIEN 811 (1153)
T ss_pred c-cccc--------------------cchhhhhccccchheeCCCCCCcccc----C-------hhhhCCCCCCEEECCC
Confidence 1 0000 00000112345555566555432210 0 1234566778888888
Q ss_pred CCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEE
Q 047894 935 STALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLR 1014 (1087)
Q Consensus 935 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~ 1014 (1087)
|..+..+|... ++++|+.|++++|..+..+|. .+ .+|+.|++++|.+.. +|..+..+++|++|+
T Consensus 812 C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~--~~-----------~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 812 CINLETLPTGI--NLESLESLDLSGCSRLRTFPD--IS-----------TNISDLNLSRTGIEE-VPWWIEKFSNLSFLD 875 (1153)
T ss_pred CCCcCeeCCCC--CccccCEEECCCCCccccccc--cc-----------cccCEeECCCCCCcc-ChHHHhcCCCCCEEE
Confidence 87777777654 688888889888887776552 12 356666777777664 566778889999999
Q ss_pred EeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCC
Q 047894 1015 IENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERG 1052 (1087)
Q Consensus 1015 l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~ 1052 (1087)
+++|+.+..+|..+..+++|+.|++++|++|+.++-..
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~ 913 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNG 913 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCcccccccCCC
Confidence 99998888888888889999999999999888776533
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.2e-42 Score=373.72 Aligned_cols=275 Identities=36% Similarity=0.618 Sum_probs=223.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhh
Q 047894 171 REEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESIT 250 (1087)
Q Consensus 171 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 250 (1087)
||.++++|.++|.... .+.++|+|+|+||+||||||.+++++...+. +|+.++|+.++...+...++..|+.++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~-~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKN-RFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCC-CCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccc-cccccccccccccccccccccccccccc
Confidence 7899999999998754 4569999999999999999999999877665 9999999999999999999999999998
Q ss_pred cCCC---CcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccccccCC-Cceee
Q 047894 251 SAAS---DLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVASTMGP-IEHYN 326 (1087)
Q Consensus 251 ~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~~~~~-~~~~~ 326 (1087)
.... ...+.++....+.+.++++++||||||||+. ..|..+...++....|++||||||+..++..++. ...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 8743 4567788999999999999999999999876 5888888877777789999999999998877665 57899
Q ss_pred CCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCC-CHHHHHHHHhhhccCCCC----
Q 047894 327 LKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTT-RHDAWDDILESKIWDLPR---- 401 (1087)
Q Consensus 327 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~-~~~~w~~~~~~~~~~~~~---- 401 (1087)
+++|++++|++||.+.++... ....+..++.+++|+++|+|+|||++++|++|+.+ +..+|..++++..+....
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999997655 22234456688999999999999999999999766 778899988765544322
Q ss_pred CCChHHHHHhhhcCCchhhHHHHHHHccCCCCcccChhhhHHHhHhCCCccc
Q 047894 402 QSGVLPVLRLSYHHLPSHLKRCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQ 453 (1087)
Q Consensus 402 ~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~ 453 (1087)
...+..++.+||+.||+++|+||+|||+||+++.|+++.++++|+|||||..
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 4679999999999999999999999999999999999999999999999986
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.7e-33 Score=354.77 Aligned_cols=498 Identities=18% Similarity=0.179 Sum_probs=276.4
Q ss_pred cceEEEEEeccCCccccccccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCc-ccCccccCC
Q 047894 522 RARHSSYARDWCDGRNKFEVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIG-ELPIPFEEL 600 (1087)
Q Consensus 522 ~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~-~lp~~i~~l 600 (1087)
.++.+.+........ ....+..+++|+.|.+..+.. ...++...+..+++||+|+|++|.+. .+|. +.+
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~-------~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQL-------SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCcc-------CCcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence 455555544322211 123466778888887655432 12333445667888888888888774 3443 567
Q ss_pred ccceeeccCCCcCc-ccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCCccccccCccCCCCCCCCccCe
Q 047894 601 RLLRFLNLADIDIK-SLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKLLKEMPCGMKELKKLRTLSN 679 (1087)
Q Consensus 601 ~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 679 (1087)
.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|+.
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 78888888888876 67888888888888888887766678888888888888888888755567777888888888865
Q ss_pred eeeCcc-CCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCC
Q 047894 680 FIVGKR-ETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQP 758 (1087)
Q Consensus 680 ~~~~~~-~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 758 (1087)
..+... ..+..+..+++|+.|. +.. +......+..+.++.+|+.|++.++...... ...+..
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~--L~~------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~---------p~~l~~ 282 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLD--LVY------NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI---------PPSIFS 282 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEE--CcC------ceeccccChhHhCCCCCCEEECcCCeeeccC---------chhHhh
Confidence 544322 1122344444444431 111 1112233445666777777777655432211 122334
Q ss_pred CCCcccEEEeccCCC-CCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeeccccccCCcccC
Q 047894 759 HKCIKKVAIRNYGGA-RFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 836 (1087)
Q Consensus 759 ~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 836 (1087)
..+|+.|.++++... .+|.++.. +++|+.|++++|.....+| .++.+++|+.|+++++.....++..+ ..
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l------~~ 354 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQ--LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL------GK 354 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcC--CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH------hC
Confidence 456777777665433 45666654 6777777777777665555 56777777777777664333332222 22
Q ss_pred CCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCC---CCCCccEEEEeecCCccccCCCCCcc
Q 047894 837 FPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPE---LLPSLETLVVSKCGKLVVPLSCYPML 913 (1087)
Q Consensus 837 fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~~~~~~~~~~~L 913 (1087)
+++|+.|++++.......... ...+++|+.|.+.+| ++.+.+|. .+++|+.|++.+|.-..
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~------~~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~L~~L~L~~n~l~~--------- 418 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEG------LCSSGNLFKLILFSN-SLEGEIPKSLGACRSLRRVRLQDNSFSG--------- 418 (968)
T ss_pred CCCCcEEECCCCeeEeeCChh------HhCcCCCCEEECcCC-EecccCCHHHhCCCCCCEEECcCCEeee---------
Confidence 566677766654321111100 112456677777666 44445553 35666777766653111
Q ss_pred cEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEE-------------EE
Q 047894 914 CRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRL-------------EI 980 (1087)
Q Consensus 914 ~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L-------------~l 980 (1087)
.....+.++++|+.|++++|.+.+..+..+ ..+++|+.|++++|.....+|...-..+|+.| .+
T Consensus 419 --~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 419 --ELPSEFTKLPLVYFLDISNNNLQGRINSRK-WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred --ECChhHhcCCCCCEEECcCCcccCccChhh-ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhh
Confidence 001122334444555555554444443332 23445555555554433222211000111111 12
Q ss_pred ecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCC-CCCCCcCe
Q 047894 981 ENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPER-GLPNTISA 1059 (1087)
Q Consensus 981 ~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~ 1059 (1087)
.++++|+.|++++|++.+..|..+..+++|++|+|++|.+.+.+|..+.++++|++|++++|.....+|.. ...++|+.
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 33445555666666666656655656666666666666666566666666666666666665544445541 22345666
Q ss_pred EEEccCCCCCCCCC
Q 047894 1060 VYICECDKLEAPPN 1073 (1087)
Q Consensus 1060 L~i~~c~~l~~~p~ 1073 (1087)
|+|++|+....+|.
T Consensus 576 l~ls~N~l~~~~p~ 589 (968)
T PLN00113 576 VNISHNHLHGSLPS 589 (968)
T ss_pred EeccCCcceeeCCC
Confidence 66666655555553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.2e-31 Score=343.31 Aligned_cols=475 Identities=20% Similarity=0.222 Sum_probs=342.4
Q ss_pred cccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCc-ccCccccCCccceeeccCCCcCc-ccccc
Q 047894 542 FYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIG-ELPIPFEELRLLRFLNLADIDIK-SLPES 619 (1087)
Q Consensus 542 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~ 619 (1087)
+..+++||.|.+.++.. ...+ + ...+++|++|+|++|.+. .+|..++++.+|++|++++|.+. .+|..
T Consensus 114 ~~~l~~L~~L~Ls~n~l-------~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNF-------TGSI-P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred hccCCCCCEEECcCCcc-------cccc-C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 34778888887654432 1111 1 135788999999999885 67888999999999999999876 77889
Q ss_pred cccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCCccccccCccCCCCCCCCccCeeeeCcc-CCCCCcccccccc
Q 047894 620 TCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKLLKEMPCGMKELKKLRTLSNFIVGKR-ETASGLEDLKCLN 698 (1087)
Q Consensus 620 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~-~~~~~~~~L~~L~ 698 (1087)
++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|+...+... ..+..+..+++|+
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 999999999999998877788999999999999999998855678888999999999876554332 1233455555555
Q ss_pred ccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCC-CCCC
Q 047894 699 FLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-RFPL 777 (1087)
Q Consensus 699 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~ 777 (1087)
.|. +.. +...+..+..+..+.+|+.|+++++..... ....+...++|+.|.+.++... ..|.
T Consensus 264 ~L~--L~~------n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---------~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 264 YLF--LYQ------NKLSGPIPPSIFSLQKLISLDLSDNSLSGE---------IPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred EEE--CcC------CeeeccCchhHhhccCcCEEECcCCeeccC---------CChhHcCCCCCcEEECCCCccCCcCCh
Confidence 542 111 112223344566778899999986653321 1223455678888888876543 4566
Q ss_pred CcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeecccccccccccc
Q 047894 778 WIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDT 856 (1087)
Q Consensus 778 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~ 856 (1087)
++.. +++|+.|++++|.....+| .++.+++|+.|+++++.....++..+.. +++|+.+.+.+.........
T Consensus 327 ~~~~--l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~------~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 327 ALTS--LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS------SGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred hHhc--CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC------cCCCCEEECcCCEecccCCH
Confidence 6655 8899999999998877777 6888999999999887544444333322 56677777765432111110
Q ss_pred ccccccccccCCcccEEEEecCCCccccCCC---CCCCccEEEEeecCCcc---ccCCCCCcccEEEeccCC--------
Q 047894 857 DIKGNVHVEIFPRLHKLSIVECPKLSGELPE---LLPSLETLVVSKCGKLV---VPLSCYPMLCRLEVDECK-------- 922 (1087)
Q Consensus 857 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~~~---~~~~~~~~L~~l~~~~~~-------- 922 (1087)
. ...+++|+.|.+.+| .+.+.+|. .++.|+.|++++|.-.. .....+++|+.+.+..+.
T Consensus 399 ~------~~~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 399 S------LGACRSLRRVRLQDN-SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred H------HhCCCCCCEEECcCC-EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc
Confidence 0 134677788887777 55555553 45677777777763221 112345666666665443
Q ss_pred -CcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCC
Q 047894 923 -ELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSP 1001 (1087)
Q Consensus 923 -~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~ 1001 (1087)
..++|+.|++++|.+....|..+ ..+++|+.|++++|.....+|. .+.+|++|+.|++++|.+++..|
T Consensus 472 ~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~----------~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 472 FGSKRLENLDLSRNQFSGAVPRKL-GSLSELMQLKLSENKLSGEIPD----------ELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred cccccceEEECcCCccCCccChhh-hhhhccCEEECcCCcceeeCCh----------HHcCccCCCEEECCCCcccccCC
Confidence 23589999999999888888765 5789999999999875444442 36678899999999999999999
Q ss_pred CCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCcCeEEEccCCCCC
Q 047894 1002 SSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTISAVYICECDKLE 1069 (1087)
Q Consensus 1002 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~ 1069 (1087)
..+..+++|+.|++++|++.+.+|..+.++++|+.|++++|+....+|..+.+.++....+.+|+.+.
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLC 608 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcccc
Confidence 99999999999999999999999999999999999999999888889987766667666777776554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.1e-24 Score=227.75 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=46.7
Q ss_pred cccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccC---CCCCCCCCccEEEEecCCCCcccCCCCC--CCC
Q 047894 982 NCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIP---DGLPNLKCLQSICIRKCPSLVSFPERGL--PNT 1056 (1087)
Q Consensus 982 ~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~s 1056 (1087)
.+..|++|.++.|+++......|.++.+|++|++++|.+...+- .-+..+++|+.|++.+ ++++++|+..| +++
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEA 417 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcc
Confidence 33444444445544444444444445555555555554443321 1234455555555555 44555554222 234
Q ss_pred cCeEEEccCCCCCCCCCCCCCCCCCCcEE
Q 047894 1057 ISAVYICECDKLEAPPNDMHKLNSLQSLS 1085 (1087)
Q Consensus 1057 L~~L~i~~c~~l~~~p~~l~~l~~L~~l~ 1085 (1087)
|++|++.+|+.-+.-|+.|... .|++|.
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhhh
Confidence 5555555555444444444444 444443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=8.4e-25 Score=222.98 Aligned_cols=265 Identities=24% Similarity=0.267 Sum_probs=136.1
Q ss_pred hccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCcceeeccCCCCceeeccccccCCc
Q 047894 754 DILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHLAVKGLKKLKSIESEVYGEGF 833 (1087)
Q Consensus 754 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 833 (1087)
+.++..+++..|+++.+...++|..+.- +.+|..|++++|.+..-.+.+|++ .|+.|.+.+++ ++.+..+....+.
T Consensus 246 e~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT 321 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGT 321 (565)
T ss_pred HHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccH
Confidence 3445566777788888888888887764 778999999988876555588888 88888888754 2222222111100
Q ss_pred ccCCCCccEeec----ccccccccccccccccccccc------CCcccEEEEecCCCccccCCCC-C-----CCccEEEE
Q 047894 834 SMPFPSLEILSF----ENLAEWEHWDTDIKGNVHVEI------FPRLHKLSIVECPKLSGELPEL-L-----PSLETLVV 897 (1087)
Q Consensus 834 ~~~fp~L~~L~l----~~l~~l~~~~~~~~~~~~~~~------~~~L~~L~l~~c~~l~~~~p~~-l-----~~L~~L~l 897 (1087)
.. -||+|.- .++..-+.- ..-....+... +-+.+.|.+++- +++ .+|.. + .-....++
T Consensus 322 ~~---vLKyLrs~~~~dglS~se~~-~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt-~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 322 QE---VLKYLRSKIKDDGLSQSEGG-TETAMTLPSESFPDIYAIITTKILDVSDK-QLT-LVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HH---HHHHHHHhhccCCCCCCccc-ccccCCCCCCcccchhhhhhhhhhccccc-ccc-cCCHHHHHHhhhcceEEEec
Confidence 00 0010000 000000000 00000000111 123344444333 232 33311 0 01223333
Q ss_pred eecCCcccc-------------CCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCc
Q 047894 898 SKCGKLVVP-------------LSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLT 964 (1087)
Q Consensus 898 ~~~~~~~~~-------------~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 964 (1087)
+.|.-.+.+ ....+.+.+.. -....+++|..|++++|. +..+|..++ .+..|+.|+++.|. ..
T Consensus 396 skNqL~elPk~L~~lkelvT~l~lsnn~isfv~-~~l~~l~kLt~L~L~NN~-Ln~LP~e~~-~lv~Lq~LnlS~Nr-Fr 471 (565)
T KOG0472|consen 396 SKNQLCELPKRLVELKELVTDLVLSNNKISFVP-LELSQLQKLTFLDLSNNL-LNDLPEEMG-SLVRLQTLNLSFNR-FR 471 (565)
T ss_pred ccchHhhhhhhhHHHHHHHHHHHhhcCccccch-HHHHhhhcceeeecccch-hhhcchhhh-hhhhhheecccccc-cc
Confidence 333111110 00111111111 112345677777887776 456777763 57778888888773 22
Q ss_pred ccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCC
Q 047894 965 FIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCP 1043 (1087)
Q Consensus 965 ~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~ 1043 (1087)
.+|. .+.....++.+-.++|++....+..+.++.+|..||+.+|.+. .+|+.++++++|++|+++++|
T Consensus 472 -----~lP~-----~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 472 -----MLPE-----CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -----cchH-----HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCc
Confidence 2221 1112233444445567777766666777888888888888664 667788888888888888865
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.6e-19 Score=230.58 Aligned_cols=349 Identities=24% Similarity=0.349 Sum_probs=232.1
Q ss_pred hcccCCCCcccEEEecCCCC-------cccCccccCCc-cceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCc
Q 047894 571 SDLLPKFKRLRMLSLQGYCI-------GELPIPFEELR-LLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPP 642 (1087)
Q Consensus 571 ~~~~~~~~~Lr~L~l~~~~i-------~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 642 (1087)
..+|.++.+|+.|.+..+.. ..+|..+..++ .||+|++.++.++.+|..+ ...+|+.|++++|. +..+|.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~ 628 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWD 628 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-cccccc
Confidence 44567777777777754421 23566665553 4777777777777777766 46777777777754 666777
Q ss_pred ccCCCCCcCEEeecCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHh
Q 047894 643 KMRNLINLNHLDIRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAA 722 (1087)
Q Consensus 643 ~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 722 (1087)
.+..+++|+.|++++|..+..+|. ++.+++|++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~---------------------------------------------- 661 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET---------------------------------------------- 661 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccE----------------------------------------------
Confidence 777777777777776654444442 333333333
Q ss_pred ccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC
Q 047894 723 LCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP 802 (1087)
Q Consensus 723 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 802 (1087)
|.+..+.. ...+|..+.. +++|+.|++++|.....+|
T Consensus 662 ---------L~L~~c~~--------------------------------L~~lp~si~~--L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 662 ---------LKLSDCSS--------------------------------LVELPSSIQY--LNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred ---------EEecCCCC--------------------------------ccccchhhhc--cCCCCEEeCCCCCCcCccC
Confidence 33322110 1123333333 6777788888777666676
Q ss_pred CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCcc
Q 047894 803 SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLS 882 (1087)
Q Consensus 803 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 882 (1087)
.-.++++|+.|++++|..++. || ...++|+.|++.++ .+.
T Consensus 699 ~~i~l~sL~~L~Lsgc~~L~~-------------~p--------------------------~~~~nL~~L~L~~n-~i~ 738 (1153)
T PLN03210 699 TGINLKSLYRLNLSGCSRLKS-------------FP--------------------------DISTNISWLDLDET-AIE 738 (1153)
T ss_pred CcCCCCCCCEEeCCCCCCccc-------------cc--------------------------cccCCcCeeecCCC-ccc
Confidence 544677777777776643322 11 01346677777766 454
Q ss_pred ccCCC--CCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccC
Q 047894 883 GELPE--LLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDC 960 (1087)
Q Consensus 883 ~~~p~--~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c 960 (1087)
.+|. .+++|++|.+.+|...... .....+.. ......++|+.|++++|+....+|..+ .++++|+.|++++|
T Consensus 739 -~lP~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~---~~~~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 739 -EFPSNLRLENLDELILCEMKSEKLW-ERVQPLTP---LMTMLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENC 812 (1153)
T ss_pred -cccccccccccccccccccchhhcc-ccccccch---hhhhccccchheeCCCCCCccccChhh-hCCCCCCEEECCCC
Confidence 5554 3678888888775432110 00000100 011224689999999999888899885 68999999999999
Q ss_pred CCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEe
Q 047894 961 ESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIR 1040 (1087)
Q Consensus 961 ~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 1040 (1087)
..++.+|....+++|+.|.+++|.+|+.+ |. .+++|++|++++|.+. .+|.++..+++|+.|+++
T Consensus 813 ~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~-----------p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 813 INLETLPTGINLESLESLDLSGCSRLRTF-----------PD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMN 877 (1153)
T ss_pred CCcCeeCCCCCccccCEEECCCCCccccc-----------cc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECC
Confidence 99998887655678888888888877654 21 2467999999999775 778899999999999999
Q ss_pred cCCCCcccCCC-CCCCCcCeEEEccCCCCCCCC
Q 047894 1041 KCPSLVSFPER-GLPNTISAVYICECDKLEAPP 1072 (1087)
Q Consensus 1041 ~c~~l~~lp~~-~~~~sL~~L~i~~c~~l~~~p 1072 (1087)
+|++++.+|.. ...++|+.|++++|+.+..++
T Consensus 878 ~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 878 GCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 99999999873 334689999999999887543
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=3e-23 Score=233.70 Aligned_cols=99 Identities=32% Similarity=0.420 Sum_probs=86.3
Q ss_pred CCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeec
Q 047894 577 FKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIR 656 (1087)
Q Consensus 577 ~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 656 (1087)
.-.|++||+++|.+..+|..|..+.+|+.|+++.|.|...|.+++++.+|++|+|.+|. +..+|.++..+++|++|+++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccc
Confidence 33499999999999999999999999999999999999999999999999999999754 89999999999999999999
Q ss_pred CCccccccCccCCCCCCCCcc
Q 047894 657 GAKLLKEMPCGMKELKKLRTL 677 (1087)
Q Consensus 657 ~~~~~~~~p~~i~~L~~L~~L 677 (1087)
+|. +..+|.-+..++.+..+
T Consensus 123 ~N~-f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 123 FNH-FGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred hhc-cCCCchhHHhhhHHHHH
Confidence 998 56677666555554444
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.5e-21 Score=208.30 Aligned_cols=363 Identities=18% Similarity=0.171 Sum_probs=238.8
Q ss_pred CcccEEEecCCCCccc-CccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCccc-CcccCCCCCcCEEee
Q 047894 578 KRLRMLSLQGYCIGEL-PIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKL-PPKMRNLINLNHLDI 655 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 655 (1087)
..-+.||+++|.+..+ +..|.++++|+.+++..|.++.+|....-..||+.|+|.+|. +.++ .+.+..++.||.||+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhh
Confidence 3556788988888766 566888889999999988888888877778889999998876 4433 445778888899999
Q ss_pred cCCccccccCcc-CCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEE
Q 047894 656 RGAKLLKEMPCG-MKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTL 734 (1087)
Q Consensus 656 ~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 734 (1087)
+.|. +..+|.. +.+-. ++++|.|
T Consensus 157 SrN~-is~i~~~sfp~~~-------------------------------------------------------ni~~L~L 180 (873)
T KOG4194|consen 157 SRNL-ISEIPKPSFPAKV-------------------------------------------------------NIKKLNL 180 (873)
T ss_pred hhch-hhcccCCCCCCCC-------------------------------------------------------CceEEee
Confidence 8887 5555531 22212 3334444
Q ss_pred EeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCC-CCCCCCCcCCccee
Q 047894 735 DWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCV-SLPSLGRLSSLKHL 813 (1087)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L 813 (1087)
.++..++- ....+....+|..|.++.+....+|..... .+++|+.|+|..|.+-. ..-.|.+|++|+.|
T Consensus 181 a~N~It~l---------~~~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 181 ASNRITTL---------ETGHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred cccccccc---------ccccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 33322110 011222333555666666666666654321 37788888888887632 23367888888888
Q ss_pred eccCCCCceeeccccccCCcccCCCCccEeeccccccccccc-cccccccccccCCcccEEEEecCCCccccCC---CCC
Q 047894 814 AVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWD-TDIKGNVHVEIFPRLHKLSIVECPKLSGELP---ELL 889 (1087)
Q Consensus 814 ~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l 889 (1087)
.+..+..-+--+..|++ +.+++.|+++... +.... ..+. .+.+|+.|+++++ .+....+ .+.
T Consensus 251 klqrN~I~kL~DG~Fy~------l~kme~l~L~~N~-l~~vn~g~lf------gLt~L~~L~lS~N-aI~rih~d~Wsft 316 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYG------LEKMEHLNLETNR-LQAVNEGWLF------GLTSLEQLDLSYN-AIQRIHIDSWSFT 316 (873)
T ss_pred hhhhcCcccccCcceee------ecccceeecccch-hhhhhccccc------ccchhhhhccchh-hhheeecchhhhc
Confidence 88876443333334444 6667777765422 11111 0011 2567888888877 4442222 245
Q ss_pred CCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccC
Q 047894 890 PSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARR 969 (1087)
Q Consensus 890 ~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 969 (1087)
+.|++|++++| .++.++-..+..|..|++|++++|.+ ..+.+..+..+++|++||++.|..--.+.++
T Consensus 317 qkL~~LdLs~N-----------~i~~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 317 QKLKELDLSSN-----------RITRLDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred ccceeEecccc-----------ccccCChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 67888888765 45555556677778888888888884 4555555667888888888887633223332
Q ss_pred CCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEec
Q 047894 970 RLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRK 1041 (1087)
Q Consensus 970 ~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 1041 (1087)
..+ +.++++|+.|.+.+|++..+.-.+|.++++|++|++.+|.+...-|..|..+ .|++|-+..
T Consensus 385 a~~-------f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 385 AVA-------FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhh-------hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 222 5667888888888888888777888888889999999888887667777777 888887765
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=9.4e-24 Score=215.38 Aligned_cols=423 Identities=21% Similarity=0.254 Sum_probs=244.7
Q ss_pred ccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCE
Q 047894 573 LLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNH 652 (1087)
Q Consensus 573 ~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 652 (1087)
-+.++..+.||++++|.+.++|.+++.+..+..|+.++|++.++|+.++.+.+|..|+.++|. ..++|++++.+..|..
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLED 141 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhh
Confidence 366778888888888888888888888888888888888888888888888888888888865 7778888888888888
Q ss_pred EeecCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCee
Q 047894 653 LDIRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEAL 732 (1087)
Q Consensus 653 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 732 (1087)
|+..+|+ +..+|.+++.+.+|..+......... .+....+++.|++|
T Consensus 142 l~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~--------------------------------l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 142 LDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKA--------------------------------LPENHIAMKRLKHL 188 (565)
T ss_pred hhccccc-cccCchHHHHHHHHHHhhccccchhh--------------------------------CCHHHHHHHHHHhc
Confidence 8888877 67788888777776666432211100 00011113334444
Q ss_pred EEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCcce
Q 047894 733 TLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKH 812 (1087)
Q Consensus 733 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 812 (1087)
+.. .+....+|..++. +..|..|++..|.+ ..+|.|+.+..|++
T Consensus 189 d~~---------------------------------~N~L~tlP~~lg~--l~~L~~LyL~~Nki-~~lPef~gcs~L~E 232 (565)
T KOG0472|consen 189 DCN---------------------------------SNLLETLPPELGG--LESLELLYLRRNKI-RFLPEFPGCSLLKE 232 (565)
T ss_pred ccc---------------------------------hhhhhcCChhhcc--hhhhHHHHhhhccc-ccCCCCCccHHHHH
Confidence 332 2223345555554 66777777777765 34667777777777
Q ss_pred eeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCCC--
Q 047894 813 LAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLP-- 890 (1087)
Q Consensus 813 L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~-- 890 (1087)
|.+.. +.++.++.+.... ++++..|++.+-+ +.+...+ .-.+.+|.+|+++++ .++ .+|..+.
T Consensus 233 lh~g~-N~i~~lpae~~~~-----L~~l~vLDLRdNk-lke~Pde------~clLrsL~rLDlSNN-~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 233 LHVGE-NQIEMLPAEHLKH-----LNSLLVLDLRDNK-LKEVPDE------ICLLRSLERLDLSNN-DIS-SLPYSLGNL 297 (565)
T ss_pred HHhcc-cHHHhhHHHHhcc-----cccceeeeccccc-cccCchH------HHHhhhhhhhcccCC-ccc-cCCcccccc
Confidence 77654 3444444443322 6666777666532 2211100 112567889999887 666 6665555
Q ss_pred CccEEEEeecCCcccc-----C-------------------------CCCCcccEEEeccCCCcCCccEEEeccCCCCCC
Q 047894 891 SLETLVVSKCGKLVVP-----L-------------------------SCYPMLCRLEVDECKELANLRSLLICNSTALKS 940 (1087)
Q Consensus 891 ~L~~L~l~~~~~~~~~-----~-------------------------~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~ 940 (1087)
+|+.|.+.++|--..- . ..-+.+..........+.+.+.|++++-+ ++.
T Consensus 298 hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~ 376 (565)
T KOG0472|consen 298 HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTL 376 (565)
T ss_pred eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-ccc
Confidence 4566667776432110 0 00000000111111223366777777666 345
Q ss_pred CchhhhcCCC--CCceEEeccCCCCcccccCCCCC---------------CCCEEEEecccCccccccccCCCCCCCCCC
Q 047894 941 LPEEMMENNS--QLEKLYIRDCESLTFIARRRLPA---------------SLKRLEIENCEKLQRLFDDEGDASSSSPSS 1003 (1087)
Q Consensus 941 ~~~~~~~~l~--~L~~L~l~~c~~l~~~~~~~l~~---------------~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~ 1003 (1087)
+|.+.|..-. -....+++.|.. ..+|.. ++. +.--+.++..++|..|++++|-+.. .|..
T Consensus 377 VPdEVfea~~~~~Vt~VnfskNqL-~elPk~-L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e 453 (565)
T KOG0472|consen 377 VPDEVFEAAKSEIVTSVNFSKNQL-CELPKR-LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEE 453 (565)
T ss_pred CCHHHHHHhhhcceEEEecccchH-hhhhhh-hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchh
Confidence 6655443222 145566666542 212210 000 0000133344566666666554333 4555
Q ss_pred CCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCC--CCCCcCeEEEccCCCCCCCCCCCCCCCCC
Q 047894 1004 SSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERG--LPNTISAVYICECDKLEAPPNDMHKLNSL 1081 (1087)
Q Consensus 1004 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~i~~c~~l~~~p~~l~~l~~L 1081 (1087)
++.+..|+.|+|+.|++- .+|..+.-+..|+.+-.++ +++.+++..+ ....|..|++.+| .+..+|..+.++++|
T Consensus 454 ~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL 530 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNL 530 (565)
T ss_pred hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCC-chhhCChhhccccce
Confidence 566666666666666553 4455554444444444443 4555555532 2356777777655 466677778888888
Q ss_pred CcEEeC
Q 047894 1082 QSLSIK 1087 (1087)
Q Consensus 1082 ~~l~i~ 1087 (1087)
+.|+++
T Consensus 531 ~hLeL~ 536 (565)
T KOG0472|consen 531 RHLELD 536 (565)
T ss_pred eEEEec
Confidence 877763
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=3.8e-22 Score=213.81 Aligned_cols=363 Identities=23% Similarity=0.320 Sum_probs=200.8
Q ss_pred CcccEEEecCCCC--cccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEee
Q 047894 578 KRLRMLSLQGYCI--GELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDI 655 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i--~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 655 (1087)
+..|-.|+++|.+ ..+|.++..+..++.|.|..+++..+|+.++.|.+|+.|.+++|. +..+...++.|+.||.+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHHhh
Confidence 3445555555554 345666666666666666666666666666666666666666644 4444445555566666655
Q ss_pred cCCccc--cccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeE
Q 047894 656 RGAKLL--KEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALT 733 (1087)
Q Consensus 656 ~~~~~~--~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 733 (1087)
..|+ + ..+|..|-+|..|.+|+.......
T Consensus 86 R~N~-LKnsGiP~diF~l~dLt~lDLShNqL~------------------------------------------------ 116 (1255)
T KOG0444|consen 86 RDNN-LKNSGIPTDIFRLKDLTILDLSHNQLR------------------------------------------------ 116 (1255)
T ss_pred hccc-cccCCCCchhcccccceeeecchhhhh------------------------------------------------
Confidence 5554 2 234444444444444432211000
Q ss_pred EEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCccee
Q 047894 734 LDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHL 813 (1087)
Q Consensus 734 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 813 (1087)
++...|...+++-.|+++++.+..+|..+.- .+..|-.|+|++|....-.|....|.+|++|
T Consensus 117 -----------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 117 -----------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred -----------------hcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 0001111112222333333333444433221 1344555566655543333345555666666
Q ss_pred eccCCCCceeeccccccCCcccCCCCc---cEeeccccc-cccccccccccccccccCCcccEEEEecCCCccccCCC--
Q 047894 814 AVKGLKKLKSIESEVYGEGFSMPFPSL---EILSFENLA-EWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPE-- 887 (1087)
Q Consensus 814 ~L~~~~~l~~~~~~~~~~~~~~~fp~L---~~L~l~~l~-~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-- 887 (1087)
+|++++..- |. ...+|++ +.|++++.. .+..+.+++ ..+.+|..++++.+ ++. .+|.
T Consensus 179 ~Ls~NPL~h-----fQ----LrQLPsmtsL~vLhms~TqRTl~N~Ptsl------d~l~NL~dvDlS~N-~Lp-~vPecl 241 (1255)
T KOG0444|consen 179 KLSNNPLNH-----FQ----LRQLPSMTSLSVLHMSNTQRTLDNIPTSL------DDLHNLRDVDLSEN-NLP-IVPECL 241 (1255)
T ss_pred hcCCChhhH-----HH----HhcCccchhhhhhhcccccchhhcCCCch------hhhhhhhhcccccc-CCC-cchHHH
Confidence 665543210 00 0113322 223332211 011111112 23678888888776 665 5663
Q ss_pred -CCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCccc
Q 047894 888 -LLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFI 966 (1087)
Q Consensus 888 -~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 966 (1087)
.+++|+.|++++|. ++.+.. ......+|++|++++|+ +..+|..+ ..++.|+.|++.+|+ +..
T Consensus 242 y~l~~LrrLNLS~N~-----------iteL~~-~~~~W~~lEtLNlSrNQ-Lt~LP~av-cKL~kL~kLy~n~Nk-L~F- 305 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNK-----------ITELNM-TEGEWENLETLNLSRNQ-LTVLPDAV-CKLTKLTKLYANNNK-LTF- 305 (1255)
T ss_pred hhhhhhheeccCcCc-----------eeeeec-cHHHHhhhhhhccccch-hccchHHH-hhhHHHHHHHhccCc-ccc-
Confidence 57788888888863 222221 11234588889999998 45678776 478889988888765 321
Q ss_pred ccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCc
Q 047894 967 ARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLV 1046 (1087)
Q Consensus 967 ~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~ 1046 (1087)
.++|+ -|..+.+|+.+...+|.+.- +|..++.|+.|+.|.++.|++. .+|+.+.-++-|+.||+.++|+|.
T Consensus 306 --eGiPS-----GIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 306 --EGIPS-----GIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred --cCCcc-----chhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 24555 45666778888777775554 6777888888888888888765 678888888888888888888887
Q ss_pred ccCC
Q 047894 1047 SFPE 1050 (1087)
Q Consensus 1047 ~lp~ 1050 (1087)
-=|+
T Consensus 377 MPPK 380 (1255)
T KOG0444|consen 377 MPPK 380 (1255)
T ss_pred CCCC
Confidence 5554
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=2.6e-21 Score=207.57 Aligned_cols=334 Identities=20% Similarity=0.238 Sum_probs=188.3
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCc--ccccccccCCCCcEEEecCCCCCcccCcccCCCCCcC
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIK--SLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLN 651 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 651 (1087)
+..+.+|..|.+.+|++..+-..+..|+.||.+.++.|+++ .+|..|.++..|.+|||++|. +.+.|..+.+-+++-
T Consensus 51 L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSI 129 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcE
Confidence 44445555555555555444444445555555555555443 345555555555555555543 455555555555555
Q ss_pred EEeecCCccccccCcc-CCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCC
Q 047894 652 HLDIRGAKLLKEMPCG-MKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLE 730 (1087)
Q Consensus 652 ~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 730 (1087)
.|++++|+ +..+|.. +-+|+.|-.|+... +.-+..+.....+.+|+
T Consensus 130 VLNLS~N~-IetIPn~lfinLtDLLfLDLS~--------------------------------NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 130 VLNLSYNN-IETIPNSLFINLTDLLFLDLSN--------------------------------NRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred EEEcccCc-cccCCchHHHhhHhHhhhcccc--------------------------------chhhhcCHHHHHHhhhh
Confidence 55555554 4444433 22333333332221 12233344455566777
Q ss_pred eeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccC--CCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcC
Q 047894 731 ALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYG--GARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLS 808 (1087)
Q Consensus 731 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 808 (1087)
+|.|+.+... .-.+..|.....|+.|.+++.. ...+|..+.+ +.||..++++.|........+.+++
T Consensus 177 tL~Ls~NPL~---------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~--l~NL~dvDlS~N~Lp~vPecly~l~ 245 (1255)
T KOG0444|consen 177 TLKLSNNPLN---------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD--LHNLRDVDLSENNLPIVPECLYKLR 245 (1255)
T ss_pred hhhcCCChhh---------HHHHhcCccchhhhhhhcccccchhhcCCCchhh--hhhhhhccccccCCCcchHHHhhhh
Confidence 7777654321 1123334445556666666543 2346666654 7777777777766533222667777
Q ss_pred CcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCC
Q 047894 809 SLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPEL 888 (1087)
Q Consensus 809 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~ 888 (1087)
+|+.|+|+++. ++ .|++ . .+.+.+|++|+++.+ .++ .+|..
T Consensus 246 ~LrrLNLS~N~-it-------------------eL~~------------~-----~~~W~~lEtLNlSrN-QLt-~LP~a 286 (1255)
T KOG0444|consen 246 NLRRLNLSGNK-IT-------------------ELNM------------T-----EGEWENLETLNLSRN-QLT-VLPDA 286 (1255)
T ss_pred hhheeccCcCc-ee-------------------eeec------------c-----HHHHhhhhhhccccc-hhc-cchHH
Confidence 77777776642 11 1111 0 122456777777766 555 44432
Q ss_pred CCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCC-CCchhhhcCCCCCceEEeccCCCCcccc
Q 047894 889 LPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALK-SLPEEMMENNSQLEKLYIRDCESLTFIA 967 (1087)
Q Consensus 889 l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 967 (1087)
...+++|+.|...+|++.- -+|+.+ +.+..|+.+...+|. ++..|
T Consensus 287 --------------------------------vcKL~kL~kLy~n~NkL~FeGiPSGI-GKL~~Levf~aanN~-LElVP 332 (1255)
T KOG0444|consen 287 --------------------------------VCKLTKLTKLYANNNKLTFEGIPSGI-GKLIQLEVFHAANNK-LELVP 332 (1255)
T ss_pred --------------------------------HhhhHHHHHHHhccCcccccCCccch-hhhhhhHHHHhhccc-cccCc
Confidence 2234455555555555432 256655 578888888888654 66666
Q ss_pred cCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccE
Q 047894 968 RRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQS 1036 (1087)
Q Consensus 968 ~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 1036 (1087)
+ .+.+|.+|+.|.++.|++.+ .|..+..++.|+.|++++|+.+...|+--..-++|+.
T Consensus 333 E----------glcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lef 390 (1255)
T KOG0444|consen 333 E----------GLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEF 390 (1255)
T ss_pred h----------hhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCCCcchhhhccee
Confidence 5 47889999999999998887 5888899999999999999999777643222244443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-20 Score=212.63 Aligned_cols=388 Identities=23% Similarity=0.257 Sum_probs=208.7
Q ss_pred CCcccEEEecCCCCcccC-ccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEee
Q 047894 577 FKRLRMLSLQGYCIGELP-IPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDI 655 (1087)
Q Consensus 577 ~~~Lr~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 655 (1087)
...+..|.+..|.+-..| +.+.+..+|+.|++++|.+..+|..|..+.+|+.|+++.|. +..+|..+.++.+|++|.|
T Consensus 20 ~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 20 NEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhhee
Confidence 344788888888765544 33455667999999999999999999999999999999854 8999999999999999999
Q ss_pred cCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEE
Q 047894 656 RGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLD 735 (1087)
Q Consensus 656 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 735 (1087)
.+|. +..+|.++..+++|+.|+.........+..+..+..+..+. -..+ .....++... ++.+++.
T Consensus 99 ~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~---------~s~N---~~~~~lg~~~-ik~~~l~ 164 (1081)
T KOG0618|consen 99 KNNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELA---------ASNN---EKIQRLGQTS-IKKLDLR 164 (1081)
T ss_pred ccch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHh---------hhcc---hhhhhhcccc-chhhhhh
Confidence 9988 88999999999999999876665544444444444433321 0000 0011111111 2222222
Q ss_pred eeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCccc-EEeeeCCCCCCCCCCCCCcCCcceee
Q 047894 736 WVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIE-LLELENCDNCVSLPSLGRLSSLKHLA 814 (1087)
Q Consensus 736 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~-~L~L~~~~~~~~l~~l~~l~~L~~L~ 814 (1087)
.+.. +..++..+ .+++ .|+|++|.+. .-.+..+++|+.|.
T Consensus 165 ~n~l--------------------------------~~~~~~~i-----~~l~~~ldLr~N~~~--~~dls~~~~l~~l~ 205 (1081)
T KOG0618|consen 165 LNVL--------------------------------GGSFLIDI-----YNLTHQLDLRYNEME--VLDLSNLANLEVLH 205 (1081)
T ss_pred hhhc--------------------------------ccchhcch-----hhhheeeecccchhh--hhhhhhccchhhhh
Confidence 1111 11112111 1222 3666666553 22344455555554
Q ss_pred ccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCC---CCCC
Q 047894 815 VKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPE---LLPS 891 (1087)
Q Consensus 815 L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~ 891 (1087)
...+.... +. ..-|+|+.|..++++-.. ..+.....+|++++++.+ ++. .+|. .+++
T Consensus 206 c~rn~ls~-l~---------~~g~~l~~L~a~~n~l~~--------~~~~p~p~nl~~~dis~n-~l~-~lp~wi~~~~n 265 (1081)
T KOG0618|consen 206 CERNQLSE-LE---------ISGPSLTALYADHNPLTT--------LDVHPVPLNLQYLDISHN-NLS-NLPEWIGACAN 265 (1081)
T ss_pred hhhcccce-EE---------ecCcchheeeeccCccee--------eccccccccceeeecchh-hhh-cchHHHHhccc
Confidence 44322111 10 113445555554443221 111122345666666655 444 3442 2445
Q ss_pred ccEEEEeecCCccccC--CCCCcccEEEe--------c-cCCCcCCccEEEeccCCCCCCCchhhhcCCCC-CceEEecc
Q 047894 892 LETLVVSKCGKLVVPL--SCYPMLCRLEV--------D-ECKELANLRSLLICNSTALKSLPEEMMENNSQ-LEKLYIRD 959 (1087)
Q Consensus 892 L~~L~l~~~~~~~~~~--~~~~~L~~l~~--------~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~ 959 (1087)
|+.++...|.-...+. ....+|+.+.. . ...++.+|++|++..|.+ ..+|..++..... |+.|+.+.
T Consensus 266 le~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 266 LEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred ceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhh
Confidence 5555554442111110 00111111111 1 112355666666666663 4455444333332 55555553
Q ss_pred CCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEE
Q 047894 960 CESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICI 1039 (1087)
Q Consensus 960 c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 1039 (1087)
++ +...+ ...=.....|+.|.+.+|+++..+.+.+.+.+.|+.|++++|++.......+.++..|++|++
T Consensus 345 n~-l~~lp---------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 345 NK-LSTLP---------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL 414 (1081)
T ss_pred cc-ccccc---------cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence 32 22221 111112245566666667776666666666666777777777654333344566666666666
Q ss_pred ecCCCCcccCC
Q 047894 1040 RKCPSLVSFPE 1050 (1087)
Q Consensus 1040 ~~c~~l~~lp~ 1050 (1087)
++ ++|+.||.
T Consensus 415 SG-NkL~~Lp~ 424 (1081)
T KOG0618|consen 415 SG-NKLTTLPD 424 (1081)
T ss_pred cc-chhhhhhH
Confidence 66 55555553
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.5e-13 Score=162.14 Aligned_cols=78 Identities=23% Similarity=0.251 Sum_probs=58.6
Q ss_pred CcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecC
Q 047894 578 KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRG 657 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 657 (1087)
..-.+|+++++.++.+|..+.. +|+.|++++|.++.+|.. +++|++|++++|. ++.+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhc--CCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccC
Confidence 4466889999888888887764 788899999888888863 5788888888864 6677753 35777888877
Q ss_pred CccccccC
Q 047894 658 AKLLKEMP 665 (1087)
Q Consensus 658 ~~~~~~~p 665 (1087)
|. +..+|
T Consensus 272 N~-L~~Lp 278 (788)
T PRK15387 272 NP-LTHLP 278 (788)
T ss_pred Cc-hhhhh
Confidence 76 55454
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=9.7e-12 Score=159.19 Aligned_cols=293 Identities=16% Similarity=0.178 Sum_probs=181.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC-cccHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD-VFDVLGISK 243 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~ 243 (1087)
...++-|..-.+ .|... ...+++.|+|++|.||||++.++.+. ++.++|+++.. +.+...+..
T Consensus 13 ~~~~~~R~rl~~----~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~-------~~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 13 LHNTVVRERLLA----KLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG-------KNNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred ccccCcchHHHH----HHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh-------CCCeEEEecCcccCCHHHHHH
Confidence 445666664444 44322 34579999999999999999998853 22589999964 445566667
Q ss_pred HHHHHhhcCCCC-------------cccHHHHHHHHHHhhC--CCceEEEEecCCCCCHhhHHHhhccccc-CCCCcEEE
Q 047894 244 ALLESITSAASD-------------LKTLNEVQVQLKKAVD--GKRFLLVLDDVWNEDYSLWVDLKAPFLA-AEPNSKMI 307 (1087)
Q Consensus 244 ~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~~s~il 307 (1087)
.++..+...... ......+...+...+. +++++|||||+...+..........+.. ..++.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 777777432111 0122233333333332 6789999999976653444444444443 34567888
Q ss_pred EEcCCcccccc--c-CCCceeeCC----CCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhh
Q 047894 308 VTTRNSNVAST--M-GPIEHYNLK----SLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLL 380 (1087)
Q Consensus 308 vTtr~~~v~~~--~-~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 380 (1087)
||||....... . .......+. +|+.+|+.++|....... ...+...+|++.|+|.|+++..++..+
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99997422111 0 011234555 999999999998755321 123456789999999999999888776
Q ss_pred cCCCHHHHHHHHhhhccCCC--CCCChHHHHHh-hhcCCchhhHHHHHHHccCCCCcccChhhhHHHhHhCCCcccCCch
Q 047894 381 RTTRHDAWDDILESKIWDLP--RQSGVLPVLRL-SYHHLPSHLKRCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSK 457 (1087)
Q Consensus 381 ~~~~~~~w~~~~~~~~~~~~--~~~~i~~~l~~-sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~ 457 (1087)
+..... ..... +.+. ....+...+.- .|+.||++.++.+...|+++ .++.+-.-. +...
T Consensus 230 ~~~~~~-~~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~~---- 291 (903)
T PRK04841 230 RQNNSS-LHDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTGE---- 291 (903)
T ss_pred hhCCCc-hhhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcCC----
Confidence 543210 00111 1111 11335555443 48899999999999999997 344332221 1111
Q ss_pred hhHHHHHHHHHHHHhhCCCCcccccCCcccEEEcHHHHHHHHHhh
Q 047894 458 ERLEDWGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELVS 502 (1087)
Q Consensus 458 ~~~e~~~~~~~~~L~~~~l~~~~~~~~~~~~~~h~~v~~~~~~~~ 502 (1087)
+-+...+++|.+.+++..........|+.|++++++++...
T Consensus 292 ----~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ----ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 12357799999999975432233457899999999998764
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=1.6e-12 Score=153.55 Aligned_cols=237 Identities=23% Similarity=0.236 Sum_probs=115.4
Q ss_pred CcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCcceeeccCCCCceeeccccccCCcccCCCCc
Q 047894 761 CIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 840 (1087)
Q Consensus 761 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L 840 (1087)
+++.|.+.++....+|.. +++|++|++++|.+. .+|.+ .++|+.|+++++. +..++. .+++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l-----p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L~~Lp~---------lp~~L 284 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL-----PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-LTHLPA---------LPSGL 284 (788)
T ss_pred CCCEEEccCCcCCCCCCC-----CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-hhhhhh---------chhhc
Confidence 566666666666665542 456677777666543 34432 3566666665542 222211 02334
Q ss_pred cEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEecc
Q 047894 841 EILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDE 920 (1087)
Q Consensus 841 ~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~ 920 (1087)
+.|.+.+. .+... | ..+++|+.|++++| +++ .+|...++|+.|.+++|.-.. +|.
T Consensus 285 ~~L~Ls~N--------~Lt~L-P-~~p~~L~~LdLS~N-~L~-~Lp~lp~~L~~L~Ls~N~L~~-----LP~-------- 339 (788)
T PRK15387 285 CKLWIFGN--------QLTSL-P-VLPPGLQELSVSDN-QLA-SLPALPSELCKLWAYNNQLTS-----LPT-------- 339 (788)
T ss_pred CEEECcCC--------ccccc-c-ccccccceeECCCC-ccc-cCCCCcccccccccccCcccc-----ccc--------
Confidence 44444332 11110 1 12345555555555 444 344433445555554442100 000
Q ss_pred CCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCC
Q 047894 921 CKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSS 1000 (1087)
Q Consensus 921 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~ 1000 (1087)
. ..+|++|++++|.+. .+|. ..++|+.|++++|. +..+|. ++ .+|+.|++++|.+.+ +
T Consensus 340 l--p~~Lq~LdLS~N~Ls-~LP~----lp~~L~~L~Ls~N~-L~~LP~--l~-----------~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 340 L--PSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNR-LTSLPA--LP-----------SGLKELIVSGNRLTS-L 397 (788)
T ss_pred c--ccccceEecCCCccC-CCCC----CCcccceehhhccc-cccCcc--cc-----------cccceEEecCCcccC-C
Confidence 0 125666666666643 3442 13456666666543 332321 11 245555556665554 2
Q ss_pred CCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCC-CCCCCcCeEEEccCCCCCC
Q 047894 1001 PSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPER-GLPNTISAVYICECDKLEA 1070 (1087)
Q Consensus 1001 ~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~~l~~ 1070 (1087)
|. .+++|+.|++++|++. .+|.. ..+|+.|++++ ++++.+|.. ..+++|+.|++++|+.-..
T Consensus 398 P~---l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 398 PV---LPSELKELMVSGNRLT-SLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CC---cccCCCEEEccCCcCC-CCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCch
Confidence 32 2345777777777654 45542 24566677766 556666652 2235677777777664433
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=7.2e-13 Score=160.27 Aligned_cols=107 Identities=31% Similarity=0.385 Sum_probs=89.8
Q ss_pred CCCcccEEEecCCC--CcccCcc-ccCCccceeeccCCCc-CcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcC
Q 047894 576 KFKRLRMLSLQGYC--IGELPIP-FEELRLLRFLNLADID-IKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLN 651 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~--i~~lp~~-i~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 651 (1087)
.++.|++|-+.+|. +..++.. |..+++|++|||++|. +.+||++|+.|.+||||+++++ .+..+|.++.+|.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 34579999999886 5666544 7789999999999775 7899999999999999999994 5899999999999999
Q ss_pred EEeecCCccccccCccCCCCCCCCccCeeeeC
Q 047894 652 HLDIRGAKLLKEMPCGMKELKKLRTLSNFIVG 683 (1087)
Q Consensus 652 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 683 (1087)
||++..+..+..+|.....|.+|++|..+...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 99999988666665556669999999876654
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=1.6e-14 Score=148.52 Aligned_cols=113 Identities=24% Similarity=0.266 Sum_probs=87.8
Q ss_pred hhhhhcccCCCCcccEEEecCCCCccc-CccccCCccceeeccCC-CcCccccc-ccccCCCCcEEEecCCCCCcccCcc
Q 047894 567 RTVLSDLLPKFKRLRMLSLQGYCIGEL-PIPFEELRLLRFLNLAD-IDIKSLPE-STCKLLNLEILILRNCSRLIKLPPK 643 (1087)
Q Consensus 567 ~~~~~~~~~~~~~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~ 643 (1087)
..+++.+|+.+++||.|||++|.|+.+ |..|.+|..|-.|-+.+ |+|+.+|+ .|+.|..||.|.+.-|......+..
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 345677888888999999998888877 78888888887776666 78888886 6888888888888877754555666
Q ss_pred cCCCCCcCEEeecCCccccccCc-cCCCCCCCCccCee
Q 047894 644 MRNLINLNHLDIRGAKLLKEMPC-GMKELKKLRTLSNF 680 (1087)
Q Consensus 644 i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~ 680 (1087)
+..|++|..|.+..|. ++.++. .+..+..+++++..
T Consensus 160 l~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred HHHhhhcchhcccchh-hhhhccccccchhccchHhhh
Confidence 8888888888888887 666776 36777777777643
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=6.5e-12 Score=149.74 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=65.8
Q ss_pred CcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecC
Q 047894 578 KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRG 657 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 657 (1087)
.+..+|+++++.++.+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcC
Confidence 457889999999999998775 489999999999999998765 589999999876 678887654 4788999988
Q ss_pred CccccccCcc
Q 047894 658 AKLLKEMPCG 667 (1087)
Q Consensus 658 ~~~~~~~p~~ 667 (1087)
|. +..+|..
T Consensus 251 N~-L~~LP~~ 259 (754)
T PRK15370 251 NR-ITELPER 259 (754)
T ss_pred Cc-cCcCChh
Confidence 87 5566643
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=4.9e-10 Score=128.15 Aligned_cols=301 Identities=15% Similarity=0.103 Sum_probs=174.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHH
Q 047894 164 TEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISK 243 (1087)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 243 (1087)
.+..++||++++++|...+...-.+ .....+.|+|++|+|||++++.++++..... ..-..+++++....+...++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCCHHHHHH
Confidence 4467999999999999998543211 2334578999999999999999998764332 223456777766667788899
Q ss_pred HHHHHhhcCC--CCcccHHHHHHHHHHhhC--CCceEEEEecCCCCC----HhhHHHhhcccccCCCCcE--EEEEcCCc
Q 047894 244 ALLESITSAA--SDLKTLNEVQVQLKKAVD--GKRFLLVLDDVWNED----YSLWVDLKAPFLAAEPNSK--MIVTTRNS 313 (1087)
Q Consensus 244 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~~s~--ilvTtr~~ 313 (1087)
.++.++.... ....+.+++...+.+.+. +++.+||||+++.-. ...+..+...+. ...+++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCc
Confidence 9999887521 122345666777777764 456899999996532 122333332222 112333 56665554
Q ss_pred ccccccC-------CCceeeCCCCChHhHHHHHHHhhcCCC--CCCcchhhHHHHHHHHHHhCCchhHHHHHHhhh--c-
Q 047894 314 NVASTMG-------PIEHYNLKSLSDDDCWSIFIKHVFESR--DLNAHQISESFRKKVVAKCGGLALAAKTLGGLL--R- 381 (1087)
Q Consensus 314 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l--~- 381 (1087)
.+..... ....+.+++++.++..+++..++.... ..-.++..+.+++......|..+.|+..+-.+. +
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3322111 124678999999999999988763221 111222333333333333455777776654321 1
Q ss_pred --C--C-CHHHHHHHHhhhccCCCCCCChHHHHHhhhcCCchhhHHHHHHHccC-CC-CcccChhhhHHH--hHhCCCcc
Q 047894 382 --T--T-RHDAWDDILESKIWDLPRQSGVLPVLRLSYHHLPSHLKRCLAYCAIF-PK-DYEFNEKEVTFL--WMAGGIIR 452 (1087)
Q Consensus 382 --~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f-p~-~~~i~~~~li~~--w~aeg~i~ 452 (1087)
. . +.+++..+.... -.....-.+..||.+.|..+..++.. .. ...+....+... .+++.+-.
T Consensus 264 ~~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 1 1 556666555542 12234556889999988766554422 11 123444444432 22221111
Q ss_pred cCCchhhHHHHHHHHHHHHhhCCCCcccc
Q 047894 453 QSRSKERLEDWGSKCFHDLVSRSIFQQTA 481 (1087)
Q Consensus 453 ~~~~~~~~e~~~~~~~~~L~~~~l~~~~~ 481 (1087)
...+ ...-..|+.+|...|++....
T Consensus 335 ~~~~----~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 335 EPRT----HTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred CcCc----HHHHHHHHHHHHhcCCeEEEE
Confidence 1111 122356899999999988643
No 22
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=1.2e-09 Score=117.96 Aligned_cols=181 Identities=19% Similarity=0.193 Sum_probs=115.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHH----Hh
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLK----KA 269 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~~ 269 (1087)
.++.|+|++|+||||+++.+++..... .. ..+|+. ....+..+++..+...++..... .........+. ..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQE--RV-VAAKLV-NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCC--Ce-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 578999999999999999999875421 11 223433 33446678888888888664432 22222233333 22
Q ss_pred -hCCCceEEEEecCCCCCHhhHHHhhcccc--c-CCCCcEEEEEcCCccccccc----------CCCceeeCCCCChHhH
Q 047894 270 -VDGKRFLLVLDDVWNEDYSLWVDLKAPFL--A-AEPNSKMIVTTRNSNVASTM----------GPIEHYNLKSLSDDDC 335 (1087)
Q Consensus 270 -l~~kr~LlVlDdv~~~~~~~~~~l~~~l~--~-~~~~s~ilvTtr~~~v~~~~----------~~~~~~~l~~L~~~~~ 335 (1087)
..+++.++|+||+|......++.+..... . ......|++|.... ....+ .....+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 36788999999998877666666543211 1 12233555665432 11111 1124578999999999
Q ss_pred HHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhh
Q 047894 336 WSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLL 380 (1087)
Q Consensus 336 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 380 (1087)
.+++...+............++..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988764333221223445788999999999999999988775
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=3.2e-13 Score=122.54 Aligned_cols=124 Identities=25% Similarity=0.283 Sum_probs=102.1
Q ss_pred ccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCC-CcccCcccCCCCCcC
Q 047894 573 LLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSR-LIKLPPKMRNLINLN 651 (1087)
Q Consensus 573 ~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~-l~~lp~~i~~L~~L~ 651 (1087)
-+..+.+|.+|.+++|++.++|.++..++.||.|++.-|++..+|..|+.++-|++|||.+|.. -..+|..|..+..|+
T Consensus 51 nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLR 130 (264)
T ss_pred cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999998764 345898899999999
Q ss_pred EEeecCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccc
Q 047894 652 HLDIRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCL 697 (1087)
Q Consensus 652 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L 697 (1087)
-|+++.|. ...+|+++++|++||.|........+.+..+..|..|
T Consensus 131 alyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 131 ALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRL 175 (264)
T ss_pred HHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence 99999988 7889999999999999976544433333333333333
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.18 E-value=4.2e-11 Score=142.87 Aligned_cols=241 Identities=22% Similarity=0.284 Sum_probs=132.5
Q ss_pred ccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccE
Q 047894 763 KKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEI 842 (1087)
Q Consensus 763 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~ 842 (1087)
..|.+.+.....+|..+ .++|+.|++++|.+. .+|. ...++|+.|+++++. ++.++..+ ++.|+.
T Consensus 181 ~~L~L~~~~LtsLP~~I----p~~L~~L~Ls~N~Lt-sLP~-~l~~nL~~L~Ls~N~-LtsLP~~l--------~~~L~~ 245 (754)
T PRK15370 181 TELRLKILGLTTIPACI----PEQITTLILDNNELK-SLPE-NLQGNIKTLYANSNQ-LTSIPATL--------PDTIQE 245 (754)
T ss_pred eEEEeCCCCcCcCCccc----ccCCcEEEecCCCCC-cCCh-hhccCCCEEECCCCc-cccCChhh--------hccccE
Confidence 34444444444555443 235666666666543 3331 112456666666542 33222111 234555
Q ss_pred eeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCC-CCccEEEEeecCCccccCCCCCcccEEEeccC
Q 047894 843 LSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELL-PSLETLVVSKCGKLVVPLSCYPMLCRLEVDEC 921 (1087)
Q Consensus 843 L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~ 921 (1087)
|.+++.. +. .+|...+.+|+.|++++| +++ .+|..+ ++|+.|++++|.-.. ++. .+
T Consensus 246 L~Ls~N~--------L~-~LP~~l~s~L~~L~Ls~N-~L~-~LP~~l~~sL~~L~Ls~N~Lt~-----LP~-------~l 302 (754)
T PRK15370 246 MELSINR--------IT-ELPERLPSALQSLDLFHN-KIS-CLPENLPEELRYLSVYDNSIRT-----LPA-------HL 302 (754)
T ss_pred EECcCCc--------cC-cCChhHhCCCCEEECcCC-ccC-ccccccCCCCcEEECCCCcccc-----Ccc-------cc
Confidence 5555432 11 111222346788888765 666 566544 367888887762110 010 00
Q ss_pred CCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCC
Q 047894 922 KELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSP 1001 (1087)
Q Consensus 922 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~ 1001 (1087)
.++|+.|++++|.+. .+|..+ .++|+.|++++|. ++.+|. .+| ++|+.|++++|+++. +|
T Consensus 303 --p~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~-Lt~LP~-~l~-----------~sL~~L~Ls~N~L~~-LP 362 (754)
T PRK15370 303 --PSGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENA-LTSLPA-SLP-----------PELQVLDVSKNQITV-LP 362 (754)
T ss_pred --hhhHHHHHhcCCccc-cCCccc---cccceeccccCCc-cccCCh-hhc-----------CcccEEECCCCCCCc-CC
Confidence 136777888888754 455433 4678888888875 343432 222 456666666666654 34
Q ss_pred CCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCC-----CCCCCcCeEEEccCCC
Q 047894 1002 SSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPER-----GLPNTISAVYICECDK 1067 (1087)
Q Consensus 1002 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~-----~~~~sL~~L~i~~c~~ 1067 (1087)
..+ +++|++|+|++|.+. .+|..+. .+|+.|++++ ++++.+|+. +..+++..|++.+|+.
T Consensus 363 ~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 363 ETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 332 467888888888765 5565543 4688888888 567777752 1125678888888774
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.14 E-value=1.4e-08 Score=114.79 Aligned_cols=302 Identities=16% Similarity=0.087 Sum_probs=170.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCC---CeEEEEEeCCcccHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKF---DVKAWVCVSDVFDVLGI 241 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~ 241 (1087)
+..++||++++++|..++.....+ .....+.|+|++|+|||++++.+++......... -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~--~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG--SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 347999999999999998752211 2335689999999999999999998643211011 24567777777777889
Q ss_pred HHHHHHHhhc---CCC-CcccHHHHHHHHHHhh--CCCceEEEEecCCCCC---HhhHHHhhccc-ccCC--CCcEEEEE
Q 047894 242 SKALLESITS---AAS-DLKTLNEVQVQLKKAV--DGKRFLLVLDDVWNED---YSLWVDLKAPF-LAAE--PNSKMIVT 309 (1087)
Q Consensus 242 ~~~i~~~l~~---~~~-~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~~s~ilvT 309 (1087)
+..+++++.. ... ...+..+....+.+.+ .+++++||||+++.-. ......+.... .... ....+|++
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 9999998842 111 1223445555565555 3567899999996541 11122222211 1111 22344445
Q ss_pred cCCccccccc----C---CCceeeCCCCChHhHHHHHHHhhcCC-CCCCcchhhHHHHHHHHHHhCCchhHHHHHHhh-h
Q 047894 310 TRNSNVASTM----G---PIEHYNLKSLSDDDCWSIFIKHVFES-RDLNAHQISESFRKKVVAKCGGLALAAKTLGGL-L 380 (1087)
Q Consensus 310 tr~~~v~~~~----~---~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~-l 380 (1087)
+........+ . ....+.+++.+.++..+++..++-.. ....-.+...+...+++..+.|.|-.+..+... .
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5433221111 0 12468899999999999999886311 111112222334455677777888544332221 1
Q ss_pred ----c-C--C-CHHHHHHHHhhhccCCCCCCChHHHHHhhhcCCchhhHHHHHHHccC--CCCcccChhhhHHHhH--hC
Q 047894 381 ----R-T--T-RHDAWDDILESKIWDLPRQSGVLPVLRLSYHHLPSHLKRCLAYCAIF--PKDYEFNEKEVTFLWM--AG 448 (1087)
Q Consensus 381 ----~-~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f--p~~~~i~~~~li~~w~--ae 448 (1087)
. . . +.++...+.... -.....-++..||.+.|..+..++.. ..+..+....+...+- ++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 1 1 445555444432 12334456789999888666554421 1333455566655331 12
Q ss_pred CCcccCCchhhHHHHHHHHHHHHhhCCCCcccc
Q 047894 449 GIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTA 481 (1087)
Q Consensus 449 g~i~~~~~~~~~e~~~~~~~~~L~~~~l~~~~~ 481 (1087)
.+-.... .+.....++..|...|++....
T Consensus 323 ~~~~~~~----~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 323 DIGVDPL----TQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred hcCCCCC----cHHHHHHHHHHHHhcCCeEEEE
Confidence 1111111 1344567889999999998654
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=1.2e-12 Score=118.78 Aligned_cols=102 Identities=27% Similarity=0.347 Sum_probs=86.3
Q ss_pred CCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEe
Q 047894 575 PKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLD 654 (1087)
Q Consensus 575 ~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 654 (1087)
..+.+++-|.|++|.++.+|..|..|.+|+.|++++|+|+++|.+|+.+++|+.|++.-|+ +..+|.+|+.++-|+.||
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhh
Confidence 3556788899999999999999999999999999999999999999999999999999876 788999999999999999
Q ss_pred ecCCccc-cccCccCCCCCCCCcc
Q 047894 655 IRGAKLL-KEMPCGMKELKKLRTL 677 (1087)
Q Consensus 655 l~~~~~~-~~~p~~i~~L~~L~~L 677 (1087)
+..|+.. ..+|..+-.|+.|+.|
T Consensus 109 ltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred ccccccccccCCcchhHHHHHHHH
Confidence 9988732 2355545445555544
No 27
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.03 E-value=8.9e-09 Score=113.11 Aligned_cols=276 Identities=17% Similarity=0.114 Sum_probs=149.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
.+|+|+++.++++..++....... .....+.++|++|+|||+||+.+++.... .+ ..+..+....... +...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~Gp~G~GKT~la~~ia~~~~~---~~---~~~~~~~~~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ-EALDHLLLYGPPGLGKTTLAHIIANEMGV---NL---KITSGPALEKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHhCC---CE---EEeccchhcCchh-HHHH
Confidence 369999999999998886432211 33456889999999999999999886432 11 1222211111111 1222
Q ss_pred HHHhhcCC----CCccc-HHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccccccC
Q 047894 246 LESITSAA----SDLKT-LNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVASTMG 320 (1087)
Q Consensus 246 ~~~l~~~~----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~~~~ 320 (1087)
+..+.... ++... .......+...+.+.+..+|+|+..... .| ...+ .+.+-|..||+...+.....
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHHH
Confidence 22222111 00000 0112333444555555556666553321 11 1111 12456666777654443211
Q ss_pred --CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCCCHHHHHHHHhhhccC
Q 047894 321 --PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTTRHDAWDDILESKIWD 398 (1087)
Q Consensus 321 --~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~w~~~~~~~~~~ 398 (1087)
....+.+++++.++..+++.+.+..... ....+....|++.|+|.|-.+..++..+ |..........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~ 216 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKI 216 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCC
Confidence 1246789999999999999988753322 2334566789999999998765555432 11110000000
Q ss_pred CCC--CCChHHHHHhhhcCCchhhHHHHH-HHccCCCCcccChhhhHHHhHhCCCcccCCchhhHHHHHHHHHH-HHhhC
Q 047894 399 LPR--QSGVLPVLRLSYHHLPSHLKRCLA-YCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKERLEDWGSKCFH-DLVSR 474 (1087)
Q Consensus 399 ~~~--~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~e~~~~~~~~-~L~~~ 474 (1087)
... -......+...|..++++.+..+. ..+.++.+ .+..+.+.... .. ....++..++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------g~------~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------GE------DADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------CC------CcchHHHhhhHHHHHc
Confidence 000 011222356678889998887776 55767543 34444333221 11 1234556677 69999
Q ss_pred CCCcccc
Q 047894 475 SIFQQTA 481 (1087)
Q Consensus 475 ~l~~~~~ 481 (1087)
+|++...
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997554
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.03 E-value=4.8e-09 Score=115.72 Aligned_cols=277 Identities=17% Similarity=0.156 Sum_probs=149.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
-.+|+|+++.++.+..++......+ .....+.++|++|+|||++|+.+++.... .+ .++..+.. .....+..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~GppG~GKT~la~~ia~~l~~---~~---~~~~~~~~-~~~~~l~~ 95 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRG-EALDHVLLYGPPGLGKTTLANIIANEMGV---NI---RITSGPAL-EKPGDLAA 95 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCccHHHHHHHHHHHhCC---Ce---EEEecccc-cChHHHHH
Confidence 4579999999999988876432111 34467889999999999999999987532 11 12222211 11112222
Q ss_pred HHHHhhcCCC----CcccH-HHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCccccccc
Q 047894 245 LLESITSAAS----DLKTL-NEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVASTM 319 (1087)
Q Consensus 245 i~~~l~~~~~----~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~~~ 319 (1087)
++..+..... +...+ ......+...+.+.+..+|+|+..+... +...+ .+.+-|..|++...+....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCCcccCCHHH
Confidence 2222221110 00000 1112223334444444455554432210 00011 1245566677755444322
Q ss_pred C--CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCCCHHHHHHHHhhhcc
Q 047894 320 G--PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTTRHDAWDDILESKIW 397 (1087)
Q Consensus 320 ~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~w~~~~~~~~~ 397 (1087)
. ....+.+++++.++..+++.+.+..... ...++.+..|++.|+|.|-.+..+...+. .|...... .
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~~--~ 236 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKGD--G 236 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcCC--C
Confidence 1 1246899999999999999988754322 23345678899999999976655554321 22211110 0
Q ss_pred CCCC--CCChHHHHHhhhcCCchhhHHHHH-HHccCCCCcccChhhhHHHhHhCCCcccCCchhhHHHHHHHHHH-HHhh
Q 047894 398 DLPR--QSGVLPVLRLSYHHLPSHLKRCLA-YCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKERLEDWGSKCFH-DLVS 473 (1087)
Q Consensus 398 ~~~~--~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~e~~~~~~~~-~L~~ 473 (1087)
.... -......+...|..|++..+..+. ....|+.+ .+..+.+.... . .+. +.++..++ .|++
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g--~~~----~~~~~~~e~~Li~ 303 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G--EER----DTIEDVYEPYLIQ 303 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C--CCc----chHHHHhhHHHHH
Confidence 0000 012234456677889888888775 77777765 45555543322 1 111 23344455 8999
Q ss_pred CCCCcccc
Q 047894 474 RSIFQQTA 481 (1087)
Q Consensus 474 ~~l~~~~~ 481 (1087)
.+|++...
T Consensus 304 ~~li~~~~ 311 (328)
T PRK00080 304 QGFIQRTP 311 (328)
T ss_pred cCCcccCC
Confidence 99997554
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.03 E-value=2.1e-08 Score=115.04 Aligned_cols=297 Identities=18% Similarity=0.185 Sum_probs=188.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISK 243 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~ 243 (1087)
+...|-|. ++++.|... ...+++.|..++|.|||||+.+...... .-..+.|.+.+.. .+...+..
T Consensus 18 ~~~~v~R~----rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~~~----~~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRELAA----DGAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred cccccccH----HHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHhcC----cccceeEeecCCccCCHHHHHH
Confidence 44555555 455555443 4568999999999999999999986221 2346899998754 56777888
Q ss_pred HHHHHhhcCCCC-------------cccHHHHHHHHHHhhC--CCceEEEEecCCCCCHhhHHHhhcccc-cCCCCcEEE
Q 047894 244 ALLESITSAASD-------------LKTLNEVQVQLKKAVD--GKRFLLVLDDVWNEDYSLWVDLKAPFL-AAEPNSKMI 307 (1087)
Q Consensus 244 ~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~~s~il 307 (1087)
.+++.+..-.+. ......+...+...+. .++..+||||-.-........-...|. ...++-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 888877743321 2233334444444443 468899999975443333333333333 345688999
Q ss_pred EEcCCccccccc--C-CCceee----CCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhh
Q 047894 308 VTTRNSNVASTM--G-PIEHYN----LKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLL 380 (1087)
Q Consensus 308 vTtr~~~v~~~~--~-~~~~~~----l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 380 (1087)
||||++.-.... . ....++ .-.++.+|+.++|..... .+..+...+.+.+..+|.+-|+..++=.+
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHHHc
Confidence 999986432211 0 011222 235789999999987541 23334566789999999999999998888
Q ss_pred cCC-CHHHHHHHHhhhccCCCCCCChHH-HHHhhhcCCchhhHHHHHHHccCCCCcccChhhhHHHhHhCCCcccCCchh
Q 047894 381 RTT-RHDAWDDILESKIWDLPRQSGVLP-VLRLSYHHLPSHLKRCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKE 458 (1087)
Q Consensus 381 ~~~-~~~~w~~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~ 458 (1087)
+.+ +.+.-...+... ...+.. ...--++.||+++|..++-||+++.- . ..|+..-
T Consensus 238 ~~~~~~~q~~~~LsG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L------------- 294 (894)
T COG2909 238 RNNTSAEQSLRGLSGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL------------- 294 (894)
T ss_pred cCCCcHHHHhhhccch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH-------------
Confidence 844 332222111100 011111 22334789999999999999999642 1 2333221
Q ss_pred hHHHHHHHHHHHHhhCCCCcccccCCcccEEEcHHHHHHHHHhhhc
Q 047894 459 RLEDWGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELVSRE 504 (1087)
Q Consensus 459 ~~e~~~~~~~~~L~~~~l~~~~~~~~~~~~~~h~~v~~~~~~~~~~ 504 (1087)
+-++-+...+++|.+++++-..-.+....|+.|.+..+|.+..-..
T Consensus 295 tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 1123366789999999998655546677899999999998865443
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.01 E-value=1.4e-09 Score=114.91 Aligned_cols=195 Identities=17% Similarity=0.266 Sum_probs=98.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH--
Q 047894 168 VFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL-- 245 (1087)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-- 245 (1087)
|+||++|+++|.+++.... ...+.|+|+.|+|||+|++++.+..... .+ ..+|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~~~~--~~-~~~y~~~~~~~~~~~-~~~~~~ 70 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINELKEK--GY-KVVYIDFLEESNESS-LRSFIE 70 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHhhhc--CC-cEEEEecccchhhhH-HHHHHH
Confidence 7999999999999987642 2578999999999999999999875322 11 234444333322211 1111
Q ss_pred --------HHHhhcCCC----------CcccHHHHHHHHHHhh--CCCceEEEEecCCCCC------HhhHHHhhccccc
Q 047894 246 --------LESITSAAS----------DLKTLNEVQVQLKKAV--DGKRFLLVLDDVWNED------YSLWVDLKAPFLA 299 (1087)
Q Consensus 246 --------~~~l~~~~~----------~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~ 299 (1087)
.+.+..... ...........+.+.+ .+++++||+||+.... ......+...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 71 ETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 111211110 0111122222222222 2345999999985433 1111222222222
Q ss_pred --CCCCcEEEEEcCCcccccc--------cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCc
Q 047894 300 --AEPNSKMIVTTRNSNVAST--------MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGL 369 (1087)
Q Consensus 300 --~~~~s~ilvTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 369 (1087)
......+|++......... .+....+.+++|+.+++++++...+-.. ..- +..++..++|+..+||+
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCC
Confidence 2233344444443322221 2223459999999999999999865332 111 12344568999999999
Q ss_pred hhHHHH
Q 047894 370 ALAAKT 375 (1087)
Q Consensus 370 PLai~~ 375 (1087)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998864
No 31
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=5e-09 Score=103.92 Aligned_cols=143 Identities=24% Similarity=0.355 Sum_probs=90.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccC----CCeEEEEEeCCcccHH---HHHHHHHHHhhcCCCCcccHHHHHHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSK----FDVKAWVCVSDVFDVL---GISKALLESITSAASDLKTLNEVQVQL 266 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l 266 (1087)
+++.|+|.+|+||||+++.++.+..... . +...+|+..+...... .+...+..+..... ..... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE-PPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC-cccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HH
Confidence 4789999999999999999988765432 2 4566777776554433 23333333332211 11111 11
Q ss_pred HHh-hCCCceEEEEecCCCCCHh-------hHHHhhcccccC--CCCcEEEEEcCCccc---ccccCCCceeeCCCCChH
Q 047894 267 KKA-VDGKRFLLVLDDVWNEDYS-------LWVDLKAPFLAA--EPNSKMIVTTRNSNV---ASTMGPIEHYNLKSLSDD 333 (1087)
Q Consensus 267 ~~~-l~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~~~--~~~s~ilvTtr~~~v---~~~~~~~~~~~l~~L~~~ 333 (1087)
... -..++++||+|++++-... .+..+...+... .++.+++||+|.... .........+.+++|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 111 2578999999999654321 133333333333 568999999998766 233344467999999999
Q ss_pred hHHHHHHHhh
Q 047894 334 DCWSIFIKHV 343 (1087)
Q Consensus 334 ~~~~lf~~~~ 343 (1087)
+..+++.++.
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999997754
No 32
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.80 E-value=2.4e-07 Score=107.29 Aligned_cols=250 Identities=13% Similarity=0.091 Sum_probs=139.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc--ccCCC--eEEEEEeCCcccHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVR--DSKFD--VKAWVCVSDVFDVLG 240 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~s~~~~~~~ 240 (1087)
+..+.||++|+++|...|...-.+. ....++.|+|++|+|||++++.|.+..... ..... .+++|++....+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 4578899999999999886543211 333678899999999999999998764211 11111 356777766677888
Q ss_pred HHHHHHHHhhcCCC-CcccHHHHHHHHHHhhC---CCceEEEEecCCCCCHhhHHHhhcccc-cCCCCcEEEE--EcCCc
Q 047894 241 ISKALLESITSAAS-DLKTLNEVQVQLKKAVD---GKRFLLVLDDVWNEDYSLWVDLKAPFL-AAEPNSKMIV--TTRNS 313 (1087)
Q Consensus 241 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~~s~ilv--Ttr~~ 313 (1087)
++..|.+++..... ......+....+...+. +...+||||+++.-....-+.+...+. +...+++|+| ++.+.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 88999988854332 22223334444444442 224589999995432111112222221 1234555554 33221
Q ss_pred c--------cccccCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCC--
Q 047894 314 N--------VASTMGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTT-- 383 (1087)
Q Consensus 314 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~-- 383 (1087)
. +...++. ..+..+|.+.++-.+++..++-.....-.+..++-+|+.++...|..=.|+.++-.+....
T Consensus 913 DLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 1 2222222 2467799999999999999885432222333444444444444445555665554433221
Q ss_pred ---CHHHHHHHHhhhccCCCCCCChHHHHHhhhcCCchhhHHHHH
Q 047894 384 ---RHDAWDDILESKIWDLPRQSGVLPVLRLSYHHLPSHLKRCLA 425 (1087)
Q Consensus 384 ---~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~ 425 (1087)
..++...+.... ....+.-....||.+.|-.+.
T Consensus 992 skVT~eHVrkAleei---------E~srI~e~IktLPlHqKLVLl 1027 (1164)
T PTZ00112 992 QKIVPRDITEATNQL---------FDSPLTNAINYLPWPFKMFLT 1027 (1164)
T ss_pred CccCHHHHHHHHHHH---------HhhhHHHHHHcCCHHHHHHHH
Confidence 333333333221 011233345688988776444
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=1.8e-07 Score=114.61 Aligned_cols=311 Identities=15% Similarity=0.169 Sum_probs=179.2
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc---ccHHHHHHH
Q 047894 168 VFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV---FDVLGISKA 244 (1087)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~ 244 (1087)
++||+.|.+.|...+..... +...++.+.|..|||||+++++|......+.+.|-.-.+-..... ....+.+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 78999999999999976654 455799999999999999999998754322112211111111111 122334444
Q ss_pred HHHHhhcCC-------------------C--------------------C--cccHHH-----HHHHHHHhh-CCCceEE
Q 047894 245 LLESITSAA-------------------S--------------------D--LKTLNE-----VQVQLKKAV-DGKRFLL 277 (1087)
Q Consensus 245 i~~~l~~~~-------------------~--------------------~--~~~~~~-----~~~~l~~~l-~~kr~Ll 277 (1087)
++.++.... . + ....+. .+..+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 444441110 0 0 000011 111222223 4569999
Q ss_pred EEecCCCCCHhhHHHhhcccccCC----CCcEEE--EEcCCc--ccccccCCCceeeCCCCChHhHHHHHHHhhcCCCCC
Q 047894 278 VLDDVWNEDYSLWVDLKAPFLAAE----PNSKMI--VTTRNS--NVASTMGPIEHYNLKSLSDDDCWSIFIKHVFESRDL 349 (1087)
Q Consensus 278 VlDdv~~~~~~~~~~l~~~l~~~~----~~s~il--vTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 349 (1087)
|+||+.+.|.....-+......-. ....|. .|.+.. .+.........+.|.||+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 999997766444332222111110 011232 233322 12222233468999999999999999887633222
Q ss_pred CcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCC-----CH--HHHHHHHhhhccCCCCCCChHHHHHhhhcCCchhhHH
Q 047894 350 NAHQISESFRKKVVAKCGGLALAAKTLGGLLRTT-----RH--DAWDDILESKIWDLPRQSGVLPVLRLSYHHLPSHLKR 422 (1087)
Q Consensus 350 ~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~-----~~--~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~ 422 (1087)
...+....|+++..|+|+.+..+-+.+... +. ..|..=..+ ....+..+.+...+..-.+.||...|.
T Consensus 238 ----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~vv~~l~~rl~kL~~~t~~ 312 (849)
T COG3899 238 ----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDAVVEFLAARLQKLPGTTRE 312 (849)
T ss_pred ----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHHHHHHHHHHHhcCCHHHHH
Confidence 234466789999999999999999888764 22 223221111 111111223555688899999999999
Q ss_pred HHHHHccCCCCcccChhhhHHHhHhCCCcccCCchhhHHHHHHHHHHHHhhCCCCcccccCC----ccc--E-EEcHHHH
Q 047894 423 CLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTAISD----SCK--F-VMHDLIH 495 (1087)
Q Consensus 423 cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~e~~~~~~~~~L~~~~l~~~~~~~~----~~~--~-~~h~~v~ 495 (1087)
.+...|++- -.|+.+.|-..|- ....+.+....+.|....++...+.+. ... | ..|+.++
T Consensus 313 Vl~~AA~iG--~~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 313 VLKAAACIG--NRFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHhC--ccCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 999999995 4566667766551 133455666666666666554332111 111 2 4688888
Q ss_pred HHHHH
Q 047894 496 DLAEL 500 (1087)
Q Consensus 496 ~~~~~ 500 (1087)
+.|-.
T Consensus 380 qaaY~ 384 (849)
T COG3899 380 QAAYN 384 (849)
T ss_pred HHHhc
Confidence 87754
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.70 E-value=2e-09 Score=111.65 Aligned_cols=283 Identities=17% Similarity=0.183 Sum_probs=161.3
Q ss_pred CCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeeccccccCCcccCC
Q 047894 759 HKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 837 (1087)
Q Consensus 759 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f 837 (1087)
|+...++.+..+.+..+|..... .+++|+.|+|++|.+...-| .|..++.|..|.+.+.+.+++++...++. +
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-----L 139 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-----L 139 (498)
T ss_pred CCcceEEEeccCCcccCChhhcc-chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-----H
Confidence 45566778888888888766442 48889999999998876655 78889999999888888888777644332 2
Q ss_pred CCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCC----CCCCCccEEEEeecCCcccc-------
Q 047894 838 PSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP----ELLPSLETLVVSKCGKLVVP------- 906 (1087)
Q Consensus 838 p~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~~~~~------- 906 (1087)
.+|+.|.+-- +...+ +.. .....+++|..|.+.++ ++. .++ ..+..++.+.+..++-+..+
T Consensus 140 ~slqrLllNa---n~i~C--ir~-~al~dL~~l~lLslyDn-~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 140 SSLQRLLLNA---NHINC--IRQ-DALRDLPSLSLLSLYDN-KIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred HHHHHHhcCh---hhhcc--hhH-HHHHHhhhcchhcccch-hhh-hhccccccchhccchHhhhcCccccccccchhhh
Confidence 2222222111 11000 000 00112455555555555 333 222 12344455554444321110
Q ss_pred --------CCCCCc-----cc-----EEEeccCC-CcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccc
Q 047894 907 --------LSCYPM-----LC-----RLEVDECK-ELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIA 967 (1087)
Q Consensus 907 --------~~~~~~-----L~-----~l~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 967 (1087)
++.+.. +. .++-..+. .+.++.+-..+.|......|..-++.+++|++|++++|. ++.+.
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~ 290 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-ITRIE 290 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-cchhh
Confidence 000000 00 00000000 011222222233333444555445788888888888766 34333
Q ss_pred cCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCc-
Q 047894 968 RRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLV- 1046 (1087)
Q Consensus 968 ~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~- 1046 (1087)
.+ .|.+...+++|.+..|++.......|.++..|+.|++.+|+++...|..|..+.+|.+|.+-.+|...
T Consensus 291 ~~---------aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 291 DG---------AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hh---------hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 32 46667778888888887777666667788888888888888888888888888888888887766331
Q ss_pred ----------------ccCCCCCCCCcCeEEEccC
Q 047894 1047 ----------------SFPERGLPNTISAVYICEC 1065 (1087)
Q Consensus 1047 ----------------~lp~~~~~~sL~~L~i~~c 1065 (1087)
..|...-|..++.+.|++.
T Consensus 362 C~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv 396 (498)
T KOG4237|consen 362 CRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDV 396 (498)
T ss_pred cchHHHHHHHhhCCCCCCCCCCCCchhccccchhc
Confidence 2233444556777777653
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.64 E-value=3.4e-09 Score=117.96 Aligned_cols=86 Identities=22% Similarity=0.201 Sum_probs=46.7
Q ss_pred cCCCCcccEEEecCCCC-----cccCccccCCccceeeccCCCcCcc-------cccccccCCCCcEEEecCCCCCcccC
Q 047894 574 LPKFKRLRMLSLQGYCI-----GELPIPFEELRLLRFLNLADIDIKS-------LPESTCKLLNLEILILRNCSRLIKLP 641 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i-----~~lp~~i~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l~~lp 641 (1087)
+..+..|++|+++++.+ ..++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 44455567777776665 2234445555566666666665442 23345556666666666655433333
Q ss_pred cccCCCCC---cCEEeecCCc
Q 047894 642 PKMRNLIN---LNHLDIRGAK 659 (1087)
Q Consensus 642 ~~i~~L~~---L~~L~l~~~~ 659 (1087)
..+..+.+ |++|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc
Confidence 33333333 6666666654
No 36
>PTZ00202 tuzin; Provisional
Probab=98.64 E-value=4.8e-06 Score=89.61 Aligned_cols=172 Identities=12% Similarity=0.194 Sum_probs=106.4
Q ss_pred CCCCCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 159 SSSVPTEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 159 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
...|+..+.|+||++|..++...|..... ...+++.|+|++|+|||||++.+.... ++ ...+++.. +.
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l-----~~-~qL~vNpr---g~ 322 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKE-----GM-PAVFVDVR---GT 322 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcC-----Cc-eEEEECCC---CH
Confidence 34456677899999999999999865433 344699999999999999999998653 21 12333333 67
Q ss_pred HHHHHHHHHHhhcCCCCc--ccHHHHHHHHHHhh-C-CCceEEEEecCCCCC-HhhHHHhhcccccCCCCcEEEEEcCCc
Q 047894 239 LGISKALLESITSAASDL--KTLNEVQVQLKKAV-D-GKRFLLVLDDVWNED-YSLWVDLKAPFLAAEPNSKMIVTTRNS 313 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~~s~ilvTtr~~ 313 (1087)
.++++.++.+++.+.... .-.+.+.+.+.+.- . +++.+||+-==...+ ...+.+. ..+.....-|.|++----+
T Consensus 323 eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evple 401 (550)
T PTZ00202 323 EDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHh
Confidence 899999999999633221 12233333333322 3 677777775332221 1122222 2234445667888755443
Q ss_pred cccccc---CCCceeeCCCCChHhHHHHHHHhh
Q 047894 314 NVASTM---GPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 314 ~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
...-.. .....|.+++++.++|..+..+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 322111 111468899999999988877654
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.62 E-value=4.9e-07 Score=93.77 Aligned_cols=154 Identities=17% Similarity=0.180 Sum_probs=94.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.++|++|+|||+|++.+++....+ ...+.|+.+... .....+ +.+.+. +
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~---~~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKS---QYFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHh---hhhhHH---------------------HHhhcc-c
Confidence 468999999999999999999875322 223466665321 000001 111122 3
Q ss_pred ceEEEEecCCCCC-HhhHHH-hhccccc-CCCCcEEEEE-cCC---------cccccccCCCceeeCCCCChHhHHHHHH
Q 047894 274 RFLLVLDDVWNED-YSLWVD-LKAPFLA-AEPNSKMIVT-TRN---------SNVASTMGPIEHYNLKSLSDDDCWSIFI 340 (1087)
Q Consensus 274 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~~s~ilvT-tr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 340 (1087)
.-+||+||+|... ...|.. +...+.. ...|..+||+ +.. +.+...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3599999998642 234553 2222222 1235566554 443 2444555555689999999999999999
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhh
Q 047894 341 KHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGL 379 (1087)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~ 379 (1087)
+.++...- ...+++..-|++.+.|..-++..+-..
T Consensus 172 ~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 172 RNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 98864332 223556677899998877666554443
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=7.3e-07 Score=101.52 Aligned_cols=179 Identities=20% Similarity=0.251 Sum_probs=104.8
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAK---ILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++|++..+.. +..++... ....+.++|++|+||||+|+.+++... ..| +.++.......-.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~~---~~~-----~~l~a~~~~~~~i 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGATD---APF-----EALSAVTSGVKDL 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHhC---CCE-----EEEecccccHHHH
Confidence 458888877655 77776543 234678899999999999999988642 122 2222211111111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEE--cCCcc--ccc-
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVT--TRNSN--VAS- 317 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvT--tr~~~--v~~- 317 (1087)
+.+++.... ....+++.+|++|+++.-.....+.+...+. .+..+++. |.+.. +..
T Consensus 78 r~ii~~~~~----------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 78 REVIEEARQ----------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHHH----------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 222211110 1124678899999998766555555554443 24555543 33321 111
Q ss_pred ccCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHh
Q 047894 318 TMGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGG 378 (1087)
Q Consensus 318 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 378 (1087)
.......+.+.+++.++.+.++.+.+..... ......++....|++.|+|.+..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1112257899999999999999886532111 00123355677899999999987655443
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.55 E-value=8.8e-09 Score=114.64 Aligned_cols=89 Identities=22% Similarity=0.123 Sum_probs=56.1
Q ss_pred hcccCCCCcccEEEecCCCCcc-------cCccccCCccceeeccCCCcCc-ccccccccCCC---CcEEEecCCCCCc-
Q 047894 571 SDLLPKFKRLRMLSLQGYCIGE-------LPIPFEELRLLRFLNLADIDIK-SLPESTCKLLN---LEILILRNCSRLI- 638 (1087)
Q Consensus 571 ~~~~~~~~~Lr~L~l~~~~i~~-------lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~---L~~L~L~~~~~l~- 638 (1087)
...+...+.++.|+++++.+.. ++..+..+.+|++|++++|.+. ..+..+..+.+ |++|++++|....
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH
Confidence 3345566777788887776552 2344666778888888887765 34444544444 8888888776321
Q ss_pred ---ccCcccCCC-CCcCEEeecCCc
Q 047894 639 ---KLPPKMRNL-INLNHLDIRGAK 659 (1087)
Q Consensus 639 ---~lp~~i~~L-~~L~~L~l~~~~ 659 (1087)
.+...+..+ ++|+.|++++|.
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCc
Confidence 223344555 777888887776
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=3.3e-09 Score=111.08 Aligned_cols=281 Identities=18% Similarity=0.251 Sum_probs=141.5
Q ss_pred ccEEeeeCCCCCCCCC---CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccc
Q 047894 787 IELLELENCDNCVSLP---SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVH 863 (1087)
Q Consensus 787 L~~L~L~~~~~~~~l~---~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~ 863 (1087)
|+.|.+++|.....-+ .....|++++|.+.+|..++...-. ......++|+.+.+..|..|.... +...
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~----sla~~C~~l~~l~L~~c~~iT~~~--Lk~l-- 211 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL----SLARYCRKLRHLNLHSCSSITDVS--LKYL-- 211 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH----HHHHhcchhhhhhhcccchhHHHH--HHHH--
Confidence 4555555554322111 1234566666666666533322110 111225556666666655554432 2211
Q ss_pred cccCCcccEEEEecCCCccc----cCCCCCCCccEEEEeecCCccccC-----CCCCcccEEEeccC------------C
Q 047894 864 VEIFPRLHKLSIVECPKLSG----ELPELLPSLETLVVSKCGKLVVPL-----SCYPMLCRLEVDEC------------K 922 (1087)
Q Consensus 864 ~~~~~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~~~~~~-----~~~~~L~~l~~~~~------------~ 922 (1087)
...+|+|++|.++.|+.+++ .+..+...++.+..++|....... ...+-+-.+++..| .
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 23467777777777776664 122344555556555664433210 01111112222222 2
Q ss_pred CcCCccEEEeccCCCCCCCc-hhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCC--
Q 047894 923 ELANLRSLLICNSTALKSLP-EEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSS-- 999 (1087)
Q Consensus 923 ~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~-- 999 (1087)
++..|+.|..++|...+..+ ..+..++++|+.|-+.+|..++...-.. .=.+|+.|+.+++........
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~--------l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM--------LGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh--------hhcCChhhhhhcccccceehhhh
Confidence 33466777777766544332 2334566777777777777544322100 112344455444433211111
Q ss_pred CCCCCCCCCCccEEEEeccCCCccc-----CCCCCCCCCccEEEEecCCCCcccCC--CCCCCCcCeEEEccCCCCCCCC
Q 047894 1000 SPSSSSSPVMLQLLRIENCRKLESI-----PDGLPNLKCLQSICIRKCPSLVSFPE--RGLPNTISAVYICECDKLEAPP 1072 (1087)
Q Consensus 1000 ~~~~~~~l~~L~~L~l~~~~~~~~~-----p~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~~sL~~L~i~~c~~l~~~p 1072 (1087)
.-..-.+++.|++|.+++|...... ..+-.....|..|.+++||.++.--. ...-++|+.+++.+|..++.-|
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 1111246888999999988766443 22334567788889999987763221 1223578888888888777533
Q ss_pred C--CCCCCCCCCc
Q 047894 1073 N--DMHKLNSLQS 1083 (1087)
Q Consensus 1073 ~--~l~~l~~L~~ 1083 (1087)
- .-++++++++
T Consensus 444 i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 444 ISRFATHLPNIKV 456 (483)
T ss_pred hHHHHhhCcccee
Confidence 1 2345555544
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.53 E-value=1e-06 Score=93.04 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=93.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 270 (1087)
+.+.-...||++|+||||||+.+..... ..| ..++...+-.+-++.+++... ....
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~---~~f-----~~~sAv~~gvkdlr~i~e~a~----------------~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTN---AAF-----EALSAVTSGVKDLREIIEEAR----------------KNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhC---Cce-----EEeccccccHHHHHHHHHHHH----------------HHHh
Confidence 3455678999999999999999988533 133 333333222222222222211 1223
Q ss_pred CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEE--EcCCcccc---cccCCCceeeCCCCChHhHHHHHHHhhcC
Q 047894 271 DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIV--TTRNSNVA---STMGPIEHYNLKSLSDDDCWSIFIKHVFE 345 (1087)
Q Consensus 271 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilv--Ttr~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 345 (1087)
.|++.+|++|.|..-+..+.+.+.. .-..|.-|+| ||-++... .......++.+++|+.++-.+++.+.+..
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhh
Confidence 4899999999997665444444333 3345777777 44444322 11133368999999999999999884322
Q ss_pred CC-CCC--cchhhHHHHHHHHHHhCCchhHH
Q 047894 346 SR-DLN--AHQISESFRKKVVAKCGGLALAA 373 (1087)
Q Consensus 346 ~~-~~~--~~~~~~~~~~~i~~~c~g~PLai 373 (1087)
.. ... .....+++..-|++.++|---++
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 21 111 11133556678999999966544
No 42
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=1.6e-05 Score=92.56 Aligned_cols=245 Identities=13% Similarity=0.139 Sum_probs=140.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
.+++|.++.++++.+|+.....+ ...+.+.|+|++|+||||+|+.+++... ++ .+-++.++..+.. ....+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~el~-----~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALANDYG-----WE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHcC-----CC-EEEEcccccccHH-HHHHH
Confidence 46999999999999998754321 2257899999999999999999998742 22 2334444432222 22222
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhhC-CCceEEEEecCCCCCH----hhHHHhhcccccCCCCcEEEEEcCCc-cccc-c
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAVD-GKRFLLVLDDVWNEDY----SLWVDLKAPFLAAEPNSKMIVTTRNS-NVAS-T 318 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~~s~ilvTtr~~-~v~~-~ 318 (1087)
+....... .+. .++-+||+|+++.-.. ..+..+...+. ..+..||+|+.+. .... .
T Consensus 85 i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 22221100 111 3678999999965422 23444444443 2344566666432 2211 1
Q ss_pred c-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCC----CHHHHHHHHh
Q 047894 319 M-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTT----RHDAWDDILE 393 (1087)
Q Consensus 319 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~----~~~~w~~~~~ 393 (1087)
. .....+.+.+++.++....+.+.+...... ...++...|++.++|..-.+......+... +.+....+..
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~----i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~ 223 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIE----CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR 223 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc
Confidence 1 123578999999999998888766433222 224567889999999777665443333322 3444433322
Q ss_pred hhccCCCCCCChHHHHHhhhc-CCchhhHHHHHHHccCCCCcccChhhhHHHhHhCCCccc
Q 047894 394 SKIWDLPRQSGVLPVLRLSYH-HLPSHLKRCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQ 453 (1087)
Q Consensus 394 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~ 453 (1087)
.....+++.++..-+. .-+......+..+. ++. ..+-.|+.|.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 1113567777776655 33333333222211 222 45778999999765
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=3.8e-07 Score=86.11 Aligned_cols=118 Identities=22% Similarity=0.273 Sum_probs=81.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccc--cCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRD--SKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 270 (1087)
.+++.|+|.+|+|||++++.+.++..... ..-..++|+.+....+...+...+++.++.......+.+++...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 36899999999999999999998753210 0134567999988888999999999999987666556777778888877
Q ss_pred CCCc-eEEEEecCCCC-CHhhHHHhhcccccCCCCcEEEEEcCC
Q 047894 271 DGKR-FLLVLDDVWNE-DYSLWVDLKAPFLAAEPNSKMIVTTRN 312 (1087)
Q Consensus 271 ~~kr-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~ilvTtr~ 312 (1087)
...+ .+||+|++..- ....+..+.. +.. ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 6554 59999999554 4333444433 222 567788877765
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.45 E-value=7.5e-09 Score=112.42 Aligned_cols=104 Identities=32% Similarity=0.522 Sum_probs=87.1
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEE
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHL 653 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 653 (1087)
+..|-.|..+.|..|.+..+|..+++|..|.||+|+.|++..+|..++.|+ |+.|-+++|+ ++.+|..++-+..|.+|
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHh
Confidence 455667888888888888899999999999999999999999998888774 8888888865 88899999988899999
Q ss_pred eecCCccccccCccCCCCCCCCccCee
Q 047894 654 DIRGAKLLKEMPCGMKELKKLRTLSNF 680 (1087)
Q Consensus 654 ~l~~~~~~~~~p~~i~~L~~L~~L~~~ 680 (1087)
|.+.|. +..+|..++.+.+|+.|...
T Consensus 172 d~s~ne-i~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 172 DVSKNE-IQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hhhhhh-hhhchHHhhhHHHHHHHHHh
Confidence 998888 77888888888888877543
No 45
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.44 E-value=3.2e-07 Score=92.73 Aligned_cols=51 Identities=29% Similarity=0.423 Sum_probs=34.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVR 220 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~ 220 (1087)
+|+||+++.+++...+..... ...+.+.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~---~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQS---GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS--------EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHc---CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999952221 456899999999999999999998876544
No 46
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.43 E-value=7.6e-06 Score=91.62 Aligned_cols=196 Identities=15% Similarity=0.130 Sum_probs=109.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCC-eEEEEEeCCcccHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFD-VKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 244 (1087)
..++|++..++.+..++... ....+.++|++|+||||+|+.+.+..... .+. ..+.+++++..+. ....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~--~~~~~~~~i~~~~~~~~--~~~~ 84 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGD--PWENNFTEFNVADFFDQ--GKKY 84 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCc--ccccceEEechhhhhhc--chhh
Confidence 46899999999999888643 22357899999999999999998764311 111 2344444322110 0000
Q ss_pred HH------HHhhcC-CCCcccHHHHHHHHHHh---h--CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC
Q 047894 245 LL------ESITSA-ASDLKTLNEVQVQLKKA---V--DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN 312 (1087)
Q Consensus 245 i~------~~l~~~-~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~ 312 (1087)
+. ..+... .......+.....+... . .+.+-+||+||+..-....+..+...+......+++|+|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 00 000000 00011122222222211 1 234558999999665444444555444333445778877754
Q ss_pred c-cccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 313 S-NVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 313 ~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
. .+...+ .....+.+.+++.++...++.+.+...+.. ...+....|++.++|.+-.+..
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 222211 222568899999999999888866432221 2355677899999997766544
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=7.3e-07 Score=96.89 Aligned_cols=134 Identities=24% Similarity=0.441 Sum_probs=74.4
Q ss_pred CCCccEEEEeecCCccccCCCCCcccEEEeccCCCc-CCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccc
Q 047894 889 LPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKEL-ANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIA 967 (1087)
Q Consensus 889 l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 967 (1087)
+.+++.|++++|. +.. +| .+ .+|++|.+++|..+..+|..+ .++|+.|++++|..+.
T Consensus 51 ~~~l~~L~Is~c~-L~s----LP-----------~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~--- 108 (426)
T PRK15386 51 ARASGRLYIKDCD-IES----LP-----------VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS--- 108 (426)
T ss_pred hcCCCEEEeCCCC-Ccc----cC-----------CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc---
Confidence 5778889998882 221 11 12 268888888888777777644 4689999999987665
Q ss_pred cCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCC--cccCCCCCCCCCccEEEEecCCCC
Q 047894 968 RRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKL--ESIPDGLPNLKCLQSICIRKCPSL 1045 (1087)
Q Consensus 968 ~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~l~~c~~l 1045 (1087)
.+|++|+.|.+.. ..+..+ + ..+++|+.|.+.++... ..+|.. --++|++|++++|..+
T Consensus 109 --sLP~sLe~L~L~~-n~~~~L--------~------~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 109 --GLPESVRSLEIKG-SATDSI--------K------NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI 169 (426)
T ss_pred --ccccccceEEeCC-CCCccc--------c------cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence 3556777777642 221111 0 12334555555432211 011100 1145666666666644
Q ss_pred cccCCCCCCCCcCeEEEccC
Q 047894 1046 VSFPERGLPNTISAVYICEC 1065 (1087)
Q Consensus 1046 ~~lp~~~~~~sL~~L~i~~c 1065 (1087)
. +|+ ++|.+|+.|+++.|
T Consensus 170 ~-LP~-~LP~SLk~L~ls~n 187 (426)
T PRK15386 170 I-LPE-KLPESLQSITLHIE 187 (426)
T ss_pred c-Ccc-cccccCcEEEeccc
Confidence 3 332 35556666666543
No 48
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=7.8e-06 Score=89.63 Aligned_cols=180 Identities=17% Similarity=0.223 Sum_probs=116.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc---ccccCCCeEEEEEe-CCcccHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA---VRDSKFDVKAWVCV-SDVFDVLGIS 242 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-s~~~~~~~~~ 242 (1087)
+++|-+..++.+.+++.... -.....++|+.|+||||+|+.++...- ..+.|+|...|... +....+.+ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 57898888999999986542 335778999999999999999887431 12237777666552 22223333 2
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccc-ccc-C
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA-STM-G 320 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~-~~~-~ 320 (1087)
+++.+.+... -..+++-++|+|+++.-+...|..+...+.....++.+|++|.+.+.. ..+ .
T Consensus 79 r~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 2233322211 123456677888886666678888888887766788888888654321 111 1
Q ss_pred CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 321 PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 321 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
....+.+.++++++....+.+...+ ...+.+..++..++|.|.-+...
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND--------IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2257899999999998877654311 11234567899999988765443
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=8.8e-08 Score=92.76 Aligned_cols=81 Identities=28% Similarity=0.379 Sum_probs=21.6
Q ss_pred CCcccEEEecCCCCcccCccccCCccceeeccCCCcCccccccc-ccCCCCcEEEecCCCCCcccC--cccCCCCCcCEE
Q 047894 577 FKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPEST-CKLLNLEILILRNCSRLIKLP--PKMRNLINLNHL 653 (1087)
Q Consensus 577 ~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L 653 (1087)
+.+|++|+|++|.++.++ .+..+.+|++|++++|.|+.++..+ ..+++|+.|++++|. +..+- ..+..+++|++|
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCccee
Confidence 344555555555554442 3444555555555555555444333 234555555555443 22211 123344555555
Q ss_pred eecCCc
Q 047894 654 DIRGAK 659 (1087)
Q Consensus 654 ~l~~~~ 659 (1087)
++.+|.
T Consensus 119 ~L~~NP 124 (175)
T PF14580_consen 119 SLEGNP 124 (175)
T ss_dssp E-TT-G
T ss_pred eccCCc
Confidence 555554
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=1.9e-06 Score=90.08 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=99.9
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhh
Q 047894 171 REEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESIT 250 (1087)
Q Consensus 171 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 250 (1087)
.+..++++.+++.. .....+.|+|.+|+|||++|+.+++.... .....++++++...+. ..+
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~~---~~~------ 83 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQA---DPE------ 83 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHHh---HHH------
Confidence 44566777776542 22357899999999999999999886432 2233455554432110 001
Q ss_pred cCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHh-hHH-Hhhccccc-CCCCcEEEEEcCCccc---------ccc
Q 047894 251 SAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYS-LWV-DLKAPFLA-AEPNSKMIVTTRNSNV---------AST 318 (1087)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~~s~ilvTtr~~~v---------~~~ 318 (1087)
+...+.+ .-+|||||++..... .|. .+...+.. ...+..+|+|++.... ...
T Consensus 84 ---------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 84 ---------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 1111222 348999999654321 232 33332221 1234588888885321 112
Q ss_pred cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhh
Q 047894 319 MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGL 379 (1087)
Q Consensus 319 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~ 379 (1087)
+.....++++++++++...++...+-.... ....+....|++.+.|.|..+..+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 222357899999999999998775532211 223455677888899999877766443
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.41 E-value=5.5e-06 Score=81.84 Aligned_cols=183 Identities=21% Similarity=0.212 Sum_probs=98.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
-.+|+|.+.-++.+.-++......+ +...-+..||++|+||||||.-+++.... .| .+.+.+......++ ..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~-~~l~h~lf~GPPG~GKTTLA~IIA~e~~~---~~---~~~sg~~i~k~~dl-~~ 94 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRG-EALDHMLFYGPPGLGKTTLARIIANELGV---NF---KITSGPAIEKAGDL-AA 94 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTT-S---EEEEESSTTSSHHHHHHHHHHHCT-----E---EEEECCC--SCHHH-HH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcC-CCcceEEEECCCccchhHHHHHHHhccCC---Ce---EeccchhhhhHHHH-HH
Confidence 3579999988887655554321111 45677899999999999999999987542 33 22332211111111 11
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccc--------cCCCC-----------cE
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFL--------AAEPN-----------SK 305 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~--------~~~~~-----------s~ 305 (1087)
++. .+ +++-+|++|++..-....-+.+..+.- ..+++ +-
T Consensus 95 il~---------------------~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 95 ILT---------------------NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HHH---------------------T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HHH---------------------hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111 12 235577788886655433333333221 11222 23
Q ss_pred EEEEcCCcccccccCCC--ceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhc
Q 047894 306 MIVTTRNSNVASTMGPI--EHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLR 381 (1087)
Q Consensus 306 ilvTtr~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~ 381 (1087)
|=.|||...+...+... -..+++..+.+|-.++..+.+..- .-+..++.+.+|++++.|-|--+.-+-+..+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 33588876555444332 235799999999999998766322 1234567889999999999987776666554
No 52
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.2e-05 Score=88.38 Aligned_cols=175 Identities=17% Similarity=0.199 Sum_probs=118.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..+.+|+++++++...|...-.+ ..+.-+.|+|.+|+|||+.++.|.+.........+ +++|++-...+..+++..|
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKI 93 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHH
Confidence 34899999999999988765433 22234899999999999999999987654421222 7899999999999999999
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhhC--CCceEEEEecCCCCCHhhHHHhhcccccCC-CCcEEEE--EcCCcc------
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAVD--GKRFLLVLDDVWNEDYSLWVDLKAPFLAAE-PNSKMIV--TTRNSN------ 314 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~~s~ilv--Ttr~~~------ 314 (1087)
+++++..........+....+.+.+. ++.+++|||+++.-....-+.+..-+.... ..++|++ .+-+..
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99998555555666677777777774 578999999984432111122222222221 2344433 333222
Q ss_pred --cccccCCCceeeCCCCChHhHHHHHHHhhc
Q 047894 315 --VASTMGPIEHYNLKSLSDDDCWSIFIKHVF 344 (1087)
Q Consensus 315 --v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 344 (1087)
+....+.. .+..+|-+.+|-.+++..++-
T Consensus 174 ~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 174 PRVKSSLGPS-EIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhhccCcc-eeeeCCCCHHHHHHHHHHHHH
Confidence 22233333 378899999999999998874
No 53
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.5e-05 Score=92.71 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc------------------cCCCeE
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD------------------SKFDVK 227 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~ 227 (1087)
.+++|.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-.. +.|.-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 468999999999999986542 235667999999999999998876542110 011112
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccccCCCC
Q 047894 228 AWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPN 303 (1087)
Q Consensus 228 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 303 (1087)
+++..+.. ...++....+... ..++.-++|||++..-....|..++..+......
T Consensus 91 iEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22222211 1122222222211 2345568999999887777788887766554557
Q ss_pred cEEEEEcCCc-cccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh-HHHH
Q 047894 304 SKMIVTTRNS-NVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL-AAKT 375 (1087)
Q Consensus 304 s~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~ 375 (1087)
.++|+||.+. .+...+ ..-..+.++.++.++..+.+.+.+..... ....+....|++.++|..- |+..
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7877777653 332211 11257999999999999999887643221 2234566789999999664 5444
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.39 E-value=2.5e-07 Score=89.69 Aligned_cols=123 Identities=27% Similarity=0.262 Sum_probs=43.9
Q ss_pred CCCCcccEEEecCCCCcccCcccc-CCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccC-CCCCcCE
Q 047894 575 PKFKRLRMLSLQGYCIGELPIPFE-ELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMR-NLINLNH 652 (1087)
Q Consensus 575 ~~~~~Lr~L~l~~~~i~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-~L~~L~~ 652 (1087)
-+...+|.|+|.+|.|+.+ +.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|. +..++..+. .+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 3455789999999999887 4676 6889999999999999986 58889999999999977 777766553 6899999
Q ss_pred EeecCCccccccCc--cCCCCCCCCccCeeeeCccCCC----CCccccccccccc
Q 047894 653 LDIRGAKLLKEMPC--GMKELKKLRTLSNFIVGKRETA----SGLEDLKCLNFLC 701 (1087)
Q Consensus 653 L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~----~~~~~L~~L~~L~ 701 (1087)
|++++|. +..+.. .+..+++|+.|+....+..... ..+..++.|..|.
T Consensus 93 L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 9999998 544322 2456677777755433322111 1245566666654
No 55
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.39 E-value=6e-07 Score=95.58 Aligned_cols=292 Identities=19% Similarity=0.190 Sum_probs=188.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (1087)
..+.+.++|.|||||||++-.+.+ .. ..+-+.+.++......+...+.-.+...++-..... +.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 347899999999999999999988 22 224456777777777677666666666565543322 222334556667
Q ss_pred CCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccccccCCCceeeCCCCChH-hHHHHHHHhhcCCCC-C
Q 047894 272 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVASTMGPIEHYNLKSLSDD-DCWSIFIKHVFESRD-L 349 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~-~ 349 (1087)
++|.++|+||-..- ...-..+...+..+.+.-.|+.|+|..... .+.....+++|+.. ++.++|...+..... .
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999997221 112223344455566677889999865332 23345677777764 788998877644321 1
Q ss_pred CcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCCCHHHHHHHHhhhccCCC--------CCCChHHHHHhhhcCCchhhH
Q 047894 350 NAHQISESFRKKVVAKCGGLALAAKTLGGLLRTTRHDAWDDILESKIWDLP--------RQSGVLPVLRLSYHHLPSHLK 421 (1087)
Q Consensus 350 ~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~w~~~~~~~~~~~~--------~~~~i~~~l~~sy~~L~~~~k 421 (1087)
.-.........+|.++.+|.|++|...++..+.-...+...-+......+. ........+.+||.-|..-.+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 122334556788999999999999999998887755554443332211111 135567889999999999999
Q ss_pred HHHHHHccCCCCcccChhhhHHHhHhCCCcccCCchhhHHHHHHHHHHHHhhCCCCcccccCCcccEEEcHHHHHHHHHh
Q 047894 422 RCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELV 501 (1087)
Q Consensus 422 ~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~e~~~~~~~~~L~~~~l~~~~~~~~~~~~~~h~~v~~~~~~~ 501 (1087)
--|.-++.|...|.-. ...|.+-|-..... .......+..+++.+++-.........|+.-+-++.|+..+
T Consensus 243 ~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~-----~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 243 ALFGRLAVFVGGFDLG----LALAVAAGADVDVP-----RYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHhcchhhhhhhhccc----HHHHHhcCCccccc-----hHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999998776544 34455544322101 12223346778888888765544445677777777777655
Q ss_pred h
Q 047894 502 S 502 (1087)
Q Consensus 502 ~ 502 (1087)
-
T Consensus 314 L 314 (414)
T COG3903 314 L 314 (414)
T ss_pred H
Confidence 4
No 56
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=2.1e-06 Score=98.63 Aligned_cols=196 Identities=17% Similarity=0.154 Sum_probs=113.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
.+++|-+...+.|..++.... -...+.++|++|+||||+|+.+++...-.+ .+...+|.+.+... +..-...-
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~-~~~~~cg~C~sc~~-i~~~~h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSG-EDPKPCGECESCLA-VRRGAHPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccC-CCCCCCCcChhhHH-HhcCCCCc
Confidence 468999999999988887542 235679999999999999999987653221 12222333221100 00000000
Q ss_pred HHHhhcCCCCcccHHH---HHHHHHH-hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcC-CcccccccC
Q 047894 246 LESITSAASDLKTLNE---VQVQLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTR-NSNVASTMG 320 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr-~~~v~~~~~ 320 (1087)
+..+... .....+. +...+.. -..+++-++|+|+++......+..+...+......+.+|++|. ...+...+.
T Consensus 87 v~el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 87 VLEIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred eEEeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 0000000 0111222 2111111 1235667999999987766677777777665444555555554 334332222
Q ss_pred -CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHH
Q 047894 321 -PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAK 374 (1087)
Q Consensus 321 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 374 (1087)
....+++.+++.++...++.+.+...+.. ..++....|++.++|.+--+.
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~----i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGRE----AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 23579999999999999998876433221 234567789999999886543
No 57
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.5e-05 Score=89.02 Aligned_cols=180 Identities=14% Similarity=0.164 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc------------------cCCCeE
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD------------------SKFDVK 227 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~ 227 (1087)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++...-.. +.+.-.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999886542 235678999999999999999987542110 000011
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh-----hCCCceEEEEecCCCCCHhhHHHhhcccccCCC
Q 047894 228 AWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKA-----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEP 302 (1087)
Q Consensus 228 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 302 (1087)
.++..+.. ...++... +.+. ..+++-++|+|++..-....+..+...+.....
T Consensus 91 ~~~~~~~~---------------------~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~ 148 (363)
T PRK14961 91 IEIDAASR---------------------TKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQ 148 (363)
T ss_pred EEeccccc---------------------CCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCC
Confidence 11111110 11222111 1111 134556999999977766667777766665445
Q ss_pred CcEEEEEcCC-ccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 303 NSKMIVTTRN-SNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 303 ~s~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
..++|++|.+ ..+...+ +....+++++++.++..+.+...+...+. ...++.+..|++.++|.|-.+...
T Consensus 149 ~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 149 HIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred CeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6667776654 2332221 12257999999999999888876633221 123456677999999988754443
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.32 E-value=4.8e-06 Score=80.67 Aligned_cols=125 Identities=19% Similarity=0.172 Sum_probs=72.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHH
Q 047894 169 FGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLES 248 (1087)
Q Consensus 169 vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 248 (1087)
+|++..++.+...+.... .+.+.|+|.+|+|||++|+.+++.... .-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~------~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELPP------PKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAELFGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHHHhhhh
Confidence 478888999988886532 257899999999999999999987541 12345666655443322211111000
Q ss_pred hhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCH---hhHHHhhcccccC---CCCcEEEEEcCCcc
Q 047894 249 ITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY---SLWVDLKAPFLAA---EPNSKMIVTTRNSN 314 (1087)
Q Consensus 249 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~---~~~s~ilvTtr~~~ 314 (1087)
............++.++|+||++.... ..+......+... ..+..||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 011111223345678999999975322 2222222322221 35778888888653
No 59
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=7.9e-08 Score=101.55 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=50.2
Q ss_pred cCCcccEEEEecCCCccc----cCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCC
Q 047894 866 IFPRLHKLSIVECPKLSG----ELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSL 941 (1087)
Q Consensus 866 ~~~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 941 (1087)
.++.|+.|.++.| .+.. .+-..+|+|+.|.+..|..+.. .......+..|++|+|++|+++..-
T Consensus 195 ~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~-----------~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 195 LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILI-----------KATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccce-----------ecchhhhhhHHhhccccCCcccccc
Confidence 4677777777777 4431 1224567777777777642211 0112233456777888888766554
Q ss_pred chhhhcCCCCCceEEeccCC
Q 047894 942 PEEMMENNSQLEKLYIRDCE 961 (1087)
Q Consensus 942 ~~~~~~~l~~L~~L~l~~c~ 961 (1087)
.......++.|+.|.++.|.
T Consensus 263 ~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred cccccccccchhhhhccccC
Confidence 33344577788888877765
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=4.5e-06 Score=90.90 Aligned_cols=161 Identities=20% Similarity=0.388 Sum_probs=97.6
Q ss_pred CCcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhh
Q 047894 867 FPRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMM 946 (1087)
Q Consensus 867 ~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 946 (1087)
++++..|++++| .++ .+|...++|++|.+++|..+...... + ..+|+.|.+++|..+..+|
T Consensus 51 ~~~l~~L~Is~c-~L~-sLP~LP~sLtsL~Lsnc~nLtsLP~~-----------L--P~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIE-SLPVLPNELTEITIENCNNLTTLPGS-----------I--PEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred hcCCCEEEeCCC-CCc-ccCCCCCCCcEEEccCCCCcccCCch-----------h--hhhhhheEccCcccccccc----
Confidence 577888888888 777 67754457888888888665332111 1 1367888888885554444
Q ss_pred cCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCC
Q 047894 947 ENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPD 1026 (1087)
Q Consensus 947 ~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~ 1026 (1087)
++|+.|+++++. ...+ ..+|++|+.|.+.+...... ...+ ...+++|++|++++|... .+|.
T Consensus 112 ---~sLe~L~L~~n~-~~~L--~~LPssLk~L~I~~~n~~~~---------~~lp--~~LPsSLk~L~Is~c~~i-~LP~ 173 (426)
T PRK15386 112 ---ESVRSLEIKGSA-TDSI--KNVPNGLTSLSINSYNPENQ---------ARID--NLISPSLKTLSLTGCSNI-ILPE 173 (426)
T ss_pred ---cccceEEeCCCC-Cccc--ccCcchHhheeccccccccc---------cccc--cccCCcccEEEecCCCcc-cCcc
Confidence 457777776432 2222 25677777776643211100 0001 123478999999988866 3454
Q ss_pred CCCCCCCccEEEEecCCCC-cccCCCCCCCCcCeEEEccCCC
Q 047894 1027 GLPNLKCLQSICIRKCPSL-VSFPERGLPNTISAVYICECDK 1067 (1087)
Q Consensus 1027 ~l~~l~~L~~L~l~~c~~l-~~lp~~~~~~sL~~L~i~~c~~ 1067 (1087)
.+. .+|+.|+++.+... -.++...+|+++ .|.+.+|-.
T Consensus 174 ~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 174 KLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred ccc--ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence 443 68888888764311 134555667778 888887743
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=5.5e-07 Score=103.16 Aligned_cols=104 Identities=35% Similarity=0.462 Sum_probs=90.5
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCc-cceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCE
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELR-LLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNH 652 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 652 (1087)
+..++.+..|++.++.+..+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 3455789999999999999998888885 9999999999999999889999999999999976 8889987779999999
Q ss_pred EeecCCccccccCccCCCCCCCCccCe
Q 047894 653 LDIRGAKLLKEMPCGMKELKKLRTLSN 679 (1087)
Q Consensus 653 L~l~~~~~~~~~p~~i~~L~~L~~L~~ 679 (1087)
|++++|. +..+|..++.+..|+++..
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDL 216 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhh
Confidence 9999998 7888877666666777754
No 62
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.29 E-value=0.00013 Score=86.73 Aligned_cols=203 Identities=18% Similarity=0.194 Sum_probs=117.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCC---CeEEEEEeCCc---ccHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKF---DVKAWVCVSDV---FDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~---~~~~ 239 (1087)
+.++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++...... .+ ...-|+.+... .+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~-~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLK-HTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhcc-CCcccCCCCeEEEechhccCCHH
Confidence 45889999999888877432 235689999999999999999987653222 22 12345554421 1111
Q ss_pred HHHHHH---------------HHHhhcCC----------------CCcccH-HHHHHHHHHhhCCCceEEEEecCCCCCH
Q 047894 240 GISKAL---------------LESITSAA----------------SDLKTL-NEVQVQLKKAVDGKRFLLVLDDVWNEDY 287 (1087)
Q Consensus 240 ~~~~~i---------------~~~l~~~~----------------~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~ 287 (1087)
.+...+ +...+... ++...+ ...+..+.+.++++++.++-|+.|..+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 111111 11111000 011111 2356778888888999999888877766
Q ss_pred hhHHHhhcccccCCCCcEEEE--EcCCccc-ccccC-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHH
Q 047894 288 SLWVDLKAPFLAAEPNSKMIV--TTRNSNV-ASTMG-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVV 363 (1087)
Q Consensus 288 ~~~~~l~~~l~~~~~~s~ilv--Ttr~~~v-~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~ 363 (1087)
..|..+...+....+...|++ ||++... ...+. ....+.+.+++.+|.+.++.+.+..... ...+++...|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v----~ls~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV----HLAAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHH
Confidence 677777766665555555555 5664332 11111 1246788999999999999987642211 11233444555
Q ss_pred HHhCCchhHHHHHHhh
Q 047894 364 AKCGGLALAAKTLGGL 379 (1087)
Q Consensus 364 ~~c~g~PLai~~~~~~ 379 (1087)
+.+..-+-|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 5554445555544433
No 63
>PF13173 AAA_14: AAA domain
Probab=98.29 E-value=2.3e-06 Score=79.88 Aligned_cols=119 Identities=21% Similarity=0.256 Sum_probs=78.9
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
+++.|.|+.|+||||++++++.+.. ....+++++..+.........+ ....+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccC
Confidence 6899999999999999999998643 2245677777665332110000 122233333347
Q ss_pred ceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccccc------cCCCceeeCCCCChHhH
Q 047894 274 RFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVAST------MGPIEHYNLKSLSDDDC 335 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 335 (1087)
+.+|+||++... ..|......+.+..+..+|++|+........ .+....++|.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999655 5687777777766567899999987654421 12224688999987763
No 64
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.6e-05 Score=94.39 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=113.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc------------------cCCCeE
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD------------------SKFDVK 227 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~ 227 (1087)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-.. +.|.-.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999999887542 235568999999999999999987643110 001111
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHH-HhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEE
Q 047894 228 AWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLK-KAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKM 306 (1087)
Q Consensus 228 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 306 (1087)
+++.......+. ...++...+. ....+++-++|||++..-....+..++..+-......++
T Consensus 91 iEidAas~~kVD------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKVD------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222111111111 1111221111 112467779999999877777777777766544445666
Q ss_pred EEEcCC-cccccc-cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 307 IVTTRN-SNVAST-MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 307 lvTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
|++|.+ ..+... ......|++++++.++...++.+.+-... .....+....|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 665554 333322 11225799999999999999887663321 1223456678999999988755444
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.7e-05 Score=89.12 Aligned_cols=196 Identities=17% Similarity=0.184 Sum_probs=113.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCC-eEEEEEeCCcccHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFD-VKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 244 (1087)
.+++|-+..+..+...+.... -...+.++|+.|+||||+|+.+++...-.. ... ...+..+.... ....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~-~~~~~~~~~~C~~C~----~C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSA-LITENTTIKTCEQCT----NCIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCcc-ccccCcCcCCCCCCh----HHHH
Confidence 468999999999888776542 235688999999999999999987542110 000 00000000000 0001
Q ss_pred HHHHhhc-----CCCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEE-EcCCcc
Q 047894 245 LLESITS-----AASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIV-TTRNSN 314 (1087)
Q Consensus 245 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilv-Ttr~~~ 314 (1087)
+...... ........+++...+... ..+++-++|+|+++.-....|..+...+......+.+|+ ||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 1000000 000111223332222211 246677999999988777778888777665445566554 555444
Q ss_pred cccccC-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 315 VASTMG-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 315 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
+...+. ....+.+.+++.++...++.+.+...+. ....+....|++.++|.+--+..
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 443222 2256899999999999999887743322 12345567799999998765433
No 66
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.9e-07 Score=98.75 Aligned_cols=183 Identities=14% Similarity=0.147 Sum_probs=112.5
Q ss_pred ccCCcccEEEEecCCCccc----cCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCC
Q 047894 865 EIFPRLHKLSIVECPKLSG----ELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKS 940 (1087)
Q Consensus 865 ~~~~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~ 940 (1087)
..+.+|+.+.+.+|+ +.. .....+|+++.|+++.+=-. +.. ....-+.+|++|+.|+++.|.....
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~--------nw~-~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFH--------NWF-PVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHH--------hHH-HHHHHHHhcccchhcccccccccCC
Confidence 347889999999883 321 12346889999999886100 000 0113456788888888888876544
Q ss_pred CchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCC
Q 047894 941 LPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRK 1020 (1087)
Q Consensus 941 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 1020 (1087)
........+++|+.|.++.|..- +. .+. + .+..||+|+.|+++.|.....-......+..|+.|+|++|++
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls--~k--~V~----~-~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLS--WK--DVQ----W-ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred ccccchhhhhhhheEEeccCCCC--HH--HHH----H-HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 43333346788888888888721 11 000 0 234567888888887753333333345567788888888877
Q ss_pred Cccc-CCCCCCCCCccEEEEecCCCCcccC--CC------CCCCCcCeEEEccCCC
Q 047894 1021 LESI-PDGLPNLKCLQSICIRKCPSLVSFP--ER------GLPNTISAVYICECDK 1067 (1087)
Q Consensus 1021 ~~~~-p~~l~~l~~L~~L~l~~c~~l~~lp--~~------~~~~sL~~L~i~~c~~ 1067 (1087)
.... ..-...++.|..|+++.| .+.++- +. ...++|+.|+|..|+.
T Consensus 259 i~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 259 IDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence 6432 134567788888888774 344332 22 2345788888888775
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.8e-05 Score=90.74 Aligned_cols=181 Identities=17% Similarity=0.152 Sum_probs=112.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-----------------------c
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-----------------------S 222 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-----------------------~ 222 (1087)
.++||-+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-.. +
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 468999999999999997653 235678999999999999999876542100 0
Q ss_pred CCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccc
Q 047894 223 KFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFL 298 (1087)
Q Consensus 223 ~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 298 (1087)
.|.-.+++.... ....++....+... ..++.-++|||++..-....+..+...+-
T Consensus 91 ~hpDviEIdAas---------------------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 91 RFVDYIEMDAAS---------------------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCCcceEecccc---------------------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 000111221111 11223322222221 24566799999998777777887777665
Q ss_pred cCCCCcEEEE-EcCCcccccccC-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 299 AAEPNSKMIV-TTRNSNVASTMG-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 299 ~~~~~s~ilv-Ttr~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
....+.++|+ ||....+...+. .-..+.++.++.++..+.+.+.+..... ....+....|++.++|.|.....+
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi----~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI----AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4444555555 444444432221 1257899999999999988876633221 122345677999999999765544
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.6e-05 Score=89.76 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=112.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+++...-.. |+... .+..-...+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~-------~~~~~-pCg~C~sC~~I 81 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET-------GVTST-PCEVCATCKAV 81 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc-------CCCCC-CCccCHHHHHH
Confidence 468999999999999997542 236789999999999999999877532110 11000 00000000111
Q ss_pred HHHhhc-----CCCCcccHHHHHHHHHH----hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCc-cc
Q 047894 246 LESITS-----AASDLKTLNEVQVQLKK----AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNS-NV 315 (1087)
Q Consensus 246 ~~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~-~v 315 (1087)
...-.. ........++....+.. -..+++-++|+|++..-....+..+...+.....+.++|++|.+. .+
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 000000 00001122222221111 123566799999997766666777766665444566777776542 22
Q ss_pred ccc-cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 316 AST-MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 316 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
... ......+++++++.++....+.+.+...+. ....+....|++.++|.+..+..+
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 211 122357999999999999988877643322 223456678999999988655443
No 69
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.4e-06 Score=68.99 Aligned_cols=56 Identities=32% Similarity=0.440 Sum_probs=30.3
Q ss_pred cccEEEecCCCCcccC-ccccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCC
Q 047894 579 RLRMLSLQGYCIGELP-IPFEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNC 634 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 634 (1087)
+|++|++++|.+..+| ..|..+++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555555554 345555555555555555555532 4555555555555554
No 70
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=5.2e-05 Score=83.23 Aligned_cols=199 Identities=16% Similarity=0.184 Sum_probs=116.0
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-cCCCeEEEEEeCCcccHHHHH
Q 047894 164 TEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-SKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
.-..++|.++..+.+...+.... ....+.|+|+.|+||||+|..+.+..--.. ..+... ............
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 44678999999999999997653 335789999999999999998877542110 001111 000011111122
Q ss_pred HHHHHH-------hhcCC-------CCcccHHHHHHHHHHhh-----CCCceEEEEecCCCCCHhhHHHhhcccccCCCC
Q 047894 243 KALLES-------ITSAA-------SDLKTLNEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPN 303 (1087)
Q Consensus 243 ~~i~~~-------l~~~~-------~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 303 (1087)
+.+... +..+. ...-..++.. .+.+.+ .+++-++|+|++..-+......+...+.....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 222221 10000 0111233332 333333 356779999999887776777776666543334
Q ss_pred cE-EEEEcCCcccccccC-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 304 SK-MIVTTRNSNVASTMG-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 304 s~-ilvTtr~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
.. |++|++...+..... ....+.+.+++.++..+++.+... ... ..++....|++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~-~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGS-SQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhc-ccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 445544433332221 125799999999999999987431 111 223456789999999998766544
No 71
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.21 E-value=1.9e-06 Score=89.21 Aligned_cols=88 Identities=22% Similarity=0.188 Sum_probs=61.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc--ccHHHHHHHHHHHhhcCCCCcccHH------HHHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV--FDVLGISKALLESITSAASDLKTLN------EVQVQ 265 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 265 (1087)
..+.|+|++|+|||||++.++++.... +|+..+|+.+.+. .++.++++.+...+-....+..... .....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~--~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN--HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc--cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999986533 8999999997776 7888888888443332222211111 11112
Q ss_pred HHHh-hCCCceEEEEecCC
Q 047894 266 LKKA-VDGKRFLLVLDDVW 283 (1087)
Q Consensus 266 l~~~-l~~kr~LlVlDdv~ 283 (1087)
.... -.++++++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2221 25899999999993
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.21 E-value=3.9e-05 Score=85.20 Aligned_cols=182 Identities=14% Similarity=0.147 Sum_probs=106.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEe--CCcccHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCV--SDVFDVLGISK 243 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~ 243 (1087)
.+++|+++.++.+.+++.... ...+.++|.+|+||||+|+.+++..... .+. ..++.+ +...... ...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~------~~~~ll~G~~G~GKt~~~~~l~~~l~~~--~~~-~~~i~~~~~~~~~~~-~~~ 86 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN------MPHLLFAGPPGTGKTTAALALARELYGE--DWR-ENFLELNASDERGID-VIR 86 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHcCC--ccc-cceEEeccccccchH-HHH
Confidence 458999999999999886432 2357999999999999999998764322 121 122222 2211111 111
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCc-cccccc-CC
Q 047894 244 ALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNS-NVASTM-GP 321 (1087)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~-~v~~~~-~~ 321 (1087)
+.+..+....+ .....+-++++|++..-....+..+...+......+.+|+++... .+.... ..
T Consensus 87 ~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 11111111000 001345689999986655444555555554444456777766432 221111 12
Q ss_pred CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 322 IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 322 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
...+.++++++++...++...+..... ...++....+++.++|.+.-+..
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 246889999999998888887643322 12345677899999998776433
No 73
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.5e-05 Score=89.15 Aligned_cols=194 Identities=14% Similarity=0.110 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++...-.. .... ..+..... ...+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-~~~~---~pCg~C~s----C~~i 84 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCEN-PIGN---EPCNECTS----CLEI 84 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCccc-ccCc---cccCCCcH----HHHH
Confidence 468999999999999887542 224678999999999999999987643211 0000 00011111 1111
Q ss_pred HHHhhcC--------CCCcccHHHHHHHHHHh-hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEE-EcCCccc
Q 047894 246 LESITSA--------ASDLKTLNEVQVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIV-TTRNSNV 315 (1087)
Q Consensus 246 ~~~l~~~--------~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilv-Ttr~~~v 315 (1087)
....... .....+..++...+... ..++.-++|+|++..-....+..+...+-.......+|+ ||....+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 1111100 00111122222222211 245667999999988777778888776654333455444 4444444
Q ss_pred ccccC-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 316 ASTMG-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 316 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
...+. ....|.+.+++.++..+.+.+.+...+. ....+....|++.++|.+.-+..+
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHHHHH
Confidence 33222 2256999999999998888877643221 223456788999999988654443
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.20 E-value=3.3e-05 Score=84.89 Aligned_cols=183 Identities=13% Similarity=0.136 Sum_probs=105.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCC-eEEEEEeCCcccHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFD-VKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 244 (1087)
.+++|.++.++.|.+++... ....+.++|++|+||||+|+.+++...-. .|. .++-++.++..... ..++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~eln~sd~~~~~-~vr~ 83 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGP--NYKEAVLELNASDDRGID-VVRN 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhcc--cCccceeeecccccccHH-HHHH
Confidence 46889988888888877543 22346799999999999999998764211 221 12222222222211 1222
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCc-cccccc-CCC
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNS-NVASTM-GPI 322 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~-~v~~~~-~~~ 322 (1087)
++..+...... .-.++.-++|+|+++.-.......+...+......+++++++... .+.... ...
T Consensus 84 ~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 84 KIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 22211110000 002456699999997766555555554443333456777766432 222111 112
Q ss_pred ceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHH
Q 047894 323 EHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAK 374 (1087)
Q Consensus 323 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 374 (1087)
..++++++++++....+...+-..+.. ...+....|++.++|..-.+.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~----i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVP----YVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 468999999999999988876432221 224566789999998765443
No 75
>PRK08727 hypothetical protein; Validated
Probab=98.18 E-value=3e-05 Score=80.70 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=88.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.|+|..|+|||+|++.+++..... ...+.++++.. ....+.+ .+. .+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~---~~~~~y~~~~~------~~~~~~~-----------------~~~-~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA---GRSSAYLPLQA------AAGRLRD-----------------ALE-AL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEeHHH------hhhhHHH-----------------HHH-HH-hc
Confidence 459999999999999999998864322 22455665332 1111110 111 11 23
Q ss_pred ceEEEEecCCCCC-HhhHHHhhccccc--CCCCcEEEEEcCCcc---------cccccCCCceeeCCCCChHhHHHHHHH
Q 047894 274 RFLLVLDDVWNED-YSLWVDLKAPFLA--AEPNSKMIVTTRNSN---------VASTMGPIEHYNLKSLSDDDCWSIFIK 341 (1087)
Q Consensus 274 r~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~~s~ilvTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 341 (1087)
..+||+||+.... ...|....-.+.. ...|..||+|++... ....+.....+++++++.++-..++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3599999995432 1233322212221 134667999998521 112333345789999999999999998
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHHhCCchhHH
Q 047894 342 HVFESRDLNAHQISESFRKKVVAKCGGLALAA 373 (1087)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 373 (1087)
++.... -...+++..-|++.++|-.-.+
T Consensus 174 ~a~~~~----l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRG----LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcC----CCCCHHHHHHHHHhCCCCHHHH
Confidence 775422 1233556677888888766555
No 76
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.5e-05 Score=87.92 Aligned_cols=185 Identities=17% Similarity=0.150 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc------------------cCCCeE
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD------------------SKFDVK 227 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~ 227 (1087)
.+++|.+..++.+..++.... ....+.++|+.|+||||+|+.+++...-.. +.|.-.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999999886542 235678999999999999999976432100 011122
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEE
Q 047894 228 AWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKM 306 (1087)
Q Consensus 228 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 306 (1087)
+++.......+. +..++...+.. -..+++-++|+|++..-....+..+...+-.....+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 222221111111 11122222221 12456779999999776666777777766654445555
Q ss_pred EE-EcCCcccccc-cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh-HHHHHH
Q 047894 307 IV-TTRNSNVAST-MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL-AAKTLG 377 (1087)
Q Consensus 307 lv-Ttr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~ 377 (1087)
|+ ||....+... ......+++++++.++....+.+.+...+ -...++....|++.++|.+- |+..+-
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg----i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN----INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 54 5443333322 12236799999999998888877553221 12234556779999999665 444443
No 77
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=6.2e-05 Score=83.12 Aligned_cols=195 Identities=16% Similarity=0.153 Sum_probs=112.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc-CCC------eEEEEEeCCcc
Q 047894 164 TEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDS-KFD------VKAWVCVSDVF 236 (1087)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~-~f~------~~~wv~~s~~~ 236 (1087)
.-.+++|.+..++.+.+.+.... -...+.++|+.|+||+|+|..+.+..--... ... ....++ ...
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~c 89 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PDH 89 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CCC
Confidence 34579999999999999987653 2356889999999999999887654311000 000 000000 000
Q ss_pred cHHHHHHHHHHHh-------hcC--C-----CCcccHHHHHHHHHHhh-----CCCceEEEEecCCCCCHhhHHHhhccc
Q 047894 237 DVLGISKALLESI-------TSA--A-----SDLKTLNEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPF 297 (1087)
Q Consensus 237 ~~~~~~~~i~~~l-------~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l 297 (1087)
...+.+...- ... . ...-..++. +.+.+.+ .+++-++|+||+...+......+...+
T Consensus 90 ---~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L 165 (365)
T PRK07471 90 ---PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL 165 (365)
T ss_pred ---hHHHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH
Confidence 0111111000 000 0 011123332 2233333 356779999999887777777777766
Q ss_pred ccCCCCcEEEEEcCCc-cccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 298 LAAEPNSKMIVTTRNS-NVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 298 ~~~~~~s~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
.....++.+|++|... .+...+ .....+.+.+++.++..+++...... .. .+....+++.++|.|+.+..
T Consensus 166 Eepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 166 EEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALR 237 (365)
T ss_pred hcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHH
Confidence 6544566666666654 332221 22257999999999999999875311 01 11225789999999987665
Q ss_pred HH
Q 047894 376 LG 377 (1087)
Q Consensus 376 ~~ 377 (1087)
+.
T Consensus 238 ll 239 (365)
T PRK07471 238 LA 239 (365)
T ss_pred Hh
Confidence 53
No 78
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.17 E-value=3e-05 Score=80.21 Aligned_cols=158 Identities=17% Similarity=0.186 Sum_probs=98.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 270 (1087)
....-+.+||++|+||||||+.+....+... ..||..|......+-.+++.++... ...+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S-----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l 219 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS-----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSL 219 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc-----eEEEEEeccccchHHHHHHHHHHHH---------------HHhh
Confidence 3456678999999999999999998754321 5677777654444445555554332 1235
Q ss_pred CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEE--EcCCccccc---ccCCCceeeCCCCChHhHHHHHHHhhc-
Q 047894 271 DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIV--TTRNSNVAS---TMGPIEHYNLKSLSDDDCWSIFIKHVF- 344 (1087)
Q Consensus 271 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilv--Ttr~~~v~~---~~~~~~~~~l~~L~~~~~~~lf~~~~~- 344 (1087)
.++|.+|++|.|..-+..+.+. .++.-.+|.-++| ||.+....- .+..-.++.|++|..++...++.+..-
T Consensus 220 ~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 6889999999996544332222 2333456777776 555554321 122236799999999999998887432
Q ss_pred -C-CCC---CCcc---hhhHHHHHHHHHHhCCchh
Q 047894 345 -E-SRD---LNAH---QISESFRKKVVAKCGGLAL 371 (1087)
Q Consensus 345 -~-~~~---~~~~---~~~~~~~~~i~~~c~g~PL 371 (1087)
+ ... .-++ .....+..-++..|.|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1 111 1111 2344566677778888554
No 79
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=2.2e-06 Score=102.65 Aligned_cols=92 Identities=25% Similarity=0.352 Sum_probs=82.4
Q ss_pred cccEEEecCCCCc-ccCccccCCccceeeccCCCcCc-ccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeec
Q 047894 579 RLRMLSLQGYCIG-ELPIPFEELRLLRFLNLADIDIK-SLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIR 656 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 656 (1087)
.++.|+|++|.+. .+|..|+.+.+|++|+|++|.+. .+|..++.+.+|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4888999999984 67999999999999999999997 889999999999999999998777899999999999999999
Q ss_pred CCccccccCccCCC
Q 047894 657 GAKLLKEMPCGMKE 670 (1087)
Q Consensus 657 ~~~~~~~~p~~i~~ 670 (1087)
+|.....+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99866678877654
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=3.9e-05 Score=79.92 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=91.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.|+|+.|+|||+|++.+++.... .-..+.++.+..... ...+....+. +
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~--------------------~~~~~~~~~~-----~ 97 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW--------------------FVPEVLEGME-----Q 97 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh--------------------hhHHHHHHhh-----h
Confidence 47899999999999999999886432 223455665542100 0011111111 1
Q ss_pred ceEEEEecCCCCC-HhhHHHhh-ccccc-CCCC-cEEEEEcCCc---------ccccccCCCceeeCCCCChHhHHHHHH
Q 047894 274 RFLLVLDDVWNED-YSLWVDLK-APFLA-AEPN-SKMIVTTRNS---------NVASTMGPIEHYNLKSLSDDDCWSIFI 340 (1087)
Q Consensus 274 r~LlVlDdv~~~~-~~~~~~l~-~~l~~-~~~~-s~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 340 (1087)
--++++||+.... ...|.... ..+.. ...| .++|+||+.. ...+++.....++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2489999995432 13444322 22221 1123 4799999854 222344555789999999999999988
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhh
Q 047894 341 KHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGL 379 (1087)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~ 379 (1087)
+++.... -...+++..-|++.+.|..-++..+-..
T Consensus 178 ~~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 178 LRARLRG----FELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 7663321 1234567778889988877665554433
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=98.13 E-value=4.3e-05 Score=79.48 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=92.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.|+|..|+|||+|++.+++....+ -..++|++...- ... .. .+.+.+.+-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~~------~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAEL------LDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHHH------Hhh--------------hH----HHHHhhhhC
Confidence 568999999999999999998754321 234566664321 111 01 122222222
Q ss_pred ceEEEEecCCCCC-HhhHHH-hhccccc-CCCCcEEEEEcCCccc---------ccccCCCceeeCCCCChHhHHHHHHH
Q 047894 274 RFLLVLDDVWNED-YSLWVD-LKAPFLA-AEPNSKMIVTTRNSNV---------ASTMGPIEHYNLKSLSDDDCWSIFIK 341 (1087)
Q Consensus 274 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~~s~ilvTtr~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~ 341 (1087)
-++|+||+.... ...|.. +...+.. ...|..||+|++.... .+++.....++++++++++-..++..
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 278899995331 124433 3332221 2346788888875321 12233345789999999999999986
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhh
Q 047894 342 HVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLL 380 (1087)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 380 (1087)
++.... -...+++..-|++.+.|..-++..+-..|
T Consensus 178 ka~~~~----~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG----LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 664321 12235677788888888776665554433
No 82
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.12 E-value=6.5e-05 Score=75.68 Aligned_cols=91 Identities=20% Similarity=0.253 Sum_probs=62.7
Q ss_pred CCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCc-cccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCC
Q 047894 272 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNS-NVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDL 349 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 349 (1087)
+.+-++|+||+..-....+..+...+......+.+|++|++. .+...+ .....+.+.+++.++..+++.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 556789999997766666777777665544566677666543 222211 12257999999999998888776 1
Q ss_pred CcchhhHHHHHHHHHHhCCchhH
Q 047894 350 NAHQISESFRKKVVAKCGGLALA 372 (1087)
Q Consensus 350 ~~~~~~~~~~~~i~~~c~g~PLa 372 (1087)
..++.+..|++.++|.|..
T Consensus 169 ----i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 ----ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred ----CCHHHHHHHHHHcCCCccc
Confidence 1245678899999998853
No 83
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.12 E-value=7.4e-05 Score=84.25 Aligned_cols=185 Identities=17% Similarity=0.192 Sum_probs=109.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-------------------cCCCe
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-------------------SKFDV 226 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~~f~~ 226 (1087)
..++|.+..++.+.+++.... -...+.++|++|+||||+|+.+.+...-.. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 468999999999999886542 235788999999999999988876532100 12322
Q ss_pred EEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEE
Q 047894 227 KAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKM 306 (1087)
Q Consensus 227 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 306 (1087)
.++......... -.+++.+.+... -..+++-++|+|++..-.......+...+......+.+
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 222222111111 112222221110 12345568999998665545566666666443445666
Q ss_pred EEEcCCcc-ccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 307 IVTTRNSN-VASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 307 lvTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
|++|.+.. +...+ .....+++.++++++...++...+-..+. ...++.+..|++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI----KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 66664432 22211 12256888999999998888886643221 1234567789999999987665543
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=6e-05 Score=83.92 Aligned_cols=183 Identities=15% Similarity=0.144 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCcEEEEEEecCCChHHHHHHHHhcccccc------------------ccC
Q 047894 166 PEVFGREEDKAKILDMVLADTPR----DHPNFVVIPIVGMGGIGKTTLAREVYNDKAVR------------------DSK 223 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~----~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~------------------~~~ 223 (1087)
..++|-+..++.|..++...... ...-...+.++|++|+|||++|+.+.+..--. +.|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889999999999999765310 00134678899999999999999886532110 112
Q ss_pred CCeEEEEEeC-CcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-hhCCCceEEEEecCCCCCHhhHHHhhcccccCC
Q 047894 224 FDVKAWVCVS-DVFDVLGISKALLESITSAASDLKTLNEVQVQLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAE 301 (1087)
Q Consensus 224 f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 301 (1087)
.|.. ++... ....+.+ ..++...+.. -..+++-++|+|++..-.......+...+....
T Consensus 85 pD~~-~i~~~~~~i~i~~------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 85 PDVR-VVAPEGLSIGVDE------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CCEE-EeccccccCCHHH------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 2221 11111 0111111 1111111111 123455688889997776666666666665444
Q ss_pred CCcEEEEEcCC-ccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 302 PNSKMIVTTRN-SNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 302 ~~s~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
.+..+|++|.+ ..+...+ .....+.+.+++.++....+..... ...+.+..+++.++|.|.....+
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 56666665555 3333222 2225799999999999888874321 11344677999999999766544
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.12 E-value=2.8e-05 Score=93.06 Aligned_cols=174 Identities=22% Similarity=0.246 Sum_probs=97.9
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKA---KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~---~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
.+|+|.+..+. .+.+++... ....+.++|++|+||||+|+.+++... . .|. .++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~~~--~-~f~---~lna~~-~~i~--- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANHTR--A-HFS---SLNAVL-AGVK--- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHhc--C-cce---eehhhh-hhhH---
Confidence 46889888764 455555432 334678999999999999999997643 1 331 111110 0010
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhh--CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc----cc
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAV--DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN----VA 316 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~----v~ 316 (1087)
+..+......+.+ .+++.++||||++.-....++.+...+. .|..+++++..+. +.
T Consensus 92 ---------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 92 ---------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ---------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 0111111111111 2467899999997665555666554332 3555555433222 11
Q ss_pred ccc-CCCceeeCCCCChHhHHHHHHHhhcCCC---CCCcchhhHHHHHHHHHHhCCchhHH
Q 047894 317 STM-GPIEHYNLKSLSDDDCWSIFIKHVFESR---DLNAHQISESFRKKVVAKCGGLALAA 373 (1087)
Q Consensus 317 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~~~~~i~~~c~g~PLai 373 (1087)
... .....+.+++++.++...++.+.+-... ........+++...|++.+.|..-.+
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 111 1235789999999999999987653100 00112233556678888888865533
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.11 E-value=4.4e-05 Score=79.71 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=87.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.|+|..|+|||+||+.+++..... .. ...+++...... . + .. ...
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~--~~-~~~~i~~~~~~~------~----~------------------~~-~~~ 90 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYG--GR-NARYLDAASPLL------A----F------------------DF-DPE 90 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CC-cEEEEehHHhHH------H----H------------------hh-ccc
Confidence 578999999999999999999864322 11 234444332110 0 0 01 123
Q ss_pred ceEEEEecCCCCCHhhHHHhhccccc-CCCCc-EEEEEcCCccccc--------ccCCCceeeCCCCChHhHHHHHHHhh
Q 047894 274 RFLLVLDDVWNEDYSLWVDLKAPFLA-AEPNS-KMIVTTRNSNVAS--------TMGPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~~s-~ilvTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
.-+||+||+...+...-..+...+.. ...+. .||+|++...... .+.....+.++++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 44799999964432222233333322 12333 4666666432211 22223578999999988766666543
Q ss_pred cCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhh
Q 047894 344 FESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLL 380 (1087)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 380 (1087)
-. .. ....+++...+++.+.|.+..+..+...+
T Consensus 171 ~~-~~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AE-RG---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HH-cC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 21 11 12334567788889999999887766654
No 87
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=6.2e-05 Score=77.49 Aligned_cols=141 Identities=15% Similarity=0.141 Sum_probs=87.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
+.+.|+|.+|+|||+|++.+++.... .+++.. .+..++... +.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~--------~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDA--------LLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCC--------EEecHH------HcchHHHHh---------------------hhc-
Confidence 56899999999999999998875321 133221 111111111 111
Q ss_pred ceEEEEecCCCC--CHhhHHHhhcccccCCCCcEEEEEcCC---------cccccccCCCceeeCCCCChHhHHHHHHHh
Q 047894 274 RFLLVLDDVWNE--DYSLWVDLKAPFLAAEPNSKMIVTTRN---------SNVASTMGPIEHYNLKSLSDDDCWSIFIKH 342 (1087)
Q Consensus 274 r~LlVlDdv~~~--~~~~~~~l~~~l~~~~~~s~ilvTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 342 (1087)
-+|++||+... +...+-.+...+. ..|..||+|++. +.....+.....++++++++++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999542 2233333333222 346789998874 233344555678999999999999999988
Q ss_pred hcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 343 VFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
+-.. . -...+++..-|++.+.|..-++..+-
T Consensus 166 ~~~~-~---~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 166 FADR-Q---LYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHc-C---CCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 7432 1 12335677778888888777766533
No 88
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=7.6e-05 Score=85.28 Aligned_cols=188 Identities=16% Similarity=0.185 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc------------------CCCeE
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDS------------------KFDVK 227 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~------------------~f~~~ 227 (1087)
.+++|.+.....|...+.... -...+.++|++|+||||+|+.+++....... .+...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999988888888776542 2356789999999999999999775321100 00011
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEE
Q 047894 228 AWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMI 307 (1087)
Q Consensus 228 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~il 307 (1087)
..+..+.......+ +++.+.... ....+++-++|+|++..-.......+...+........+|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 22222211111111 111111110 0123566799999996554445555655554433334444
Q ss_pred E-EcCCccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCC-chhHHHHHHhh
Q 047894 308 V-TTRNSNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGG-LALAAKTLGGL 379 (1087)
Q Consensus 308 v-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~~~~~ 379 (1087)
+ |+....+...+ .....+.+.+++.++....+.+.+..... ...+++...|++.++| .+.|+..+-.+
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4 44333333322 22357899999999998888887643221 2234566778888865 45666666553
No 89
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.09 E-value=7.6e-05 Score=76.60 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=94.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDG 272 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (1087)
...+.|+|..|+|||+|.+.+++...... .-..+++++ ..+....+...+.. ...++ +.+.++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~------~~~f~~~~~~~~~~-----~~~~~----~~~~~~- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLS------AEEFIREFADALRD-----GEIEE----FKDRLR- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEE------HHHHHHHHHHHHHT-----TSHHH----HHHHHC-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeec------HHHHHHHHHHHHHc-----ccchh----hhhhhh-
Confidence 34578999999999999999998754322 112345554 34455555555543 12222 333333
Q ss_pred CceEEEEecCCCCCH-hhHHHhhccccc--CCCCcEEEEEcCCcc---------cccccCCCceeeCCCCChHhHHHHHH
Q 047894 273 KRFLLVLDDVWNEDY-SLWVDLKAPFLA--AEPNSKMIVTTRNSN---------VASTMGPIEHYNLKSLSDDDCWSIFI 340 (1087)
Q Consensus 273 kr~LlVlDdv~~~~~-~~~~~l~~~l~~--~~~~s~ilvTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 340 (1087)
.-=+|++||++.-.. ..|....-.+.. ...|.+||+|+.... ..+++.....++++++++++-..++.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 345899999955432 223332221111 135778999996431 22234455689999999999999999
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 341 KHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
+.+....- ...++++.-|++.+.+..-.+..+-
T Consensus 177 ~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 177 KKAKERGI----ELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 88754322 2345666778888777666555443
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=3.4e-05 Score=89.74 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=109.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc------------------cCCCeE
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD------------------SKFDVK 227 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~ 227 (1087)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.. +.|--.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 468999999999999987542 235789999999999999998877432110 001011
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH----hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCC
Q 047894 228 AWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKK----AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPN 303 (1087)
Q Consensus 228 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 303 (1087)
+.+..... ...+.+...+.. -..+++-++|||++..-.......+...+......
T Consensus 91 lEidaAs~---------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASN---------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEecccc---------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 12221111 112222222211 12356679999999766655566666665443345
Q ss_pred cEEEEEcCC-ccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 304 SKMIVTTRN-SNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 304 s~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
+++|++|.+ ..+...+ +....+.+.+++.++....+.+.+-..+. ....+....|++.++|.+.-+..+
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHHH
Confidence 666666654 3322211 11246788899999999988877643221 223456778999999988655444
No 91
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.08 E-value=5.9e-07 Score=89.90 Aligned_cols=103 Identities=22% Similarity=0.262 Sum_probs=70.2
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEE
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHL 653 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 653 (1087)
....+.|..|||++|.|+.+-+++.-++.+|.|++|.|.|..+-. +..|++|+.|||++|. +.++-.+=.+|-|.+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence 445667777888888777777777777777888888877776644 6777778888887765 45554444566677777
Q ss_pred eecCCccccccCccCCCCCCCCccCee
Q 047894 654 DIRGAKLLKEMPCGMKELKKLRTLSNF 680 (1087)
Q Consensus 654 ~l~~~~~~~~~p~~i~~L~~L~~L~~~ 680 (1087)
.+++|. +..+ .|+++|-+|..|+..
T Consensus 358 ~La~N~-iE~L-SGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 358 KLAQNK-IETL-SGLRKLYSLVNLDLS 382 (490)
T ss_pred ehhhhh-Hhhh-hhhHhhhhheecccc
Confidence 777775 4433 456666666666544
No 92
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=7.9e-05 Score=87.27 Aligned_cols=195 Identities=13% Similarity=0.139 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
.++||-+..++.|...+.... -...+.++|..|+||||+|+.+++...-.. .+. . ..+..-...+.|
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-~~~------~-~pCg~C~~C~~i 82 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCET-GIT------A-TPCGECDNCREI 82 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhcc-CCC------C-CCCCCCHHHHHH
Confidence 468999999999999887542 234578999999999999999976542110 000 0 000000111111
Q ss_pred HHHhhc-----CCCCcccHHHH---HHHHHH-hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC-ccc
Q 047894 246 LESITS-----AASDLKTLNEV---QVQLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN-SNV 315 (1087)
Q Consensus 246 ~~~l~~-----~~~~~~~~~~~---~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~-~~v 315 (1087)
...-.. ........++. ...+.. -..+++-++|||++..-....+..+...+-......++|++|.+ ..+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 100000 00000112222 222111 12467779999999877767777777766544445556555544 433
Q ss_pred cccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 316 ASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 316 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
...+ .....+.+++++.++....+.+.+-.... ....+....|++.++|.+--+..+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3221 12257999999999999888876532211 1224456779999999887555543
No 93
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.07 E-value=9.1e-06 Score=87.45 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=65.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc--cHHHHHHHHHHHhhcCCC
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF--DVLGISKALLESITSAAS 254 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~ 254 (1087)
++++++..-. ...-..|+|++|+||||||+.+|++.... +|++++||.+.+.. ++.++++.+...+-....
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n--hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN--HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh--cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 4666665442 22467899999999999999999986543 89999999998887 677777777633222222
Q ss_pred CcccHHHHH-----HHHHHh--hCCCceEEEEecC
Q 047894 255 DLKTLNEVQ-----VQLKKA--VDGKRFLLVLDDV 282 (1087)
Q Consensus 255 ~~~~~~~~~-----~~l~~~--l~~kr~LlVlDdv 282 (1087)
+........ -...+. -.+++++|++|++
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEECh
Confidence 221111111 111122 2689999999999
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.07 E-value=1.5e-07 Score=98.87 Aligned_cols=291 Identities=20% Similarity=0.234 Sum_probs=155.0
Q ss_pred CCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcC-CcccCcccEEeeeCCCCCCCCC---
Q 047894 727 HNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIG-DPLFCKIELLELENCDNCVSLP--- 802 (1087)
Q Consensus 727 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~-~~~l~~L~~L~L~~~~~~~~l~--- 802 (1087)
..|+.|++.++....+. ..-......++++.|.+.++....-..... ...+++|++|.+..|..+....
T Consensus 138 g~lk~LSlrG~r~v~~s-------slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDS-------SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcc-------hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 46888888877643322 111223345677777666654211000000 0236778888888776654332
Q ss_pred CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCcc
Q 047894 803 SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLS 882 (1087)
Q Consensus 803 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 882 (1087)
.-..+|+|++|+++.|+.+..-+...+..+ ...++.+...+|..++.-. +... ..-++.+.++++.+|..++
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG----~~~l~~~~~kGC~e~~le~--l~~~--~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRG----CKELEKLSLKGCLELELEA--LLKA--AAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhcc----chhhhhhhhcccccccHHH--HHHH--hccChHhhccchhhhcccc
Confidence 224578888888888876665322221111 2224444444444333211 1100 1225667777777886666
Q ss_pred cc----CCCCCCCccEEEEeecCCccccCCCCCcccEEEeccC-CCcCCccEEEeccCCCCCCCc-hhhhcCCCCCceEE
Q 047894 883 GE----LPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDEC-KELANLRSLLICNSTALKSLP-EEMMENNSQLEKLY 956 (1087)
Q Consensus 883 ~~----~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~-~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~ 956 (1087)
+. +..+...|+.|..++|..+... .+..+ ++..+|+.|-++.|+..+... ..+..++++|+.++
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~----------~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDE----------VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchH----------HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 43 2245667888888888654321 11111 123456666666665433221 12235677888888
Q ss_pred eccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCC-----CCCCCCCCCccEEEEeccCCCccc-CCCCCC
Q 047894 957 IRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSS-----PSSSSSPVMLQLLRIENCRKLESI-PDGLPN 1030 (1087)
Q Consensus 957 l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~ 1030 (1087)
+.+|....+-. |..| =.+|+.|+.+.++.....+.. ...-.....|+.|.+.+|+.+..- -+.+..
T Consensus 353 ~e~~~~~~d~t-------L~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 353 LEECGLITDGT-------LASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ccccceehhhh-------Hhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 88776443221 1111 124666666666543211111 111235677888899999876432 345677
Q ss_pred CCCccEEEEecCCCCcccCC
Q 047894 1031 LKCLQSICIRKCPSLVSFPE 1050 (1087)
Q Consensus 1031 l~~L~~L~l~~c~~l~~lp~ 1050 (1087)
+++|+.+++-+|..++.=+-
T Consensus 425 c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred Ccccceeeeechhhhhhhhh
Confidence 88999999999887765443
No 95
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=8.1e-05 Score=80.32 Aligned_cols=210 Identities=15% Similarity=0.105 Sum_probs=125.6
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHH
Q 047894 164 TEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISK 243 (1087)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 243 (1087)
.+..++||+.|++.+.+++...-.. ...+-+.|.|.+|.|||.+...++.+..... .--++++++...-....+++.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccchHHHHH
Confidence 4567999999999999999765432 3446789999999999999999998865332 222456776666567778888
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHhhCCC--ceEEEEecCCCCCHhhHHHhhcccc-cCCCCcEEEEEcCCcc------
Q 047894 244 ALLESITSAASDLKTLNEVQVQLKKAVDGK--RFLLVLDDVWNEDYSLWVDLKAPFL-AAEPNSKMIVTTRNSN------ 314 (1087)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~-~~~~~s~ilvTtr~~~------ 314 (1087)
.|...+...........+.+..+.++..+. -+|+|+|.++.-....-..+...|. +.-+++++|+.---..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 888877322222222255666677666543 5899999984322111222333333 2345666664321100
Q ss_pred cccc-----cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhh
Q 047894 315 VAST-----MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGL 379 (1087)
Q Consensus 315 v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~ 379 (1087)
.... ......+..+|.+.++-.+++..+.-..... .......+-++++|.|.-=-+..+-..
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~---~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS---IFLNAAIELCARKVAAPSGDLRKALDV 371 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc---ccchHHHHHHHHHhccCchhHHHHHHH
Confidence 0000 1122567889999999999999887433221 122233444555555544333333333
No 96
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=9.6e-05 Score=85.20 Aligned_cols=195 Identities=15% Similarity=0.181 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|++..++.+.+++.... ....+.++|+.|+||||+|+.+++...-. -|.... .+..-...+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-------~~~~~~-~Cg~C~sCr~i 82 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCL-------NPKDGD-CCNSCSVCESI 82 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCC-------CCCCCC-CCcccHHHHHH
Confidence 468999999999999886542 23578899999999999999987653211 011100 00000111111
Q ss_pred HHHhhcC-----CCCcccHHHHH---HHHHHh-hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEc-CCccc
Q 047894 246 LESITSA-----ASDLKTLNEVQ---VQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTT-RNSNV 315 (1087)
Q Consensus 246 ~~~l~~~-----~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTt-r~~~v 315 (1087)
....... .......++.. ..+... ..+++-++|+|++..-....+..+...+......+.+|++| ....+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 1100000 00001122221 111110 12344479999997766667777776665433455555544 43333
Q ss_pred ccc-cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh-HHHHHH
Q 047894 316 AST-MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL-AAKTLG 377 (1087)
Q Consensus 316 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~ 377 (1087)
... ......+++.++++++....+...+...+. ....+.+..|++.++|.+. |+..+-
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 222 122357899999999999888876633221 1224456789999999665 444433
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.0001 Score=86.20 Aligned_cols=198 Identities=15% Similarity=0.170 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc-CCCeEEEEEeCCcccHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDS-KFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
.+++|-+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-... ......+-.. ..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC----g~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC----GVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC----CccHHHHH
Confidence 468999888999999887643 2356789999999999999998554311000 0000000000 00000111
Q ss_pred HHHHhh-----cCCCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEc-CCcc
Q 047894 245 LLESIT-----SAASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTT-RNSN 314 (1087)
Q Consensus 245 i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTt-r~~~ 314 (1087)
|...-. .........++....+... ..++.-++|||+++.-....+..+...+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 100000 0000011222222222111 13455689999998877777877777665544455666555 4333
Q ss_pred cccc-cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 315 VAST-MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 315 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
+... ......+.+++++.++....+.+.+...+. ....+....|++.++|.+.-+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3321 122367999999999999988876643322 123456678999999987655444
No 98
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=8.7e-05 Score=84.26 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=112.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc-------------------cccCCCe
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAV-------------------RDSKFDV 226 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~-------------------~~~~f~~ 226 (1087)
.+++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+++...- .+.+.|
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D- 86 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD- 86 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC-
Confidence 468999999998888886542 2357889999999999999988753210 011222
Q ss_pred EEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEE
Q 047894 227 KAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKM 306 (1087)
Q Consensus 227 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 306 (1087)
++.+..+....+.+ .+++++..... -..+++-++|+|++..-.......+...+....+.+.+
T Consensus 87 v~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 87 VIEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 23333332222222 12222221110 02356668999999776666677777766654556666
Q ss_pred EEEcC-Cccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 307 IVTTR-NSNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 307 lvTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
|++|. .+.+...+ .....+.+.+++.++....+.+.+...+. ...++....|++.++|.+..+..
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 66553 34443322 22357899999999999999887643322 22345667899999998765443
No 99
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.03 E-value=7.3e-07 Score=97.39 Aligned_cols=104 Identities=24% Similarity=0.319 Sum_probs=83.0
Q ss_pred cccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCC
Q 047894 579 RLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGA 658 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 658 (1087)
-|++|.+++|.++.+|+.++.+.+|..||.+.|.|..+|..++.|..|+.|+++.|. +..+|..+. --.|..||++.|
T Consensus 144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScN 221 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCN 221 (722)
T ss_pred cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccC
Confidence 478888888888888888888888888888888888888888888888888888865 677787777 445888888887
Q ss_pred ccccccCccCCCCCCCCccCeeeeCcc
Q 047894 659 KLLKEMPCGMKELKKLRTLSNFIVGKR 685 (1087)
Q Consensus 659 ~~~~~~p~~i~~L~~L~~L~~~~~~~~ 685 (1087)
+ +..+|..|.+|+.||+|....+...
T Consensus 222 k-is~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 222 K-ISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred c-eeecchhhhhhhhheeeeeccCCCC
Confidence 7 6778888888888888866554443
No 100
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.03 E-value=0.0002 Score=72.26 Aligned_cols=183 Identities=19% Similarity=0.188 Sum_probs=105.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
-.+|+|.+.-++.+.=.+......+ +.+-.|.++|++|.||||||.-+++...+.- -++......-..-+..
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~-e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~-------k~tsGp~leK~gDlaa 96 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRG-EALDHVLLFGPPGLGKTTLAHIIANELGVNL-------KITSGPALEKPGDLAA 96 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcC-CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe-------EecccccccChhhHHH
Confidence 3579999998888876665543322 6677899999999999999999998754321 1111111111111111
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhccc--------ccCCCCcEE----------
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPF--------LAAEPNSKM---------- 306 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l--------~~~~~~s~i---------- 306 (1087)
++..+ + ..=++++|.+..-....-+-+..+. ...++++|.
T Consensus 97 iLt~L---------------------e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 97 ILTNL---------------------E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred HHhcC---------------------C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 22222 1 2234455655433221111111111 112233333
Q ss_pred -EEEcCCcccccccCC--CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhc
Q 047894 307 -IVTTRNSNVASTMGP--IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLR 381 (1087)
Q Consensus 307 -lvTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~ 381 (1087)
=.|||.-.+...+.. .-+.+++-.+.+|-.++..+.+..-. -+..++.+.+|+++..|-|--+.-+-+..+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 358886555443322 24678899999999999988763211 223456778899999999987766665554
No 101
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=4e-06 Score=66.36 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=33.4
Q ss_pred ccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecC
Q 047894 986 LQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKC 1042 (1087)
Q Consensus 986 L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c 1042 (1087)
|+.|++++|+++...+..|..+++|++|++++|.+....|..+.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444444455666666777777766665444556666666666666664
No 102
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.01 E-value=0.00016 Score=75.37 Aligned_cols=200 Identities=14% Similarity=0.124 Sum_probs=120.6
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 173 EDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 173 ~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
+.++++.+++..+.. ....-+.|||.+|.|||++++++.+..-... ..--.++.|.+...++...++..|++.+
T Consensus 44 ~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 345666666655443 4456689999999999999999987543221 0112467778888999999999999999
Q ss_pred hcCCCCcccHHHHHHHHHHhhCC-CceEEEEecCCCC---C---HhhHHHhhcccccCCCCcEEEEEcCCccccc-----
Q 047894 250 TSAASDLKTLNEVQVQLKKAVDG-KRFLLVLDDVWNE---D---YSLWVDLKAPFLAAEPNSKMIVTTRNSNVAS----- 317 (1087)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~---~---~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~----- 317 (1087)
+.+.........+.......++. +--+||+|++.+. . +...-.....+...-.-+-|.|-|+..--+-
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 99876666666666666566644 4458999998542 1 1112222223323334455666665321110
Q ss_pred ccCCCceeeCCCCChHh-HHHHHHHhh--cCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 318 TMGPIEHYNLKSLSDDD-CWSIFIKHV--FESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 318 ~~~~~~~~~l~~L~~~~-~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
..+-..++.++....++ ...|+.... ..-+.+ ..-...++++.|...++|+.--+..+
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 11122467777777654 444443321 111111 12234678899999999987655443
No 103
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00011 Score=85.07 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=109.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc------------------cCCCeE
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD------------------SKFDVK 227 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~ 227 (1087)
.++||-+..++.|..++.... -.....++|+.|+||||+|+.+.+...-.. +.|.-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999997542 235678999999999999998877532110 011112
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEE
Q 047894 228 AWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMI 307 (1087)
Q Consensus 228 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~il 307 (1087)
+.+..+....++++ +++++.+.. .-..++.-++|+|++..-.......+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22222211122211 122221111 0123566689999998776667777777665544566666
Q ss_pred EEcCC-ccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 308 VTTRN-SNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 308 vTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
++|.+ ..+...+ .....+++++++.++....+.+.+-..+. ....+....|++.++|.+.-+..+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 65543 3332211 11256889999999888777666533221 122345667999999988655443
No 104
>PLN03150 hypothetical protein; Provisional
Probab=98.01 E-value=7.5e-06 Score=98.17 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=89.3
Q ss_pred CccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCC
Q 047894 926 NLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSS 1005 (1087)
Q Consensus 926 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~ 1005 (1087)
.++.|++++|.+...+|..+ ..+++|+.|++++|.....+ |. .+..+++|+.|++++|++++.+|..+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~i-----P~-----~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNI-----PP-----SLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcC-----Ch-----HHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 36778899998888888775 57899999999988743333 33 366778889999999999998888888
Q ss_pred CCCCccEEEEeccCCCcccCCCCCCC-CCccEEEEecCCCCcccC
Q 047894 1006 SPVMLQLLRIENCRKLESIPDGLPNL-KCLQSICIRKCPSLVSFP 1049 (1087)
Q Consensus 1006 ~l~~L~~L~l~~~~~~~~~p~~l~~l-~~L~~L~l~~c~~l~~lp 1049 (1087)
.+++|++|++++|.+.+.+|..+..+ .++..+++.+++.+...|
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999888888877653 567788888877666544
No 105
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=0.00013 Score=83.30 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=101.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.|+|..|+|||+|++.+++...... .-..+++++ ..++...+...+.... .....+.+.+. +
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 4589999999999999999988543221 112334443 3455666666554311 11223333333 3
Q ss_pred ceEEEEecCCCCCH-hhH-HHhhccccc-CCCCcEEEEEcCCc---------ccccccCCCceeeCCCCChHhHHHHHHH
Q 047894 274 RFLLVLDDVWNEDY-SLW-VDLKAPFLA-AEPNSKMIVTTRNS---------NVASTMGPIEHYNLKSLSDDDCWSIFIK 341 (1087)
Q Consensus 274 r~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~~s~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 341 (1087)
.-+||+||+..... ..| +.+...+.. ...|..||+|+... .+..++...-.+.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 45899999965431 122 223222221 13455788887642 2223334445788999999999999998
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHh
Q 047894 342 HVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGG 378 (1087)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 378 (1087)
++-..+- . ....+++..-|++.++|.|-.+..+..
T Consensus 287 ~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 8743221 0 134467788899999999988766554
No 106
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=6.6e-05 Score=84.92 Aligned_cols=199 Identities=14% Similarity=0.184 Sum_probs=110.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEE-eCCcccHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVC-VSDVFDVLGISKA 244 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~ 244 (1087)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|..+++...-.. ......|.. +...+..=...+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~-~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCC-CcCcccccccCCCCCCCCHHHHH
Confidence 468999999999988886542 234578999999999999999876542110 110001110 0000000001111
Q ss_pred HHHHhhcC-----CCCcccHHHHHHHHHHhh-----CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEc-CCc
Q 047894 245 LLESITSA-----ASDLKTLNEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTT-RNS 313 (1087)
Q Consensus 245 i~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTt-r~~ 313 (1087)
+....... .......+++.. +.+.+ .+++-++|+|++..-....+..+...+....+.+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 11100000 001111233322 22222 3456688999997766667777777766555566666555 433
Q ss_pred ccccccC-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 314 NVASTMG-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 314 ~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
.+...+. ....++++++++++....+...+-..+ .....+.+..|++.++|.+--+..
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g----~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG----ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3332211 124688999999999888877653221 123355678899999997764433
No 107
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.00 E-value=9.3e-05 Score=83.05 Aligned_cols=180 Identities=16% Similarity=0.132 Sum_probs=98.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc
Q 047894 165 EPEVFGREEDKAKILDMVLADTPR-------DHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD 237 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 237 (1087)
...+.|+++.+++|.+.+...-.. +....+-+.++|++|+|||++|+.+++.... .| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~---~~-----~~v~~--- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---TF-----IRVVG--- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC---CE-----Eecch---
Confidence 356899999999998877432110 0123456899999999999999999986431 22 22221
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC-----------CHh---hHHHhhccccc--CC
Q 047894 238 VLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-----------DYS---LWVDLKAPFLA--AE 301 (1087)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~ 301 (1087)
..+.... ++ .........+...-...+.+|++||++.- +.. .+..+...+.. ..
T Consensus 190 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111110 00 01111112222222346789999998542 111 12222222211 13
Q ss_pred CCcEEEEEcCCccccc-cc----CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 302 PNSKMIVTTRNSNVAS-TM----GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 302 ~~s~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
.+..||.||....... .+ .-...+.++..+.++..++|..++.+..... ... ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 4667888887543221 11 1235688999999999999988774432211 111 245777887754
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00015 Score=84.41 Aligned_cols=184 Identities=17% Similarity=0.165 Sum_probs=107.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc------------------cCCCeE
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD------------------SKFDVK 227 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~ 227 (1087)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+.+...-.. +.|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999987542 235678999999999999999876532110 011111
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEE
Q 047894 228 AWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMI 307 (1087)
Q Consensus 228 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~il 307 (1087)
+++..+....+.. .+++++.+.. .-..+++-++|+|++..-.......+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 2222111111111 1111111110 0123567799999997766666677666665544455566
Q ss_pred EEcC-Cccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 308 VTTR-NSNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 308 vTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
++|. .+.+...+ .....+++++++.++....+.+.+...+. ...++....|++.++|.+--+..
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~al~ 219 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDALS 219 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 5554 33332211 11257899999999998888776532221 12344567799999998764433
No 109
>PF14516 AAA_35: AAA-like domain
Probab=97.99 E-value=0.0017 Score=71.38 Aligned_cols=203 Identities=11% Similarity=0.110 Sum_probs=119.7
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-----cc
Q 047894 163 PTEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-----FD 237 (1087)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~ 237 (1087)
+..+.+|.|...-+++.+.+...+ ..+.|.|+-.+|||+|...+.+..... .+ .++++++... .+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~--~~-~~v~id~~~~~~~~~~~ 77 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQ--GY-RCVYIDLQQLGSAIFSD 77 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHC--CC-EEEEEEeecCCCcccCC
Confidence 344567889867777777775432 589999999999999999998776533 23 4467776542 24
Q ss_pred HHHHHHHHHHHhhcCCCC-----------cccHHHHHHHHHHhh---CCCceEEEEecCCCCCH-----hhHHHhhcccc
Q 047894 238 VLGISKALLESITSAASD-----------LKTLNEVQVQLKKAV---DGKRFLLVLDDVWNEDY-----SLWVDLKAPFL 298 (1087)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~-----~~~~~l~~~l~ 298 (1087)
....++.++..+.....- ..........+.+.+ .+++.+|++|+++..-. .++-.+.+.+.
T Consensus 78 ~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~ 157 (331)
T PF14516_consen 78 LEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWY 157 (331)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHH
Confidence 555666665555443221 111122223344332 26899999999954311 12222222211
Q ss_pred cC-C----CCcEEEEEcCCcc---ccc----ccCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHh
Q 047894 299 AA-E----PNSKMIVTTRNSN---VAS----TMGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKC 366 (1087)
Q Consensus 299 ~~-~----~~s~ilvTtr~~~---v~~----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 366 (1087)
.. . ...-.++...+.+ ..+ .......++|++++.+|...|..++-.. ......++|...+
T Consensus 158 ~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--------~~~~~~~~l~~~t 229 (331)
T PF14516_consen 158 EQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--------FSQEQLEQLMDWT 229 (331)
T ss_pred HhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--------CCHHHHHHHHHHH
Confidence 11 0 1111222222111 111 1122257899999999999998775321 1122378899999
Q ss_pred CCchhHHHHHHhhhcCC
Q 047894 367 GGLALAAKTLGGLLRTT 383 (1087)
Q Consensus 367 ~g~PLai~~~~~~l~~~ 383 (1087)
+|+|.-+..++..+...
T Consensus 230 gGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 230 GGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999998765
No 110
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.8e-07 Score=92.32 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=38.4
Q ss_pred CCcccEEEeccCCCCCCCCcC--CcccCcccEEeeeCCCCCCC--CCCCCCcCCcceeeccCCCC
Q 047894 760 KCIKKVAIRNYGGARFPLWIG--DPLFCKIELLELENCDNCVS--LPSLGRLSSLKHLAVKGLKK 820 (1087)
Q Consensus 760 ~~L~~L~l~~~~~~~~p~~~~--~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~ 820 (1087)
++|..|+++||.-.-.-+.+. ...+++|..|+|++|..... ...+.+++.|++|.++.|+.
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 456666666654321111111 12378899999998875442 33677889999999988864
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00028 Score=79.62 Aligned_cols=182 Identities=14% Similarity=0.188 Sum_probs=104.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-----cCCCeEE-EEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-----SKFDVKA-WVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-----~~f~~~~-wv~~s~~~~~~ 239 (1087)
.+++|.+...+.+.+++... .-...+.++|++|+||||+|+.+.+...... ..|...+ -+.........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 46799999999999998653 2336788999999999999999876532110 0121111 11111111111
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEc-CCcccccc
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTT-RNSNVAST 318 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTt-r~~~v~~~ 318 (1087)
. .+.+++.+.. .-..+++-++|+|++..-....+..+...+......+.+|++| ....+...
T Consensus 92 ~-i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 D-IRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred H-HHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1 1111111110 0112455689999996655455666655554333345555554 33333222
Q ss_pred c-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHH
Q 047894 319 M-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAA 373 (1087)
Q Consensus 319 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 373 (1087)
+ .....++.+++++++....+...+...+. ....+.+..|++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~----~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGI----KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 1 22357899999999999888887643322 123456778899999866543
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00023 Score=83.63 Aligned_cols=199 Identities=14% Similarity=0.163 Sum_probs=112.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCC-eEEEEEeCCcccHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFD-VKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 244 (1087)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-....-. ...+-..... ...+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHH
Confidence 578999999999999997543 2356889999999999999999775321100000 0000000000 00111
Q ss_pred HHHHhhcC-----CCCcccHHHHHHHHHH----hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEc-CCcc
Q 047894 245 LLESITSA-----ASDLKTLNEVQVQLKK----AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTT-RNSN 314 (1087)
Q Consensus 245 i~~~l~~~-----~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTt-r~~~ 314 (1087)
|...-... .......+++...+.. -..+++-++|+|++..-.......+...+......+.+|++| ..+.
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 11110000 0011122332221111 123455689999997766566777776665544566666554 4343
Q ss_pred ccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 315 VASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 315 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
+...+ .....+.+..++.++....+.+.+-.... ....+....|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33222 12257899999999999999887643221 1234566789999999887655443
No 113
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.88 E-value=0.00069 Score=71.44 Aligned_cols=166 Identities=18% Similarity=0.257 Sum_probs=105.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
++.+.+|+.+...+..++..... .-+..|.|+|.+|.|||.+.+.+++.... ..+|+++-..++...++..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehHHhccHHHHHHH
Confidence 46788999999999998866543 34567799999999999999999997632 2489999999999999999
Q ss_pred HHHHhhcCCCCcc-------cHHHHHHHHHH--hhC--CCceEEEEecCCCCCHhhHHHh-hcccc-----cCCCCcEEE
Q 047894 245 LLESITSAASDLK-------TLNEVQVQLKK--AVD--GKRFLLVLDDVWNEDYSLWVDL-KAPFL-----AAEPNSKMI 307 (1087)
Q Consensus 245 i~~~l~~~~~~~~-------~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~~l-~~~l~-----~~~~~s~il 307 (1087)
|+.+......++. ........+++ ... ++.++||||+++.-. +.+.+ ...+. -+.+ .-+|
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~~~-~i~i 152 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLNEP-TIVI 152 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhCCC-ceEE
Confidence 9999852222211 12222233333 222 468999999994431 21111 11110 1222 3344
Q ss_pred EEcCCccccc---ccCCC--ceeeCCCCChHhHHHHHHHh
Q 047894 308 VTTRNSNVAS---TMGPI--EHYNLKSLSDDDCWSIFIKH 342 (1087)
Q Consensus 308 vTtr~~~v~~---~~~~~--~~~~l~~L~~~~~~~lf~~~ 342 (1087)
+++-..-... .+|.. .++..+.-+.+|...++.+.
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4444322221 12333 35677888999998888653
No 114
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.87 E-value=5.2e-05 Score=82.27 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=61.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc--ccHHHHHHHHHHHhhcCCCCcccHH------HHHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV--FDVLGISKALLESITSAASDLKTLN------EVQVQ 265 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 265 (1087)
..++|+|++|+|||||++.+++..... +|+..+||.+.+. .++.++++.+...+-....+..... .....
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n--hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN--HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc--CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 578999999999999999999986532 7999999999866 7888888888554433322221111 11111
Q ss_pred HHHh-hCCCceEEEEecCC
Q 047894 266 LKKA-VDGKRFLLVLDDVW 283 (1087)
Q Consensus 266 l~~~-l~~kr~LlVlDdv~ 283 (1087)
.... -.|++++|++|++.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 1111 36899999999993
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00037 Score=80.99 Aligned_cols=187 Identities=15% Similarity=0.174 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-------------------cCCCe
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-------------------SKFDV 226 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~~f~~ 226 (1087)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.. .+.|
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD- 89 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD- 89 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc-
Confidence 467898888888888886542 235678899999999999999877542110 0111
Q ss_pred EEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcE
Q 047894 227 KAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSK 305 (1087)
Q Consensus 227 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 305 (1087)
++++.......+. ....+...+.. -..+++-+||+|++..-....+..+...+........
T Consensus 90 v~eId~a~~~~Id------------------~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~i 151 (624)
T PRK14959 90 VVEIDGASNRGID------------------DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVT 151 (624)
T ss_pred eEEEecccccCHH------------------HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEE
Confidence 1122111111111 11111111111 1245667999999977666667777776654334455
Q ss_pred EEEEcCC-ccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch-hHHHHHHhhh
Q 047894 306 MIVTTRN-SNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA-LAAKTLGGLL 380 (1087)
Q Consensus 306 ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~~l 380 (1087)
+|++|.. ..+...+ .....+++++++.++....+...+..... ....+.+..|++.++|.+ .|+..+...+
T Consensus 152 fILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 152 FVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555543 4433221 12247899999999999888876643221 123456778999999965 5666665443
No 116
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00039 Score=84.61 Aligned_cols=178 Identities=14% Similarity=0.145 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc---------------------cCC
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---------------------SKF 224 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---------------------~~f 224 (1087)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.. .++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 468999999999999987542 235678999999999999999876542110 011
Q ss_pred CeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHH---HHH-HhhCCCceEEEEecCCCCCHhhHHHhhcccccC
Q 047894 225 DVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQV---QLK-KAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA 300 (1087)
Q Consensus 225 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 300 (1087)
+. +++..... ...+++.. .+. .-..+++-++|||++..-....+..|+..+...
T Consensus 90 dv-~eidaas~---------------------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 90 DV-TEIDAASH---------------------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred cE-EEeccccc---------------------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 11 12211111 11222221 111 112455668999999877777788877777654
Q ss_pred CCCcEEEEEc-CCcccccccC-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHH
Q 047894 301 EPNSKMIVTT-RNSNVASTMG-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAK 374 (1087)
Q Consensus 301 ~~~s~ilvTt-r~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 374 (1087)
...+.+|++| ....+...+. ....|++..++.++..+++.+.+-.... ....+....|++.++|.+..+.
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv----~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV----PVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 4556655554 4444433222 2357899999999988888775522221 1234455679999999885443
No 117
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.7e-05 Score=57.12 Aligned_cols=34 Identities=38% Similarity=0.437 Sum_probs=18.3
Q ss_pred cceeeccCCCcCcccccccccCCCCcEEEecCCC
Q 047894 602 LLRFLNLADIDIKSLPESTCKLLNLEILILRNCS 635 (1087)
Q Consensus 602 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 635 (1087)
+|++|++++|.|+.+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555555555555555555553
No 118
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.81 E-value=0.0002 Score=79.11 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=83.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
-.+++|.++..+.+..++... ....++.++|++|+||||+|+.+++... . . ...++.+. ..... .++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~~--~-~---~~~i~~~~-~~~~~-i~~ 86 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEVG--A-E---VLFVNGSD-CRIDF-VRN 86 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhC--c-c---ceEeccCc-ccHHH-HHH
Confidence 357899999999999988643 3346788899999999999999987532 1 1 23334333 11111 111
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhcccccCCCCcEEEEEcCCcccc-ccc-CC
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA-STM-GP 321 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~-~~~-~~ 321 (1087)
.+..... . ....+.+-++|+||+... .......+...+.....++++|+||...... ..+ ..
T Consensus 87 ~l~~~~~-------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RLTRFAS-------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHH-------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 1111100 0 001234568999999654 2222333333333334577888888643211 111 11
Q ss_pred CceeeCCCCChHhHHHHHHH
Q 047894 322 IEHYNLKSLSDDDCWSIFIK 341 (1087)
Q Consensus 322 ~~~~~l~~L~~~~~~~lf~~ 341 (1087)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 13566667777776655543
No 119
>CHL00181 cbbX CbbX; Provisional
Probab=97.81 E-value=0.00068 Score=72.58 Aligned_cols=134 Identities=15% Similarity=0.092 Sum_probs=71.9
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.++|++|+||||+|+.+++.....+ .-...-|+.++.. . +....... ........+.+. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g-~~~~~~~~~v~~~----~----l~~~~~g~-----~~~~~~~~l~~a-~-- 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLG-YIKKGHLLTVTRD----D----LVGQYIGH-----TAPKTKEVLKKA-M-- 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC-CCCCCceEEecHH----H----HHHHHhcc-----chHHHHHHHHHc-c--
Confidence 4578999999999999999977532211 1111225555522 1 22222110 111122223332 2
Q ss_pred ceEEEEecCCCC---------CHhhHHHhhcccccCCCCcEEEEEcCCccccccc--------CCCceeeCCCCChHhHH
Q 047894 274 RFLLVLDDVWNE---------DYSLWVDLKAPFLAAEPNSKMIVTTRNSNVASTM--------GPIEHYNLKSLSDDDCW 336 (1087)
Q Consensus 274 r~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~ 336 (1087)
.-+|++|++..- ..+....+...+.....+.+||+++....+.... .-...+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 249999999541 1122233333333333456777777543332111 11246889999999999
Q ss_pred HHHHHhhc
Q 047894 337 SIFIKHVF 344 (1087)
Q Consensus 337 ~lf~~~~~ 344 (1087)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 98887763
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.81 E-value=0.00036 Score=74.32 Aligned_cols=161 Identities=15% Similarity=0.101 Sum_probs=81.2
Q ss_pred ccccchhhHHHHHHHHhc---------CCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc
Q 047894 167 EVFGREEDKAKILDMVLA---------DTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD 237 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~---------~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 237 (1087)
.++|.+..+++|.+.... ..-...+....+.++|++|+||||+|+.+++.....+ .-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~-~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN-VLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC-cccCCceEEecHH--
Confidence 478888777776544221 1111113456688999999999999999977532111 1111123333221
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC--------HhhHHHhhcccccCCCCcEEEEE
Q 047894 238 VLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED--------YSLWVDLKAPFLAAEPNSKMIVT 309 (1087)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~~s~ilvT 309 (1087)
++.. ... ..........+.+. . .-+|++|++..-. ......+...+........+|++
T Consensus 84 --~l~~----~~~-----g~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 --DLVG----EYI-----GHTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred --Hhhh----hhc-----cchHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 1111 100 01111122222222 1 2489999996421 12233344433333333355566
Q ss_pred cCCccccc------cc-CC-CceeeCCCCChHhHHHHHHHhhc
Q 047894 310 TRNSNVAS------TM-GP-IEHYNLKSLSDDDCWSIFIKHVF 344 (1087)
Q Consensus 310 tr~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~ 344 (1087)
+...+... .. .. ...+.+++++.++-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 54433211 01 11 24578999999999999987764
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00046 Score=81.47 Aligned_cols=183 Identities=15% Similarity=0.175 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc----------------CCCeEEE
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDS----------------KFDVKAW 229 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~----------------~f~~~~w 229 (1087)
..++|.+..++.+..++.... -.....++|+.|+||||+|+.+++..--... +++ +++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vie 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIE 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEE
Confidence 468999999999999987542 2356789999999999999998764311100 011 011
Q ss_pred EEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh-hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEE-
Q 047894 230 VCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMI- 307 (1087)
Q Consensus 230 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~il- 307 (1087)
+....... .....++...+... ..+++-++|+|++..-....+..+...+-.......+|
T Consensus 92 idaasn~~------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 92 MDAASNNG------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred EeccccCC------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 11000000 01122222222211 23566699999997766667777776665433344444
Q ss_pred EEcCCcccccc-cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 308 VTTRNSNVAST-MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 308 vTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
+|+....+... ......+.+.+++.++....+...+-..+. ....+.+..|++.++|.+.-+..+
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55555444332 122357999999999999888876533221 122345678999999977544433
No 122
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.80 E-value=4.4e-06 Score=83.83 Aligned_cols=107 Identities=24% Similarity=0.273 Sum_probs=87.1
Q ss_pred hhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCC
Q 047894 570 LSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLIN 649 (1087)
Q Consensus 570 ~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 649 (1087)
++....-.+.+|+|++++|.+..+ .++..|.+|..||||+|.++++-..-.+|.|.++|+|++|. ++.+. ++.+|-+
T Consensus 299 iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LS-GL~KLYS 375 (490)
T KOG1259|consen 299 IDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLS-GLRKLYS 375 (490)
T ss_pred hhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhh-hhHhhhh
Confidence 344566678999999999999887 44889999999999999999887777889999999999965 66664 5889999
Q ss_pred cCEEeecCCccccccC--ccCCCCCCCCccCee
Q 047894 650 LNHLDIRGAKLLKEMP--CGMKELKKLRTLSNF 680 (1087)
Q Consensus 650 L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~ 680 (1087)
|..||+.+|+ ++.+. .+||+|+.|.++...
T Consensus 376 LvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 376 LVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred heeccccccc-hhhHHHhcccccccHHHHHhhc
Confidence 9999999998 55443 358888888887543
No 123
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.79 E-value=0.00063 Score=77.74 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=92.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDG 272 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (1087)
...+.|+|..|+|||+|++.+++...... .-..+++++.. ++...+...+... ..+.... .+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~~~~----~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSE------KFTNDFVNALRNN-----KMEEFKE----KYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHH------HHHHHHHHHHHcC-----CHHHHHH----HHHh
Confidence 35689999999999999999998754221 11234566432 3344444444321 2223222 2222
Q ss_pred CceEEEEecCCCCCHh-hH-HHhhccccc-CCCCcEEEEEcCCc---------ccccccCCCceeeCCCCChHhHHHHHH
Q 047894 273 KRFLLVLDDVWNEDYS-LW-VDLKAPFLA-AEPNSKMIVTTRNS---------NVASTMGPIEHYNLKSLSDDDCWSIFI 340 (1087)
Q Consensus 273 kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~~s~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 340 (1087)
.-+|||||+...... .+ ..+...+.. ...+..||+|+... .+...+.....+.+++.+.++-..++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 348999999643211 11 222222211 12355678877642 122233333568999999999999999
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHH
Q 047894 341 KHVFESRDLNAHQISESFRKKVVAKCGGLALAAK 374 (1087)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 374 (1087)
+.+..... ...+++..-|++.+.|..-.+.
T Consensus 279 ~~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 279 KKAEEEGL----ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhcCCCHHHHH
Confidence 88744221 2235667778888888766443
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00066 Score=78.15 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc------------------cCCCeE
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD------------------SKFDVK 227 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~ 227 (1087)
..++|.+..++.+..++.... -..+..++|+.|+||||+|+.++....-.. +.|.-.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468899999999999997642 235667899999999999999876432000 001111
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEE
Q 047894 228 AWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKM 306 (1087)
Q Consensus 228 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 306 (1087)
+++..+..... .....+...+.. -..+++-++|+|++..-.......+...+....+...+
T Consensus 91 ~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22211111111 111111111111 12356679999999766555666666665544344555
Q ss_pred EEEc-CCccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 307 IVTT-RNSNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 307 lvTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
|++| +...+.... .....+.+.+++.++....+.+.+-..+. ....+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5444 433332211 22257899999999998888876643221 1234566778999999776555443
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00073 Score=80.07 Aligned_cols=183 Identities=14% Similarity=0.148 Sum_probs=110.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc--------------------cccCCC
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAV--------------------RDSKFD 225 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~--------------------~~~~f~ 225 (1087)
..++|.+...+.|..++.... -...+.++|+.|+||||+|+.+.....- .+.+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999987542 2356889999999999999887664310 011333
Q ss_pred eEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcE
Q 047894 226 VKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSK 305 (1087)
Q Consensus 226 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 305 (1087)
. ..+..+......+ .+++++++... -..+++-++|+|++..-....+..+...+......+.
T Consensus 92 ~-~~ld~~~~~~vd~-Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVDD-IRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHHH-HHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 2 1222221111111 11111221110 0124556889999977766677777776665444566
Q ss_pred EEE-EcCCccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 306 MIV-TTRNSNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 306 ilv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
+|+ |+....+...+ .....++++++++++....+.+.+-..+. ....+.+..|++.++|..--+..
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 555 44444444322 22357999999999999888876633221 12234667899999997654433
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00028 Score=83.96 Aligned_cols=196 Identities=14% Similarity=0.158 Sum_probs=110.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...... ... ....++.-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~-~~~------~~~~c~~c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTT-NDP------KGRPCGTCEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC------CCCCCccCHHHHHH
Confidence 468999999999988886542 235678999999999999999976532110 000 00000111112222
Q ss_pred HHHhhcC-----CCCcccHHHHHH---HHHH-hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC-ccc
Q 047894 246 LESITSA-----ASDLKTLNEVQV---QLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN-SNV 315 (1087)
Q Consensus 246 ~~~l~~~-----~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~-~~v 315 (1087)
....... .......++... .+.. -..+++-++|+|++..-.....+.+...+......+.+|++|.. ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 2111110 001112222221 1111 11345679999999766555666666655544445666665543 333
Q ss_pred cccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 316 ASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 316 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
...+ .....+.++.++.++....+.+.+...+. ....+.+..|++.++|.+..+....
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl----~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI----NLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2211 12256889999999988888877643221 1234567789999999887555443
No 127
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.78 E-value=0.0002 Score=88.32 Aligned_cols=183 Identities=13% Similarity=0.139 Sum_probs=95.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEE-EEeCCcccHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAW-VCVSDVFDVLGI 241 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~w-v~~s~~~~~~~~ 241 (1087)
..++||+.+++++++.|..... .-+.++|.+|+||||+|+.+++...... .-....+| +.++..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------
Confidence 4689999999999998876543 2356999999999999999987642111 01122332 222210
Q ss_pred HHHHHHHhhcCCCCcccHH-HHHHHHHHhh-CCCceEEEEecCCCCC-------HhhHHHhhcccccCCCC-cEEEEEcC
Q 047894 242 SKALLESITSAASDLKTLN-EVQVQLKKAV-DGKRFLLVLDDVWNED-------YSLWVDLKAPFLAAEPN-SKMIVTTR 311 (1087)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~~-s~ilvTtr 311 (1087)
........+.+ .+...+.+.- .+++.+|++|++..-. ..+-..+..+.. ..| -++|-||.
T Consensus 255 --------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT 324 (852)
T TIGR03345 255 --------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATT 324 (852)
T ss_pred --------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecC
Confidence 00000001111 1222222221 2568999999984321 111111222221 223 46666666
Q ss_pred Ccccccc-------cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 312 NSNVAST-------MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 312 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
..+.... ......+.+++++.++..+++....-.-.....-....+....+++.+++..
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 5433211 1223579999999999999975443111110111223445566777666543
No 128
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.0006 Score=79.62 Aligned_cols=185 Identities=16% Similarity=0.140 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc---------------------cCC
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---------------------SKF 224 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---------------------~~f 224 (1087)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.. .+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 468999999999999987542 235678999999999999999876532110 011
Q ss_pred CeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh-hCCCceEEEEecCCCCCHhhHHHhhcccccCCCC
Q 047894 225 DVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPN 303 (1087)
Q Consensus 225 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 303 (1087)
+ ++.+..+....+ ....++...+... ..+++-++|+|++..-.......+...+......
T Consensus 88 d-vieidaas~~gv------------------d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~ 148 (584)
T PRK14952 88 D-VVELDAASHGGV------------------DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH 148 (584)
T ss_pred e-EEEeccccccCH------------------HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC
Confidence 1 111111111111 1111222222111 1355668999999877777777777766654445
Q ss_pred cEEEE-EcCCccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh-HHHHHHh
Q 047894 304 SKMIV-TTRNSNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL-AAKTLGG 378 (1087)
Q Consensus 304 s~ilv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~~ 378 (1087)
..+|+ ||....+...+ .....+.+.+++.++..+++.+.+...+. ....+....|++.++|.+- |+..+-.
T Consensus 149 ~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 149 LIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred eEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55554 54444433222 22357999999999988888776543221 1224456778999999775 4444433
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.5e-05 Score=56.28 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=24.8
Q ss_pred cccEEEecCCCCcccCccccCCccceeeccCCCcCcccc
Q 047894 579 RLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLP 617 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp 617 (1087)
+|++|++++|.++.+|..+++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566677777776666666667777777777777666554
No 130
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.75 E-value=2.4e-06 Score=88.26 Aligned_cols=88 Identities=22% Similarity=0.219 Sum_probs=57.7
Q ss_pred cccCCCCcccEEEecCCCCcc-----cCccccCCccceeeccCCCc----Ccccccc-------cccCCCCcEEEecCCC
Q 047894 572 DLLPKFKRLRMLSLQGYCIGE-----LPIPFEELRLLRFLNLADID----IKSLPES-------TCKLLNLEILILRNCS 635 (1087)
Q Consensus 572 ~~~~~~~~Lr~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~----i~~lp~~-------i~~L~~L~~L~L~~~~ 635 (1087)
........+..|+|+||.+.. +-..+.+.+.|+..++++-. ..++|+. +-.+++|++||||+|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345677888999999988743 34556777788888888632 2255544 3345688888888875
Q ss_pred CCcccCc----ccCCCCCcCEEeecCCc
Q 047894 636 RLIKLPP----KMRNLINLNHLDIRGAK 659 (1087)
Q Consensus 636 ~l~~lp~----~i~~L~~L~~L~l~~~~ 659 (1087)
.-..-+. -+..+..|+||++.+|.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 4322222 24557777778777775
No 131
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00061 Score=80.20 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=107.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEE-eCCcccHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVC-VSDVFDVLGISKA 244 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~ 244 (1087)
.+++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+.+...-.. ..+...|.. +...+..-...+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~-~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCC-cCCccccccccCCCCccCHHHHH
Confidence 468999999999999886542 234688999999999999998876532110 010000110 0000000000111
Q ss_pred HHHHhhcC-----CCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEE-EcCCcc
Q 047894 245 LLESITSA-----ASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIV-TTRNSN 314 (1087)
Q Consensus 245 i~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilv-Ttr~~~ 314 (1087)
+...-... .......+++...+... ..+++-++|+|+++.-.......+...+......+.+|+ |++...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 11000000 00111123332222111 235566889999977666667777776655444555554 444444
Q ss_pred cccc-cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhH
Q 047894 315 VAST-MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALA 372 (1087)
Q Consensus 315 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 372 (1087)
+... ......+++.+++.++....+.+.+...+. ....+.+..|++.++|..--
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMRD 224 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHH
Confidence 3322 223367999999999988888776532221 12345677899999996553
No 132
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.0013 Score=75.67 Aligned_cols=181 Identities=13% Similarity=0.148 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-------------------cCCCe
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-------------------SKFDV 226 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~~f~~ 226 (1087)
.+++|-+...+.+...+.... -..+..++|+.|+||||+|+.+.+..--.. .+++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 468999999999999886542 335678999999999999998765431000 0111
Q ss_pred EEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccccCCC
Q 047894 227 KAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEP 302 (1087)
Q Consensus 227 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 302 (1087)
++.+..+.. ...+++...+... ..+++-++|+|++..-.......+...+-....
T Consensus 88 v~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 112211111 1122222222210 124566899999977776677777766655445
Q ss_pred CcEEEEEcCCc-cccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 303 NSKMIVTTRNS-NVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 303 ~s~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
.+.+|++|.+. .+.... .....+++.+++.++....+.+.+...+. ...++.+..|++.++|.+.-+..+.
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 66766666542 222111 12257899999999999888776643221 1234567789999999886555543
No 133
>PRK06620 hypothetical protein; Validated
Probab=97.74 E-value=0.00053 Score=70.00 Aligned_cols=137 Identities=16% Similarity=0.110 Sum_probs=80.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.|+|++|+|||+|++.+++.... .++. ..... + +.. +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~--------~~~~--~~~~~---------------------~-------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA--------YIIK--DIFFN---------------------E-------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC--------EEcc--hhhhc---------------------h-------hHH-hc
Confidence 56899999999999999998775321 1111 00000 0 001 12
Q ss_pred ceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCccc-------ccccCCCceeeCCCCChHhHHHHHHHhhcCC
Q 047894 274 RFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNV-------ASTMGPIEHYNLKSLSDDDCWSIFIKHVFES 346 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 346 (1087)
.-++++||+..-.......+...+. ..|..||+|++.... .+++.....++++++++++-..++.+.+..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~- 162 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI- 162 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-
Confidence 3578999995322111222222222 346789999885432 123334457999999999988888776532
Q ss_pred CCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 347 RDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
.. -...+++..-|++.+.|.--.+.-
T Consensus 163 ~~---l~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 163 SS---VTISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred cC---CCCCHHHHHHHHHHccCCHHHHHH
Confidence 11 123356677788888776555443
No 134
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.73 E-value=0.00014 Score=80.40 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=76.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..+++.++..+.+...+... +.+.++|++|+|||++|+.+++...... .|+.+.||.+++..+..++....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeecccccHHHHhccc
Confidence 45788899999999988643 3578899999999999999998765443 78889999999887766554322
Q ss_pred HHHhhcCCCCcccH-HHHHHHHHHhh--CCCceEEEEecCCCCCHhh-HHHhhc
Q 047894 246 LESITSAASDLKTL-NEVQVQLKKAV--DGKRFLLVLDDVWNEDYSL-WVDLKA 295 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~-~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~l~~ 295 (1087)
.+......-. .-..+.+.++. .++++++|+|++...+... +..+..
T Consensus 246 ----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~ 295 (459)
T PRK11331 246 ----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMM 295 (459)
T ss_pred ----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhh
Confidence 1111111100 11122222222 2478999999997665433 344433
No 135
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.72 E-value=0.00079 Score=72.21 Aligned_cols=132 Identities=17% Similarity=0.105 Sum_probs=71.1
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKR 274 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (1087)
-+.++|++|+|||++|+.+++.....+ .....-|+.++.. + +...+... ........+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g-~~~~~~~v~v~~~----~----l~~~~~g~-----~~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG-YVRKGHLVSVTRD----D----LVGQYIGH-----TAPKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC-CcccceEEEecHH----H----HhHhhccc-----chHHHHHHHHHc---cC
Confidence 578999999999999987766433221 2211235554421 1 22222111 111222233332 23
Q ss_pred eEEEEecCCCC---------CHhhHHHhhcccccCCCCcEEEEEcCCccccccc--------CCCceeeCCCCChHhHHH
Q 047894 275 FLLVLDDVWNE---------DYSLWVDLKAPFLAAEPNSKMIVTTRNSNVASTM--------GPIEHYNLKSLSDDDCWS 337 (1087)
Q Consensus 275 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 337 (1087)
-+|+||++..- ....+..+...+.....+.+||+++......... .-...+.+++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58999999521 1122344444444444456777776543222111 112468999999999999
Q ss_pred HHHHhh
Q 047894 338 IFIKHV 343 (1087)
Q Consensus 338 lf~~~~ 343 (1087)
++...+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 988765
No 136
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.70 E-value=0.0007 Score=68.27 Aligned_cols=108 Identities=22% Similarity=0.249 Sum_probs=64.6
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 163 PTEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
+.-..++|.+.+++.|.+-...--.+ ....-|.++|..|+|||++++.+.+.+..++ .--|.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~G-----LRlIev~k~------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQG-----LRLIEVSKE------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcC-----ceEEEECHH-------
Confidence 34567999999998887643221111 2234578899999999999999998765332 112222221
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC-HhhHHHhhcccc
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED-YSLWVDLKAPFL 298 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~ 298 (1087)
+..++..+...++. ...||+|++||+.-+. ......+.+.+-
T Consensus 90 ------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred ------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 12233333333331 3579999999984332 244555555554
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00082 Score=76.89 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=105.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc--------------------ccCCC
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVR--------------------DSKFD 225 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~--------------------~~~f~ 225 (1087)
.+++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+.+...-. +.+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999886542 23567899999999999999887643211 00122
Q ss_pred eEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHH-HhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCc
Q 047894 226 VKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLK-KAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNS 304 (1087)
Q Consensus 226 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s 304 (1087)
. +++.........+ ..++...+. ....+++-++|+|++..-.......+...+.......
T Consensus 92 ~-~~i~g~~~~gid~------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 V-LEIDGASHRGIED------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred e-EEeeccccCCHHH------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 1 1111111111111 111111111 0123566789999986555445556666555444455
Q ss_pred EEEEEcC-Cccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh-HHHHH
Q 047894 305 KMIVTTR-NSNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL-AAKTL 376 (1087)
Q Consensus 305 ~ilvTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~ 376 (1087)
.+|++|. ...+...+ .....++++++++++....+.+.+-..+. ....+.+..|++.++|.+- |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6665553 33332221 22257899999999998888876532211 1234567789999999765 44443
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.68 E-value=0.00038 Score=85.42 Aligned_cols=156 Identities=14% Similarity=0.146 Sum_probs=85.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++||+.+++++++.|..... .-+.++|++|+|||++|+.+++...... ...+..+|. ++ ...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHH-
Confidence 4689999999999998876533 2357999999999999999987642211 011334442 11 1111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhh-CCCceEEEEecCCCCC---------HhhHHHhhcccccCCCC-cEEEEEcC
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAV-DGKRFLLVLDDVWNED---------YSLWVDLKAPFLAAEPN-SKMIVTTR 311 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~~-s~ilvTtr 311 (1087)
.... ....+.++....+.+.+ +.++.+|++|++..-. .+.-..+...+. .| -++|-+|.
T Consensus 250 ---~a~~----~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt 319 (731)
T TIGR02639 250 ---LAGT----KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTT 319 (731)
T ss_pred ---hhhc----cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecC
Confidence 1100 00112222222222222 3467899999985210 111122222222 23 34555554
Q ss_pred Cccccc-------ccCCCceeeCCCCChHhHHHHHHHhh
Q 047894 312 NSNVAS-------TMGPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 312 ~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
..+... .......+.+++++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 322211 11123578999999999999998654
No 139
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.66 E-value=0.00043 Score=77.94 Aligned_cols=179 Identities=14% Similarity=0.111 Sum_probs=96.0
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..+.|+++.++++.+.+...-. -+...++-|.++|++|+|||++|+.+++.... . |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~---~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---T-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC---C-----EEEeeh----
Confidence 4688999999999887642110 01133466899999999999999999886431 2 222221
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC-----------CHhhHHHhhccc---cc--CCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-----------DYSLWVDLKAPF---LA--AEP 302 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~~ 302 (1087)
..+.. .... .....+...+...-...+.+|+|||++.- +...+..+...+ .. ...
T Consensus 199 ~~l~~----~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELVQ----KFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHhH----hhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 11111 1000 01111112222222456789999999542 111112222221 11 123
Q ss_pred CcEEEEEcCCccccc-cc-C---CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 303 NSKMIVTTRNSNVAS-TM-G---PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
+..||.||....... .+ . -...+.+++.+.++-.++|..+..+..-. .... ...+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVD----LEELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCC----HHHHHHHcCCCC
Confidence 556777776543222 11 1 12568999999999999998876432211 1112 244677776643
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.0014 Score=77.80 Aligned_cols=197 Identities=13% Similarity=0.145 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|.+...+.|..++.... -...+.++|+.|+||||+|+.+++...-.. ... ... ..+..-...+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~-~~~----~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDK-PTP----EPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCC-cCC-CCC----CCCcccHHHHHH
Confidence 468899999999999887542 224678999999999999999987642110 000 000 000111111111
Q ss_pred HHHhhc-----CCCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcC-Cccc
Q 047894 246 LESITS-----AASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTR-NSNV 315 (1087)
Q Consensus 246 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr-~~~v 315 (1087)
...... ........+++.+.+... ..+++-++|+|++..-....+..+...+......+.+|++|. ...+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 111110 000112223332222211 135566899999977666677777766654334455554443 3333
Q ss_pred cccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 316 ASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 316 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
...+ .....+.+..++.++....+.+.+...... ...+.+..|++.++|.+..+..+.
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~----is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE----IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2221 122567888999998888777665332211 223456789999999886554443
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0015 Score=74.63 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=93.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCC-eEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFD-VKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDG 272 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (1087)
..+.|+|.+|+|||+|++.+++..... +.. .++|++. .++..++...+... ..++ +.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~--~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN--EPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHh--CCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 458999999999999999999875422 232 4556653 34455555555321 2222 2223333
Q ss_pred CceEEEEecCCCCC-HhhH-HHhhccccc-CCCCcEEEEEcCC-cc--------cccccCCCceeeCCCCChHhHHHHHH
Q 047894 273 KRFLLVLDDVWNED-YSLW-VDLKAPFLA-AEPNSKMIVTTRN-SN--------VASTMGPIEHYNLKSLSDDDCWSIFI 340 (1087)
Q Consensus 273 kr~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~~s~ilvTtr~-~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~ 340 (1087)
+.-+|++||+.... ...+ ..+...+.. ...|..||+||.. .. +...+.....+.+++.+.+.-..++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 45689999996421 1111 122222211 1234578888752 21 12233344578899999999999998
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHH
Q 047894 341 KHVFESRDLNAHQISESFRKKVVAKCGGLALAAK 374 (1087)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 374 (1087)
+.+..... ...+++..-|++.+.|.--.+.
T Consensus 274 ~~~~~~~~----~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 274 KMLEIEHG----ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHhcCC----CCCHHHHHHHHhccccCHHHHH
Confidence 87743221 2235567778888887655443
No 142
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.62 E-value=0.0013 Score=76.07 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=93.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDG 272 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (1087)
...+.|+|.+|+|||+|++.+++...... .-..+++++.. .+...+...+.. ...+.. .+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~------~~~~~~~~~~~~-----~~~~~~----~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSE------KFTNDFVNALRN-----NTMEEF----KEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHH------HHHHHHHHHHHc-----CcHHHH----HHHHh-
Confidence 35689999999999999999998754221 11234555443 233344444432 122222 22333
Q ss_pred CceEEEEecCCCCCHh-hH-HHhhccccc-CCCCcEEEEEcCCcc---------cccccCCCceeeCCCCChHhHHHHHH
Q 047894 273 KRFLLVLDDVWNEDYS-LW-VDLKAPFLA-AEPNSKMIVTTRNSN---------VASTMGPIEHYNLKSLSDDDCWSIFI 340 (1087)
Q Consensus 273 kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~~s~ilvTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 340 (1087)
+.-+|||||+...... .+ ..+...+.. ...|..||+|+.... +...+.....+.+++.+.++-..++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 3458999999543211 11 222222211 123456788776431 22334444578999999999999999
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHH
Q 047894 341 KHVFESRDLNAHQISESFRKKVVAKCGGLALAAK 374 (1087)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 374 (1087)
+.+-... ....+++..-|++.+.|..-.+.
T Consensus 291 ~~~~~~~----~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 291 KKAEEEG----IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHcC----CCCCHHHHHHHHcCcCCCHHHHH
Confidence 8874321 12335677788888888776443
No 143
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.1e-06 Score=86.28 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=65.5
Q ss_pred cCCccEEEeccCCCCCCCc-hhhhcCCCCCceEEeccCCCCcccc---cCCCCCCCCEEEEec----------------c
Q 047894 924 LANLRSLLICNSTALKSLP-EEMMENNSQLEKLYIRDCESLTFIA---RRRLPASLKRLEIEN----------------C 983 (1087)
Q Consensus 924 l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~---~~~l~~~L~~L~l~~----------------c 983 (1087)
-.+|+.|+|+.|...+... .-++++|+.|.+|++++|......- ...+.+.|..|++++ |
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 3478888999888766654 3346789999999999986433211 123445677776665 4
Q ss_pred cCccccccccC-CCCCCCCCCCCCCCCccEEEEeccCCCcccCC---CCCCCCCccEEEEecC
Q 047894 984 EKLQRLFDDEG-DASSSSPSSSSSPVMLQLLRIENCRKLESIPD---GLPNLKCLQSICIRKC 1042 (1087)
Q Consensus 984 ~~L~~l~l~~n-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~---~l~~l~~L~~L~l~~c 1042 (1087)
++|.+|++++| .++......+..++.|++|.++.|+.. +|. .+...|+|.+|++.+|
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 55555555544 233333333444555555555555432 221 2334455555555544
No 144
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0035 Score=62.95 Aligned_cols=181 Identities=17% Similarity=0.179 Sum_probs=105.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeC-CcccHHHHHHHHHHHhhcCCCCc--ccHHHHHHHHHHh
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVS-DVFDVLGISKALLESITSAASDL--KTLNEVQVQLKKA 269 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~ 269 (1087)
.+++.|+|.-|+|||.+++........ +.++-|.++ +..+...+...++..+..+.... ...+...+.+...
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~-----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNE-----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCC-----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 368999999999999999955443221 112223333 44566777888888877633211 1223333344433
Q ss_pred h-CCCc-eEEEEecCCCCCHhhHHHhhcccccCCCC---cEEEEEcCCcc--------cccccCCCce-eeCCCCChHhH
Q 047894 270 V-DGKR-FLLVLDDVWNEDYSLWVDLKAPFLAAEPN---SKMIVTTRNSN--------VASTMGPIEH-YNLKSLSDDDC 335 (1087)
Q Consensus 270 l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~~---s~ilvTtr~~~--------v~~~~~~~~~-~~l~~L~~~~~ 335 (1087)
. +++| ..+++||..+......+.++....-...+ -+|+..-..+- ....-..... |.+.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 5677 89999999766555544443321111111 12333222110 0000011123 89999999999
Q ss_pred HHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhh
Q 047894 336 WSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGL 379 (1087)
Q Consensus 336 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~ 379 (1087)
..++..+..+...+. +-..++....|..+..|.|.+|..++..
T Consensus 206 ~~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999988876553322 2223456678999999999999887653
No 145
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.61 E-value=0.00057 Score=69.99 Aligned_cols=185 Identities=16% Similarity=0.161 Sum_probs=112.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEE-EEEeCCcccHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKA-WVCVSDVFDVLGISK 243 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~~~~~~~~ 243 (1087)
-.+++|-+..+..+...+... ...+...+|++|.|||+.|..+++..--.. -|.+++ -.++|+..... +.+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~-~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQ-LFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCcc-ccccchhhhccccccccc-chh
Confidence 357899999999999998762 235788999999999999998887643322 454443 23444432222 100
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHhh--CCCc-eEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcC-Cccccccc
Q 047894 244 ALLESITSAASDLKTLNEVQVQLKKAV--DGKR-FLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTR-NSNVASTM 319 (1087)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr-~~~v~~~~ 319 (1087)
.= ..+...+........ ..++ =+||||+++.-..+.|..+...+......++.|+.+- -..+...+
T Consensus 107 ~K----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 EK----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred hh----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 00 011111111110000 1123 3889999988888999999888777566666554443 33322211
Q ss_pred C-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh
Q 047894 320 G-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL 371 (1087)
Q Consensus 320 ~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL 371 (1087)
. .-..|..++|.+++...-+...+-..+. ....+..+.|++.++|---
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGDLR 225 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCcHH
Confidence 1 1145889999999999988887743332 2334566779999998443
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.59 E-value=0.0004 Score=86.27 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=85.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++||+++++++++.|..... .-+.++|++|+|||++|+.++....... ..-+..+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 3589999999999999976543 2357999999999999999987643111 001234443 1 11111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHH-HHHhhCCCceEEEEecCCCC-------CHhhHHHhhcccccCCCCcEEEEEcCCcc
Q 047894 243 KALLESITSAASDLKTLNEVQVQ-LKKAVDGKRFLLVLDDVWNE-------DYSLWVDLKAPFLAAEPNSKMIVTTRNSN 314 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~-------~~~~~~~l~~~l~~~~~~s~ilvTtr~~~ 314 (1087)
+. ... -..+.++.... +.+.-..++.+|++|++..- ...+-..+..+.... ..-++|.+|...+
T Consensus 247 ---~a---g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 247 ---LA---GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred ---hc---cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 11 111 11122322222 22222456899999998311 000111222222111 1246666666554
Q ss_pred cccc-------cCCCceeeCCCCChHhHHHHHHHh
Q 047894 315 VAST-------MGPIEHYNLKSLSDDDCWSIFIKH 342 (1087)
Q Consensus 315 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 342 (1087)
.... ......+.++..+.++...++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 3221 122356888888999988887653
No 147
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.58 E-value=2.7e-05 Score=89.28 Aligned_cols=103 Identities=31% Similarity=0.451 Sum_probs=89.2
Q ss_pred cCCCC-cccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCE
Q 047894 574 LPKFK-RLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNH 652 (1087)
Q Consensus 574 ~~~~~-~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 652 (1087)
...+. +|+.|++++|.+..+|..++.++.|+.|++++|.+..+|...+.+.+|+.|++++|. +..+|..+..+..|+.
T Consensus 135 ~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~ 213 (394)
T COG4886 135 IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEE 213 (394)
T ss_pred cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhh
Confidence 34443 899999999999999989999999999999999999999988899999999999976 8999988888888999
Q ss_pred EeecCCccccccCccCCCCCCCCccC
Q 047894 653 LDIRGAKLLKEMPCGMKELKKLRTLS 678 (1087)
Q Consensus 653 L~l~~~~~~~~~p~~i~~L~~L~~L~ 678 (1087)
|.+++|. ...++..+.++.++..+.
T Consensus 214 l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 214 LDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhcCCc-ceecchhhhhcccccccc
Confidence 9999996 445666677777777775
No 148
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.0036 Score=68.86 Aligned_cols=167 Identities=15% Similarity=0.146 Sum_probs=93.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (1087)
....+.|+|..|.|||.|++.+.+.... .......+.++ .+....+++..+.. .-...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~---~~~~a~v~y~~----se~f~~~~v~a~~~---------~~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALA---NGPNARVVYLT----SEDFTNDFVKALRD---------NEMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHh---hCCCceEEecc----HHHHHHHHHHHHHh---------hhHHHHHHhh-
Confidence 4568999999999999999999997542 22222222222 22333344443332 1122344444
Q ss_pred CCceEEEEecCCCCC-----HhhHHHhhcccccCCCCcEEEEEcCCc---------ccccccCCCceeeCCCCChHhHHH
Q 047894 272 GKRFLLVLDDVWNED-----YSLWVDLKAPFLAAEPNSKMIVTTRNS---------NVASTMGPIEHYNLKSLSDDDCWS 337 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~~s~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 337 (1087)
.-=++++||++--. +...-.+...+.. .|..||+|++.. ...+++..+-.+.+.+.+.+....
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 34488999995421 1122222222322 344899998642 223344555689999999999999
Q ss_pred HHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHh
Q 047894 338 IFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGG 378 (1087)
Q Consensus 338 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 378 (1087)
++.+.+....-.-+.+...-++..+.+-..-+.-|+..+..
T Consensus 252 iL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~ 292 (408)
T COG0593 252 ILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDA 292 (408)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99987644433333333444444444444444445544433
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.0031 Score=73.11 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=90.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.|+|..|+|||.|++.+++...... .-..+++++. .++..++...+.. ...+. +++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yita------eef~~el~~al~~-----~~~~~----f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSS------EEFTNEFINSIRD-----GKGDS----FRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeH------HHHHHHHHHHHHh-----ccHHH----HHHHhhc-
Confidence 3589999999999999999998753211 1123455543 3334444444332 11222 2222332
Q ss_pred ceEEEEecCCCCCH-hhHH-Hhhccccc-CCCCcEEEEEcCCc---------ccccccCCCceeeCCCCChHhHHHHHHH
Q 047894 274 RFLLVLDDVWNEDY-SLWV-DLKAPFLA-AEPNSKMIVTTRNS---------NVASTMGPIEHYNLKSLSDDDCWSIFIK 341 (1087)
Q Consensus 274 r~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~~s~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 341 (1087)
-=+|||||+..... ..|. .+...+.. ...|..|||||... .+...+...-.+.++..+.+.-..++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 35899999965422 2222 22222211 12356788888752 2223444556789999999999999998
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHHhCCchhHH
Q 047894 342 HVFESRDLNAHQISESFRKKVVAKCGGLALAA 373 (1087)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 373 (1087)
++....- ...+++..-|++.+.+..-.+
T Consensus 458 ka~~r~l----~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 458 KAVQEQL----NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHhcCC----CCCHHHHHHHHHhccCCHHHH
Confidence 8743322 223456666777766654433
No 150
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0011 Score=75.52 Aligned_cols=107 Identities=23% Similarity=0.329 Sum_probs=67.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
+...+|.++-+++|++++.-..-.+.-+.+++..+|++|||||++|+.++..... .| +-++|+...|..++-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR---kF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR---KF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC---ce---EEEeccccccHHhhccc
Confidence 5678999999999999986543332245689999999999999999999986542 33 34566666665543211
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCC
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWN 284 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 284 (1087)
.+..-. .-...+.+.+++. +-..-|+.||.|+.
T Consensus 484 -----RRTYVG-AMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 -----RRTYVG-AMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred -----ceeeec-cCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 111111 1122233333322 34567888999843
No 151
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0016 Score=77.09 Aligned_cols=183 Identities=17% Similarity=0.175 Sum_probs=106.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-------------------cCCCe
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-------------------SKFDV 226 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~~f~~ 226 (1087)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.. .+++.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 468999999999999886542 235678999999999999998876532110 01111
Q ss_pred EEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh-hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcE
Q 047894 227 KAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSK 305 (1087)
Q Consensus 227 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 305 (1087)
+.+.......+. +..++...+... ..+++-++|+|++..-.......+...+-.....+.
T Consensus 91 -~eid~~s~~~v~------------------~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 91 -FEIDGASNTGVD------------------DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred -eeeeccCccCHH------------------HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 111111111111 111222222111 134556899999977666667777766654444555
Q ss_pred EEE-EcCCccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh-HHHHH
Q 047894 306 MIV-TTRNSNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL-AAKTL 376 (1087)
Q Consensus 306 ilv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~ 376 (1087)
+|+ ||....+...+ .....+.+.+++.++....+...+-..+. ....+....|++.++|..- |+..+
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 54444444322 12256888999999988887765532221 1234566779999999664 44444
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0028 Score=74.33 Aligned_cols=194 Identities=15% Similarity=0.157 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++...-.. .... ..+....+- +.+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-~~~~---~pC~~C~~C----~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVN-GPTP---MPCGECSSC----KSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcccc-CCCC---CCCccchHH----HHH
Confidence 468999999999999997542 335788999999999999999987542110 0000 000000000 011
Q ss_pred HHHhhc-----CCCCcccHHHHHHHH---HH-hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC-ccc
Q 047894 246 LESITS-----AASDLKTLNEVQVQL---KK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN-SNV 315 (1087)
Q Consensus 246 ~~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~-~~v 315 (1087)
...-.. ........++..... .. -..+++-++|+|++..-....+..+...+......+.+|++|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 000000 000001222222211 11 12456668999999777666777777776654455666665543 333
Q ss_pred cccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 316 ASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 316 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
...+ .....+...+++.++....+.+.+...+. ...++.+..|++.++|.+..+...
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2221 12246889999999988888876643221 223456677999999988655443
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0034 Score=68.05 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc-------------cccCCCeEEEEEe
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAV-------------RDSKFDVKAWVCV 232 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~-------------~~~~f~~~~wv~~ 232 (1087)
..++|.+..++.+...+.... -.....++|+.|+||+++|..+.+..-- ...|.|. .|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl-~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDL-LWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCE-EEEec
Confidence 357899999999999987643 2367899999999999999877554210 1123332 33321
Q ss_pred CCcccHHHHHHHHHHHhh--cCCCCcccHHHHHHHHHHhh-----CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcE
Q 047894 233 SDVFDVLGISKALLESIT--SAASDLKTLNEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSK 305 (1087)
Q Consensus 233 s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 305 (1087)
....+-..+..+-++..+ ......-..++.. .+.+.+ .+++-++|+|++..-+......+...+-... .+.
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 100000001111111111 0011112233322 233332 4567799999997776667777766665333 344
Q ss_pred EE-EEcCCccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 306 MI-VTTRNSNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 306 il-vTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
+| +|+....+...+ .....+.+.++++++..+.+.+...... .......++..++|.|..+..+.
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHHH
Confidence 55 444444333322 2226799999999999999987642110 01113578999999998665543
No 154
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.47 E-value=0.0011 Score=80.16 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=86.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc---CCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDS---KFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++||+.+++++++.|..... .-+.++|++|+|||++|+.++........ ..++.+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH---
Confidence 3589999999999999977432 23468999999999999999865321110 123444421 111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhh-CCCceEEEEecCCCC--------CHhhHHHhhcccccCCCCcEEEEEcCCc
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAV-DGKRFLLVLDDVWNE--------DYSLWVDLKAPFLAAEPNSKMIVTTRNS 313 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~~s~ilvTtr~~ 313 (1087)
.++. . .....+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-+||-+|...
T Consensus 252 -~lla---G-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 252 -SLLA---G-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred -HHhc---c-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 1111 0 000112222222222222 346789999999421 112222233333322 233555555544
Q ss_pred ccccc-------cCCCceeeCCCCChHhHHHHHHHhh
Q 047894 314 NVAST-------MGPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 314 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
+.... .+....+.++..+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32111 1222579999999999999988653
No 155
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0022 Score=69.91 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=64.3
Q ss_pred CCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCc-cccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCC
Q 047894 272 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNS-NVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDL 349 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 349 (1087)
+++-++|+|+++.-+......+...+-....++.+|+||.+. .+...+ +.-..+.+.+++.+++.+.+.... ..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~--- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE--- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc---
Confidence 444456789998877777787777766544567777777654 333221 122578999999999998887653 11
Q ss_pred CcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 350 NAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 350 ~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
...+.+..++..++|.|..+..+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 11223456789999999866554
No 156
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0047 Score=72.82 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=107.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|.+...+.+.+++.... -.....++|+.|+||||+|+.+.+...-.. ..+. ..++.-...+.+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~-~~~~-------~pC~~C~~C~~i 82 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLN-PPDG-------EPCNECEICKAI 82 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCC-------CCCCccHHHHHH
Confidence 468999999999999987643 235677899999999999998866432110 0000 000000011111
Q ss_pred HHHhhcC-----CCCcccHHH---HHHHHHH-hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEE-EcCCccc
Q 047894 246 LESITSA-----ASDLKTLNE---VQVQLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIV-TTRNSNV 315 (1087)
Q Consensus 246 ~~~l~~~-----~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilv-Ttr~~~v 315 (1087)
....... .......++ +...+.. -..+++-++|+|++..-....+..+...+........+|+ ||....+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 1100000 000012222 2222111 1245667889999977666677777766554333444444 4444443
Q ss_pred cccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 316 ASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 316 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
...+ .....+...+++.++....+...+-..+. ....+....|++.++|.+..+..
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~al~ 219 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRDALS 219 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3221 12256888999999988888876632221 12245667789999997765443
No 157
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.41 E-value=3.9e-05 Score=87.93 Aligned_cols=101 Identities=25% Similarity=0.288 Sum_probs=69.0
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEE
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHL 653 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 653 (1087)
+..++.|..|++.+|.+..+...+..+.+|++|++++|.|+.+. .+..+..|+.|++.+|. +..++. +..+.+|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Cccchhhhcc
Confidence 56677788888888888777555777888888888888887774 36677778888888765 555543 5567788888
Q ss_pred eecCCccccccCcc-CCCCCCCCccC
Q 047894 654 DIRGAKLLKEMPCG-MKELKKLRTLS 678 (1087)
Q Consensus 654 ~l~~~~~~~~~p~~-i~~L~~L~~L~ 678 (1087)
++++|. +..+... ...+.++..+.
T Consensus 168 ~l~~n~-i~~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDELSELISLEELD 192 (414)
T ss_pred cCCcch-hhhhhhhhhhhccchHHHh
Confidence 888776 4444332 34455555543
No 158
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.40 E-value=0.00096 Score=78.40 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=41.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
-.+++|.++.++++..++....... ...+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~-~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLEN-APKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccc-CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999987543211 234689999999999999999998754
No 159
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0038 Score=71.70 Aligned_cols=166 Identities=20% Similarity=0.275 Sum_probs=95.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
+.+.+|.++.+++|+++|.-..-...-...++++||++|||||+|++.+++... +.| +-++++...|..++-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~---Rkf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG---RKF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC---CCE---EEEecCccccHHHhccc
Confidence 467899999999999998643222113447999999999999999999998643 234 45666666665544211
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCH----hhHHHhhcccccCC-------------CCcEE-
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY----SLWVDLKAPFLAAE-------------PNSKM- 306 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~-------------~~s~i- 306 (1087)
.+..-+ .-...+.+.+++ .+-+.-+++||.++.-.. +.-.++...|.+.. -=|.|
T Consensus 396 -----RRTYIG-amPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 -----RRTYIG-AMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred -----cccccc-cCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 111111 112223333332 245678999999843211 01112222222211 11344
Q ss_pred EEEcCCc-c-ccc-ccCCCceeeCCCCChHhHHHHHHHhh
Q 047894 307 IVTTRNS-N-VAS-TMGPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 307 lvTtr~~-~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
.|||-+. + +.. .+.....+++.+.+++|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3455432 1 221 22333689999999999888877765
No 160
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.36 E-value=2.7e-05 Score=80.65 Aligned_cols=66 Identities=27% Similarity=0.321 Sum_probs=44.8
Q ss_pred hhcccCCCCcccEEEecCCC----CcccCcc-------ccCCccceeeccCCCcCc-ccc----cccccCCCCcEEEecC
Q 047894 570 LSDLLPKFKRLRMLSLQGYC----IGELPIP-------FEELRLLRFLNLADIDIK-SLP----ESTCKLLNLEILILRN 633 (1087)
Q Consensus 570 ~~~~~~~~~~Lr~L~l~~~~----i~~lp~~-------i~~l~~L~~L~L~~~~i~-~lp----~~i~~L~~L~~L~L~~ 633 (1087)
....+.+.+.||..++++-. ..++|+. +...++|++||||.|-+. .-+ .-|.+++.|+.|.|.+
T Consensus 50 i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N 129 (382)
T KOG1909|consen 50 IAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNN 129 (382)
T ss_pred HHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhc
Confidence 34456777788888888643 2344433 445668999999988765 222 3466788899999888
Q ss_pred CC
Q 047894 634 CS 635 (1087)
Q Consensus 634 ~~ 635 (1087)
|.
T Consensus 130 ~G 131 (382)
T KOG1909|consen 130 CG 131 (382)
T ss_pred CC
Confidence 75
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.36 E-value=0.00042 Score=65.29 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEecCCChHHHHHHHHhccc
Q 047894 196 IPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999875
No 162
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=1.2e-05 Score=71.43 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=57.0
Q ss_pred cccEEEecCCCCcccCcc---ccCCccceeeccCCCcCccccccccc-CCCCcEEEecCCCCCcccCcccCCCCCcCEEe
Q 047894 579 RLRMLSLQGYCIGELPIP---FEELRLLRFLNLADIDIKSLPESTCK-LLNLEILILRNCSRLIKLPPKMRNLINLNHLD 654 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~lp~~---i~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 654 (1087)
.+..+||+.|.+..+++. +....+|...+|++|.++.+|+.+.. .+.+++|++++|. +..+|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 345566666665544333 34455666666666666666665543 3466666666644 666666666666666666
Q ss_pred ecCCccccccCccCCCCCCCCcc
Q 047894 655 IRGAKLLKEMPCGMKELKKLRTL 677 (1087)
Q Consensus 655 l~~~~~~~~~p~~i~~L~~L~~L 677 (1087)
++.|. +...|.-+-.|.+|-.|
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHh
Confidence 66666 44455555555555444
No 163
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.34 E-value=0.0037 Score=71.28 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=86.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDG 272 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (1087)
...+.|+|+.|+|||+|++.+++..... . ..+++++. ..+...+...+... .. ..+++.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~-~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--G-GKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--C-CCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-
Confidence 3568899999999999999999875422 1 23345542 23344444444321 11 12333333
Q ss_pred CceEEEEecCCCCCHhhH--HHhhccccc-CCCCcEEEEEcCCc---------ccccccCCCceeeCCCCChHhHHHHHH
Q 047894 273 KRFLLVLDDVWNEDYSLW--VDLKAPFLA-AEPNSKMIVTTRNS---------NVASTMGPIEHYNLKSLSDDDCWSIFI 340 (1087)
Q Consensus 273 kr~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~~s~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 340 (1087)
+.-++++||+.......| +.+...+.. ...|..||+||... .+..++.....+.+++++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 345888999854321111 122222111 12356788888542 122334444678999999999999998
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHhCCc
Q 047894 341 KHVFESRDLNAHQISESFRKKVVAKCGGL 369 (1087)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 369 (1087)
+.+-.... ...+++..-|++.+.|.
T Consensus 282 ~k~~~~~~----~l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSI----RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhcCCC
Confidence 87743221 22344555566666654
No 164
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.33 E-value=0.0019 Score=80.66 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=83.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++||+.+++++++.|..... .-+.++|++|+|||++|+.+........ .-....+|.. +...+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH-
Confidence 4599999999999999976432 2356899999999999999887642110 0012233321 11111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhh--CCCceEEEEecCCCCC-------HhhHHHhhcccccCCCCcEEEEEcCCc
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAV--DGKRFLLVLDDVWNED-------YSLWVDLKAPFLAAEPNSKMIVTTRNS 313 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~~s~ilvTtr~~ 313 (1087)
+.. .....+.+.....+-+.+ .+++.+|++|++..-. ..+-..+..+.... ..-++|-+|...
T Consensus 241 ---~a~----~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~ 312 (852)
T TIGR03346 241 ---IAG----AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLD 312 (852)
T ss_pred ---hhc----chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHH
Confidence 100 000012222222222222 2468999999985321 00111222222211 123555555544
Q ss_pred cccc-------ccCCCceeeCCCCChHhHHHHHHHhh
Q 047894 314 NVAS-------TMGPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 314 ~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
+... .......+.++..+.++...++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 3311 11222568899999999999887653
No 165
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.33 E-value=4.1e-05 Score=87.74 Aligned_cols=102 Identities=25% Similarity=0.386 Sum_probs=81.1
Q ss_pred CCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEee
Q 047894 576 KFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDI 655 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 655 (1087)
.+..+..+.+..|.+..+-..++.+..|.+|++.+|.|+.+...+..+.+|++|++++|. +..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhhee
Confidence 455666777888888776566899999999999999999887778999999999999976 677654 788888999999
Q ss_pred cCCccccccCccCCCCCCCCccCeee
Q 047894 656 RGAKLLKEMPCGMKELKKLRTLSNFI 681 (1087)
Q Consensus 656 ~~~~~~~~~p~~i~~L~~L~~L~~~~ 681 (1087)
.+|. +..+ .++..+..|+.++...
T Consensus 148 ~~N~-i~~~-~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 148 SGNL-ISDI-SGLESLKSLKLLDLSY 171 (414)
T ss_pred ccCc-chhc-cCCccchhhhcccCCc
Confidence 9998 5544 3466677777775443
No 166
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.23 E-value=0.0044 Score=77.00 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++||+.+++++++.|..... .-+.++|.+|+|||++|+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~------~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK------NNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc------CceEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999976543 245699999999999999988764
No 167
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.23 E-value=0.0022 Score=72.37 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=86.4
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
.++.|.+..+++|.+.+.-.-. -+....+-|.++|++|+|||++|+.+++... ..| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~---~~f---i~V~~se---- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS---ATF---LRVVGSE---- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC---CCE---EEEecch----
Confidence 4578999999988887642110 0112345688999999999999999998643 133 2222111
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC-----------Hhh---HHHhhccccc--CCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED-----------YSL---WVDLKAPFLA--AEP 302 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~---~~~l~~~l~~--~~~ 302 (1087)
+.. ... ......+...+.....+.+.+|+||+++... ... ...+...+.. ...
T Consensus 253 --L~~----k~~-----Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 --LIQ----KYL-----GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred --hhh----hhc-----chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 111 100 0011112222333334678899999873210 000 1111111111 123
Q ss_pred CcEEEEEcCCcccccc-c----CCCceeeCCCCChHhHHHHHHHhhc
Q 047894 303 NSKMIVTTRNSNVAST-M----GPIEHYNLKSLSDDDCWSIFIKHVF 344 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 344 (1087)
+.+||.||......+. + .-...+.++..+.++..++|..++.
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 5678888775433321 1 1225789999999999999987653
No 168
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.20 E-value=0.0045 Score=75.66 Aligned_cols=166 Identities=18% Similarity=0.270 Sum_probs=87.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
+..++|.++.+++|++++............++.++|++|+||||+|+.++.... . .| .-++.+...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~-~~---~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--R-KY---VRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--C-CE---EEEEcCCCCCHHHhccc
Confidence 356899999999999988742211112335789999999999999999987532 1 22 22334443333222111
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhh----HHHhhccccc---------------CCCCcE
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSL----WVDLKAPFLA---------------AEPNSK 305 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~~s~ 305 (1087)
-....+ .....+...+... ....-+++||.++...... ...+...+.+ .-....
T Consensus 395 ~~~~~g------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 RRTYIG------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hhccCC------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 100010 1112223333332 2234578999985432111 1223322221 112334
Q ss_pred EEEEcCCccccccc-CCCceeeCCCCChHhHHHHHHHhh
Q 047894 306 MIVTTRNSNVASTM-GPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 306 ilvTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
+|.|+.+..+.... .....+.+.++++++-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44455433322211 122568889999988888777654
No 169
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00031 Score=83.92 Aligned_cols=109 Identities=21% Similarity=0.234 Sum_probs=84.1
Q ss_pred ccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccc--ccc
Q 047894 543 YEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLP--EST 620 (1087)
Q Consensus 543 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp--~~i 620 (1087)
.-++.||+|.+.+... ..+-+...+.+|++|+.||+++++++.+ .+++.|++|+.|.+++-.+..-. ..+
T Consensus 145 ~~LPsL~sL~i~~~~~-------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQF-------DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred hhCcccceEEecCcee-------cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 3578899998765432 1222556789999999999999999988 88999999999999998877543 468
Q ss_pred ccCCCCcEEEecCCCCCcccCc-------ccCCCCCcCEEeecCCcc
Q 047894 621 CKLLNLEILILRNCSRLIKLPP-------KMRNLINLNHLDIRGAKL 660 (1087)
Q Consensus 621 ~~L~~L~~L~L~~~~~l~~lp~-------~i~~L~~L~~L~l~~~~~ 660 (1087)
.+|++|++||+|...... .+. .-..|++||.||.+++..
T Consensus 217 F~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 899999999999854322 221 123489999999998863
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.17 E-value=0.0023 Score=61.13 Aligned_cols=88 Identities=20% Similarity=0.071 Sum_probs=47.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.|+|++|+||||+|+.++...... ...++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999875422 123555555443322221111 111111111112222222333333333
Q ss_pred -ceEEEEecCCCCC
Q 047894 274 -RFLLVLDDVWNED 286 (1087)
Q Consensus 274 -r~LlVlDdv~~~~ 286 (1087)
..+|++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 4899999997654
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.17 E-value=0.0048 Score=69.13 Aligned_cols=179 Identities=16% Similarity=0.152 Sum_probs=95.0
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLADT-------PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~-------~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
.++.|.+..+++|.+.+...- .-+-..++-+.++|++|+|||++|+.+++.... .| +.+..+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~---~f---i~i~~s----- 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA---TF---IRVVGS----- 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE---EEEehH-----
Confidence 468899988888887663210 011134567899999999999999999986431 22 222111
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC-----------CHh---hHHHhhccccc--CCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-----------DYS---LWVDLKAPFLA--AEP 302 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~ 302 (1087)
.+.... ++ .....+...+.......+.+|++|+++.- +.. .+..+...+.. ...
T Consensus 214 -~l~~k~---~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 -EFVQKY---LG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred -HHHHHh---cc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111110 00 11112222333334567899999997431 000 11122222211 224
Q ss_pred CcEEEEEcCCccccc-c-cC---CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 303 NSKMIVTTRNSNVAS-T-MG---PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
+..||.||......+ . .. -...+.++..+.++..++|...... ......... .++++.+.|.-
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CCCCcccCH----HHHHHHcCCCC
Confidence 567787777543332 1 11 2256888888888888888765532 211111122 34666676653
No 172
>PRK08116 hypothetical protein; Validated
Probab=97.15 E-value=0.0018 Score=68.74 Aligned_cols=103 Identities=23% Similarity=0.211 Sum_probs=58.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.++|.+|+|||+||..+++..... ...++++++ .+++..+........ .....+ +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNF------PQLLNRIKSTYKSSG--KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEH------HHHHHHHHHHHhccc--cccHHH----HHHHhcCC
Confidence 358899999999999999999975422 233556653 334444444432211 111222 22333433
Q ss_pred ceEEEEecCCCCCHhhHHH--hhccccc-CCCCcEEEEEcCC
Q 047894 274 RFLLVLDDVWNEDYSLWVD--LKAPFLA-AEPNSKMIVTTRN 312 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~~s~ilvTtr~ 312 (1087)
. ||||||+......+|.. +...+.. -..+..+||||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3 89999996544445543 2222211 1346679999864
No 173
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.11 E-value=0.0071 Score=69.30 Aligned_cols=168 Identities=15% Similarity=0.126 Sum_probs=88.3
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccc--cCCCeEEEEEeCCcc
Q 047894 166 PEVFGREEDKAKILDMVLADT-------PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD--SKFDVKAWVCVSDVF 236 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~-------~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~ 236 (1087)
..+.|.+..+++|.+.+...- .-+...++-+.++|++|+|||++|+.+++...... .......|+.+....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 457789999999888764210 00112345689999999999999999998753221 011233445444321
Q ss_pred cHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh-hCCCceEEEEecCCCCC-------Hhh-----HHHhhccccc--CC
Q 047894 237 DVLGISKALLESITSAASDLKTLNEVQVQLKKA-VDGKRFLLVLDDVWNED-------YSL-----WVDLKAPFLA--AE 301 (1087)
Q Consensus 237 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~--~~ 301 (1087)
+.. .... ........+....++. -.+++.+|+||+++.-- ..+ ...+...+.. ..
T Consensus 262 ----Ll~----kyvG--ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 262 ----LLN----KYVG--ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ----hcc----cccc--hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 100 0000 0000111122222222 23578999999995320 001 1122222221 11
Q ss_pred CCcEEEEEcCCccccc-cc-C---CCceeeCCCCChHhHHHHHHHhh
Q 047894 302 PNSKMIVTTRNSNVAS-TM-G---PIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 302 ~~s~ilvTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
.+..||.||-.....+ .+ . -...+.++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3344555554433222 11 1 12458999999999999998876
No 174
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0055 Score=67.32 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=86.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 270 (1087)
.++..|.+.|++|+|||+||..++.. ..|..+--++-....... +......+...+....
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHccCcc---------------HHHHHHHHHHHHHHhh
Confidence 56678889999999999999999876 367654433322111110 1112223334445555
Q ss_pred CCCceEEEEecCCCCCHhhHHHhhcc---------------cccCCCCcEEEEEcCCcccccccCCC----ceeeCCCCC
Q 047894 271 DGKRFLLVLDDVWNEDYSLWVDLKAP---------------FLAAEPNSKMIVTTRNSNVASTMGPI----EHYNLKSLS 331 (1087)
Q Consensus 271 ~~kr~LlVlDdv~~~~~~~~~~l~~~---------------l~~~~~~s~ilvTtr~~~v~~~~~~~----~~~~l~~L~ 331 (1087)
+..--.||+||+. ...+|..+... .++.++.--|+-||....+...|+-. ..+.++.++
T Consensus 596 kS~lsiivvDdiE--rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIE--RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchh--hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 6677899999993 33445433321 23333344455577777777766533 468899988
Q ss_pred h-HhHHHHHHHhh-cCCCCCCcchhhHHHHHHHHHHh
Q 047894 332 D-DDCWSIFIKHV-FESRDLNAHQISESFRKKVVAKC 366 (1087)
Q Consensus 332 ~-~~~~~lf~~~~-~~~~~~~~~~~~~~~~~~i~~~c 366 (1087)
. ++..+.++..- |. +...+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 7 66667666532 21 223344555555555
No 175
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.023 Score=61.53 Aligned_cols=179 Identities=10% Similarity=0.032 Sum_probs=97.9
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-----cCCCe--EEEEEeCCcccHHHHHHHHH
Q 047894 174 DKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-----SKFDV--KAWVCVSDVFDVLGISKALL 246 (1087)
Q Consensus 174 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-----~~f~~--~~wv~~s~~~~~~~~~~~i~ 246 (1087)
..+.+.+.+..+. -.....+.|+.|+||+++|..++...--.. ..-.| +-++..+..+|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 4456666665432 235778999999999999998765321000 00000 000001111111100
Q ss_pred HHhhcCCCCcccHHHHHH---HHHH-hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCc-ccccccC-
Q 047894 247 ESITSAASDLKTLNEVQV---QLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNS-NVASTMG- 320 (1087)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~-~v~~~~~- 320 (1087)
.......-..++... .+.. ...+++=++|+|+++.-.......+...+-....++.+|++|.+. .+...+.
T Consensus 80 ---~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 ---EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred ---ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 000000112333222 2211 123566688899998777777788777776555667777766653 3332222
Q ss_pred CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHH
Q 047894 321 PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAK 374 (1087)
Q Consensus 321 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 374 (1087)
.-..+.+.++++++..+.+..... . . ...+...++.++|.|+.+.
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~-~-----~---~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSS-A-----E---ISEILTALRINYGRPLLAL 201 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhc-c-----C---hHHHHHHHHHcCCCHHHHH
Confidence 225789999999999988876531 1 1 1124457788999997443
No 176
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.08 E-value=0.0024 Score=68.86 Aligned_cols=121 Identities=22% Similarity=0.297 Sum_probs=71.3
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 170 GREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 170 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
+|........+++..-... ...+-+.++|..|+|||.||..+++....+ .+ .+.+++++ .++.++....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~--~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~-~v~~~~~~------~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG--EKVKGLYLYGDFGVGKSYLLAAIANELAKK--GV-SSTLLHFP------EFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CC-CEEEEEHH------HHHHHHHHHH
Confidence 4555555556666533211 233568999999999999999999986522 23 34566553 3444444443
Q ss_pred hcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHH--hhccccc-C-CCCcEEEEEcC
Q 047894 250 TSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVD--LKAPFLA-A-EPNSKMIVTTR 311 (1087)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~-~~~s~ilvTtr 311 (1087)
.. .+..+. +.. + .+--||||||+..+....|.. +...+.. . ..+-.+|+||-
T Consensus 204 ~~-----~~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 204 SD-----GSVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred hc-----CcHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 22 122222 222 2 245699999998776677854 4444322 1 24567888886
No 177
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.017 Score=62.32 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=98.8
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc------------------cccCCCeEEEEEeCC
Q 047894 173 EDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAV------------------RDSKFDVKAWVCVSD 234 (1087)
Q Consensus 173 ~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~------------------~~~~f~~~~wv~~s~ 234 (1087)
...+++.+.+... .-...+.+.|+.|+||+++|..+....-- .+.|.|.. |+.-..
T Consensus 10 ~~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~ 83 (319)
T PRK06090 10 PVWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH-VIKPEK 83 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecCc
Confidence 3455666666543 23467889999999999999987543210 01133322 221100
Q ss_pred cccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh-----CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEE
Q 047894 235 VFDVLGISKALLESITSAASDLKTLNEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVT 309 (1087)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvT 309 (1087)
....-..++... +.+.+ .+++=++|+|++..-.......+...+-....++.+|++
T Consensus 84 ------------------~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~ 144 (319)
T PRK06090 84 ------------------EGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLV 144 (319)
T ss_pred ------------------CCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 000112233221 22222 345568999999877777788887777655556666666
Q ss_pred cCC-cccccccC-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 310 TRN-SNVASTMG-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 310 tr~-~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
|.+ ..+...+. .-..+.+.+++++++.+.+.... .. .+..+++.++|.|+.+..+
T Consensus 145 t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 145 THNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc-------hHHHHHHHcCCCHHHHHHH
Confidence 554 34433222 22578999999999998886531 00 1245788999999977655
No 178
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.07 E-value=0.0062 Score=75.32 Aligned_cols=52 Identities=23% Similarity=0.409 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++|.++.+++|.+++............++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999887653211111233578999999999999999999864
No 179
>PRK08118 topology modulation protein; Reviewed
Probab=97.06 E-value=0.00029 Score=68.88 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=28.8
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEE
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAW 229 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~w 229 (1087)
-|.|+|++|+||||+|+.+++......-+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47999999999999999999887655336777776
No 180
>PRK10536 hypothetical protein; Provisional
Probab=97.04 E-value=0.015 Score=59.71 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=73.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEE--e--CCc-----cc
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVC--V--SDV-----FD 237 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~--~--s~~-----~~ 237 (1087)
.+.+|......++.++.+. .+|.++|.+|+|||+||..+..+.-..+ .|+..+-+. + +.. -+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCC
Confidence 4667888888888888542 3899999999999999999877532222 444333221 1 000 01
Q ss_pred ----HHHHHHHHHHHhhcCCCCcccHHHHHH--------HHHHhhCCCce---EEEEecCCCCCHhhHHHhhcccccCCC
Q 047894 238 ----VLGISKALLESITSAASDLKTLNEVQV--------QLKKAVDGKRF---LLVLDDVWNEDYSLWVDLKAPFLAAEP 302 (1087)
Q Consensus 238 ----~~~~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 302 (1087)
....+.-+.+.+..-. +....+.... .--.+++|+.+ +||+|++...+......+.. ..+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCC
Confidence 1111222222221100 0011111110 01135567655 99999998776544444443 3457
Q ss_pred CcEEEEEcCCcc
Q 047894 303 NSKMIVTTRNSN 314 (1087)
Q Consensus 303 ~s~ilvTtr~~~ 314 (1087)
+|++|+|=-..+
T Consensus 203 ~sk~v~~GD~~Q 214 (262)
T PRK10536 203 NVTVIVNGDITQ 214 (262)
T ss_pred CCEEEEeCChhh
Confidence 999999865443
No 181
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.04 E-value=8.2e-05 Score=66.25 Aligned_cols=91 Identities=29% Similarity=0.292 Sum_probs=67.7
Q ss_pred cCCCCcccEEEecCCCCcccCccccCC-ccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCE
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEEL-RLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNH 652 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l-~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 652 (1087)
+.+...|...+|++|.+..+|..|... +....|+|++|.|..+|..+..++.|+.|+++.|. +...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHH
Confidence 455567777888888888887776544 37788888888888888888888888888888865 6677777777888888
Q ss_pred EeecCCccccccCc
Q 047894 653 LDIRGAKLLKEMPC 666 (1087)
Q Consensus 653 L~l~~~~~~~~~p~ 666 (1087)
|+..+|. ...+|.
T Consensus 128 Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 128 LDSPENA-RAEIDV 140 (177)
T ss_pred hcCCCCc-cccCcH
Confidence 8877776 334443
No 182
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.02 E-value=0.026 Score=62.00 Aligned_cols=206 Identities=15% Similarity=0.224 Sum_probs=122.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHhccccccccCCCeEEEEEeCCc---ccHHHHHHHHH
Q 047894 171 REEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLA-REVYNDKAVRDSKFDVKAWVCVSDV---FDVLGISKALL 246 (1087)
Q Consensus 171 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~ 246 (1087)
|.+..++|..||..... ..|.|.|+-|+||+.|+ .++.++.+. ++.+.+.+. .+-..+...++
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~~-------vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRKN-------VLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCCC-------EEEEEChHhhhccChHHHHHHHH
Confidence 56778999999986543 69999999999999999 788776331 344443221 11222333333
Q ss_pred HHh-----------------------hcCCCCc-ccHHH-HH-------HHHHH-------------------hh---CC
Q 047894 247 ESI-----------------------TSAASDL-KTLNE-VQ-------VQLKK-------------------AV---DG 272 (1087)
Q Consensus 247 ~~l-----------------------~~~~~~~-~~~~~-~~-------~~l~~-------------------~l---~~ 272 (1087)
.++ .+...+. .+.+. +. ..|++ +| ..
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 332 2222211 12221 11 11211 01 12
Q ss_pred CceEEEEecCCCCC---------HhhHHHhhcccccCCCCcEEEEEcCCccccccc------CCCceeeCCCCChHhHHH
Q 047894 273 KRFLLVLDDVWNED---------YSLWVDLKAPFLAAEPNSKMIVTTRNSNVASTM------GPIEHYNLKSLSDDDCWS 337 (1087)
Q Consensus 273 kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~~~------~~~~~~~l~~L~~~~~~~ 337 (1087)
+|-+||+|+.-... ..+|..... ..+-.+||++|-+......+ .....+.|...+.+.|..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 36799999984432 134543222 34567899999876555432 223678899999999999
Q ss_pred HHHHhhcCCCCC------------Ccc----hhhHHHHHHHHHHhCCchhHHHHHHhhhcCC-C-HHHHHHHHh
Q 047894 338 IFIKHVFESRDL------------NAH----QISESFRKKVVAKCGGLALAAKTLGGLLRTT-R-HDAWDDILE 393 (1087)
Q Consensus 338 lf~~~~~~~~~~------------~~~----~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~-~-~~~w~~~~~ 393 (1087)
+...+....... ... .....-....++..||=-.-+..+++.++.. + .+...++..
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999887543111 000 1233445678889999999999999998876 3 344555544
No 183
>CHL00176 ftsH cell division protein; Validated
Probab=97.01 E-value=0.0095 Score=70.84 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=94.9
Q ss_pred CccccchhhHHHHHHHH---hcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMV---LADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l---~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
.+++|.++.++++.+.+ ..... -+....+-|.++|++|+|||++|+.+++...+ . |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~---p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV---P-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C-----eeeccHH----
Confidence 45788877666655543 32211 01123456899999999999999999875321 1 2333211
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC----------HhhH----HHhhccccc--CCCC
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED----------YSLW----VDLKAPFLA--AEPN 303 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~--~~~~ 303 (1087)
++. .... ......+...+.+.....+.+|++||++.-. ...+ ..+...+.. ...+
T Consensus 251 ~f~----~~~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFV----EMFV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----HHhh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 0000 0111223334555556788999999994321 1122 222222211 2345
Q ss_pred cEEEEEcCCccccc-cc----CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCC
Q 047894 304 SKMIVTTRNSNVAS-TM----GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGG 368 (1087)
Q Consensus 304 s~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 368 (1087)
-.||.||...+..+ .+ .-...+.++..+.++-.+++..++.... .. .......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LS----PDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cc----hhHHHHHHHhcCCC
Confidence 56666665533222 11 1225688888888888888888764311 11 12234567788777
No 184
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.00026 Score=71.61 Aligned_cols=85 Identities=22% Similarity=0.279 Sum_probs=48.4
Q ss_pred CCCCcccEEEecCCCCccc---CccccCCccceeeccCCCcCccccccc-ccCCCCcEEEecCCCC-CcccCcccCCCCC
Q 047894 575 PKFKRLRMLSLQGYCIGEL---PIPFEELRLLRFLNLADIDIKSLPEST-CKLLNLEILILRNCSR-LIKLPPKMRNLIN 649 (1087)
Q Consensus 575 ~~~~~Lr~L~l~~~~i~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~-l~~lp~~i~~L~~ 649 (1087)
..++.++.|||.+|.|+.- -..+.+|++|++|+|+.|.+..--.+. -.+.+|++|-|.+... .......+..+++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3456777777777776432 233457777777777777644211111 2455777777766331 1223334556666
Q ss_pred cCEEeecCCc
Q 047894 650 LNHLDIRGAK 659 (1087)
Q Consensus 650 L~~L~l~~~~ 659 (1087)
++.|+++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6677666664
No 185
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.99 E-value=0.0039 Score=64.76 Aligned_cols=173 Identities=20% Similarity=0.209 Sum_probs=97.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc-----HHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD-----VLG 240 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-----~~~ 240 (1087)
..++|-.++..++-+++....-- +...-|.|+|+.|.|||+|...+..+... .-+..+-|...+... ..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~~q~---~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSDIQE---NGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhhHHh---cCCeEEEEEECccchhhHHHHHH
Confidence 35789988888888887643211 22245789999999999999988887221 223345555554432 233
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHhhC------CCceEEEEecCCCCCHhhHHHhh-ccc----ccCCCCcEEEEE
Q 047894 241 ISKALLESITSAASDLKTLNEVQVQLKKAVD------GKRFLLVLDDVWNEDYSLWVDLK-APF----LAAEPNSKMIVT 309 (1087)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~l~-~~l----~~~~~~s~ilvT 309 (1087)
+.+++..++........+..+....+-..|+ +-++++|+|..+-.....-..+. ..| ....|-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 4444444333322222233333334444442 23588888877443211111111 111 123456778899
Q ss_pred cCCcc-------cccccCCCceeeCCCCChHhHHHHHHHhh
Q 047894 310 TRNSN-------VASTMGPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 310 tr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
||-.. |-.......++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99642 33333333456678888888888888765
No 186
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.025 Score=61.10 Aligned_cols=97 Identities=9% Similarity=0.097 Sum_probs=63.4
Q ss_pred CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC-cccccccC-CCceeeCCCCChHhHHHHHHHhhcCCCC
Q 047894 271 DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN-SNVASTMG-PIEHYNLKSLSDDDCWSIFIKHVFESRD 348 (1087)
Q Consensus 271 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~-~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 348 (1087)
.+++-++|+|++..-....-..+...+-....++.+|++|.. ..+...+. .-..+.+.+++.+++...+....
T Consensus 111 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----- 185 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----- 185 (319)
T ss_pred cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----
Confidence 356679999999776666666666666544456767766654 33332222 12568899999999988886531
Q ss_pred CCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 349 LNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 349 ~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
. + ...+..++..++|.|+.+..+.
T Consensus 186 ~--~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 V--S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C--C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1 2235568999999999776544
No 187
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.92 E-value=0.014 Score=68.38 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=92.4
Q ss_pred CccccchhhHHHHHHHHh---cCC---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVL---ADT---PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~---~~~---~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
.+++|.++.++++.+++. ... ..+....+-+.++|++|+|||++|+.+++.... . ++.++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---~-----~~~i~~~---- 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV---P-----FFSISGS---- 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---C-----eeeccHH----
Confidence 467888877766655443 111 001123455889999999999999999876321 2 2222211
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC----------HhhHHHhhccc----c--cCCCC
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED----------YSLWVDLKAPF----L--AAEPN 303 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~~l----~--~~~~~ 303 (1087)
++. .... ......+...+.......+.+|+|||++.-. ...+......+ . ....+
T Consensus 123 ~~~----~~~~-----g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFV----EMFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHH----HHHh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111 1100 0112223334444445677899999984311 11222222111 1 12234
Q ss_pred cEEEEEcCCccc-cccc----CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCc
Q 047894 304 SKMIVTTRNSNV-ASTM----GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGL 369 (1087)
Q Consensus 304 s~ilvTtr~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 369 (1087)
-.||.||..... ...+ .-...+.++..+.++-.++|......... .... ....+++.+.|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~----~l~~la~~t~G~ 259 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDV----DLKAVARRTPGF 259 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccch----hHHHHHHhCCCC
Confidence 456666654332 1111 12356888988888888888876533211 1111 234688888773
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.91 E-value=0.014 Score=62.10 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=33.5
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHH
Q 047894 174 DKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGI 241 (1087)
Q Consensus 174 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 241 (1087)
-++++..++... ..|.+.|++|+|||++|+.+..... ....+++.....+..++
T Consensus 10 l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~~lg------~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 10 VTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVARKRD------RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHHHhC------CCEEEEeCCccCCHHHH
Confidence 345555555432 3467999999999999999986321 12345555554444443
No 189
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.90 E-value=0.029 Score=64.39 Aligned_cols=207 Identities=17% Similarity=0.120 Sum_probs=122.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc---cc--ccCCCeEEEEEeCCcccHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA---VR--DSKFDVKAWVCVSDVFDVLG 240 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~---~~--~~~f~~~~wv~~s~~~~~~~ 240 (1087)
..+-+|+.|..+|.+.+...-.. .+....+.|.|.+|+|||..+..|.+... .+ -..|+ .+.|+.-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34668999999998887653322 13345899999999999999999988432 11 12453 34555555667889
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHhh-----CCCceEEEEecCCCCCHhhHHHhhccccc-CCCCcEEEEEcCCc-
Q 047894 241 ISKALLESITSAASDLKTLNEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLA-AEPNSKMIVTTRNS- 313 (1087)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~~s~ilvTtr~~- 313 (1087)
++..|.+.+..... ........+..+. +.+..++++|+++.--....+-+...|.+ ..++||++|-+=..
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 99999999876543 2222233333333 24568888998732100011222233332 45678777654321
Q ss_pred ----------ccccccCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhh
Q 047894 314 ----------NVASTMGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGL 379 (1087)
Q Consensus 314 ----------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~ 379 (1087)
.++..++- ..+...+.+.++-.++...+..+.... .....+-++++++.-.|..-.|+.+.-++
T Consensus 551 mdlPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~f-~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDAF-ENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccCHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhhc-chhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 12222222 457778888888888887776544222 23344555666766666666666554443
No 190
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.89 E-value=0.0017 Score=66.26 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=28.0
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEe
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCV 232 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 232 (1087)
-++|+|..|+||||++..+..... ..|.++++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~---~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR---HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc---ccCCEEEEEec
Confidence 578999999999999999987643 37877776654
No 191
>PRK07261 topology modulation protein; Provisional
Probab=96.86 E-value=0.002 Score=63.40 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=41.0
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKR 274 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (1087)
.|.|+|++|+||||||+.+........-+.|...|-.... ..+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ---------------------ERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc---------------------cCCHHHHHHHHHHHHhCCC
Confidence 3789999999999999999876433222445555521111 1123445555566666655
Q ss_pred eEEEEecCCC
Q 047894 275 FLLVLDDVWN 284 (1087)
Q Consensus 275 ~LlVlDdv~~ 284 (1087)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 67788743
No 192
>PRK12377 putative replication protein; Provisional
Probab=96.86 E-value=0.0043 Score=64.47 Aligned_cols=100 Identities=20% Similarity=0.106 Sum_probs=55.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.++|.+|+|||+||..+++..... ...++++++. ++...+-..... ....... .+.+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~----l~~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVP------DVMSRLHESYDN----GQSGEKF----LQEL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHH------HHHHHHHHHHhc----cchHHHH----HHHh-cC
Confidence 468999999999999999999876422 2334666543 333333333221 1111221 2222 35
Q ss_pred ceEEEEecCCCCCHhhHHH--hhccccc-CCCCcEEEEEcC
Q 047894 274 RFLLVLDDVWNEDYSLWVD--LKAPFLA-AEPNSKMIVTTR 311 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~~s~ilvTtr 311 (1087)
--||||||+.......|.. +...+.. -...-.+||||-
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 6699999995554444532 2222221 122345677775
No 193
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.038 Score=58.42 Aligned_cols=188 Identities=18% Similarity=0.192 Sum_probs=100.9
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..+=|-++.+++|.+.+.-+-. =+-..++=|.++|++|.|||-||++|++... ..| +-|...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~---AtF-----IrvvgS--- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD---ATF-----IRVVGS--- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC---ceE-----EEeccH---
Confidence 3466788888888887643211 0124557789999999999999999999744 233 333322
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh-CCCceEEEEecCCCC-----------CHhhH---HHhhcccccC--C
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAV-DGKRFLLVLDDVWNE-----------DYSLW---VDLKAPFLAA--E 301 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-----------~~~~~---~~l~~~l~~~--~ 301 (1087)
++.+..-. +-..+.+.+.+.- ...+.+|++|.++.- +.+.. -++...+-.. .
T Consensus 220 -----ElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 -----ELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred -----HHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 11221111 0111222333332 356889999988331 11111 2233333332 2
Q ss_pred CCcEEEEEcCCcccccc--cCC---CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh----H
Q 047894 302 PNSKMIVTTRNSNVAST--MGP---IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL----A 372 (1087)
Q Consensus 302 ~~s~ilvTtr~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL----a 372 (1087)
..-|||..|-..++.+. +.+ .+.++++.-+.+.-.++|.-++ ......+.-.++ .|++.|.|.-= |
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt-rkM~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT-RKMNLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh-hhccCccCcCHH----HHHHhcCCCchHHHHH
Confidence 34688988876655432 122 2567887555555556666554 333333333333 47777777553 3
Q ss_pred HHHHHhhh
Q 047894 373 AKTLGGLL 380 (1087)
Q Consensus 373 i~~~~~~l 380 (1087)
+.+=|+++
T Consensus 364 ictEAGm~ 371 (406)
T COG1222 364 ICTEAGMF 371 (406)
T ss_pred HHHHHhHH
Confidence 44444544
No 194
>PTZ00494 tuzin-like protein; Provisional
Probab=96.85 E-value=0.096 Score=57.06 Aligned_cols=170 Identities=11% Similarity=0.153 Sum_probs=106.9
Q ss_pred CCCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHH
Q 047894 161 SVPTEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLG 240 (1087)
Q Consensus 161 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 240 (1087)
.+.....+|.|+.|-..+.+.|.+... ..++++++.|.-|.||++|.+.......+ ..++|.+.... +
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~------paV~VDVRg~E---D 433 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV------ALVHVDVGGTE---D 433 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC------CeEEEEecCCc---c
Confidence 344567899999999999888877654 56799999999999999999998876442 34778877654 4
Q ss_pred HHHHHHHHhhcCCCC--cccHHHHHH---HHHHhhCCCceEEEEecCCCCC-HhhHHHhhcccccCCCCcEEEEEcCCcc
Q 047894 241 ISKALLESITSAASD--LKTLNEVQV---QLKKAVDGKRFLLVLDDVWNED-YSLWVDLKAPFLAAEPNSKMIVTTRNSN 314 (1087)
Q Consensus 241 ~~~~i~~~l~~~~~~--~~~~~~~~~---~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~~s~ilvTtr~~~ 314 (1087)
.++.+.+.++.+..+ .+-++-..+ .-.....++.-+||+-==...+ ...+.+. ..|.....-|.|++----+.
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplES 512 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKA 512 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhh
Confidence 577888888876542 122222222 2223345676777765321111 1122222 12334455678877544333
Q ss_pred ccccc---CCCceeeCCCCChHhHHHHHHHhh
Q 047894 315 VASTM---GPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 315 v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
..-.. .....|.+++++.++|.++..+..
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 22111 112468899999999998887654
No 195
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.84 E-value=0.017 Score=65.10 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=87.5
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKR 274 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (1087)
++.|.|+-++||||+++.+..... . . .+++...+......-+.+. ...+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~--~-~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL--E-E---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC--c-c---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCC
Confidence 899999999999999977765432 1 1 4555544332111111111 111221112278
Q ss_pred eEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCccccc-----c-cCCCceeeCCCCChHhHHHHHHHhhcCCCC
Q 047894 275 FLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVAS-----T-MGPIEHYNLKSLSDDDCWSIFIKHVFESRD 348 (1087)
Q Consensus 275 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~-----~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 348 (1087)
..|+||.|... ..|......+.+..+. +|++|+-+..... . .|....+.+.||+..|...+-...+
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----- 167 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----- 167 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----
Confidence 89999999665 6798888888776655 8998888754332 1 2334678999999998765432000
Q ss_pred CCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 349 LNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 349 ~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
. .... ...-+=.-..||.|-++..-
T Consensus 168 -~-~~~~-~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 168 -E-PSKL-ELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred -c-hhHH-HHHHHHHHHhCCCcHHHhCc
Confidence 0 0011 11222334578888887653
No 196
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.84 E-value=0.0067 Score=68.14 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=37.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.++||++.++.+...+..+. -|.+.|++|+|||++|+.+....
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHh
Confidence 48999999999999887653 48999999999999999998754
No 197
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.84 E-value=0.0073 Score=65.59 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=64.4
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCe-EEEEEeCC-cccHHHHHHHHHHHhhc
Q 047894 174 DKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDV-KAWVCVSD-VFDVLGISKALLESITS 251 (1087)
Q Consensus 174 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~ 251 (1087)
-..++++.+..-.. ..-+.|+|.+|+|||||++.+++..... +-+. ++|+.+.. ..++.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiGk-----GQR~LIvG~pGtGKTTLl~~la~~i~~~--~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIGK-----GQRGLIVAPPRAGKTVLLQQIAAAVAAN--HPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecCC-----CceEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 34558888765432 2356999999999999999988864321 3344 36766664 45677788888776665
Q ss_pred CCCCcccHHH-----HHHHHHHhh--CCCceEEEEecC
Q 047894 252 AASDLKTLNE-----VQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 252 ~~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
...+...... ....+.+++ ++++++||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 4332222111 111222222 589999999999
No 198
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.84 E-value=0.002 Score=63.68 Aligned_cols=99 Identities=23% Similarity=0.249 Sum_probs=51.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
.-+.++|.+|+|||.||..+.+....+ . ..+.|+.+ .+++.. +..... ..........+ . +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~--g-~~v~f~~~------~~L~~~----l~~~~~-~~~~~~~~~~l----~-~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK--G-YSVLFITA------SDLLDE----LKQSRS-DGSYEELLKRL----K-R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T---EEEEEH------HHHHHH----HHCCHC-CTTHCHHHHHH----H-T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC--C-cceeEeec------Cceecc----cccccc-ccchhhhcCcc----c-c
Confidence 468999999999999999998865432 2 23566653 233333 332211 12222222222 2 2
Q ss_pred ceEEEEecCCCCCHhhHHH--hhccccc-CCCCcEEEEEcCC
Q 047894 274 RFLLVLDDVWNEDYSLWVD--LKAPFLA-AEPNSKMIVTTRN 312 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~~s~ilvTtr~ 312 (1087)
-=||||||+.......|.. +...+.. -..+ .+||||.-
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 3588899997766555543 1111111 1123 57888874
No 199
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.038 Score=60.59 Aligned_cols=171 Identities=14% Similarity=0.067 Sum_probs=99.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc-----c--------------cccCCCeEEEEEeC
Q 047894 173 EDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA-----V--------------RDSKFDVKAWVCVS 233 (1087)
Q Consensus 173 ~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~-----~--------------~~~~f~~~~wv~~s 233 (1087)
...+++.+.+..+. -.....+.|+.|+||+++|..++...- . .+.|.|.. ++.-.
T Consensus 9 ~~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~ 82 (334)
T PRK07993 9 PDYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYY-TLTPE 82 (334)
T ss_pred HHHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecc
Confidence 34566777775542 346788999999999999988654321 0 01133322 11100
Q ss_pred CcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH----hhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEE
Q 047894 234 DVFDVLGISKALLESITSAASDLKTLNEVQVQLKK----AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVT 309 (1087)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvT 309 (1087)
.. ...-..++..+.... -..+++=++|+|+++.-.......+...+-....++.+|++
T Consensus 83 ~~------------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~ 144 (334)
T PRK07993 83 KG------------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLA 144 (334)
T ss_pred cc------------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 00 001123332222111 12466779999999777767777777777655556666666
Q ss_pred cCC-ccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 310 TRN-SNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 310 tr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
|.+ ..+...+ +.-..+.+.+++++++.+.+.... + ...+.+..+++.++|.|..+..+
T Consensus 145 t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~--------~~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 145 CREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T--------MSQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred ECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C--------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 654 3343222 222568899999999888876532 1 11223567899999999755443
No 200
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.031 Score=61.58 Aligned_cols=148 Identities=10% Similarity=0.045 Sum_probs=87.2
Q ss_pred ccc-chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc-------------------ccCCCeE
Q 047894 168 VFG-REEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVR-------------------DSKFDVK 227 (1087)
Q Consensus 168 ~vG-r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~-------------------~~~f~~~ 227 (1087)
++| -+..++.+...+... .-.....++|+.|+||||+|+.+.+..--. +.|.|..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~ 81 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH 81 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE
Confidence 556 566677777777543 234677899999999999999885542100 0022221
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccccCCCC
Q 047894 228 AWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPN 303 (1087)
Q Consensus 228 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 303 (1087)
.....+. ....++....+... ..+++=++|+|++..-.......+...+.....+
T Consensus 82 ~i~~~~~---------------------~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 82 LVAPDGQ---------------------SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred Eeccccc---------------------cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 1111000 11222222222111 2355668999999776666677777777655567
Q ss_pred cEEEEEcCCc-cccccc-CCCceeeCCCCChHhHHHHHHH
Q 047894 304 SKMIVTTRNS-NVASTM-GPIEHYNLKSLSDDDCWSIFIK 341 (1087)
Q Consensus 304 s~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 341 (1087)
+.+|++|.+. .+...+ .....+++.++++++..+.+..
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 7777776643 333222 2225799999999998887765
No 201
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.029 Score=63.12 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=97.1
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPR------DHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~------~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
..+-|.+....++.+++..-... +-..++=|.++|++|+|||.||+.+++...+ -++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--------Pf~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--------PFLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--------ceEeecch----
Confidence 45778999998888887652210 1134567899999999999999999987553 12333322
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCH-hhH----------HHhhcc---ccc-CCCCc
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY-SLW----------VDLKAP---FLA-AEPNS 304 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~----------~~l~~~---l~~-~~~~s 304 (1087)
+|+.++. ..+.+.+.+.+.+....-++++++|+++-... .+| .++... +.. ...|-
T Consensus 258 ----eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 2222222 22334445555666677899999999844211 111 111111 111 11233
Q ss_pred EEEE---EcCCccccccc---CC-CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCc
Q 047894 305 KMIV---TTRNSNVASTM---GP-IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGL 369 (1087)
Q Consensus 305 ~ilv---Ttr~~~v~~~~---~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 369 (1087)
.||| |+|...+-..+ |. .+.|.+.--++.+-.+++...+-+-+... .-.. ++|++.+-|.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~----~qlA~lTPGf 395 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDF----KQLAKLTPGF 395 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCH----HHHHhcCCCc
Confidence 3443 66655443322 22 24577776677666667666553322211 1122 4566666553
No 202
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.75 E-value=0.015 Score=56.50 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=71.7
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc------------------ccCCCeEEEEE
Q 047894 170 GREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVR------------------DSKFDVKAWVC 231 (1087)
Q Consensus 170 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~------------------~~~f~~~~wv~ 231 (1087)
|-++..+.+.+.+.... -...+.++|+.|+||+++|..+.+..--. +.+.|. .|+.
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDF-IIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTE-EEEE
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcce-EEEe
Confidence 45667777887776543 23467899999999999999876643111 112232 2222
Q ss_pred eCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh-----CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEE
Q 047894 232 VSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKM 306 (1087)
Q Consensus 232 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 306 (1087)
-.... ..-..++.. .+.+.+ .+++=++|+||++.-....+..+...+-....++.+
T Consensus 75 ~~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 75 PDKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred ccccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 22110 011223332 222222 345668999999888888888888887766678898
Q ss_pred EEEcCCcc
Q 047894 307 IVTTRNSN 314 (1087)
Q Consensus 307 lvTtr~~~ 314 (1087)
|++|.+..
T Consensus 136 iL~t~~~~ 143 (162)
T PF13177_consen 136 ILITNNPS 143 (162)
T ss_dssp EEEES-GG
T ss_pred EEEECChH
Confidence 88888654
No 203
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.75 E-value=0.0078 Score=62.38 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=56.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.++|.+|+|||+||..+++.....+ ..++++++ .++...+-..... .....+. +.+.+. +
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 4689999999999999999998754322 34455543 3334333333211 0111222 223344 3
Q ss_pred ceEEEEecCCCCCHhhHHH-hhccccc--CCCCcEEEEEcC
Q 047894 274 RFLLVLDDVWNEDYSLWVD-LKAPFLA--AEPNSKMIVTTR 311 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~-l~~~l~~--~~~~s~ilvTtr 311 (1087)
.=+|||||+......+|.. +.-.+.. -...-.+||||-
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 5588999997765556653 2222221 122456777775
No 204
>PRK08181 transposase; Validated
Probab=96.74 E-value=0.0035 Score=65.96 Aligned_cols=99 Identities=18% Similarity=0.059 Sum_probs=53.0
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKR 274 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (1087)
-+.++|++|+|||.||..+.+..... ...+.|+++ .++...+..... ....+.....+ .+.
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~ 168 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----DKF 168 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHc---CCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----hcC
Confidence 58999999999999999998754322 223455543 334444432211 11222222222 234
Q ss_pred eEEEEecCCCCCHhhHH--HhhcccccCCCCcEEEEEcCC
Q 047894 275 FLLVLDDVWNEDYSLWV--DLKAPFLAAEPNSKMIVTTRN 312 (1087)
Q Consensus 275 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~~s~ilvTtr~ 312 (1087)
-||||||+.......|. .+...+...-.+..+||||..
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 59999999654332332 222222211112468888874
No 205
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.69 E-value=0.016 Score=57.50 Aligned_cols=120 Identities=21% Similarity=0.275 Sum_probs=69.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|.+..++.+.+--..-..+ ..-.-|.+||.-|+|||+|++++.+.+..++ -. -|-|+.. ++
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G--~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g---lr--LVEV~k~-dl------- 124 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEG--LPANNVLLWGARGTGKSSLVKALLNEYADEG---LR--LVEVDKE-DL------- 124 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcC--CcccceEEecCCCCChHHHHHHHHHHHHhcC---Ce--EEEEcHH-HH-------
Confidence 46899998888887643221110 1224578999999999999999998765332 11 2333321 11
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhcccccC---CCCcEEEEEcCCc
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLAA---EPNSKMIVTTRNS 313 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~~s~ilvTtr~~ 313 (1087)
..+..+...++ ....||+|+.||+.-+ +...+..+...+-.+ .+...++..|.++
T Consensus 125 -----------~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 125 -----------ATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------hhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11222222222 1467999999999433 335667777766543 3344455555443
No 206
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0044 Score=73.33 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=77.4
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++|-++.++.+.+.+..... ....+..+...+|+.|||||-||+.++...--. =+..+-+.+|..-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~---e~aliR~DMSEy~Ek---- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD---EQALIRIDMSEYMEK---- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC---CccceeechHHHHHH----
Confidence 4689999999999998865432 112455688889999999999999987752100 033444444433221
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhhCCCce-EEEEecCCCCCHhhHHHhhccccc
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAVDGKRF-LLVLDDVWNEDYSLWVDLKAPFLA 299 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~ 299 (1087)
+.+.+-++.++ +-...++ ...+-+.++.++| +|.||++...+.+..+.+...|-+
T Consensus 564 HsVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 564 HSVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 22233334332 2222222 2245556678888 888999988777777777776654
No 207
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.69 E-value=0.032 Score=54.82 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=61.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
.++||-++.++++.-.-.+. ...-+.|.||+|+||||-+..+++..-... +=+.+.=.++|+.
T Consensus 27 ~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr~LLG~~-~ke~vLELNASde---------- 89 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLARELLGDS-YKEAVLELNASDE---------- 89 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHHHHhChh-hhhHhhhccCccc----------
Confidence 46899999999887665443 335678999999999998888776542111 2223333333333
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhh-------CCCceEEEEecCCCCCHhhHHHhhc
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAV-------DGKRFLLVLDDVWNEDYSLWVDLKA 295 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l-------~~kr~LlVlDdv~~~~~~~~~~l~~ 295 (1087)
...+-...+++.+- .++.=+||||.+++.......++++
T Consensus 90 -----------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRR 135 (333)
T KOG0991|consen 90 -----------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRR 135 (333)
T ss_pred -----------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHH
Confidence 22333333333222 3555689999997765444444444
No 208
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.66 E-value=0.00018 Score=81.33 Aligned_cols=81 Identities=27% Similarity=0.323 Sum_probs=38.4
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCCCCCcccCcccCCCCCcCE
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNCSRLIKLPPKMRNLINLNH 652 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 652 (1087)
+.-++.|+.|+|++|.+... ..+..|.+|++|||+.|.+..+|. +...+. |+.|++++|. ++++- ++.+|.+|++
T Consensus 183 Lqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~-gie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLR-GIENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhh-hHHhhhhhhc
Confidence 34444555555555555444 244455555555555555555443 222222 5555555533 33332 2455555555
Q ss_pred EeecCC
Q 047894 653 LDIRGA 658 (1087)
Q Consensus 653 L~l~~~ 658 (1087)
||++.|
T Consensus 259 LDlsyN 264 (1096)
T KOG1859|consen 259 LDLSYN 264 (1096)
T ss_pred cchhHh
Confidence 555544
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.64 E-value=0.0019 Score=69.79 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=43.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.++|.++.++++++++.....+.....+++.++|++|+||||||+.+.+...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999765432224568999999999999999999987654
No 210
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.62 E-value=0.017 Score=71.98 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=75.1
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++|.+..++.+...+..... .......++.++|+.|+|||++|+.+++..... -...+.+.++......
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~---~~~~i~id~se~~~~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS---DDAMVRIDMSEFMEKH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC---CCcEEEEEhHHhhhhh---
Confidence 4588999999998888864321 111233578899999999999999998653211 1223444443321111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhhCCC-ceEEEEecCCCCCHhhHHHhhcccccC-----------CCCcEEEEEc
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAVDGK-RFLLVLDDVWNEDYSLWVDLKAPFLAA-----------EPNSKMIVTT 310 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~ilvTt 310 (1087)
....-++.+ +.....++ ...+.+.++.+ .-+|+|||+...+...+..+...+..+ ...+.||+||
T Consensus 642 -~~~~LiG~~-pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 642 -SVSRLVGAP-PGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred -hHHHHhCCC-Ccccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 111112221 11111111 11122333223 359999999877777777776655332 1223477777
Q ss_pred CC
Q 047894 311 RN 312 (1087)
Q Consensus 311 r~ 312 (1087)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 65
No 211
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.60 E-value=0.033 Score=61.88 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc
Q 047894 172 EEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAV 219 (1087)
Q Consensus 172 ~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~ 219 (1087)
+.-.+.+.+.+..... ....+|+|.|.=|+||||+.+.+.+....
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3445677777766532 45589999999999999999999876553
No 212
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.59 E-value=0.009 Score=59.60 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=63.9
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc--cc-----------
Q 047894 171 REEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV--FD----------- 237 (1087)
Q Consensus 171 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~----------- 237 (1087)
+..+....++.+... .+|.+.|++|.|||.||....-+.-..+ .|+..+++.-.-. .+
T Consensus 5 ~~~~Q~~~~~al~~~--------~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 5 KNEEQKFALDALLNN--------DLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--TT----SS-------
T ss_pred CCHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCccccccCCCCHHHH
Confidence 445566677777632 4899999999999999998876654343 8887777642111 00
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHH------HHHhhCCC---ceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEE
Q 047894 238 VLGISKALLESITSAASDLKTLNEVQVQ------LKKAVDGK---RFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIV 308 (1087)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilv 308 (1087)
......-+...+..-. .....+.+... --.+++|+ ..+||+|++.+....++..+... .+.+||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEE
Confidence 0001111111111100 11222222211 01344565 35999999988776666666443 457999999
Q ss_pred EcCCc
Q 047894 309 TTRNS 313 (1087)
Q Consensus 309 Ttr~~ 313 (1087)
+=-..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 86543
No 213
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.58 E-value=0.0087 Score=74.16 Aligned_cols=136 Identities=14% Similarity=0.114 Sum_probs=75.2
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.+|+.+....-. .....+-+.++...+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~---~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG---GEQNLITINMSEFQEA---- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC---CCcceEEEeHHHhhhh----
Confidence 4689999999999998854211 11134568899999999999999988765321 1122222333222111
Q ss_pred HHHHHHhhcCCC--CcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCC-----------CCcEEEEE
Q 047894 243 KALLESITSAAS--DLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAE-----------PNSKMIVT 309 (1087)
Q Consensus 243 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~ilvT 309 (1087)
..+..-++.+.. +......+...++ +...-+|+||++...+...+..+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111111222111 1111122233333 2344699999998777777776665554332 34566666
Q ss_pred cC
Q 047894 310 TR 311 (1087)
Q Consensus 310 tr 311 (1087)
|-
T Consensus 716 SN 717 (852)
T TIGR03345 716 SN 717 (852)
T ss_pred CC
Confidence 65
No 214
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.56 E-value=0.012 Score=73.44 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=77.5
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++|.+..++.+.+.+..... .......++.++|+.|+|||++|+.+....... -...+.+.++...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~---~~~~i~~d~s~~~~~~~-- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD---EDAMVRIDMSEYMEKHS-- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhhcccch--
Confidence 4689999999999998875321 111234678899999999999999998753211 12234444443222111
Q ss_pred HHHHHHhhcCCC--CcccHHHHHHHHHHhhCCCc-eEEEEecCCCCCHhhHHHhhcccccC-----------CCCcEEEE
Q 047894 243 KALLESITSAAS--DLKTLNEVQVQLKKAVDGKR-FLLVLDDVWNEDYSLWVDLKAPFLAA-----------EPNSKMIV 308 (1087)
Q Consensus 243 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~ilv 308 (1087)
....++.+.. +...... +.+.++.++ .+|+||++...+...+..+...+..+ -..+-||+
T Consensus 640 --~~~l~g~~~g~~g~~~~g~----l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQ----LTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred --HHHhcCCCCCccCcccccH----HHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 1111222111 1111122 223333333 49999999888877787777766432 13344777
Q ss_pred EcCC
Q 047894 309 TTRN 312 (1087)
Q Consensus 309 Ttr~ 312 (1087)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7763
No 215
>PRK06921 hypothetical protein; Provisional
Probab=96.56 E-value=0.0084 Score=63.45 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=27.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEe
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCV 232 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 232 (1087)
..+.++|..|+|||+||..+++....+ .-..+++++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~--~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRK--KGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhh--cCceEEEEEH
Confidence 568999999999999999999875422 1234566654
No 216
>PRK09183 transposase/IS protein; Provisional
Probab=96.52 E-value=0.0044 Score=65.43 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..+.|+|++|+|||+||..+.+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999997653
No 217
>PRK06526 transposase; Provisional
Probab=96.51 E-value=0.005 Score=64.54 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.-+.++|++|+|||+||..+.....
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH
Confidence 4589999999999999999987643
No 218
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.49 E-value=0.011 Score=67.82 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=61.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 270 (1087)
+.-+++.++|++|.||||||+-++++. .| .++=|++|+..+...+-..|...+....... .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------A 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------c
Confidence 566899999999999999999999863 23 4678889988888777777766665432110 1
Q ss_pred CCCceEEEEecCCCCCHhhHHHhh
Q 047894 271 DGKRFLLVLDDVWNEDYSLWVDLK 294 (1087)
Q Consensus 271 ~~kr~LlVlDdv~~~~~~~~~~l~ 294 (1087)
.+++.-+|+|.++.......+.+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvil 408 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVIL 408 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHH
Confidence 368889999999877643344433
No 219
>PRK04296 thymidine kinase; Provisional
Probab=96.49 E-value=0.0065 Score=60.95 Aligned_cols=114 Identities=12% Similarity=-0.021 Sum_probs=62.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCC--cccHHHHHHHHHHhhC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASD--LKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 271 (1087)
.++.|+|..|.||||+|..+..+.... -..++.+. + .++.......++.+++..... ....+++...+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k-~-~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFK-P-AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEe-c-cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 578899999999999999988765422 22233331 1 111111122344444322111 2234455555554 33
Q ss_pred CCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCccc
Q 047894 272 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNV 315 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v 315 (1087)
++.-+||+|.+.--+.++..++...+. ..|..|++|.++...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 455699999995443332333333332 357899999987543
No 220
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.46 E-value=0.016 Score=71.41 Aligned_cols=119 Identities=16% Similarity=0.195 Sum_probs=70.1
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++|.+..++.+.+.+..... .......++.++|+.|+|||+||+.++... +...+.+..+...+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhccc--
Confidence 4578988888988888764211 111234578899999999999999998753 22335555544322111
Q ss_pred HHHHHHhhcCCC--CcccHHHHHHHHHHhhCCCc-eEEEEecCCCCCHhhHHHhhcccc
Q 047894 243 KALLESITSAAS--DLKTLNEVQVQLKKAVDGKR-FLLVLDDVWNEDYSLWVDLKAPFL 298 (1087)
Q Consensus 243 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~ 298 (1087)
+...++.... +..... .+.+.++.++ -+++||+++..+...+..+...+.
T Consensus 526 --~~~lig~~~gyvg~~~~~----~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQGG----LLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred --HHHHhcCCCCCcccchhh----HHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 1122222111 111112 2333333344 499999998877777777776554
No 221
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.002 Score=64.94 Aligned_cols=108 Identities=27% Similarity=0.310 Sum_probs=69.5
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCC--cCc-ccccccccCCCCcEEEecCCCC--CcccCcccCCCC
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADI--DIK-SLPESTCKLLNLEILILRNCSR--LIKLPPKMRNLI 648 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~--l~~lp~~i~~L~ 648 (1087)
...+..|..|++.++.++++ ..+..|++|++|+++.| ++. .++....++++|++|++++|.. +.+++. +.++.
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhc
Confidence 34455666666666666555 45667888888888888 444 5666666678888888888762 223332 56677
Q ss_pred CcCEEeecCCccccccCc----cCCCCCCCCccCeeeeCc
Q 047894 649 NLNHLDIRGAKLLKEMPC----GMKELKKLRTLSNFIVGK 684 (1087)
Q Consensus 649 ~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~~ 684 (1087)
+|..|++.+|.... +-. -+.-+++|..|+.+.+..
T Consensus 117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred chhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 78888888876322 211 144567777777665543
No 222
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.39 E-value=0.039 Score=55.30 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=83.8
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAK---ILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
.+++|.++.+.+ |++.|.+++.-+.-.++-|..+|++|.|||.+|+.+.+...+- | +-| . ..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp---~---l~v--k----at~-- 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP---L---LLV--K----ATE-- 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc---e---EEe--c----hHH--
Confidence 468898876544 6777766543222456889999999999999999999975532 1 111 1 111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCH--------hh----HHHhhccccc--CCCCcEEEE
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY--------SL----WVDLKAPFLA--AEPNSKMIV 308 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~~----~~~l~~~l~~--~~~~s~ilv 308 (1087)
-|-+.++. ......+.....-+.-++++++|.++.-.. .+ ..++...+.. .+.|-..|-
T Consensus 187 -liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 -LIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 11111111 111222222233345689999998743210 11 1222222222 234444454
Q ss_pred EcCCcccccc-cCC--CceeeCCCCChHhHHHHHHHhh
Q 047894 309 TTRNSNVAST-MGP--IEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 309 Ttr~~~v~~~-~~~--~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
.|-..+..+. +.. ...++...-+++|-.+++...+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 5544443321 111 1346666667788888887766
No 223
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.37 E-value=0.0031 Score=59.72 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=61.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHH
Q 047894 169 FGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLES 248 (1087)
Q Consensus 169 vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 248 (1087)
||....++++.+.+..-.. ....|.|+|..|+||+++|+.+++........|.. +.. .....+
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~-----~~~----~~~~~~---- 63 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV-----IDC----ASLPAE---- 63 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC-----CCH----HCTCHH----
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE-----ech----hhCcHH----
Confidence 4666666677666654321 12457999999999999999988764422212221 110 000011
Q ss_pred hhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccC-CCCcEEEEEcCCc
Q 047894 249 ITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA-EPNSKMIVTTRNS 313 (1087)
Q Consensus 249 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~~s~ilvTtr~~ 313 (1087)
.+.+ .+.--++|+|+..-+......+...+... ....|+|.||+..
T Consensus 64 ----------------~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 64 ----------------LLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ----------------HHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ----------------HHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1111 14456889999777666666666665532 5678999998853
No 224
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.065 Score=58.54 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=63.6
Q ss_pred CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC-ccccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCC
Q 047894 271 DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN-SNVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRD 348 (1087)
Q Consensus 271 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 348 (1087)
.+++=++|+|+++.-....+..+...+-...+++.+|++|.+ ..+...+ +.-..+.+.+++.++..+.+.... .
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C
Confidence 355668999999888888888888877655566656555544 4444322 222578999999999998887641 1
Q ss_pred CCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 349 LNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 349 ~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
.+ ...++..++|.|..+..+.
T Consensus 206 ---~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 ---AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ---Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899998665543
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.33 E-value=0.0057 Score=66.55 Aligned_cols=102 Identities=22% Similarity=0.192 Sum_probs=54.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
.-+.++|..|+|||+||..+++....++ ..++++++.. +...+...-.. ...+... .+ +.+. +
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~------l~~~l~~~~~~---~~~~~~~---~~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADE------LIEILREIRFN---NDKELEE---VY-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHH------HHHHHHHHHhc---cchhHHH---HH-HHhc-c
Confidence 4589999999999999999998754222 2456665433 23322221111 0111111 12 2222 2
Q ss_pred ceEEEEecCCCCCHhhHHH--hhccccc-CCCCcEEEEEcCC
Q 047894 274 RFLLVLDDVWNEDYSLWVD--LKAPFLA-AEPNSKMIVTTRN 312 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~~s~ilvTtr~ 312 (1087)
-=||||||+.......|.. +...+.. -..+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3589999996654444432 2222211 1235568888863
No 226
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.28 E-value=0.031 Score=53.53 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=72.0
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC---------------------c-----------------
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD---------------------V----------------- 235 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---------------------~----------------- 235 (1087)
..+.++|++|.||||+.+.+|...+.. ...+|+.--+ +
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt----~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPT----RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCC----CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 589999999999999999999875422 2445553211 0
Q ss_pred ----ccHHHHHHHHHHHh---hcC------CCCcccHHHHHHHHHHhhCCCceEEEEecCCC--CCHhhHHHhhcccccC
Q 047894 236 ----FDVLGISKALLESI---TSA------ASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWN--EDYSLWVDLKAPFLAA 300 (1087)
Q Consensus 236 ----~~~~~~~~~i~~~l---~~~------~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~~l~~~l~~~ 300 (1087)
....++-+...+.+ +.. +...+.-++....+.+++-+++-+++-|.--. +....|+-+.-.-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 11122222222222 111 11223334555567888889999999996411 1123455433222225
Q ss_pred CCCcEEEEEcCCcccccccC
Q 047894 301 EPNSKMIVTTRNSNVASTMG 320 (1087)
Q Consensus 301 ~~~s~ilvTtr~~~v~~~~~ 320 (1087)
..|..||++|-+.++...+.
T Consensus 185 r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 185 RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hcCcEEEEEeccHHHHHhcc
Confidence 67999999999987766543
No 227
>PRK04132 replication factor C small subunit; Provisional
Probab=96.27 E-value=0.082 Score=64.42 Aligned_cols=156 Identities=11% Similarity=0.010 Sum_probs=96.1
Q ss_pred cCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEe
Q 047894 201 MGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLD 280 (1087)
Q Consensus 201 ~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 280 (1087)
+.++||||+|..++++.-... .-...+-+++++...... .++++..+...... -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGEN-WRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 678999999999998742111 112456777776544443 33333333211110 01245799999
Q ss_pred cCCCCCHhhHHHhhcccccCCCCcEEEEEcCC-cccccccC-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHH
Q 047894 281 DVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN-SNVASTMG-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESF 358 (1087)
Q Consensus 281 dv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~-~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 358 (1087)
+++.-....+..+...+-.....+++|++|.+ ..+...+. ....+.+.+++.++....+...+-...- ...++.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi----~i~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC----CCCHHH
Confidence 99888777777777776654456666666554 33332222 1257999999999988888766532211 122456
Q ss_pred HHHHHHHhCCchhHHHHH
Q 047894 359 RKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 359 ~~~i~~~c~g~PLai~~~ 376 (1087)
...|++.++|.+..+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 778999999988655443
No 228
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.22 E-value=0.017 Score=59.39 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=36.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
+...++.|+|.+|+|||++|.+++.... . ....++|++... ++...+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~--~-~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA--R-QGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--h-CCCeEEEEECCC-CCHHHHH
Confidence 4558999999999999999999876543 1 346789999875 5554433
No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.21 E-value=0.021 Score=71.25 Aligned_cols=136 Identities=16% Similarity=0.168 Sum_probs=76.8
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++|-+..++.+.+.+..... .......++.++|+.|+|||+||+.+.+..-. .-...+-+..+...+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~---~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG---SEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC---CccceEEEEchhccccccH-
Confidence 5688999999999888763221 11123456778999999999999999875311 1122333444432222111
Q ss_pred HHHHHHhhcCCC--CcccHHHHHHHHHHhhCCCc-eEEEEecCCCCCHhhHHHhhcccccC-----------CCCcEEEE
Q 047894 243 KALLESITSAAS--DLKTLNEVQVQLKKAVDGKR-FLLVLDDVWNEDYSLWVDLKAPFLAA-----------EPNSKMIV 308 (1087)
Q Consensus 243 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~ilv 308 (1087)
...++.+.. +..... .+.+.++.++ -+++||++...+...+..+...+-.+ ...+-||+
T Consensus 585 ---~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred ---HHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 111222111 111112 2334444455 48999999887777777777665432 13455666
Q ss_pred EcCC
Q 047894 309 TTRN 312 (1087)
Q Consensus 309 Ttr~ 312 (1087)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 6653
No 230
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.21 E-value=0.0015 Score=78.19 Aligned_cols=106 Identities=25% Similarity=0.262 Sum_probs=74.6
Q ss_pred ccCCCCcccEEEecCCCC--cccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccC--cccCCCC
Q 047894 573 LLPKFKRLRMLSLQGYCI--GELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLP--PKMRNLI 648 (1087)
Q Consensus 573 ~~~~~~~Lr~L~l~~~~i--~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~ 648 (1087)
.-..++.|+.|.+++-.+ .++-.-+.++++|+.||+|+|.|+.+ .+|++|+|||+|-+++=. ...-+ .++.+|+
T Consensus 143 ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLK 220 (699)
T ss_pred HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhccc
Confidence 345678899999988654 33334467889999999999999998 789999999999988632 22222 2477899
Q ss_pred CcCEEeecCCcccccc--Cc----cCCCCCCCCccCee
Q 047894 649 NLNHLDIRGAKLLKEM--PC----GMKELKKLRTLSNF 680 (1087)
Q Consensus 649 ~L~~L~l~~~~~~~~~--p~----~i~~L~~L~~L~~~ 680 (1087)
+|++||+|........ .. --..|+.|+.|+..
T Consensus 221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred CCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 9999999976532111 10 11236677777644
No 231
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.21 E-value=0.0004 Score=78.77 Aligned_cols=100 Identities=22% Similarity=0.221 Sum_probs=81.6
Q ss_pred CcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCC-CCCcCEEeec
Q 047894 578 KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRN-LINLNHLDIR 656 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~-L~~L~~L~l~ 656 (1087)
..|.+.+.++|.+..+-+++.-+++|+.|||++|++++.- .+..|++|++|||++|. +..+|. ++. -.+|+.|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~-l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQ-LSMVGCKLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccc-cchhhhhheeeeec
Confidence 4677788888888877788888999999999999998775 78999999999999976 777876 332 2249999999
Q ss_pred CCccccccCccCCCCCCCCccCeeee
Q 047894 657 GAKLLKEMPCGMKELKKLRTLSNFIV 682 (1087)
Q Consensus 657 ~~~~~~~~p~~i~~L~~L~~L~~~~~ 682 (1087)
+|. +..+ .|+.+|++|+.|+...+
T Consensus 241 nN~-l~tL-~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 241 NNA-LTTL-RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred ccH-HHhh-hhHHhhhhhhccchhHh
Confidence 997 6554 57999999999986544
No 232
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.021 Score=65.04 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=109.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
+++||-+.-...|...+....- ...-...|+-|+||||+|+-++....-.. | .....+..=...++|
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~-------~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCEN-------G-PTAEPCGKCISCKEI 82 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCC-------C-CCCCcchhhhhhHhh
Confidence 4579999999999999976532 23446789999999999998876432110 0 000011111111222
Q ss_pred HHHhhc-----CCCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcC-Cccc
Q 047894 246 LESITS-----AASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTR-NSNV 315 (1087)
Q Consensus 246 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr-~~~v 315 (1087)
...-.. ........++....+.+. .++|.=+.|+|.|.-.....|..+...+-.....-..|+.|+ ...+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 111000 000011223322222221 134555899999976667788888777754444555555555 4444
Q ss_pred ccc-cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 316 AST-MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 316 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
... ......|.++.++.++-...+...+-..... ...+....|++..+|...-...
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~----~e~~aL~~ia~~a~Gs~RDals 219 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN----IEEDALSLIARAAEGSLRDALS 219 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCc----cCHHHHHHHHHHcCCChhhHHH
Confidence 432 2333679999999999888888776433322 2344556688888886654333
No 233
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.19 E-value=0.023 Score=59.70 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=36.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEEEeCCcccHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWVCVSDVFDVLGI 241 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~ 241 (1087)
+...++.|+|.+|+|||++|.+++....... +....++|++....++...+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 4457999999999999999999974422111 01367899998887665443
No 234
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.14 E-value=0.0036 Score=57.76 Aligned_cols=23 Identities=48% Similarity=0.577 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998853
No 235
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.094 Score=62.01 Aligned_cols=183 Identities=15% Similarity=0.157 Sum_probs=99.8
Q ss_pred CccccchhhHHHH---HHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKI---LDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l---~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
.++.|-++.+++| ++.|.++.. -+..-++=|.++|++|+|||-||++++-...+ =|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV--------PF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------PFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC--------ceeeechH----
Confidence 4678887665555 445544321 11244567899999999999999999986442 23444432
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC---------------HhhHHHhhcccccCCCCc
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED---------------YSLWVDLKAPFLAAEPNS 304 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~~s 304 (1087)
+.++.+.... +.. ........-...+.+|.+|+++... .....++...+.......
T Consensus 379 ----EFvE~~~g~~--asr---vr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ----EFVEMFVGVG--ASR---VRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHHhcccc--hHH---HHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 2222222110 111 1112222334567888888873211 122333333333333333
Q ss_pred -EE-EEEcCCcccccc--cC---CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHH
Q 047894 305 -KM-IVTTRNSNVAST--MG---PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAA 373 (1087)
Q Consensus 305 -~i-lvTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 373 (1087)
.| +-+|...++.+. +. -++.+.++.-+.....++|..++-..... .+..++++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHH
Confidence 23 334444444331 12 23678888888888999999887443322 23344555 888888877654
No 236
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.028 Score=62.44 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=80.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc------------------CCCeEE
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDS------------------KFDVKA 228 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~------------------~f~~~~ 228 (1087)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+..--... ...-+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677778888888887443 12235899999999999999998875421110 112233
Q ss_pred EEEeCCccc---HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcE
Q 047894 229 WVCVSDVFD---VLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSK 305 (1087)
Q Consensus 229 wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 305 (1087)
.+..++... ..+..+++.+...... ..++.-++++|+++.-....-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444333332 1222222222221110 035677999999977665555666665555566778
Q ss_pred EEEEcCC-cccccccCC-CceeeCCC
Q 047894 306 MIVTTRN-SNVASTMGP-IEHYNLKS 329 (1087)
Q Consensus 306 ilvTtr~-~~v~~~~~~-~~~~~l~~ 329 (1087)
+|++|.. ..+...+.. ...+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 8887773 233222211 13466665
No 237
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.13 E-value=0.023 Score=59.09 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=34.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLG 240 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 240 (1087)
+...++.|+|.+|+|||++|.+++..... .-..++|++.. .++...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~---~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAK---NGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEECC-CCCHHH
Confidence 34579999999999999999999875432 33567899887 444443
No 238
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.13 E-value=0.0033 Score=63.04 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=63.7
Q ss_pred CCCcccEEEecCCCCcc-----cCccccCCccceeeccCCCcCc----ccc-------cccccCCCCcEEEecCCCCCcc
Q 047894 576 KFKRLRMLSLQGYCIGE-----LPIPFEELRLLRFLNLADIDIK----SLP-------ESTCKLLNLEILILRNCSRLIK 639 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~l~~ 639 (1087)
....+..+||+||.|.+ +...|.+-++|+..+++.-... ++| +.+-+|++||+.+|++|-.-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 36788899999998843 4456778889999998864321 334 3456899999999999876555
Q ss_pred cCcc----cCCCCCcCEEeecCCc
Q 047894 640 LPPK----MRNLINLNHLDIRGAK 659 (1087)
Q Consensus 640 lp~~----i~~L~~L~~L~l~~~~ 659 (1087)
.|.. |+.-+.|.||.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 5543 6677899999999987
No 239
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.047 Score=59.60 Aligned_cols=71 Identities=10% Similarity=0.143 Sum_probs=44.2
Q ss_pred CCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc-cccccC-CCceeeCCCCChHhHHHHHHHh
Q 047894 272 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN-VASTMG-PIEHYNLKSLSDDDCWSIFIKH 342 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~-v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 342 (1087)
+++-++|+|++..-+...-..+...+.....++.+|++|.+.. +...+. .-..+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4444566788877666555555555543334566777776543 332221 1257889999999998888653
No 240
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.11 E-value=0.013 Score=57.14 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=65.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHH
Q 047894 168 VFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLE 247 (1087)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 247 (1087)
++|....+.++.+.+...... . .-|.|+|..|+||+.+|+.+++...... ..-+-|+++.. +.+.+-..+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~---~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~---~pfi~vnc~~~-~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS---D-LPVLITGETGTGKELLARAIHNNSPRKN---GPFISVNCAAL-PEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS---T-S-EEEECSTTSSHHHHHHHHHHCSTTTT---S-EEEEETTTS--HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhCC---C-CCEEEEcCCCCcHHHHHHHHHHhhhccc---CCeEEEehhhh-hcchhhhhhhc
Confidence 467788888888877654432 1 3567999999999999999998643222 22244444433 22222222221
Q ss_pred HhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhccccc------CC-----CCcEEEEEcCC
Q 047894 248 SITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLA------AE-----PNSKMIVTTRN 312 (1087)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~------~~-----~~s~ilvTtr~ 312 (1087)
.......+.... ....+... ..=-|+||++..-.......+...+.. +. ...|||.||..
T Consensus 73 ~~~~~~~~~~~~--~~G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 73 HEKGAFTGARSD--KKGLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BCSSSSTTTSSE--BEHHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccc--cCCceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 111100011000 00122222 233688999977655444444443321 11 25688888874
No 241
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.09 E-value=0.042 Score=58.91 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=47.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLESITSAASDLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 270 (1087)
..+++.++|++|+||||++..++.....+.+. ..+..|+..... ...+-+....+.++.+.....+..++...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 45799999999999999999988765432101 244556554321 112222222333332222233444454444433
Q ss_pred CCCceEEEEecC
Q 047894 271 DGKRFLLVLDDV 282 (1087)
Q Consensus 271 ~~kr~LlVlDdv 282 (1087)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 457888864
No 242
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.08 E-value=0.067 Score=61.58 Aligned_cols=181 Identities=14% Similarity=0.079 Sum_probs=88.6
Q ss_pred CccccchhhHHHHHHHHhc---C-CCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHH
Q 047894 166 PEVFGREEDKAKILDMVLA---D-TPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGI 241 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~---~-~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 241 (1087)
..+.|.+..++.+.+.... . ...+...++-|.++|++|+|||.+|+.+++.... .| +-+..+. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~---~~---~~l~~~~------l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL---PL---LRLDVGK------L 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---CE---EEEEhHH------h
Confidence 3567777666665543211 0 0111134567899999999999999999886432 11 1122111 1
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC--------HhhHHHhh----cccccCCCCcEEEEE
Q 047894 242 SKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED--------YSLWVDLK----APFLAAEPNSKMIVT 309 (1087)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~----~~l~~~~~~s~ilvT 309 (1087)
.. . . .......+...+...-...+.+|++|+++..- ...-..+. ..+.....+--||.|
T Consensus 296 ~~----~----~-vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 FG----G----I-VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred cc----c----c-cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 10 0 0 00111122222332334578999999985310 00011111 111122233345556
Q ss_pred cCCcc-ccccc----CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 310 TRNSN-VASTM----GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 310 tr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
|.... +...+ .-...+.++.-+.++-.++|..+.......... ......+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~---~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK---KYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc---ccCHHHHHhhcCCCC
Confidence 65433 22111 223567888888898888988776432211100 111245666666643
No 243
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.08 E-value=0.0016 Score=61.83 Aligned_cols=87 Identities=22% Similarity=0.155 Sum_probs=46.9
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCce
Q 047894 196 IPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRF 275 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 275 (1087)
|.++|++|+|||+||+.+++... ....-+.++...+..++....--. ...... ....+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~-~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPS--NGQFEF-KDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET---TTTTCE-EE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeec--cccccc-ccccccccc-----ccee
Confidence 67999999999999999988642 123456677766665544322111 000000 000000001 1789
Q ss_pred EEEEecCCCCCHhhHHHhhcc
Q 047894 276 LLVLDDVWNEDYSLWVDLKAP 296 (1087)
Q Consensus 276 LlVlDdv~~~~~~~~~~l~~~ 296 (1087)
++|||++.......+..+...
T Consensus 68 il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHH
T ss_pred EEEECCcccCCHHHHHHHHHH
Confidence 999999976554444444443
No 244
>PRK06696 uridine kinase; Validated
Probab=96.07 E-value=0.0078 Score=62.36 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=36.9
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 170 GREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 170 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.|++-+++|.+.+..... +...+|+|.|.+|+||||+|+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 366778888888875433 4568999999999999999999987653
No 245
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.047 Score=56.58 Aligned_cols=79 Identities=15% Similarity=0.316 Sum_probs=46.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccc-cCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRD-SKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDG 272 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (1087)
++|.++|++|.|||+|++..+....++- ..+....-+.++.. .++.+....- ..-...+..++.+.+++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsES------gKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSES------GKLVAKMFQKIQELVED 247 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhhh------hhHHHHHHHHHHHHHhC
Confidence 7899999999999999999999875542 13333334443322 2222221111 12233445556666655
Q ss_pred Cc--eEEEEecC
Q 047894 273 KR--FLLVLDDV 282 (1087)
Q Consensus 273 kr--~LlVlDdv 282 (1087)
+. +.+.+|.|
T Consensus 248 ~~~lVfvLIDEV 259 (423)
T KOG0744|consen 248 RGNLVFVLIDEV 259 (423)
T ss_pred CCcEEEEEeHHH
Confidence 44 45667888
No 246
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.07 E-value=0.037 Score=57.97 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=53.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC----------------
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS---------------- 254 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------------- 254 (1087)
+...++.|+|.+|+|||++|.++...... .=..++|++.... ..++.+.+ ++++-...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 45578999999999999999998654321 2346789988755 33444433 22221100
Q ss_pred ----CcccHHHHHHHHHHhhCC-CceEEEEecCC
Q 047894 255 ----DLKTLNEVQVQLKKAVDG-KRFLLVLDDVW 283 (1087)
Q Consensus 255 ----~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 283 (1087)
.....+.+...+.+.+.. +.-++|+|.+-
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 012234555666666653 55689999974
No 247
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.06 E-value=0.029 Score=56.32 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=49.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhhcCCC---CcccHHH-HHHHHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALLESITSAAS---DLKTLNE-VQVQLK 267 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l~ 267 (1087)
++|+.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+.. ...+..+ ....+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3799999999999999988887765432 245667776533 2334445566666664321 1122222 233343
Q ss_pred HhhCCCceEEEEecCC
Q 047894 268 KAVDGKRFLLVLDDVW 283 (1087)
Q Consensus 268 ~~l~~kr~LlVlDdv~ 283 (1087)
+.-.++.=+|++|=..
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 3323334577777663
No 248
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.04 E-value=0.00051 Score=81.49 Aligned_cols=161 Identities=24% Similarity=0.389 Sum_probs=72.5
Q ss_pred CCcccEEEEecCCCcccc----CCCCCCCccEEEEeecCCcccc-----CCCCCcccEEEeccCCCcCCccEEEeccCCC
Q 047894 867 FPRLHKLSIVECPKLSGE----LPELLPSLETLVVSKCGKLVVP-----LSCYPMLCRLEVDECKELANLRSLLICNSTA 937 (1087)
Q Consensus 867 ~~~L~~L~l~~c~~l~~~----~p~~l~~L~~L~l~~~~~~~~~-----~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~ 937 (1087)
+|+|+.|.+..|+.+++. +...+++|++|++++|..+... ...+++++.+.+..+..+..++.+.+..+..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~ 347 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT 347 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence 455666665555544321 1234555666666665443210 1112333333333333333444444444332
Q ss_pred CC--CCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCcc-ccccccCCCCCCCCCCCCCCCCccEEE
Q 047894 938 LK--SLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQ-RLFDDEGDASSSSPSSSSSPVMLQLLR 1014 (1087)
Q Consensus 938 ~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~-~l~l~~n~~~~~~~~~~~~l~~L~~L~ 1014 (1087)
.. .........++.|+.+.+..|. ..... ..+.+.+|+.|+ .+... .....+++.|+
T Consensus 348 ~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~--------~~~~l~gc~~l~~~l~~~-----------~~~~~~l~~L~ 407 (482)
T KOG1947|consen 348 LTSDDLAELILRSCPKLTDLSLSYCG-ISDLG--------LELSLRGCPNLTESLELR-----------LCRSDSLRVLN 407 (482)
T ss_pred cCchhHhHHHHhcCCCcchhhhhhhh-ccCcc--------hHHHhcCCcccchHHHHH-----------hccCCccceEe
Confidence 21 1222223455555555555554 22111 023566777772 22211 11222377888
Q ss_pred EeccCCCcccC-CCCCC-CCCccEEEEecCCCCcc
Q 047894 1015 IENCRKLESIP-DGLPN-LKCLQSICIRKCPSLVS 1047 (1087)
Q Consensus 1015 l~~~~~~~~~p-~~l~~-l~~L~~L~l~~c~~l~~ 1047 (1087)
++.|.....-- ..... +..+..+++.+|+.+..
T Consensus 408 l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 408 LSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 88876643221 11111 56667777777776653
No 249
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.02 E-value=0.029 Score=65.90 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|.+..++.+...+.... ..-|.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999988765432 245789999999999999999764
No 250
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.99 E-value=0.026 Score=68.49 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=68.2
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++|-++.++.+.+.+..... ........+.++|++|+|||++|+.++.... . . .+.+.++...+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~-~---~i~id~se~~~~~--- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I-E---LLRFDMSEYMERH--- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C-C---cEEeechhhcccc---
Confidence 3578999999999888863211 0112345789999999999999999987642 1 2 2344444332211
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhhCCC-ceEEEEecCCCCCHhhHHHhhcccc
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAVDGK-RFLLVLDDVWNEDYSLWVDLKAPFL 298 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~ 298 (1087)
.+..-++.+.. ....+ ....+.+.+..+ .-+|+||++.......+..+...+.
T Consensus 529 -~~~~LiG~~~g-yvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 -TVSRLIGAPPG-YVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred -cHHHHcCCCCC-ccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11122222111 00000 011222333333 4599999998877777777766553
No 251
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.98 E-value=0.033 Score=57.68 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD 237 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 237 (1087)
+...++.|.|.+|+||||+|.+++..... .-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~---~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAG---QGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCCCCH
Confidence 44589999999999999999998865432 224567887655543
No 252
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.97 E-value=0.0085 Score=57.76 Aligned_cols=99 Identities=24% Similarity=0.254 Sum_probs=66.8
Q ss_pred CcccEEEecCCCCcccCccccCCccceeeccCCCcCccccccccc-CCCCcEEEecCCCCCcccCc--ccCCCCCcCEEe
Q 047894 578 KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCK-LLNLEILILRNCSRLIKLPP--KMRNLINLNHLD 654 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 654 (1087)
...-.+||++|.+..+ ..|..+..|.+|.+.+|+|+.+-..+.. +++|++|.|.+|+ +.++-+ .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 4566788888887766 4577788888888888888877555544 5678888888865 444322 256677888888
Q ss_pred ecCCccccccCc----cCCCCCCCCccCe
Q 047894 655 IRGAKLLKEMPC----GMKELKKLRTLSN 679 (1087)
Q Consensus 655 l~~~~~~~~~p~----~i~~L~~L~~L~~ 679 (1087)
+-+|.. ...+. -+.++++|++|+.
T Consensus 120 ll~Npv-~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 120 LLGNPV-EHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred ecCCch-hcccCceeEEEEecCcceEeeh
Confidence 888762 22211 1556666776654
No 253
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.97 E-value=0.044 Score=52.17 Aligned_cols=103 Identities=19% Similarity=0.161 Sum_probs=57.0
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
.+++|+|..|.|||||++.+..-... ....+|+.... .+.-. ...+.-+...-.+...+-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP----DEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC----CceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 58999999999999999999876432 23334432100 00000 00122223333456667778
Q ss_pred ceEEEEecCCCC-CHhhHHHhhcccccCCCCcEEEEEcCCcccc
Q 047894 274 RFLLVLDDVWNE-DYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA 316 (1087)
Q Consensus 274 r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~ 316 (1087)
+-++++|+.-.. +......+...+... +..||++|.+.+..
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 889999987432 223333333333322 34677777765443
No 254
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.09 Score=57.46 Aligned_cols=91 Identities=12% Similarity=0.136 Sum_probs=49.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLESITSAASDLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 270 (1087)
..++|+++|++|+||||++..++.....+ .+ .+..+...... ...+-++...+.++.+.....+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc--CC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 45799999999999999999998754322 22 34455543321 1111222333333322222334555555554433
Q ss_pred CC-CceEEEEecCCCC
Q 047894 271 DG-KRFLLVLDDVWNE 285 (1087)
Q Consensus 271 ~~-kr~LlVlDdv~~~ 285 (1087)
.. +.=+|++|-....
T Consensus 317 ~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 317 EEARVDYILIDTAGKN 332 (436)
T ss_pred hccCCCEEEEeCcccc
Confidence 22 3457888877443
No 255
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.95 E-value=0.04 Score=57.40 Aligned_cols=92 Identities=16% Similarity=0.120 Sum_probs=54.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEEEeCCcccHHHHHHHHHHHhhcCC---------CCccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWVCVSDVFDVLGISKALLESITSAA---------SDLKT 258 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~ 258 (1087)
+...++.|+|.+|+|||++|.+++......+ +.-..++|+.....++...+. ++.+...... ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 4457999999999999999999876532110 011567899887776654433 3333322110 01234
Q ss_pred HHHHHHHHHHhhC----CCceEEEEecCC
Q 047894 259 LNEVQVQLKKAVD----GKRFLLVLDDVW 283 (1087)
Q Consensus 259 ~~~~~~~l~~~l~----~kr~LlVlDdv~ 283 (1087)
.+++...+.+..+ .+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4555554444432 344589999974
No 256
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.91 E-value=0.044 Score=54.51 Aligned_cols=117 Identities=17% Similarity=0.107 Sum_probs=60.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhc--C-------------CCCccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITS--A-------------ASDLKT 258 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~-------------~~~~~~ 258 (1087)
.+++|+|..|.|||||++.+..-... -...+++.-. +........-..+.- + ....+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 58999999999999999999875432 1223333211 111111111111110 0 001111
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhcccccCCCCcEEEEEcCCccccc
Q 047894 259 LNEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLAAEPNSKMIVTTRNSNVAS 317 (1087)
Q Consensus 259 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~ 317 (1087)
-+...-.+...+-.++-++++|+.... +......+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 222333466667778889999987443 22222333333322223677888887765543
No 257
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.89 E-value=0.09 Score=65.08 Aligned_cols=181 Identities=16% Similarity=0.124 Sum_probs=92.1
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..+.|.++.++++.+++...-. -+....+-+.++|++|+|||++|+.+++... ..| +.++.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~---~~~---i~i~~~~---- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG---AYF---ISINGPE---- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC---CeE---EEEecHH----
Confidence 3478999999998887642100 0112345688999999999999999988642 122 2222111
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC-----------HhhHHHhhcccccC-CCCcEE
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED-----------YSLWVDLKAPFLAA-EPNSKM 306 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~~s~i 306 (1087)
+.. .. .......+...+.......+.+|++|++.... ......+...+... ..+..+
T Consensus 248 --i~~----~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 248 --IMS----KY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred --Hhc----cc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 100 00 00111223333444445667899999984321 01112222222211 223344
Q ss_pred EE-EcCCc-ccccccC----CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhH
Q 047894 307 IV-TTRNS-NVASTMG----PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALA 372 (1087)
Q Consensus 307 lv-Ttr~~-~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 372 (1087)
+| ||... .+...+. -...+.+...+.++-.+++....-+. ....+ .....+++.+.|.--+
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d----~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAED----VDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCccc----cCHHHHHHhCCCCCHH
Confidence 44 44332 2221111 12457778788888888887544221 11111 1235688888886543
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.89 E-value=0.03 Score=54.82 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=29.8
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD 237 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 237 (1087)
++.|+|.+|+||||++..+...... .-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcchH
Confidence 3689999999999999999876532 234677887765543
No 259
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.89 E-value=0.026 Score=60.81 Aligned_cols=84 Identities=24% Similarity=0.215 Sum_probs=54.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCC-----CCcccHHHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAA-----SDLKTLNEVQVQ 265 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~ 265 (1087)
+..+++-|+|++|+||||||.+++..... .-..++||+....++.. .++.++... ....+.++....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEI 124 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHH
Confidence 45589999999999999999998765432 23467899887766643 233333211 123345555555
Q ss_pred HHHhhC-CCceEEEEecC
Q 047894 266 LKKAVD-GKRFLLVLDDV 282 (1087)
Q Consensus 266 l~~~l~-~kr~LlVlDdv 282 (1087)
+...++ +..-+||+|-|
T Consensus 125 ~~~li~s~~~~lIVIDSv 142 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHHhccCCCEEEEcch
Confidence 555443 45669999987
No 260
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.89 E-value=0.12 Score=64.13 Aligned_cols=179 Identities=17% Similarity=0.152 Sum_probs=92.6
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..+.|.+..++++.+.+.-.-. -+....+-+.++|++|+|||++|+.+++... ..| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~---~~f-----i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG---ANF-----IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC---CCE-----EEEehH---
Confidence 3577888888877776542100 0012345578999999999999999998643 122 222211
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC--------CH----hhHHHhhccccc--CCCCc
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE--------DY----SLWVDLKAPFLA--AEPNS 304 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~----~~~~~l~~~l~~--~~~~s 304 (1087)
++ +... .......+...+...-...+.+|++|+++.- .. .....+...+.. ...+.
T Consensus 522 -~l----~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -EI----LSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -HH----hhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 1110 0111122233333344567799999998431 00 011222222221 12344
Q ss_pred EEEEEcCCccccc-cc----CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 305 KMIVTTRNSNVAS-TM----GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 305 ~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
-||.||......+ .+ .-...+.++..+.++-.++|..+..+. ....... ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 5555665443322 11 123568888888888888887654222 1111112 245777777744
No 261
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.02 Score=60.11 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=48.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
.-+.++|.+|+|||.||.++.+... + .--.+.++++. ++..++...... ..... ++.+.+ .+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~~~------el~~~Lk~~~~~----~~~~~----~l~~~l-~~ 167 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFITAP------DLLSKLKAAFDE----GRLEE----KLLREL-KK 167 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEEHH------HHHHHHHHHHhc----CchHH----HHHHHh-hc
Confidence 3589999999999999999999866 3 22345666543 344444444332 11111 222211 23
Q ss_pred ceEEEEecCCCCCHhhHH
Q 047894 274 RFLLVLDDVWNEDYSLWV 291 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~ 291 (1087)
-=||||||+.......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 349999999776555554
No 262
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.87 E-value=0.047 Score=54.41 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=63.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEE---eCCcccHHHHH------HHHHHHhhcCC------CCccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVC---VSDVFDVLGIS------KALLESITSAA------SDLKT 258 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~------~~i~~~l~~~~------~~~~~ 258 (1087)
.+++|+|..|.|||||++.++.... .....+++. +.. .+..... .++++.++... ...+.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 5899999999999999999987543 223334432 111 1111111 11333332211 11222
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhcccccC-CC-CcEEEEEcCCcccc
Q 047894 259 LNEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLAA-EP-NSKMIVTTRNSNVA 316 (1087)
Q Consensus 259 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-~s~ilvTtr~~~v~ 316 (1087)
-+...-.+...+-..+-++++|+.-.. +......+...+... .. +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 233334566777788899999987432 223333333333321 22 67788888765543
No 263
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.029 Score=66.73 Aligned_cols=159 Identities=17% Similarity=0.170 Sum_probs=84.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++||++|++++++.|.....+. -.++|.+|||||++|.-++....... ... +..-....+ -++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN------PvLiGEpGVGKTAIvEGLA~rIv~g~-VP~---~L~~~~i~s-----LD~ 234 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN------PVLVGEPGVGKTAIVEGLAQRIVNGD-VPE---SLKDKRIYS-----LDL 234 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC------CeEecCCCCCHHHHHHHHHHHHhcCC-CCH---HHcCCEEEE-----ecH
Confidence 458999999999999998766542 25789999999999887766432111 110 000000000 011
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhh-CCCceEEEEecCCCC---------CHhhHHHhhcccccCCCC-cEEEEEcCCcc
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAV-DGKRFLLVLDDVWNE---------DYSLWVDLKAPFLAAEPN-SKMIVTTRNSN 314 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~~-s~ilvTtr~~~ 314 (1087)
..-+.. ..--.+.++....+-+.+ +.++.++++|.+..- ..+.-.-+..++. .| -++|-.|.-.+
T Consensus 235 g~LvAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA---RGeL~~IGATT~~E 310 (786)
T COG0542 235 GSLVAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA---RGELRCIGATTLDE 310 (786)
T ss_pred HHHhcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh---cCCeEEEEeccHHH
Confidence 111111 111234555444444444 345899999997331 0111112222222 23 24454444332
Q ss_pred cccc-------cCCCceeeCCCCChHhHHHHHHHhh
Q 047894 315 VAST-------MGPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 315 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
.... ....+.+.+...+.+++..++....
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 2211 1233678889999999988887643
No 264
>PHA02244 ATPase-like protein
Probab=95.86 E-value=0.065 Score=58.16 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
-|.|+|++|+|||++|+.+++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999876
No 265
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.05 Score=53.67 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=59.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----C-------cccHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----D-------LKTLNE 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~-------~~~~~~ 261 (1087)
.+++|+|..|.|||||.+.++.-.. .....+++.-....... .......+.--.. . .+.-+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLD--LESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcC--HHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 5899999999999999999987543 22233333211100000 0000111110000 0 111122
Q ss_pred HHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhcccccCCCCcEEEEEcCCccccc
Q 047894 262 VQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLAAEPNSKMIVTTRNSNVAS 317 (1087)
Q Consensus 262 ~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~ 317 (1087)
..-.+...+-.++-++++|+-... +......+...+.....+..||++|.+.....
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 223456667778889999987432 22223333333322223567888887765543
No 266
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.84 E-value=0.077 Score=53.90 Aligned_cols=207 Identities=13% Similarity=0.192 Sum_probs=112.2
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc---cccccCCCeEEEEEeCCc-cc------
Q 047894 168 VFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK---AVRDSKFDVKAWVCVSDV-FD------ 237 (1087)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~---~~~~~~f~~~~wv~~s~~-~~------ 237 (1087)
+.++++....+...... +...-..++|++|.||-|.+..+.+.. .+.+-.-+.+.|.+-+.. ..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56677777776665542 334578899999999999887665542 111113345566654433 00
Q ss_pred --------------HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCce-EEEEecCCCCCHhhHHHhhcccccCCC
Q 047894 238 --------------VLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRF-LLVLDDVWNEDYSLWVDLKAPFLAAEP 302 (1087)
Q Consensus 238 --------------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~ 302 (1087)
-.-+.++++.++....+ + +.-..+.| ++|+-.+++-..++..++.+....-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q-----------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------I-ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------h-hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 11122222222221110 0 00112344 666666655555556666665544455
Q ss_pred CcEEEEEcCCc-ccccccCC-CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhh
Q 047894 303 NSKMIVTTRNS-NVASTMGP-IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLL 380 (1087)
Q Consensus 303 ~s~ilvTtr~~-~v~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 380 (1087)
.+|+|+..-+- .+-..... --.++++..+++|....+.+.+-..+-. ...+++.+|+++++|.---...+...+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~----lp~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ----LPKELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc----CcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 67777644321 11111111 1357899999999999998877443322 225688999999998654333222222
Q ss_pred cCC-----------CHHHHHHHHhhhc
Q 047894 381 RTT-----------RHDAWDDILESKI 396 (1087)
Q Consensus 381 ~~~-----------~~~~w~~~~~~~~ 396 (1087)
+-+ ...+|+-...+..
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHH
Confidence 111 3467887766533
No 267
>PRK13695 putative NTPase; Provisional
Probab=95.84 E-value=0.013 Score=58.02 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEecCCChHHHHHHHHhcccc
Q 047894 196 IPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
++|+|.+|+|||||++.+++...
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999887643
No 268
>PRK09354 recA recombinase A; Provisional
Probab=95.82 E-value=0.033 Score=60.47 Aligned_cols=85 Identities=22% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCC-----CCcccHHHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAA-----SDLKTLNEVQVQ 265 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~ 265 (1087)
+.-+++-|+|++|+||||||.+++..... .-..++||.....++.. .++.++... ......++....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 45589999999999999999998765432 33567899888776653 334443221 123345555555
Q ss_pred HHHhhC-CCceEEEEecCC
Q 047894 266 LKKAVD-GKRFLLVLDDVW 283 (1087)
Q Consensus 266 l~~~l~-~kr~LlVlDdv~ 283 (1087)
+...++ +..-+||+|-|-
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 555443 456699999983
No 269
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.77 E-value=0.16 Score=62.51 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=72.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++.....+ ...+.+++.... ...+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~---~~~v~i~c~~~~--~~~~~~- 445 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGRNN---RRMVKMNCAAMP--AGLLES- 445 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCCCC---CCeEEEecccCC--hhHhhh-
Confidence 3689999888888776654332 124689999999999999999987643222 123444444321 111111
Q ss_pred HHHhhcCCCCc-cc-HHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccC-----------CCCcEEEEEcCC
Q 047894 246 LESITSAASDL-KT-LNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA-----------EPNSKMIVTTRN 312 (1087)
Q Consensus 246 ~~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~ilvTtr~ 312 (1087)
.+....... .. .......+. ....=.|+||++..-.......+...+..+ ..+.|||.||..
T Consensus 446 --~lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 446 --DLFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred --hhcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 111111100 00 001111121 122346999999877666666665544321 134588888865
Q ss_pred c
Q 047894 313 S 313 (1087)
Q Consensus 313 ~ 313 (1087)
.
T Consensus 521 ~ 521 (686)
T PRK15429 521 D 521 (686)
T ss_pred C
Confidence 3
No 270
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.76 E-value=0.017 Score=57.48 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=27.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEE
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWV 230 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv 230 (1087)
...+|.+.|++|+||||+|+.++..... .+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~---~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL---KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEE
Confidence 3468999999999999999999886542 34444444
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.72 E-value=0.0075 Score=68.55 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=41.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
+++|.++.+++|++.|..........-+++.++|++|+||||||+.+.+-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 5899999999999999433221114457999999999999999999988543
No 272
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.69 E-value=0.0043 Score=36.96 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=9.0
Q ss_pred ceeeccCCCcCcccccccc
Q 047894 603 LRFLNLADIDIKSLPESTC 621 (1087)
Q Consensus 603 L~~L~L~~~~i~~lp~~i~ 621 (1087)
|++|++++|.++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4445555554444444433
No 273
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.68 E-value=0.019 Score=57.84 Aligned_cols=105 Identities=17% Similarity=0.125 Sum_probs=52.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh-h--
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKA-V-- 270 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l-- 270 (1087)
+++.|.|.+|+||||+++.+.......+ ..+.+......-... +.+..+. ....+.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g----~~v~~~apT~~Aa~~----L~~~~~~---~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG----KRVIGLAPTNKAAKE----LREKTGI---EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC----CeEEEECCcHHHHHH----HHHhhCc---chhhHHHHHhcCCcccccc
Confidence 5788999999999999999877654321 233333332222222 2222221 111111110000000 0
Q ss_pred ---CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcC
Q 047894 271 ---DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTR 311 (1087)
Q Consensus 271 ---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr 311 (1087)
..++-+||+|++.-.+...+..+...... .|+++|+.=-
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 13346999999976665666666555443 4778876543
No 274
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.68 E-value=0.039 Score=59.43 Aligned_cols=85 Identities=22% Similarity=0.205 Sum_probs=54.8
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCC-----CCcccHHHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAA-----SDLKTLNEVQVQ 265 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~ 265 (1087)
+..+++-|+|++|+||||||.+++..... .-..++||.....++.. .++.++... ......++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 45589999999999999999998765432 23456788877665543 233333221 123345555555
Q ss_pred HHHhhC-CCceEEEEecCC
Q 047894 266 LKKAVD-GKRFLLVLDDVW 283 (1087)
Q Consensus 266 l~~~l~-~kr~LlVlDdv~ 283 (1087)
+...++ +..-+||+|.+-
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 555443 456799999983
No 275
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.68 E-value=0.025 Score=59.57 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=39.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccccc---ccCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVR---DSKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
..+.=|+|.+|+|||.|+.+++-..... ++.-..++|++-...++...+. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 3688899999999999998876432211 1123468999999988887754 566554
No 276
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.66 E-value=0.025 Score=53.92 Aligned_cols=117 Identities=18% Similarity=0.089 Sum_probs=59.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEE---eCCcccHHHHHHHHHHHhh-----cCCC-CcccHH----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVC---VSDVFDVLGISKALLESIT-----SAAS-DLKTLN---- 260 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~~~l~-----~~~~-~~~~~~---- 260 (1087)
..|-|++..|.||||+|....-..... .+ .+.+|. .........+++.+ ..+. .... ...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH--GY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 367888999999999998876654322 22 233332 22223333333333 0010 0000 001111
Q ss_pred ---HHHHHHHHhhCC-CceEEEEecCCCC---CHhhHHHhhcccccCCCCcEEEEEcCCcc
Q 047894 261 ---EVQVQLKKAVDG-KRFLLVLDDVWNE---DYSLWVDLKAPFLAAEPNSKMIVTTRNSN 314 (1087)
Q Consensus 261 ---~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~~s~ilvTtr~~~ 314 (1087)
+.....++.+.. +-=|+|||++-.. .....+.+...+.....+..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122223344443 4559999998322 11233445554544556789999999743
No 277
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.00057 Score=68.56 Aligned_cols=104 Identities=24% Similarity=0.294 Sum_probs=70.0
Q ss_pred CCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCc--ccCCCCCcCEE
Q 047894 576 KFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPP--KMRNLINLNHL 653 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 653 (1087)
.+.+.+.|++.||.++.+ +.+.+++.|++|.||-|+|+.|- .+..+++|+.|.|+.|. +..+-+ .+.+|++||.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 345667777888887766 44567888888888888888773 37788888888888765 444322 25678888888
Q ss_pred eecCCccccccCcc-----CCCCCCCCccCeeee
Q 047894 654 DIRGAKLLKEMPCG-----MKELKKLRTLSNFIV 682 (1087)
Q Consensus 654 ~l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~ 682 (1087)
.|..|.....-+.. +.-|++|+.|++..+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 88887754433322 445666666665433
No 278
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.65 E-value=0.05 Score=53.47 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=60.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccc-cc--cc--cCCC--eEEEEEeCCcccHHHHHHHHHHHhhcCCC-------CcccH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK-AV--RD--SKFD--VKAWVCVSDVFDVLGISKALLESITSAAS-------DLKTL 259 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~-~~--~~--~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~~ 259 (1087)
.+++|+|+.|+|||||.+.+..+. .+ .. ..|. ...|+ .+ .+.++.+..... ..+.-
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 589999999999999999886321 11 10 0111 12222 22 344555543211 11112
Q ss_pred HHHHHHHHHhhCCC--ceEEEEecCCCC-CHhhHHHhhccccc-CCCCcEEEEEcCCccccc
Q 047894 260 NEVQVQLKKAVDGK--RFLLVLDDVWNE-DYSLWVDLKAPFLA-AEPNSKMIVTTRNSNVAS 317 (1087)
Q Consensus 260 ~~~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~~s~ilvTtr~~~v~~ 317 (1087)
+...-.+...+-.+ +-++++|+.-.. +......+...+.. ...|..||++|.+.....
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 23333455666667 788999987332 22233333333322 124677888888766543
No 279
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.65 E-value=0.22 Score=53.47 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=33.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
++.++=..+....++.++... +.|.|.|.+|+||||+|+.++....
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHHHC
Confidence 344555555566677777532 3589999999999999999988643
No 280
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.64 E-value=0.013 Score=57.34 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
++.|.|.+|+||||+|..+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6899999999999999999765
No 281
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.59 E-value=0.042 Score=58.17 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=71.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEE----EEeCCc---------
Q 047894 169 FGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAW----VCVSDV--------- 235 (1087)
Q Consensus 169 vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~w----v~~s~~--------- 235 (1087)
-+|..+..--+++|+.+ ....|.+.|.+|.|||-||..+.-..-.....|...+- +.+++.
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 34667777778888764 45799999999999999998754322111113432221 112221
Q ss_pred ccHHHHHHHHH---HHhhcCCCCcccHHHHHHHHH---------HhhCCC---ceEEEEecCCCCCHhhHHHhhcccccC
Q 047894 236 FDVLGISKALL---ESITSAASDLKTLNEVQVQLK---------KAVDGK---RFLLVLDDVWNEDYSLWVDLKAPFLAA 300 (1087)
Q Consensus 236 ~~~~~~~~~i~---~~l~~~~~~~~~~~~~~~~l~---------~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~ 300 (1087)
..+......|. +.+....... ...+...+. .+.+|+ .-+||+|...+-...+...+ +-..
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~ 375 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPG--DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRA 375 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccc--hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhc
Confidence 01111222222 2222211111 111111111 223454 45999999987665444444 3346
Q ss_pred CCCcEEEEEcCCcc
Q 047894 301 EPNSKMIVTTRNSN 314 (1087)
Q Consensus 301 ~~~s~ilvTtr~~~ 314 (1087)
+.||||+.|--..+
T Consensus 376 G~GsKIVl~gd~aQ 389 (436)
T COG1875 376 GEGSKIVLTGDPAQ 389 (436)
T ss_pred cCCCEEEEcCCHHH
Confidence 78999999875433
No 282
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.57 E-value=0.12 Score=58.63 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=47.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc-HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD-VLGISKALLESITSAASDLKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (1087)
.+++.++|++|+||||++..++....... .-..+..|+...... ..+-++...+.++.+.....+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C
Confidence 46899999999999999888776543111 223456666543211 11112222233332222223344555555432 2
Q ss_pred CCceEEEEecCCC
Q 047894 272 GKRFLLVLDDVWN 284 (1087)
Q Consensus 272 ~kr~LlVlDdv~~ 284 (1087)
..-+||+|....
T Consensus 299 -~~DlVlIDt~G~ 310 (424)
T PRK05703 299 -DCDVILIDTAGR 310 (424)
T ss_pred -CCCEEEEeCCCC
Confidence 356889997643
No 283
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.55 E-value=0.055 Score=58.62 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=41.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccccc---ccCCCeEEEEEeCCcccHHHHHHHHHHHhhc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVR---DSKFDVKAWVCVSDVFDVLGISKALLESITS 251 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 251 (1087)
+...++-|+|.+|+|||+++.+++-..... +..-..++||+....++.+.+. ++++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 445789999999999999998876322111 1122468999999888887754 45555543
No 284
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.055 Score=61.57 Aligned_cols=90 Identities=18% Similarity=0.088 Sum_probs=46.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLESITSAASDLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 270 (1087)
...+++|+|.+|+||||++..+......+. ....+..++..... ...+-++...+.++.......+...+...+.+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-L 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-h
Confidence 347999999999999999988876543221 12334455443211 11111222222222211122233344444433 2
Q ss_pred CCCceEEEEecCCC
Q 047894 271 DGKRFLLVLDDVWN 284 (1087)
Q Consensus 271 ~~kr~LlVlDdv~~ 284 (1087)
. +.-+||+|....
T Consensus 427 ~-~~DLVLIDTaG~ 439 (559)
T PRK12727 427 R-DYKLVLIDTAGM 439 (559)
T ss_pred c-cCCEEEecCCCc
Confidence 3 355888888743
No 285
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.54 E-value=0.09 Score=51.51 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=60.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccC--CC---eEEEEEeCCcccHHHHHHHHHHHhhc-CCCCcccHHHHHHHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSK--FD---VKAWVCVSDVFDVLGISKALLESITS-AASDLKTLNEVQVQLK 267 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l~ 267 (1087)
.+++|+|..|.|||||++.+........+. ++ ...+ +.+..... ...+.+.+.. .....+.-+...-.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccc--cccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 589999999999999999998764321111 11 1112 22221111 0122222211 1122233334444566
Q ss_pred HhhCCCceEEEEecCCCC-CHhhHHHhhcccccCCCCcEEEEEcCCcccc
Q 047894 268 KAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA 316 (1087)
Q Consensus 268 ~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~ 316 (1087)
..+-.++-++++|+--.. +......+...+... +..||++|.+....
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 777778889999986332 222223333333222 45677777776544
No 286
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.53 E-value=0.091 Score=57.70 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=33.8
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 168 VFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
++|....+.++.+.+..-... ..-|.|+|..|+||+++|+.+.+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----DRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----CCCEEEECCCCChHHHHHHHHHHhc
Confidence 367777777777766544321 2457999999999999999997653
No 287
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.52 E-value=0.08 Score=52.11 Aligned_cols=121 Identities=23% Similarity=0.207 Sum_probs=66.9
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc--------------------------------------
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-------------------------------------- 235 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-------------------------------------- 235 (1087)
.|++|+|++|+|||||.+.+..=... =...+||.-...
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~----~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEP----DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCC----CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 58999999999999999988654322 124455532110
Q ss_pred ------ccHHHHHHHHHHHhhcCCC------CcccHHHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhccccc-CC
Q 047894 236 ------FDVLGISKALLESITSAAS------DLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA-AE 301 (1087)
Q Consensus 236 ------~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~ 301 (1087)
...++...++++.++.... ..+.-++....|.+.|.-++-++.+|..-+. |.+...++...... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 1122223333333332211 1223334445688888889999999998554 22333333333322 33
Q ss_pred CCcEEEEEcCCcccccc
Q 047894 302 PNSKMIVTTRNSNVAST 318 (1087)
Q Consensus 302 ~~s~ilvTtr~~~v~~~ 318 (1087)
.|-.+|+.|-.-..|..
T Consensus 185 eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 185 EGMTMIIVTHEMGFARE 201 (240)
T ss_pred cCCeEEEEechhHHHHH
Confidence 56666666665544443
No 288
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.50 E-value=0.041 Score=53.71 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=62.0
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc--cHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF--DVLGISKALLESITSAASDLKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (1087)
.+++|+|..|.|||||.+.++.... .....+++.-.... +..+..+ ..++.. .+.+.-+...-.+...+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK----PDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 5899999999999999999987543 23344444321111 1111111 111110 012223333445667777
Q ss_pred CCceEEEEecCCCC-CHhhHHHhhccccc-CCCCcEEEEEcCCccc
Q 047894 272 GKRFLLVLDDVWNE-DYSLWVDLKAPFLA-AEPNSKMIVTTRNSNV 315 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~~s~ilvTtr~~~v 315 (1087)
.++-++++|+.-.. +......+...+.. ...|..||++|.+...
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 78889999987432 22333333333332 1246778888887553
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.082 Score=58.81 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccccccc-CCCeEEEEEeCCcc-cHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDS-KFDVKAWVCVSDVF-DVLGISKALLESITSAASDLKTLNEVQVQLKKA 269 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 269 (1087)
..++|.++|+.|+||||.+..++........ .-..+..++..... ....-++...+.++.+.......+++...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3479999999999999999988876542210 12345555555321 112224444444544333334455555555543
Q ss_pred hCCCceEEEEecCCCC
Q 047894 270 VDGKRFLLVLDDVWNE 285 (1087)
Q Consensus 270 l~~kr~LlVlDdv~~~ 285 (1087)
.+.-+|++|.+...
T Consensus 253 --~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 --KDFDLVLVDTIGKS 266 (388)
T ss_pred --CCCCEEEEcCCCCC
Confidence 44568999988543
No 290
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.48 E-value=0.067 Score=54.96 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=66.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc-----cc--cc---CC---CeEEEEEe----CCcc--cH----------------
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKA-----VR--DS---KF---DVKAWVCV----SDVF--DV---------------- 238 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~-----~~--~~---~f---~~~~wv~~----s~~~--~~---------------- 238 (1087)
.+++|+|+.|.|||||.+.+..-.. +. +. .. ..+.||.= ...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999876221 00 00 01 23445531 1000 11
Q ss_pred ------HHHHHHHHHHhhcCC------CCcccHHHHHHHHHHhhCCCceEEEEecC----CCCCHhhHHHhhcccccCCC
Q 047894 239 ------LGISKALLESITSAA------SDLKTLNEVQVQLKKAVDGKRFLLVLDDV----WNEDYSLWVDLKAPFLAAEP 302 (1087)
Q Consensus 239 ------~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~l~~~l~~~~~ 302 (1087)
.+...+.++.++... ...+.-+.....+.+.|..++=|++||.- +.......-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 133344444443321 11222233334577888999999999974 222223334444444433
Q ss_pred CcEEEEEcCCcccc
Q 047894 303 NSKMIVTTRNSNVA 316 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~ 316 (1087)
|..||+.|-+-...
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 88999999875433
No 291
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.40 E-value=0.069 Score=55.87 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=52.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhhcC-------CCCcccHH-----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLESITSA-------ASDLKTLN----- 260 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 260 (1087)
+-++|+|.+|+|||||++.+++....+ +-+.++++-+.... .+.++..++.+.-... ..+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999875432 23456666666543 4455555554321110 01111111
Q ss_pred HHHHHHHHhh--C-CCceEEEEecC
Q 047894 261 EVQVQLKKAV--D-GKRFLLVLDDV 282 (1087)
Q Consensus 261 ~~~~~l~~~l--~-~kr~LlVlDdv 282 (1087)
...-.+.+++ + ++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122344555 3 89999999998
No 292
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.40 E-value=0.099 Score=60.64 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=43.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEe
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCV 232 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 232 (1087)
+++--.+-++++..||...-... ...+++.+.|++|+||||.++.+++.. .|+.+-|.+-
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~-~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGS-SPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccC-CCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCC
Confidence 44445566788888886533221 345799999999999999999998863 4667778653
No 293
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.39 E-value=0.08 Score=52.14 Aligned_cols=101 Identities=19% Similarity=0.124 Sum_probs=56.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEE------eCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVC------VSDVFDVLGISKALLESITSAASDLKTLNEVQVQLK 267 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 267 (1087)
.+++|+|..|+|||||++.+..-... ....+++. +.+.. ..+.-+...-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~q~~------------------~LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP----NGDNDEWDGITPVYKPQYI------------------DLSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC----CCcEEEECCEEEEEEcccC------------------CCCHHHHHHHHHH
Confidence 58999999999999999999875331 22223221 11110 0222233334566
Q ss_pred HhhCCCceEEEEecCCCC-CHhhHHHhhcccccC-CC-CcEEEEEcCCcccc
Q 047894 268 KAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLAA-EP-NSKMIVTTRNSNVA 316 (1087)
Q Consensus 268 ~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-~s~ilvTtr~~~v~ 316 (1087)
..+-.++-++++|+--.. +......+...+... .. +..||++|.+....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 677778889999987432 222222233333221 12 35677777765443
No 294
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.36 E-value=0.041 Score=53.62 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=42.4
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCc---ccHHHHHHHHHHhhCC
Q 047894 196 IPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDL---KTLNEVQVQLKKAVDG 272 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~ 272 (1087)
+.|.|.+|+|||++|.++... ....++++.-...++.+ ....|..........- ....++...+.+. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-
Confidence 679999999999999999754 12345666655555442 3333333222222111 1122333333221 2
Q ss_pred CceEEEEecC
Q 047894 273 KRFLLVLDDV 282 (1087)
Q Consensus 273 kr~LlVlDdv 282 (1087)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2347999987
No 295
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.047 Score=54.04 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=61.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhc--CCC---C---------cccH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITS--AAS---D---------LKTL 259 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~~---~---------~~~~ 259 (1087)
.+++|+|..|.|||||++.++.... .....+++.-....+.. ......+.- +.. . .+.-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 5899999999999999999987542 22333443211100000 011111110 000 0 1111
Q ss_pred HHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhccccc-CCCCcEEEEEcCCccccc
Q 047894 260 NEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA-AEPNSKMIVTTRNSNVAS 317 (1087)
Q Consensus 260 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~~s~ilvTtr~~~v~~ 317 (1087)
+...-.+...+..++-++++|+.-.. +......+...+.. ...|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 22233566777888899999997433 22223333333332 123678888888765443
No 296
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.32 E-value=0.13 Score=52.02 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhccccc--CCCCcEEEEEcCCcccccccC
Q 047894 259 LNEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA--AEPNSKMIVTTRNSNVASTMG 320 (1087)
Q Consensus 259 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~~s~ilvTtr~~~v~~~~~ 320 (1087)
-++....+.+.+-..+-+|+-|+--.. +...-..+...+.. ...|..||+.|-+..+|..+.
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 344555688888899999999974211 21222333333332 245889999999999987543
No 297
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.31 E-value=0.048 Score=54.84 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=27.5
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc
Q 047894 196 IPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV 235 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 235 (1087)
+.|.|.+|+|||++|.++...... .=..++|++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCC
Confidence 679999999999999998765432 2245778877644
No 298
>PRK05439 pantothenate kinase; Provisional
Probab=95.31 E-value=0.085 Score=56.58 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=44.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhh-cCCCCcccHHHHHHHHHHh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESIT-SAASDLKTLNEVQVQLKKA 269 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~ 269 (1087)
..+-+|+|.|.+|+||||+|+.+..-..... .-..+.-++..+-+...+.+..- ..+. ...++.-+.+.+...+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~-~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWP-EHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhC-CCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHH
Confidence 5668999999999999999998876432110 11234455555544333222210 0111 1112334555566666655
Q ss_pred hCCCc
Q 047894 270 VDGKR 274 (1087)
Q Consensus 270 l~~kr 274 (1087)
..|+.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 55554
No 299
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.21 Score=57.31 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=80.1
Q ss_pred ccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 167 EVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
.+-|-++-+.++.+.+.-.-. -+...++-|..+|++|+|||++|+.+++.... .| +++...
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~---nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM---NF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC---Ce-----eeccCH----
Confidence 455566666666655432211 01145577899999999999999999986431 33 333221
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCH-----------hhHHHhhcccccCCCCcEEEE
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY-----------SLWVDLKAPFLAAEPNSKMIV 308 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~~~~s~ilv 308 (1087)
+++.. .. ..+...+...++++-+--+.+|+||.++.-.. .....+...+........|+|
T Consensus 503 EL~sk----~v-----GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ELFSK----YV-----GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred HHHHH----hc-----CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 11100 00 11112222333333344567888887733210 112222222222222223333
Q ss_pred ---EcCCcccccc-cC---CCceeeCCCCChHhHHHHHHHhhcC
Q 047894 309 ---TTRNSNVAST-MG---PIEHYNLKSLSDDDCWSIFIKHVFE 345 (1087)
Q Consensus 309 ---Ttr~~~v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~ 345 (1087)
|-|...+-.. +. ....+.++.-+.+.-.++|+.++-.
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3344433322 22 2356778877888888899888743
No 300
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.11 Score=57.80 Aligned_cols=52 Identities=29% Similarity=0.337 Sum_probs=37.4
Q ss_pred ccccchh---hHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 167 EVFGREE---DKAKILDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 167 ~~vGr~~---~~~~l~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
++-|-|+ |+++|+++|.++.. -+..-++=|.++|++|.|||-||++|+-...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 4556654 67778888876532 1113456789999999999999999988644
No 301
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.27 E-value=0.07 Score=59.16 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=22.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 302
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.27 E-value=0.072 Score=54.79 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=71.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC-----cccHHHHHHHHHHHhhcCCC------CcccHHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD-----VFDVLGISKALLESITSAAS------DLKTLNEV 262 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~~ 262 (1087)
.+++|||.+|+||||+++.+..=.. --.+.++....+ .....+-..++++.++.... ..-+-.+.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~----pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEE----PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcC----CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 5899999999999999999987543 122334433222 12233345556666554321 11122233
Q ss_pred H-HHHHHhhCCCceEEEEecCCCCC-HhhHHHhhccccc--CCCCcEEEEEcCCcccccccCC
Q 047894 263 Q-VQLKKAVDGKRFLLVLDDVWNED-YSLWVDLKAPFLA--AEPNSKMIVTTRNSNVASTMGP 321 (1087)
Q Consensus 263 ~-~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~~s~ilvTtr~~~v~~~~~~ 321 (1087)
+ -.+.+.+.-++-++|.|..-+.- ...-..+...+.. ...|-..+..|-+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3 34777888899999999864431 1112222222222 2356777888887777665543
No 303
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.23 E-value=0.17 Score=60.17 Aligned_cols=134 Identities=11% Similarity=0.103 Sum_probs=72.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
...++|....+.++.+.+..-.. ....|.|+|..|+|||++|+.+++...... ...+.|++....+ ..+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~---~pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAK---RPFVKVNCAALSE--TLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCC---CCeEEeecCCCCH--HHHHH
Confidence 45789999999998888765432 124578999999999999999987643222 1224444443322 22221
Q ss_pred HHHHhhcCCCCc-ccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCC-----------CCcEEEEEcCC
Q 047894 245 LLESITSAASDL-KTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAE-----------PNSKMIVTTRN 312 (1087)
Q Consensus 245 i~~~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~ilvTtr~ 312 (1087)
.+....... ..... ......-....-.|+||++..-....+..+...+..+. ...+||.||..
T Consensus 266 ---~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred ---HHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 121111000 00000 00000001234468899997776666666665543221 13588887754
No 304
>PRK07667 uridine kinase; Provisional
Probab=95.20 E-value=0.024 Score=57.17 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 175 KAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 175 ~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456777775554 3448999999999999999999987643
No 305
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.059 Score=59.37 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=48.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALLESITSAASDLKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (1087)
..++.++|+.|+||||++..+......+. ....+..++.... ....+-++...+.++.+.....+..++...+. .+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 36899999999999999999987643221 1234555554332 12233344444444433322222223333333 234
Q ss_pred CCceEEEEecCCCC
Q 047894 272 GKRFLLVLDDVWNE 285 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~ 285 (1087)
++ -+|++|.....
T Consensus 215 ~~-DlVLIDTaG~~ 227 (374)
T PRK14722 215 NK-HMVLIDTIGMS 227 (374)
T ss_pred CC-CEEEEcCCCCC
Confidence 44 56669988543
No 306
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.023 Score=58.07 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=48.1
Q ss_pred CCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCC-CCCCC-C
Q 047894 726 KHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDN-CVSLP-S 803 (1087)
Q Consensus 726 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~-~~~l~-~ 803 (1087)
+.+++.|+|.|+...+. .++...+...|.|+.|+++.+.....-.... ....+|+.|.|.+... +.... .
T Consensus 70 ~~~v~elDL~~N~iSdW-------seI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDW-------SEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred hhhhhhhhcccchhccH-------HHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhh
Confidence 45677888887764332 2344455666777777777654332211111 1256777777777654 22222 4
Q ss_pred CCCcCCcceeeccCC
Q 047894 804 LGRLSSLKHLAVKGL 818 (1087)
Q Consensus 804 l~~l~~L~~L~L~~~ 818 (1087)
+..+|.++.|.++.+
T Consensus 142 l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDN 156 (418)
T ss_pred hhcchhhhhhhhccc
Confidence 556777777766653
No 307
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.68 Score=54.24 Aligned_cols=98 Identities=23% Similarity=0.265 Sum_probs=63.6
Q ss_pred CccccchhhHHHHHHHHhcCC------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVLADT------PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~------~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
.++=|.++.+.+|.+-+.-+- +.+..+..=|.++|++|.|||-+|++|+.... ..|++|-..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH----
Confidence 356788888999988764311 01112234578999999999999999998643 245566554
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCC
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWN 284 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 284 (1087)
+++..-- +.+.+.+.+.+.++-..++++|++|.+++
T Consensus 740 ----ELLNMYV-----GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ----ELLNMYV-----GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ----HHHHHHh-----cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1111111 12344555566666678999999999965
No 308
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.13 E-value=0.058 Score=59.34 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=36.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.++|+...+.++.+.+..-... ..-|.|+|..|+||+++|+.+...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~----~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPL----DKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHh
Confidence 4889998888888877654432 245889999999999999999764
No 309
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.076 Score=61.01 Aligned_cols=72 Identities=24% Similarity=0.226 Sum_probs=47.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc--cHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF--DVLGISKALLESITSAASDLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 270 (1087)
..-|.|.|+.|+|||+||+++++... +. ..-.+..|+.+.-. ..+.+.+. +...+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~-~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KD-LIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cc-cceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 45789999999999999999999865 32 44455566655431 11221111 112344556
Q ss_pred CCCceEEEEecCC
Q 047894 271 DGKRFLLVLDDVW 283 (1087)
Q Consensus 271 ~~kr~LlVlDdv~ 283 (1087)
...+-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 7789999999983
No 310
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.12 E-value=0.097 Score=57.20 Aligned_cols=60 Identities=17% Similarity=0.110 Sum_probs=41.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccc---cccCCCeEEEEEeCCcccHHHHHHHHHHHhhc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAV---RDSKFDVKAWVCVSDVFDVLGISKALLESITS 251 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 251 (1087)
+...++-|+|.+|+|||+|+.+++-.... .++.-..++||+....++..++. ++++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 44578889999999999999988632211 11122478999999988887754 45555543
No 311
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.11 E-value=0.0015 Score=77.42 Aligned_cols=184 Identities=22% Similarity=0.289 Sum_probs=99.9
Q ss_pred cCCcccEEEEecCCCccccC----CCCCCCccEEEEeecCCccccCCCCCcccEEEec-cCCCcCCccEEEeccCCCCCC
Q 047894 866 IFPRLHKLSIVECPKLSGEL----PELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVD-ECKELANLRSLLICNSTALKS 940 (1087)
Q Consensus 866 ~~~~L~~L~l~~c~~l~~~~----p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~-~~~~l~~L~~L~l~~~~~~~~ 940 (1087)
.+++|+.|.+..|..+++.. ...+++|+.|.+.+|..+.. ..+. ....+++|++|+++.|..+..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~----------~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTD----------EGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccch----------hHHHHHHHhcCcccEEeeecCccchH
Confidence 35788888888885555322 23477888888877764321 1111 122344677777777776532
Q ss_pred --CchhhhcCCCCCceEEeccCC---CCcccccC---CCC-CCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCcc
Q 047894 941 --LPEEMMENNSQLEKLYIRDCE---SLTFIARR---RLP-ASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQ 1011 (1087)
Q Consensus 941 --~~~~~~~~l~~L~~L~l~~c~---~l~~~~~~---~l~-~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 1011 (1087)
+... ..++++|+.|.+..+. .++..... ... ..+..+.+..|++++.+.+......... .
T Consensus 311 ~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~----------~ 379 (482)
T KOG1947|consen 311 SGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLG----------L 379 (482)
T ss_pred HHHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcc----------h
Confidence 1222 3456666665544443 34443321 122 2566677778888887776654322211 0
Q ss_pred EEEEeccCCC-cccCCCCCCCCCccEEEEecCCCCcccCCCC--C-CCCcCeEEEccCCCCCC
Q 047894 1012 LLRIENCRKL-ESIPDGLPNLKCLQSICIRKCPSLVSFPERG--L-PNTISAVYICECDKLEA 1070 (1087)
Q Consensus 1012 ~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~--~-~~sL~~L~i~~c~~l~~ 1070 (1087)
.+.+.+|+.+ ..+........+++.|+++.|..++.-.-.. . ...+..+.+.+|+.+..
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 3444555544 2222222233338899999988776332211 1 34567777777776553
No 312
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.10 E-value=0.0093 Score=59.92 Aligned_cols=196 Identities=19% Similarity=0.186 Sum_probs=114.4
Q ss_pred cccCCccceeeccCCCcCc-----ccccccccCCCCcEEEecCCC---CCcccCc-------ccCCCCCcCEEeecCCcc
Q 047894 596 PFEELRLLRFLNLADIDIK-----SLPESTCKLLNLEILILRNCS---RLIKLPP-------KMRNLINLNHLDIRGAKL 660 (1087)
Q Consensus 596 ~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~---~l~~lp~-------~i~~L~~L~~L~l~~~~~ 660 (1087)
.+..+..+..++||+|.|. .+...|.+-.+|+..+++.-. ....+|+ .+-++++|+..+++.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3455778999999999986 455667778899999988631 1123333 367899999999999986
Q ss_pred ccccCcc----CCCCCCCCccCeeeeCccCCCC-Ccc-ccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEE
Q 047894 661 LKEMPCG----MKELKKLRTLSNFIVGKRETAS-GLE-DLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTL 734 (1087)
Q Consensus 661 ~~~~p~~----i~~L~~L~~L~~~~~~~~~~~~-~~~-~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 734 (1087)
....|+. |++-+.|.+|...+++..+..- .+. .|..| +......+.+.|++...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------------------a~nKKaa~kp~Le~vic 164 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------------------AYNKKAADKPKLEVVIC 164 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------------------HHHhhhccCCCceEEEe
Confidence 6566654 5677888888777666544111 011 01111 11112234455665554
Q ss_pred EeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCc------CCcccCcccEEeeeCCCCCCCCC-----C
Q 047894 735 DWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWI------GDPLFCKIELLELENCDNCVSLP-----S 803 (1087)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~------~~~~l~~L~~L~L~~~~~~~~l~-----~ 803 (1087)
..+.....+ ....-..++.+.+|+.+.+..+++. |..+ +-..+.+|+.|+|.+|.....-+ .
T Consensus 165 grNRlengs-----~~~~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 165 GRNRLENGS-----KELSAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred ccchhccCc-----HHHHHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 433332221 0112233455667777777765543 2211 11235778888888877543111 3
Q ss_pred CCCcCCcceeeccCC
Q 047894 804 LGRLSSLKHLAVKGL 818 (1087)
Q Consensus 804 l~~l~~L~~L~L~~~ 818 (1087)
+...+.|+.|.+..|
T Consensus 238 l~~W~~lrEL~lnDC 252 (388)
T COG5238 238 LCEWNLLRELRLNDC 252 (388)
T ss_pred hcccchhhhccccch
Confidence 445566788888776
No 313
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.07 E-value=0.087 Score=56.10 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=41.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHh-hcCCCCcccHHHHHHHHHHh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESI-TSAASDLKTLNEVQVQLKKA 269 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~l~~~ 269 (1087)
..+.+|+|.|..|+||||+|+.+..-..... .-..+..++........+.....- .+ .....+.-+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~-~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWP-EHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcC-CCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHHH
Confidence 4568999999999999999987654322000 011244555554433332222210 00 01112344556666666555
Q ss_pred hCCC
Q 047894 270 VDGK 273 (1087)
Q Consensus 270 l~~k 273 (1087)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5544
No 314
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.05 E-value=0.041 Score=59.18 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
..++.+.|+|++|+|||.+|+.+++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 5678999999999999999999999754
No 315
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.04 E-value=0.11 Score=52.73 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=50.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhhcC-------CCCcccHHH----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALLESITSA-------ASDLKTLNE---- 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 261 (1087)
.-+.|.|.+|+|||+|+.++.+... -+..+++.+... .+..++.+++...-... ..+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~-----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD-----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT-----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc-----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3579999999999999999988743 344577777654 45555555554331111 111111111
Q ss_pred -HHHHHHHhh--CCCceEEEEecC
Q 047894 262 -VQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 262 -~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
..-.+.+++ +++++|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 111122222 799999999998
No 316
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.016 Score=53.77 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAV 219 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~ 219 (1087)
.-|.|.|++|+||||+++.+.+..+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 45899999999999999999876543
No 317
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.00 E-value=0.098 Score=51.73 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=59.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc--ccHHHHHHHHHHHhhcCCCC------------cccH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV--FDVLGISKALLESITSAASD------------LKTL 259 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~------------~~~~ 259 (1087)
.+++|+|..|.|||||.+.++.-.. .....+++.-... ...... ...+.-...+ .+.-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR----PTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 5899999999999999999987532 1223333221110 011111 1111110000 1112
Q ss_pred HHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhccccc-CCCCcEEEEEcCCccccc
Q 047894 260 NEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA-AEPNSKMIVTTRNSNVAS 317 (1087)
Q Consensus 260 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~~s~ilvTtr~~~v~~ 317 (1087)
+...-.+...+-.++-++++|+.... +......+...+.. ...|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22333466667777889999987432 22222333333322 123677888887765543
No 318
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.96 E-value=0.21 Score=53.72 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=37.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
..++.|.|.+|+||||++.+++...... +-..++|++.... ..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEcccC--HHHHHHHHHHHH
Confidence 3588899999999999999987764322 1346788887664 445555555543
No 319
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.036 Score=55.25 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=44.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHh--hcCCCCcccHHHHHHHHHHh
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESI--TSAASDLKTLNEVQVQLKKA 269 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~l~~~ 269 (1087)
.+.+|+|.|.+|+||||+|+.++..... . .++-++...-+.... .....+.. .-....+-+.+-+...|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~---~--~~~~I~~D~YYk~~~-~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV---E--KVVVISLDDYYKDQS-HLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc---C--cceEeeccccccchh-hcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4589999999999999999999986542 1 122222222211110 00111111 11122445677777888888
Q ss_pred hCCCc
Q 047894 270 VDGKR 274 (1087)
Q Consensus 270 l~~kr 274 (1087)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 320
>PRK14974 cell division protein FtsY; Provisional
Probab=94.92 E-value=0.17 Score=55.19 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=47.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc--HHHHHHHHHHHhhcCCC---CcccHHH-HHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD--VLGISKALLESITSAAS---DLKTLNE-VQVQ 265 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~ 265 (1087)
++.++.++|++|+||||++..++...... .+ .++.+... .+. ..+-++...+.++.+.. ...+... ....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GF-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CC-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46899999999999999888887654322 23 23344432 222 22223444455543221 1122222 2233
Q ss_pred HHHhhCCCceEEEEecCCCC
Q 047894 266 LKKAVDGKRFLLVLDDVWNE 285 (1087)
Q Consensus 266 l~~~l~~kr~LlVlDdv~~~ 285 (1087)
+........-+|++|-....
T Consensus 215 i~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHHhCCCCEEEEECCCcc
Confidence 33322222338999988554
No 321
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.91 E-value=0.036 Score=54.52 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.1
Q ss_pred EEEEEecCCChHHHHHHHHhcccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998743
No 322
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.89 E-value=0.099 Score=57.41 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=40.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
+...++-|+|.+|+|||++|.+++-...... ..-..++||+....++...+. ++++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHc
Confidence 3457899999999999999999875432111 011478999998887777654 334444
No 323
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.17 Score=61.28 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=73.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCC--CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADTPRDH--PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~--~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
.++|-++.+..|.+.+.....+-. .+...+.+.|+.|+|||-||+.++.-.- +..+..+-+..+.. ..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F---gse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF---GSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc---CCccceEEechhhh------hh-
Confidence 477888888888888876542211 2567888999999999999999877532 12333444444432 11
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhCCCce-EEEEecCCCCCHhhHHHhhccc
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVDGKRF-LLVLDDVWNEDYSLWVDLKAPF 297 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l 297 (1087)
+.+.++.+.. ... .+....+.+.++.++| +|+||||...+......+...+
T Consensus 633 vskligsp~g-yvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 633 VSKLIGSPPG-YVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred hhhccCCCcc-ccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 3333333221 111 1122356677778876 7779999888776666555544
No 324
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.84 E-value=0.031 Score=54.07 Aligned_cols=85 Identities=25% Similarity=0.280 Sum_probs=65.3
Q ss_pred ccCCCCcccEEEecCCCCcccCccccC-CccceeeccCCCcCcccc--cccccCCCCcEEEecCCCCCcccCc----ccC
Q 047894 573 LLPKFKRLRMLSLQGYCIGELPIPFEE-LRLLRFLNLADIDIKSLP--ESTCKLLNLEILILRNCSRLIKLPP----KMR 645 (1087)
Q Consensus 573 ~~~~~~~Lr~L~l~~~~i~~lp~~i~~-l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~ 645 (1087)
.|..++.|..|.|.+|.|+.+-..++. +++|..|.|.+|+|.++- .-+..++.|++|-+-+|. +..-+. .++
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLY 137 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEE
Confidence 377889999999999999888555554 456999999999988764 346678899999988865 333332 378
Q ss_pred CCCCcCEEeecCC
Q 047894 646 NLINLNHLDIRGA 658 (1087)
Q Consensus 646 ~L~~L~~L~l~~~ 658 (1087)
++++|+.||+.+-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 8999999998764
No 325
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.84 E-value=0.085 Score=54.24 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHhcccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999987643
No 326
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.81 E-value=0.24 Score=54.09 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=54.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc-HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD-VLGISKALLESITSAASDLKTLNEVQVQLKKA 269 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 269 (1087)
.+.+++.++|+.|+||||++..++.....++ ..+.+|+...... ..+-++...+.++.+.....+..++...+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH
Confidence 3458999999999999999999887543221 3456676654322 22223344444443222234555665555443
Q ss_pred h-CCCceEEEEecCCC
Q 047894 270 V-DGKRFLLVLDDVWN 284 (1087)
Q Consensus 270 l-~~kr~LlVlDdv~~ 284 (1087)
- .+..-+|++|-...
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 2 13456888998754
No 327
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.80 E-value=0.025 Score=58.17 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
-|.|+|++|+||||+|+.+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998764
No 328
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.80 E-value=0.16 Score=50.23 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHhcccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
++.++|++|+||||++..++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999887643
No 329
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.80 E-value=0.024 Score=60.21 Aligned_cols=90 Identities=21% Similarity=0.345 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHH-hhcCCC
Q 047894 176 AKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLES-ITSAAS 254 (1087)
Q Consensus 176 ~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~ 254 (1087)
..+++.+.... +-|.++|+.|+|||++++......... .| ...-++.+...+...+. .+++. +.....
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~~~--~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~ 91 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLDSD--KY-LVITINFSAQTTSNQLQ-KIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCSTTC--CE-EEEEEES-TTHHHHHHH-HCCCTTECECTT
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCCcc--cc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCC
Confidence 45666665432 568999999999999999988653311 11 23345555543333322 22221 111000
Q ss_pred CcccHHHHHHHHHHhhCCCceEEEEecCCCCC
Q 047894 255 DLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED 286 (1087)
Q Consensus 255 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~ 286 (1087)
. .-.--.+|+.++++||+--..
T Consensus 92 ~----------~~gP~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 92 R----------VYGPPGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp E----------EEEEESSSEEEEEEETTT-S-
T ss_pred C----------CCCCCCCcEEEEEecccCCCC
Confidence 0 000014789999999995443
No 330
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.78 E-value=0.15 Score=57.57 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+.++.++|.+|+||||+|..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999988887654
No 331
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.86 Score=45.56 Aligned_cols=156 Identities=16% Similarity=0.188 Sum_probs=81.6
Q ss_pred ccccc-hhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 167 EVFGR-EEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 167 ~~vGr-~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
+++|+ +..+.+|.+.+.-+-. -+-.+++-|.++|++|.|||-||+.|++.. .+.|+.||...
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgse-- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSE-- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHH--
Confidence 45654 6666666555432110 111455678999999999999999998752 34567777542
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC-----------HhhHH---Hhhccccc--CCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED-----------YSLWV---DLKAPFLA--AEP 302 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~---~l~~~l~~--~~~ 302 (1087)
+.+..+.. +..-..++...- -..-+-+|+.|.+++.. .+... ++...+.. ...
T Consensus 217 --lvqk~ige------gsrmvrelfvma---rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 217 --LVQKYIGE------GSRMVRELFVMA---REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred --HHHHHhhh------hHHHHHHHHHHH---HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 11111110 001111121111 13456788888874421 11111 12222222 234
Q ss_pred CcEEEEEcCCcccccc--c---CCCceeeCCCCChHhHHHHHHHhh
Q 047894 303 NSKMIVTTRNSNVAST--M---GPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
+-+||.+|..-++.+. . ...+.++.++-+++.-.++++-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 5688877765544432 1 223567778877777777765443
No 332
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.76 E-value=0.12 Score=56.14 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=38.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccc---cccCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAV---RDSKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
+...++.|+|.+|+|||+++..++..... .++.-..++|++....++...+ .++++.+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 44589999999999999999988753211 1112235789998887776653 3344443
No 333
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.46 Score=53.97 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=74.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDG 272 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (1087)
+.=|.++|++|+|||-||++|++... ..| ++|-.. +++..- + ..+.......+++.-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag---~NF-----isVKGP----ELlNkY---V------GESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG---ANF-----ISVKGP----ELLNKY---V------GESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc---Cce-----EeecCH----HHHHHH---h------hhHHHHHHHHHHHhhcC
Confidence 34578999999999999999999744 234 444433 111111 0 11122233334444467
Q ss_pred CceEEEEecCCCCC-----Hhh------HHHhhccccc--CCCCcEEEEEcCCccccc-c-cCCC---ceeeCCCCChHh
Q 047894 273 KRFLLVLDDVWNED-----YSL------WVDLKAPFLA--AEPNSKMIVTTRNSNVAS-T-MGPI---EHYNLKSLSDDD 334 (1087)
Q Consensus 273 kr~LlVlDdv~~~~-----~~~------~~~l~~~l~~--~~~~s~ilvTtr~~~v~~-~-~~~~---~~~~l~~L~~~~ 334 (1087)
-+++|++|.++.-- ... ..++...+.. ...|--||-.|-..++.+ . +.+. ....++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 79999999984321 111 2223333332 234555665555444432 1 2222 456778788888
Q ss_pred HHHHHHHhhcC
Q 047894 335 CWSIFIKHVFE 345 (1087)
Q Consensus 335 ~~~lf~~~~~~ 345 (1087)
-.++++...-.
T Consensus 684 R~~ILK~~tkn 694 (802)
T KOG0733|consen 684 RVAILKTITKN 694 (802)
T ss_pred HHHHHHHHhcc
Confidence 88898887754
No 334
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.73 E-value=0.062 Score=59.25 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=49.6
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC-cc
Q 047894 166 PEVFGREEDKAKILDMVLAD--------TPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD-VF 236 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~--------~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~ 236 (1087)
..++|.++.++.+.-.+... .-...-.++-|.++|++|+|||++|+.+.......--+.+..-++..+. ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 45788888888887666542 0000023467899999999999999999886543211223222222222 22
Q ss_pred cHHHHHHHHHHHh
Q 047894 237 DVLGISKALLESI 249 (1087)
Q Consensus 237 ~~~~~~~~i~~~l 249 (1087)
+...+.+.+.+..
T Consensus 92 dvE~i~r~l~e~A 104 (441)
T TIGR00390 92 DVESMVRDLTDAA 104 (441)
T ss_pred CHHHHHHHHHHHH
Confidence 4556666655544
No 335
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.72 E-value=0.16 Score=51.85 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=36.4
Q ss_pred HHHHhhCCCceEEEEecCCCC-CHhhHHHhhccccc-CCCCcEEEEEcCCcccccccCCCceeeCCCC
Q 047894 265 QLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA-AEPNSKMIVTTRNSNVASTMGPIEHYNLKSL 330 (1087)
Q Consensus 265 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~~s~ilvTtr~~~v~~~~~~~~~~~l~~L 330 (1087)
.+...+-.++-++++|+--.. +......+...+.. ...|..||++|.+...... ...+.++..
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 355666677889999986432 22333334333332 2246788888887654443 455666553
No 336
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.69 E-value=0.04 Score=55.77 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=57.0
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
.+|.|+|+.|+||||++..+...... .....++...... .. ..... ..+-.......+.......++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~---~~~~~i~t~e~~~-E~--~~~~~-~~~i~q~~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK---NKTHHILTIEDPI-EF--VHESK-RSLINQREVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh---cCCcEEEEEcCCc-cc--cccCc-cceeeecccCCCccCHHHHHHHHhcCC
Confidence 37899999999999999987765431 2233444322211 10 00000 000000000111223445677777777
Q ss_pred ceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCccc
Q 047894 274 RFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNV 315 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v 315 (1087)
+=+|++|++.+. +........ ...|-.++.|+-...+
T Consensus 75 pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 889999999543 333332222 2245567766655443
No 337
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.69 E-value=0.12 Score=52.13 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=45.0
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCC---eEEEEEeCCcccHHHHHHHHHHHh----hcCCCCcccHHHHHHHHH
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFD---VKAWVCVSDVFDVLGISKALLESI----TSAASDLKTLNEVQVQLK 267 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 267 (1087)
||+|.|.+|+||||+|+.+.......+ .. ....+.............. -... .......-+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~--~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG--IPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT--TTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC--cCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 689999999999999999987654322 22 2334443333332222221 1111 111123456777777777
Q ss_pred HhhCCCceEE
Q 047894 268 KAVDGKRFLL 277 (1087)
Q Consensus 268 ~~l~~kr~Ll 277 (1087)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665443
No 338
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.60 E-value=0.2 Score=51.98 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=30.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++.|.|.+|+||||+|.+++...... . ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN--G-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC--C-CcEEEEeCCC--CHHHHHHHH
Confidence 4689999999999999987665543211 1 3456666443 344555554
No 339
>PTZ00301 uridine kinase; Provisional
Probab=94.59 E-value=0.055 Score=54.84 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..+|+|.|.+|+||||+|+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 3789999999999999999887654
No 340
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.55 E-value=0.025 Score=52.75 Aligned_cols=21 Identities=48% Similarity=0.702 Sum_probs=19.4
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 047894 196 IPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~ 216 (1087)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.55 E-value=0.2 Score=56.72 Aligned_cols=88 Identities=19% Similarity=0.117 Sum_probs=46.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhhcCCCC---cccHHHHHHHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALLESITSAASD---LKTLNEVQVQLK 267 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 267 (1087)
.+.+|.++|.+|+||||+|..++...... .+ .++-|+.... ....+-++.+.++++.+... ..+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~--g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK--GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc--CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35789999999999999999998765422 22 3344444322 11233344445554432211 122222222222
Q ss_pred HhhCCCceEEEEecCC
Q 047894 268 KAVDGKRFLLVLDDVW 283 (1087)
Q Consensus 268 ~~l~~kr~LlVlDdv~ 283 (1087)
+.+.+. -+||+|...
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 222333 567778763
No 342
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.53 E-value=0.24 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
+..|+|++|+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999988754
No 343
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.52 E-value=0.38 Score=50.84 Aligned_cols=127 Identities=15% Similarity=0.093 Sum_probs=65.5
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhc--
Q 047894 174 DKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITS-- 251 (1087)
Q Consensus 174 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-- 251 (1087)
..+.++..+... +...-++|+|+.|+|||||.+.+..... .....+++.-...... +-..++......
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~ 166 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIV-DERSEIAGCVNGVP 166 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecc-hhHHHHHHHhcccc
Confidence 344555555532 2346789999999999999999987653 2223334321111100 001222222111
Q ss_pred CCC-----C-cccHHHHHHHHHHhh-CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccc
Q 047894 252 AAS-----D-LKTLNEVQVQLKKAV-DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA 316 (1087)
Q Consensus 252 ~~~-----~-~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~ 316 (1087)
+.. + ...... ...+...+ ...+-++++|.+.. .+.+..+...+. .|..||+||-+..+.
T Consensus 167 q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 167 QHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 000 0 111111 11122222 25788999999853 344555555442 478899999865543
No 344
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.52 E-value=0.063 Score=49.99 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=32.9
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcC
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSA 252 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 252 (1087)
+|.|-|++|+||||+|+.+.++....- | +.-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~--------v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL--------V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce--------e------eccHHHHHHHHHcCCC
Confidence 689999999999999999998754321 1 2335678888877653
No 345
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.51 E-value=0.12 Score=57.52 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=19.8
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
.+++|+|++|+||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999998754
No 346
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.099 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|..|.|||||++.+....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998653
No 347
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.50 E-value=0.16 Score=52.80 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
+...+++|.|++|+|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999987654
No 348
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.50 E-value=0.027 Score=56.97 Aligned_cols=83 Identities=27% Similarity=0.337 Sum_probs=54.3
Q ss_pred ccCCccceeeccCCCcCcccccccccCCCCcEEEecCC--CCCcccCcccCCCCCcCEEeecCCccccccCcc---CCCC
Q 047894 597 FEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNC--SRLIKLPPKMRNLINLNHLDIRGAKLLKEMPCG---MKEL 671 (1087)
Q Consensus 597 i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~---i~~L 671 (1087)
...+..|++|++.+..++.+- .+-.|++|++|+++.| +....++.-..++++|++|++++|+ ++. +.. +.++
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhh
Confidence 344556666666666655431 2345889999999998 5555666666778999999999998 442 333 3444
Q ss_pred CCCCccCeeee
Q 047894 672 KKLRTLSNFIV 682 (1087)
Q Consensus 672 ~~L~~L~~~~~ 682 (1087)
.+|..|..+.+
T Consensus 116 ~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 116 ENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccC
Confidence 55555555444
No 349
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.49 E-value=0.018 Score=34.27 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=18.8
Q ss_pred cccEEEecCCCCcccCccccCC
Q 047894 579 RLRMLSLQGYCIGELPIPFEEL 600 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~lp~~i~~l 600 (1087)
+|++||+++|.++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 350
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.48 E-value=0.16 Score=53.42 Aligned_cols=89 Identities=25% Similarity=0.197 Sum_probs=56.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHH-hhcCC-CCcccHHH---HHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLES-ITSAA-SDLKTLNE---VQVQ 265 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~-~~~~~~~~---~~~~ 265 (1087)
+..+++=|+|+.|+||||+|.+++-.... .-..++|++.-+.++...+ +++... +..-. ....+.++ ....
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~---~g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQK---PGGKAAFIDTEHALDPERA-KQLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhc---CCCeEEEEeCCCCCCHHHH-HHHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 56689999999999999999998765432 3347899999998888764 344444 22111 12233333 2333
Q ss_pred HHHhhCCCceEEEEecCC
Q 047894 266 LKKAVDGKRFLLVLDDVW 283 (1087)
Q Consensus 266 l~~~l~~kr~LlVlDdv~ 283 (1087)
+......+--|+|+|.+-
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 333333345699999883
No 351
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.46 E-value=0.25 Score=59.68 Aligned_cols=157 Identities=17% Similarity=0.113 Sum_probs=80.3
Q ss_pred ccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHH
Q 047894 167 EVFGREEDKAKILDMVLADTP------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLG 240 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 240 (1087)
++.|.+...+++.+.+.-... -+..-.+-|.++|++|+|||++|+.+.....+ .| +.++.+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~---~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---PF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---CE---EEEehHH------
Confidence 466777666666554432110 00011234899999999999999999875431 22 2222221
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC----------HhhHHHhhccc----cc--CCCCc
Q 047894 241 ISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED----------YSLWVDLKAPF----LA--AEPNS 304 (1087)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~~l----~~--~~~~s 304 (1087)
+. .... ......+...+.......+.+|++|+++.-. ...+......+ .. ...+.
T Consensus 221 ~~----~~~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FV----EMFV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hH----Hhhh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 11 0000 0111222333334445578899999984421 11122222211 11 12344
Q ss_pred EEEEEcCCcccccc-c----CCCceeeCCCCChHhHHHHHHHhhc
Q 047894 305 KMIVTTRNSNVAST-M----GPIEHYNLKSLSDDDCWSIFIKHVF 344 (1087)
Q Consensus 305 ~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 344 (1087)
-||.||...+..+. . .-.+.+.++..+.++-.+++..+..
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 55557765543321 1 1235678888888888888877653
No 352
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.44 E-value=1.1 Score=48.88 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=33.8
Q ss_pred eeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHH
Q 047894 324 HYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAA 373 (1087)
Q Consensus 324 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 373 (1087)
++++++++.+|+..++.-+.-..--. .....+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR-SRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc-cCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998766332211 11233455677777789999654
No 353
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.42 E-value=0.18 Score=50.97 Aligned_cols=43 Identities=26% Similarity=0.194 Sum_probs=28.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccC-------CCeEEEEEeCCcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSK-------FDVKAWVCVSDVF 236 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~s~~~ 236 (1087)
.++.|+|++|+||||++..+.......... -..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 478999999999999999887765432211 1367888877663
No 354
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.41 E-value=0.17 Score=51.38 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=59.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccc--ccccc--CCC--------------eEEEEEeCCcccH--HHHHHHHHHHhhcCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK--AVRDS--KFD--------------VKAWVCVSDVFDV--LGISKALLESITSAA 253 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~--~~~~~--~f~--------------~~~wv~~s~~~~~--~~~~~~i~~~l~~~~ 253 (1087)
.+++|+|..|.|||||.+.+.... ....+ .|+ ..+++ +.+.... .....+++... .
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~---~ 102 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYV---N 102 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhc---c
Confidence 589999999999999999987752 11000 000 00111 1111100 00111111111 0
Q ss_pred CCcccHHHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhcccccC-CCCcEEEEEcCCccccc
Q 047894 254 SDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLAA-EPNSKMIVTTRNSNVAS 317 (1087)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~~s~ilvTtr~~~v~~ 317 (1087)
...+.-+...-.+...+-.++-++++|+.-.. +......+...+... ..+..||++|.+.....
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 11222233334566777778889999987432 223333333333321 23677888887765544
No 355
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.41 E-value=0.083 Score=58.34 Aligned_cols=84 Identities=23% Similarity=0.241 Sum_probs=50.3
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC-cc
Q 047894 166 PEVFGREEDKAKILDMVLAD--------TPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD-VF 236 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~--------~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~ 236 (1087)
..++|.++.++.+..++... ..........+.++|++|+|||++|+.+.......--+++...|...+. ..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 45899999999988877541 0000012367899999999999999999876532211223332332221 22
Q ss_pred cHHHHHHHHHHHh
Q 047894 237 DVLGISKALLESI 249 (1087)
Q Consensus 237 ~~~~~~~~i~~~l 249 (1087)
+.....+++.+..
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 4555666655544
No 356
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.40 E-value=0.22 Score=52.05 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=34.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
+...++.|.|.+|+|||++|.++...... .-..++||+.... ..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeCC--HHHHHHH
Confidence 45589999999999999999987654321 2356788887653 3344444
No 357
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.38 E-value=0.2 Score=53.24 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=48.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH--HHHHHHHHHHhhcCC---CCcccH-HHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV--LGISKALLESITSAA---SDLKTL-NEVQV 264 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~---~~~~~~-~~~~~ 264 (1087)
...+++.++|++|+||||++..++...... -..++++.... +.. .+-+....+..+... ....+. .....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 345899999999999999999888665322 23455665543 222 122222333333211 111222 22223
Q ss_pred HHHHhhCCCceEEEEecCCC
Q 047894 265 QLKKAVDGKRFLLVLDDVWN 284 (1087)
Q Consensus 265 ~l~~~l~~kr~LlVlDdv~~ 284 (1087)
.+.....+..-++|+|-...
T Consensus 146 ~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHCCCCEEEEeCCCC
Confidence 34444444556888897744
No 358
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.36 E-value=0.038 Score=62.77 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=53.0
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEE-EeCCcccHHHHHHHHHHHhh----c
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWV-CVSDVFDVLGISKALLESIT----S 251 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv-~~s~~~~~~~~~~~i~~~l~----~ 251 (1087)
++++++..-. .-.-..|+|.+|+|||||++.+.+.... ++-++.++| -+......- .+|-..+. .
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVa 474 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEV---TDMQRSVKGEVIA 474 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhH---HHHHHhccceEEE
Confidence 4666665542 2246799999999999999999886432 144444443 344332211 22333331 1
Q ss_pred CCCCcc-c----HHHHHHHHHHhh--CCCceEEEEecC
Q 047894 252 AASDLK-T----LNEVQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 252 ~~~~~~-~----~~~~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
...+.. . ...+.-.+.+++ .++.+||++|++
T Consensus 475 sT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 475 STFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 111111 1 112222344444 689999999998
No 359
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.36 E-value=0.029 Score=45.37 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
++.|.|.+|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998763
No 360
>PRK10867 signal recognition particle protein; Provisional
Probab=94.34 E-value=0.14 Score=57.89 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+.+|.++|.+|+||||+|..++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 458999999999999998887776543
No 361
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.34 E-value=0.18 Score=56.68 Aligned_cols=85 Identities=22% Similarity=0.177 Sum_probs=48.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCC------CCcccHH-----HH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAA------SDLKTLN-----EV 262 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~~~~~~-----~~ 262 (1087)
..++|+|..|+|||||++.+..... ....++|.......++.++....+....... .+..... ..
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~----pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA----FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC----CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 5789999999999999998876532 2224444443334455544444443321110 1111111 11
Q ss_pred HHHHHHhh--CCCceEEEEecC
Q 047894 263 QVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 263 ~~~l~~~l--~~kr~LlVlDdv 282 (1087)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 12233444 589999999998
No 362
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.33 E-value=0.034 Score=53.03 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999854
No 363
>PRK08233 hypothetical protein; Provisional
Probab=94.31 E-value=0.034 Score=55.65 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3789999999999999999998754
No 364
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.24 E-value=0.036 Score=56.69 Aligned_cols=27 Identities=44% Similarity=0.695 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+...+|+|+|++|+||||||+.+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998653
No 365
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.22 E-value=0.25 Score=54.08 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=41.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccc---cccCCCeEEEEEeCCcccHHHHHHHHHHHhh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAV---RDSKFDVKAWVCVSDVFDVLGISKALLESIT 250 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 250 (1087)
+...++-|+|.+|+|||++|..++-.... .++.-..++||+....++.+++ .++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 44578899999999999999887743221 1111236899999998888775 45555554
No 366
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.22 E-value=0.037 Score=56.79 Aligned_cols=27 Identities=37% Similarity=0.599 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998764
No 367
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.17 E-value=0.22 Score=58.59 Aligned_cols=134 Identities=14% Similarity=0.196 Sum_probs=74.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
...++|+...++++.+.+..-... ...|.|+|..|+|||++|+.+.+...... ...+.|++....+ ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~----~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~---~p~v~v~c~~~~~--~~~e~ 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS----DLNVLILGETGVGKELVARAIHAASPRAD---KPLVYLNCAALPE--SLAES 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC----CCcEEEECCCCccHHHHHHHHHHhCCcCC---CCeEEEEcccCCh--HHHHH
Confidence 356899999999988888764432 24689999999999999999987643222 1234555554322 11111
Q ss_pred HHHHhhcCCCCc-cc-HHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCC-----------CCcEEEEEcC
Q 047894 245 LLESITSAASDL-KT-LNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAE-----------PNSKMIVTTR 311 (1087)
Q Consensus 245 i~~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~ilvTtr 311 (1087)
.+....... .. .......+. ....=-|+||++..-....+..+...+..+. ...+||.||.
T Consensus 257 ---~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 257 ---ELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred ---HhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence 121111100 00 000000111 1122247899997776666666665543221 2458888886
Q ss_pred Cc
Q 047894 312 NS 313 (1087)
Q Consensus 312 ~~ 313 (1087)
..
T Consensus 331 ~~ 332 (509)
T PRK05022 331 RD 332 (509)
T ss_pred CC
Confidence 43
No 368
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.14 E-value=0.28 Score=55.99 Aligned_cols=117 Identities=23% Similarity=0.267 Sum_probs=61.5
Q ss_pred EEEEEEecCCChHHH-HHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCC----------c------
Q 047894 194 VVIPIVGMGGIGKTT-LAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASD----------L------ 256 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTt-La~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------~------ 256 (1087)
.||.|+|..|+|||| ||+.+|.+--. -...+-++-.+......+.+.+.+.++....+ .
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~edGY~----~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~ 447 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYEDGYA----DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTK 447 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhcccc----cCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCcee
Confidence 699999999999976 67777765211 12223222223333445666677766443211 0
Q ss_pred ----ccHHHHHHHHHHhhCCCceEEEEecCCCCCH--hhHHHhhcccccCCCCcEEEEEcCCcc
Q 047894 257 ----KTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY--SLWVDLKAPFLAAEPNSKMIVTTRNSN 314 (1087)
Q Consensus 257 ----~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~~~~~s~ilvTtr~~~ 314 (1087)
.+---+.+.+.+..-+|--.||+|.+.+... +..-.+..........-|+|||+-.-+
T Consensus 448 IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 448 IKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD 511 (1042)
T ss_pred EEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc
Confidence 0111222333333334556899999865431 111112222222345779999998644
No 369
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.14 E-value=0.16 Score=53.91 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=30.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD 234 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 234 (1087)
+...++.|.|.+|+|||++|.+++..... .-..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecC
Confidence 45579999999999999999998654321 224678888764
No 370
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.11 E-value=2 Score=46.24 Aligned_cols=156 Identities=9% Similarity=0.039 Sum_probs=86.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc--------cccccCCCeEEEEEe-CCcccHHHHHHHHHHHhhcCCCCcccHHHHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK--------AVRDSKFDVKAWVCV-SDVFDVLGISKALLESITSAASDLKTLNEVQ 263 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~--------~~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 263 (1087)
..+..++|..|.||+++|..+.+.. .... |.+-..++.. +......++. ++.+.+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~-~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE-LPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC-CCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 3567799999999999999886653 1111 2222333321 1112222211 2222221100
Q ss_pred HHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEc-CCcccccc-cCCCceeeCCCCChHhHHHHHHH
Q 047894 264 VQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTT-RNSNVAST-MGPIEHYNLKSLSDDDCWSIFIK 341 (1087)
Q Consensus 264 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 341 (1087)
.-.+++=++|+|++..........+...+-....++.+|++| ....+... ......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 002567788999987666666777777766555666666655 44444332 22336799999999998877765
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 342 HVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
. + . .++.+..++...+|.--|+..
T Consensus 161 ~--~---~-----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 K--N---K-----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred c--C---C-----ChhHHHHHHHHcCCHHHHHHH
Confidence 3 1 1 112344556666663334444
No 371
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.11 E-value=0.07 Score=49.74 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=30.7
Q ss_pred CCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCC-CCcCeEEEccCCCCCCCCC-CCCCCC
Q 047894 1002 SSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLP-NTISAVYICECDKLEAPPN-DMHKLN 1079 (1087)
Q Consensus 1002 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~-~sL~~L~i~~c~~l~~~p~-~l~~l~ 1079 (1087)
..|.++++|+.+.+.++ ....-...+..+++|+.+.+.. .++.++...+. ..|+.+.+.+ .+..+++ .+.+++
T Consensus 52 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~~--~~~~i~~~~F~~~~ 126 (129)
T PF13306_consen 52 NAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIPS--NITKIEENAFKNCT 126 (129)
T ss_dssp TTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-TT--B-SS----GGG---
T ss_pred eeeeccccccccccccc-ccccccccccccccccccccCc--cccEEchhhhcCCCceEEEECC--CccEECCccccccc
Confidence 34556666777777542 2222223556677777777754 36666654443 2566666653 3333333 355555
Q ss_pred CC
Q 047894 1080 SL 1081 (1087)
Q Consensus 1080 ~L 1081 (1087)
+|
T Consensus 127 ~l 128 (129)
T PF13306_consen 127 KL 128 (129)
T ss_dssp --
T ss_pred cC
Confidence 55
No 372
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.06 E-value=0.063 Score=57.57 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=45.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
...|+|.++.++++++.+.+...+....-+++.++|+.|.||||||..+-+-.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457999999999999999876654446678999999999999999999877544
No 373
>PTZ00035 Rad51 protein; Provisional
Probab=94.06 E-value=0.4 Score=52.75 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=39.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccc---cccCCCeEEEEEeCCcccHHHHHHHHHHHhh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAV---RDSKFDVKAWVCVSDVFDVLGISKALLESIT 250 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 250 (1087)
+...++.|+|.+|+|||+++..++-.... .++.-..++|++....++.+. +.++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 44589999999999999999988643221 111223567998887776665 344444443
No 374
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.62 Score=54.95 Aligned_cols=157 Identities=16% Similarity=0.133 Sum_probs=82.7
Q ss_pred ccccchhhHHHHHHHHh---cCCC----CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 167 EVFGREEDKAKILDMVL---ADTP----RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~---~~~~----~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
.+.|.+...+.+.+.+. .... .+....+.+.++|++|.|||.||+.+++... ..| +.+... +
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~---~~f-----i~v~~~-~-- 311 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR---SRF-----ISVKGS-E-- 311 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC---CeE-----EEeeCH-H--
Confidence 45556665555544432 2211 0114556899999999999999999999533 133 222211 1
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC-------H----hhHHHhhcccccCC--CCcEE
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED-------Y----SLWVDLKAPFLAAE--PNSKM 306 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~----~~~~~l~~~l~~~~--~~s~i 306 (1087)
++... -......+...+..+.+..+..|++|+++.-. . .....+...+.... .+..|
T Consensus 312 -l~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 312 -LLSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred -Hhccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 11000 01122223334445556789999999983310 0 11222222222222 22234
Q ss_pred EEEcCCcccccc-c----CCCceeeCCCCChHhHHHHHHHhhc
Q 047894 307 IVTTRNSNVAST-M----GPIEHYNLKSLSDDDCWSIFIKHVF 344 (1087)
Q Consensus 307 lvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 344 (1087)
|-||-.....+. + .-...+.+++-+.++..++|..+.-
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 444443332221 1 1125788999999999999998874
No 375
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.02 E-value=0.05 Score=53.27 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=29.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD 237 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 237 (1087)
..++.+.|+.|+|||.+|+.+..-... + .....+-+.++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~-~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-G-SERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--S-SCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-C-CccchHHHhhhcccc
Confidence 367899999999999999999876432 1 234555666554433
No 376
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.13 Score=50.02 Aligned_cols=117 Identities=22% Similarity=0.213 Sum_probs=61.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
.+++|+|..|.|||||++.+..... .....+++......... .......+.-.. ....-+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~----~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK----PTSGEILIDGKDIAKLP--LEELRRRIGYVP-QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCccEEEECCEEcccCC--HHHHHhceEEEe-eCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999987643 23344444322111100 011111111100 0122233333466666677
Q ss_pred ceEEEEecCCCC-CHhhHHHhhccccc-CCCCcEEEEEcCCccccc
Q 047894 274 RFLLVLDDVWNE-DYSLWVDLKAPFLA-AEPNSKMIVTTRNSNVAS 317 (1087)
Q Consensus 274 r~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~~s~ilvTtr~~~v~~ 317 (1087)
+-++++|+.-.. +......+...+.. ...+..++++|.+.....
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 889999987432 22223333333222 112567888887655443
No 377
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.02 E-value=0.3 Score=53.58 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=40.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccccc---ccCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVR---DSKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
+...++-|+|.+|+|||+++.+++...... +..-..++||+....++...+. ++++.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 345789999999999999999987653221 0011378999998887777643 344443
No 378
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.01 E-value=0.1 Score=55.10 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhcccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.|.|.|.+|+||||+|+++.....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 379
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.99 E-value=0.26 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|..|.|||||++.+..-.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 380
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.98 E-value=0.09 Score=53.72 Aligned_cols=63 Identities=25% Similarity=0.212 Sum_probs=37.3
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHH
Q 047894 174 DKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGI 241 (1087)
Q Consensus 174 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 241 (1087)
+..++++.+.... ++..+|+|.|+||+|||||...+...+..++ +=-.++-|.=|..++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERG-KRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcC-CceEEEEECCCCCCCCCcc
Confidence 4556666666543 3457999999999999999999988776443 3333444444444443333
No 381
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.93 E-value=0.083 Score=48.71 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 173 EDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 173 ~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
++.+++-+.+...- ....+|.+.|.-|+||||+++.+++...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44555555554332 2235899999999999999999988654
No 382
>PRK06547 hypothetical protein; Provisional
Probab=93.93 E-value=0.049 Score=53.35 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
....+|.|.|.+|+||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998753
No 383
>PRK06762 hypothetical protein; Provisional
Probab=93.90 E-value=0.044 Score=53.83 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998753
No 384
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.86 E-value=0.22 Score=55.75 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=50.0
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhhcCC-------CCcccHHH----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLESITSAA-------SDLKTLNE---- 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~---- 261 (1087)
..++|+|..|+|||||++.+.... ..+.++.+-+.... .+.++...++..-.... .+......
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 578999999999999999998752 33556666665443 34445554433211111 11111111
Q ss_pred -HHHHHHHhh--CCCceEEEEecC
Q 047894 262 -VQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 262 -~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
....+.+++ +++++|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 112244444 689999999999
No 385
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.86 E-value=0.12 Score=54.55 Aligned_cols=52 Identities=29% Similarity=0.321 Sum_probs=39.5
Q ss_pred CCccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc
Q 047894 165 EPEVFGREEDKAK---ILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVR 220 (1087)
Q Consensus 165 ~~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~ 220 (1087)
...+||..+.++. |.+++.+..- ..+.|.|+|++|.|||+||..+.+.....
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~----aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKM----AGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcc----cccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4568998766554 6777766543 33789999999999999999999876433
No 386
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.84 E-value=0.25 Score=51.57 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=62.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcC-------CC---------
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSA-------AS--------- 254 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~--------- 254 (1087)
+...++.|.|.+|+|||++|.++...... .-..++|++..... ..+... +++++.. ..
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~~~--~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~ 91 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEESR--ESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMK 91 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccCCH--HHHHHH-HHHhCCCHHHHhhcCCEEEEEcccc
Confidence 34579999999999999999987654321 23467888875443 233222 1111110 00
Q ss_pred --------CcccHHHHHHHHHHhhCC---CceEEEEecCCCC---CHhhHHHhhccccc--CCCCcEEEEEcCC
Q 047894 255 --------DLKTLNEVQVQLKKAVDG---KRFLLVLDDVWNE---DYSLWVDLKAPFLA--AEPNSKMIVTTRN 312 (1087)
Q Consensus 255 --------~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~~s~ilvTtr~ 312 (1087)
...+.+++...+++..+. +.-.+|+|.+..- +...-..+...+.. ...|..+++|+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 92 EKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred ccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 012456666666665543 3458899987321 11111111111111 2458888888763
No 387
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.83 E-value=0.086 Score=51.09 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
+.|.+.|.+|+||||+|+++..-.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 3578899999999999999987543
No 388
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.81 E-value=0.21 Score=48.35 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=59.0
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEE--EEEeCCcccHHHHHHHHHHHhhcC--CC-------Ccc----c
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKA--WVCVSDVFDVLGISKALLESITSA--AS-------DLK----T 258 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~--wv~~s~~~~~~~~~~~i~~~l~~~--~~-------~~~----~ 258 (1087)
..|-|++..|.||||.|..+.-..... .+.+.+ |+-..........+..+ .+.-. .. +.. .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~--g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH--GKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 578888889999999998876654322 222211 33322222333333332 11100 00 000 1
Q ss_pred HHHHHHHHHHhhCC-CceEEEEecCCCC---CHhhHHHhhcccccCCCCcEEEEEcCCc
Q 047894 259 LNEVQVQLKKAVDG-KRFLLVLDDVWNE---DYSLWVDLKAPFLAAEPNSKMIVTTRNS 313 (1087)
Q Consensus 259 ~~~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~~s~ilvTtr~~ 313 (1087)
..+.....++.+.. +--++|||.+-.. ..-..+++...+.....+..||+|-|..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11222334444544 4459999998211 1122344555454445677999999975
No 389
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.80 E-value=0.24 Score=47.42 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998764
No 390
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.77 E-value=0.53 Score=48.14 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|..|.|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998654
No 391
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.75 E-value=0.34 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|..|+|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 392
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.75 E-value=0.37 Score=58.22 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=31.9
Q ss_pred HHHHhhCCCceEEEEecCCCC-CHhhHHHhhccccc-CCCCcEEEEEcCCcccc
Q 047894 265 QLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA-AEPNSKMIVTTRNSNVA 316 (1087)
Q Consensus 265 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~~s~ilvTtr~~~v~ 316 (1087)
.+.+.+-.++-+++||..-+. |...-..+...+.. ....+.|+||-|...+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 467778889999999997443 22222233444443 23367788888876554
No 393
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.74 E-value=0.41 Score=49.60 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|..|+|||||++.+..-.
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 394
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.74 E-value=0.043 Score=53.90 Aligned_cols=26 Identities=42% Similarity=0.516 Sum_probs=23.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
-.+|+|-||-|+||||||+.+.+...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999998754
No 395
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.73 E-value=0.24 Score=55.64 Aligned_cols=85 Identities=21% Similarity=0.164 Sum_probs=47.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCC-------CCcccHHH-----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAA-------SDLKTLNE----- 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~----- 261 (1087)
..++|+|..|+|||||++.+..... ....++.....+...+.++..+.+..-.... .+......
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999998887543 1222333223333445555544433221111 11111111
Q ss_pred HHHHHHHhh--CCCceEEEEecC
Q 047894 262 VQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 262 ~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
....+.+++ +++++|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122244544 688999999998
No 396
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.71 E-value=0.12 Score=55.43 Aligned_cols=85 Identities=22% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----CcccHHHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----DLKTLNEVQVQ 265 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~ 265 (1087)
+..+++-|+|+.|+||||||.++...... .-..++||.....++... ++.++.... .+...++....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q~---~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQK---QGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhhc---ccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHH
Confidence 44579999999999999999999876432 335688999988766543 333433221 22344444455
Q ss_pred HHHhhC-CCceEEEEecCC
Q 047894 266 LKKAVD-GKRFLLVLDDVW 283 (1087)
Q Consensus 266 l~~~l~-~kr~LlVlDdv~ 283 (1087)
....++ +..-++|+|-|.
T Consensus 123 ~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHHTTSESEEEEE-CT
T ss_pred HHHHhhcccccEEEEecCc
Confidence 555443 445688999883
No 397
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.71 E-value=0.08 Score=54.14 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
+++.|+|+.|.||||+.+.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7889999999999999998863
No 398
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.67 E-value=0.5 Score=48.95 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998754
No 399
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.67 E-value=0.36 Score=53.74 Aligned_cols=82 Identities=22% Similarity=0.206 Sum_probs=47.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----CcccHHHHHHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----DLKTLNEVQVQL 266 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 266 (1087)
...++.|.|.+|+|||||+.+++..... .-..++|++.... ..++.. -++.++.... ...+.+++...+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEES--PEQIKL-RADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 3479999999999999999999876432 2245778776543 223222 1233332211 112344444433
Q ss_pred HHhhCCCceEEEEecC
Q 047894 267 KKAVDGKRFLLVLDDV 282 (1087)
Q Consensus 267 ~~~l~~kr~LlVlDdv 282 (1087)
. +.+.-+||+|.+
T Consensus 155 ~---~~~~~lVVIDSI 167 (372)
T cd01121 155 E---ELKPDLVIIDSI 167 (372)
T ss_pred H---hcCCcEEEEcch
Confidence 2 235567888887
No 400
>PRK06217 hypothetical protein; Validated
Probab=93.66 E-value=0.094 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.3
Q ss_pred EEEEEecCCChHHHHHHHHhcccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.|.|.|.+|+||||+|+.+.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999987654
No 401
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.52 Score=47.04 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=36.2
Q ss_pred HHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhccccc-CCCCcEEEEEcCCcccccccCCCce
Q 047894 262 VQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA-AEPNSKMIVTTRNSNVASTMGPIEH 324 (1087)
Q Consensus 262 ~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~~s~ilvTtr~~~v~~~~~~~~~ 324 (1087)
....+.+.+-=++=+.|||..++- +.+....+...+.. ..+|+.+++.|..+.++....+...
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 334455555566779999998654 22222222222111 2347777777777888877765543
No 402
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.64 E-value=0.046 Score=66.89 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=54.5
Q ss_pred CCceEEEEecCCCC-CHhhHHHh----hcccccCCCCcEEEEEcCCcccccccCCCceeeCCCCCh-HhHHHHHHHhhcC
Q 047894 272 GKRFLLVLDDVWNE-DYSLWVDL----KAPFLAAEPNSKMIVTTRNSNVASTMGPIEHYNLKSLSD-DDCWSIFIKHVFE 345 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~~s~ilvTtr~~~v~~~~~~~~~~~l~~L~~-~~~~~lf~~~~~~ 345 (1087)
..+-|+++|..... +..+...+ ...+. ..|+.+|+||...++.........+....+.. ++......+ +.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Yk--l~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYK--LL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEE--EC
Confidence 47899999998543 22233333 22332 35789999999876643221111111000110 010000000 11
Q ss_pred CCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCCCHHHHHHHHh
Q 047894 346 SRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTTRHDAWDDILE 393 (1087)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~w~~~~~ 393 (1087)
.+.+. ...|-+|++++ |+|-.+..-|..+......++..++.
T Consensus 477 ~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~ 518 (771)
T TIGR01069 477 KGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIE 518 (771)
T ss_pred CCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 11111 22445576666 88888888887776554444544444
No 403
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.62 E-value=0.53 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|..|.|||||++.+....
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 589999999999999999997653
No 404
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.60 E-value=0.32 Score=54.71 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=49.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhhcCC-------CCcccHHH----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALLESITSAA-------SDLKTLNE---- 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~---- 261 (1087)
..++|+|..|+|||||++.+++.. ..+..+++-+... ..+.++..+.+..-+... .+......
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 578999999999999999998763 2344555555543 334444444433211110 11111111
Q ss_pred -HHHHHHHhh--CCCceEEEEecC
Q 047894 262 -VQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 262 -~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
....+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 122244444 589999999999
No 405
>PRK03839 putative kinase; Provisional
Probab=93.60 E-value=0.047 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999864
No 406
>PHA00729 NTP-binding motif containing protein
Probab=93.58 E-value=0.09 Score=53.20 Aligned_cols=25 Identities=48% Similarity=0.542 Sum_probs=21.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
...|.|+|.+|+||||||..+.+..
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998753
No 407
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.57 E-value=0.49 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998765
No 408
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.53 E-value=0.43 Score=48.17 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|.|..|.|||||.+.+..-.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 409
>PRK04040 adenylate kinase; Provisional
Probab=93.52 E-value=0.058 Score=53.85 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998764
No 410
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.52 E-value=0.42 Score=51.79 Aligned_cols=84 Identities=21% Similarity=0.221 Sum_probs=47.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeC-CcccHHHHHHHHHHHhhcC-------CCCcccHH-----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVS-DVFDVLGISKALLESITSA-------ASDLKTLN----- 260 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 260 (1087)
..++|+|..|+|||||.+.+..... .+..+...+. +..++.++.......-... ..+.....
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 5789999999999999999987633 2333333333 2334455444444332111 11111111
Q ss_pred HHHHHHHHhh--CCCceEEEEecC
Q 047894 261 EVQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 261 ~~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
...-.+.+++ +++.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1112233333 589999999998
No 411
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.49 E-value=0.5 Score=44.60 Aligned_cols=85 Identities=20% Similarity=0.247 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHHHhhcCCC------CcccHHHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhcccc--cCCCCcEE
Q 047894 236 FDVLGISKALLESITSAAS------DLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFL--AAEPNSKM 306 (1087)
Q Consensus 236 ~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~--~~~~~s~i 306 (1087)
.+.....++.+++++.... ....-++....+.+.+..++-+++-|.--.. +...-+.+..-+. ....|+..
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~Tl 200 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTL 200 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceE
Confidence 3455566777777765432 2334455666788889999999999964221 1112222222221 24578888
Q ss_pred EEEcCCcccccccC
Q 047894 307 IVTTRNSNVASTMG 320 (1087)
Q Consensus 307 lvTtr~~~v~~~~~ 320 (1087)
++.|.++..|..|.
T Consensus 201 VlVTHD~~LA~Rc~ 214 (228)
T COG4181 201 VLVTHDPQLAARCD 214 (228)
T ss_pred EEEeCCHHHHHhhh
Confidence 88899988887764
No 412
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.45 E-value=0.47 Score=57.07 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=48.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLESITSAASDLKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (1087)
.+++.++|+.|+||||++..++....... ....+..++..... ...+-++...+.++.+.....+..++...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE-GADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc-CCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 47999999999999999999887653221 12244555543221 12233344444444333333345555444443 33
Q ss_pred CCceEEEEecCC
Q 047894 272 GKRFLLVLDDVW 283 (1087)
Q Consensus 272 ~kr~LlVlDdv~ 283 (1087)
++ -+|++|=..
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 33 367777664
No 413
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.42 E-value=0.043 Score=49.07 Aligned_cols=23 Identities=52% Similarity=0.629 Sum_probs=19.7
Q ss_pred EEEEecCCChHHHHHHHHhcccc
Q 047894 196 IPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
|-|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999887643
No 414
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.41 E-value=0.26 Score=59.37 Aligned_cols=85 Identities=21% Similarity=0.197 Sum_probs=56.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----CcccHHHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----DLKTLNEVQVQ 265 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~ 265 (1087)
+..+++-|.|.+|+||||||.+++..... .-..++|+.....++. ..+++++.... .....++....
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~---~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~ 129 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQA---AGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEI 129 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHH
Confidence 45588999999999999999887654321 2245789988877663 24555554322 23344555555
Q ss_pred HHHhhC-CCceEEEEecCC
Q 047894 266 LKKAVD-GKRFLLVLDDVW 283 (1087)
Q Consensus 266 l~~~l~-~kr~LlVlDdv~ 283 (1087)
+...++ ++.-+||+|-+-
T Consensus 130 i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 130 ADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHhhcCCCeEEEEcchh
Confidence 555554 456689999974
No 415
>PRK08149 ATP synthase SpaL; Validated
Probab=93.41 E-value=0.26 Score=55.29 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=48.9
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC-cccHHHHHHHHHHHhhcCC-------CCcccHH-----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD-VFDVLGISKALLESITSAA-------SDLKTLN----- 260 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 260 (1087)
..++|+|..|+|||||++.++... ..+.++...+.. ..++.++..+......... .+.....
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 578999999999999999998753 233333333332 2345555555554322111 1111111
Q ss_pred HHHHHHHHhh--CCCceEEEEecC
Q 047894 261 EVQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 261 ~~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
.....+.+++ +++++|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1122233444 589999999999
No 416
>PRK04328 hypothetical protein; Provisional
Probab=93.36 E-value=0.34 Score=51.07 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV 235 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 235 (1087)
+...++.|.|.+|+|||++|.++...... .-...+|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~---~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEEeeCC
Confidence 34578999999999999999997655321 3356788887664
No 417
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.34 E-value=0.38 Score=49.83 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhccccc--CCCCcEEEEEcCCccccccc
Q 047894 262 VQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA--AEPNSKMIVTTRNSNVASTM 319 (1087)
Q Consensus 262 ~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~~s~ilvTtr~~~v~~~~ 319 (1087)
....+...|..+.=+++||.--+. |.....++...+.. ...|..||+++-+-+.|...
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 334567788888889999975221 11111222222222 24578899999887766543
No 418
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.34 E-value=1 Score=47.81 Aligned_cols=132 Identities=9% Similarity=0.039 Sum_probs=71.7
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc-----------cccCCCeEEEEEeCCcccHHHHH
Q 047894 174 DKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAV-----------RDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 174 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~-----------~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..+++...+..+. -.....++|+.|+||+++|..+....-- .+.|.|...........
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~------ 73 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGR------ 73 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCC------
Confidence 3456666665542 2357789999999999999877553210 11244432221111100
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHh-----hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC-cccc
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKA-----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN-SNVA 316 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~-~~v~ 316 (1087)
.-..++.. .+.+. ..+++=++|+|++..-....+..+...+-....++.+|++|.+ ..+.
T Consensus 74 -------------~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll 139 (290)
T PRK05917 74 -------------LHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLP 139 (290)
T ss_pred -------------cCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCc
Confidence 01122221 12222 2355668899999887778888888777655556666655554 4443
Q ss_pred ccc-CCCceeeCCCC
Q 047894 317 STM-GPIEHYNLKSL 330 (1087)
Q Consensus 317 ~~~-~~~~~~~l~~L 330 (1087)
..+ +....+.+.++
T Consensus 140 ~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 140 PTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHhcceEEEccch
Confidence 221 11234555554
No 419
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=2.3 Score=43.99 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=57.1
Q ss_pred ccccchhhHHHHHHHHhcCC------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHH
Q 047894 167 EVFGREEDKAKILDMVLADT------PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLG 240 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~------~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 240 (1087)
.+.|.+..++.|.+.+.-+- .......+-|.++|++|.||+-||++|+.... ..|.+||.. +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--------STFFSvSSS----D 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSS----D 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--------CceEEeehH----H
Confidence 47788888888877653211 01114568899999999999999999997633 123444432 1
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHh-hCCCceEEEEecCC
Q 047894 241 ISKALLESITSAASDLKTLNEVQVQLKKA-VDGKRFLLVLDDVW 283 (1087)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~ 283 (1087)
+....+ .+.+.+...+.+. -+.|+-+|++|.++
T Consensus 202 LvSKWm----------GESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 202 LVSKWM----------GESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred HHHHHh----------ccHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 111111 1122333333332 25788999999984
No 420
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.33 E-value=0.058 Score=54.29 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..+|.|+|++|+||||+|+.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 421
>PRK05973 replicative DNA helicase; Provisional
Probab=93.30 E-value=0.9 Score=46.84 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=60.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCC-----------CCcccHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAA-----------SDLKTLN 260 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~~~~~ 260 (1087)
...++.|.|.+|+|||++|.++...... .-..+++++.... ..++...+.. ++-.. .+....+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~---~Ge~vlyfSlEes--~~~i~~R~~s-~g~d~~~~~~~~~~d~~d~~~~~ 136 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMK---SGRTGVFFTLEYT--EQDVRDRLRA-LGADRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEEeCC--HHHHHHHHHH-cCCChHHhccceEeecCCCCCHH
Confidence 3468899999999999999998765432 2235667766554 3344444322 11110 1112333
Q ss_pred HHHHHHHHhhCCCceEEEEecCCCCC----HhhHHHhhccccc--CCCCcEEEEEcCCcc
Q 047894 261 EVQVQLKKAVDGKRFLLVLDDVWNED----YSLWVDLKAPFLA--AEPNSKMIVTTRNSN 314 (1087)
Q Consensus 261 ~~~~~l~~~l~~kr~LlVlDdv~~~~----~~~~~~l~~~l~~--~~~~s~ilvTtr~~~ 314 (1087)
.....+.+ +.+.-++|+|-+..-+ ..........+.. ...|..||+|+....
T Consensus 137 ~ii~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r 194 (237)
T PRK05973 137 YIIARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDR 194 (237)
T ss_pred HHHHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 33333333 2234599999873211 1111221111211 246788888877543
No 422
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.075 Score=49.74 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.++|+|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998886653
No 423
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.28 E-value=0.083 Score=54.69 Aligned_cols=64 Identities=27% Similarity=0.194 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 176 AKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 176 ~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
.+++..+.... +...+|+|.|.||+|||||...+......++ +--.++-|.-|..++--.++.+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G-~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERG-HRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCC-cEEEEEEECCCCCCCCcccccc
Confidence 45666665544 4557999999999999999999888776554 4445555655666655444444
No 424
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.28 E-value=0.48 Score=49.57 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=53.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccc-cccCCCeEEEEEeCCcc-cHHHHHHHHHHHhhcCC-------CCcccHHH---
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAV-RDSKFDVKAWVCVSDVF-DVLGISKALLESITSAA-------SDLKTLNE--- 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 261 (1087)
+-++|.|..|+|||+|+..+.++... ++.+-+.++++-+.+.. +..++..++.+.=.... .+......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 45799999999999999998876431 11135678888887653 45555555544311111 01111111
Q ss_pred --HHHHHHHhh--C-CCceEEEEecC
Q 047894 262 --VQVQLKKAV--D-GKRFLLVLDDV 282 (1087)
Q Consensus 262 --~~~~l~~~l--~-~kr~LlVlDdv 282 (1087)
....+.+++ + ++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 122344554 3 78999999998
No 425
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.28 E-value=0.66 Score=47.17 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988764
No 426
>PRK00625 shikimate kinase; Provisional
Probab=93.27 E-value=0.055 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.|.++|++|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998754
No 427
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.24 E-value=0.43 Score=48.07 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|..|.|||||++.++..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999853
No 428
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.22 E-value=0.35 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
...+++++|+.|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999988764
No 429
>PRK05922 type III secretion system ATPase; Validated
Probab=93.22 E-value=0.46 Score=53.45 Aligned_cols=84 Identities=13% Similarity=0.227 Sum_probs=47.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC-cccHHHHHHHHHHHhhcCCC-------CcccHH-----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD-VFDVLGISKALLESITSAAS-------DLKTLN----- 260 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~-------~~~~~~----- 260 (1087)
..++|+|..|+|||||.+.+..... .+....+.++. .....+.+.+.......... +.....
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999987632 23333333332 23334444444333222111 111111
Q ss_pred HHHHHHHHhh--CCCceEEEEecC
Q 047894 261 EVQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 261 ~~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
.....+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122344444 589999999999
No 430
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.17 E-value=0.45 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
..|++++|+.|+||||++..++....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999987653
No 431
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.86 Score=44.04 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=31.3
Q ss_pred HHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhccc-c-cCCCCcEEEEEcCCcc
Q 047894 262 VQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPF-L-AAEPNSKMIVTTRNSN 314 (1087)
Q Consensus 262 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l-~-~~~~~s~ilvTtr~~~ 314 (1087)
....+.+..-.++-|.|||.....-...-.++...+ . ....|..||.||-.+-
T Consensus 137 RRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 137 RRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 334466666788999999997543211112222222 2 2457888999987543
No 432
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.15 E-value=0.07 Score=54.02 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=57.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcccccc-ccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC---CcccHHHHHHHHHHh
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVR-DSKFDVKAWVCVSDVFDVLGISKALLESITSAAS---DLKTLNEVQVQLKKA 269 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 269 (1087)
+++.|.|+.|.||||+.+.+..-.-.. -+.| |.... ..-.+...+...+..... .......-..++...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 689999999999999998875332110 0011 11100 001122222222222111 011111111112222
Q ss_pred --hCCCceEEEEecCCCCC-HhhH----HHhhcccccCCCCcEEEEEcCCcccccccC
Q 047894 270 --VDGKRFLLVLDDVWNED-YSLW----VDLKAPFLAAEPNSKMIVTTRNSNVASTMG 320 (1087)
Q Consensus 270 --l~~kr~LlVlDdv~~~~-~~~~----~~l~~~l~~~~~~s~ilvTtr~~~v~~~~~ 320 (1087)
+..++-|+++|...... ..+. ..+...+.. .|+.+|++|-..+++..+.
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 23567899999974421 2221 122333332 3889999999888776543
No 433
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.09 E-value=0.56 Score=52.76 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+.+|.++|..|+||||+|..++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998876543
No 434
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.08 E-value=4.4 Score=42.49 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=61.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
+.+.|+|+.|+|||+-++.+++... ...-+..+..+....+...+........ ..........+...+.+.
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~p-------~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSNP-------NALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccCc-------cceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccC
Confidence 4889999999999999999998532 2233445555566555555555444322 223334445555666888
Q ss_pred ceEEEEecCCCCCHhhHHHhhcc
Q 047894 274 RFLLVLDDVWNEDYSLWVDLKAP 296 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~l~~~ 296 (1087)
.-+|++|+...-.....+.+...
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i 188 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRI 188 (297)
T ss_pred cceeeeehhhccChHHHHHHHHH
Confidence 88999999876665666665543
No 435
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.07 E-value=0.18 Score=45.52 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=31.7
Q ss_pred cccchhhHHH----HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 047894 168 VFGREEDKAK----ILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 168 ~vGr~~~~~~----l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
++|-.-..+. |.+.+....+ ..+-|++.+|.+|+|||.+++.+++.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p---~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNP---RKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCC---CCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4555444444 4444444322 56789999999999999998887765
No 436
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=1.2 Score=49.34 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=38.9
Q ss_pred EEE-EEcCCccccc--ccCCC---ceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHh
Q 047894 305 KMI-VTTRNSNVAS--TMGPI---EHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGG 378 (1087)
Q Consensus 305 ~il-vTtr~~~v~~--~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 378 (1087)
||| .||-..+-.+ .+.+. ..+.|.-=+.+....|+.+...... ++ .+..+|.+...|.-+.=..++.
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h----~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DH----RLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---Cc----chhHHHHHHhhcCccCHHHHHH
Confidence 555 5666544332 12222 4578888889998899988774332 22 2444566555555554444444
Q ss_pred hh
Q 047894 379 LL 380 (1087)
Q Consensus 379 ~l 380 (1087)
.|
T Consensus 412 ~l 413 (457)
T KOG0743|consen 412 EL 413 (457)
T ss_pred HH
Confidence 33
No 437
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.03 E-value=0.0049 Score=60.36 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=68.0
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEE
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHL 653 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 653 (1087)
+..++..++||++.|.+..+-..|.-+..|..|+++.+.|..+|+.++.+..+..+++..|. ....|.+++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence 45567788888888887777777777888888888888888888888888888888877644 67888888888888888
Q ss_pred eecCCc
Q 047894 654 DIRGAK 659 (1087)
Q Consensus 654 ~l~~~~ 659 (1087)
+.-++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 887776
No 438
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.01 E-value=0.19 Score=55.59 Aligned_cols=105 Identities=20% Similarity=0.112 Sum_probs=63.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALL 246 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 246 (1087)
.++|+++....+...+.... -+.+.|.+|+|||+||+.+..... ....+|.+.......++.....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHhcCchh
Confidence 38888888888887776553 478999999999999999998643 1235666666655555443332
Q ss_pred HHhhcCCCCcccHHHHHHHHHHhhC-----CCceEEEEecCCCCCHhhHHHhhc
Q 047894 247 ESITSAASDLKTLNEVQVQLKKAVD-----GKRFLLVLDDVWNEDYSLWVDLKA 295 (1087)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~ 295 (1087)
-....... ....+.. .-+.++.+|.++......-..+..
T Consensus 91 ~~~~~~~~----------~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~ 134 (329)
T COG0714 91 YAALLLEP----------GEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLE 134 (329)
T ss_pred HhhhhccC----------CeEEEecCCcccccceEEEEeccccCCHHHHHHHHH
Confidence 22110000 0000011 111599999998876544444443
No 439
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.00 E-value=0.46 Score=50.13 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|..|.|||||++.++.-.
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998653
No 440
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.98 E-value=0.61 Score=50.33 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHH
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALL 246 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~ 246 (1087)
++++.+..-.. -..++|.|..|+|||+|++++.+.. +-+.++++-+... ..+.+++.++-
T Consensus 146 rvID~l~Pi~k-----Gqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPVVK-----GGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhccccccC-----CCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 45666654432 2478999999999999999999863 4457777777654 34555555543
No 441
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.97 E-value=0.9 Score=47.50 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|..|.|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999988654
No 442
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.96 E-value=0.057 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998753
No 443
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.94 E-value=0.4 Score=57.27 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=22.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
...++|+|+.|+|||||++.+..-+.
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999976543
No 444
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.93 E-value=0.22 Score=51.51 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=60.8
Q ss_pred ccccchhhHHHHHHHHhcCCCC-CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeE-EEEEeCCcccHHHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADTPR-DHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVK-AWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~-~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~-~wv~~s~~~~~~~~~~~ 244 (1087)
.++|..-.++.|+..+.+.-.+ ...++-+++.+|.+|+||.-.++.+++.....+-+-+.+ .+|..-+.+....+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i--- 159 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI--- 159 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH---
Confidence 4556555555555554432111 115678999999999999999999887653222111111 11111111111110
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhC-CCceEEEEecCCCCCHhhHHHhhc
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVD-GKRFLLVLDDVWNEDYSLWVDLKA 295 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~ 295 (1087)
..--++++.+++..++ -+|-|+|+|+|+.-...-.+.+..
T Consensus 160 -----------e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkp 200 (344)
T KOG2170|consen 160 -----------EDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKP 200 (344)
T ss_pred -----------HHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhh
Confidence 0012344455555543 479999999997655444444433
No 445
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.92 E-value=0.057 Score=48.81 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=16.9
Q ss_pred EEEEecCCChHHHHHHHHhccc
Q 047894 196 IPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
|.|+|.+|+||||+|+.++...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 6799999999999999998864
No 446
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.90 E-value=0.39 Score=54.08 Aligned_cols=84 Identities=25% Similarity=0.319 Sum_probs=48.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC-cccHHHHHHHHHHHhhcC-------CCCcccHHHH---
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD-VFDVLGISKALLESITSA-------ASDLKTLNEV--- 262 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~--- 262 (1087)
..++|+|..|+|||||++.+.+.. +.+..+++.+.. ...+.+...+....-... ..+.......
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 578999999999999999998753 344455555544 334444444432210000 0111111111
Q ss_pred --HHHHHHhh--CCCceEEEEecC
Q 047894 263 --QVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 263 --~~~l~~~l--~~kr~LlVlDdv 282 (1087)
...+.+++ +++++|+++||+
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCH
Confidence 12244444 588999999999
No 447
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.89 E-value=0.41 Score=54.07 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=49.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcC-------CCCcccHHH-----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSA-------ASDLKTLNE----- 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 261 (1087)
..++|.|..|+|||||++.+...... -..+++..-.....+.++.+.+...-... ..+......
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999999876431 12344444444445555555544331111 011111111
Q ss_pred HHHHHHHhh--CCCceEEEEecC
Q 047894 262 VQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 262 ~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
....+.+++ +++++|+++||+
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112244444 588999999998
No 448
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.86 E-value=0.28 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEecCCChHHHHHHHHhcccc
Q 047894 196 IPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
+++.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999987653
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.86 E-value=0.076 Score=52.93 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|++|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999987754
No 450
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.85 E-value=0.76 Score=47.59 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|..|.|||||++.+...
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 451
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.85 E-value=0.47 Score=53.40 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=47.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhhcC-------CCCcccHHH----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALLESITSA-------ASDLKTLNE---- 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 261 (1087)
..++|+|..|+|||||++.+.+... .+..+.+.+... ....++...+...-... ..+......
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 5789999999999999998887532 233444444443 33444444433321110 011111111
Q ss_pred -HHHHHHHhh--CCCceEEEEecC
Q 047894 262 -VQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 262 -~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
....+.+++ +++++|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 112234444 689999999999
No 452
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.84 E-value=0.51 Score=47.95 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=31.1
Q ss_pred HHHHhhCCCceEEEEecCCCC-CHhhHH-HhhcccccC-CC-CcEEEEEcCCccccc
Q 047894 265 QLKKAVDGKRFLLVLDDVWNE-DYSLWV-DLKAPFLAA-EP-NSKMIVTTRNSNVAS 317 (1087)
Q Consensus 265 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~-~l~~~l~~~-~~-~s~ilvTtr~~~v~~ 317 (1087)
.+...+..++-++++|+.-.. +..... .+...+... .. |..||++|.+.....
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 355667788899999997443 222223 333333322 22 567888888766554
No 453
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.83 E-value=0.39 Score=57.14 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=59.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCC-------cccHHHHHHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASD-------LKTLNEVQVQL 266 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l 266 (1087)
++..|.|.+|.||||++..+..........-...+.+......-...+...+...+..-... ......+.+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 58899999999999999988765321110112456666555544444444443322111000 00111111111
Q ss_pred HHhhC--------CCc---eEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCc
Q 047894 267 KKAVD--------GKR---FLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNS 313 (1087)
Q Consensus 267 ~~~l~--------~kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~ 313 (1087)
..... +.+ -++|+|.+.-.+......+..+++ +++|+|+-=-..
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~ 302 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRD 302 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchh
Confidence 11111 111 289999985444444555555554 467877654433
No 454
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.81 E-value=0.14 Score=47.60 Aligned_cols=113 Identities=21% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCC
Q 047894 921 CKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSS 1000 (1087)
Q Consensus 921 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~ 1000 (1087)
+.++++|+.+.+.+. ...++...+..+++|+.+.+.+. +..++... +.+|.+|+.+.+.. ......
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~---------F~~~~~l~~i~~~~-~~~~i~ 73 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN--LTSIGDNA---------FSNCKSLESITFPN-NLKSIG 73 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST--TSCE-TTT---------TTT-TT-EEEEETS-TT-EE-
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc--ccccceee---------eecccccccccccc-cccccc
Confidence 334445555555431 23344444455666666666542 44333221 22333344333322 222222
Q ss_pred CCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCC
Q 047894 1001 PSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPER 1051 (1087)
Q Consensus 1001 ~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~ 1051 (1087)
...|..+++|+.+.+..+ +...-...+.+. +|+.+.+.+ .++.++..
T Consensus 74 ~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~ 120 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEEN 120 (129)
T ss_dssp TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----
T ss_pred cccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCc
Confidence 344566788888888664 332223456666 888877764 55555553
No 455
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.80 E-value=0.13 Score=49.05 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 173 EDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 173 ~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+.+++|.+++.. ++++++|..|||||||+..+..+.
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 446777777743 588999999999999999998763
No 456
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.18 Score=53.85 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=33.6
Q ss_pred cccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 168 VFGREEDKAKILDMVLADTP------RDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+.|.++.++-|.+++.-+-. ......+-|..+|++|.|||-||++|+..-
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 55666666655555432110 011455788999999999999999999864
No 457
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.79 E-value=0.096 Score=49.78 Aligned_cols=26 Identities=42% Similarity=0.521 Sum_probs=23.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAV 219 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~ 219 (1087)
.+|-+.|.+|+||||||+++.+....
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~ 28 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFA 28 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999987653
No 458
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.78 E-value=0.19 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.|.|+|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998653
No 459
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.77 E-value=0.15 Score=53.10 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=51.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcC---------------CCC
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSA---------------ASD 255 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~---------------~~~ 255 (1087)
+...++.|.|.+|+|||++|.++......+ .=+.++||+..... ..+.+.+- .++-. ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 344689999999999999999876544322 02467888876653 33333322 22110 000
Q ss_pred -----cccHHHHHHHHHHhhCC-CceEEEEecC
Q 047894 256 -----LKTLNEVQVQLKKAVDG-KRFLLVLDDV 282 (1087)
Q Consensus 256 -----~~~~~~~~~~l~~~l~~-kr~LlVlDdv 282 (1087)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23566666666666543 3468888876
No 460
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.76 E-value=0.54 Score=51.20 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
...++.++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 458999999999999999999987654
No 461
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.74 E-value=0.093 Score=52.03 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=23.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
..++.|+|.+|+||||+|+.+.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999988653
No 462
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.73 E-value=0.092 Score=53.09 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=24.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAV 219 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~ 219 (1087)
..+.+|.++||+|+||||..+.++.....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 45678899999999999999999876543
No 463
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.72 E-value=0.11 Score=57.38 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=57.8
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLK 267 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 267 (1087)
..++=+-|||..|.|||.|...+|+...++. -||. ....++-+.+.........+. .+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~----~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLP----QVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHH----HHH
Confidence 3456789999999999999999998765421 1331 223333333322111222222 344
Q ss_pred HhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc
Q 047894 268 KAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN 314 (1087)
Q Consensus 268 ~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~ 314 (1087)
+.+.++..||.+|.+.-.+..+=--+...|..--...-|||+|.+..
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRP 168 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCC
Confidence 55567777999998765554332222222222112345666665543
No 464
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.71 E-value=0.084 Score=50.02 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=18.7
Q ss_pred EEEEEecCCChHHHHHHHHh
Q 047894 195 VIPIVGMGGIGKTTLAREVY 214 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~ 214 (1087)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 47999999999999999987
No 465
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.70 E-value=0.069 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998753
No 466
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=5.4 Score=46.69 Aligned_cols=180 Identities=15% Similarity=0.091 Sum_probs=94.1
Q ss_pred ccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 167 EVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
++-|..+.++.+.+.+.-+.. .+-....-|.++|++|.|||-||.++..... .-+|+|-..
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--------~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--------LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--------eeEEEecCH----
Confidence 455667777777776654321 1112234578999999999999999987633 234666554
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCH-----------hhHHHhhccccc--CCCCcEE
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY-----------SLWVDLKAPFLA--AEPNSKM 306 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~~s~i 306 (1087)
+++.. .++. +.+.....+.++-..+++++++|..++-.. ....++...+.. +-.|--|
T Consensus 736 ElL~K---yIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 ELLSK---YIGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred HHHHH---Hhcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 22221 2222 223334445555567999999999855321 122333333322 2245555
Q ss_pred EE-EcCCccccccc-CCC---ceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhH
Q 047894 307 IV-TTRNSNVASTM-GPI---EHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALA 372 (1087)
Q Consensus 307 lv-Ttr~~~v~~~~-~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 372 (1087)
+- |||.+-+.... .+. +.+.=+.-++.+-.++|...+- ....+.+. ..+.++.+.+|.--|
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~-s~~~~~~v----dl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN-SLLKDTDV----DLECLAQKTDGFTGA 872 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhh-ccCCcccc----chHHHhhhcCCCchh
Confidence 54 55654332211 222 2333444556666677766542 11111111 224567777775433
No 467
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.63 E-value=0.83 Score=59.59 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.++-|.++|++|+|||.||++++.+..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 356788999999999999999998743
No 468
>PRK15453 phosphoribulokinase; Provisional
Probab=92.63 E-value=0.51 Score=49.41 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=43.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc--cHHHHHHHHHH--Hhhc--CC--CCcccHHHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF--DVLGISKALLE--SITS--AA--SDLKTLNEVQ 263 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~--~l~~--~~--~~~~~~~~~~ 263 (1087)
...+|+|.|.+|+||||+|+.+.+.....+ ...+.++...-. +..+.-..+.. .-+. .. .++.+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~---~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRREN---INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcC---CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 447999999999999999999886432111 123444443322 22222222211 1111 11 3456677777
Q ss_pred HHHHHhhCC
Q 047894 264 VQLKKAVDG 272 (1087)
Q Consensus 264 ~~l~~~l~~ 272 (1087)
+.++...++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777766543
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.59 E-value=0.072 Score=54.12 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+|+|.|.+|+||||+|+.+..-.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997653
No 470
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.59 E-value=0.059 Score=66.20 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=83.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc-------------ccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKA-------------VRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTL 259 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~-------------~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 259 (1087)
.+++.|+|+.+.||||+.+.+.--.- ..-+.|+. ++..++..-++..- ...+
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~--------------lStf 391 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQS--------------LSTF 391 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhc--------------hhHH
Confidence 46889999999999999988743210 00112322 22222222111110 1111
Q ss_pred HHHHHHHHHhhC--CCceEEEEecCCCC-CHhhHHHhh----cccccCCCCcEEEEEcCCcccccccCCCce---eeCCC
Q 047894 260 NEVQVQLKKAVD--GKRFLLVLDDVWNE-DYSLWVDLK----APFLAAEPNSKMIVTTRNSNVASTMGPIEH---YNLKS 329 (1087)
Q Consensus 260 ~~~~~~l~~~l~--~kr~LlVlDdv~~~-~~~~~~~l~----~~l~~~~~~s~ilvTtr~~~v~~~~~~~~~---~~l~~ 329 (1087)
..-...+...+. ..+-|+++|..... +..+...+. ..+. ..|+.+|+||...++......... ..+.
T Consensus 392 S~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~- 468 (782)
T PRK00409 392 SGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE- 468 (782)
T ss_pred HHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-
Confidence 111112222222 47789999998543 222222332 2222 347899999998776654322211 1111
Q ss_pred CChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCCCHHHHHHHHh
Q 047894 330 LSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTTRHDAWDDILE 393 (1087)
Q Consensus 330 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~w~~~~~ 393 (1087)
++. +......+ +..+.+. ...|-+|++++ |+|-.+..-|..+.......+..++.
T Consensus 469 ~d~-~~l~~~Yk--l~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~ 523 (782)
T PRK00409 469 FDE-ETLRPTYR--LLIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIA 523 (782)
T ss_pred Eec-CcCcEEEE--EeeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHH
Confidence 011 11110011 1111111 22345576666 88888888887776554445554444
No 471
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.57 E-value=0.087 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..|.++|++|+||||+|+.+....
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998864
No 472
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.55 E-value=0.27 Score=51.39 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=46.7
Q ss_pred EEEEEEecCCChHHHHH-HHHhccccccccCCCeE-EEEEeCCc-ccHHHHHHHHHHHhhcCC-------CCcccHHH--
Q 047894 194 VVIPIVGMGGIGKTTLA-REVYNDKAVRDSKFDVK-AWVCVSDV-FDVLGISKALLESITSAA-------SDLKTLNE-- 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~-- 261 (1087)
+-++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+... .+..++..++.+.-.... .+......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 46899999999999996 5565542 23444 55666554 345555555543211110 11111111
Q ss_pred ---HHHHHHHhh--CCCceEEEEecC
Q 047894 262 ---VQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 262 ---~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
..-.+.+++ +++.+|+|+||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112233333 589999999999
No 473
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.55 E-value=0.44 Score=53.61 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=49.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCC-------CCcccH-----HH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAA-------SDLKTL-----NE 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~-----~~ 261 (1087)
..++|+|..|+|||||++.++..... ...++...-.+.....+.....+..-+... .+.... ..
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999999886432 122333322333555555554444322111 111111 11
Q ss_pred HHHHHHHhh--CCCceEEEEecCC
Q 047894 262 VQVQLKKAV--DGKRFLLVLDDVW 283 (1087)
Q Consensus 262 ~~~~l~~~l--~~kr~LlVlDdv~ 283 (1087)
....+.+++ +++++|+++||+-
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchH
Confidence 222333444 5799999999993
No 474
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.55 E-value=1.2 Score=47.28 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+..+|.|+|.+|+|||||+..+.+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999988643
No 475
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.52 E-value=1.5 Score=44.75 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|..|.|||||++.+..-.
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcC
Confidence 589999999999999999998754
No 476
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.50 E-value=0.15 Score=47.99 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=27.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD 234 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 234 (1087)
.+|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~--g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR--GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc--CCceEEEEEccC
Confidence 378999999999999999999886533 455555555554
No 477
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.49 E-value=0.2 Score=49.77 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=30.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
.+++|-+..+..+.-..... .-+.++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 35788888888777666532 3589999999999999998743
No 478
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.49 E-value=0.67 Score=48.36 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|..|.|||||.+.++...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997754
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.42 E-value=0.12 Score=50.31 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
...+++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456999999999999999999987654
No 480
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.42 E-value=0.17 Score=54.56 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=33.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCC-----------CCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 167 EVFGREEDKAKILDMVLADTPRD-----------HPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~-----------~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
...|-..+...|.+.+....... ....-+++|+|.+|.||||+.+.+....
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 34555667777777664321100 0223589999999999999999886543
No 481
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.41 E-value=0.082 Score=50.87 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3689999999999999999875
No 482
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.41 E-value=0.78 Score=50.05 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|.|||||.+.+..-
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 483
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.40 E-value=0.27 Score=48.37 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=59.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEE--EEEeCCcccHHHHHHHHH--HH--hhcCCC-Cccc-------H
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKA--WVCVSDVFDVLGISKALL--ES--ITSAAS-DLKT-------L 259 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~--wv~~s~~~~~~~~~~~i~--~~--l~~~~~-~~~~-------~ 259 (1087)
..|.|+|..|-||||.|..+.-+.... .+.+.+ |+--.........+..+- .- .+.... ...+ .
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~--G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGH--GKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 578999999999999998776654322 122211 222221223333333210 00 000000 0001 1
Q ss_pred HHHHHHHHHhhCC-CceEEEEecCCCC---CHhhHHHhhcccccCCCCcEEEEEcCCc
Q 047894 260 NEVQVQLKKAVDG-KRFLLVLDDVWNE---DYSLWVDLKAPFLAAEPNSKMIVTTRNS 313 (1087)
Q Consensus 260 ~~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~~s~ilvTtr~~ 313 (1087)
.+.....++.+.. +-=++|||.+-.. ..-..+++...+.....+..||+|=|..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122334444544 4559999998221 1123445555554455677999999975
No 484
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.39 E-value=0.64 Score=48.96 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=37.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLES 248 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 248 (1087)
...++.|.|.+|+|||++|.+++.+.... +=..++|++.... ..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--~g~~vly~s~E~~--~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK--QGKPVLFFSLEMS--KEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCceEEEeCCCC--HHHHHHHHHHH
Confidence 34689999999999999999987765433 1245678877664 44556665543
No 485
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.39 E-value=0.3 Score=57.55 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=35.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..++|....+.++.+.+..-... -..|.|+|..|+||+++|+.+...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~----~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAML----DAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCC----CCCEEEECCCCccHHHHHHHHHHh
Confidence 35889888888877766533221 134789999999999999998654
No 486
>PHA02774 E1; Provisional
Probab=92.36 E-value=0.42 Score=54.98 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeC
Q 047894 175 KAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVS 233 (1087)
Q Consensus 175 ~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 233 (1087)
+..+..++... +.-..+.|+|++|+|||.+|..+.+-.. -....||+..
T Consensus 421 l~~lk~~l~~~-----PKknciv~~GPP~TGKS~fa~sL~~~L~-----G~vi~fvN~~ 469 (613)
T PHA02774 421 LTALKDFLKGI-----PKKNCLVIYGPPDTGKSMFCMSLIKFLK-----GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEEECc
Confidence 44555555322 3346899999999999999999987632 2345677653
No 487
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.32 E-value=0.099 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.712 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
++++|+|+.|+||||||+.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999885
No 488
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.31 E-value=0.096 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998753
No 489
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.31 E-value=0.47 Score=55.45 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=34.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
....++.|.|.+|+|||||+.++...... .-..+++++.... ..++...
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s~eEs--~~~i~~~ 309 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACA---NKERAILFAYEES--RAQLLRN 309 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCC--HHHHHHH
Confidence 44579999999999999999999876432 2245677765543 4444444
No 490
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.30 E-value=0.1 Score=47.74 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=19.9
Q ss_pred EEEEecCCChHHHHHHHHhcccc
Q 047894 196 IPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999987643
No 491
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.30 E-value=0.5 Score=53.44 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=52.9
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhhcCC-------CCcccHHH----
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALLESITSAA-------SDLKTLNE---- 261 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~---- 261 (1087)
.-++|.|.+|+|||||+.++....... +-+.++++-+... ..+.++..++...-.... .+......
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~--~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE--HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 468999999999999999987664322 2245677776544 345555555554311110 11111111
Q ss_pred -HHHHHHHhh---CCCceEEEEecC
Q 047894 262 -VQVQLKKAV---DGKRFLLVLDDV 282 (1087)
Q Consensus 262 -~~~~l~~~l---~~kr~LlVlDdv 282 (1087)
....+.+++ +++++|+++||+
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 222355555 679999999999
No 492
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.28 E-value=0.75 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|..|+|||||++.+....
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 589999999999999999987653
No 493
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=0.018 Score=58.20 Aligned_cols=81 Identities=31% Similarity=0.277 Sum_probs=66.6
Q ss_pred ccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCccccc--ccccCCCCcEEEecCCCCCcccCcc-----cC
Q 047894 573 LLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPE--STCKLLNLEILILRNCSRLIKLPPK-----MR 645 (1087)
Q Consensus 573 ~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~-----i~ 645 (1087)
++.+++.|.||.|+-|.|+.+ ..+..+..|+.|-|+.|.|..+-+ -+.+|++|++|=|..|.....-+.. +.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 478899999999999999988 568899999999999999987754 5789999999999887655544432 55
Q ss_pred CCCCcCEEe
Q 047894 646 NLINLNHLD 654 (1087)
Q Consensus 646 ~L~~L~~L~ 654 (1087)
.|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 678888886
No 494
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.28 E-value=0.41 Score=52.44 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=45.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLESITSAASDLKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (1087)
.++|++||+.||||||....++..+.... .-..+..|+..... ...+=++.-++-++.+.....+..++...+.. ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-LR 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-hh
Confidence 58999999999999765444433332111 23456677765432 11121223333334333334455555544443 23
Q ss_pred CCceEEEEecCCC
Q 047894 272 GKRFLLVLDDVWN 284 (1087)
Q Consensus 272 ~kr~LlVlDdv~~ 284 (1087)
+. -+|.+|-+..
T Consensus 281 ~~-d~ILVDTaGr 292 (407)
T COG1419 281 DC-DVILVDTAGR 292 (407)
T ss_pred cC-CEEEEeCCCC
Confidence 33 4666676644
No 495
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=0.38 Score=52.25 Aligned_cols=81 Identities=27% Similarity=0.289 Sum_probs=50.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCC-----cccHHHHHHHHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASD-----LKTLNEVQVQLK 267 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 267 (1087)
..+|.|-|-+|+|||||..++..+...+ . .+++|+..... .++ +--++.++....+ ..++++....+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~--~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKR--G--KVLYVSGEESL--QQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhc--C--cEEEEeCCcCH--HHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3689999999999999999999876532 1 56777665543 222 1223444432221 234444444443
Q ss_pred HhhCCCceEEEEecCC
Q 047894 268 KAVDGKRFLLVLDDVW 283 (1087)
Q Consensus 268 ~~l~~kr~LlVlDdv~ 283 (1087)
+.++-++|+|-+.
T Consensus 166 ---~~~p~lvVIDSIQ 178 (456)
T COG1066 166 ---QEKPDLVVIDSIQ 178 (456)
T ss_pred ---hcCCCEEEEeccc
Confidence 3678899999883
No 496
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.26 E-value=0.15 Score=63.85 Aligned_cols=139 Identities=18% Similarity=0.183 Sum_probs=74.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccc-cCCCeEEEEEeCCccc----HH--HHHHHHHHHhhcCCCCcccHHHHHHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRD-SKFDVKAWVCVSDVFD----VL--GISKALLESITSAASDLKTLNEVQVQL 266 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~----~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l 266 (1087)
.-+.|+|.+|.||||..+.+.-....+. ..=+..+++....... .. .+..-+...+..... ..+.....
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhHHH
Confidence 4689999999999999998765432211 1223445555442111 11 122222222222111 11112222
Q ss_pred HHhhCCCceEEEEecCCCCCHhhHHHh---hcccccCCCCcEEEEEcCCcccccccCCCceeeCCCCChHhHH
Q 047894 267 KKAVDGKRFLLVLDDVWNEDYSLWVDL---KAPFLAAEPNSKMIVTTRNSNVASTMGPIEHYNLKSLSDDDCW 336 (1087)
Q Consensus 267 ~~~l~~kr~LlVlDdv~~~~~~~~~~l---~~~l~~~~~~s~ilvTtr~~~v~~~~~~~~~~~l~~L~~~~~~ 336 (1087)
.+.++..++++++|.++......-... ...+.+.-+.++||+|+|....-........+.+..+.++.-.
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 567889999999999855432111111 2233445578999999997655443333345566666655444
No 497
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.25 E-value=0.13 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999875
No 498
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.25 E-value=0.32 Score=51.79 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=35.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV 235 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 235 (1087)
+..+++.|+|.+|+|||++|.++..... .....++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~---~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA---REGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH---hcCCcEEEEEecCC
Confidence 4558999999999999999999987654 25678999998875
No 499
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.24 E-value=0.96 Score=47.10 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|..|.|||||.+.+..-.
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999999987643
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.23 E-value=1 Score=46.78 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=31.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV 235 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 235 (1087)
+...++.|.|.+|+|||++|.+++..... .=..++|++....
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~---~g~~~~y~s~e~~ 55 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLK---NGEKAMYISLEER 55 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCC
Confidence 34578999999999999999988765321 2245778887664
Done!