Query 047894
Match_columns 1087
No_of_seqs 530 out of 4262
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 06:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-47 6.5E-52 452.6 25.7 317 169-507 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 4.6E-38 1.6E-42 371.2 19.7 285 167-499 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 5.6E-36 1.9E-40 396.8 31.2 313 162-505 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-33 5.4E-38 340.0 27.4 306 164-503 122-450 (591)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-32 3.9E-37 334.9 29.4 496 517-1069 28-559 (606)
6 3rgz_A Protein brassinosteroid 100.0 2.4E-33 8.1E-38 348.1 20.4 481 572-1087 94-688 (768)
7 3rgz_A Protein brassinosteroid 100.0 3.2E-33 1.1E-37 346.9 18.6 301 757-1073 340-722 (768)
8 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-31 9.6E-36 327.1 33.2 522 519-1087 23-592 (680)
9 3t6q_A CD180 antigen; protein- 100.0 7.3E-31 2.5E-35 318.9 27.6 502 516-1067 28-559 (606)
10 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-30 1.7E-34 316.1 31.4 506 521-1068 49-622 (680)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-29 9.1E-34 315.1 36.5 511 519-1086 22-554 (844)
12 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-30 2E-34 310.9 23.9 463 521-1048 56-561 (606)
13 2z63_A TOLL-like receptor 4, v 100.0 1.6E-29 5.3E-34 305.2 26.2 489 518-1070 25-533 (570)
14 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-28 2E-32 303.0 41.0 490 521-1069 48-561 (844)
15 3t6q_A CD180 antigen; protein- 100.0 4E-29 1.4E-33 303.6 29.3 472 571-1087 50-555 (606)
16 4eco_A Uncharacterized protein 100.0 5.4E-29 1.8E-33 301.4 20.2 363 610-1043 192-598 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 5.3E-29 1.8E-33 305.2 19.5 364 611-1043 435-838 (876)
18 2z81_A CD282 antigen, TOLL-lik 100.0 9.2E-28 3.1E-32 288.0 26.2 459 578-1087 26-505 (549)
19 2z63_A TOLL-like receptor 4, v 100.0 4.6E-28 1.6E-32 292.4 22.9 451 546-1087 28-526 (570)
20 2z7x_B TOLL-like receptor 1, v 100.0 2E-27 6.9E-32 282.7 25.3 429 578-1087 21-476 (520)
21 4eco_A Uncharacterized protein 100.0 4.9E-28 1.7E-32 293.0 18.6 363 588-1023 193-602 (636)
22 4ecn_A Leucine-rich repeat pro 99.9 4.5E-27 1.5E-31 288.1 25.0 366 588-1028 435-847 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-26 4.7E-31 277.7 26.6 153 922-1087 350-505 (562)
24 2z81_A CD282 antigen, TOLL-lik 99.9 9.2E-27 3.2E-31 279.3 24.1 458 546-1069 26-511 (549)
25 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-26 6.2E-31 274.5 22.2 443 546-1067 21-480 (520)
26 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-25 5.2E-30 274.5 28.2 135 921-1066 441-578 (635)
27 1jl5_A Outer protein YOPM; leu 99.9 8.6E-25 2.9E-29 252.4 23.4 392 577-1075 10-436 (454)
28 1o6v_A Internalin A; bacterial 99.9 1.5E-24 5.2E-29 253.2 25.5 343 577-1069 45-389 (466)
29 3bz5_A Internalin-J, INLJ; leu 99.9 3.7E-25 1.3E-29 255.6 17.6 316 574-1022 38-353 (457)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-24 4.4E-29 260.5 21.8 437 546-1066 52-508 (562)
31 3v47_A TOLL-like receptor 5B a 99.9 1.7E-24 5.8E-29 253.0 21.1 136 925-1072 275-412 (455)
32 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-23 3.6E-28 258.1 24.4 475 579-1087 53-575 (635)
33 1o6v_A Internalin A; bacterial 99.9 1.9E-23 6.3E-28 244.0 24.5 341 545-1042 45-385 (466)
34 1jl5_A Outer protein YOPM; leu 99.9 1E-23 3.5E-28 243.4 21.6 338 594-1042 5-367 (454)
35 3v47_A TOLL-like receptor 5B a 99.9 1.9E-23 6.4E-28 244.1 20.5 369 578-1049 30-412 (455)
36 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-23 8.2E-28 240.5 18.3 367 542-1040 38-407 (457)
37 4fmz_A Internalin; leucine ric 99.9 5.5E-23 1.9E-27 230.6 19.0 97 575-677 41-137 (347)
38 2id5_A Lingo-1, leucine rich r 99.9 1.8E-21 6.2E-26 228.5 25.8 312 581-1043 14-331 (477)
39 3o6n_A APL1; leucine-rich repe 99.9 2E-21 6.9E-26 221.4 20.6 101 576-677 43-146 (390)
40 3oja_B Anopheles plasmodium-re 99.9 3.3E-21 1.1E-25 232.0 21.1 304 577-1043 50-356 (597)
41 2id5_A Lingo-1, leucine rich r 99.9 8.1E-21 2.8E-25 222.9 22.2 297 578-1023 32-335 (477)
42 4fmz_A Internalin; leucine ric 99.9 5.7E-21 1.9E-25 214.2 19.2 122 542-678 40-161 (347)
43 3o6n_A APL1; leucine-rich repe 99.8 2E-20 6.8E-25 213.2 19.0 124 544-677 43-170 (390)
44 3oja_B Anopheles plasmodium-re 99.8 2.4E-20 8.3E-25 224.4 19.1 307 544-1023 49-360 (597)
45 1xku_A Decorin; proteoglycan, 99.8 1.5E-19 5.1E-24 200.7 21.3 87 578-667 31-118 (330)
46 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-19 3.9E-24 201.8 18.1 286 578-1043 33-331 (332)
47 1ogq_A PGIP-2, polygalacturona 99.8 4.2E-20 1.4E-24 202.8 5.5 95 578-672 50-149 (313)
48 4fcg_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 187.9 18.2 93 576-669 79-171 (328)
49 2ft3_A Biglycan; proteoglycan, 99.8 1E-17 3.6E-22 185.9 20.3 280 761-1087 34-328 (332)
50 1xku_A Decorin; proteoglycan, 99.8 1E-17 3.5E-22 185.9 18.9 281 761-1087 32-327 (330)
51 3g06_A SSPH2 (leucine-rich rep 99.8 5.2E-17 1.8E-21 192.7 24.9 264 578-1027 40-303 (622)
52 2z80_A TOLL-like receptor 2, v 99.7 7E-18 2.4E-22 189.1 16.0 86 577-666 30-117 (353)
53 3ogk_B Coronatine-insensitive 99.7 4.9E-20 1.7E-24 223.1 -4.8 203 574-816 108-326 (592)
54 4fcg_A Uncharacterized protein 99.7 1.8E-17 6.2E-22 182.8 14.9 200 573-845 99-308 (328)
55 3ogk_B Coronatine-insensitive 99.7 3.9E-19 1.3E-23 215.2 -0.2 132 924-1064 435-572 (592)
56 3zyi_A Leucine-rich repeat-con 99.7 3.1E-16 1.1E-20 182.0 22.7 85 579-666 55-140 (452)
57 3zyj_A Leucine-rich repeat-con 99.7 3.6E-16 1.2E-20 180.8 20.1 237 764-1066 47-290 (440)
58 3zyj_A Leucine-rich repeat-con 99.7 4.5E-16 1.5E-20 180.0 20.8 84 579-666 44-129 (440)
59 1ogq_A PGIP-2, polygalacturona 99.7 1E-17 3.5E-22 183.7 6.4 250 786-1072 51-308 (313)
60 3zyi_A Leucine-rich repeat-con 99.7 3E-16 1E-20 182.1 18.7 238 764-1042 58-300 (452)
61 1z7x_W Ribonuclease inhibitor; 99.7 4.9E-20 1.7E-24 215.6 -14.8 58 1007-1067 369-439 (461)
62 3g06_A SSPH2 (leucine-rich rep 99.7 3E-15 1E-19 177.7 25.3 251 762-1087 42-292 (622)
63 2z66_A Variable lymphocyte rec 99.7 1.9E-16 6.7E-21 173.5 13.9 93 581-677 10-106 (306)
64 2p1m_B Transport inhibitor res 99.7 1.1E-18 3.7E-23 211.4 -6.6 110 924-1044 396-518 (594)
65 1z7x_W Ribonuclease inhibitor; 99.6 5E-19 1.7E-23 206.9 -13.7 88 572-659 22-124 (461)
66 2z80_A TOLL-like receptor 2, v 99.6 3.4E-15 1.2E-19 167.1 15.5 259 768-1068 39-314 (353)
67 2qen_A Walker-type ATPase; unk 99.6 1.3E-14 4.3E-19 162.7 19.8 291 164-499 10-349 (350)
68 2z66_A Variable lymphocyte rec 99.6 3E-15 1E-19 164.0 14.0 241 764-1066 11-259 (306)
69 1wwl_A Monocyte differentiatio 99.6 2.7E-16 9.2E-21 172.5 4.4 83 574-659 39-132 (312)
70 1w5s_A Origin recognition comp 99.6 1E-14 3.5E-19 167.4 17.5 313 166-494 22-387 (412)
71 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-15 5.5E-20 166.7 7.8 82 572-659 28-110 (317)
72 1ozn_A Reticulon 4 receptor; N 99.6 1.6E-14 5.4E-19 156.3 15.4 177 867-1066 55-236 (285)
73 3oja_A Leucine-rich immune mol 99.6 2.9E-15 9.9E-20 174.5 9.9 217 784-1045 33-250 (487)
74 3o53_A Protein LRIM1, AGAP0063 99.6 4.1E-15 1.4E-19 163.5 9.4 151 868-1044 99-249 (317)
75 2fna_A Conserved hypothetical 99.6 7.3E-14 2.5E-18 156.9 19.5 290 164-498 11-356 (357)
76 2o6q_A Variable lymphocyte rec 99.5 6.6E-14 2.2E-18 149.9 17.3 176 867-1066 36-216 (270)
77 1ozn_A Reticulon 4 receptor; N 99.5 7.3E-14 2.5E-18 151.1 17.3 249 765-1075 16-268 (285)
78 1wwl_A Monocyte differentiatio 99.5 2.9E-14 9.9E-19 156.2 12.6 202 576-818 93-306 (312)
79 1p9a_G Platelet glycoprotein I 99.5 1.2E-13 4E-18 149.1 16.9 191 867-1086 9-202 (290)
80 3oja_A Leucine-rich immune mol 99.5 2.7E-15 9.2E-20 174.8 2.4 234 805-1084 31-267 (487)
81 2xwt_C Thyrotropin receptor; s 99.5 2.6E-13 8.8E-18 142.4 15.0 194 866-1087 29-234 (239)
82 2xwt_C Thyrotropin receptor; s 99.5 2.3E-13 7.8E-18 142.9 14.0 199 838-1067 31-238 (239)
83 4ay9_X Follicle-stimulating ho 99.5 1.2E-12 4E-17 145.9 20.2 57 764-824 13-70 (350)
84 1h6u_A Internalin H; cell adhe 99.5 1.6E-13 5.5E-18 149.7 12.8 189 576-818 39-227 (308)
85 2z62_A TOLL-like receptor 4, v 99.5 1.5E-13 5.2E-18 147.8 12.1 153 921-1086 72-231 (276)
86 2p1m_B Transport inhibitor res 99.5 9.7E-16 3.3E-20 185.4 -5.9 128 544-677 128-270 (594)
87 2z62_A TOLL-like receptor 4, v 99.4 3.4E-13 1.2E-17 145.1 13.0 203 578-819 28-235 (276)
88 3rfs_A Internalin B, repeat mo 99.4 1.7E-13 5.8E-18 146.8 9.6 142 921-1079 105-246 (272)
89 1p9a_G Platelet glycoprotein I 99.4 8.1E-13 2.8E-17 142.5 14.7 79 579-659 32-111 (290)
90 2o6q_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 140.6 15.2 154 866-1043 59-216 (270)
91 2ast_B S-phase kinase-associat 99.4 2.2E-14 7.5E-19 159.6 0.4 204 578-848 70-282 (336)
92 4glp_A Monocyte differentiatio 99.4 1.4E-12 4.8E-17 142.7 13.4 208 784-1067 90-306 (310)
93 4glp_A Monocyte differentiatio 99.4 2E-12 6.9E-17 141.4 14.5 203 577-818 90-304 (310)
94 3rfs_A Internalin B, repeat mo 99.4 4E-12 1.4E-16 136.0 15.3 180 864-1070 37-220 (272)
95 3qfl_A MLA10; coiled-coil, (CC 99.4 1.9E-12 6.4E-17 115.4 10.0 58 25-82 24-83 (115)
96 1h6u_A Internalin H; cell adhe 99.4 9.4E-13 3.2E-17 143.6 9.7 192 837-1072 40-233 (308)
97 3m19_A Variable lymphocyte rec 99.4 8.2E-12 2.8E-16 131.9 16.6 174 869-1067 15-191 (251)
98 2qby_B CDC6 homolog 3, cell di 99.4 2.2E-11 7.6E-16 138.0 20.8 296 166-481 20-340 (384)
99 4ezg_A Putative uncharacterize 99.3 7.3E-13 2.5E-17 134.1 6.6 102 983-1086 87-188 (197)
100 1fnn_A CDC6P, cell division co 99.3 9.9E-11 3.4E-15 132.9 24.9 297 166-481 17-352 (389)
101 1h6t_A Internalin B; cell adhe 99.3 6.1E-12 2.1E-16 135.8 11.4 99 575-679 43-141 (291)
102 2v1u_A Cell division control p 99.3 9.9E-11 3.4E-15 132.8 22.1 296 166-481 19-352 (387)
103 4ay9_X Follicle-stimulating ho 99.3 3E-11 1E-15 134.5 15.3 197 863-1084 25-231 (350)
104 2ca6_A RAN GTPase-activating p 99.3 2.5E-13 8.4E-18 154.1 -1.9 88 572-659 26-133 (386)
105 2ast_B S-phase kinase-associat 99.3 1.7E-12 5.9E-17 144.2 4.2 203 546-818 70-282 (336)
106 2ca6_A RAN GTPase-activating p 99.2 2.7E-13 9.4E-18 153.7 -2.9 244 540-818 26-313 (386)
107 2o6s_A Variable lymphocyte rec 99.2 1.3E-11 4.5E-16 126.2 9.6 142 921-1079 48-189 (208)
108 3m19_A Variable lymphocyte rec 99.2 2.8E-11 9.5E-16 127.8 12.3 157 865-1044 32-191 (251)
109 1m9s_A Internalin B; cell inva 99.2 1.5E-11 5.2E-16 145.8 11.1 99 575-679 40-138 (605)
110 3cvr_A Invasion plasmid antige 99.2 5.6E-11 1.9E-15 139.1 14.3 91 984-1086 140-237 (571)
111 4ezg_A Putative uncharacterize 99.2 2.4E-11 8.1E-16 122.9 9.7 100 576-677 42-141 (197)
112 1h6t_A Internalin B; cell adhe 99.2 9.7E-12 3.3E-16 134.2 6.5 125 922-1066 87-211 (291)
113 1njg_A DNA polymerase III subu 99.2 3.2E-10 1.1E-14 119.6 17.1 198 166-380 23-231 (250)
114 1m9s_A Internalin B; cell inva 99.2 1.4E-11 4.7E-16 146.2 7.0 166 837-1043 42-208 (605)
115 3cvr_A Invasion plasmid antige 99.2 1.4E-10 4.7E-15 135.9 15.3 175 579-820 60-242 (571)
116 1xeu_A Internalin C; cellular 99.2 1.8E-11 6.3E-16 129.8 6.7 78 578-659 19-96 (263)
117 2qby_A CDC6 homolog 1, cell di 99.2 1.4E-10 4.9E-15 131.5 14.4 297 165-480 19-348 (386)
118 2v9t_B SLIT homolog 2 protein 99.2 1.2E-10 4.2E-15 119.7 12.3 148 872-1043 15-163 (220)
119 2v70_A SLIT-2, SLIT homolog 2 99.2 1.3E-10 4.5E-15 119.5 11.9 149 871-1043 14-164 (220)
120 2ell_A Acidic leucine-rich nuc 99.1 9.2E-11 3.1E-15 115.2 10.1 128 546-683 24-158 (168)
121 2v70_A SLIT-2, SLIT homolog 2 99.1 2.5E-10 8.5E-15 117.4 11.6 130 926-1066 33-164 (220)
122 2v9t_B SLIT homolog 2 protein 99.1 4E-10 1.4E-14 115.9 12.6 131 925-1067 32-164 (220)
123 3e6j_A Variable lymphocyte rec 99.1 4.1E-10 1.4E-14 116.7 12.6 131 925-1068 40-172 (229)
124 2je0_A Acidic leucine-rich nuc 99.1 1E-10 3.5E-15 112.2 6.9 124 546-679 17-147 (149)
125 2xot_A Amphoterin-induced prot 99.1 1.1E-10 3.8E-15 130.4 8.1 172 871-1067 21-201 (361)
126 2chg_A Replication factor C sm 99.1 2.2E-09 7.5E-14 111.2 17.3 186 166-377 17-204 (226)
127 3goz_A Leucine-rich repeat-con 99.1 5.2E-11 1.8E-15 133.4 4.1 86 574-659 18-120 (362)
128 2ell_A Acidic leucine-rich nuc 99.1 1.8E-10 6.1E-15 113.1 7.3 104 575-680 21-128 (168)
129 1a9n_A U2A', U2A'; complex (nu 99.0 2.5E-10 8.7E-15 112.9 8.0 129 542-682 15-150 (176)
130 1xeu_A Internalin C; cellular 99.0 3.9E-10 1.3E-14 119.5 9.9 99 574-679 37-135 (263)
131 4b8c_D Glucose-repressible alc 99.0 2.2E-10 7.5E-15 139.7 8.9 111 569-681 215-325 (727)
132 3e6j_A Variable lymphocyte rec 99.0 7.2E-10 2.5E-14 114.8 10.8 151 870-1045 21-172 (229)
133 2je0_A Acidic leucine-rich nuc 99.0 1.3E-10 4.6E-15 111.4 4.7 104 576-681 15-122 (149)
134 1hqc_A RUVB; extended AAA-ATPa 99.0 1.6E-09 5.6E-14 119.2 14.0 274 166-479 12-324 (324)
135 2o6s_A Variable lymphocyte rec 99.0 2E-09 6.8E-14 109.8 13.5 133 925-1069 28-162 (208)
136 3goz_A Leucine-rich repeat-con 99.0 2.6E-11 9E-16 135.8 -1.4 109 546-659 22-149 (362)
137 2wfh_A SLIT homolog 2 protein 98.9 1.7E-09 5.9E-14 108.4 9.8 101 578-680 31-134 (193)
138 1dce_A Protein (RAB geranylger 98.9 1E-09 3.4E-14 129.4 9.0 95 580-678 443-539 (567)
139 1a9n_A U2A', U2A'; complex (nu 98.9 6.1E-10 2.1E-14 110.1 6.0 103 574-680 15-121 (176)
140 3sb4_A Hypothetical leucine ri 98.9 7.8E-09 2.7E-13 113.8 13.8 225 837-1086 48-328 (329)
141 1dce_A Protein (RAB geranylger 98.9 2.4E-09 8.3E-14 126.1 10.1 101 574-677 459-565 (567)
142 1w8a_A SLIT protein; signaling 98.9 3.7E-09 1.3E-13 106.0 9.5 101 579-679 30-133 (192)
143 2r9u_A Variable lymphocyte rec 98.9 4E-09 1.4E-13 103.6 8.8 94 581-678 15-111 (174)
144 2wfh_A SLIT homolog 2 protein 98.8 9.1E-09 3.1E-13 103.1 10.9 97 581-681 13-111 (193)
145 2xot_A Amphoterin-induced prot 98.8 9.3E-09 3.2E-13 114.7 11.5 149 925-1086 39-196 (361)
146 1sxj_B Activator 1 37 kDa subu 98.8 1.9E-08 6.4E-13 110.7 13.8 186 166-377 21-210 (323)
147 4b8c_D Glucose-repressible alc 98.8 2.1E-09 7.3E-14 131.0 6.6 118 541-668 219-336 (727)
148 1w8a_A SLIT protein; signaling 98.8 9.4E-09 3.2E-13 103.0 9.9 98 581-681 11-111 (192)
149 3g39_A Variable lymphocyte rec 98.8 1E-08 3.5E-13 100.4 9.3 97 580-680 11-110 (170)
150 2r9u_A Variable lymphocyte rec 98.8 1.3E-08 4.4E-13 99.9 9.0 89 578-668 33-124 (174)
151 2o6r_A Variable lymphocyte rec 98.7 3.8E-08 1.3E-12 97.3 10.9 106 926-1042 29-134 (177)
152 2o6r_A Variable lymphocyte rec 98.7 2.7E-08 9.1E-13 98.4 9.8 101 578-680 28-132 (177)
153 3sb4_A Hypothetical leucine ri 98.7 2.6E-08 9E-13 109.6 10.2 101 948-1061 224-327 (329)
154 1ds9_A Outer arm dynein; leuci 98.7 8.7E-11 3E-15 118.8 -9.4 103 573-679 43-147 (198)
155 1iqp_A RFCS; clamp loader, ext 98.7 1.3E-07 4.6E-12 104.0 14.4 187 166-378 25-213 (327)
156 3te6_A Regulatory protein SIR3 98.6 2.1E-07 7.2E-12 99.1 14.3 174 167-345 21-213 (318)
157 1ds9_A Outer arm dynein; leuci 98.6 8.2E-10 2.8E-14 111.6 -4.5 127 541-679 43-181 (198)
158 3g39_A Variable lymphocyte rec 98.6 6.8E-08 2.3E-12 94.4 9.0 81 578-659 30-113 (170)
159 4fdw_A Leucine rich hypothetic 98.6 1.1E-06 3.8E-11 98.6 19.9 80 1002-1085 294-376 (401)
160 1jr3_A DNA polymerase III subu 98.5 8.9E-07 3E-11 99.4 15.8 196 166-378 16-222 (373)
161 2ifg_A High affinity nerve gro 98.4 3E-07 1E-11 102.0 8.4 81 584-667 14-98 (347)
162 2chq_A Replication factor C sm 98.4 1.5E-06 5.2E-11 95.1 13.7 182 166-377 17-204 (319)
163 4fdw_A Leucine rich hypothetic 98.4 1E-05 3.5E-10 90.7 20.1 167 868-1065 203-380 (401)
164 3pfi_A Holliday junction ATP-d 98.4 6.9E-06 2.3E-10 90.5 18.3 179 165-377 28-227 (338)
165 4fs7_A Uncharacterized protein 98.3 1.9E-05 6.5E-10 89.0 20.4 58 981-1041 317-375 (394)
166 2ifg_A High affinity nerve gro 98.3 9.7E-07 3.3E-11 97.9 8.8 88 570-659 24-114 (347)
167 3bos_A Putative DNA replicatio 98.2 1.7E-06 5.8E-11 90.3 8.7 175 166-378 28-218 (242)
168 1jbk_A CLPB protein; beta barr 98.2 1.7E-06 5.9E-11 86.7 8.1 46 166-217 22-67 (195)
169 1sxj_D Activator 1 41 kDa subu 98.2 8.4E-06 2.9E-10 90.6 13.7 195 166-377 37-235 (353)
170 3pvs_A Replication-associated 98.1 2.8E-05 9.7E-10 87.9 16.4 180 166-377 26-215 (447)
171 2z4s_A Chromosomal replication 98.1 1.5E-05 5.1E-10 90.4 13.5 164 193-376 130-305 (440)
172 4fs7_A Uncharacterized protein 98.1 0.00021 7.1E-09 80.4 22.7 78 1000-1083 312-392 (394)
173 3h4m_A Proteasome-activating n 98.1 3.2E-05 1.1E-09 82.8 15.2 186 165-376 16-230 (285)
174 3u61_B DNA polymerase accessor 98.1 2.6E-05 9.1E-10 85.2 14.8 179 166-375 26-214 (324)
175 1sxj_A Activator 1 95 kDa subu 98.1 1.5E-05 5.2E-10 92.7 13.3 197 166-377 39-253 (516)
176 3uk6_A RUVB-like 2; hexameric 98.1 1.2E-05 4E-10 89.9 11.8 199 166-377 44-303 (368)
177 1sxj_E Activator 1 40 kDa subu 98.1 2.3E-05 7.8E-10 87.0 13.7 197 166-378 14-238 (354)
178 1d2n_A N-ethylmaleimide-sensit 98.0 4.8E-05 1.6E-09 80.7 14.6 195 167-393 34-259 (272)
179 1a5t_A Delta prime, HOLB; zinc 98.0 7.3E-05 2.5E-09 81.7 16.2 174 171-377 7-205 (334)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.0 6.9E-05 2.4E-09 79.0 15.5 187 166-376 6-221 (262)
181 3syl_A Protein CBBX; photosynt 98.0 3.9E-05 1.3E-09 83.2 12.8 159 167-344 32-218 (309)
182 3n70_A Transport activator; si 97.9 2.2E-05 7.7E-10 73.9 7.6 114 167-312 2-115 (145)
183 3eie_A Vacuolar protein sortin 97.9 0.00024 8.1E-09 77.2 16.4 186 166-378 18-229 (322)
184 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00056 1.9E-08 74.0 19.2 189 166-378 12-224 (322)
185 3ec2_A DNA replication protein 97.8 4.2E-05 1.4E-09 75.3 8.8 121 171-312 19-142 (180)
186 1l8q_A Chromosomal replication 97.8 0.00019 6.5E-09 78.2 14.5 170 174-372 22-203 (324)
187 2qp9_X Vacuolar protein sortin 97.8 0.00032 1.1E-08 77.2 15.8 188 166-378 51-262 (355)
188 1sxj_C Activator 1 40 kDa subu 97.8 0.00018 6.3E-09 78.9 13.8 184 166-376 25-211 (340)
189 3d8b_A Fidgetin-like protein 1 97.8 0.00037 1.3E-08 76.8 16.2 187 166-378 84-296 (357)
190 2p65_A Hypothetical protein PF 97.7 3.1E-05 1.1E-09 76.8 6.6 46 166-217 22-67 (187)
191 3b9p_A CG5977-PA, isoform A; A 97.7 0.0011 3.8E-08 71.1 18.3 186 166-377 21-233 (297)
192 3e4g_A ATP synthase subunit S, 97.7 6.7E-06 2.3E-10 78.7 0.3 64 1006-1069 83-153 (176)
193 3un9_A NLR family member X1; l 97.6 4.6E-06 1.6E-10 92.6 -1.4 15 645-659 180-194 (372)
194 1in4_A RUVB, holliday junction 97.6 0.00086 2.9E-08 73.1 16.6 178 166-377 25-223 (334)
195 4gt6_A Cell surface protein; l 97.6 0.0011 3.7E-08 74.5 16.8 57 982-1041 309-366 (394)
196 3pxg_A Negative regulator of g 97.6 0.0002 6.9E-09 81.9 10.7 148 166-343 180-338 (468)
197 2gno_A DNA polymerase III, gam 97.6 0.00038 1.3E-08 74.3 12.0 149 170-343 1-152 (305)
198 3e4g_A ATP synthase subunit S, 97.5 2.8E-05 9.5E-10 74.4 2.5 92 926-1047 62-154 (176)
199 3co5_A Putative two-component 97.5 7.7E-05 2.6E-09 70.0 5.5 110 167-312 5-115 (143)
200 3cf0_A Transitional endoplasmi 97.5 0.00099 3.4E-08 71.4 14.9 181 166-372 15-223 (301)
201 2zan_A Vacuolar protein sortin 97.5 0.00081 2.8E-08 76.3 14.6 189 166-378 134-346 (444)
202 3vfd_A Spastin; ATPase, microt 97.5 0.0019 6.6E-08 72.1 17.6 188 165-377 114-326 (389)
203 1qvr_A CLPB protein; coiled co 97.5 0.00014 4.9E-09 90.1 8.6 155 166-342 170-344 (854)
204 3hu3_A Transitional endoplasmi 97.5 0.00078 2.7E-08 76.9 13.9 185 166-376 204-414 (489)
205 2ra8_A Uncharacterized protein 97.5 2.7E-05 9.4E-10 85.5 1.6 56 757-816 169-227 (362)
206 4gt6_A Cell surface protein; l 97.5 0.0067 2.3E-07 68.0 21.3 99 980-1086 284-385 (394)
207 2w58_A DNAI, primosome compone 97.5 0.00015 5E-09 72.9 6.8 119 173-312 36-158 (202)
208 3rw6_A Nuclear RNA export fact 97.4 8E-05 2.7E-09 77.2 4.5 59 576-635 168-231 (267)
209 2ra8_A Uncharacterized protein 97.4 0.00012 4E-09 80.5 5.5 167 888-1066 137-318 (362)
210 4b4t_J 26S protease regulatory 97.3 0.003 1E-07 68.9 15.8 179 166-370 148-354 (405)
211 4b4t_K 26S protease regulatory 97.3 0.0013 4.6E-08 72.8 13.2 53 166-218 172-231 (428)
212 3un9_A NLR family member X1; l 97.3 4.7E-05 1.6E-09 84.4 1.1 84 576-659 153-250 (372)
213 2c9o_A RUVB-like 1; hexameric 97.3 0.00063 2.1E-08 77.7 10.5 98 275-377 297-410 (456)
214 3rw6_A Nuclear RNA export fact 97.3 3.8E-05 1.3E-09 79.6 0.2 103 577-681 140-260 (267)
215 1ofh_A ATP-dependent HSL prote 97.3 0.001 3.5E-08 71.9 11.2 52 166-217 15-74 (310)
216 4b4t_L 26S protease subunit RP 97.3 0.0064 2.2E-07 67.5 17.5 179 166-370 181-387 (437)
217 1ojl_A Transcriptional regulat 97.2 0.00046 1.6E-08 73.9 7.9 48 166-217 2-49 (304)
218 2kjq_A DNAA-related protein; s 97.2 0.00013 4.6E-09 68.6 3.1 86 194-312 37-124 (149)
219 1io0_A Tropomodulin; LRR prote 97.2 7.8E-05 2.7E-09 73.5 1.3 89 571-659 29-134 (185)
220 4fcw_A Chaperone protein CLPB; 97.2 0.0012 4.2E-08 71.3 11.0 121 167-297 18-143 (311)
221 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0029 9.8E-08 77.7 15.4 157 166-343 186-362 (758)
222 1lv7_A FTSH; alpha/beta domain 97.2 0.0067 2.3E-07 63.3 15.9 184 166-375 12-223 (257)
223 1io0_A Tropomodulin; LRR prote 97.2 0.00017 5.9E-09 71.0 3.3 114 542-659 32-162 (185)
224 4b4t_H 26S protease regulatory 97.2 0.0042 1.4E-07 68.7 14.5 179 166-370 209-415 (467)
225 3pxi_A Negative regulator of g 97.1 0.00078 2.7E-08 82.6 9.6 150 166-343 180-338 (758)
226 2bjv_A PSP operon transcriptio 97.1 0.00067 2.3E-08 71.4 7.8 47 167-217 7-53 (265)
227 4b4t_M 26S protease regulatory 97.1 0.004 1.4E-07 69.1 13.8 178 166-369 181-386 (434)
228 4b4t_I 26S protease regulatory 97.0 0.0047 1.6E-07 67.6 12.6 179 166-370 182-388 (437)
229 2ce7_A Cell division protein F 97.0 0.0057 2E-07 69.1 13.7 179 166-370 16-221 (476)
230 3pxi_A Negative regulator of g 97.0 0.001 3.5E-08 81.5 8.3 156 166-343 491-675 (758)
231 2r62_A Cell division protease 96.9 0.00047 1.6E-08 72.8 4.3 52 166-217 11-68 (268)
232 3cf2_A TER ATPase, transitiona 96.8 0.012 4E-07 70.6 15.6 180 166-371 204-408 (806)
233 2r44_A Uncharacterized protein 96.8 0.012 4E-07 64.1 14.6 152 167-345 28-200 (331)
234 4h09_A Hypothetical leucine ri 96.8 0.037 1.3E-06 61.5 18.7 101 980-1086 236-340 (379)
235 3m6a_A ATP-dependent protease 96.7 0.0041 1.4E-07 72.3 10.6 165 166-343 81-266 (543)
236 4h09_A Hypothetical leucine ri 96.7 0.053 1.8E-06 60.2 19.1 58 981-1040 283-341 (379)
237 3nbx_X ATPase RAVA; AAA+ ATPas 96.7 0.013 4.5E-07 66.7 14.0 43 167-217 23-65 (500)
238 2qgz_A Helicase loader, putati 96.5 0.0011 3.7E-08 71.1 3.5 45 171-218 133-177 (308)
239 2cvh_A DNA repair and recombin 96.5 0.0071 2.4E-07 61.3 9.6 85 193-284 20-116 (220)
240 3t15_A Ribulose bisphosphate c 96.5 0.017 5.8E-07 61.3 12.3 27 191-217 34-60 (293)
241 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0024 8.3E-08 67.0 4.1 69 193-284 123-193 (331)
242 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0069 2.4E-07 74.3 8.6 52 166-217 458-512 (758)
243 1ixz_A ATP-dependent metallopr 96.0 0.047 1.6E-06 56.6 12.8 51 166-217 16-73 (254)
244 1iy2_A ATP-dependent metallopr 95.9 0.067 2.3E-06 56.3 13.2 52 165-217 39-97 (278)
245 2dhr_A FTSH; AAA+ protein, hex 95.9 0.066 2.2E-06 60.8 13.7 176 165-370 30-236 (499)
246 3hr8_A Protein RECA; alpha and 95.8 0.02 6.8E-07 61.9 8.6 86 191-284 59-150 (356)
247 1qvr_A CLPB protein; coiled co 95.7 0.015 5E-07 72.1 8.4 136 167-312 559-710 (854)
248 2x8a_A Nuclear valosin-contain 95.6 0.079 2.7E-06 55.4 12.3 126 196-343 47-191 (274)
249 1rz3_A Hypothetical protein rb 95.4 0.017 5.8E-07 57.5 6.1 45 170-217 2-46 (201)
250 1ypw_A Transitional endoplasmi 95.4 0.11 3.7E-06 63.5 14.3 157 166-343 204-385 (806)
251 3ice_A Transcription terminati 95.4 0.013 4.4E-07 62.8 5.2 53 177-235 163-215 (422)
252 3io5_A Recombination and repai 95.4 0.043 1.5E-06 57.4 9.0 84 195-284 30-122 (333)
253 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.027 9.4E-07 57.5 7.4 114 194-313 24-168 (235)
254 1xp8_A RECA protein, recombina 95.2 0.046 1.6E-06 59.5 9.1 83 193-283 74-162 (366)
255 2cbz_A Multidrug resistance-as 95.2 0.12 4.2E-06 52.5 11.7 24 194-217 32-55 (237)
256 3rfe_A Platelet glycoprotein I 95.2 0.023 7.8E-07 51.6 5.5 53 581-635 11-66 (130)
257 2b8t_A Thymidine kinase; deoxy 95.0 0.0099 3.4E-07 59.6 2.9 113 193-314 12-127 (223)
258 1jr3_D DNA polymerase III, del 95.0 0.16 5.4E-06 55.3 12.9 156 194-376 19-184 (343)
259 1v5w_A DMC1, meiotic recombina 95.0 0.1 3.5E-06 56.6 11.2 58 191-249 120-180 (343)
260 2px0_A Flagellar biosynthesis 94.8 0.061 2.1E-06 56.8 8.4 86 193-282 105-191 (296)
261 2zr9_A Protein RECA, recombina 94.8 0.065 2.2E-06 58.1 8.7 84 192-283 60-149 (349)
262 1odf_A YGR205W, hypothetical 3 94.7 0.11 3.9E-06 54.5 10.0 82 191-272 29-117 (290)
263 1g5t_A COB(I)alamin adenosyltr 94.6 0.025 8.6E-07 54.8 4.4 116 195-313 30-163 (196)
264 1n0w_A DNA repair protein RAD5 94.6 0.083 2.8E-06 54.2 8.8 47 194-240 25-74 (243)
265 3tqc_A Pantothenate kinase; bi 94.5 0.1 3.5E-06 55.5 9.3 47 168-216 69-115 (321)
266 2i1q_A DNA repair and recombin 94.5 0.068 2.3E-06 57.7 8.1 90 192-282 97-213 (322)
267 2z43_A DNA repair and recombin 94.4 0.07 2.4E-06 57.5 7.9 56 193-249 107-165 (324)
268 2pze_A Cystic fibrosis transme 94.4 0.32 1.1E-05 49.1 12.4 24 194-217 35-58 (229)
269 1u94_A RECA protein, recombina 94.3 0.076 2.6E-06 57.6 7.9 84 192-283 62-151 (356)
270 1sky_E F1-ATPase, F1-ATP synth 94.1 0.12 4E-06 57.6 8.9 86 195-282 153-254 (473)
271 3c8u_A Fructokinase; YP_612366 94.1 0.035 1.2E-06 55.5 4.5 41 174-218 7-47 (208)
272 3l0o_A Transcription terminati 94.1 0.019 6.4E-07 61.4 2.4 54 176-235 163-216 (427)
273 1cr0_A DNA primase/helicase; R 94.0 0.13 4.4E-06 54.7 9.0 38 194-233 36-73 (296)
274 1gvn_B Zeta; postsegregational 93.8 0.057 1.9E-06 56.9 5.5 41 175-216 16-56 (287)
275 1zp6_A Hypothetical protein AT 93.7 0.038 1.3E-06 54.4 3.8 24 193-216 9-32 (191)
276 2orw_A Thymidine kinase; TMTK, 93.4 0.0076 2.6E-07 58.8 -1.9 109 194-314 4-114 (184)
277 2ck3_D ATP synthase subunit be 93.4 0.31 1.1E-05 54.0 10.6 65 177-248 142-207 (482)
278 1ly1_A Polynucleotide kinase; 93.4 0.04 1.4E-06 53.6 3.2 22 194-215 3-24 (181)
279 1qhx_A CPT, protein (chloramph 93.4 0.036 1.2E-06 53.7 3.0 24 194-217 4-27 (178)
280 3dm5_A SRP54, signal recogniti 93.4 0.4 1.4E-05 53.1 11.5 27 192-218 99-125 (443)
281 3lw7_A Adenylate kinase relate 93.3 0.038 1.3E-06 53.5 3.0 20 194-213 2-21 (179)
282 1vma_A Cell division protein F 93.3 0.27 9.2E-06 52.0 9.6 90 192-284 103-197 (306)
283 3kb2_A SPBC2 prophage-derived 93.2 0.039 1.3E-06 53.1 3.0 24 194-217 2-25 (173)
284 2p5t_B PEZT; postsegregational 93.2 0.069 2.4E-06 55.2 4.9 42 174-216 14-55 (253)
285 3sr0_A Adenylate kinase; phosp 93.1 0.13 4.6E-06 50.8 6.6 23 195-217 2-24 (206)
286 3vaa_A Shikimate kinase, SK; s 93.1 0.04 1.4E-06 54.7 2.8 24 194-217 26-49 (199)
287 3uie_A Adenylyl-sulfate kinase 93.1 0.049 1.7E-06 54.0 3.5 26 193-218 25-50 (200)
288 2ga8_A Hypothetical 39.9 kDa p 93.1 0.094 3.2E-06 56.0 5.7 47 169-217 2-48 (359)
289 3bh0_A DNAB-like replicative h 93.0 0.47 1.6E-05 50.6 11.3 51 193-248 68-118 (315)
290 3hws_A ATP-dependent CLP prote 93.0 0.072 2.5E-06 58.6 5.0 51 167-217 16-75 (363)
291 4a1f_A DNAB helicase, replicat 93.0 0.32 1.1E-05 52.1 9.7 51 194-249 47-97 (338)
292 1kgd_A CASK, peripheral plasma 93.0 0.041 1.4E-06 53.5 2.6 23 194-216 6-28 (180)
293 3kl4_A SRP54, signal recogniti 93.0 0.45 1.5E-05 52.7 11.2 90 192-284 96-190 (433)
294 2rhm_A Putative kinase; P-loop 92.9 0.057 2E-06 53.1 3.6 26 192-217 4-29 (193)
295 4gp7_A Metallophosphoesterase; 92.8 0.055 1.9E-06 52.0 3.2 23 193-215 9-31 (171)
296 3upu_A ATP-dependent DNA helic 92.8 0.12 4.1E-06 58.8 6.5 107 195-314 47-166 (459)
297 1kag_A SKI, shikimate kinase I 92.6 0.045 1.5E-06 52.8 2.4 23 194-216 5-27 (173)
298 1nks_A Adenylate kinase; therm 92.6 0.06 2.1E-06 53.0 3.3 25 194-218 2-26 (194)
299 3cf2_A TER ATPase, transitiona 92.6 0.38 1.3E-05 57.8 10.5 97 166-283 477-580 (806)
300 3trf_A Shikimate kinase, SK; a 92.5 0.051 1.7E-06 53.1 2.6 24 194-217 6-29 (185)
301 3tau_A Guanylate kinase, GMP k 92.5 0.059 2E-06 53.8 3.0 25 193-217 8-32 (208)
302 4eun_A Thermoresistant glucoki 92.5 0.054 1.9E-06 53.7 2.8 23 194-216 30-52 (200)
303 1knq_A Gluconate kinase; ALFA/ 92.5 0.069 2.4E-06 51.6 3.5 24 193-216 8-31 (175)
304 1pzn_A RAD51, DNA repair and r 92.4 0.29 9.9E-06 53.1 8.6 47 191-237 129-178 (349)
305 3tui_C Methionine import ATP-b 92.3 0.29 9.9E-06 52.8 8.4 56 262-317 170-228 (366)
306 3umf_A Adenylate kinase; rossm 92.3 0.066 2.3E-06 53.4 3.1 27 191-217 27-53 (217)
307 2xxa_A Signal recognition part 92.2 0.61 2.1E-05 52.0 11.2 58 174-233 78-138 (433)
308 3tr0_A Guanylate kinase, GMP k 92.2 0.067 2.3E-06 53.3 3.1 23 194-216 8-30 (205)
309 3asz_A Uridine kinase; cytidin 92.2 0.079 2.7E-06 53.0 3.7 25 192-216 5-29 (211)
310 2qt1_A Nicotinamide riboside k 92.2 0.086 2.9E-06 52.6 3.9 25 192-216 20-44 (207)
311 1uj2_A Uridine-cytidine kinase 92.1 0.074 2.5E-06 55.0 3.4 27 191-217 20-46 (252)
312 2ze6_A Isopentenyl transferase 92.1 0.073 2.5E-06 55.0 3.2 24 194-217 2-25 (253)
313 2bdt_A BH3686; alpha-beta prot 92.1 0.079 2.7E-06 51.9 3.4 22 194-215 3-24 (189)
314 1fx0_B ATP synthase beta chain 92.1 0.35 1.2E-05 53.9 8.7 64 177-247 154-218 (498)
315 3t61_A Gluconokinase; PSI-biol 92.1 0.058 2E-06 53.6 2.4 24 194-217 19-42 (202)
316 3e70_C DPA, signal recognition 92.0 0.65 2.2E-05 49.6 10.6 28 191-218 127-154 (328)
317 1ye8_A Protein THEP1, hypothet 92.0 0.078 2.7E-06 51.2 3.1 23 195-217 2-24 (178)
318 2qor_A Guanylate kinase; phosp 92.0 0.059 2E-06 53.6 2.4 25 193-217 12-36 (204)
319 3lda_A DNA repair protein RAD5 92.0 0.44 1.5E-05 52.5 9.4 57 193-250 178-237 (400)
320 1kht_A Adenylate kinase; phosp 91.9 0.073 2.5E-06 52.3 2.9 25 194-218 4-28 (192)
321 1tev_A UMP-CMP kinase; ploop, 91.9 0.08 2.7E-06 52.2 3.2 23 194-216 4-26 (196)
322 3iij_A Coilin-interacting nucl 91.9 0.062 2.1E-06 52.2 2.4 24 194-217 12-35 (180)
323 2j41_A Guanylate kinase; GMP, 91.9 0.073 2.5E-06 53.0 2.9 24 194-217 7-30 (207)
324 1y63_A LMAJ004144AAA protein; 91.9 0.074 2.5E-06 51.8 2.9 24 193-216 10-33 (184)
325 1ukz_A Uridylate kinase; trans 91.9 0.092 3.2E-06 52.1 3.6 25 192-216 14-38 (203)
326 1uf9_A TT1252 protein; P-loop, 91.8 0.093 3.2E-06 52.1 3.6 26 191-216 6-31 (203)
327 1zu4_A FTSY; GTPase, signal re 91.8 0.7 2.4E-05 49.2 10.6 28 191-218 103-130 (320)
328 1ex7_A Guanylate kinase; subst 91.8 0.055 1.9E-06 52.5 1.8 23 194-216 2-24 (186)
329 3a00_A Guanylate kinase, GMP k 91.8 0.061 2.1E-06 52.6 2.2 24 194-217 2-25 (186)
330 2dr3_A UPF0273 protein PH0284; 91.7 0.39 1.3E-05 49.2 8.4 39 194-235 24-62 (247)
331 2yvu_A Probable adenylyl-sulfa 91.7 0.1 3.5E-06 51.0 3.6 27 192-218 12-38 (186)
332 3a4m_A L-seryl-tRNA(SEC) kinas 91.7 0.089 3.1E-06 54.6 3.4 24 193-216 4-27 (260)
333 2c95_A Adenylate kinase 1; tra 91.7 0.083 2.8E-06 52.1 3.0 23 194-216 10-32 (196)
334 3ney_A 55 kDa erythrocyte memb 91.7 0.08 2.7E-06 51.7 2.8 24 193-216 19-42 (197)
335 1lvg_A Guanylate kinase, GMP k 91.6 0.066 2.3E-06 52.9 2.2 23 194-216 5-27 (198)
336 2jaq_A Deoxyguanosine kinase; 91.6 0.082 2.8E-06 52.5 2.9 23 195-217 2-24 (205)
337 3cm0_A Adenylate kinase; ATP-b 91.6 0.096 3.3E-06 51.1 3.4 23 194-216 5-27 (186)
338 2if2_A Dephospho-COA kinase; a 91.5 0.088 3E-06 52.3 3.1 21 195-215 3-23 (204)
339 2hf9_A Probable hydrogenase ni 91.5 0.15 5.1E-06 51.6 4.9 39 173-217 24-62 (226)
340 1g8p_A Magnesium-chelatase 38 91.5 0.095 3.2E-06 57.3 3.6 46 166-217 24-69 (350)
341 1jjv_A Dephospho-COA kinase; P 91.5 0.099 3.4E-06 52.1 3.4 22 194-215 3-24 (206)
342 3tlx_A Adenylate kinase 2; str 91.5 0.15 5.1E-06 52.2 4.8 26 192-217 28-53 (243)
343 2j37_W Signal recognition part 91.4 1.1 3.9E-05 50.7 12.3 28 191-218 99-126 (504)
344 1zuh_A Shikimate kinase; alpha 91.4 0.09 3.1E-06 50.3 2.9 25 193-217 7-31 (168)
345 2ffh_A Protein (FFH); SRP54, s 91.4 0.5 1.7E-05 52.3 9.2 25 194-218 99-123 (425)
346 3aez_A Pantothenate kinase; tr 91.4 0.11 3.6E-06 55.4 3.7 27 191-217 88-114 (312)
347 1tue_A Replication protein E1; 91.4 0.12 4.1E-06 50.3 3.6 38 175-217 45-82 (212)
348 2plr_A DTMP kinase, probable t 91.4 0.1 3.5E-06 52.2 3.4 25 194-218 5-29 (213)
349 1q57_A DNA primase/helicase; d 91.3 0.49 1.7E-05 54.5 9.5 54 192-249 241-294 (503)
350 1htw_A HI0065; nucleotide-bind 91.3 0.12 4.2E-06 48.6 3.6 23 194-216 34-56 (158)
351 3e1s_A Exodeoxyribonuclease V, 91.3 0.32 1.1E-05 56.6 7.9 104 194-311 205-314 (574)
352 1via_A Shikimate kinase; struc 91.3 0.088 3E-06 50.8 2.7 23 195-217 6-28 (175)
353 1cke_A CK, MSSA, protein (cyti 91.3 0.093 3.2E-06 53.2 3.0 23 194-216 6-28 (227)
354 2cdn_A Adenylate kinase; phosp 91.2 0.1 3.4E-06 51.8 3.1 25 193-217 20-44 (201)
355 1xjc_A MOBB protein homolog; s 91.2 0.096 3.3E-06 49.7 2.7 26 193-218 4-29 (169)
356 1um8_A ATP-dependent CLP prote 91.1 0.13 4.4E-06 56.9 4.2 24 194-217 73-96 (376)
357 2yhs_A FTSY, cell division pro 91.1 0.4 1.4E-05 53.7 8.0 28 191-218 291-318 (503)
358 2bbw_A Adenylate kinase 4, AK4 91.1 0.099 3.4E-06 53.8 3.0 23 194-216 28-50 (246)
359 1znw_A Guanylate kinase, GMP k 91.1 0.1 3.5E-06 52.0 3.0 23 194-216 21-43 (207)
360 1qf9_A UMP/CMP kinase, protein 91.0 0.11 3.9E-06 50.9 3.3 24 193-216 6-29 (194)
361 2jeo_A Uridine-cytidine kinase 91.0 0.13 4.3E-06 52.9 3.7 24 193-216 25-48 (245)
362 2iyv_A Shikimate kinase, SK; t 90.9 0.084 2.9E-06 51.5 2.1 23 195-217 4-26 (184)
363 1sq5_A Pantothenate kinase; P- 90.9 0.26 8.8E-06 52.5 6.1 25 192-216 79-103 (308)
364 2bwj_A Adenylate kinase 5; pho 90.9 0.11 3.8E-06 51.3 3.1 24 194-217 13-36 (199)
365 3fwy_A Light-independent proto 90.9 0.12 4.3E-06 54.9 3.6 41 191-234 46-86 (314)
366 1s96_A Guanylate kinase, GMP k 90.9 0.11 3.8E-06 52.1 3.0 24 193-216 16-39 (219)
367 1z6g_A Guanylate kinase; struc 90.8 0.093 3.2E-06 52.8 2.4 23 194-216 24-46 (218)
368 3jvv_A Twitching mobility prot 90.8 0.088 3E-06 57.1 2.3 110 194-316 124-234 (356)
369 1ls1_A Signal recognition part 90.8 0.43 1.5E-05 50.3 7.6 25 194-218 99-123 (295)
370 2vli_A Antibiotic resistance p 90.7 0.073 2.5E-06 51.8 1.5 24 194-217 6-29 (183)
371 2pt5_A Shikimate kinase, SK; a 90.7 0.12 4E-06 49.5 2.9 22 195-216 2-23 (168)
372 1j8m_F SRP54, signal recogniti 90.7 0.45 1.5E-05 50.1 7.6 90 193-285 98-192 (297)
373 1e6c_A Shikimate kinase; phosp 90.7 0.099 3.4E-06 50.3 2.3 23 194-216 3-25 (173)
374 3vr4_D V-type sodium ATPase su 90.6 0.27 9.4E-06 54.1 6.0 101 177-282 140-257 (465)
375 1nn5_A Similar to deoxythymidy 90.6 0.12 4.2E-06 51.8 3.1 25 194-218 10-34 (215)
376 2grj_A Dephospho-COA kinase; T 90.6 0.13 4.6E-06 50.2 3.2 25 192-216 11-35 (192)
377 2wwf_A Thymidilate kinase, put 90.5 0.12 4.1E-06 51.7 2.9 26 193-218 10-35 (212)
378 2wsm_A Hydrogenase expression/ 90.5 0.19 6.5E-06 50.6 4.5 43 169-217 12-54 (221)
379 2pez_A Bifunctional 3'-phospho 90.5 0.15 5E-06 49.5 3.4 25 193-217 5-29 (179)
380 2pbr_A DTMP kinase, thymidylat 90.5 0.12 4.2E-06 50.7 2.9 23 195-217 2-24 (195)
381 2qe7_A ATP synthase subunit al 90.4 0.48 1.6E-05 52.8 7.7 96 177-282 151-263 (502)
382 1aky_A Adenylate kinase; ATP:A 90.4 0.12 4.1E-06 52.1 2.8 24 194-217 5-28 (220)
383 2f6r_A COA synthase, bifunctio 90.4 0.16 5.6E-06 53.2 3.9 23 192-214 74-96 (281)
384 1rj9_A FTSY, signal recognitio 90.3 0.13 4.4E-06 54.5 3.0 26 193-218 102-127 (304)
385 1m7g_A Adenylylsulfate kinase; 90.2 0.16 5.3E-06 50.8 3.4 26 193-218 25-50 (211)
386 4e22_A Cytidylate kinase; P-lo 90.2 0.14 4.7E-06 52.8 3.1 23 194-216 28-50 (252)
387 2r9v_A ATP synthase subunit al 90.2 0.58 2E-05 52.2 8.1 96 177-282 164-276 (515)
388 2ged_A SR-beta, signal recogni 90.2 0.2 7E-06 49.0 4.3 25 192-216 47-71 (193)
389 4akg_A Glutathione S-transfera 90.1 0.86 2.9E-05 62.2 11.3 200 196-448 1270-1507(2695)
390 3bgw_A DNAB-like replicative h 90.1 0.95 3.3E-05 50.7 10.1 51 193-248 197-247 (444)
391 3llm_A ATP-dependent RNA helic 90.1 1.1 3.7E-05 45.4 9.8 90 194-284 77-187 (235)
392 2v54_A DTMP kinase, thymidylat 90.0 0.14 4.8E-06 50.8 2.9 24 194-217 5-28 (204)
393 1gtv_A TMK, thymidylate kinase 90.0 0.084 2.9E-06 52.9 1.2 24 195-218 2-25 (214)
394 3rfe_A Platelet glycoprotein I 90.0 0.36 1.2E-05 43.6 5.3 53 604-659 11-66 (130)
395 1zd8_A GTP:AMP phosphotransfer 90.0 0.15 5E-06 51.7 3.1 23 194-216 8-30 (227)
396 2z0h_A DTMP kinase, thymidylat 90.0 0.15 5E-06 50.3 3.0 23 195-217 2-24 (197)
397 3cmu_A Protein RECA, recombina 89.9 0.33 1.1E-05 63.7 6.8 84 192-283 1426-1515(2050)
398 1zak_A Adenylate kinase; ATP:A 89.8 0.13 4.4E-06 51.9 2.5 24 194-217 6-29 (222)
399 2f1r_A Molybdopterin-guanine d 89.8 0.11 3.7E-06 49.7 1.8 25 194-218 3-27 (171)
400 3b9q_A Chloroplast SRP recepto 89.8 0.18 6.1E-06 53.3 3.6 26 192-217 99-124 (302)
401 3fb4_A Adenylate kinase; psych 89.7 0.14 4.9E-06 51.3 2.7 23 195-217 2-24 (216)
402 2r6a_A DNAB helicase, replicat 89.7 0.76 2.6E-05 51.9 9.0 50 193-246 203-252 (454)
403 3gqb_B V-type ATP synthase bet 89.7 0.41 1.4E-05 52.7 6.4 101 177-282 136-260 (464)
404 3dl0_A Adenylate kinase; phosp 89.7 0.15 5E-06 51.3 2.8 22 195-216 2-23 (216)
405 2i3b_A HCR-ntpase, human cance 89.6 0.14 4.9E-06 49.8 2.5 23 195-217 3-25 (189)
406 1vht_A Dephospho-COA kinase; s 89.6 0.19 6.5E-06 50.5 3.5 22 194-215 5-26 (218)
407 3p32_A Probable GTPase RV1496/ 89.6 0.33 1.1E-05 52.9 5.7 39 175-217 65-103 (355)
408 4a74_A DNA repair and recombin 89.6 0.19 6.3E-06 51.0 3.5 44 192-235 24-70 (231)
409 2q6t_A DNAB replication FORK h 89.5 0.92 3.1E-05 51.1 9.4 52 193-248 200-251 (444)
410 2pcj_A ABC transporter, lipopr 89.4 0.18 6.1E-06 50.8 3.1 23 194-216 31-53 (224)
411 3a8t_A Adenylate isopentenyltr 89.4 0.22 7.4E-06 52.9 3.8 25 193-217 40-64 (339)
412 3tif_A Uncharacterized ABC tra 89.3 0.18 6E-06 51.3 3.0 24 194-217 32-55 (235)
413 2onk_A Molybdate/tungstate ABC 89.2 0.17 5.8E-06 51.5 2.8 23 194-216 25-47 (240)
414 3ozx_A RNAse L inhibitor; ATP 89.2 1.1 3.7E-05 51.6 9.8 24 193-216 25-48 (538)
415 3mfy_A V-type ATP synthase alp 89.1 0.87 3E-05 51.2 8.5 59 177-245 216-275 (588)
416 2ehv_A Hypothetical protein PH 89.1 0.19 6.4E-06 51.8 3.1 22 194-215 31-52 (251)
417 3vr4_A V-type sodium ATPase ca 89.0 0.59 2E-05 52.7 7.1 58 177-244 221-279 (600)
418 3d3q_A TRNA delta(2)-isopenten 89.0 0.2 6.8E-06 53.4 3.2 23 194-216 8-30 (340)
419 2ck3_A ATP synthase subunit al 88.9 0.71 2.4E-05 51.6 7.7 101 177-282 151-271 (510)
420 1g41_A Heat shock protein HSLU 88.9 0.29 9.8E-06 54.4 4.5 52 166-217 15-74 (444)
421 3oaa_A ATP synthase subunit al 88.9 1.1 3.8E-05 49.8 9.1 96 177-282 151-263 (513)
422 3r20_A Cytidylate kinase; stru 88.8 0.2 6.9E-06 50.4 3.0 24 194-217 10-33 (233)
423 3b5x_A Lipid A export ATP-bind 88.8 1.2 4.2E-05 52.1 10.2 23 194-216 370-392 (582)
424 3nwj_A ATSK2; P loop, shikimat 88.8 0.16 5.6E-06 51.9 2.4 24 194-217 49-72 (250)
425 3exa_A TRNA delta(2)-isopenten 88.7 0.24 8E-06 51.9 3.5 23 194-216 4-26 (322)
426 2c61_A A-type ATP synthase non 88.7 0.38 1.3E-05 53.4 5.3 101 177-282 141-258 (469)
427 1np6_A Molybdopterin-guanine d 88.7 0.19 6.7E-06 48.0 2.7 25 193-217 6-30 (174)
428 3gfo_A Cobalt import ATP-bindi 88.6 0.21 7.2E-06 51.9 3.1 22 194-215 35-56 (275)
429 1mv5_A LMRA, multidrug resista 88.6 0.25 8.5E-06 50.5 3.6 23 194-216 29-51 (243)
430 1b0u_A Histidine permease; ABC 88.6 0.21 7.2E-06 51.7 3.0 23 194-216 33-55 (262)
431 3lnc_A Guanylate kinase, GMP k 88.6 0.15 5.1E-06 51.8 1.9 23 194-216 28-51 (231)
432 3j16_B RLI1P; ribosome recycli 88.6 1.3 4.6E-05 51.6 10.1 23 194-216 104-126 (608)
433 2og2_A Putative signal recogni 88.6 0.24 8.3E-06 53.5 3.6 26 192-217 156-181 (359)
434 3crm_A TRNA delta(2)-isopenten 88.5 0.23 7.8E-06 52.6 3.2 23 194-216 6-28 (323)
435 3ake_A Cytidylate kinase; CMP 88.5 0.22 7.4E-06 49.6 3.0 22 195-216 4-25 (208)
436 2zej_A Dardarin, leucine-rich 88.5 0.21 7.3E-06 48.5 2.8 22 195-216 4-25 (184)
437 3b85_A Phosphate starvation-in 88.4 0.17 5.8E-06 50.2 2.1 23 194-216 23-45 (208)
438 2wji_A Ferrous iron transport 88.4 0.29 9.8E-06 46.5 3.7 23 194-216 4-26 (165)
439 1oix_A RAS-related protein RAB 88.4 0.24 8.1E-06 48.5 3.2 25 193-217 29-53 (191)
440 2qmh_A HPR kinase/phosphorylas 88.4 0.24 8.3E-06 47.8 3.1 23 194-216 35-57 (205)
441 1pgv_A TMD-1, tropomodulin TMD 88.4 0.24 8.2E-06 48.1 3.1 89 570-658 33-136 (197)
442 3be4_A Adenylate kinase; malar 88.4 0.23 7.8E-06 49.9 3.1 24 194-217 6-29 (217)
443 3k1j_A LON protease, ATP-depen 88.4 0.34 1.2E-05 57.1 5.1 44 166-217 41-84 (604)
444 2olj_A Amino acid ABC transpor 88.3 0.22 7.7E-06 51.3 3.0 23 194-216 51-73 (263)
445 2xb4_A Adenylate kinase; ATP-b 88.3 0.22 7.6E-06 50.2 2.9 22 195-216 2-23 (223)
446 1e4v_A Adenylate kinase; trans 88.3 0.23 8E-06 49.7 3.1 23 195-217 2-24 (214)
447 1ji0_A ABC transporter; ATP bi 88.3 0.23 8E-06 50.6 3.1 23 194-216 33-55 (240)
448 1sgw_A Putative ABC transporte 88.2 0.2 6.8E-06 49.9 2.5 23 194-216 36-58 (214)
449 2vp4_A Deoxynucleoside kinase; 88.2 0.27 9.1E-06 49.9 3.5 26 191-216 18-43 (230)
450 3bk7_A ABC transporter ATP-bin 88.2 1.4 4.6E-05 51.6 9.9 124 194-317 383-536 (607)
451 4g1u_C Hemin import ATP-bindin 88.2 0.23 8E-06 51.4 3.0 24 194-217 38-61 (266)
452 3b60_A Lipid A export ATP-bind 88.2 1.2 4.1E-05 52.2 9.5 23 194-216 370-392 (582)
453 1g6h_A High-affinity branched- 88.1 0.24 8.1E-06 51.1 3.1 23 194-216 34-56 (257)
454 2ff7_A Alpha-hemolysin translo 87.9 0.25 8.6E-06 50.5 3.1 23 194-216 36-58 (247)
455 2d2e_A SUFC protein; ABC-ATPas 87.9 0.26 8.8E-06 50.6 3.1 23 194-216 30-52 (250)
456 3zvl_A Bifunctional polynucleo 87.9 0.24 8.3E-06 55.2 3.2 27 191-217 256-282 (416)
457 1vpl_A ABC transporter, ATP-bi 87.9 0.25 8.5E-06 50.8 3.0 23 194-216 42-64 (256)
458 3foz_A TRNA delta(2)-isopenten 87.9 0.31 1.1E-05 50.9 3.7 25 192-216 9-33 (316)
459 1ak2_A Adenylate kinase isoenz 87.9 0.25 8.4E-06 50.3 3.0 24 194-217 17-40 (233)
460 1yrb_A ATP(GTP)binding protein 87.9 0.31 1.1E-05 50.5 3.8 28 191-218 12-39 (262)
461 2j9r_A Thymidine kinase; TK1, 87.8 0.48 1.7E-05 46.5 4.8 109 193-314 28-139 (214)
462 2ghi_A Transport protein; mult 87.7 0.26 8.8E-06 50.9 3.0 23 194-216 47-69 (260)
463 1ltq_A Polynucleotide kinase; 87.7 0.27 9.1E-06 52.3 3.2 23 194-216 3-25 (301)
464 2zu0_C Probable ATP-dependent 87.7 0.27 9.1E-06 51.0 3.1 23 194-216 47-69 (267)
465 2ixe_A Antigen peptide transpo 87.6 0.26 8.9E-06 51.2 3.0 23 194-216 46-68 (271)
466 3hjn_A DTMP kinase, thymidylat 87.6 0.77 2.6E-05 45.0 6.3 25 195-219 2-26 (197)
467 2qi9_C Vitamin B12 import ATP- 87.6 0.27 9.3E-06 50.3 3.1 24 194-217 27-50 (249)
468 2eyu_A Twitching motility prot 87.6 0.32 1.1E-05 50.2 3.6 110 193-315 25-135 (261)
469 2f9l_A RAB11B, member RAS onco 87.4 0.26 8.9E-06 48.6 2.8 23 194-216 6-28 (199)
470 2dyk_A GTP-binding protein; GT 87.3 0.33 1.1E-05 45.7 3.3 24 194-217 2-25 (161)
471 2v9p_A Replication protein E1; 87.3 0.26 9.1E-06 51.8 2.8 24 194-217 127-150 (305)
472 4eaq_A DTMP kinase, thymidylat 87.3 0.34 1.1E-05 49.0 3.5 27 192-218 25-51 (229)
473 2nq2_C Hypothetical ABC transp 87.2 0.29 9.9E-06 50.2 3.1 24 194-217 32-55 (253)
474 2yz2_A Putative ABC transporte 87.2 0.29 9.8E-06 50.8 3.0 23 194-216 34-56 (266)
475 2ihy_A ABC transporter, ATP-bi 87.2 0.29 1E-05 51.0 3.1 24 194-217 48-71 (279)
476 2ce2_X GTPase HRAS; signaling 87.0 0.3 1E-05 46.1 2.9 22 195-216 5-26 (166)
477 3lv8_A DTMP kinase, thymidylat 87.0 0.65 2.2E-05 46.8 5.4 35 194-230 28-62 (236)
478 2wjg_A FEOB, ferrous iron tran 86.9 0.39 1.3E-05 46.7 3.7 24 193-216 7-30 (188)
479 2nzj_A GTP-binding protein REM 86.8 0.33 1.1E-05 46.5 3.0 24 194-217 5-28 (175)
480 1fx0_A ATP synthase alpha chai 86.7 0.8 2.7E-05 51.1 6.4 82 194-282 164-264 (507)
481 4gzl_A RAS-related C3 botulinu 86.7 0.38 1.3E-05 47.6 3.5 23 194-216 31-53 (204)
482 3nh6_A ATP-binding cassette SU 86.7 0.41 1.4E-05 50.5 3.9 24 194-217 81-104 (306)
483 3qf4_A ABC transporter, ATP-bi 86.6 1.9 6.5E-05 50.4 9.9 24 194-217 370-393 (587)
484 2ocp_A DGK, deoxyguanosine kin 86.5 0.38 1.3E-05 49.1 3.5 24 194-217 3-26 (241)
485 1z2a_A RAS-related protein RAB 86.5 0.32 1.1E-05 46.1 2.8 23 194-216 6-28 (168)
486 2gj8_A MNME, tRNA modification 86.5 0.36 1.2E-05 46.2 3.1 23 194-216 5-27 (172)
487 1q3t_A Cytidylate kinase; nucl 86.4 0.33 1.1E-05 49.4 2.9 26 191-216 14-39 (236)
488 3end_A Light-independent proto 86.4 0.38 1.3E-05 51.3 3.6 42 191-235 39-80 (307)
489 3cmu_A Protein RECA, recombina 86.4 0.77 2.6E-05 60.4 6.8 84 192-283 382-471 (2050)
490 3q72_A GTP-binding protein RAD 86.3 0.35 1.2E-05 45.8 2.9 22 195-216 4-25 (166)
491 1nlf_A Regulatory protein REPA 86.3 0.35 1.2E-05 50.7 3.2 23 194-216 31-53 (279)
492 1a7j_A Phosphoribulokinase; tr 86.2 0.18 6E-06 53.2 0.7 25 193-217 5-29 (290)
493 3sop_A Neuronal-specific septi 86.1 0.37 1.3E-05 50.0 3.2 22 195-216 4-25 (270)
494 3vkw_A Replicase large subunit 86.1 2.6 8.7E-05 46.6 9.9 25 191-215 159-183 (446)
495 3ld9_A DTMP kinase, thymidylat 86.1 0.86 2.9E-05 45.4 5.7 28 192-219 20-47 (223)
496 3con_A GTPase NRAS; structural 86.1 0.35 1.2E-05 47.2 2.8 24 194-217 22-45 (190)
497 1svm_A Large T antigen; AAA+ f 86.0 0.35 1.2E-05 52.7 3.1 24 193-216 169-192 (377)
498 4a82_A Cystic fibrosis transme 86.0 1.5 5.1E-05 51.2 8.7 24 194-217 368-391 (578)
499 2pjz_A Hypothetical protein ST 86.0 0.37 1.3E-05 49.7 3.1 23 194-216 31-53 (263)
500 1fzq_A ADP-ribosylation factor 85.8 0.5 1.7E-05 45.6 3.8 24 193-216 16-39 (181)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-47 Score=452.61 Aligned_cols=317 Identities=17% Similarity=0.232 Sum_probs=258.4
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc--cccccccCCCeEEEEEeCCcc--cHHHHHHH
Q 047894 169 FGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYN--DKAVRDSKFDVKAWVCVSDVF--DVLGISKA 244 (1087)
Q Consensus 169 vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~ 244 (1087)
|||++++++|.++|..... +..++|+|+||||+||||||+++|+ +.+++. +|++++||++++.+ +...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI-NYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT-TBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc-cCCcEEEEEECCCCCCCHHHHHHH
Confidence 5999999999999976532 4579999999999999999999998 566776 99999999999985 88999999
Q ss_pred HHHHhhcCCC-------CcccHHHHHHHHHHhhCCC-ceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccc
Q 047894 245 LLESITSAAS-------DLKTLNEVQVQLKKAVDGK-RFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA 316 (1087)
Q Consensus 245 i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~ 316 (1087)
|+.+++.... +..+.+.+...+++.++++ ||||||||||+.+...|... +||+||||||++.++
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHH
Confidence 9999986521 2234567788999999996 99999999998643344422 799999999999999
Q ss_pred cccCCC-ceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCCCHHHHHHHHhhh
Q 047894 317 STMGPI-EHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTTRHDAWDDILESK 395 (1087)
Q Consensus 317 ~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~w~~~~~~~ 395 (1087)
..++.. ..|+|++|++++||+||.+++|+... ++...+++++|+++|+|+||||+++|+.++.+.+ +|...+.+.
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~ 354 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNK 354 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHH
Confidence 877633 67999999999999999999876532 4567889999999999999999999999987753 333444433
Q ss_pred ccCCCCCCChHHHHHhhhcCCchhhHHHHH-----------HHccCCCCcccChhhhHHHhHhC--CCcccCCchhhHHH
Q 047894 396 IWDLPRQSGVLPVLRLSYHHLPSHLKRCLA-----------YCAIFPKDYEFNEKEVTFLWMAG--GIIRQSRSKERLED 462 (1087)
Q Consensus 396 ~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~ae--g~i~~~~~~~~~e~ 462 (1087)
.+..+ ...+..++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.......+.++
T Consensus 355 l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 355 LESRG-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp HHHHC-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred hhccc-HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 33222 356889999999999999999999 999999999998 8999999 99987544567788
Q ss_pred HHHHHHHHHhhCCCCcccccCCcccEEEcHHHHHHHHHhhhcceE
Q 047894 463 WGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELVSRETIF 507 (1087)
Q Consensus 463 ~~~~~~~~L~~~~l~~~~~~~~~~~~~~h~~v~~~~~~~~~~~~~ 507 (1087)
+++ ||++|+++||+++...+...+|+|||+||+||++++.++++
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 888 99999999999987644456799999999999999887664
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.6e-38 Score=371.18 Aligned_cols=285 Identities=17% Similarity=0.238 Sum_probs=227.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCe-EEEEEeCCcccHHHHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDV-KAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i 245 (1087)
..|||++++++|.++|.... ..++|+|+||||+||||||+++|++.+++. +|+. ++|+++++.++...++..+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~-~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHH-HHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHH-hCCCcEEEEEeCCCCCHHHHHHHH
Confidence 45999999999999998532 357999999999999999999999877776 8986 9999999998888888888
Q ss_pred HHHhhcCC------CC-----cccHHHHHHHHHHhh---CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcC
Q 047894 246 LESITSAA------SD-----LKTLNEVQVQLKKAV---DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTR 311 (1087)
Q Consensus 246 ~~~l~~~~------~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr 311 (1087)
++.+.... .+ ..+.+.+...+++.+ .++|+||||||||+. ..|..+ + +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEecc
Confidence 77543211 01 123455666777755 789999999999984 566553 2 6999999999
Q ss_pred CcccccccCCCceeeCC------CCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCC--
Q 047894 312 NSNVASTMGPIEHYNLK------SLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTT-- 383 (1087)
Q Consensus 312 ~~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~-- 383 (1087)
++.++..+.....+.++ +|+++|||+||.+.. +... .++..+ .|+|+||||+++|+.|+.+
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~e---ICgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPRE---VLTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHH---HCCCCHHHHHHHHHHHHHSCS
T ss_pred ChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHH---HhCCCHHHHHHHHHHHhCCCC
Confidence 99988644333346666 999999999999884 3221 122233 3999999999999999987
Q ss_pred CHHHHHHHHhhhccCCCCCCChHHHHHhhhcCCchhh-HHHHHHHccCCCCcccChhhhHHHhHhCCCcccCCchhhHHH
Q 047894 384 RHDAWDDILESKIWDLPRQSGVLPVLRLSYHHLPSHL-KRCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKERLED 462 (1087)
Q Consensus 384 ~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~e~ 462 (1087)
+.++|... ....+..+|.+||+.||++. |+||+|||+||+++.|+++.++.+|+++| ++
T Consensus 343 s~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 343 TWDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp SHHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred CHHHHhcC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HH
Confidence 77888753 23679999999999999999 99999999999999999999999999987 13
Q ss_pred HHHHHHHHHhhCCCCcccccCCcccEEEcHHHHHHHH
Q 047894 463 WGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAE 499 (1087)
Q Consensus 463 ~~~~~~~~L~~~~l~~~~~~~~~~~~~~h~~v~~~~~ 499 (1087)
.++.++++|+++||++.. ....+|+|||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d--~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBC--SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEe--CCCCEEEehHHHHHHhc
Confidence 477899999999999974 23568999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.6e-36 Score=396.75 Aligned_cols=313 Identities=21% Similarity=0.272 Sum_probs=249.0
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc-cccCCCeEEEEEeCCccc--H
Q 047894 162 VPTEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAV-RDSKFDVKAWVCVSDVFD--V 238 (1087)
Q Consensus 162 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~~--~ 238 (1087)
|+....||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ....|+.++||+++...+ .
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 4455679999999999999997553 45689999999999999999999998644 322456888999998543 4
Q ss_pred HHHHHHHHHHhhcCCC----CcccHHHHHHHHHHhhCCC--ceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC
Q 047894 239 LGISKALLESITSAAS----DLKTLNEVQVQLKKAVDGK--RFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN 312 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~ 312 (1087)
...+..++..+..... .....+++...++..+.++ ||||||||||+. ..|.. ..+||+||||||+
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESS
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCC
Confidence 4456667777665432 3456788889999999877 999999999975 34433 2579999999999
Q ss_pred cccccc-cCCCceeeCCC-CChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCCCHHHHHH
Q 047894 313 SNVAST-MGPIEHYNLKS-LSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTTRHDAWDD 390 (1087)
Q Consensus 313 ~~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~w~~ 390 (1087)
+.++.. .+....+.+++ |+++++++||...++... +...+++++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~ 340 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAY 340 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHH
T ss_pred HHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHH
Confidence 999854 45557899996 999999999999884322 23345688999999999999999999998774 35766
Q ss_pred HHhhhccCCC----C-----CCChHHHHHhhhcCCchhhHHHHHHHccCCCCcccChhhhHHHhHhCCCcccCCchhhHH
Q 047894 391 ILESKIWDLP----R-----QSGVLPVLRLSYHHLPSHLKRCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKERLE 461 (1087)
Q Consensus 391 ~~~~~~~~~~----~-----~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~e 461 (1087)
.++....... . ...+..+|.+||+.||+++|+||+|||+||+++.|+++.++.+|.++ +
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~ 408 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------T 408 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------H
Confidence 6654322211 1 14588999999999999999999999999999999999999999664 3
Q ss_pred HHHHHHHHHHhhCCCCcccccCCcccEEEcHHHHHHHHHhhhcc
Q 047894 462 DWGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELVSRET 505 (1087)
Q Consensus 462 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~~h~~v~~~~~~~~~~~ 505 (1087)
+.++.++++|+++||++....+...+|+||++||+||+..+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 56789999999999999765333346999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=339.99 Aligned_cols=306 Identities=21% Similarity=0.297 Sum_probs=233.2
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc-cccCC-CeEEEEEeCCcccHHHH
Q 047894 164 TEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAV-RDSKF-DVKAWVCVSDVFDVLGI 241 (1087)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~-~~~~f-~~~~wv~~s~~~~~~~~ 241 (1087)
.++.||||+.++++|.+++.... +..++|+|+|+||+||||||.+++++..+ .. +| +.++|++++.. +...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEG-CFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHH-HCTTCEEEEEEESC-CHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHh-hCCCceEEEECCCC-chHHH
Confidence 34679999999999999997542 34689999999999999999999998655 44 78 58999999875 33333
Q ss_pred HHHH---HHHhhcC----CCCcccHHHHHHHHHHhhCC--CceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC
Q 047894 242 SKAL---LESITSA----ASDLKTLNEVQVQLKKAVDG--KRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN 312 (1087)
Q Consensus 242 ~~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~ 312 (1087)
+..+ +..+... .....+.+.+...+...+.+ +++||||||+|+. ..+. .+ .+|++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCC
Confidence 3333 3344321 12345667777788887765 7899999999874 2222 22 468999999999
Q ss_pred cccccccCCCceeeC---CCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCCCHHHHH
Q 047894 313 SNVASTMGPIEHYNL---KSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTTRHDAWD 389 (1087)
Q Consensus 313 ~~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~w~ 389 (1087)
..++..+.. ..+.+ ++|+.+|++++|...++.. .....+.+.+|+++|+|+||||..+|+.++... .+|.
T Consensus 267 ~~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~ 339 (591)
T 1z6t_A 267 KSVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWE 339 (591)
T ss_dssp GGGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHH
T ss_pred cHHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHH
Confidence 988765432 23333 6899999999999988642 122245678999999999999999999998763 3677
Q ss_pred HHHhhhccCC----C-----CCCChHHHHHhhhcCCchhhHHHHHHHccCCCCcccChhhhHHHhHhCCCcccCCchhhH
Q 047894 390 DILESKIWDL----P-----RQSGVLPVLRLSYHHLPSHLKRCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKERL 460 (1087)
Q Consensus 390 ~~~~~~~~~~----~-----~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~ 460 (1087)
..+....... . ....+..++..||+.||++.|.||.+||+||+++.|+.+.++.+|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------ 407 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------ 407 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------
Confidence 6665433221 1 124688999999999999999999999999999999999999999553
Q ss_pred HHHHHHHHHHHhhCCCCcccccCCcccEEEcHHHHHHHHHhhh
Q 047894 461 EDWGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELVSR 503 (1087)
Q Consensus 461 e~~~~~~~~~L~~~~l~~~~~~~~~~~~~~h~~v~~~~~~~~~ 503 (1087)
++.+..++++|+++||++....+....|+||+++|++++....
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 2346789999999999996653344579999999999998743
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-32 Score=334.87 Aligned_cols=496 Identities=16% Similarity=0.047 Sum_probs=317.5
Q ss_pred CCCCCcceEEEEEeccCCccccccccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCccc-Cc
Q 047894 517 SRGFERARHSSYARDWCDGRNKFEVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGEL-PI 595 (1087)
Q Consensus 517 ~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~l-p~ 595 (1087)
...+...+++.+........ ....+.++++|+.|.+.++.. ..+.+..|.++++|++|+|++|.+..+ |.
T Consensus 28 ~~~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l--------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 28 DDIPSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEI--------ETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp TTSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCCCCCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcc--------cccCHHHhhchhhcCEeECCCCcccccChh
Confidence 34556777777755432211 123466778888887655432 223445677888888888888888776 77
Q ss_pred cccCCccceeeccCCCcCcccc-cccccCCCCcEEEecCCCCCc-ccCcccCCCCCcCEEeecCCcccccc-CccCCCCC
Q 047894 596 PFEELRLLRFLNLADIDIKSLP-ESTCKLLNLEILILRNCSRLI-KLPPKMRNLINLNHLDIRGAKLLKEM-PCGMKELK 672 (1087)
Q Consensus 596 ~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~ 672 (1087)
.|+++.+|++|++++|.++.+| ..++++++|++|++++|.... .+|..++++++|++|++++|. +..+ |..++.++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhh
Confidence 8888888888888888888776 678888888888888876433 578888888888888888887 4444 44566666
Q ss_pred CCCc----cCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhh
Q 047894 673 KLRT----LSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAV 748 (1087)
Q Consensus 673 ~L~~----L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 748 (1087)
+|+. |+.........+...-....|+.+ .+.............+.++.+++.+.+..............
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L-------~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL-------TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTCEEEEE-------EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccccccceeeccCCCcceeCcccccCceeeee-------eccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 6553 332222111111111111122222 12222222345566677888888877765543221100000
Q ss_pred H-----------------------HHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCC
Q 047894 749 E-----------------------EHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLG 805 (1087)
Q Consensus 749 ~-----------------------~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~ 805 (1087)
. ......+...++|+.|.+.++....+| ++.. +++|+.|++++|.. ..+|.+
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~--~~~L~~L~l~~n~l-~~lp~~- 325 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPK--HFKWQSLSIIRCQL-KQFPTL- 325 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCT--TCCCSEEEEESCCC-SSCCCC-
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccc--cccCCEEEcccccC-cccccC-
Confidence 0 011112445567777777777776666 4443 67777777777777 566666
Q ss_pred CcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccC
Q 047894 806 RLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGEL 885 (1087)
Q Consensus 806 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 885 (1087)
.+++|+.|+++++..+.... ...+++|+.|++++...-.... +. .....+++|+.|++++| .+. .+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~ls~n~l~~~~~--~~--~~~~~~~~L~~L~L~~n-~l~-~~ 391 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFK--------KVALPSLSYLDLSRNALSFSGC--CS--YSDLGTNSLRHLDLSFN-GAI-IM 391 (606)
T ss_dssp CCSSCCEEEEESCSSCEECC--------CCCCTTCCEEECCSSCEEEEEE--CC--HHHHCCSCCCEEECCSC-SEE-EE
T ss_pred CCCccceeeccCCcCccchh--------hccCCCCCEEECcCCccCCCcc--hh--hhhccCCcccEeECCCC-ccc-cc
Confidence 77777777777765444321 1236777777776643111100 00 01234677777777777 444 23
Q ss_pred C---CCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCC
Q 047894 886 P---ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCES 962 (1087)
Q Consensus 886 p---~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 962 (1087)
| ..+++|++|++++|....... ...+..+++|++|++++|.+....|..+ ..+++|+.|++++|..
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTE----------FSAFLSLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSF 460 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTT----------TTTTTTCTTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEE
T ss_pred hhhccCCCCCCeeECCCCccCCccC----------hhhhhccccCCEEECcCCCCCccchhhh-cCCCCCCEEECCCCcC
Confidence 3 245677777777663211100 0235567789999999998776666654 6789999999998864
Q ss_pred CcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecC
Q 047894 963 LTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKC 1042 (1087)
Q Consensus 963 l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c 1042 (1087)
.... +|. .+..+++|+.|++++|.+++..|..+..+++|++|++++|++.+..|..+.++++|++|++++|
T Consensus 461 ~~~~----~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 461 KDNT----LSN-----VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp GGGE----ECS-----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred CCcc----hHH-----hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 3311 122 3567789999999999999888888999999999999999998888889999999999999995
Q ss_pred CCCcccCCC--CCCCCcCeEEEccCCCCC
Q 047894 1043 PSLVSFPER--GLPNTISAVYICECDKLE 1069 (1087)
Q Consensus 1043 ~~l~~lp~~--~~~~sL~~L~i~~c~~l~ 1069 (1087)
.++.+|.. .++.+|+.|++++|+...
T Consensus 532 -~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 532 -RIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp -CCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred -cCcccCHhHhhhcccCcEEEccCCCccc
Confidence 58888874 334579999999987554
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-33 Score=348.10 Aligned_cols=481 Identities=18% Similarity=0.143 Sum_probs=282.4
Q ss_pred cccCCCCcccEEEecCCCCc-ccCc--cccCCccceeeccCCCcCc-cccccc-ccCCCCcEEEecCCCCCcccCcc---
Q 047894 572 DLLPKFKRLRMLSLQGYCIG-ELPI--PFEELRLLRFLNLADIDIK-SLPEST-CKLLNLEILILRNCSRLIKLPPK--- 643 (1087)
Q Consensus 572 ~~~~~~~~Lr~L~l~~~~i~-~lp~--~i~~l~~L~~L~L~~~~i~-~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~--- 643 (1087)
..+.++++|++|+|++|.+. .+|. .++++.+|++|++++|.+. ..|..+ .++++|++|++++|......|..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 45778888888888888874 4666 7888888888888888876 445554 78888888888887754445554
Q ss_pred cCCCCCcCEEeecCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhc
Q 047894 644 MRNLINLNHLDIRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAAL 723 (1087)
Q Consensus 644 i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 723 (1087)
+.++++|++|++++|......| ++++++|++|+...+........+..++.|+.| .+. . +.+.+.....+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L----~Ls---~-n~l~~~~~~~l 243 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL----DIS---G-NKLSGDFSRAI 243 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEE----ECC---S-SCCCSCHHHHT
T ss_pred hccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEE----ECc---C-CcCCCcccHHH
Confidence 7788888888888887333232 477888888876554433212224444444444 221 1 22334456677
Q ss_pred cCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCC-CCCCCcCCcccCcccEEeeeCCCCCCCCC
Q 047894 724 CEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-RFPLWIGDPLFCKIELLELENCDNCVSLP 802 (1087)
Q Consensus 724 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 802 (1087)
..+.+|+.|+++++...... ... ..++|+.|.++++... .+|.++.. .+++|+.|++++|.+...+|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~----------~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPI----------PPL-PLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp TTCSSCCEEECCSSCCEESC----------CCC-CCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCC
T ss_pred hcCCCCCEEECCCCcccCcc----------Ccc-ccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccc
Confidence 88889999998876542211 111 5677888888877655 67777654 24888999998888766666
Q ss_pred -CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCC-cccEEEEecCCC
Q 047894 803 -SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFP-RLHKLSIVECPK 880 (1087)
Q Consensus 803 -~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~ 880 (1087)
.++.+++|++|+++++.....++....+ .+++|+.|++++...-......+ ..++ +|+.|++++| .
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~-----~l~~L~~L~Ls~n~l~~~~p~~l------~~l~~~L~~L~Ls~N-~ 379 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLL-----KMRGLKVLDLSFNEFSGELPESL------TNLSASLLTLDLSSN-N 379 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHT-----TCTTCCEEECCSSEEEECCCTTH------HHHTTTCSEEECCSS-E
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHh-----cCCCCCEEeCcCCccCccccHHH------HhhhcCCcEEEccCC-C
Confidence 6788888999988887544344443222 27778888777653221111000 1122 5555555555 3
Q ss_pred ccccCCCC-----CCCccEEEEeecCCc---cccCCCCCcccEEEeccC----------CCcCCccEEEeccCCCCCCCc
Q 047894 881 LSGELPEL-----LPSLETLVVSKCGKL---VVPLSCYPMLCRLEVDEC----------KELANLRSLLICNSTALKSLP 942 (1087)
Q Consensus 881 l~~~~p~~-----l~~L~~L~l~~~~~~---~~~~~~~~~L~~l~~~~~----------~~l~~L~~L~l~~~~~~~~~~ 942 (1087)
+.+.+|.. +++|++|++++|... ...+..+++|+.+++..+ ..+++|++|++++|.+.+.+|
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 33333321 334555555554211 112233444444444322 234455555555555554555
Q ss_pred hhhhcCCCCCceEEeccCCCCcccccC-CCCCCCCEEE-------------EecccCccccccccCCCCCCCCCCCCCCC
Q 047894 943 EEMMENNSQLEKLYIRDCESLTFIARR-RLPASLKRLE-------------IENCEKLQRLFDDEGDASSSSPSSSSSPV 1008 (1087)
Q Consensus 943 ~~~~~~l~~L~~L~l~~c~~l~~~~~~-~l~~~L~~L~-------------l~~c~~L~~l~l~~n~~~~~~~~~~~~l~ 1008 (1087)
..+ ..+++|+.|++++|.....+|.. .-.++|+.|+ +..+++|+.|++++|.+.+.+|..+..++
T Consensus 460 ~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 460 QEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp GGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred HHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 443 34555555555555433222210 0011222222 22345566666666666666666666666
Q ss_pred CccEEEEeccCCCcccCCC-------------------------------------------------------------
Q 047894 1009 MLQLLRIENCRKLESIPDG------------------------------------------------------------- 1027 (1087)
Q Consensus 1009 ~L~~L~l~~~~~~~~~p~~------------------------------------------------------------- 1027 (1087)
+|++|++++|++.+.+|..
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 6666666666655444422
Q ss_pred ---------CCCCCCccEEEEecCCCCcccCC-CCCCCCcCeEEEccCCCCCCCCCCCCCCCCCCcEEeC
Q 047894 1028 ---------LPNLKCLQSICIRKCPSLVSFPE-RGLPNTISAVYICECDKLEAPPNDMHKLNSLQSLSIK 1087 (1087)
Q Consensus 1028 ---------l~~l~~L~~L~l~~c~~l~~lp~-~~~~~sL~~L~i~~c~~l~~~p~~l~~l~~L~~l~i~ 1087 (1087)
+..+++|+.|++++|..-..+|. .+..++|+.|++++|.....+|..+.++++|+.|+++
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 22345566666666433234443 2234577888888777666778778888888888775
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-33 Score=346.90 Aligned_cols=301 Identities=16% Similarity=0.137 Sum_probs=155.8
Q ss_pred CCCCCcccEEEeccCCC-CCCCCcCCcccC-cccEEeeeCCCCCCCCC-CCCC--cCCcceeeccCCCCceeeccccccC
Q 047894 757 QPHKCIKKVAIRNYGGA-RFPLWIGDPLFC-KIELLELENCDNCVSLP-SLGR--LSSLKHLAVKGLKKLKSIESEVYGE 831 (1087)
Q Consensus 757 ~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~-~L~~L~L~~~~~~~~l~-~l~~--l~~L~~L~L~~~~~l~~~~~~~~~~ 831 (1087)
...++|+.|.++++... .+|.++.. ++ +|+.|++++|...+.+| .+.. +++|++|++++|.....++..+.
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-- 415 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-- 415 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHH--HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG--
T ss_pred hcCCCCCEEeCcCCccCccccHHHHh--hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh--
Confidence 34455666666655433 44554432 33 56666666665544333 3333 55666666666543323332222
Q ss_pred CcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCC---CCCCccEEEEeecCCc---cc
Q 047894 832 GFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPE---LLPSLETLVVSKCGKL---VV 905 (1087)
Q Consensus 832 ~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~~---~~ 905 (1087)
.+++|+.|++++...-...... ...+++|+.|++.+| .+.+.+|. .+++|++|++++|... ..
T Consensus 416 ----~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 416 ----NCSELVSLHLSFNYLSGTIPSS------LGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp ----GCTTCCEEECCSSEEESCCCGG------GGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ----cCCCCCEEECcCCcccCcccHH------HhcCCCCCEEECCCC-cccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 2556666666553211111100 123556666666666 45445553 3456666666666322 11
Q ss_pred cCCCCCcccEEEecc----------CCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCC-CC
Q 047894 906 PLSCYPMLCRLEVDE----------CKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLP-AS 974 (1087)
Q Consensus 906 ~~~~~~~L~~l~~~~----------~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~-~~ 974 (1087)
.+..+++|+.+++.. +..+++|++|++++|.+.+.+|..+ ..+++|+.|++++|+....+|..... ..
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEECCCCccCCcCChHHhcccc
Confidence 233445555555543 2356688888888888877777765 57888888888888755444432100 00
Q ss_pred C---------CEE--------------------------------------------------EEecccCccccccccCC
Q 047894 975 L---------KRL--------------------------------------------------EIENCEKLQRLFDDEGD 995 (1087)
Q Consensus 975 L---------~~L--------------------------------------------------~l~~c~~L~~l~l~~n~ 995 (1087)
+ +.. .+.++++|+.|++++|+
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 0 000 12223445555555555
Q ss_pred CCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCC-CCCCCCcCeEEEccCCCCCCCCC
Q 047894 996 ASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPE-RGLPNTISAVYICECDKLEAPPN 1073 (1087)
Q Consensus 996 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~~sL~~L~i~~c~~l~~~p~ 1073 (1087)
+++.+|..+..+++|+.|++++|.+.+.+|..+.++++|++|++++|..-..+|. .+.+++|+.|++++|+....+|+
T Consensus 644 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 5555555555555555555555555555555555555555555555332223433 12234555555555554444443
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-31 Score=327.15 Aligned_cols=522 Identities=16% Similarity=0.073 Sum_probs=258.7
Q ss_pred CCCcceEEEEEeccCCccccccccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccCc-cc
Q 047894 519 GFERARHSSYARDWCDGRNKFEVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELPI-PF 597 (1087)
Q Consensus 519 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp~-~i 597 (1087)
.+..++++.+........ ....+.++++|++|.+..+.. ....+..|.++++|++|+|++|.+..+|. .|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTI--------SKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp SCTTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCC--------CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCcc--------CccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence 445566666654432211 122355566666665543321 11223445566667777776666666654 36
Q ss_pred cCCccceeeccCCCcCcccc-cccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCCccccccCcc---CCCCCC
Q 047894 598 EELRLLRFLNLADIDIKSLP-ESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKLLKEMPCG---MKELKK 673 (1087)
Q Consensus 598 ~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~---i~~L~~ 673 (1087)
+++.+|++|++++|.++.+| ..++++++|++|++++|......|..+.++++|++|++++|. +..++.. ...+++
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSS 172 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcccccc
Confidence 66667777777766666664 456666677777776665444445556666677777766665 3333322 223455
Q ss_pred CCccCeeeeCccCC-CCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHh
Q 047894 674 LRTLSNFIVGKRET-ASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHV 752 (1087)
Q Consensus 674 L~~L~~~~~~~~~~-~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 752 (1087)
|+.|+...+..... +..+..+..|..+ .+....-...........+ ...+|+.|+++++......
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L----~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~--------- 238 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGL----FLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTS--------- 238 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEE----ECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEEC---------
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhh----hccccccChhhHHHHHHHh-hhccccEEEccCCcccccC---------
Confidence 55554332221110 1112222222221 1111000000000011111 2245555555443221100
Q ss_pred hhccCCC--CCcccEEEeccCCCCCC-CCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeeccc-
Q 047894 753 LDILQPH--KCIKKVAIRNYGGARFP-LWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIESE- 827 (1087)
Q Consensus 753 l~~l~~~--~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~- 827 (1087)
...+... ++|+.|.++++.....+ .++.. +++|+.|++++|......| .++.+++|+.|+++++..-..+...
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred hhHhhccCcCCCCEEECCCCCcCccCcccccC--cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 0001111 23555555554433332 23332 4555555555555443333 4555555555555443111000000
Q ss_pred --cccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCC-ccccCCC------CCCCccEEEEe
Q 047894 828 --VYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPK-LSGELPE------LLPSLETLVVS 898 (1087)
Q Consensus 828 --~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~p~------~l~~L~~L~l~ 898 (1087)
.........+++|+.|++++...-...... ...+++|+.|++++|.- +. .++. ..++|+.|+++
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~Ls~n~~~~~-~l~~~~f~~~~~~~L~~L~L~ 389 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM------FTGLINLKYLSLSNSFTSLR-TLTNETFVSLAHSPLHILNLT 389 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT------TTTCTTCCEEECTTCBSCCC-EECTTTTGGGTTSCCCEEECT
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhH------hccccCCcEEECCCCchhhh-hcchhhhcccccCcCceEECC
Confidence 000000112444444444432211100000 12244555555554420 11 1110 01345555554
Q ss_pred ecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccC--CCCCCCC
Q 047894 899 KCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARR--RLPASLK 976 (1087)
Q Consensus 899 ~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~l~~~L~ 976 (1087)
+|. +..+....+..+++|++|++++|.+...++...+..+++|+.|++++|.... ++.. ...++|+
T Consensus 390 ~n~-----------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 390 KNK-----------ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQ 457 (680)
T ss_dssp TSC-----------CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE-CCTTTTTTCTTCC
T ss_pred CCC-----------CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce-eChhhhhcCcccc
Confidence 442 1122222344556666677766665554553334566666666666665221 1111 1123455
Q ss_pred EEEEe---------------cccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccC--------CCCCCCCC
Q 047894 977 RLEIE---------------NCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIP--------DGLPNLKC 1033 (1087)
Q Consensus 977 ~L~l~---------------~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p--------~~l~~l~~ 1033 (1087)
.|.+. +|++|+.|++++|++++..+..+..+++|++|++++|.+....+ ..+.++++
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~ 537 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCC
Confidence 55443 45778889999999988777778889999999999998764321 23778899
Q ss_pred ccEEEEecCCCCcccCCCCC--CCCcCeEEEccCCCCCCCCC-CCCCCCCCCcEEeC
Q 047894 1034 LQSICIRKCPSLVSFPERGL--PNTISAVYICECDKLEAPPN-DMHKLNSLQSLSIK 1087 (1087)
Q Consensus 1034 L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~~l~~~p~-~l~~l~~L~~l~i~ 1087 (1087)
|++|++++ +.++.+|...+ .++|+.|++++|.. +.+|. .+..+++|+.|+++
T Consensus 538 L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 538 LHILNLES-NGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECT
T ss_pred CCEEECCC-CCCCCCCHHHcccccCcceeECCCCCC-CcCCHhHhCCCCCCCEEECC
Confidence 99999988 46778886433 46899999988764 44544 46788888888874
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=7.3e-31 Score=318.93 Aligned_cols=502 Identities=17% Similarity=0.104 Sum_probs=264.8
Q ss_pred cCCCCCcceEEEEEeccCCccccccccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCccc-C
Q 047894 516 SSRGFERARHSSYARDWCDGRNKFEVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGEL-P 594 (1087)
Q Consensus 516 ~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~l-p 594 (1087)
+...+...+++.+........ ....+.++++|++|.+.++.. ..+.+..|.++++|++|++++|.+..+ |
T Consensus 28 P~~l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 28 PGTLPNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQI--------YWIHEDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp CTTSCTTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred cCCCCCcCcEEEccCCccCcC-ChhHhccCccceEEECCCCcc--------ceeChhhccCccccCeeeCCCCcccccCh
Confidence 344566777777765443221 123566778888887665432 223455677888888888888888665 6
Q ss_pred ccccCCccceeeccCCCcCccc-ccccccCCCCcEEEecCCCCCccc--CcccCCCCCcCEEeecCCcccccc-CccCCC
Q 047894 595 IPFEELRLLRFLNLADIDIKSL-PESTCKLLNLEILILRNCSRLIKL--PPKMRNLINLNHLDIRGAKLLKEM-PCGMKE 670 (1087)
Q Consensus 595 ~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~ 670 (1087)
..|+++.+|++|++++|.++.+ |..++++++|++|++++|. +..+ |. +..+++|++|++++|. +..+ |..++.
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 175 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNA-IHYLSKEDMSS 175 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSC-CCEECHHHHHT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCc-ccccChhhhhh
Confidence 6788888888888888888877 5678888888888888876 4443 44 4458888888888887 4444 445777
Q ss_pred CCCCCc--cCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhh
Q 047894 671 LKKLRT--LSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAV 748 (1087)
Q Consensus 671 L~~L~~--L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 748 (1087)
+++|+. |+...+.........-....|+.+ .+...... ...+..+.++....+....... ......
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L-------~l~~~~~~----~~~~~~l~~~~l~~l~~~~~~~-~~~~~i 243 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL-------NFGGTQNL----LVIFKGLKNSTIQSLWLGTFED-MDDEDI 243 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTTTCEEEEE-------ECTTCSCH----HHHHHHTTTCEEEEEECCCCTT-SCCCCC
T ss_pred hcccceeEEecCCCccCccChhHhhhcccccc-------ccCCchhH----HHHhhhccccchhheechhhcc-cccccc
Confidence 777773 322211111111111111112211 11111111 1222223333333332211110 000011
Q ss_pred HHHhhhccCCCCCcccEEEeccCCCCCCCC-cCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeecc
Q 047894 749 EEHVLDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIES 826 (1087)
Q Consensus 749 ~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~ 826 (1087)
....+..+.+. .++.|.++++....++.. +.. +++|+.|++++|.+. .+| .++.+++|++|+++++......+.
T Consensus 244 ~~~~~~~l~~~-~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 244 SPAVFEGLCEM-SVESINLQKHYFFNISSNTFHC--FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CGGGGGGGGGS-EEEEEECTTCCCSSCCTTTTTT--CTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred ChhHhchhhcC-ceeEEEeecCccCccCHHHhcc--ccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh
Confidence 11222222222 466666666655555443 333 667777777776654 333 566677777777766532211111
Q ss_pred ccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccC--C---CCCCCccEEEEeecC
Q 047894 827 EVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGEL--P---ELLPSLETLVVSKCG 901 (1087)
Q Consensus 827 ~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--p---~~l~~L~~L~l~~~~ 901 (1087)
.+ ..+++|+.|.+.+.......... ....+++|+.|++++| .+.+.. + ..+++|++|++++|.
T Consensus 320 ~~------~~l~~L~~L~l~~n~~~~~~~~~-----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 320 SA------SNFPSLTHLSIKGNTKRLELGTG-----CLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp CG------GGCTTCSEEECCSCSSCCBCCSS-----TTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred hh------hccCcCCEEECCCCCcccccchh-----hhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCc
Confidence 11 22666666666654322111100 0123566677776666 443221 1 345666666666653
Q ss_pred Cccc---cCCCCCcccEEEecc-----------CCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccc
Q 047894 902 KLVV---PLSCYPMLCRLEVDE-----------CKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIA 967 (1087)
Q Consensus 902 ~~~~---~~~~~~~L~~l~~~~-----------~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 967 (1087)
.... .+..+++|+.+++.. +..+++|++|++++|.+....+..+ ..+++|+.|++++|.......
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-DGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT-TTCTTCCEEECTTCBCGGGEE
T ss_pred CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH-hCCCCCCEEECCCCCCCcccc
Confidence 2111 122233333333321 3344566666666666544434332 456666666666665221000
Q ss_pred cCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcc
Q 047894 968 RRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVS 1047 (1087)
Q Consensus 968 ~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~ 1047 (1087)
. .+. .+..+++|+.|++++|.+++..|..+..+++|++|++++|++.+..|..+.++++| .|++++| .++.
T Consensus 467 ~--~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~ 537 (606)
T 3t6q_A 467 Q--KTN-----SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISI 537 (606)
T ss_dssp C--SSC-----GGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCC
T ss_pred c--cch-----hhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccc
Confidence 0 000 23445666666666666666666666666777777777776666666666666777 6777663 4444
Q ss_pred cCCCCC--CCCcCeEEEccCCC
Q 047894 1048 FPERGL--PNTISAVYICECDK 1067 (1087)
Q Consensus 1048 lp~~~~--~~sL~~L~i~~c~~ 1067 (1087)
++...+ .++|+.|++++|+.
T Consensus 538 ~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 538 ILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCGGGHHHHHTSSEEECTTCCE
T ss_pred cCHhhcccCCCCCEEeCCCCCc
Confidence 443221 24667777766653
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.9e-30 Score=316.06 Aligned_cols=506 Identities=16% Similarity=0.126 Sum_probs=294.7
Q ss_pred CcceEEEEEeccCCccccccccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccC-ccccC
Q 047894 521 ERARHSSYARDWCDGRNKFEVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELP-IPFEE 599 (1087)
Q Consensus 521 ~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp-~~i~~ 599 (1087)
...+++.+....... .....+.++++|+.|.+.++.. ..+.+..|.++++|++|++++|.+..+| ..|++
T Consensus 49 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l--------~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 119 (680)
T 1ziw_A 49 SQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNEL--------SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119 (680)
T ss_dssp TTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCC--------CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT
T ss_pred CcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCcc--------CccChhhhccCCCCCEEECCCCccCccChhHccc
Confidence 456777765543222 1234567889999998765532 1334456889999999999999998886 67999
Q ss_pred CccceeeccCCCcCccc-ccccccCCCCcEEEecCCCCCcccCc-cc--CCCCCcCEEeecCCccccccCccCCCCCCCC
Q 047894 600 LRLLRFLNLADIDIKSL-PESTCKLLNLEILILRNCSRLIKLPP-KM--RNLINLNHLDIRGAKLLKEMPCGMKELKKLR 675 (1087)
Q Consensus 600 l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i--~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 675 (1087)
+.+|++|++++|.++.. |..++++++|++|++++|. +..++. .+ ..+++|++|++++|......|..+..+.+|+
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEEC
T ss_pred cCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhh
Confidence 99999999999999865 5678999999999999987 455543 33 4678999999999984333444577777777
Q ss_pred ccCeeeeCccCCCCCcc------ccccccccccceeecCcccCCChhhHHHHhccCC--CCCCeeEEEeeCCCCCCcchh
Q 047894 676 TLSNFIVGKRETASGLE------DLKCLNFLCDELCIAGLENVNNLQNAREAALCEK--HNLEALTLDWVSQFGNSRDVA 747 (1087)
Q Consensus 676 ~L~~~~~~~~~~~~~~~------~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~ 747 (1087)
.|........ ..... ....|+.+ .+. . +.........+..+ .+|+.|+++++.....
T Consensus 199 ~L~l~~~~l~--~~~~~~~~~~l~~~~L~~L----~L~---~-n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~----- 263 (680)
T 1ziw_A 199 GLFLNNVQLG--PSLTEKLCLELANTSIRNL----SLS---N-SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV----- 263 (680)
T ss_dssp EEECTTCCCH--HHHHHHHHHHHTTSCCCEE----ECT---T-SCCCEECTTTTGGGGGSCCCEEECTTSCCCEE-----
T ss_pred hhhccccccC--hhhHHHHHHHhhhccccEE----Ecc---C-CcccccChhHhhccCcCCCCEEECCCCCcCcc-----
Confidence 7643221110 00000 01222222 111 1 11111112233333 3599999987653211
Q ss_pred hHHHhhhccCCCCCcccEEEeccCCCCC-CCCcCCcccCcccEEeeeCCCCCC-----CCC-----CCCCcCCcceeecc
Q 047894 748 VEEHVLDILQPHKCIKKVAIRNYGGARF-PLWIGDPLFCKIELLELENCDNCV-----SLP-----SLGRLSSLKHLAVK 816 (1087)
Q Consensus 748 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~-----~l~-----~l~~l~~L~~L~L~ 816 (1087)
....+...++|+.|.++++..... |.++.. +++|+.|++++|.... .+| .++.+++|++|+++
T Consensus 264 ----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 264 ----GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG--LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp ----CTTTTTTCTTCCEEECCSCCBSEECTTTTTT--CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred ----CcccccCcccccEeeCCCCccCccChhhhcC--CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 113355678899999998766544 456655 8999999999875432 333 57889999999999
Q ss_pred CCCCceeeccccccCCcccCCCCccEeecccccc-----------------cc---ccccccccccc--cccCCcccEEE
Q 047894 817 GLKKLKSIESEVYGEGFSMPFPSLEILSFENLAE-----------------WE---HWDTDIKGNVH--VEIFPRLHKLS 874 (1087)
Q Consensus 817 ~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~-----------------l~---~~~~~~~~~~~--~~~~~~L~~L~ 874 (1087)
++.. ..++... ...+++|+.|++++... ++ ...+.+.+..+ ...+++|+.|+
T Consensus 338 ~n~l-~~~~~~~-----~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 338 DNDI-PGIKSNM-----FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp SCCB-CCCCTTT-----TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCcc-CCCChhH-----hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 8743 2222221 23388999999876421 10 11111111111 12244555555
Q ss_pred EecCCCccccCC----CCCCCccEEEEeecCCccc---cCCCCCcccEEEecc------------CCCcCCccEEEeccC
Q 047894 875 IVECPKLSGELP----ELLPSLETLVVSKCGKLVV---PLSCYPMLCRLEVDE------------CKELANLRSLLICNS 935 (1087)
Q Consensus 875 l~~c~~l~~~~p----~~l~~L~~L~l~~~~~~~~---~~~~~~~L~~l~~~~------------~~~l~~L~~L~l~~~ 935 (1087)
+.+| .+.+.+| ..+++|++|++++|..... .+..+++|+.+.+.. +..+++|++|++++|
T Consensus 412 L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 412 LGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490 (680)
T ss_dssp CCSS-CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred CCCC-cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence 5555 3332232 2345555555555532111 122344455554432 223445566666665
Q ss_pred CCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEE
Q 047894 936 TALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRI 1015 (1087)
Q Consensus 936 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l 1015 (1087)
.+.. ++...+..+++|+.|++++|. ++.++...+|.. ....+.++++|+.|++++|.++...+..|..+++|++|++
T Consensus 491 ~l~~-i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 491 NIAN-INDDMLEGLEKLEILDLQHNN-LARLWKHANPGG-PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CCCC-CCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTS-CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCc-CChhhhccccccCEEeCCCCC-ccccchhhccCC-cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 5433 332223455666666666554 222221111100 0001345567777777777777554555677777777777
Q ss_pred eccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCC---CCCCcCeEEEccCCCC
Q 047894 1016 ENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERG---LPNTISAVYICECDKL 1068 (1087)
Q Consensus 1016 ~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~---~~~sL~~L~i~~c~~l 1068 (1087)
++|.+....+..+.++++|+.|++++| .++.++... ..++|+.|++++|+-.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 777766444445667777777777773 566666532 2357777777776543
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=315.09 Aligned_cols=511 Identities=14% Similarity=0.091 Sum_probs=258.8
Q ss_pred CCCcceEEEEEeccCCccccccccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCccc-Cccc
Q 047894 519 GFERARHSSYARDWCDGRNKFEVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGEL-PIPF 597 (1087)
Q Consensus 519 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~l-p~~i 597 (1087)
.+...+++.+..+..... ....+..+++|+.|.+.++.. ...+.+..|.++++|++|+|++|.+..+ |..|
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~-------~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYT-------PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCC-------CCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCC-------ccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 556677777665432211 123455666677766544321 1223344567777777777777777555 6667
Q ss_pred cCCccceeeccCCCcCcc-cccc--cccCCCCcEEEecCCCCCccc-CcccCCCCCcCEEeecCCccccccCccCCCC--
Q 047894 598 EELRLLRFLNLADIDIKS-LPES--TCKLLNLEILILRNCSRLIKL-PPKMRNLINLNHLDIRGAKLLKEMPCGMKEL-- 671 (1087)
Q Consensus 598 ~~l~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L-- 671 (1087)
+++.+|++|+|++|.++. +|.. ++++++|++|+|++|...... +..++++++|++|++++|......|..++.+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 777777777777777664 4443 677777777777776533322 2456777777777777776333344445554
Q ss_pred CCCCccCeeeeCccC-CCCCcccccc-ccccccceeecCcccCCChhhHHHHh---ccCCCCCCeeEEEeeCCCCCCc--
Q 047894 672 KKLRTLSNFIVGKRE-TASGLEDLKC-LNFLCDELCIAGLENVNNLQNAREAA---LCEKHNLEALTLDWVSQFGNSR-- 744 (1087)
Q Consensus 672 ~~L~~L~~~~~~~~~-~~~~~~~L~~-L~~L~~~l~i~~l~~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~-- 744 (1087)
++|+.|....+.... .+..+..+.. +... .+....+... ......... ......+..|.+..........
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNM--VLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTC--CBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CccceEECCCCccccccccchhhcCCccccC--ceeEEecCCC-cCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 566666443322111 0111111111 0000 0011111110 000000000 1112344444443111000000
Q ss_pred -chhhHHHhhhccCCCCCcccEEEeccCCCCC-CCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCc
Q 047894 745 -DVAVEEHVLDILQPHKCIKKVAIRNYGGARF-PLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKL 821 (1087)
Q Consensus 745 -~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l 821 (1087)
........+..+ .+++++.|.++++....+ |.++.. +++|+.|++++|.+....+ .++.+++|++|+|+++..-
T Consensus 251 ~l~~~~~~~f~~l-~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 251 NIKDPDQNTFAGL-ARSSVRHLDLSHGFVFSLNSRVFET--LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SSTTGGGTTTTTT-TTSCCCEEECTTCCCCEECSCCSSS--CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred ccCCCChhhhhcc-ccCCccEEECCCCcccccChhhhhc--CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence 000111111111 135677777776655444 333443 6777888888777655444 5777777888877776422
Q ss_pred eeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCCCCccEEEEeecC
Q 047894 822 KSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSLETLVVSKCG 901 (1087)
Q Consensus 822 ~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~ 901 (1087)
...+..+ ..+++|+.|++++.. +...... ....+++|+.|++++| .++ .++. +++|+.|.+++|.
T Consensus 328 ~~~~~~~------~~l~~L~~L~L~~N~-i~~~~~~-----~~~~l~~L~~L~Ls~N-~l~-~i~~-~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 328 ELYSSNF------YGLPKVAYIDLQKNH-IAIIQDQ-----TFKFLEKLQTLDLRDN-ALT-TIHF-IPSIPDIFLSGNK 392 (844)
T ss_dssp CCCSCSC------SSCTTCCEEECCSCC-CCCCCSS-----CSCSCCCCCEEEEETC-CSC-CCSS-CCSCSEEEEESCC
T ss_pred ccCHHHh------cCCCCCCEEECCCCC-CCccChh-----hhcCCCCCCEEECCCC-CCC-cccC-CCCcchhccCCCC
Confidence 1111111 236777777776642 1111100 0233677777777777 554 3333 6777777777764
Q ss_pred CccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEe
Q 047894 902 KLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIE 981 (1087)
Q Consensus 902 ~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~ 981 (1087)
-...+ ....+++.|++++|.+...-...++..+++|+.|++++|.. ...+.... +.
T Consensus 393 l~~l~---------------~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~--------~~ 448 (844)
T 3j0a_A 393 LVTLP---------------KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF-SSCSGDQT--------PS 448 (844)
T ss_dssp CCCCC---------------CCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC-CCCCSSSS--------SC
T ss_pred ccccc---------------ccccccceeecccCccccCchhhhhhcCCccceeeCCCCcc-cccccccc--------cc
Confidence 22111 11235666666666654432222334566777777776652 21111111 12
Q ss_pred cccCccccccccCCCC-----CCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCC
Q 047894 982 NCEKLQRLFDDEGDAS-----SSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNT 1056 (1087)
Q Consensus 982 ~c~~L~~l~l~~n~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~s 1056 (1087)
.+++|+.|++++|.++ +..+..+..+++|++|++++|.+.+..|..+.++++|++|++++ ++++.+|...++++
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~ 527 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS-NRLTVLSHNDLPAN 527 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES-CCCSSCCCCCCCSC
T ss_pred cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC-CCCCccChhhhhcc
Confidence 2455566666666554 22334455566666666666666655555566666666666666 35666666555566
Q ss_pred cCeEEEccCCCCCCCCCCCCCCCCCCcEEe
Q 047894 1057 ISAVYICECDKLEAPPNDMHKLNSLQSLSI 1086 (1087)
Q Consensus 1057 L~~L~i~~c~~l~~~p~~l~~l~~L~~l~i 1086 (1087)
|+.|++++|......|..+ .+|+.|++
T Consensus 528 L~~L~Ls~N~l~~~~~~~~---~~L~~l~l 554 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPDVF---VSLSVLDI 554 (844)
T ss_dssp CCEEEEEEECCCCCCSCCC---SSCCEEEE
T ss_pred ccEEECCCCcCCCCChhHh---CCcCEEEe
Confidence 6666666665544444433 24445443
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=5.9e-30 Score=310.93 Aligned_cols=463 Identities=16% Similarity=0.065 Sum_probs=323.1
Q ss_pred CcceEEEEEeccCCccccccccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccC-ccccC
Q 047894 521 ERARHSSYARDWCDGRNKFEVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELP-IPFEE 599 (1087)
Q Consensus 521 ~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp-~~i~~ 599 (1087)
...+++.+........ ....+.++++|+.|.+.++.. ....+..|.++++|++|++++|.+..+| ..|++
T Consensus 56 ~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l--------~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 126 (606)
T 3vq2_A 56 SELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPI--------QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126 (606)
T ss_dssp TTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC--------CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTT
T ss_pred ccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcc--------cccChhhcCCcccCCEEEccCCccccccccccCC
Confidence 4567776654432211 123467888999998765532 2233566889999999999999998876 77999
Q ss_pred CccceeeccCCCcCc--ccccccccCCCCcEEEecCCCCCcccCcccCCCCCcC----EEeecCCccccccCccCCCCCC
Q 047894 600 LRLLRFLNLADIDIK--SLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLN----HLDIRGAKLLKEMPCGMKELKK 673 (1087)
Q Consensus 600 l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~----~L~l~~~~~~~~~p~~i~~L~~ 673 (1087)
+.+|++|++++|.++ .+|..++++++|++|++++|......|..+..+.+|+ +|++++|. +..+|.+.....+
T Consensus 127 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~ 205 (606)
T 3vq2_A 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIK 205 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTCE
T ss_pred CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcccccCce
Confidence 999999999999988 5799999999999999999874444455666666554 78888887 5666666555556
Q ss_pred CCccCeeeeCccC--CCCCcccccccccccc-------------------------ceeecCcccCCChhhHHHHhccCC
Q 047894 674 LRTLSNFIVGKRE--TASGLEDLKCLNFLCD-------------------------ELCIAGLENVNNLQNAREAALCEK 726 (1087)
Q Consensus 674 L~~L~~~~~~~~~--~~~~~~~L~~L~~L~~-------------------------~l~i~~l~~~~~~~~~~~~~l~~~ 726 (1087)
|+.|+...+.... .+..+..++.+..+.. .+....+...+...+.... +..+
T Consensus 206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l 284 (606)
T 3vq2_A 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCL 284 (606)
T ss_dssp EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGG
T ss_pred eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccC
Confidence 7776544332110 0001122222221100 0111111111222222222 6778
Q ss_pred CCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCC
Q 047894 727 HNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGR 806 (1087)
Q Consensus 727 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 806 (1087)
.+|+.|++.++.... +..+...++|+.|.+.++....+|.+ . +++|+.|++++|...... .++.
T Consensus 285 ~~L~~L~l~~~~~~~-----------l~~l~~~~~L~~L~l~~n~l~~lp~~--~--l~~L~~L~l~~n~~~~~~-~~~~ 348 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKY-----------LEDVPKHFKWQSLSIIRCQLKQFPTL--D--LPFLKSLTLTMNKGSISF-KKVA 348 (606)
T ss_dssp TTCSEEEEESCCCCC-----------CCCCCTTCCCSEEEEESCCCSSCCCC--C--CSSCCEEEEESCSSCEEC-CCCC
T ss_pred CCCCEEEecCccchh-----------hhhccccccCCEEEcccccCcccccC--C--CCccceeeccCCcCccch-hhcc
Confidence 899999998765422 22566778999999999998889966 3 899999999999765544 6789
Q ss_pred cCCcceeeccCCCCceee---ccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccc
Q 047894 807 LSSLKHLAVKGLKKLKSI---ESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSG 883 (1087)
Q Consensus 807 l~~L~~L~L~~~~~l~~~---~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 883 (1087)
+++|++|+++++. +... +..+ ..+++|+.|++++...- ..... ...+++|+.|++.+| ++.+
T Consensus 349 l~~L~~L~ls~n~-l~~~~~~~~~~------~~~~~L~~L~L~~n~l~-~~~~~------~~~l~~L~~L~l~~n-~l~~ 413 (606)
T 3vq2_A 349 LPSLSYLDLSRNA-LSFSGCCSYSD------LGTNSLRHLDLSFNGAI-IMSAN------FMGLEELQHLDFQHS-TLKR 413 (606)
T ss_dssp CTTCCEEECCSSC-EEEEEECCHHH------HCCSCCCEEECCSCSEE-EECCC------CTTCTTCCEEECTTS-EEES
T ss_pred CCCCCEEECcCCc-cCCCcchhhhh------ccCCcccEeECCCCccc-cchhh------ccCCCCCCeeECCCC-ccCC
Confidence 9999999999874 3332 2222 23899999999886522 11111 244899999999998 5654
Q ss_pred cCC----CCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCC-CchhhhcCCCCCceEEec
Q 047894 884 ELP----ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKS-LPEEMMENNSQLEKLYIR 958 (1087)
Q Consensus 884 ~~p----~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~ 958 (1087)
..| ..+++|++|++++|.... .....+.++++|++|++++|.+... .|.. +..+++|+.|+++
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKI-----------DFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLS 481 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEE-----------CCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECT
T ss_pred ccChhhhhccccCCEEECcCCCCCc-----------cchhhhcCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECC
Confidence 444 357899999999885322 2223456788999999999997764 4444 4689999999999
Q ss_pred cCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCC-CccEE
Q 047894 959 DCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLK-CLQSI 1037 (1087)
Q Consensus 959 ~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L 1037 (1087)
+|......+. .+.++++|+.|++++|++++..|..+..+++|++|++++|++. .+|..+..++ +|++|
T Consensus 482 ~n~l~~~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 482 KCQLEQISWG----------VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF 550 (606)
T ss_dssp TSCCCEECTT----------TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred CCcCCccChh----------hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence 9974332221 2556789999999999999988999999999999999999976 7777788887 69999
Q ss_pred EEecCCCCccc
Q 047894 1038 CIRKCPSLVSF 1048 (1087)
Q Consensus 1038 ~l~~c~~l~~l 1048 (1087)
++++||.....
T Consensus 551 ~l~~N~~~c~c 561 (606)
T 3vq2_A 551 NLTNNSVACIC 561 (606)
T ss_dssp ECCSCCCCCSS
T ss_pred EccCCCcccCC
Confidence 99997755433
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=305.23 Aligned_cols=489 Identities=16% Similarity=0.107 Sum_probs=264.1
Q ss_pred CCCCcceEEEEEeccCCccccccccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccC-cc
Q 047894 518 RGFERARHSSYARDWCDGRNKFEVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELP-IP 596 (1087)
Q Consensus 518 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp-~~ 596 (1087)
..+...+++.+........ ....+..+++|+.|.+.++.. ..+.+..|.++++|++|++++|.+..+| ..
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i--------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SSCSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcC--------CccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 4455677777655432211 122456677777777655432 1233455777888888888888877664 56
Q ss_pred ccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCCCCCc-ccCcccCCCCCcCEEeecCCcccccc-CccCCCCCC
Q 047894 597 FEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNCSRLI-KLPPKMRNLINLNHLDIRGAKLLKEM-PCGMKELKK 673 (1087)
Q Consensus 597 i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~ 673 (1087)
|+++.+|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|. +..+ |..++.+++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHT
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhc
Confidence 7888888888888888887765 67888888888888876333 367778888888888888877 4433 344666666
Q ss_pred C----CccCeeeeCccCCCC-CccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhh
Q 047894 674 L----RTLSNFIVGKRETAS-GLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAV 748 (1087)
Q Consensus 674 L----~~L~~~~~~~~~~~~-~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 748 (1087)
| ..|+........... .+..+ .|+.+ .+ .+...........+..+.+++.+.+.+............
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L----~l---~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL----TL---RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEE----EE---ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred cchhhhhcccCCCCceecCHHHhccC-cceeE----ec---ccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 6 333221111111011 11111 12221 11 111111123344555666666666654332211100000
Q ss_pred HHHhhhccCCCCCcccEEEecc--CCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeec
Q 047894 749 EEHVLDILQPHKCIKKVAIRNY--GGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIE 825 (1087)
Q Consensus 749 ~~~~l~~l~~~~~L~~L~l~~~--~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~ 825 (1087)
....+..+... .++.+.+.+. .....|.++.. +++|+.|++++|.... +| .+..+ +|++|+++++... .++
T Consensus 247 ~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~ 320 (570)
T 2z63_A 247 DKSALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNC--LTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFP 320 (570)
T ss_dssp CTTTTGGGGGS-EEEEEEEEETTEEESCSTTTTGG--GTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCC
T ss_pred chhhhcccccc-chhhhhhhcchhhhhhchhhhcC--cCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccC
Confidence 00111111111 2334444432 11223444443 6677777777776543 33 45555 7777777765322 221
Q ss_pred cccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccC--C---CCCCCccEEEEeec
Q 047894 826 SEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGEL--P---ELLPSLETLVVSKC 900 (1087)
Q Consensus 826 ~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--p---~~l~~L~~L~l~~~ 900 (1087)
. ..+++|+.|.+.+..... ..+...+++|+.|++++| .+.+.. | ..+++|++|++++|
T Consensus 321 ~--------~~l~~L~~L~l~~n~~~~--------~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 321 T--------LKLKSLKRLTFTSNKGGN--------AFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp B--------CBCSSCCEEEEESCBSCC--------BCCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred c--------ccccccCEEeCcCCcccc--------ccccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCC
Confidence 1 126666666666543211 111244667777777666 443211 1 24566677776665
Q ss_pred CCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEE
Q 047894 901 GKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEI 980 (1087)
Q Consensus 901 ~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l 980 (1087)
. +..+... +..+++|++|++++|.+....+...+..+++|+.|++++|......+. .+
T Consensus 384 ~-----------l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~ 441 (570)
T 2z63_A 384 G-----------VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----------IF 441 (570)
T ss_dssp S-----------EEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT----------TT
T ss_pred c-----------ccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh----------hh
Confidence 2 2222212 445566777777777655444433345667777777777653322221 13
Q ss_pred ecccCccccccccCCCC-CCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCC--CCCCc
Q 047894 981 ENCEKLQRLFDDEGDAS-SSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERG--LPNTI 1057 (1087)
Q Consensus 981 ~~c~~L~~l~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL 1057 (1087)
.++++|+.|++++|.++ +..|..+..+++|++|++++|.+.+..|..+.++++|++|++++| .++.+|... ..++|
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCC
Confidence 34566666666666665 345666667777777777777766665666777777777777764 455555432 23567
Q ss_pred CeEEEccCCCCCC
Q 047894 1058 SAVYICECDKLEA 1070 (1087)
Q Consensus 1058 ~~L~i~~c~~l~~ 1070 (1087)
+.|++++|+....
T Consensus 521 ~~L~l~~N~~~~~ 533 (570)
T 2z63_A 521 QKIWLHTNPWDCS 533 (570)
T ss_dssp CEEECCSSCBCCC
T ss_pred cEEEecCCcccCC
Confidence 7777777664433
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=5.7e-28 Score=303.02 Aligned_cols=490 Identities=14% Similarity=0.119 Sum_probs=341.2
Q ss_pred CcceEEEEEeccCCccccccccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcc-cCcc--c
Q 047894 521 ERARHSSYARDWCDGRNKFEVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGE-LPIP--F 597 (1087)
Q Consensus 521 ~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~-lp~~--i 597 (1087)
...+.+.+.............+.++++|++|.+.++.. ....++.|.++++|++|+|++|.+.. +|.. |
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l--------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI--------YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC--------CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC--------cccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 45677776554222111234577889999998765533 23346678999999999999999865 5555 9
Q ss_pred cCCccceeeccCCCcCccc--ccccccCCCCcEEEecCCCCCcccCcccCCC--CCcCEEeecCCccccccCccCCCCCC
Q 047894 598 EELRLLRFLNLADIDIKSL--PESTCKLLNLEILILRNCSRLIKLPPKMRNL--INLNHLDIRGAKLLKEMPCGMKELKK 673 (1087)
Q Consensus 598 ~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L--~~L~~L~l~~~~~~~~~p~~i~~L~~ 673 (1087)
+++.+|++|+|++|.++.+ +..++++++|++|+|++|......|..+..+ ++|+.|++++|......|..++++.+
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 199 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence 9999999999999999866 3579999999999999988666677888877 89999999999865666666666655
Q ss_pred ------CCccCeeeeCccC-CCCCcccc---ccccccccceeecCcc---cCCChhhHHHHhccCC--CCCCeeEEEeeC
Q 047894 674 ------LRTLSNFIVGKRE-TASGLEDL---KCLNFLCDELCIAGLE---NVNNLQNAREAALCEK--HNLEALTLDWVS 738 (1087)
Q Consensus 674 ------L~~L~~~~~~~~~-~~~~~~~L---~~L~~L~~~l~i~~l~---~~~~~~~~~~~~l~~~--~~L~~L~l~~~~ 738 (1087)
|+.|+...+.... ....+... ..+..+. +...... ............+..+ .+|+.|+++.+.
T Consensus 200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~--l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI--LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE--CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred ccccCceeEEecCCCcCchhHHHHHHhhcCccccccee--cccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 7777654432211 01111111 1111110 0000000 0111222222333333 689999997664
Q ss_pred CCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCC-CCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeecc
Q 047894 739 QFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF-PLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVK 816 (1087)
Q Consensus 739 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 816 (1087)
.... ....+...++|+.|.++++..... |..+.. +++|+.|++++|.+....+ .++.+++|+.|+++
T Consensus 278 l~~~---------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 278 VFSL---------NSRVFETLKDLKVLNLAYNKINKIADEAFYG--LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCEE---------CSCCSSSCCCCCEEEEESCCCCEECTTTTTT--CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred cccc---------ChhhhhcCCCCCEEECCCCcCCCCChHHhcC--CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 3211 123456778999999999887665 445554 8999999999999866555 78999999999999
Q ss_pred CCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCCCCccEEE
Q 047894 817 GLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSLETLV 896 (1087)
Q Consensus 817 ~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~ 896 (1087)
++. +..++... ...+++|+.|++++.. +.+ ...+++|+.|.+.+| +++ .+|....+++.|+
T Consensus 347 ~N~-i~~~~~~~-----~~~l~~L~~L~Ls~N~--------l~~---i~~~~~L~~L~l~~N-~l~-~l~~~~~~l~~L~ 407 (844)
T 3j0a_A 347 KNH-IAIIQDQT-----FKFLEKLQTLDLRDNA--------LTT---IHFIPSIPDIFLSGN-KLV-TLPKINLTANLIH 407 (844)
T ss_dssp SCC-CCCCCSSC-----SCSCCCCCEEEEETCC--------SCC---CSSCCSCSEEEEESC-CCC-CCCCCCTTCCEEE
T ss_pred CCC-CCccChhh-----hcCCCCCCEEECCCCC--------CCc---ccCCCCcchhccCCC-Ccc-cccccccccceee
Confidence 874 44443321 2338899999998743 332 123889999999999 776 7788788999999
Q ss_pred EeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCC
Q 047894 897 VSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLK 976 (1087)
Q Consensus 897 l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~ 976 (1087)
+++|.-.... . ...+.++++|++|++++|.+....+...+..+++|+.|++++|..-...+.+..+.
T Consensus 408 ls~N~l~~l~-----~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~--- 474 (844)
T 3j0a_A 408 LSENRLENLD-----I-----LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD--- 474 (844)
T ss_dssp CCSCCCCSST-----T-----HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS---
T ss_pred cccCccccCc-----h-----hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh---
Confidence 9987422110 0 01123678999999999997765444344568999999999987432222222222
Q ss_pred EEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCC
Q 047894 977 RLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNT 1056 (1087)
Q Consensus 977 ~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~s 1056 (1087)
.+.++++|+.|++++|.+++..+..+..+++|+.|++++|.+....|..+. ++|+.|++++ +.++.++...+ ++
T Consensus 475 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~-N~l~~~~~~~~-~~ 548 (844)
T 3j0a_A 475 --VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISR-NQLLAPNPDVF-VS 548 (844)
T ss_dssp --CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEE-ECCCCCCSCCC-SS
T ss_pred --hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCC-CcCCCCChhHh-CC
Confidence 356779999999999999999888899999999999999998765555554 8999999999 56777766554 58
Q ss_pred cCeEEEccCCCCC
Q 047894 1057 ISAVYICECDKLE 1069 (1087)
Q Consensus 1057 L~~L~i~~c~~l~ 1069 (1087)
|+.|++++|+-..
T Consensus 549 L~~l~l~~Np~~C 561 (844)
T 3j0a_A 549 LSVLDITHNKFIC 561 (844)
T ss_dssp CCEEEEEEECCCC
T ss_pred cCEEEecCCCccc
Confidence 9999999876443
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=4e-29 Score=303.61 Aligned_cols=472 Identities=15% Similarity=0.108 Sum_probs=272.2
Q ss_pred hcccCCCCcccEEEecCCCCccc-CccccCCccceeeccCCCcCccc-ccccccCCCCcEEEecCCCCCccc-CcccCCC
Q 047894 571 SDLLPKFKRLRMLSLQGYCIGEL-PIPFEELRLLRFLNLADIDIKSL-PESTCKLLNLEILILRNCSRLIKL-PPKMRNL 647 (1087)
Q Consensus 571 ~~~~~~~~~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L 647 (1087)
+..|.++++|++|+|++|.+..+ |..|+++.+|++|++++|.++.+ |..++++++|++|++++|. +..+ |..++++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l 128 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQ 128 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTC
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhccC
Confidence 44566777777777777776555 56677777777777777777654 5567777777777777765 3443 5556777
Q ss_pred CCcCEEeecCCccccccC-ccCCCCCCCCccCeeeeCccCC-CCCccccccccccccceeecCcccCCChhhHHHHhccC
Q 047894 648 INLNHLDIRGAKLLKEMP-CGMKELKKLRTLSNFIVGKRET-ASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCE 725 (1087)
Q Consensus 648 ~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~-~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 725 (1087)
++|++|++++|. +..++ +.+..+++|++|+...+..... +..+..++.|+.+ .+.+.+ +........ ...
T Consensus 129 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l--~L~l~~----n~l~~~~~~-~~~ 200 (606)
T 3t6q_A 129 KTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL--SLNLNG----NDIAGIEPG-AFD 200 (606)
T ss_dssp TTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE--EEECTT----CCCCEECTT-TTT
T ss_pred CcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee--EEecCC----CccCccChh-Hhh
Confidence 777777777776 43331 2233466666665433322110 0112233333211 011100 000000000 111
Q ss_pred CCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCC---CCCCC-CcCCcccCcccEEeeeCCCCCCCC
Q 047894 726 KHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGG---ARFPL-WIGDPLFCKIELLELENCDNCVSL 801 (1087)
Q Consensus 726 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~---~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l 801 (1087)
...|+.|++.++.. ....+..+.. ..+..+.+..... ..++. .+....-.+|+.|++++|......
T Consensus 201 ~~~L~~L~l~~~~~---------~~~~~~~l~~-~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 201 SAVFQSLNFGGTQN---------LLVIFKGLKN-STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp TCEEEEEECTTCSC---------HHHHHHHTTT-CEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred hccccccccCCchh---------HHHHhhhccc-cchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 22445555443220 0111111111 1122222222111 11111 111101127999999999886654
Q ss_pred C-CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCC
Q 047894 802 P-SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPK 880 (1087)
Q Consensus 802 ~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 880 (1087)
+ .++.+++|++|+++++. +..++..+ ..+++|+.|++.+...-.... .....+++|+.|++.+| .
T Consensus 271 ~~~~~~l~~L~~L~l~~n~-l~~lp~~l------~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n-~ 336 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATH-LSELPSGL------VGLSTLKKLVLSANKFENLCQ------ISASNFPSLTHLSIKGN-T 336 (606)
T ss_dssp TTTTTTCTTCSEEECTTSC-CSCCCSSC------CSCTTCCEEECTTCCCSBGGG------GCGGGCTTCSEEECCSC-S
T ss_pred HHHhccccCCCEEeccCCc-cCCCChhh------cccccCCEEECccCCcCcCch------hhhhccCcCCEEECCCC-C
Confidence 4 58999999999999874 44554433 238899999998754222111 11345899999999999 4
Q ss_pred ccccCC----CCCCCccEEEEeecCCccc-----cCCCCCcccEEEeccC----------CCcCCccEEEeccCCCCCCC
Q 047894 881 LSGELP----ELLPSLETLVVSKCGKLVV-----PLSCYPMLCRLEVDEC----------KELANLRSLLICNSTALKSL 941 (1087)
Q Consensus 881 l~~~~p----~~l~~L~~L~l~~~~~~~~-----~~~~~~~L~~l~~~~~----------~~l~~L~~L~l~~~~~~~~~ 941 (1087)
+.+.+| ..+++|++|++++|..... .+..+++|+.+++..+ ..+++|++|++++|.+....
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence 443444 3578999999999854322 2345566666655432 34556777777777655544
Q ss_pred chhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCC---CCCCCCCCCCccEEEEecc
Q 047894 942 PEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSS---SPSSSSSPVMLQLLRIENC 1018 (1087)
Q Consensus 942 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~---~~~~~~~l~~L~~L~l~~~ 1018 (1087)
+...+..+++|+.|++++|......+. .+.++++|+.|++++|.+++. .+..+..+++|++|++++|
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQ----------LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTT----------TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred cchhhhCcccCCEEECCCCccCCcCHH----------HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 444345667777777776653221111 134466777777888877663 2244677888888888888
Q ss_pred CCCcccCCCCCCCCCccEEEEecCCCCcccCCC--CCCCCcCeEEEccCCCCCCCCCCCCCCCCCCcEEeC
Q 047894 1019 RKLESIPDGLPNLKCLQSICIRKCPSLVSFPER--GLPNTISAVYICECDKLEAPPNDMHKLNSLQSLSIK 1087 (1087)
Q Consensus 1019 ~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~~l~~~p~~l~~l~~L~~l~i~ 1087 (1087)
.+.+..|..+.++++|++|++++| .++.++.. ...++| .|++++|......|..+..+++|+.|+++
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred ccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 887777778888888888888885 45544432 223567 88888887666666667778888888764
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=5.4e-29 Score=301.45 Aligned_cols=363 Identities=12% Similarity=0.104 Sum_probs=188.0
Q ss_pred CCcCcccccccccCCCCcEEEecCCCCCcc------------------cCcccC--CCCCcCEEeecCCccccccCccCC
Q 047894 610 DIDIKSLPESTCKLLNLEILILRNCSRLIK------------------LPPKMR--NLINLNHLDIRGAKLLKEMPCGMK 669 (1087)
Q Consensus 610 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~ 669 (1087)
+|.++.+|..++++++|++|+|++|. +.. +|..++ ++++|++|++++|.....+|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 34566688888888888888888877 444 888888 888888888888876677888888
Q ss_pred CCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhh-HHHHhc------cCCCCCCeeEEEeeCCCCC
Q 047894 670 ELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQN-AREAAL------CEKHNLEALTLDWVSQFGN 742 (1087)
Q Consensus 670 ~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~-~~~~~l------~~~~~L~~L~l~~~~~~~~ 742 (1087)
++++|++|+...+.. +.. ..+..+ ..+.+|+.|+++++... .
T Consensus 271 ~l~~L~~L~Ls~n~~------------------------------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 271 ALPEMQLINVACNRG------------------------------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp TCSSCCEEECTTCTT------------------------------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred cCCCCCEEECcCCCC------------------------------CccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 888888875432210 111 122222 22356777777655432 1
Q ss_pred CcchhhHHHhhh--ccCCCCCcccEEEeccCCC-CCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCC-cceeeccC
Q 047894 743 SRDVAVEEHVLD--ILQPHKCIKKVAIRNYGGA-RFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSS-LKHLAVKG 817 (1087)
Q Consensus 743 ~~~~~~~~~~l~--~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~-L~~L~L~~ 817 (1087)
. .. .+...++|+.|.++++... .+| .+.. +++|+.|++++|.+. .+| .++.+++ |++|++++
T Consensus 320 i---------p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~--l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 320 F---------PVETSLQKMKKLGMLECLYNQLEGKLP-AFGS--EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp C---------CCHHHHTTCTTCCEEECCSCCCEEECC-CCEE--EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred c---------CchhhhccCCCCCEEeCcCCcCccchh-hhCC--CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 0 11 2344556666666665555 555 3332 566666666666554 333 4666666 66666666
Q ss_pred CCCceeeccccccCCcccCCCCccEeeccccccccccccccccc-cccccCCcccEEEEecCCCccccCCC----CCCCc
Q 047894 818 LKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGN-VHVEIFPRLHKLSIVECPKLSGELPE----LLPSL 892 (1087)
Q Consensus 818 ~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~p~----~l~~L 892 (1087)
+. +..++..+.. ..+++|+.|++++...-......+... .....+++|+.|++++| .++ .+|. .+++|
T Consensus 387 N~-l~~lp~~~~~----~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~-~lp~~~~~~l~~L 459 (636)
T 4eco_A 387 NK-LKYIPNIFDA----KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QIS-KFPKELFSTGSPL 459 (636)
T ss_dssp SC-CSSCCSCCCT----TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCC-SCCTHHHHTTCCC
T ss_pred Cc-Ccccchhhhh----cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccC-cCCHHHHccCCCC
Confidence 53 2233322111 113355555555432111110000000 00002345666666655 444 3442 24556
Q ss_pred cEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhh-cCCCCCceEEeccCCCCcccccCCC
Q 047894 893 ETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMM-ENNSQLEKLYIRDCESLTFIARRRL 971 (1087)
Q Consensus 893 ~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~l 971 (1087)
++|++++|.-...+...+..+ ...+.++++|++|++++|.+. .+|..+. ..+++|+.|++++|..-. +|
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~----~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip---- 529 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDE----NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FP---- 529 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEET----TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CC----
T ss_pred CEEECCCCCCCCcCHHHhccc----cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cC----
Confidence 666665553221111111100 011233446666666666644 4554442 256666666666654221 22
Q ss_pred CCCCCEEEEecccCcccccc------ccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCC
Q 047894 972 PASLKRLEIENCEKLQRLFD------DEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCP 1043 (1087)
Q Consensus 972 ~~~L~~L~l~~c~~L~~l~l------~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~ 1043 (1087)
. .+..+++|+.|++ ++|++.+..|..+..+++|++|++++|.+ +.+|..+. ++|+.|++++|+
T Consensus 530 -~-----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 530 -T-----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp -C-----GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred -h-----hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 1 1223444444444 34555555565565666666666666655 45555443 566666666643
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=5.3e-29 Score=305.15 Aligned_cols=364 Identities=12% Similarity=0.083 Sum_probs=203.4
Q ss_pred CcCcccccccccCCCCcEEEecCCCCCc-----------------ccCcccC--CCCCcCEEeecCCccccccCccCCCC
Q 047894 611 IDIKSLPESTCKLLNLEILILRNCSRLI-----------------KLPPKMR--NLINLNHLDIRGAKLLKEMPCGMKEL 671 (1087)
Q Consensus 611 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~-----------------~lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~L 671 (1087)
|.++.+|.+++++++|++|+|++|.... .+|..++ ++++|++|++++|.....+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4555588888888888888888876333 1888877 88888888888887667778778888
Q ss_pred CCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhh-HHH-------HhccCCCCCCeeEEEeeCCCCCC
Q 047894 672 KKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQN-ARE-------AALCEKHNLEALTLDWVSQFGNS 743 (1087)
Q Consensus 672 ~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~-~~~-------~~l~~~~~L~~L~l~~~~~~~~~ 743 (1087)
++|+.|+...+.. +.. ..+ ..+..+++|+.|+++.+... ..
T Consensus 515 ~~L~~L~Ls~N~~------------------------------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 515 PELQSLNIACNRG------------------------------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp SSCCEEECTTCTT------------------------------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred CCCCEEECcCCCC------------------------------cccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence 8888775432210 001 111 13344557778877765433 11
Q ss_pred cchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCC-cceeeccCCCCc
Q 047894 744 RDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSS-LKHLAVKGLKKL 821 (1087)
Q Consensus 744 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~-L~~L~L~~~~~l 821 (1087)
. ....+...++|+.|.++++....+| .+.. +++|+.|++++|.+. .+| .+..+++ |+.|+|+++. +
T Consensus 564 p-------~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~--L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L 631 (876)
T 4ecn_A 564 P-------ASASLQKMVKLGLLDCVHNKVRHLE-AFGT--NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-L 631 (876)
T ss_dssp C-------CHHHHTTCTTCCEEECTTSCCCBCC-CCCT--TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-C
T ss_pred C-------ChhhhhcCCCCCEEECCCCCcccch-hhcC--CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-C
Confidence 0 0013455667777777777666666 4443 677777777777765 454 5777777 7777777764 3
Q ss_pred eeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCC----CCCCccEEEE
Q 047894 822 KSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPE----LLPSLETLVV 897 (1087)
Q Consensus 822 ~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----~l~~L~~L~l 897 (1087)
..++..+.. ...++|+.|.+++...-.... .+.........++|+.|++++| .+. .+|. .+++|+.|++
T Consensus 632 ~~lp~~~~~----~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N-~L~-~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 632 KYIPNIFNA----KSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYN-EIQ-KFPTELFATGSPISTIIL 704 (876)
T ss_dssp CSCCSCCCT----TCSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSS-CCC-SCCHHHHHTTCCCSEEEC
T ss_pred CcCchhhhc----cccCCCCEEECcCCcCCCccc-cchhhhccccCCCcCEEEccCC-cCC-ccCHHHHccCCCCCEEEC
Confidence 333322111 112346666665543211100 0000000011346777777766 555 4552 4566777777
Q ss_pred eecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhh-cCCCCCceEEeccCCCCcccccCCCCCCCC
Q 047894 898 SKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMM-ENNSQLEKLYIRDCESLTFIARRRLPASLK 976 (1087)
Q Consensus 898 ~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~ 976 (1087)
++|.-...+...+..+ ...|.++++|++|++++|.+. .+|..+. ..+++|+.|++++|..-. +| .
T Consensus 705 s~N~L~~ip~~~~~~~----~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp-----~--- 770 (876)
T 4ecn_A 705 SNNLMTSIPENSLKPK----DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FP-----T--- 770 (876)
T ss_dssp CSCCCSCCCTTSSSCT----TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CC-----C---
T ss_pred CCCcCCccChHHhccc----cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cc-----h---
Confidence 6663221111111100 012344556777777777654 5565542 356777777777665222 22 1
Q ss_pred EEEEecccCccccccc------cCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCC
Q 047894 977 RLEIENCEKLQRLFDD------EGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCP 1043 (1087)
Q Consensus 977 ~L~l~~c~~L~~l~l~------~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~ 1043 (1087)
.+.++++|+.|+++ +|++.+..|..+..+++|++|+|++|++ +.+|..+. ++|+.|++++|+
T Consensus 771 --~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 771 --QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp --GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred --hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 12233444444443 3556666666666667777777777766 56665543 567777777654
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=9.2e-28 Score=288.04 Aligned_cols=459 Identities=18% Similarity=0.146 Sum_probs=297.1
Q ss_pred CcccEEEecCCCCccc-CccccCCccceeeccCCCcCcccc-cccccCCCCcEEEecCCCCCcccCc-ccCCCCCcCEEe
Q 047894 578 KRLRMLSLQGYCIGEL-PIPFEELRLLRFLNLADIDIKSLP-ESTCKLLNLEILILRNCSRLIKLPP-KMRNLINLNHLD 654 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 654 (1087)
+.|++|++++|.++.+ |..|+++++|++|++++|.++.+| ..++++++|++|++++|. +..+|. .++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEE
Confidence 6899999999999877 678999999999999999999775 689999999999999987 555555 499999999999
Q ss_pred ecCCcccc--ccCccCCCCCCCCccCeeeeCc-cCCC-CCccccccccccccceeecCcccCCChhhHHHHhccCCCCCC
Q 047894 655 IRGAKLLK--EMPCGMKELKKLRTLSNFIVGK-RETA-SGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLE 730 (1087)
Q Consensus 655 l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~-~~~~-~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 730 (1087)
+++|. +. ..|..++++++|++|+...+.. ...+ ..+..+++|+.| .+....+ .......+..+.+|+
T Consensus 105 Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L--~L~~n~l------~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 105 LMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL--EIKALSL------RNYQSQSLKSIRDIH 175 (549)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE--EEEETTC------CEECTTTTTTCSEEE
T ss_pred CCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee--eccCCcc------cccChhhhhccccCc
Confidence 99998 54 3567799999999998766542 1111 234444444444 2222221 122233455666777
Q ss_pred eeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCC---CCCcCCcccCcccEEeeeCCCCCCCCC-----
Q 047894 731 ALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF---PLWIGDPLFCKIELLELENCDNCVSLP----- 802 (1087)
Q Consensus 731 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~---p~~~~~~~l~~L~~L~L~~~~~~~~l~----- 802 (1087)
.|++.++.... .... .+...++|+.|.++++....+ |.++. ..+++|+.|++++|...+..+
T Consensus 176 ~L~l~~n~~~~------~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 176 HLTLHLSESAF------LLEI---FADILSSVRYLELRDTNLARFQFSPLPVD-EVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp EEEEECSBSTT------HHHH---HHHSTTTBSEEEEESCBCTTCCCCCCSSC-CCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred eEecccCcccc------cchh---hHhhcccccEEEccCCccccccccccchh-hhhhcccceeccccccchhHHHHHHH
Confidence 77776554211 0000 112356677777777655543 22221 135677777777765432111
Q ss_pred CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeecccccccccccccccccc-ccccCCcccEEEEecCCCc
Q 047894 803 SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNV-HVEIFPRLHKLSIVECPKL 881 (1087)
Q Consensus 803 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l 881 (1087)
.+..+++|+.|++++|..................+++|+.+.+.++..-.... +.+.. ....+++|+.|++.+| ++
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~~~~~~~~L~~L~l~~n-~l 322 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--FYDLSTVYSLLEKVKRITVENS-KV 322 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--SCCCCHHHHHSTTCCEEEEESS-CC
T ss_pred Hhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--cccchhhhhhcccceEEEeccC-cc
Confidence 24556677777777663211000000000111336667777666543211110 00000 0122567888888887 56
Q ss_pred cccCCC----CCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCc-hhhhcCCCCCceEE
Q 047894 882 SGELPE----LLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLP-EEMMENNSQLEKLY 956 (1087)
Q Consensus 882 ~~~~p~----~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~ 956 (1087)
. .+|. .+++|++|++++|........ .......+++|++|++++|.+....+ ...+..+++|+.|+
T Consensus 323 ~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLK--------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp C-CCCHHHHHHCTTCCEEECCSSCCCHHHHH--------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred c-cCCHHHHhcCccccEEEccCCcccccccc--------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 5 6663 478888888888743211000 01123567789999999998654322 13356899999999
Q ss_pred eccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccE
Q 047894 957 IRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQS 1036 (1087)
Q Consensus 957 l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 1036 (1087)
+++|. ++.+| . .+..+++|+.|++++|.++.. +.. .+++|++|++++|.+.+. ...+++|++
T Consensus 394 Ls~N~-l~~lp-----~-----~~~~~~~L~~L~Ls~N~l~~l-~~~--~~~~L~~L~Ls~N~l~~~----~~~l~~L~~ 455 (549)
T 2z81_A 394 ISRNT-FHPMP-----D-----SCQWPEKMRFLNLSSTGIRVV-KTC--IPQTLEVLDVSNNNLDSF----SLFLPRLQE 455 (549)
T ss_dssp CTTCC-CCCCC-----S-----CCCCCTTCCEEECTTSCCSCC-CTT--SCTTCSEEECCSSCCSCC----CCCCTTCCE
T ss_pred CCCCC-CccCC-----h-----hhcccccccEEECCCCCcccc-cch--hcCCceEEECCCCChhhh----cccCChhcE
Confidence 99985 44333 2 245667888888888887753 222 246899999999987643 257899999
Q ss_pred EEEecCCCCcccCCCCCCCCcCeEEEccCCCCCCCCCCCCCCCCCCcEEeC
Q 047894 1037 ICIRKCPSLVSFPERGLPNTISAVYICECDKLEAPPNDMHKLNSLQSLSIK 1087 (1087)
Q Consensus 1037 L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~~~p~~l~~l~~L~~l~i~ 1087 (1087)
|++++| +++.+|..+.+++|+.|++++|......|+.+..+++|+.|+++
T Consensus 456 L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 456 LYISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp EECCSS-CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred EECCCC-ccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence 999995 78889987778899999999987665556668899999999874
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=292.39 Aligned_cols=451 Identities=16% Similarity=0.151 Sum_probs=285.5
Q ss_pred CCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccC-ccccCCccceeeccCCCcCcccc-cccccC
Q 047894 546 EHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELP-IPFEELRLLRFLNLADIDIKSLP-ESTCKL 623 (1087)
Q Consensus 546 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L 623 (1087)
+.++.|.+.++.. ..+.+..|.++++|++|++++|.+..++ ..|+++.+|++|++++|.++.+| ..++.+
T Consensus 28 ~~l~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSCCEEECCSCCC--------CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccEEEccCCcc--------CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 3577776544432 1223345788888999999888887774 56888888999999888888775 578888
Q ss_pred CCCcEEEecCCCCCcccCc-ccCCCCCcCEEeecCCcccc-ccCccCCCCCCCCccCeeeeCccCCCCCccccccccccc
Q 047894 624 LNLEILILRNCSRLIKLPP-KMRNLINLNHLDIRGAKLLK-EMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLC 701 (1087)
Q Consensus 624 ~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~ 701 (1087)
++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|+...+.... +
T Consensus 100 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-------~------- 164 (570)
T 2z63_A 100 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-------I------- 164 (570)
T ss_dssp TTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-------E-------
T ss_pred cccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-------e-------
Confidence 899999998875 566654 58888889999988887322 367778888888888643221100 0
Q ss_pred cceeecCcccCCChhhHHHHhccCCCCC----CeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCC--CC
Q 047894 702 DELCIAGLENVNNLQNAREAALCEKHNL----EALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA--RF 775 (1087)
Q Consensus 702 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~--~~ 775 (1087)
....+..+.+| ..|+++.+...... ...+. ..+|+.|.+.++... .+
T Consensus 165 -----------------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~---------~~~~~-~~~L~~L~l~~n~~~~~~~ 217 (570)
T 2z63_A 165 -----------------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQ---------PGAFK-EIRLHKLTLRNNFDSLNVM 217 (570)
T ss_dssp -----------------CGGGGHHHHTCTTCCCEEECTTCCCCEEC---------TTTTT-TCEEEEEEEESCCSCTTHH
T ss_pred -----------------cHHHccchhccchhhhhcccCCCCceecC---------HHHhc-cCcceeEecccccccccch
Confidence 00011112233 56666544322110 01111 125777777664211 01
Q ss_pred CCCcCC-------------------------c---ccC--cccEEeeeCC-CCCCCCC-CCCCcCCcceeeccCCCCcee
Q 047894 776 PLWIGD-------------------------P---LFC--KIELLELENC-DNCVSLP-SLGRLSSLKHLAVKGLKKLKS 823 (1087)
Q Consensus 776 p~~~~~-------------------------~---~l~--~L~~L~L~~~-~~~~~l~-~l~~l~~L~~L~L~~~~~l~~ 823 (1087)
|.++.. . .++ .++.+.+.++ ......+ .++.+++|+.|+++++. +..
T Consensus 218 ~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~ 296 (570)
T 2z63_A 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IER 296 (570)
T ss_dssp HHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECS
T ss_pred hhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chh
Confidence 111110 0 011 2344445444 2222233 45667777777776653 222
Q ss_pred eccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCC-CCCCCccEEEEeecCC
Q 047894 824 IESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP-ELLPSLETLVVSKCGK 902 (1087)
Q Consensus 824 ~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~ 902 (1087)
++..+ ..+ +|+.|.+.+.. +. ..|...+++|+.|++.+|. +.+..+ ..+++|++|++++|.
T Consensus 297 l~~~~------~~~-~L~~L~l~~n~--------~~-~l~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~n~- 358 (570)
T 2z63_A 297 VKDFS------YNF-GWQHLELVNCK--------FG-QFPTLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNG- 358 (570)
T ss_dssp CCBCC------SCC-CCSEEEEESCB--------CS-SCCBCBCSSCCEEEEESCB-SCCBCCCCBCTTCCEEECCSSC-
T ss_pred hhhhh------ccC-CccEEeeccCc--------cc-ccCcccccccCEEeCcCCc-cccccccccCCCCCEEeCcCCc-
Confidence 22211 113 56666665542 11 1223456777777777763 332333 456677777776653
Q ss_pred ccccCCCCCcccEEE--eccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEE
Q 047894 903 LVVPLSCYPMLCRLE--VDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEI 980 (1087)
Q Consensus 903 ~~~~~~~~~~L~~l~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l 980 (1087)
+.... ...+.++++|++|++++|.+.. ++.. +..+++|+.|++++|......+.. .+
T Consensus 359 ----------l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~---------~~ 417 (570)
T 2z63_A 359 ----------LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFS---------VF 417 (570)
T ss_dssp ----------CBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE-EETCTTCCEEECTTSEEESCTTSC---------TT
T ss_pred ----------cCccccccccccccCccCEEECCCCcccc-cccc-ccccCCCCEEEccCCccccccchh---------hh
Confidence 12221 1234467789999999998654 3433 468999999999998733222211 24
Q ss_pred ecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCC-cccCCCCCCCCCccEEEEecCCCCcccCCC--CCCCCc
Q 047894 981 ENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKL-ESIPDGLPNLKCLQSICIRKCPSLVSFPER--GLPNTI 1057 (1087)
Q Consensus 981 ~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL 1057 (1087)
.++++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++| .++.++.. ...++|
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCC
Confidence 56788999999999999988889999999999999999987 578899999999999999996 56666432 335799
Q ss_pred CeEEEccCCCCCCCCCCCCCCCCCCcEEeC
Q 047894 1058 SAVYICECDKLEAPPNDMHKLNSLQSLSIK 1087 (1087)
Q Consensus 1058 ~~L~i~~c~~l~~~p~~l~~l~~L~~l~i~ 1087 (1087)
+.|++++|......|..+.++++|+.|+++
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 999999997655556678999999999975
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=282.70 Aligned_cols=429 Identities=15% Similarity=0.120 Sum_probs=248.5
Q ss_pred CcccEEEecCCCCcccC-ccccCCccceeeccCCCcCccc-ccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEee
Q 047894 578 KRLRMLSLQGYCIGELP-IPFEELRLLRFLNLADIDIKSL-PESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDI 655 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 655 (1087)
++|++|++++|.+..++ ..|+++.+|++|++++|.++.+ |..++++++|++|+|++|. +..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence 67788888887777664 5677778888888888877766 5677778888888888765 5677765 7778888888
Q ss_pred cCCcccc-ccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCC--Cee
Q 047894 656 RGAKLLK-EMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNL--EAL 732 (1087)
Q Consensus 656 ~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L--~~L 732 (1087)
++|.... .+|..++++++|++|+...+... . ..+..+.+| +.|
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-------------------------------~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE-------------------------------K---SSVLPIAHLNISKV 143 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-------------------------------G---GGGGGGTTSCEEEE
T ss_pred cCCccccccchhhhccCCcceEEEecCcccc-------------------------------h---hhccccccceeeEE
Confidence 7777322 24566777777777755432210 0 112233344 777
Q ss_pred EEEeeCC--CCCCcchhhHHHhhhccCCCCCcccEEE--eccCCC-CCCCCcCCcccCcccEEeeeCCC-------CCCC
Q 047894 733 TLDWVSQ--FGNSRDVAVEEHVLDILQPHKCIKKVAI--RNYGGA-RFPLWIGDPLFCKIELLELENCD-------NCVS 800 (1087)
Q Consensus 733 ~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~L~~L~l--~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~-------~~~~ 800 (1087)
++.++.. .... ...+..... +.+.+ .++... .++.... ..+++|+.|++++|. ....
T Consensus 144 ~l~~n~l~~~~~~---------~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~ 212 (520)
T 2z7x_B 144 LLVLGETYGEKED---------PEGLQDFNT-ESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSI 212 (520)
T ss_dssp EEEECTTTTSSCC---------TTTTTTCCE-EEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred Eeecccccccccc---------ccccccccc-ceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeecc
Confidence 7776643 1110 011111110 12222 221111 1111111 125666666666654 2223
Q ss_pred CCCCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCC
Q 047894 801 LPSLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPK 880 (1087)
Q Consensus 801 l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 880 (1087)
++.++.+++|+.|+++++............ ....++|+.|.+++...-......+... ....+++|+.+++.++ .
T Consensus 213 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~~~l~~L~~l~l~~n-~ 287 (520)
T 2z7x_B 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQ---LVWHTTVWYFSISNVKLQGQLDFRDFDY-SGTSLKALSIHQVVSD-V 287 (520)
T ss_dssp HHGGGGCTTCCEEEEEEEEEEHHHHHHHHH---HHHTSSCSEEEEEEEEEESCCCCCCCCC-CSCCCCEEEEEEEEEC-C
T ss_pred hhhhccccchhhccccccccCHHHHHHHHH---HhhhCcccEEEeecccccCccccchhhc-ccccCceeEecccccc-c
Confidence 335566666666666554211000000000 0012356666655542111111000000 0023555666666655 2
Q ss_pred ccccCCC-C------CCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCc
Q 047894 881 LSGELPE-L------LPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLE 953 (1087)
Q Consensus 881 l~~~~p~-~------l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 953 (1087)
+ .+|. . -++|+.|++++|...... ....+++|++|++++|.+....|..+ ..+++|+
T Consensus 288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~ 351 (520)
T 2z7x_B 288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-------------CPSKISPFLHLDFSNNLLTDTVFENC-GHLTELE 351 (520)
T ss_dssp C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-------------CCSSCCCCCEEECCSSCCCTTTTTTC-CCCSSCC
T ss_pred e--ecchhhhhcccccCceeEEEcCCCcccccc-------------chhhCCcccEEEeECCccChhhhhhh-ccCCCCC
Confidence 2 2331 0 134666666666422111 01466788889999998777667664 6788999
Q ss_pred eEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCC-CCCCCCCccEEEEeccCCCcccCCCCCCCC
Q 047894 954 KLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPS-SSSSPVMLQLLRIENCRKLESIPDGLPNLK 1032 (1087)
Q Consensus 954 ~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 1032 (1087)
.|++++|..-. ++ .+|. .+.++++|+.|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+. +
T Consensus 352 ~L~L~~N~l~~-l~--~~~~-----~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 352 TLILQMNQLKE-LS--KIAE-----MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp EEECCSSCCCB-HH--HHHH-----HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred EEEccCCccCc-cc--cchH-----HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 99998887332 11 0111 245677888888888888884444 477888999999999988777776554 7
Q ss_pred CccEEEEecCCCCcccCCC-CCCCCcCeEEEccCCCCCCCCCC-CCCCCCCCcEEeC
Q 047894 1033 CLQSICIRKCPSLVSFPER-GLPNTISAVYICECDKLEAPPND-MHKLNSLQSLSIK 1087 (1087)
Q Consensus 1033 ~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~~l~~~p~~-l~~l~~L~~l~i~ 1087 (1087)
+|++|++++| .++.+|.. ...++|+.|++++|. ++.+|.. +..+++|+.|+++
T Consensus 422 ~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 422 RIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECc
Confidence 8999999985 67788762 245789999998885 5567765 8888889888874
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=4.9e-28 Score=293.02 Aligned_cols=363 Identities=15% Similarity=0.146 Sum_probs=248.1
Q ss_pred CCCcccCccccCCccceeeccCCCcCcc------------------cccccc--cCCCCcEEEecCCCCCcccCcccCCC
Q 047894 588 YCIGELPIPFEELRLLRFLNLADIDIKS------------------LPESTC--KLLNLEILILRNCSRLIKLPPKMRNL 647 (1087)
Q Consensus 588 ~~i~~lp~~i~~l~~L~~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~L 647 (1087)
|.++.+|..|+++.+|++|+|++|.++. +|.+++ ++++|++|++++|.....+|..++++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 4555588888888889999998888887 888888 88889999998888778888888888
Q ss_pred CCcCEEeecCCc-ccc-ccCccCCCC------CCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHH
Q 047894 648 INLNHLDIRGAK-LLK-EMPCGMKEL------KKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAR 719 (1087)
Q Consensus 648 ~~L~~L~l~~~~-~~~-~~p~~i~~L------~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~ 719 (1087)
++|++|++++|. ... .+|..++++ ++|+.|+...+.... +..
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-------------------------ip~----- 322 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-------------------------FPV----- 322 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-------------------------CCC-----
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-------------------------cCc-----
Confidence 889999888886 333 577777665 777777543222110 000
Q ss_pred HHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCc-ccEEeeeCCCCC
Q 047894 720 EAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCK-IELLELENCDNC 798 (1087)
Q Consensus 720 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~-L~~L~L~~~~~~ 798 (1087)
...+..+.+|+.|+++.+..... +..+...++|+.|.++++....+|.++.. +++ |+.|++++|.+.
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~----------ip~~~~l~~L~~L~L~~N~l~~lp~~l~~--l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGK----------LPAFGSEIKLASLNLAYNQITEIPANFCG--FTEQVENLSFAHNKLK 390 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEE----------CCCCEEEEEESEEECCSSEEEECCTTSEE--ECTTCCEEECCSSCCS
T ss_pred hhhhccCCCCCEEeCcCCcCccc----------hhhhCCCCCCCEEECCCCccccccHhhhh--hcccCcEEEccCCcCc
Confidence 01344556677777765443211 11344556788888888777788888765 888 999999999987
Q ss_pred CCCC-CCCCc--CCcceeeccCCCCceeeccccccC-CcccCCCCccEeeccccccccccccccccccccccCCcccEEE
Q 047894 799 VSLP-SLGRL--SSLKHLAVKGLKKLKSIESEVYGE-GFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLS 874 (1087)
Q Consensus 799 ~~l~-~l~~l--~~L~~L~L~~~~~l~~~~~~~~~~-~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~ 874 (1087)
.+| .++.+ ++|+.|+++++.....++..+... ......++|+.|++++...- .....+ ...+++|+.|+
T Consensus 391 -~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-----~~~l~~L~~L~ 463 (636)
T 4eco_A 391 -YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKEL-----FSTGSPLSSIN 463 (636)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH-----HHTTCCCSEEE
T ss_pred -ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHH-----HccCCCCCEEE
Confidence 566 45554 489999999875433332222200 00013568888888774321 111000 12378999999
Q ss_pred EecCCCccccCCCC-C----------CCccEEEEeecCCccccCCCCCcccEEEeccC--CCcCCccEEEeccCCCCCCC
Q 047894 875 IVECPKLSGELPEL-L----------PSLETLVVSKCGKLVVPLSCYPMLCRLEVDEC--KELANLRSLLICNSTALKSL 941 (1087)
Q Consensus 875 l~~c~~l~~~~p~~-l----------~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~--~~l~~L~~L~l~~~~~~~~~ 941 (1087)
+++| +++ .+|.. + ++|++|++++|.-.. +. ..+ ..+++|++|++++|.+.. +
T Consensus 464 Ls~N-~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------lp-~~~~~~~l~~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 464 LMGN-MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-----------LS-DDFRATTLPYLVGIDLSYNSFSK-F 528 (636)
T ss_dssp CCSS-CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCB-----------CC-GGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred CCCC-CCC-CcCHHHhccccccccccCCccEEECcCCcCCc-----------cC-hhhhhccCCCcCEEECCCCCCCC-c
Confidence 9998 676 66642 2 189999999884221 11 223 378899999999999876 8
Q ss_pred chhhhcCCCCCceEEeccCCCCcccc-cCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCC
Q 047894 942 PEEMMENNSQLEKLYIRDCESLTFIA-RRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRK 1020 (1087)
Q Consensus 942 ~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 1020 (1087)
|..+ ..+++|+.|++++|..+..-. .+.+|. .+..|++|+.|++++|++ +.+|..+. ++|++|++++|++
T Consensus 529 p~~~-~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-----~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 529 PTQP-LNSSTLKGFGIRNQRDAQGNRTLREWPE-----GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCGG-GGCSSCCEEECCSCBCTTCCBCCCCCCT-----TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred Chhh-hcCCCCCEEECCCCcccccCcccccChH-----HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 8776 479999999997654222111 112333 356789999999999999 55676654 8999999999988
Q ss_pred Ccc
Q 047894 1021 LES 1023 (1087)
Q Consensus 1021 ~~~ 1023 (1087)
...
T Consensus 600 ~~~ 602 (636)
T 4eco_A 600 ISI 602 (636)
T ss_dssp CEE
T ss_pred ccc
Confidence 743
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=4.5e-27 Score=288.10 Aligned_cols=366 Identities=15% Similarity=0.125 Sum_probs=258.3
Q ss_pred CCCcccCccccCCccceeeccCCCcCcc------------------cccccc--cCCCCcEEEecCCCCCcccCcccCCC
Q 047894 588 YCIGELPIPFEELRLLRFLNLADIDIKS------------------LPESTC--KLLNLEILILRNCSRLIKLPPKMRNL 647 (1087)
Q Consensus 588 ~~i~~lp~~i~~l~~L~~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~L 647 (1087)
|.++.+|..|+++.+|++|+|++|.++. +|..++ ++++|++|+|++|.....+|..+++|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4555589999999999999999999998 999988 99999999999998888999999999
Q ss_pred CCcCEEeecCCc-ccc-ccCccCCCCC-------CCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhH
Q 047894 648 INLNHLDIRGAK-LLK-EMPCGMKELK-------KLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNA 718 (1087)
Q Consensus 648 ~~L~~L~l~~~~-~~~-~~p~~i~~L~-------~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~ 718 (1087)
++|++|++++|. ... .+|.++++++ +|+.|+...+... .+..
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-------------------------~ip~---- 565 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-------------------------EFPA---- 565 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-------------------------BCCC----
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-------------------------ccCC----
Confidence 999999999997 333 5777666554 6666654322110 0000
Q ss_pred HHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCc-ccEEeeeCCCC
Q 047894 719 REAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCK-IELLELENCDN 797 (1087)
Q Consensus 719 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~-L~~L~L~~~~~ 797 (1087)
...+.++.+|+.|+++++... .+..+...++|+.|.++++....+|.++.. +++ |+.|++++|.+
T Consensus 566 -~~~l~~L~~L~~L~Ls~N~l~-----------~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~--l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 566 -SASLQKMVKLGLLDCVHNKVR-----------HLEAFGTNVKLTDLKLDYNQIEEIPEDFCA--FTDQVEGLGFSHNKL 631 (876)
T ss_dssp -HHHHTTCTTCCEEECTTSCCC-----------BCCCCCTTSEESEEECCSSCCSCCCTTSCE--ECTTCCEEECCSSCC
T ss_pred -hhhhhcCCCCCEEECCCCCcc-----------cchhhcCCCcceEEECcCCccccchHHHhh--ccccCCEEECcCCCC
Confidence 013456678888888765432 122566778999999999988899988875 888 99999999997
Q ss_pred CCCCC-CCCCcC--CcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEE
Q 047894 798 CVSLP-SLGRLS--SLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLS 874 (1087)
Q Consensus 798 ~~~l~-~l~~l~--~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~ 874 (1087)
. .+| .++.++ +|+.|+++++.....++ .+.........++|+.|.+++...- .....+ ...+++|+.|+
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~-----~~~l~~L~~L~ 703 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQ-KFPTEL-----FATGSPISTII 703 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH-----HHTTCCCSEEE
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccc-cchhhhccccCCCcCEEEccCCcCC-ccCHHH-----HccCCCCCEEE
Confidence 6 566 555554 49999999875432221 1111100112457888888775321 111000 12478999999
Q ss_pred EecCCCccccCCCC-----------CCCccEEEEeecCCccccCCCCCcccEEEeccC--CCcCCccEEEeccCCCCCCC
Q 047894 875 IVECPKLSGELPEL-----------LPSLETLVVSKCGKLVVPLSCYPMLCRLEVDEC--KELANLRSLLICNSTALKSL 941 (1087)
Q Consensus 875 l~~c~~l~~~~p~~-----------l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~--~~l~~L~~L~l~~~~~~~~~ 941 (1087)
+++| .+. .+|.. +++|+.|++++|.-.. +. ..+ ..+++|+.|++++|.+.. +
T Consensus 704 Ls~N-~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----------lp-~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 704 LSNN-LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----------LS-DDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp CCSC-CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----------CC-GGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred CCCC-cCC-ccChHHhccccccccccCCccEEECCCCCCcc-----------ch-HHhhhccCCCcCEEEeCCCCCCc-c
Confidence 9998 776 56642 1289999999984221 11 123 378899999999999776 7
Q ss_pred chhhhcCCCCCceEEeccCCCCcccc-cCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCC
Q 047894 942 PEEMMENNSQLEKLYIRDCESLTFIA-RRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRK 1020 (1087)
Q Consensus 942 ~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 1020 (1087)
|..+ ..+++|+.|++++|+.+..-. .+.+|. .+.+|++|+.|++++|++ +.+|..+. ++|+.|+|++|++
T Consensus 769 p~~l-~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-----~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 769 PTQP-LNSSQLKAFGIRHQRDAEGNRILRQWPT-----GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCGG-GGCTTCCEEECCCCBCTTCCBCCCCCCT-----TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred chhh-hcCCCCCEEECCCCCCcccccccccChH-----HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 7776 489999999998865322111 113343 356789999999999999 66777654 7999999999998
Q ss_pred CcccCCCC
Q 047894 1021 LESIPDGL 1028 (1087)
Q Consensus 1021 ~~~~p~~l 1028 (1087)
....+..+
T Consensus 840 ~~i~~~~~ 847 (876)
T 4ecn_A 840 ISIDVTSV 847 (876)
T ss_dssp CEEECGGG
T ss_pred CccChHHc
Confidence 75544443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.4e-26 Score=277.71 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=119.8
Q ss_pred CCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCC
Q 047894 922 KELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSP 1001 (1087)
Q Consensus 922 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~ 1001 (1087)
..+++|++|++++|.+....|..+ ..+++|+.|++++|. ++.++. +|. .+.++++|+.|++++|.+++.+|
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~--~~~-----~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNG-LKNFFK--VAL-----MTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSC-CCBTTH--HHH-----TTTTCTTCCEEECTTSCCBSCCS
T ss_pred cCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCC-cCCccc--chh-----hhcCCCCCCEEECCCCcCCCccC
Confidence 567899999999999887677664 689999999999986 332221 111 24567889999999999988555
Q ss_pred C-CCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCC-CCCCcCeEEEccCCCCCCCCCC-CCCC
Q 047894 1002 S-SSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERG-LPNTISAVYICECDKLEAPPND-MHKL 1078 (1087)
Q Consensus 1002 ~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~-~~~sL~~L~i~~c~~l~~~p~~-l~~l 1078 (1087)
. .+..+++|++|++++|.+.+.+|..+. ++|++|++++| .++.+|... ..++|+.|++++|. ++.+|.. +..+
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 496 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRL 496 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTC
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcC
Confidence 4 578899999999999999877776654 79999999995 788898733 35789999999986 5567776 8899
Q ss_pred CCCCcEEeC
Q 047894 1079 NSLQSLSIK 1087 (1087)
Q Consensus 1079 ~~L~~l~i~ 1087 (1087)
++|+.|+++
T Consensus 497 ~~L~~L~l~ 505 (562)
T 3a79_B 497 TSLQYIWLH 505 (562)
T ss_dssp TTCCCEECC
T ss_pred CCCCEEEec
Confidence 999999874
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=9.2e-27 Score=279.30 Aligned_cols=458 Identities=18% Similarity=0.160 Sum_probs=287.6
Q ss_pred CCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccC-ccccCCccceeeccCCCcCcccccc-cccC
Q 047894 546 EHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELP-IPFEELRLLRFLNLADIDIKSLPES-TCKL 623 (1087)
Q Consensus 546 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L 623 (1087)
++++.|.+.++.. ....+..|.++++|++|++++|.+..++ ..|+++.+|++|++++|.++.+|.. ++++
T Consensus 26 ~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNKI--------TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSCC--------CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCccEEECcCCcc--------CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 4566666544432 1223345778888888888888887764 6688888888888888888877654 8888
Q ss_pred CCCcEEEecCCCCCc-ccCcccCCCCCcCEEeecCCccccccC-ccCCCCCCCCccCeeeeCccC-CCCCcccccccccc
Q 047894 624 LNLEILILRNCSRLI-KLPPKMRNLINLNHLDIRGAKLLKEMP-CGMKELKKLRTLSNFIVGKRE-TASGLEDLKCLNFL 700 (1087)
Q Consensus 624 ~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~-~~~~~~~L~~L~~L 700 (1087)
++|++|++++|.... ..|..+.++++|++|++++|..+..+| ..++++++|+.|+...+.... .+..+..+++|+.+
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 888888888876322 346678888888888888887555665 357888888888765544322 12334444444444
Q ss_pred ccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCC-----C
Q 047894 701 CDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR-----F 775 (1087)
Q Consensus 701 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~ 775 (1087)
. +.... ........+..+.+|+.|+++.+....... ..........+|+.|.+.++.... +
T Consensus 178 ~--l~~n~------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 178 T--LHLSE------SAFLLEIFADILSSVRYLELRDTNLARFQF------SPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp E--EECSB------STTHHHHHHHSTTTBSEEEEESCBCTTCCC------CCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred e--cccCc------ccccchhhHhhcccccEEEccCCccccccc------cccchhhhhhcccceeccccccchhHHHHH
Confidence 2 21111 112222334567899999999876543210 001122346788999998764321 2
Q ss_pred CCCcCCcccCcccEEeeeCCCCCC--C-----CCCCCCcCCcceeeccCCCCceeecccccc-CCcccCCCCccEeeccc
Q 047894 776 PLWIGDPLFCKIELLELENCDNCV--S-----LPSLGRLSSLKHLAVKGLKKLKSIESEVYG-EGFSMPFPSLEILSFEN 847 (1087)
Q Consensus 776 p~~~~~~~l~~L~~L~L~~~~~~~--~-----l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~~~~~fp~L~~L~l~~ 847 (1087)
+..+. .+++|+.+++++|.... . .+.+..+++|+.|.+.++..-... .+.. ......+++|+.+.+.+
T Consensus 244 ~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 244 LKLLR--YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY--LFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HGGGG--GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG--GSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHhh--hhccccccccccccccccccccccchhhhhhhcccccccccccccchhh--hcccchhhhhhcccceEEEecc
Confidence 22222 36789999999987533 1 224567889999998876321110 0000 00011256788888877
Q ss_pred cccccccccccccccccccCCcccEEEEecCCCccccC------CCCCCCccEEEEeecCCccccCCCCCcccEEEe--c
Q 047894 848 LAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGEL------PELLPSLETLVVSKCGKLVVPLSCYPMLCRLEV--D 919 (1087)
Q Consensus 848 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~--~ 919 (1087)
.. +......+ ...+++|+.|++++| ++.+.+ ...+++|++|++++|.-. .+.. .
T Consensus 320 n~-l~~ip~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~ 381 (549)
T 2z81_A 320 SK-VFLVPCSF-----SQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLR-----------SMQKTGE 381 (549)
T ss_dssp SC-CCCCCHHH-----HHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCC-----------CHHHHHH
T ss_pred Cc-cccCCHHH-----HhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCccc-----------ccccchh
Confidence 43 22211111 124799999999999 666433 246789999999998421 1110 1
Q ss_pred cCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCC
Q 047894 920 ECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSS 999 (1087)
Q Consensus 920 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~ 999 (1087)
.+..+++|++|++++|.+. .+|..+ ..+++|+.|++++|. ++.++. .+|+ +|+.|++++|++++.
T Consensus 382 ~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~~~~L~~L~Ls~N~-l~~l~~-~~~~-----------~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNTFH-PMPDSC-QWPEKMRFLNLSSTG-IRVVKT-CIPQ-----------TLEVLDVSNNNLDSF 446 (549)
T ss_dssp HGGGCTTCCEEECTTCCCC-CCCSCC-CCCTTCCEEECTTSC-CSCCCT-TSCT-----------TCSEEECCSSCCSCC
T ss_pred hhhcCCCCCEEECCCCCCc-cCChhh-cccccccEEECCCCC-cccccc-hhcC-----------CceEEECCCCChhhh
Confidence 2556789999999999865 667654 578999999999987 444432 2333 555566666666653
Q ss_pred CCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCC--CCCCCcCeEEEccCCCCC
Q 047894 1000 SPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPER--GLPNTISAVYICECDKLE 1069 (1087)
Q Consensus 1000 ~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~~l~ 1069 (1087)
. ..+++|++|++++|++. .+|. ...+++|++|++++| .++.+|.. ...++|+.|++++|+...
T Consensus 447 ~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 447 S----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp C----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred c----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 2 35677888888888765 5665 356778888888874 56666653 234678888887776443
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=274.47 Aligned_cols=443 Identities=14% Similarity=0.107 Sum_probs=262.9
Q ss_pred CCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCccc-CccccCCccceeeccCCCcCcccccccccCC
Q 047894 546 EHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGEL-PIPFEELRLLRFLNLADIDIKSLPESTCKLL 624 (1087)
Q Consensus 546 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~ 624 (1087)
++++.|.+.++.. ....+..|.++++|++|+|++|.++.+ |..|+++.+|++|++++|.++.+|.. .++
T Consensus 21 ~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYI--------SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV 90 (520)
T ss_dssp TTCSEEECCSSCC--------CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred ccccEEECCCCcc--------cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence 6777777655432 123345678899999999999999877 77899999999999999999999887 899
Q ss_pred CCcEEEecCCCCCc-ccCcccCCCCCcCEEeecCCccccccCccCCCCCCC--CccCeeeeCccCCCCCccccccccccc
Q 047894 625 NLEILILRNCSRLI-KLPPKMRNLINLNHLDIRGAKLLKEMPCGMKELKKL--RTLSNFIVGKRETASGLEDLKCLNFLC 701 (1087)
Q Consensus 625 ~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~~~~~~~~~~~~L~~L~~L~ 701 (1087)
+|++|++++|.... .+|..++++++|++|++++|. +.. ..++.+++| +.|....+...........+..+..
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-- 165 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-- 165 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE--
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccccc--
Confidence 99999999987443 467889999999999999987 433 346677777 7776655443100111222232221
Q ss_pred cceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCC--CCCCc
Q 047894 702 DELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR--FPLWI 779 (1087)
Q Consensus 702 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--~p~~~ 779 (1087)
..+.+ .+.............+..+.+|+.|+++++...... ......+..+...++|+.|.+.++.... +....
T Consensus 166 ~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 166 ESLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC---SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp EEEEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT---HHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ceEEE-EeccCcchhhhhhhhhhcccceeecccccccccccc---ceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 01111 011111111112223455677888888765421111 1122334456667778888777643221 00000
Q ss_pred CCcccCcccEEeeeCCCCCCCCC-CC-----CCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccc
Q 047894 780 GDPLFCKIELLELENCDNCVSLP-SL-----GRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEH 853 (1087)
Q Consensus 780 ~~~~l~~L~~L~L~~~~~~~~l~-~l-----~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~ 853 (1087)
.....++|+.|++++|.+.+.+| .+ +.+++|+.++++++.. .++...
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~------------------------- 294 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSY------------------------- 294 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHH-------------------------
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhh-------------------------
Confidence 00013578888888887765555 34 6677777777665432 111000
Q ss_pred cccccccccccccCCcccEEEEecCCCccc-cCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEe
Q 047894 854 WDTDIKGNVHVEIFPRLHKLSIVECPKLSG-ELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLI 932 (1087)
Q Consensus 854 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l 932 (1087)
+.. ...-++|+.|++.+| .+.. .++..+++|++|++++|.-.... ...+.++++|++|++
T Consensus 295 ----~~~---~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 295 ----IYE---IFSNMNIKNFTVSGT-RMVHMLCPSKISPFLHLDFSNNLLTDTV-----------FENCGHLTELETLIL 355 (520)
T ss_dssp ----HHH---HHHTCCCSEEEEESS-CCCCCCCCSSCCCCCEEECCSSCCCTTT-----------TTTCCCCSSCCEEEC
T ss_pred ----hhc---ccccCceeEEEcCCC-ccccccchhhCCcccEEEeECCccChhh-----------hhhhccCCCCCEEEc
Confidence 000 000134666666666 3331 12245666666666666321110 123345667777777
Q ss_pred ccCCCCC--CCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCc
Q 047894 933 CNSTALK--SLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVML 1010 (1087)
Q Consensus 933 ~~~~~~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L 1010 (1087)
++|.+.. .+|.. +..+++|+.|++++|.....++.. .+..+++|+.|++++|.+++..|..+. ++|
T Consensus 356 ~~N~l~~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~l~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L 423 (520)
T 2z7x_B 356 QMNQLKELSKIAEM-TTQMKSLQQLDISQNSVSYDEKKG---------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRI 423 (520)
T ss_dssp CSSCCCBHHHHHHH-HTTCTTCCEEECCSSCCBCCGGGC---------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTC
T ss_pred cCCccCccccchHH-HhhCCCCCEEECCCCcCCcccccc---------hhccCccCCEEECcCCCCCcchhhhhc--ccC
Confidence 7777654 23333 356777888888777643323321 133456677777777777665555432 677
Q ss_pred cEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCC--CCCCcCeEEEccCCC
Q 047894 1011 QLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERG--LPNTISAVYICECDK 1067 (1087)
Q Consensus 1011 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~i~~c~~ 1067 (1087)
++|++++|.+. .+|..+..+++|++|++++| .++.+|... ..++|+.|++++|+.
T Consensus 424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCccc-ccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 88888887765 66666667788888888774 566777642 235777888877764
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.5e-25 Score=274.49 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=86.6
Q ss_pred CCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCC
Q 047894 921 CKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSS 1000 (1087)
Q Consensus 921 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~ 1000 (1087)
+..+.+++.++++.|.+....+.. +..+++|+.|++++|.....+.. . .+..+++|+.|++++|++++..
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~-~~~~~~L~~L~Ls~N~~~~~~~~----~-----~~~~l~~L~~L~Ls~N~L~~l~ 510 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLP----D-----IFTELRNLTFLDLSQCQLEQLS 510 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEEC----S-----CCTTCTTCCEEECTTSCCCEEC
T ss_pred cccccccccccccccccccccccc-cccchhhhhhhhhhcccccccCc----h-----hhhhccccCEEECCCCccCCcC
Confidence 345566777777777654443333 35667777777777664433221 1 2445667777777777777777
Q ss_pred CCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCC---CCCCcCeEEEccCC
Q 047894 1001 PSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERG---LPNTISAVYICECD 1066 (1087)
Q Consensus 1001 ~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~---~~~sL~~L~i~~c~ 1066 (1087)
|..|.++++|++|+|++|.+....|..+.++++|++|++++ ++++.++... ++++|+.|++++|+
T Consensus 511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 77777777777777777777655556677777777777777 4566665532 34577777777765
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=8.6e-25 Score=252.36 Aligned_cols=392 Identities=22% Similarity=0.203 Sum_probs=172.9
Q ss_pred CCcccEEEecCCCCcccCccccCCccceeeccCCCcCc-ccccccccCCCC-------------cEEEecCCCCCcccCc
Q 047894 577 FKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIK-SLPESTCKLLNL-------------EILILRNCSRLIKLPP 642 (1087)
Q Consensus 577 ~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~~l~~lp~ 642 (1087)
..+|++|++++|.++.+|..|+++.+|++|++++|.+. .+|.+++++.+| ++|++++|. +..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC
Confidence 47899999999999999999999999999999999877 789888888765 889999876 677776
Q ss_pred ccCCCCCcCEEeecCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHh
Q 047894 643 KMRNLINLNHLDIRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAA 722 (1087)
Q Consensus 643 ~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 722 (1087)
. .++|++|++++|. +..+|..+ ++|+.|+...+.... +..+
T Consensus 89 ~---~~~L~~L~l~~n~-l~~lp~~~---~~L~~L~l~~n~l~~----l~~~---------------------------- 129 (454)
T 1jl5_A 89 L---PPHLESLVASCNS-LTELPELP---QSLKSLLVDNNNLKA----LSDL---------------------------- 129 (454)
T ss_dssp C---CTTCSEEECCSSC-CSSCCCCC---TTCCEEECCSSCCSC----CCSC----------------------------
T ss_pred C---cCCCCEEEccCCc-CCcccccc---CCCcEEECCCCccCc----ccCC----------------------------
Confidence 2 4789999999887 56677543 566666543222111 1000
Q ss_pred ccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC
Q 047894 723 LCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP 802 (1087)
Q Consensus 723 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 802 (1087)
..+|+.|+++++.... +..+...++|+.|.++++....+|.+ .++|+.|++++|.... +|
T Consensus 130 ---~~~L~~L~L~~n~l~~-----------lp~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~-l~ 189 (454)
T 1jl5_A 130 ---PPLLEYLGVSNNQLEK-----------LPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE-LP 189 (454)
T ss_dssp ---CTTCCEEECCSSCCSS-----------CCCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS-CC
T ss_pred ---CCCCCEEECcCCCCCC-----------CcccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc-Cc
Confidence 0234444443332110 11233344445555544444444432 2345555555554433 44
Q ss_pred CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCcc
Q 047894 803 SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLS 882 (1087)
Q Consensus 803 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 882 (1087)
.++.+++|++|+++++.. ..++. ..++|+.|++.+.. +..+. ..+.+++|+.|++.+| +++
T Consensus 190 ~~~~l~~L~~L~l~~N~l-~~l~~---------~~~~L~~L~l~~n~-l~~lp-------~~~~l~~L~~L~l~~N-~l~ 250 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSL-KKLPD---------LPLSLESIVAGNNI-LEELP-------ELQNLPFLTTIYADNN-LLK 250 (454)
T ss_dssp CCTTCTTCCEEECCSSCC-SSCCC---------CCTTCCEEECCSSC-CSSCC-------CCTTCTTCCEEECCSS-CCS
T ss_pred cccCCCCCCEEECCCCcC-CcCCC---------CcCcccEEECcCCc-CCccc-------ccCCCCCCCEEECCCC-cCC
Confidence 455555555555554421 11110 12344455444431 11110 0123445555555554 443
Q ss_pred ccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCC------CcCCccEEEeccCCCCCCCchhhhcCCCCCceEE
Q 047894 883 GELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECK------ELANLRSLLICNSTALKSLPEEMMENNSQLEKLY 956 (1087)
Q Consensus 883 ~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~------~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 956 (1087)
.+|..+++|++|++++|.-...+ ...++|+.++++.+. ..++|++|++++|.+.. ++ ...++|+.|+
T Consensus 251 -~l~~~~~~L~~L~l~~N~l~~l~-~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~ 323 (454)
T 1jl5_A 251 -TLPDLPPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LC----DLPPSLEELN 323 (454)
T ss_dssp -SCCSCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEE
T ss_pred -cccccccccCEEECCCCcccccC-cccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEE
Confidence 34444445555555544211110 011223333332210 11467777777776543 22 1124777777
Q ss_pred eccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCc--ccCCCCCCC---
Q 047894 957 IRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLE--SIPDGLPNL--- 1031 (1087)
Q Consensus 957 l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l--- 1031 (1087)
+++|. +..++ . .+++|+.|++++|+++. +|. .+++|++|++++|++.+ .+|.++..+
T Consensus 324 Ls~N~-l~~lp-----~--------~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n 385 (454)
T 1jl5_A 324 VSNNK-LIELP-----A--------LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMN 385 (454)
T ss_dssp CCSSC-CSCCC-----C--------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred CCCCc-ccccc-----c--------cCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhc
Confidence 77765 22222 1 13677777888887775 344 46889999999998887 677777776
Q ss_pred ----------CCccEEEEecCCCCcccCCCCCCCCcCeEEEccCCCCCCCCCCC
Q 047894 1032 ----------KCLQSICIRKCPSLVSFPERGLPNTISAVYICECDKLEAPPNDM 1075 (1087)
Q Consensus 1032 ----------~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~~~p~~l 1075 (1087)
++|+.|++++ +.++.+|. +|++|+.|.+.+|......|...
T Consensus 386 ~~~~~i~~~~~~L~~L~ls~-N~l~~~~~--iP~sl~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 386 SHLAEVPELPQNLKQLHVET-NPLREFPD--IPESVEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp C-----------------------------------------------------
T ss_pred ccccccccccCcCCEEECCC-CcCCcccc--chhhHhheeCcCcccCCccccCH
Confidence 7888888888 44665543 56788888888876655544433
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.5e-24 Score=253.23 Aligned_cols=343 Identities=18% Similarity=0.212 Sum_probs=205.7
Q ss_pred CCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeec
Q 047894 577 FKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIR 656 (1087)
Q Consensus 577 ~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 656 (1087)
+.+++.|++.++.+..+|. +..+.+|++|++++|.++.+|. +.++++|++|++++|. +..+|. +.++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECC
Confidence 3456666666666666653 6666666677776666666655 6666667777766654 444444 6666666777666
Q ss_pred CCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEe
Q 047894 657 GAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDW 736 (1087)
Q Consensus 657 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 736 (1087)
+|. +..+|. ++++++|++|+...+.... . ..+..+.+|+.|.+..
T Consensus 121 ~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~----------------------------~-----~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 121 NNQ-ITDIDP-LKNLTNLNRLELSSNTISD----------------------------I-----SALSGLTSLQQLSFGN 165 (466)
T ss_dssp SSC-CCCCGG-GTTCTTCSEEEEEEEEECC----------------------------C-----GGGTTCTTCSEEEEEE
T ss_pred CCC-CCCChH-HcCCCCCCEEECCCCccCC----------------------------C-----hhhccCCcccEeecCC
Confidence 665 444443 5555555555443321100 0 0123334455555531
Q ss_pred eCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCcceeecc
Q 047894 737 VSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHLAVK 816 (1087)
Q Consensus 737 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 816 (1087)
. . ..++. +. .+++|+.|++++|... .++.+..+++|++|+++
T Consensus 166 ~-~---------------------------------~~~~~-~~--~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 166 Q-V---------------------------------TDLKP-LA--NLTTLERLDISSNKVS-DISVLAKLTNLESLIAT 207 (466)
T ss_dssp S-C---------------------------------CCCGG-GT--TCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECC
T ss_pred c-c---------------------------------cCchh-hc--cCCCCCEEECcCCcCC-CChhhccCCCCCEEEec
Confidence 1 0 00011 11 1556666666666542 23445556666666665
Q ss_pred CCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCC--CCCCCccE
Q 047894 817 GLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP--ELLPSLET 894 (1087)
Q Consensus 817 ~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p--~~l~~L~~ 894 (1087)
++... .+ .+.+.+++|+.|++.+| .++ .++ ..+++|++
T Consensus 208 ~n~l~-~~-------------------------------------~~~~~l~~L~~L~l~~n-~l~-~~~~l~~l~~L~~ 247 (466)
T 1o6v_A 208 NNQIS-DI-------------------------------------TPLGILTNLDELSLNGN-QLK-DIGTLASLTNLTD 247 (466)
T ss_dssp SSCCC-CC-------------------------------------GGGGGCTTCCEEECCSS-CCC-CCGGGGGCTTCSE
T ss_pred CCccc-cc-------------------------------------ccccccCCCCEEECCCC-Ccc-cchhhhcCCCCCE
Confidence 54211 00 00122344444444444 232 111 23455556
Q ss_pred EEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCC
Q 047894 895 LVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPAS 974 (1087)
Q Consensus 895 L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~ 974 (1087)
|++++|.-.. +..+..+++|++|++++|.+....+ +..+++|+.|++++|.. +.++
T Consensus 248 L~l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l-~~~~------- 303 (466)
T 1o6v_A 248 LDLANNQISN-------------LAPLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQL-EDIS------- 303 (466)
T ss_dssp EECCSSCCCC-------------CGGGTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCC-SCCG-------
T ss_pred EECCCCcccc-------------chhhhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcc-cCch-------
Confidence 6655553111 0114566789999999998765433 46899999999999873 3222
Q ss_pred CCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCC
Q 047894 975 LKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLP 1054 (1087)
Q Consensus 975 L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~ 1054 (1087)
.+..+++|+.|++++|.+++..+ +..+++|++|++++|++.+. ..+.++++|+.|++++|+ ++.++.....
T Consensus 304 ----~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~-l~~~~~~~~l 374 (466)
T 1o6v_A 304 ----PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ-ISDLTPLANL 374 (466)
T ss_dssp ----GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC-CCBCGGGTTC
T ss_pred ----hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCc-cCccchhhcC
Confidence 15677889999999998888665 67899999999999988654 468899999999999975 5555445556
Q ss_pred CCcCeEEEccCCCCC
Q 047894 1055 NTISAVYICECDKLE 1069 (1087)
Q Consensus 1055 ~sL~~L~i~~c~~l~ 1069 (1087)
++|+.|++++|+...
T Consensus 375 ~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 375 TRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCCEEEEC
T ss_pred CCCCEEeccCCcccC
Confidence 799999999986443
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.7e-25 Score=255.61 Aligned_cols=316 Identities=17% Similarity=0.164 Sum_probs=209.6
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEE
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHL 653 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 653 (1087)
+.++++|++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++++++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEE
Confidence 556788889999988888887 6888889999999998888886 8888899999998876 56665 8888899999
Q ss_pred eecCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeE
Q 047894 654 DIRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALT 733 (1087)
Q Consensus 654 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 733 (1087)
++++|. +..+| ++++++|+.|+...+.... + .+..+.+|+.|+
T Consensus 112 ~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-------l---------------------------~l~~l~~L~~L~ 154 (457)
T 3bz5_A 112 NCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-------I---------------------------DVSHNTQLTELD 154 (457)
T ss_dssp ECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-------C---------------------------CCTTCTTCCEEE
T ss_pred ECCCCc-CCeec--CCCCCcCCEEECCCCccce-------e---------------------------ccccCCcCCEEE
Confidence 998887 55565 7777777777543221100 0 123444566666
Q ss_pred EEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCccee
Q 047894 734 LDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHL 813 (1087)
Q Consensus 734 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 813 (1087)
++.+...... .+.. +++|+.|++++|.+.. +| ++.+++|+.|
T Consensus 155 l~~n~~~~~~-----------~~~~-------------------------l~~L~~L~ls~n~l~~-l~-l~~l~~L~~L 196 (457)
T 3bz5_A 155 CHLNKKITKL-----------DVTP-------------------------QTQLTTLDCSFNKITE-LD-VSQNKLLNRL 196 (457)
T ss_dssp CTTCSCCCCC-----------CCTT-------------------------CTTCCEEECCSSCCCC-CC-CTTCTTCCEE
T ss_pred CCCCCccccc-----------cccc-------------------------CCcCCEEECCCCccce-ec-cccCCCCCEE
Confidence 6544221110 0112 4555666666555433 33 5555566666
Q ss_pred eccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCCCCcc
Q 047894 814 AVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSLE 893 (1087)
Q Consensus 814 ~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 893 (1087)
+++++. +..++ ...+++|+.|++++.. +.+ +|...+++|+.|++++| .+++..+..+++|+
T Consensus 197 ~l~~N~-l~~~~--------l~~l~~L~~L~Ls~N~--------l~~-ip~~~l~~L~~L~l~~N-~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 197 NCDTNN-ITKLD--------LNQNIQLTFLDCSSNK--------LTE-IDVTPLTQLTYFDCSVN-PLTELDVSTLSKLT 257 (457)
T ss_dssp ECCSSC-CSCCC--------CTTCTTCSEEECCSSC--------CSC-CCCTTCTTCSEEECCSS-CCSCCCCTTCTTCC
T ss_pred ECcCCc-CCeec--------cccCCCCCEEECcCCc--------ccc-cCccccCCCCEEEeeCC-cCCCcCHHHCCCCC
Confidence 555542 11110 1123444444443321 211 12334667777777776 55543334556666
Q ss_pred EEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCC
Q 047894 894 TLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPA 973 (1087)
Q Consensus 894 ~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~ 973 (1087)
.|+++++ +|+.|++++|.....+|. ..+++|+.|++++|..+..++. -..
T Consensus 258 ~L~l~~n-------------------------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~--~~~ 307 (457)
T 3bz5_A 258 TLHCIQT-------------------------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDC--QAA 307 (457)
T ss_dssp EEECTTC-------------------------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEEC--TTC
T ss_pred EEeccCC-------------------------CCCEEECCCCccCCcccc---cccccCCEEECCCCcccceecc--CCC
Confidence 6654432 577888888988777773 4689999999999998887774 235
Q ss_pred CCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCc
Q 047894 974 SLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLE 1022 (1087)
Q Consensus 974 ~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 1022 (1087)
.|+.|.+++|++|+.|++++|++++. .+..+++|+.|++++|++.+
T Consensus 308 ~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 308 GITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB
T ss_pred cceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC
Confidence 78888999999999999999999994 37889999999999998864
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.3e-24 Score=260.51 Aligned_cols=437 Identities=16% Similarity=0.123 Sum_probs=223.1
Q ss_pred CCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCccc-CccccCCccceeeccCCCcCcccccccccCC
Q 047894 546 EHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGEL-PIPFEELRLLRFLNLADIDIKSLPESTCKLL 624 (1087)
Q Consensus 546 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~ 624 (1087)
++++.|.+.++.. ....+..|.++++|++|+|++|.++.+ |..|+++.+|++|++++|.++.+|.. .++
T Consensus 52 ~~L~~L~Ls~N~i--------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNSI--------SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMA 121 (562)
T ss_dssp TTCCEEECCSSCC--------CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCT
T ss_pred CCcCEEECCCCCc--------cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccc
Confidence 5677776654432 123344577888888888888888776 56788888888888888888888876 788
Q ss_pred CCcEEEecCCCCCccc--CcccCCCCCcCEEeecCCccccccCccCCCCCCC--CccCeeeeCccCCCCCcccccccccc
Q 047894 625 NLEILILRNCSRLIKL--PPKMRNLINLNHLDIRGAKLLKEMPCGMKELKKL--RTLSNFIVGKRETASGLEDLKCLNFL 700 (1087)
Q Consensus 625 ~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~~~~~~~~~~~~L~~L~~L 700 (1087)
+|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| +.|....+...........+..+..
T Consensus 122 ~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~- 196 (562)
T 3a79_B 122 SLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT- 196 (562)
T ss_dssp TCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-
T ss_pred cCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCc-
Confidence 88888888876 4443 4678888888888888876 332 235555555 6665544332000111122222221
Q ss_pred ccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCC-----CC
Q 047894 701 CDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-----RF 775 (1087)
Q Consensus 701 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-----~~ 775 (1087)
..+.+ .+.............+..+.+|+.|++.++... .......+..+...+.++.+.+.+.... .+
T Consensus 197 -~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 269 (562)
T 3a79_B 197 -TVLHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN-----CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269 (562)
T ss_dssp -EEEEE-EECSSSCCCCCCEEEESSEEEEEEEEEECCSTT-----HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred -ceEEE-EecCccchhhhhhhcccccceEEEecccccccc-----cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence 01111 010000000011112334456666776654210 0111222334444556666665543211 11
Q ss_pred CCCcCCcccCcccEEeeeCCCCCCCCC-CC-----CCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccc
Q 047894 776 PLWIGDPLFCKIELLELENCDNCVSLP-SL-----GRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLA 849 (1087)
Q Consensus 776 p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l-----~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~ 849 (1087)
+.+.. .++|+.|++++|...+.+| .+ +.++.|+.+++..+.. . +|.
T Consensus 270 ~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~-------------~p~---------- 321 (562)
T 3a79_B 270 FQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L-------------FSK---------- 321 (562)
T ss_dssp HHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S-------------SCH----------
T ss_pred HHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e-------------cCh----------
Confidence 22211 3477777777777655555 22 2333333332222110 0 110
Q ss_pred cccccccccccccccccCCcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccE
Q 047894 850 EWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRS 929 (1087)
Q Consensus 850 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~ 929 (1087)
. .+.. ....++|+.|++.+|.-....++..+++|++|++++|.-... ....+.++++|++
T Consensus 322 ---~---~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~ 381 (562)
T 3a79_B 322 ---E---ALYS---VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS-----------VFQGCSTLKRLQT 381 (562)
T ss_dssp ---H---HHHH---HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-----------TTTTCCSCSSCCE
T ss_pred ---h---hhhh---hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc-----------hhhhhcccCCCCE
Confidence 0 0000 000134666666665221111224556666666666532110 0123345556666
Q ss_pred EEeccCCCCCC--CchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCC
Q 047894 930 LLICNSTALKS--LPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSP 1007 (1087)
Q Consensus 930 L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l 1007 (1087)
|++++|.+... +|.. +..+++|+.|++++|.....++.. .+.++++|+.|++++|.+++..|..+.
T Consensus 382 L~L~~N~l~~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 382 LILQRNGLKNFFKVALM-TKNMSSLETLDVSLNSLNSHAYDR---------TCAWAESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp EECCSSCCCBTTHHHHT-TTTCTTCCEEECTTSCCBSCCSSC---------CCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred EECCCCCcCCcccchhh-hcCCCCCCEEECCCCcCCCccChh---------hhcCcccCCEEECCCCCCCcchhhhhc--
Confidence 66666664431 1222 345666777777666532212221 133445666666666666555444332
Q ss_pred CCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCC--CCCCCcCeEEEccCC
Q 047894 1008 VMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPER--GLPNTISAVYICECD 1066 (1087)
Q Consensus 1008 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 1066 (1087)
++|++|++++|.+. .+|..+.++++|++|++++ +.++.+|.. ...++|+.|++++|+
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 56666666666554 5555555666666666666 356666653 223566666666665
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.7e-24 Score=252.97 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=83.0
Q ss_pred CCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCC
Q 047894 925 ANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSS 1004 (1087)
Q Consensus 925 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~ 1004 (1087)
++|++|++++|.+....+..+ ..+++|+.|++++|..-...+. .+.++++|+.|++++|.+++..+..+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQNEINKIDDN----------AFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTT----------TTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred cCceEEEecCccccccchhhc-ccCCCCCEEECCCCcccccChh----------HhcCcccCCEEECCCCccCCcChhHh
Confidence 466777777776655444443 5667777777776653221111 23345666666667676666656666
Q ss_pred CCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCC--CCCCcCeEEEccCCCCCCCC
Q 047894 1005 SSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERG--LPNTISAVYICECDKLEAPP 1072 (1087)
Q Consensus 1005 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~i~~c~~l~~~p 1072 (1087)
..+++|++|++++|.+....|..+.++++|++|++++ +.++.+|... ..++|+.|++++|+.....|
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6677777777777766655566677777777777776 4566666532 23567777777666444333
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.1e-23 Score=258.13 Aligned_cols=475 Identities=16% Similarity=0.117 Sum_probs=254.1
Q ss_pred cccEEEecCCCCcccC-ccccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCCCCCcccCc-ccCCCCCcCEEee
Q 047894 579 RLRMLSLQGYCIGELP-IPFEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNCSRLIKLPP-KMRNLINLNHLDI 655 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l 655 (1087)
.+++|||++|.++.+| ..|.++++|++|+|++|.|+.+|. .|.+|++|++|+|++|. +..+|. .|.+|++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEEC
Confidence 5677777777776664 357777777777777777776654 56777777777777765 555554 3567777777777
Q ss_pred cCCccccccCcc-CCCCCCCCccCeeeeCccC--CCCCccccccccccccceeecCcccCCChhhHHHHhccCCC-CCCe
Q 047894 656 RGAKLLKEMPCG-MKELKKLRTLSNFIVGKRE--TASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKH-NLEA 731 (1087)
Q Consensus 656 ~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~--~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~-~L~~ 731 (1087)
++|. +..+|.. ++++++|++|+........ .+..+..++.|+.|. +....+.... ......+.+.. ....
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~--L~~N~l~~~~---~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD--LSSNKIQSIY---CTDLRVLHQMPLLNLS 205 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE--CCSSCCCEEC---GGGGHHHHTCTTCCCE
T ss_pred CCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc--ccCccccccc---cccccchhhhhhhhhh
Confidence 7776 5555543 6667777776544332211 011122222222221 1111111000 00000111111 1112
Q ss_pred eEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCC--CCCCCcCCcccCcccEEeeeCCC--CCCCCC-----
Q 047894 732 LTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA--RFPLWIGDPLFCKIELLELENCD--NCVSLP----- 802 (1087)
Q Consensus 732 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~L~~~~--~~~~l~----- 802 (1087)
+.++.+.... ..........+..+.+.+.... ..+..+.. +..++...+..+. ....+.
T Consensus 206 ~~ls~n~l~~----------i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~--l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 206 LDLSLNPMNF----------IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG--LAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp EECTTCCCCE----------ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHT--TTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred hhcccCcccc----------cCcccccchhhhhhhhhcccccccccchhhcC--Cccccccccccccccccccccccccc
Confidence 2221111000 0000011112233333332111 00111111 3333333332211 111111
Q ss_pred CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCcc
Q 047894 803 SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLS 882 (1087)
Q Consensus 803 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 882 (1087)
.+..+..+..+.+............ ......++.++.+.+.+.... ...+...+..|+.|.+.+| .+.
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~--------~~~~~~~~~~L~~L~l~~~-~~~ 341 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGI---IDLFNCLTNVSSFSLVSVTIE--------RVKDFSYNFGWQHLELVNC-KFG 341 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEEC---TTTTGGGTTCSEEEEESCEEE--------ECGGGGSCCCCSEEEEESC-EES
T ss_pred ccccccchhhhhhhhhhhcccccch---hhhhhhhcccccccccccccc--------cccccccchhhhhhhcccc-ccc
Confidence 2222333333333221100000000 000112344555554443221 1111234668999999988 555
Q ss_pred ccCCCCCCCccEEEEeecCCcc-ccCCCCCcccEEEeccCC------------CcCCccEEEeccCCCCCCCchhhhcCC
Q 047894 883 GELPELLPSLETLVVSKCGKLV-VPLSCYPMLCRLEVDECK------------ELANLRSLLICNSTALKSLPEEMMENN 949 (1087)
Q Consensus 883 ~~~p~~l~~L~~L~l~~~~~~~-~~~~~~~~L~~l~~~~~~------------~l~~L~~L~l~~~~~~~~~~~~~~~~l 949 (1087)
...+..++.|+.+.+.++.... .....+++|+.+.+.... .+.+|+.|++..+..... +.. +..+
T Consensus 342 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~-~~~l 419 (635)
T 4g8a_A 342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSN-FLGL 419 (635)
T ss_dssp SCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSC-CTTC
T ss_pred CcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-ccc-cccc
Confidence 3444567888999888774322 223345667766654422 345778888877764332 222 2467
Q ss_pred CCCceEEeccCCCCcccccCCC--CCCCCEEEEe-------------cccCccccccccCCCC-CCCCCCCCCCCCccEE
Q 047894 950 SQLEKLYIRDCESLTFIARRRL--PASLKRLEIE-------------NCEKLQRLFDDEGDAS-SSSPSSSSSPVMLQLL 1013 (1087)
Q Consensus 950 ~~L~~L~l~~c~~l~~~~~~~l--~~~L~~L~l~-------------~c~~L~~l~l~~n~~~-~~~~~~~~~l~~L~~L 1013 (1087)
++|+.+++++|......+...+ ...++.+.+. +++.|+.+++++|.+. +..|..+..+++|++|
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 8888888887764443332111 1234444433 3467788888888644 4467778899999999
Q ss_pred EEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCC--CCCcCeEEEccCCCCCCCCCCCCCC-CCCCcEEeC
Q 047894 1014 RIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGL--PNTISAVYICECDKLEAPPNDMHKL-NSLQSLSIK 1087 (1087)
Q Consensus 1014 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~~l~~~p~~l~~l-~~L~~l~i~ 1087 (1087)
++++|.+.+..|..+.++++|++|++++ ++++.++...+ .++|+.|++++|......|+.+..+ ++|+.|+++
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 9999999888888999999999999999 57888887433 4799999999998777778888888 689999874
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.9e-23 Score=244.01 Aligned_cols=341 Identities=20% Similarity=0.256 Sum_probs=201.0
Q ss_pred CCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCC
Q 047894 545 IEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLL 624 (1087)
Q Consensus 545 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~ 624 (1087)
++++++|...+.... .++. +..+++|++|++++|.+..+|. ++++.+|++|++++|.+..+|. +++++
T Consensus 45 l~~l~~L~l~~~~i~---------~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK---------SIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLT 112 (466)
T ss_dssp HHTCCEEECCSSCCC---------CCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred hccccEEecCCCCCc---------cCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCC
Confidence 456777766544321 1122 5678999999999999999876 9999999999999999999887 99999
Q ss_pred CCcEEEecCCCCCcccCcccCCCCCcCEEeecCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccce
Q 047894 625 NLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDEL 704 (1087)
Q Consensus 625 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l 704 (1087)
+|++|++++|. +..+|. +.++++|++|++++|. +..+| .++++++|+.|..... .
T Consensus 113 ~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~-~-------------------- 167 (466)
T 1o6v_A 113 NLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQ-V-------------------- 167 (466)
T ss_dssp TCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEES-C--------------------
T ss_pred CCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCc-c--------------------
Confidence 99999999986 677776 9999999999999998 66665 4888888888864210 0
Q ss_pred eecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCccc
Q 047894 705 CIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLF 784 (1087)
Q Consensus 705 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l 784 (1087)
... ..+..+.+|+.|+++++.... ++. +. .+
T Consensus 168 --------~~~-----~~~~~l~~L~~L~l~~n~l~~---------------------------------~~~-l~--~l 198 (466)
T 1o6v_A 168 --------TDL-----KPLANLTTLERLDISSNKVSD---------------------------------ISV-LA--KL 198 (466)
T ss_dssp --------CCC-----GGGTTCTTCCEEECCSSCCCC---------------------------------CGG-GG--GC
T ss_pred --------cCc-----hhhccCCCCCEEECcCCcCCC---------------------------------Chh-hc--cC
Confidence 000 014556677888776543211 111 11 25
Q ss_pred CcccEEeeeCCCCCCCCCCCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeecccccccccccccccccccc
Q 047894 785 CKIELLELENCDNCVSLPSLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHV 864 (1087)
Q Consensus 785 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~ 864 (1087)
++|+.|++++|..... ++++.+++|+.|+++++. +..++ ....+++|+.|++++.. +.+..+.
T Consensus 199 ~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~-------~l~~l~~L~~L~l~~n~--------l~~~~~~ 261 (466)
T 1o6v_A 199 TNLESLIATNNQISDI-TPLGILTNLDELSLNGNQ-LKDIG-------TLASLTNLTDLDLANNQ--------ISNLAPL 261 (466)
T ss_dssp TTCSEEECCSSCCCCC-GGGGGCTTCCEEECCSSC-CCCCG-------GGGGCTTCSEEECCSSC--------CCCCGGG
T ss_pred CCCCEEEecCCccccc-ccccccCCCCEEECCCCC-cccch-------hhhcCCCCCEEECCCCc--------cccchhh
Confidence 6677777777665432 236666777777776652 11110 00113344444443321 1111112
Q ss_pred ccCCcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchh
Q 047894 865 EIFPRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEE 944 (1087)
Q Consensus 865 ~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 944 (1087)
..+++|+.|++.+| .+.+ ++ .+..+++|++|++++|.+....+
T Consensus 262 ~~l~~L~~L~l~~n-~l~~-~~---------------------------------~~~~l~~L~~L~L~~n~l~~~~~-- 304 (466)
T 1o6v_A 262 SGLTKLTELKLGAN-QISN-IS---------------------------------PLAGLTALTNLELNENQLEDISP-- 304 (466)
T ss_dssp TTCTTCSEEECCSS-CCCC-CG---------------------------------GGTTCTTCSEEECCSSCCSCCGG--
T ss_pred hcCCCCCEEECCCC-ccCc-cc---------------------------------cccCCCccCeEEcCCCcccCchh--
Confidence 23455555555555 3331 11 12334455555555555433222
Q ss_pred hhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCccc
Q 047894 945 MMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESI 1024 (1087)
Q Consensus 945 ~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 1024 (1087)
+..+++|+.|++++|.... .+. +..+++|+.|++++|.+++. ..+..+++|++|++++|++.+..
T Consensus 305 -~~~l~~L~~L~L~~n~l~~-~~~-----------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISD-ISP-----------VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSC-CGG-----------GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCG
T ss_pred -hcCCCCCCEEECcCCcCCC-chh-----------hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccc
Confidence 2345556666665554211 110 23445555555555555543 34455666666666666665544
Q ss_pred CCCCCCCCCccEEEEecC
Q 047894 1025 PDGLPNLKCLQSICIRKC 1042 (1087)
Q Consensus 1025 p~~l~~l~~L~~L~l~~c 1042 (1087)
| +..+++|+.|++++|
T Consensus 370 ~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 370 P--LANLTRITQLGLNDQ 385 (466)
T ss_dssp G--GTTCTTCCEEECCCE
T ss_pred h--hhcCCCCCEEeccCC
Confidence 4 556666666666664
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1e-23 Score=243.37 Aligned_cols=338 Identities=17% Similarity=0.188 Sum_probs=171.3
Q ss_pred CccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCc-------------CEEeecCCcc
Q 047894 594 PIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINL-------------NHLDIRGAKL 660 (1087)
Q Consensus 594 p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L-------------~~L~l~~~~~ 660 (1087)
|+.+ +..+|++|++++|.+..+|.+++++++|++|++++|.....+|..++++.+| ++|++++|.
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~- 82 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG- 82 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-
Confidence 4555 4589999999999999999999999999999999988667899999999876 888888887
Q ss_pred ccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCC
Q 047894 661 LKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQF 740 (1087)
Q Consensus 661 ~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 740 (1087)
+..+|.. .++|+.|+...... . ... ....+|+.|+++++...
T Consensus 83 l~~lp~~---~~~L~~L~l~~n~l-------~------------------~lp----------~~~~~L~~L~l~~n~l~ 124 (454)
T 1jl5_A 83 LSSLPEL---PPHLESLVASCNSL-------T------------------ELP----------ELPQSLKSLLVDNNNLK 124 (454)
T ss_dssp CSCCCSC---CTTCSEEECCSSCC-------S------------------SCC----------CCCTTCCEEECCSSCCS
T ss_pred cccCCCC---cCCCCEEEccCCcC-------C------------------ccc----------cccCCCcEEECCCCccC
Confidence 6666652 24555554321110 0 000 01145677776654321
Q ss_pred CCCcchhhHHHhhhccCC-CCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCcceeeccCCC
Q 047894 741 GNSRDVAVEEHVLDILQP-HKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHLAVKGLK 819 (1087)
Q Consensus 741 ~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 819 (1087)
. +.. +++|+.|.++++....+|. +.. +++|+.|++++|.... +|.. .++|++|+++++.
T Consensus 125 ~--------------l~~~~~~L~~L~L~~n~l~~lp~-~~~--l~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 125 A--------------LSDLPPLLEYLGVSNNQLEKLPE-LQN--SSFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQ 184 (454)
T ss_dssp C--------------CCSCCTTCCEEECCSSCCSSCCC-CTT--CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSC
T ss_pred c--------------ccCCCCCCCEEECcCCCCCCCcc-cCC--CCCCCEEECCCCcCcc-cCCC--cccccEEECcCCc
Confidence 1 111 1466677776666666663 433 6667777777766543 3321 2466777766653
Q ss_pred CceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCC--CCCCccEEEE
Q 047894 820 KLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPE--LLPSLETLVV 897 (1087)
Q Consensus 820 ~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~--~l~~L~~L~l 897 (1087)
++.++ .+ ..+++|+.|.+.+.. +.+. + ...++|+.|++.+| .++ .+|. .+++|++|++
T Consensus 185 -l~~l~-~~------~~l~~L~~L~l~~N~--------l~~l-~-~~~~~L~~L~l~~n-~l~-~lp~~~~l~~L~~L~l 244 (454)
T 1jl5_A 185 -LEELP-EL------QNLPFLTAIYADNNS--------LKKL-P-DLPLSLESIVAGNN-ILE-ELPELQNLPFLTTIYA 244 (454)
T ss_dssp -CSSCC-CC------TTCTTCCEEECCSSC--------CSSC-C-CCCTTCCEEECCSS-CCS-SCCCCTTCTTCCEEEC
T ss_pred -CCcCc-cc------cCCCCCCEEECCCCc--------CCcC-C-CCcCcccEEECcCC-cCC-cccccCCCCCCCEEEC
Confidence 22222 11 225666666665532 2210 0 12346666666666 444 4442 3556666666
Q ss_pred eecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCE
Q 047894 898 SKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKR 977 (1087)
Q Consensus 898 ~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~ 977 (1087)
++|.-... + ..+++|++|++++|.+.. +|. .+++|+.|++++|. ++.++ .+|++|+.
T Consensus 245 ~~N~l~~l-----~----------~~~~~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~-l~~l~--~~~~~L~~ 301 (454)
T 1jl5_A 245 DNNLLKTL-----P----------DLPPSLEALNVRDNYLTD-LPE----LPQSLTFLDVSENI-FSGLS--ELPPNLYY 301 (454)
T ss_dssp CSSCCSSC-----C----------SCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSC-CSEES--CCCTTCCE
T ss_pred CCCcCCcc-----c----------ccccccCEEECCCCcccc-cCc----ccCcCCEEECcCCc-cCccc--CcCCcCCE
Confidence 66521110 0 123577778887777543 443 24678888888775 33332 34456666
Q ss_pred EEEecc---------cCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecC
Q 047894 978 LEIENC---------EKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKC 1042 (1087)
Q Consensus 978 L~l~~c---------~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c 1042 (1087)
|+++++ ++|+.|++++|++++ +|.. +++|++|++++|.+. .+|. .+++|++|++++|
T Consensus 302 L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp EECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred EECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence 655543 356666666666665 2322 456666666666554 4444 3566666666663
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.9e-23 Score=244.09 Aligned_cols=369 Identities=17% Similarity=0.090 Sum_probs=195.7
Q ss_pred CcccEEEecCCCCccc-CccccCCccceeeccCCCcCc-cc-ccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEe
Q 047894 578 KRLRMLSLQGYCIGEL-PIPFEELRLLRFLNLADIDIK-SL-PESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLD 654 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 654 (1087)
++|++|+|++|.++.+ |..|+++.+|++|++++|.+. .+ |..+.++++|++|+|++|......|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5678888888887666 667888888888888888775 44 45678888888888888764444577788888888888
Q ss_pred ecCCccccccCcc--CCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCee
Q 047894 655 IRGAKLLKEMPCG--MKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEAL 732 (1087)
Q Consensus 655 l~~~~~~~~~p~~--i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 732 (1087)
+++|.....+|.. ++++++|++|+...+....... ...+..+.+|+.|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------------~~~~~~l~~L~~L 159 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP------------------------------ASFFLNMRRFHVL 159 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC------------------------------CGGGGGCTTCCEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCc------------------------------ccccCCCCcccEE
Confidence 8887732223433 6667777776543222111000 0012334455555
Q ss_pred EEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC---------C
Q 047894 733 TLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP---------S 803 (1087)
Q Consensus 733 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~---------~ 803 (1087)
+++++..... .|..+......+|+.|++++|......+ .
T Consensus 160 ~L~~n~l~~~--------------------------------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 160 DLTFNKVKSI--------------------------------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp ECTTCCBSCC--------------------------------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred eCCCCccccc--------------------------------ChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 5543322111 1111111111344555555444322111 1
Q ss_pred CCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccc
Q 047894 804 LGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSG 883 (1087)
Q Consensus 804 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 883 (1087)
+..+++|++|+++++......+..+... ...++|+.+.+.+........ . ...++.+.... +.
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~---~----~~~~~~~~~~~------~~- 270 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDA---IAGTKIQSLILSNSYNMGSSF---G----HTNFKDPDNFT------FK- 270 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHH---TTTCCEEEEECTTCTTTSCCT---T----CCSSCCCCTTT------TG-
T ss_pred ccccceeeeEecCCCcccccchhhhhcc---ccccceeeEeecccccccccc---c----hhhhccCcccc------cc-
Confidence 2233445555554442211111111000 001233333333321111000 0 00000000000 00
Q ss_pred cCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCC
Q 047894 884 ELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESL 963 (1087)
Q Consensus 884 ~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 963 (1087)
....++|++|++++|. +..+....+..+++|++|++++|.+....+..+ ..+++|+.|++++|..-
T Consensus 271 --~~~~~~L~~L~l~~n~-----------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 271 --GLEASGVKTCDLSKSK-----------IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-WGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp --GGTTSCCCEEECCSSC-----------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCC
T ss_pred --cccccCceEEEecCcc-----------ccccchhhcccCCCCCEEECCCCcccccChhHh-cCcccCCEEECCCCccC
Confidence 0012345555555542 111222334556677777777777655444443 56788888888877532
Q ss_pred cccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCC
Q 047894 964 TFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCP 1043 (1087)
Q Consensus 964 ~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~ 1043 (1087)
...+. .+.++++|+.|++++|++++..|..+..+++|++|++++|++....+..+..+++|++|++++|+
T Consensus 337 ~~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 337 SIDSR----------MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECGG----------GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcChh----------HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 21111 23456777888888888877777788888888888888888876555567888888888888866
Q ss_pred CCcccC
Q 047894 1044 SLVSFP 1049 (1087)
Q Consensus 1044 ~l~~lp 1049 (1087)
.-...|
T Consensus 407 l~~~~~ 412 (455)
T 3v47_A 407 WDCSCP 412 (455)
T ss_dssp BCCCTT
T ss_pred cccCCC
Confidence 444444
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.4e-23 Score=240.49 Aligned_cols=367 Identities=14% Similarity=0.129 Sum_probs=235.0
Q ss_pred cccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccc
Q 047894 542 FYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTC 621 (1087)
Q Consensus 542 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~ 621 (1087)
+..+++|+.|.+.++... .. + .+..+++|++|++++|.++.+| ++.+.+|++|++++|.++.+| ++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~--------~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSIT--------DM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp HHHHTTCCEEECCSSCCC--------CC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred hhHcCCCCEEEccCCCcc--------cC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence 456778888877654321 11 2 3678899999999999998886 899999999999999999886 88
Q ss_pred cCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccc
Q 047894 622 KLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLC 701 (1087)
Q Consensus 622 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~ 701 (1087)
++++|++|++++|. +..+| ++++++|++|++++|. +..++ ++++++|+.|+...+.... ...
T Consensus 104 ~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~-~~~----------- 165 (457)
T 3bz5_A 104 PLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT-KLD----------- 165 (457)
T ss_dssp TCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC-CCC-----------
T ss_pred CCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc-ccc-----------
Confidence 99999999999986 66676 8999999999999998 66664 7888888888654332111 001
Q ss_pred cceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCC
Q 047894 702 DELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGD 781 (1087)
Q Consensus 702 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 781 (1087)
+..+.+|+.|+++++.... +. +...++|+.|.++++....++ +.
T Consensus 166 ---------------------~~~l~~L~~L~ls~n~l~~-----------l~-l~~l~~L~~L~l~~N~l~~~~--l~- 209 (457)
T 3bz5_A 166 ---------------------VTPQTQLTTLDCSFNKITE-----------LD-VSQNKLLNRLNCDTNNITKLD--LN- 209 (457)
T ss_dssp ---------------------CTTCTTCCEEECCSSCCCC-----------CC-CTTCTTCCEEECCSSCCSCCC--CT-
T ss_pred ---------------------cccCCcCCEEECCCCccce-----------ec-cccCCCCCEEECcCCcCCeec--cc-
Confidence 2334566666666543321 11 444566777777776655553 33
Q ss_pred cccCcccEEeeeCCCCCCCCCCCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccc--cccccccccccc
Q 047894 782 PLFCKIELLELENCDNCVSLPSLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFEN--LAEWEHWDTDIK 859 (1087)
Q Consensus 782 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~--l~~l~~~~~~~~ 859 (1087)
.+++|+.|++++|.+.. +| ++.+++|+.|+++++. +..++ ...+++|+.|.+.. +..++...+...
T Consensus 210 -~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~-l~~~~--------~~~l~~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 210 -QNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP-LTELD--------VSTLSKLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp -TCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--------CTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred -cCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCc-CCCcC--------HHHCCCCCEEeccCCCCCEEECCCCccC
Confidence 27788888888887755 55 7788888888888763 22221 12366666665432 111111112222
Q ss_pred cccccccCCcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCC
Q 047894 860 GNVHVEIFPRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALK 939 (1087)
Q Consensus 860 ~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~ 939 (1087)
+..|.+.+++|+.|++++|+.+. .+|... +.|+.+++. ++++|++|++++|.+.+
T Consensus 278 ~~~~~~~l~~L~~L~Ls~n~~l~-~l~~~~---------------------~~L~~L~l~---~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 278 IYFQAEGCRKIKELDVTHNTQLY-LLDCQA---------------------AGITELDLS---QNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CEEECTTCTTCCCCCCTTCTTCC-EEECTT---------------------CCCSCCCCT---TCTTCCEEECTTCCCSC
T ss_pred CcccccccccCCEEECCCCcccc-eeccCC---------------------CcceEechh---hcccCCEEECCCCcccc
Confidence 22233344555555555553332 333333 334444333 33578899999999766
Q ss_pred CCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccC
Q 047894 940 SLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCR 1019 (1087)
Q Consensus 940 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 1019 (1087)
++ +..+++|+.|++++|. +.+++.|..++++.|.+.+. ..+.+|..+++++|.
T Consensus 333 -l~---l~~l~~L~~L~l~~N~------------------l~~l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~ 385 (457)
T 3bz5_A 333 -LD---VSHNTKLKSLSCVNAH------------------IQDFSSVGKIPALNNNFEAE-----GQTITMPKETLTNNS 385 (457)
T ss_dssp -CC---CTTCTTCSEEECCSSC------------------CCBCTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTB
T ss_pred -cc---cccCCcCcEEECCCCC------------------CCCccccccccccCCcEEec-----ceeeecCccccccCc
Confidence 43 4679999999999876 22235666677777766664 245567777888888
Q ss_pred CCcccCCCC-CCCCCccEEEEe
Q 047894 1020 KLESIPDGL-PNLKCLQSICIR 1040 (1087)
Q Consensus 1020 ~~~~~p~~l-~~l~~L~~L~l~ 1040 (1087)
+.+.+|..+ ....++.....+
T Consensus 386 l~g~ip~~~~~~~~~~~~~~~~ 407 (457)
T 3bz5_A 386 LTIAVSPDLLDQFGNPMNIEPG 407 (457)
T ss_dssp EEEECCTTCBCTTSCCCEEEES
T ss_pred EEEEcChhHhcccCceeeccCC
Confidence 877777543 333444444333
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=5.5e-23 Score=230.58 Aligned_cols=97 Identities=21% Similarity=0.362 Sum_probs=75.2
Q ss_pred CCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEe
Q 047894 575 PKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLD 654 (1087)
Q Consensus 575 ~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 654 (1087)
..+++|+.|+++++.+..+|. ++.+++|++|++++|.++.+|. +..+++|++|++++|. +..+| .+.++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEE
Confidence 456788999999998888864 8889999999999999988877 8899999999999875 66666 488899999999
Q ss_pred ecCCccccccCccCCCCCCCCcc
Q 047894 655 IRGAKLLKEMPCGMKELKKLRTL 677 (1087)
Q Consensus 655 l~~~~~~~~~p~~i~~L~~L~~L 677 (1087)
+++|. +..+|. +..+++|+.|
T Consensus 117 l~~n~-i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 117 LNEDN-ISDISP-LANLTKMYSL 137 (347)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEE
T ss_pred CcCCc-ccCchh-hccCCceeEE
Confidence 98887 444443 4444444433
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.8e-21 Score=228.47 Aligned_cols=312 Identities=20% Similarity=0.214 Sum_probs=211.8
Q ss_pred cEEEecCCCCcccCccccCCccceeeccCCCcCccc-ccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCCc
Q 047894 581 RMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSL-PESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAK 659 (1087)
Q Consensus 581 r~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 659 (1087)
+.++.+++.++.+|..+. .+|++|+|++|.++.+ |..+.++++|++|+|++|......|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 567777777777877664 4788888888888876 4578888888888888876433446778888888888888876
Q ss_pred cccccCcc-CCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeC
Q 047894 660 LLKEMPCG-MKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVS 738 (1087)
Q Consensus 660 ~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 738 (1087)
+..+|.+ ++++++|++|+. +.+.
T Consensus 92 -l~~~~~~~~~~l~~L~~L~L-------------------------------------------------------s~n~ 115 (477)
T 2id5_A 92 -LKLIPLGVFTGLSNLTKLDI-------------------------------------------------------SENK 115 (477)
T ss_dssp -CCSCCTTSSTTCTTCCEEEC-------------------------------------------------------TTSC
T ss_pred -CCccCcccccCCCCCCEEEC-------------------------------------------------------CCCc
Confidence 5555543 344444444432 1110
Q ss_pred CCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccC
Q 047894 739 QFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKG 817 (1087)
Q Consensus 739 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~ 817 (1087)
.. ...|..+.. +++|+.|++++|.+....+ .++.+++|+.|++++
T Consensus 116 i~--------------------------------~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 116 IV--------------------------------ILLDYMFQD--LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CC--------------------------------EECTTTTTT--CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred cc--------------------------------cCChhHccc--cccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 00 000112222 6778888888887655444 678888888888877
Q ss_pred CCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCC---CCCCCccE
Q 047894 818 LKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP---ELLPSLET 894 (1087)
Q Consensus 818 ~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~ 894 (1087)
+. +..++.. . ...+++|+.|++.+| .+.+..+ ..+++|++
T Consensus 162 n~-l~~~~~~------------------------------~-----l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~ 204 (477)
T 2id5_A 162 CN-LTSIPTE------------------------------A-----LSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKV 204 (477)
T ss_dssp CC-CSSCCHH------------------------------H-----HTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCE
T ss_pred Cc-CcccChh------------------------------H-----hcccCCCcEEeCCCC-cCcEeChhhcccCcccce
Confidence 52 1111000 0 123678888888887 5553322 35788999
Q ss_pred EEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCC
Q 047894 895 LVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPAS 974 (1087)
Q Consensus 895 L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~ 974 (1087)
|++++|..+.. +. ..+....+|++|++++|.+. .+|...+..+++|+.|++++|. +..++..
T Consensus 205 L~l~~~~~~~~----------~~-~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~----- 266 (477)
T 2id5_A 205 LEISHWPYLDT----------MT-PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEGS----- 266 (477)
T ss_dssp EEEECCTTCCE----------EC-TTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSC-CCEECTT-----
T ss_pred eeCCCCccccc----------cC-cccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCc-CCccChh-----
Confidence 99998854332 11 11222348999999999865 5665555789999999999987 3333221
Q ss_pred CCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCC
Q 047894 975 LKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCP 1043 (1087)
Q Consensus 975 L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~ 1043 (1087)
.+.++++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++++
T Consensus 267 ----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 267 ----MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ----SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ----hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 25567888999999999998888888999999999999998876656677889999999999866
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2e-21 Score=221.41 Aligned_cols=101 Identities=20% Similarity=0.342 Sum_probs=78.1
Q ss_pred CCCcccEEEecCCCCcccCcc-ccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCCCCCcccCcccCCCCCcCEE
Q 047894 576 KFKRLRMLSLQGYCIGELPIP-FEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNCSRLIKLPPKMRNLINLNHL 653 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 653 (1087)
.+.++++|+++++.++.+|.. +..+++|++|++++|.++.+|. .+..+++|++|++++|......|..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 357889999999988888766 6888999999999999887764 78899999999999887433345568889999999
Q ss_pred eecCCccccccCcc-CCCCCCCCcc
Q 047894 654 DIRGAKLLKEMPCG-MKELKKLRTL 677 (1087)
Q Consensus 654 ~l~~~~~~~~~p~~-i~~L~~L~~L 677 (1087)
++++|. +..+|.+ ++++++|++|
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEE
Confidence 999887 5566654 2455555544
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=3.3e-21 Score=232.04 Aligned_cols=304 Identities=15% Similarity=0.121 Sum_probs=186.1
Q ss_pred CCcccEEEecCCCCcccCcc-ccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEe
Q 047894 577 FKRLRMLSLQGYCIGELPIP-FEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLD 654 (1087)
Q Consensus 577 ~~~Lr~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 654 (1087)
+.++++|+++++.+..+|.. ++.+++|++|+|++|.++.+|. .++.+++|++|+|++|......|..++++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56788999999888888765 6788899999999999887764 888999999999998874333344578899999999
Q ss_pred ecCCccccccCcc-CCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeE
Q 047894 655 IRGAKLLKEMPCG-MKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALT 733 (1087)
Q Consensus 655 l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 733 (1087)
+++|. +..+|.+ ++++++|++|+.
T Consensus 130 L~~n~-l~~l~~~~~~~l~~L~~L~L------------------------------------------------------ 154 (597)
T 3oja_B 130 LERND-LSSLPRGIFHNTPKLTTLSM------------------------------------------------------ 154 (597)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEEC------------------------------------------------------
T ss_pred eeCCC-CCCCCHHHhccCCCCCEEEe------------------------------------------------------
Confidence 98887 5566654 245554444432
Q ss_pred EEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCccee
Q 047894 734 LDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHL 813 (1087)
Q Consensus 734 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 813 (1087)
+++... ...|.++.. +++|+.|++++|.+.. + .++.+++|+.|
T Consensus 155 -s~N~l~--------------------------------~~~~~~~~~--l~~L~~L~L~~N~l~~-~-~~~~l~~L~~L 197 (597)
T 3oja_B 155 -SNNNLE--------------------------------RIEDDTFQA--TTSLQNLQLSSNRLTH-V-DLSLIPSLFHA 197 (597)
T ss_dssp -CSSCCC--------------------------------BCCTTTTTT--CTTCCEEECTTSCCSB-C-CGGGCTTCSEE
T ss_pred -eCCcCC--------------------------------CCChhhhhc--CCcCcEEECcCCCCCC-c-Chhhhhhhhhh
Confidence 111000 001222222 5666666666665432 1 24445555555
Q ss_pred eccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCCCCcc
Q 047894 814 AVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSLE 893 (1087)
Q Consensus 814 ~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 893 (1087)
+++++. +.+ ....++|+.|++++| .+....+...++|+
T Consensus 198 ~l~~n~--------------------------------------l~~---l~~~~~L~~L~ls~n-~l~~~~~~~~~~L~ 235 (597)
T 3oja_B 198 NVSYNL--------------------------------------LST---LAIPIAVEELDASHN-SINVVRGPVNVELT 235 (597)
T ss_dssp ECCSSC--------------------------------------CSE---EECCTTCSEEECCSS-CCCEEECSCCSCCC
T ss_pred hcccCc--------------------------------------ccc---ccCCchhheeeccCC-cccccccccCCCCC
Confidence 554431 111 112456788888877 55422233446777
Q ss_pred EEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCC
Q 047894 894 TLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPA 973 (1087)
Q Consensus 894 ~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~ 973 (1087)
.|++++|.-.. ...+..+++|++|++++|.+....|..+ ..+++|+.|++++|. +..++.
T Consensus 236 ~L~L~~n~l~~-------------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~----- 295 (597)
T 3oja_B 236 ILKLQHNNLTD-------------TAWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNR-LVALNL----- 295 (597)
T ss_dssp EEECCSSCCCC-------------CGGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSC-CCEEEC-----
T ss_pred EEECCCCCCCC-------------ChhhccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCC-CCCCCc-----
Confidence 77777763211 1344556677778888777665555554 567778888877765 222221
Q ss_pred CCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCC
Q 047894 974 SLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCP 1043 (1087)
Q Consensus 974 ~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~ 1043 (1087)
.+..+++|+.|++++|.+.. +|..+..+++|++|++++|.+... | +..+++|+.|++++|+
T Consensus 296 -----~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 296 -----YGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -----SSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSC
T ss_pred -----ccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCC
Confidence 12335566666666666663 444455666777777777766432 2 4556677777777654
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=8.1e-21 Score=222.88 Aligned_cols=297 Identities=20% Similarity=0.203 Sum_probs=188.2
Q ss_pred CcccEEEecCCCCccc-CccccCCccceeeccCCCcCccc-ccccccCCCCcEEEecCCCCCcccCcc-cCCCCCcCEEe
Q 047894 578 KRLRMLSLQGYCIGEL-PIPFEELRLLRFLNLADIDIKSL-PESTCKLLNLEILILRNCSRLIKLPPK-MRNLINLNHLD 654 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 654 (1087)
+.+++|+|++|.++.+ |..|.++.+|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|.. +.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 5789999999999887 56899999999999999999977 7789999999999999976 6777754 78999999999
Q ss_pred ecCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEE
Q 047894 655 IRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTL 734 (1087)
Q Consensus 655 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 734 (1087)
+++|......|..+.++++|+.|....+.... .
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------------~---------------- 143 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-------------------------------I---------------- 143 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-------------------------------E----------------
T ss_pred CCCCccccCChhHccccccCCEEECCCCccce-------------------------------e----------------
Confidence 99998433334456666666666432111000 0
Q ss_pred EeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCccee
Q 047894 735 DWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHL 813 (1087)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 813 (1087)
.|..+.. +++|+.|++++|.+....+ .++.+++|+.|
T Consensus 144 ----------------------------------------~~~~~~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 144 ----------------------------------------SHRAFSG--LNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp ----------------------------------------CTTSSTT--CTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred ----------------------------------------ChhhccC--CCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 0011111 3444444444444322111 24444555555
Q ss_pred eccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCC---CCC
Q 047894 814 AVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPE---LLP 890 (1087)
Q Consensus 814 ~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~ 890 (1087)
+++++.. ..++... ...+++|+.|++.+|+.+. .+|. ...
T Consensus 182 ~l~~n~i-~~~~~~~-----------------------------------~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~ 224 (477)
T 2id5_A 182 RLRHLNI-NAIRDYS-----------------------------------FKRLYRLKVLEISHWPYLD-TMTPNCLYGL 224 (477)
T ss_dssp EEESCCC-CEECTTC-----------------------------------SCSCTTCCEEEEECCTTCC-EECTTTTTTC
T ss_pred eCCCCcC-cEeChhh-----------------------------------cccCcccceeeCCCCcccc-ccCcccccCc
Confidence 5544321 1110000 0113344444444443222 2221 122
Q ss_pred CccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCC
Q 047894 891 SLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRR 970 (1087)
Q Consensus 891 ~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 970 (1087)
+|++|++++|.- +.+....+..+++|++|++++|.+.. ++...+..+++|+.|++++|......+.
T Consensus 225 ~L~~L~l~~n~l-----------~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 290 (477)
T 2id5_A 225 NLTSLSITHCNL-----------TAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPY-- 290 (477)
T ss_dssp CCSEEEEESSCC-----------CSCCHHHHTTCTTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTT--
T ss_pred cccEEECcCCcc-----------cccCHHHhcCccccCeeECCCCcCCc-cChhhccccccCCEEECCCCccceECHH--
Confidence 455555555421 11111234567789999999999654 4444457899999999999874332221
Q ss_pred CCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcc
Q 047894 971 LPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLES 1023 (1087)
Q Consensus 971 l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 1023 (1087)
.+.+|++|+.|++++|++++..+..+..+++|++|++++|++...
T Consensus 291 --------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 291 --------AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp --------TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred --------HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 356789999999999999998777788999999999999998754
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=5.7e-21 Score=214.15 Aligned_cols=122 Identities=19% Similarity=0.299 Sum_probs=96.1
Q ss_pred cccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccc
Q 047894 542 FYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTC 621 (1087)
Q Consensus 542 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~ 621 (1087)
+..+++++.|.+.+.... . .+ .+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+.
T Consensus 40 ~~~l~~L~~L~l~~~~i~--------~-~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~ 107 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA--------S-IQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQ 107 (347)
T ss_dssp HHHHTTCSEEECCSSCCC--------C-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred chhcccccEEEEeCCccc--------c-ch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHc
Confidence 346677888877654321 1 12 26778999999999999998876 999999999999999999886 599
Q ss_pred cCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCCccccccCccCCCCCCCCccC
Q 047894 622 KLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKLLKEMPCGMKELKKLRTLS 678 (1087)
Q Consensus 622 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 678 (1087)
++++|++|++++|. +..+|. +..+++|++|++++|.....++ .+..+++|+.|.
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~ 161 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT 161 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEE
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEE
Confidence 99999999999976 677776 9999999999999997444333 366666666654
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=2e-20 Score=213.17 Aligned_cols=124 Identities=20% Similarity=0.290 Sum_probs=97.2
Q ss_pred cCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccC-ccccCCccceeeccCCCcCcccc-cccc
Q 047894 544 EIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELP-IPFEELRLLRFLNLADIDIKSLP-ESTC 621 (1087)
Q Consensus 544 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~ 621 (1087)
.+.+++.+.+.+... ..++...+..+++|++|++++|.+..++ ..|+.+.+|++|++++|.++.+| ..++
T Consensus 43 ~l~~l~~l~l~~~~l--------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM--------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCEE--------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecCCch--------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 457788887654432 2334455788999999999999998885 48999999999999999999885 5689
Q ss_pred cCCCCcEEEecCCCCCcccCcc-cCCCCCcCEEeecCCccccccCc-cCCCCCCCCcc
Q 047894 622 KLLNLEILILRNCSRLIKLPPK-MRNLINLNHLDIRGAKLLKEMPC-GMKELKKLRTL 677 (1087)
Q Consensus 622 ~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L 677 (1087)
++++|++|++++|. +..+|.. +.++++|++|++++|. +..++. .++++++|++|
T Consensus 115 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 115 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNL 170 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEE
T ss_pred CCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEE
Confidence 99999999999986 7788877 5899999999999998 444433 35555555555
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.4e-20 Score=224.41 Aligned_cols=307 Identities=16% Similarity=0.154 Sum_probs=218.7
Q ss_pred cCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccC-ccccCCccceeeccCCCcCccccc-ccc
Q 047894 544 EIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELP-IPFEELRLLRFLNLADIDIKSLPE-STC 621 (1087)
Q Consensus 544 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~ 621 (1087)
.+.+++.+.+.+... ..+++.+|..+++|++|+|++|.+..+| ..|+.+.+|++|+|++|.++.+|. .++
T Consensus 49 ~l~~l~~l~l~~~~l--------~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM--------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCEE--------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCCC--------CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 356777776544321 2344556788999999999999998875 489999999999999999998865 579
Q ss_pred cCCCCcEEEecCCCCCcccCcc-cCCCCCcCEEeecCCccccccC-ccCCCCCCCCccCeeeeCccCCCCCccccccccc
Q 047894 622 KLLNLEILILRNCSRLIKLPPK-MRNLINLNHLDIRGAKLLKEMP-CGMKELKKLRTLSNFIVGKRETASGLEDLKCLNF 699 (1087)
Q Consensus 622 ~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~ 699 (1087)
++++|++|+|++|. +..+|.. ++++++|++|++++|. +..++ ..++++++|++|+...+..
T Consensus 121 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--------------- 183 (597)
T 3oja_B 121 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL--------------- 183 (597)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCC---------------
T ss_pred CCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCC---------------
Confidence 99999999999986 6778776 5899999999999998 44444 3466777666664321100
Q ss_pred cccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCc
Q 047894 700 LCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWI 779 (1087)
Q Consensus 700 L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~ 779 (1087)
..++ +
T Consensus 184 -------------------------------------------------------------------------~~~~--~ 188 (597)
T 3oja_B 184 -------------------------------------------------------------------------THVD--L 188 (597)
T ss_dssp -------------------------------------------------------------------------SBCC--G
T ss_pred -------------------------------------------------------------------------CCcC--h
Confidence 0000 0
Q ss_pred CCcccCcccEEeeeCCCCCCCCCCCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccc
Q 047894 780 GDPLFCKIELLELENCDNCVSLPSLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIK 859 (1087)
Q Consensus 780 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~ 859 (1087)
..+++|+.|++++|.... +...++|+.|+++++.. .. +.
T Consensus 189 --~~l~~L~~L~l~~n~l~~----l~~~~~L~~L~ls~n~l-~~----------------------------------~~ 227 (597)
T 3oja_B 189 --SLIPSLFHANVSYNLLST----LAIPIAVEELDASHNSI-NV----------------------------------VR 227 (597)
T ss_dssp --GGCTTCSEEECCSSCCSE----EECCTTCSEEECCSSCC-CE----------------------------------EE
T ss_pred --hhhhhhhhhhcccCcccc----ccCCchhheeeccCCcc-cc----------------------------------cc
Confidence 125667777777765432 23345677777776521 11 00
Q ss_pred cccccccCCcccEEEEecCCCcccc-CCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCC
Q 047894 860 GNVHVEIFPRLHKLSIVECPKLSGE-LPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTAL 938 (1087)
Q Consensus 860 ~~~~~~~~~~L~~L~l~~c~~l~~~-~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~ 938 (1087)
...+++|+.|++.+| .+++. ....+++|+.|++++|. +..+....+..+++|++|++++|.+.
T Consensus 228 ----~~~~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-----------l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 228 ----GPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-----------LEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp ----CSCCSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-----------CCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred ----cccCCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-----------cCCCCHHHhcCccCCCEEECCCCCCC
Confidence 122467888888888 56532 11458899999999873 44455566778899999999999865
Q ss_pred CCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEecc
Q 047894 939 KSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENC 1018 (1087)
Q Consensus 939 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 1018 (1087)
. +|..+ ..+++|+.|++++|.. ..+|. .+..+++|+.|++++|.+++.. +..+++|++|++++|
T Consensus 292 ~-l~~~~-~~l~~L~~L~Ls~N~l-~~i~~----------~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 292 A-LNLYG-QPIPTLKVLDLSHNHL-LHVER----------NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHN 355 (597)
T ss_dssp E-EECSS-SCCTTCCEEECCSSCC-CCCGG----------GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSS
T ss_pred C-CCccc-ccCCCCcEEECCCCCC-CccCc----------ccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCC
Confidence 4 55543 5799999999999873 33332 3566789999999999988753 567889999999999
Q ss_pred CCCcc
Q 047894 1019 RKLES 1023 (1087)
Q Consensus 1019 ~~~~~ 1023 (1087)
++.+.
T Consensus 356 ~~~~~ 360 (597)
T 3oja_B 356 DWDCN 360 (597)
T ss_dssp CEEHH
T ss_pred CCCCh
Confidence 98754
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.5e-19 Score=200.73 Aligned_cols=87 Identities=24% Similarity=0.305 Sum_probs=72.7
Q ss_pred CcccEEEecCCCCcccCccccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeec
Q 047894 578 KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIR 656 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 656 (1087)
.++++++++++.+..+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|......|..+.++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 478999999999999988775 589999999999998875 79999999999999987444448889999999999999
Q ss_pred CCccccccCcc
Q 047894 657 GAKLLKEMPCG 667 (1087)
Q Consensus 657 ~~~~~~~~p~~ 667 (1087)
+|. +..+|..
T Consensus 109 ~n~-l~~l~~~ 118 (330)
T 1xku_A 109 KNQ-LKELPEK 118 (330)
T ss_dssp SSC-CSBCCSS
T ss_pred CCc-CCccChh
Confidence 987 5556543
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.1e-19 Score=201.81 Aligned_cols=286 Identities=15% Similarity=0.131 Sum_probs=174.0
Q ss_pred CcccEEEecCCCCcccCccccCCccceeeccCCCcCcccc-cccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeec
Q 047894 578 KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLP-ESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIR 656 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 656 (1087)
.++++++++++.++.+|..+. .+|++|++++|.++.+| ..+.++++|++|++++|......|..+.++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 368999999999999998775 58999999999999875 579999999999999987444447789999999999999
Q ss_pred CCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEe
Q 047894 657 GAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDW 736 (1087)
Q Consensus 657 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 736 (1087)
+|. +..+|..+. ++|++| +++.
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L-------------------------------------------------------~l~~ 132 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVEL-------------------------------------------------------RIHD 132 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEE-------------------------------------------------------ECCS
T ss_pred CCc-CCccCcccc--ccCCEE-------------------------------------------------------ECCC
Confidence 887 555654332 222222 2221
Q ss_pred eCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCC-CcCCcccCcccEEeeeCCCCCC--CCC-CCCCcCCcce
Q 047894 737 VSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-WIGDPLFCKIELLELENCDNCV--SLP-SLGRLSSLKH 812 (1087)
Q Consensus 737 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~--~l~-~l~~l~~L~~ 812 (1087)
+ ....+|. .+.. +++|+.|++++|.... ..+ .++.+ +|++
T Consensus 133 n---------------------------------~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 133 N---------------------------------RIRKVPKGVFSG--LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp S---------------------------------CCCCCCSGGGSS--CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred C---------------------------------ccCccCHhHhCC--CccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 1 1111121 1222 6677777777776532 222 34444 6666
Q ss_pred eeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCCCCc
Q 047894 813 LAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSL 892 (1087)
Q Consensus 813 L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L 892 (1087)
|+++++.. .. + |...+++|+.|++++| .+++..+
T Consensus 177 L~l~~n~l-~~-------------l-------------------------~~~~~~~L~~L~l~~n-~i~~~~~------ 210 (332)
T 2ft3_A 177 LRISEAKL-TG-------------I-------------------------PKDLPETLNELHLDHN-KIQAIEL------ 210 (332)
T ss_dssp CBCCSSBC-SS-------------C-------------------------CSSSCSSCSCCBCCSS-CCCCCCT------
T ss_pred EECcCCCC-Cc-------------c-------------------------CccccCCCCEEECCCC-cCCccCH------
Confidence 66655310 00 0 1112345666666555 3432111
Q ss_pred cEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCC
Q 047894 893 ETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLP 972 (1087)
Q Consensus 893 ~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~ 972 (1087)
..+..+++|++|++++|.+....+.. +..+++|+.|++++|. ++.+|
T Consensus 211 --------------------------~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~lp----- 257 (332)
T 2ft3_A 211 --------------------------EDLLRYSKLYRLGLGHNQIRMIENGS-LSFLPTLRELHLDNNK-LSRVP----- 257 (332)
T ss_dssp --------------------------TSSTTCTTCSCCBCCSSCCCCCCTTG-GGGCTTCCEEECCSSC-CCBCC-----
T ss_pred --------------------------HHhcCCCCCCEEECCCCcCCcCChhH-hhCCCCCCEEECCCCc-CeecC-----
Confidence 12334556677777777755443333 3567777777777765 33232
Q ss_pred CCCCEEEEecccCccccccccCCCCCCCCCCCCC------CCCccEEEEeccCCC--cccCCCCCCCCCccEEEEecCC
Q 047894 973 ASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSS------PVMLQLLRIENCRKL--ESIPDGLPNLKCLQSICIRKCP 1043 (1087)
Q Consensus 973 ~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~------l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~l~~c~ 1043 (1087)
. .+..+++|+.|++++|.+++..+..+.. .++|+.|++++|+.. ...|..+..+++|+.|++++|.
T Consensus 258 ~-----~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 A-----GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp T-----TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred h-----hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 2 2345666777777777666655554433 366788888888775 3445667777888888777754
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=4.2e-20 Score=202.76 Aligned_cols=95 Identities=22% Similarity=0.357 Sum_probs=73.3
Q ss_pred CcccEEEecCCCCc---ccCccccCCccceeeccCC-CcCc-ccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCE
Q 047894 578 KRLRMLSLQGYCIG---ELPIPFEELRLLRFLNLAD-IDIK-SLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNH 652 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 652 (1087)
.+++.|+|+++.+. .+|..|+++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57888999998886 5788888999999999984 7766 77888888999999999887755578888888888888
Q ss_pred EeecCCccccccCccCCCCC
Q 047894 653 LDIRGAKLLKEMPCGMKELK 672 (1087)
Q Consensus 653 L~l~~~~~~~~~p~~i~~L~ 672 (1087)
|++++|.....+|..+++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp EECCSSEEESCCCGGGGGCT
T ss_pred EeCCCCccCCcCChHHhcCC
Confidence 88888873224444343333
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=4.2e-18 Score=187.91 Aligned_cols=93 Identities=24% Similarity=0.325 Sum_probs=84.9
Q ss_pred CCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEee
Q 047894 576 KFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDI 655 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 655 (1087)
....+++|+|++|.+..+|..++++.+|++|+|++|.++.+|..++++++|++|+|++|. +..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 457899999999999999999999999999999999999999999999999999999987 6699999999999999999
Q ss_pred cCCccccccCccCC
Q 047894 656 RGAKLLKEMPCGMK 669 (1087)
Q Consensus 656 ~~~~~~~~~p~~i~ 669 (1087)
++|.....+|..++
T Consensus 158 ~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 158 RACPELTELPEPLA 171 (328)
T ss_dssp EEETTCCCCCSCSE
T ss_pred CCCCCccccChhHh
Confidence 99886777776554
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=1e-17 Score=185.89 Aligned_cols=280 Identities=18% Similarity=0.227 Sum_probs=207.7
Q ss_pred CcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeeccccccCCcccCCCC
Q 047894 761 CIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 839 (1087)
Q Consensus 761 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~ 839 (1087)
+++.+.+++.....+|..+ .++|+.|++++|.+....+ .++.+++|++|+++++. +..+..... ..+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF-----SPLRK 103 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS-----TTCTT
T ss_pred cCCEEECCCCCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh-----hCcCC
Confidence 4677777777777777655 4689999999998765444 68899999999999874 444432222 23888
Q ss_pred ccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCC----CCCCCccEEEEeecCCccccCCCCCcccE
Q 047894 840 LEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP----ELLPSLETLVVSKCGKLVVPLSCYPMLCR 915 (1087)
Q Consensus 840 L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~~~~~~~~~~~L~~ 915 (1087)
|+.|++++.. +. ..|...+++|++|++.+| .++ .+| ..+++|++|++++|.......
T Consensus 104 L~~L~L~~n~--------l~-~l~~~~~~~L~~L~l~~n-~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------- 164 (332)
T 2ft3_A 104 LQKLYISKNH--------LV-EIPPNLPSSLVELRIHDN-RIR-KVPKGVFSGLRNMNCIEMGGNPLENSGF-------- 164 (332)
T ss_dssp CCEEECCSSC--------CC-SCCSSCCTTCCEEECCSS-CCC-CCCSGGGSSCSSCCEEECCSCCCBGGGS--------
T ss_pred CCEEECCCCc--------CC-ccCccccccCCEEECCCC-ccC-ccCHhHhCCCccCCEEECCCCccccCCC--------
Confidence 9999887742 22 223344689999999988 666 343 357889999998875321100
Q ss_pred EEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCC
Q 047894 916 LEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGD 995 (1087)
Q Consensus 916 l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~ 995 (1087)
....+..+ +|++|++++|.+. .+|..+ .++|+.|++++|..-. ++. . .+.++++|+.|++++|.
T Consensus 165 -~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~-~~~----~-----~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 165 -EPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQA-IEL----E-----DLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp -CTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCC-CCT----T-----SSTTCTTCSCCBCCSSC
T ss_pred -CcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCc-cCH----H-----HhcCCCCCCEEECCCCc
Confidence 11233444 8899999999865 466543 4789999999986332 221 1 35577899999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCC--------CCCcCeEEEccCCC
Q 047894 996 ASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGL--------PNTISAVYICECDK 1067 (1087)
Q Consensus 996 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--------~~sL~~L~i~~c~~ 1067 (1087)
+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++ +.++.+|...+ .++|+.|++.+|+.
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcc
Confidence 99988888899999999999999886 7888899999999999999 56888876433 35799999999986
Q ss_pred C--CCCCCCCCCCCCCCcEEeC
Q 047894 1068 L--EAPPNDMHKLNSLQSLSIK 1087 (1087)
Q Consensus 1068 l--~~~p~~l~~l~~L~~l~i~ 1087 (1087)
. ...|..+..+++|+.++++
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC-
T ss_pred cccccCcccccccchhhhhhcc
Confidence 5 4667789999999999874
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=1e-17 Score=185.90 Aligned_cols=281 Identities=15% Similarity=0.196 Sum_probs=198.5
Q ss_pred CcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceee-ccccccCCcccCCC
Q 047894 761 CIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSI-ESEVYGEGFSMPFP 838 (1087)
Q Consensus 761 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~~~~fp 838 (1087)
+++.+.+++.....+|..+ .++++.|++++|.+....+ .++.+++|++|+++++. +..+ +..+ ..++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~------~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF------APLV 100 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT------TTCT
T ss_pred CCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHh------cCCC
Confidence 3555556665556666544 3578888888887655444 57788888888888764 3332 2222 2367
Q ss_pred CccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCC---CCCCCccEEEEeecCCccccCCCCCcccE
Q 047894 839 SLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP---ELLPSLETLVVSKCGKLVVPLSCYPMLCR 915 (1087)
Q Consensus 839 ~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~~~~~~~~~~~L~~ 915 (1087)
+|+.|++++.. +. ..+...+++|++|++.+| .+++..+ ..+++|++|++++|......
T Consensus 101 ~L~~L~Ls~n~--------l~-~l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------- 161 (330)
T 1xku_A 101 KLERLYLSKNQ--------LK-ELPEKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSG--------- 161 (330)
T ss_dssp TCCEEECCSSC--------CS-BCCSSCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGG---------
T ss_pred CCCEEECCCCc--------CC-ccChhhcccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccC---------
Confidence 78888776642 21 122344678999999888 5653322 46788899998887432110
Q ss_pred EEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCC
Q 047894 916 LEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGD 995 (1087)
Q Consensus 916 l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~ 995 (1087)
.....+.++++|++|++++|.+. .+|..+ .++|+.|++++|..-...+. .+.++++|+.|++++|.
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAA----------SLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTG----------GGTTCTTCCEEECCSSC
T ss_pred cChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHH----------HhcCCCCCCEEECCCCc
Confidence 11134566788999999999864 456543 48899999999873222111 24567889999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCC--------CCCcCeEEEccCCC
Q 047894 996 ASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGL--------PNTISAVYICECDK 1067 (1087)
Q Consensus 996 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--------~~sL~~L~i~~c~~ 1067 (1087)
+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++ +.++.+|...+ .++|+.|++++|+.
T Consensus 228 l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcc
Confidence 99887778889999999999999876 7888899999999999999 46888887544 25799999999986
Q ss_pred CC--CCCCCCCCCCCCCcEEeC
Q 047894 1068 LE--APPNDMHKLNSLQSLSIK 1087 (1087)
Q Consensus 1068 l~--~~p~~l~~l~~L~~l~i~ 1087 (1087)
.. ..|..+..+..|+.++++
T Consensus 306 ~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp CGGGSCGGGGTTCCCGGGEEC-
T ss_pred cccccCccccccccceeEEEec
Confidence 43 556778899999999874
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=5.2e-17 Score=192.74 Aligned_cols=264 Identities=20% Similarity=0.167 Sum_probs=165.2
Q ss_pred CcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecC
Q 047894 578 KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRG 657 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 657 (1087)
.++++|+++++.++.+|..+. .+|++|++++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 358999999999999998886 799999999999999988 57899999999986 778887 789999999999
Q ss_pred CccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEee
Q 047894 658 AKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWV 737 (1087)
Q Consensus 658 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 737 (1087)
|. +..+|. .+++|+.| +++.+
T Consensus 111 N~-l~~l~~---~l~~L~~L-------------------------------------------------------~L~~N 131 (622)
T 3g06_A 111 NP-LTHLPA---LPSGLCKL-------------------------------------------------------WIFGN 131 (622)
T ss_dssp CC-CCCCCC---CCTTCCEE-------------------------------------------------------ECCSS
T ss_pred Cc-CCCCCC---CCCCcCEE-------------------------------------------------------ECCCC
Confidence 87 555553 22223222 22211
Q ss_pred CCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCcceeeccC
Q 047894 738 SQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHLAVKG 817 (1087)
Q Consensus 738 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 817 (1087)
....+|.. +++|+.|++++|.+.. +|. .+++|+.|++++
T Consensus 132 ---------------------------------~l~~lp~~-----l~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~L~~ 170 (622)
T 3g06_A 132 ---------------------------------QLTSLPVL-----PPGLQELSVSDNQLAS-LPA--LPSELCKLWAYN 170 (622)
T ss_dssp ---------------------------------CCSCCCCC-----CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCS
T ss_pred ---------------------------------CCCcCCCC-----CCCCCEEECcCCcCCC-cCC--ccCCCCEEECCC
Confidence 11122221 3567777777776532 332 235566666655
Q ss_pred CCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCCCCccEEEE
Q 047894 818 LKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSLETLVV 897 (1087)
Q Consensus 818 ~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l 897 (1087)
+. +.. ++ ..+++|+.|++++| .++ .+|..+++|+.|++
T Consensus 171 N~--------------------------------------l~~-l~-~~~~~L~~L~Ls~N-~l~-~l~~~~~~L~~L~L 208 (622)
T 3g06_A 171 NQ--------------------------------------LTS-LP-MLPSGLQELSVSDN-QLA-SLPTLPSELYKLWA 208 (622)
T ss_dssp SC--------------------------------------CSC-CC-CCCTTCCEEECCSS-CCS-CCCCCCTTCCEEEC
T ss_pred CC--------------------------------------CCC-Cc-ccCCCCcEEECCCC-CCC-CCCCccchhhEEEC
Confidence 31 110 00 23567888888887 666 56666777888877
Q ss_pred eecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCE
Q 047894 898 SKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKR 977 (1087)
Q Consensus 898 ~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~ 977 (1087)
++|..... + ..+++|++|++++|.+. .+| ..+++|+.|++++|. ++.+|.
T Consensus 209 ~~N~l~~l-----~----------~~~~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~-L~~lp~--------- 258 (622)
T 3g06_A 209 YNNRLTSL-----P----------ALPSGLKELIVSGNRLT-SLP----VLPSELKELMVSGNR-LTSLPM--------- 258 (622)
T ss_dssp CSSCCSSC-----C----------CCCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSC-CSCCCC---------
T ss_pred cCCccccc-----C----------CCCCCCCEEEccCCccC-cCC----CCCCcCcEEECCCCC-CCcCCc---------
Confidence 77632111 1 11356777777777644 344 245677777777764 333321
Q ss_pred EEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCC
Q 047894 978 LEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDG 1027 (1087)
Q Consensus 978 L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 1027 (1087)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+..|..
T Consensus 259 ----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 259 ----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp ----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred ----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 2345555555556555 33555566666666666666666555443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=189.09 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=68.2
Q ss_pred CCcccEEEecCCCCcccCccccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCCCCCccc-CcccCCCCCcCEEe
Q 047894 577 FKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNCSRLIKL-PPKMRNLINLNHLD 654 (1087)
Q Consensus 577 ~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 654 (1087)
+....+.+++++.++.+|..+.. +|++|++++|.++.+|. .+.++++|++|++++|. +..+ |..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcccccccccc--cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEE
Confidence 34445688888999999987764 89999999999998876 78999999999999886 4444 56688899999999
Q ss_pred ecCCccccccCc
Q 047894 655 IRGAKLLKEMPC 666 (1087)
Q Consensus 655 l~~~~~~~~~p~ 666 (1087)
+++|. +..+|.
T Consensus 107 Ls~n~-l~~~~~ 117 (353)
T 2z80_A 107 LSYNY-LSNLSS 117 (353)
T ss_dssp CCSSC-CSSCCH
T ss_pred CCCCc-CCcCCH
Confidence 98887 444443
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=4.9e-20 Score=223.07 Aligned_cols=203 Identities=12% Similarity=0.070 Sum_probs=97.8
Q ss_pred cCCCCcccEEEecCCCCcc-cCccccCC--ccceeeccCCCc-Cc--ccccccccCCCCcEEEecCCCCCcc----cCcc
Q 047894 574 LPKFKRLRMLSLQGYCIGE-LPIPFEEL--RLLRFLNLADID-IK--SLPESTCKLLNLEILILRNCSRLIK----LPPK 643 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~-lp~~i~~l--~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~ 643 (1087)
+..+++|++|+|++|.++. .+..++.+ .+|++|++++|. +. .++..+.++++|++|+|++|..... ++..
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred HhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 3466777777777776532 23334442 337777777665 22 2334445667777777777652211 2233
Q ss_pred cCCCCCcCEEeecCCccc----cccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHH
Q 047894 644 MRNLINLNHLDIRGAKLL----KEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAR 719 (1087)
Q Consensus 644 i~~L~~L~~L~l~~~~~~----~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~ 719 (1087)
...+++|++|++++|... ..++..+.++++|+.|....+. ... .
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-------------------------------~~~-l 235 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-------------------------------ILE-L 235 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-------------------------------GGG-G
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-------------------------------HHH-H
Confidence 445667777777766521 1222223344455544321110 001 1
Q ss_pred HHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCC
Q 047894 720 EAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCV 799 (1087)
Q Consensus 720 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 799 (1087)
...+..+.+|+.|.+........ .......+..+++|+.|.+.+.....+|..+.. +++|+.|++++|....
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~--~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIG------MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF--AAQIRKLDLLYALLET 307 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTT------CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGG--GGGCCEEEETTCCCCH
T ss_pred HHHHhhhhHHHhhcccccccccc------hHHHHHHhhccccccccCccccchhHHHHHHhh--cCCCcEEecCCCcCCH
Confidence 23344556777777754221100 011123334445555665555444444544433 5566666666655321
Q ss_pred -CCC-CCCCcCCcceeecc
Q 047894 800 -SLP-SLGRLSSLKHLAVK 816 (1087)
Q Consensus 800 -~l~-~l~~l~~L~~L~L~ 816 (1087)
.++ .++.+++|+.|++.
T Consensus 308 ~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEE
T ss_pred HHHHHHHHhCcCCCEEecc
Confidence 111 23455556665554
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.8e-17 Score=182.79 Aligned_cols=200 Identities=25% Similarity=0.409 Sum_probs=146.3
Q ss_pred ccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCC------
Q 047894 573 LLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRN------ 646 (1087)
Q Consensus 573 ~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~------ 646 (1087)
.+.++++|++|+|++|.+..+|..++++.+|++|+|++|.++.+|..++++++|++|++++|..+..+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 35668999999999999999999999999999999999999999999999999999999999889999988765
Q ss_pred ---CCCcCEEeecCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhc
Q 047894 647 ---LINLNHLDIRGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAAL 723 (1087)
Q Consensus 647 ---L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 723 (1087)
+++|++|++++|. +..+|..++++++|+.|+...+.... . ...+
T Consensus 179 ~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~-------------------------l-------~~~l 225 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSA-------------------------L-------GPAI 225 (328)
T ss_dssp EEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCC-------------------------C-------CGGG
T ss_pred hccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCc-------------------------C-------chhh
Confidence 9999999999998 66888888888888887654322110 0 0013
Q ss_pred cCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-
Q 047894 724 CEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP- 802 (1087)
Q Consensus 724 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~- 802 (1087)
..+.+|+.|+++++.. ...+|.++.. +++|+.|++++|.....+|
T Consensus 226 ~~l~~L~~L~Ls~n~~--------------------------------~~~~p~~~~~--l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTA--------------------------------LRNYPPIFGG--RAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp GGCTTCCEEECTTCTT--------------------------------CCBCCCCTTC--CCCCCEEECTTCTTCCBCCT
T ss_pred ccCCCCCEEECcCCcc--------------------------------hhhhHHHhcC--CCCCCEEECCCCCchhhcch
Confidence 3344555555543321 1234555544 6777777777777766666
Q ss_pred CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeec
Q 047894 803 SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSF 845 (1087)
Q Consensus 803 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l 845 (1087)
.++.+++|++|+|++|..+..++..+.. +++|+.+.+
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~------L~~L~~l~l 308 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQ------LPANCIILV 308 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGG------SCTTCEEEC
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhh------ccCceEEeC
Confidence 5677777777777777666655544322 455555444
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=3.9e-19 Score=215.18 Aligned_cols=132 Identities=10% Similarity=-0.080 Sum_probs=63.7
Q ss_pred cCCccEEEeccCC--CCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCC
Q 047894 924 LANLRSLLICNST--ALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSP 1001 (1087)
Q Consensus 924 l~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~ 1001 (1087)
+++|++|++++|. +.......+...+++|+.|++++|. ++.. .++. .+.+|++|+.|++++|.+++...
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~---~~~~-----~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDE---GLME-----FSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHH---HHHH-----HHTCCTTCCEEEEESCCCBHHHH
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHH---HHHH-----HHhcCcccCeeeccCCCCcHHHH
Confidence 5567777776544 2333333333457778888887765 2211 0110 12234445555555554332211
Q ss_pred C-CCCCCCCccEEEEeccCCCcccCCC-CCCCCCccEEEEecCCCCcccCCCC--CCCCcCeEEEcc
Q 047894 1002 S-SSSSPVMLQLLRIENCRKLESIPDG-LPNLKCLQSICIRKCPSLVSFPERG--LPNTISAVYICE 1064 (1087)
Q Consensus 1002 ~-~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~i~~ 1064 (1087)
. .+..+++|++|++++|++...-... ...++.|....+.........|... -......++.++
T Consensus 506 ~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYY 572 (592)
T ss_dssp HHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC---------------CCCEEEEEE
T ss_pred HHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCccccccccccCCcCCcchhheEeee
Confidence 1 2245788999999999865432222 2356777766666532222112211 123566777664
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=3.1e-16 Score=181.96 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=64.9
Q ss_pred cccEEEecCCCCcccCccccCCccceeeccCCCcCccc-ccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecC
Q 047894 579 RLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSL-PESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRG 657 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 657 (1087)
..+.++.++..++.+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|......|..|.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35677888888888887765 5888999999988876 56788889999999988764333446788888888888888
Q ss_pred CccccccCc
Q 047894 658 AKLLKEMPC 666 (1087)
Q Consensus 658 ~~~~~~~p~ 666 (1087)
|. +..+|.
T Consensus 133 n~-l~~~~~ 140 (452)
T 3zyi_A 133 NW-LTVIPS 140 (452)
T ss_dssp SC-CSBCCT
T ss_pred Cc-CCccCh
Confidence 87 544443
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=3.6e-16 Score=180.79 Aligned_cols=237 Identities=20% Similarity=0.211 Sum_probs=125.1
Q ss_pred cEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccE
Q 047894 764 KVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEI 842 (1087)
Q Consensus 764 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~ 842 (1087)
.+...+.....+|..+ .++++.|+|++|.+....+ .|+++++|++|+|+++. +..+..... ..+++|+.
T Consensus 47 ~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~-----~~l~~L~~ 116 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAF-----NGLANLNT 116 (440)
T ss_dssp EEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGG-----TTCSSCCE
T ss_pred EEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhc-----cCCccCCE
Confidence 4444555566677655 4688999999988765443 68889999999998864 333322111 11445555
Q ss_pred eeccccccccccccccccccccccCCcccEEEEecCCCccccCC----CCCCCccEEEEeecCCccccCCCCCcccEEEe
Q 047894 843 LSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP----ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEV 918 (1087)
Q Consensus 843 L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~ 918 (1087)
|++++ | +++ .+| ..+++|++|++++|. +..+..
T Consensus 117 L~L~~------------------------------n-~l~-~~~~~~~~~l~~L~~L~L~~N~-----------i~~~~~ 153 (440)
T 3zyj_A 117 LELFD------------------------------N-RLT-TIPNGAFVYLSKLKELWLRNNP-----------IESIPS 153 (440)
T ss_dssp EECCS------------------------------S-CCS-SCCTTTSCSCSSCCEEECCSCC-----------CCEECT
T ss_pred EECCC------------------------------C-cCC-eeCHhHhhccccCceeeCCCCc-----------ccccCH
Confidence 55544 3 333 111 123444444444432 122222
Q ss_pred ccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCC
Q 047894 919 DECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASS 998 (1087)
Q Consensus 919 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~ 998 (1087)
..+..+++|++|++++|..+..++...+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+++
T Consensus 154 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-----------~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-----------NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-----------CCTTCSSCCEEECTTSCCCE
T ss_pred HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-----------ccCCCcccCEEECCCCccCc
Confidence 2344445555555555554444444434455555555555553 22222 13444555555555555555
Q ss_pred CCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCC--CCCcCeEEEccCC
Q 047894 999 SSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGL--PNTISAVYICECD 1066 (1087)
Q Consensus 999 ~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~ 1066 (1087)
..+..+..+++|++|++++|.+....+..+.++++|++|++++ ++++.+|...+ .++|+.|++++|+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 5555555555666666666555544455555556666666655 34555554322 2455555555544
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=4.5e-16 Score=179.97 Aligned_cols=84 Identities=25% Similarity=0.313 Sum_probs=65.6
Q ss_pred cccEEEecCCCCcccCccccCCccceeeccCCCcCcccc-cccccCCCCcEEEecCCCCCccc-CcccCCCCCcCEEeec
Q 047894 579 RLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLP-ESTCKLLNLEILILRNCSRLIKL-PPKMRNLINLNHLDIR 656 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 656 (1087)
..+.++.++..++.+|..+. .++++|+|++|.|+.++ ..+.++++|++|+|++|. +..+ |..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECC
Confidence 45678888888888888776 58889999999988775 678889999999999876 4444 4668888889999888
Q ss_pred CCccccccCc
Q 047894 657 GAKLLKEMPC 666 (1087)
Q Consensus 657 ~~~~~~~~p~ 666 (1087)
+|. +..+|.
T Consensus 121 ~n~-l~~~~~ 129 (440)
T 3zyj_A 121 DNR-LTTIPN 129 (440)
T ss_dssp SSC-CSSCCT
T ss_pred CCc-CCeeCH
Confidence 886 554543
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=1e-17 Score=183.65 Aligned_cols=250 Identities=18% Similarity=0.181 Sum_probs=144.0
Q ss_pred cccEEeeeCCCCCC--CCC-CCCCcCCcceeeccCCCCce-eeccccccCCcccCCCCccEeeccccccccccccccccc
Q 047894 786 KIELLELENCDNCV--SLP-SLGRLSSLKHLAVKGLKKLK-SIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGN 861 (1087)
Q Consensus 786 ~L~~L~L~~~~~~~--~l~-~l~~l~~L~~L~L~~~~~l~-~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~ 861 (1087)
+++.|++++|.+.+ .+| .++.+++|++|+++++..+. .++..+ ..+++|+.|++++...-......
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l~~~~p~~---- 120 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI------AKLTQLHYLYITHTNVSGAIPDF---- 120 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG------GGCTTCSEEEEEEECCEEECCGG----
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH------hcCCCCCEEECcCCeeCCcCCHH----
Confidence 45555555555543 333 45555555555555322222 222222 11455555555442211011000
Q ss_pred cccccCCcccEEEEecCCCccccCCC---CCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcC-CccEEEeccCCC
Q 047894 862 VHVEIFPRLHKLSIVECPKLSGELPE---LLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELA-NLRSLLICNSTA 937 (1087)
Q Consensus 862 ~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~-~L~~L~l~~~~~ 937 (1087)
...+++|++|++++| .+.+.+|. .+++|++|++++|.- .......+..++ +|++|++++|.+
T Consensus 121 --~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l-----------~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 121 --LSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRI-----------SGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp --GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCC-----------EEECCGGGGCCCTTCCEEECCSSEE
T ss_pred --HhCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcc-----------cCcCCHHHhhhhhcCcEEECcCCee
Confidence 123566666666666 45444442 356666666666531 111112334444 677777777776
Q ss_pred CCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEec
Q 047894 938 LKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIEN 1017 (1087)
Q Consensus 938 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 1017 (1087)
....|..+ ..++ |+.|++++|......+. .+..+++|+.|++++|.+++..+. +..+++|++|++++
T Consensus 187 ~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 187 TGKIPPTF-ANLN-LAFVDLSRNMLEGDASV----------LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRN 253 (313)
T ss_dssp EEECCGGG-GGCC-CSEEECCSSEEEECCGG----------GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCS
T ss_pred eccCChHH-hCCc-ccEEECcCCcccCcCCH----------HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcC
Confidence 65666654 3455 88888887753222221 245567777777777777765544 66778888888888
Q ss_pred cCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCcCeEEEccCCCCCCCC
Q 047894 1018 CRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTISAVYICECDKLEAPP 1072 (1087)
Q Consensus 1018 ~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~~~p 1072 (1087)
|.+.+.+|..+..+++|++|++++|+.-..+|..+..++|+.|++++|+.+...|
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 8887777888888888888888886544477776556678888888887665544
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=3e-16 Score=182.13 Aligned_cols=238 Identities=17% Similarity=0.170 Sum_probs=109.6
Q ss_pred cEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccE
Q 047894 764 KVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEI 842 (1087)
Q Consensus 764 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~ 842 (1087)
.+...+.....+|..+ .++++.|+|++|.+....+ .|+.+++|+.|+|+++. +..+..... ..+++|+.
T Consensus 58 ~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-----~~l~~L~~ 127 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAF-----NGLASLNT 127 (452)
T ss_dssp EEECCSSCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT-----TTCTTCCE
T ss_pred EEEECCCCcCccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhc-----cCcccCCE
Confidence 3444455555666654 4688999999888766444 68888999999888763 333322111 12555555
Q ss_pred eeccccccccccccccccccccccCCcccEEEEecCCCccccCC----CCCCCccEEEEeecCCccccCCCCCcccEEEe
Q 047894 843 LSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP----ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEV 918 (1087)
Q Consensus 843 L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~ 918 (1087)
|++++.. +....... ...+++|++|++++| .++ .+| ..+++|++|++++|.. +..+..
T Consensus 128 L~L~~n~-l~~~~~~~-----~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~l~~~~~----------l~~i~~ 189 (452)
T 3zyi_A 128 LELFDNW-LTVIPSGA-----FEYLSKLRELWLRNN-PIE-SIPSYAFNRVPSLMRLDLGELKK----------LEYISE 189 (452)
T ss_dssp EECCSSC-CSBCCTTT-----SSSCTTCCEEECCSC-CCC-EECTTTTTTCTTCCEEECCCCTT----------CCEECT
T ss_pred EECCCCc-CCccChhh-----hcccCCCCEEECCCC-Ccc-eeCHhHHhcCCcccEEeCCCCCC----------ccccCh
Confidence 5555432 11110000 112445555555555 333 121 1344444444444321 222222
Q ss_pred ccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCC
Q 047894 919 DECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASS 998 (1087)
Q Consensus 919 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~ 998 (1087)
..+.++++|++|++++|.+.. +|. +..+++|+.|++++|......+. .+.++++|+.|++++|.+++
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKD-MPN--LTPLVGLEELEMSGNHFPEIRPG----------SFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSS-CCC--CTTCTTCCEEECTTSCCSEECGG----------GGTTCTTCCEEECTTSCCCE
T ss_pred hhccCCCCCCEEECCCCcccc-ccc--ccccccccEEECcCCcCcccCcc----------cccCccCCCEEEeCCCcCce
Confidence 233444444445554444322 221 13344444444444432111111 12233444444444444444
Q ss_pred CCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecC
Q 047894 999 SSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKC 1042 (1087)
Q Consensus 999 ~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c 1042 (1087)
..+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 44444444444444444444444333333444444444444443
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=4.9e-20 Score=215.55 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCCccEEEEeccCCCc----ccCCCCCCCCCccEEEEecCCCCcc---------cCCCCCCCCcCeEEEccCCC
Q 047894 1007 PVMLQLLRIENCRKLE----SIPDGLPNLKCLQSICIRKCPSLVS---------FPERGLPNTISAVYICECDK 1067 (1087)
Q Consensus 1007 l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~c~~l~~---------lp~~~~~~sL~~L~i~~c~~ 1067 (1087)
.++|++|++++|.+.. .+|..+..+++|++|++++|+ ++. +|. ...+|+.|.+.++..
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~--~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQ--PGCLLEQLVLYDIYW 439 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTS--TTCCCCEEECTTCCC
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhcc--CCcchhheeeccccc
Confidence 4567777777777664 556666677778888887753 432 222 123677777766543
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=3e-15 Score=177.66 Aligned_cols=251 Identities=25% Similarity=0.311 Sum_probs=135.9
Q ss_pred cccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCcceeeccCCCCceeeccccccCCcccCCCCcc
Q 047894 762 IKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLE 841 (1087)
Q Consensus 762 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~ 841 (1087)
++.|.++++....+|..+ .++|+.|++++|.+. .+|. .+++|++|+|+++. ++.++. .+++|+
T Consensus 42 l~~L~ls~n~L~~lp~~l----~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~L~ 104 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCL----PAHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQ-LTSLPV---------LPPGLL 104 (622)
T ss_dssp CCEEECCSSCCSCCCSCC----CTTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCC-CSCCCC---------CCTTCC
T ss_pred CcEEEecCCCcCccChhh----CCCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCc-CCcCCC---------CCCCCC
Confidence 455555555555555543 245666666666543 3443 45666666666543 222221 255566
Q ss_pred EeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccC
Q 047894 842 ILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDEC 921 (1087)
Q Consensus 842 ~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~ 921 (1087)
.|++++.. +.+. +. .+++|+.|++.+| +++ .+|..+++|++|++++|.-... +
T Consensus 105 ~L~Ls~N~--------l~~l-~~-~l~~L~~L~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~~l-----~---------- 157 (622)
T 3g06_A 105 ELSIFSNP--------LTHL-PA-LPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLASL-----P---------- 157 (622)
T ss_dssp EEEECSCC--------CCCC-CC-CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSCC-----C----------
T ss_pred EEECcCCc--------CCCC-CC-CCCCcCEEECCCC-CCC-cCCCCCCCCCEEECcCCcCCCc-----C----------
Confidence 66555431 2111 11 3566777777766 565 5666667777777776631110 0
Q ss_pred CCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCC
Q 047894 922 KELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSP 1001 (1087)
Q Consensus 922 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~ 1001 (1087)
..+.+|+.|++++|.+.. +| ..+++|+.|++++|. ++.++. .+ ++|+.|++++|.++.. |
T Consensus 158 ~~~~~L~~L~L~~N~l~~-l~----~~~~~L~~L~Ls~N~-l~~l~~--~~-----------~~L~~L~L~~N~l~~l-~ 217 (622)
T 3g06_A 158 ALPSELCKLWAYNNQLTS-LP----MLPSGLQELSVSDNQ-LASLPT--LP-----------SELYKLWAYNNRLTSL-P 217 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSC-CSCCCC--CC-----------TTCCEEECCSSCCSSC-C
T ss_pred CccCCCCEEECCCCCCCC-Cc----ccCCCCcEEECCCCC-CCCCCC--cc-----------chhhEEECcCCccccc-C
Confidence 123456666777666433 44 245667777777665 332221 11 3444444555554432 2
Q ss_pred CCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCcCeEEEccCCCCCCCCCCCCCCCCC
Q 047894 1002 SSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTISAVYICECDKLEAPPNDMHKLNSL 1081 (1087)
Q Consensus 1002 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~~~p~~l~~l~~L 1081 (1087)
. .+++|++|++++|.+. .+| ..+++|++|++++| .++.+|. .+++|+.|++++|. ++.+|..+.++++|
T Consensus 218 ~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L 286 (622)
T 3g06_A 218 A---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-LTRLPESLIHLSSE 286 (622)
T ss_dssp C---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CCSCCGGGGGSCTT
T ss_pred C---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-CCcCCHHHhhcccc
Confidence 2 2356777777776554 344 34566777777763 5666665 45667777776664 44566666667777
Q ss_pred CcEEeC
Q 047894 1082 QSLSIK 1087 (1087)
Q Consensus 1082 ~~l~i~ 1087 (1087)
+.|+++
T Consensus 287 ~~L~L~ 292 (622)
T 3g06_A 287 TTVNLE 292 (622)
T ss_dssp CEEECC
T ss_pred CEEEec
Confidence 766653
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1.9e-16 Score=173.52 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=62.9
Q ss_pred cEEEecCCCCcccCccccCCccceeeccCCCcCcccccc-cccCCCCcEEEecCCCCCccc---CcccCCCCCcCEEeec
Q 047894 581 RMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPES-TCKLLNLEILILRNCSRLIKL---PPKMRNLINLNHLDIR 656 (1087)
Q Consensus 581 r~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~l~ 656 (1087)
+.++++++.++.+|..+. .+|++|++++|.++.+|.. +.++++|++|++++|. +..+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECC
Confidence 467777777888877654 5788888888888877764 5788888888888765 3333 5556677888888887
Q ss_pred CCccccccCccCCCCCCCCcc
Q 047894 657 GAKLLKEMPCGMKELKKLRTL 677 (1087)
Q Consensus 657 ~~~~~~~~p~~i~~L~~L~~L 677 (1087)
+|. +..+|..+..+++|++|
T Consensus 87 ~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 87 FNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp SCS-EEEEEEEEETCTTCCEE
T ss_pred CCc-cccChhhcCCCCCCCEE
Confidence 776 44455444444444333
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.1e-18 Score=211.39 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=63.4
Q ss_pred cCCccEEEec-----cCCCCCCCch-----hhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEe-cccCccccccc
Q 047894 924 LANLRSLLIC-----NSTALKSLPE-----EMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIE-NCEKLQRLFDD 992 (1087)
Q Consensus 924 l~~L~~L~l~-----~~~~~~~~~~-----~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~-~c~~L~~l~l~ 992 (1087)
+++|+.|+++ +|..++..|. .++..+++|+.|++++ .+....... +. .+++|+.|+++
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~---------l~~~~~~L~~L~L~ 464 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEY---------IGTYAKKMEMLSVA 464 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHH---------HHHHCTTCCEEEEE
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHH---------HHHhchhccEeecc
Confidence 4577777787 3343443221 1235688899999976 333211100 11 14455555555
Q ss_pred cCCCCCCCCCCC-CCCCCccEEEEeccCCCcccC-CCCCCCCCccEEEEecCCC
Q 047894 993 EGDASSSSPSSS-SSPVMLQLLRIENCRKLESIP-DGLPNLKCLQSICIRKCPS 1044 (1087)
Q Consensus 993 ~n~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~c~~ 1044 (1087)
+|.+++..+..+ ..+++|++|+|++|++....+ ..+..+++|++|++++|+.
T Consensus 465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 555443333222 457889999999988753332 2445678899999998875
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=5e-19 Score=206.95 Aligned_cols=88 Identities=20% Similarity=0.313 Sum_probs=58.5
Q ss_pred cccCCCCcccEEEecCCCCc-----ccCccccCCccceeeccCCCcCccc-cccc-ccCC----CCcEEEecCCCCC---
Q 047894 572 DLLPKFKRLRMLSLQGYCIG-----ELPIPFEELRLLRFLNLADIDIKSL-PEST-CKLL----NLEILILRNCSRL--- 637 (1087)
Q Consensus 572 ~~~~~~~~Lr~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i-~~L~----~L~~L~L~~~~~l--- 637 (1087)
..+..+++|++|++++|.++ .++..+..+++|++|++++|.+... +..+ ..+. +|++|++++|...
T Consensus 22 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 22 ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 34566677778888877765 4466677777788888887777632 2222 2344 5788888877632
Q ss_pred -cccCcccCCCCCcCEEeecCCc
Q 047894 638 -IKLPPKMRNLINLNHLDIRGAK 659 (1087)
Q Consensus 638 -~~lp~~i~~L~~L~~L~l~~~~ 659 (1087)
..+|..+.++++|++|++++|.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCc
Confidence 1456677777788888887776
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=167.13 Aligned_cols=259 Identities=14% Similarity=0.149 Sum_probs=133.3
Q ss_pred eccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeecc
Q 047894 768 RNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFE 846 (1087)
Q Consensus 768 ~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~ 846 (1087)
++.....+|..+ .++|+.|++++|.+....+ .++++++|++|+++++. +..+..... ..+++|+.|+++
T Consensus 39 ~~~~l~~iP~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l~~L~~L~Ls 108 (353)
T 2z80_A 39 SSGSLNSIPSGL----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSF-----SSLGSLEHLDLS 108 (353)
T ss_dssp CSTTCSSCCTTC----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT-----TTCTTCCEEECC
T ss_pred CCCCcccccccc----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhc-----CCCCCCCEEECC
Confidence 344444555433 3466666666666544333 46666666666666652 333322111 125666666665
Q ss_pred ccccccccccccccccc--cccCCcccEEEEecCCCccccCC-----CCCCCccEEEEeecCCccccCCCCCcccEEEec
Q 047894 847 NLAEWEHWDTDIKGNVH--VEIFPRLHKLSIVECPKLSGELP-----ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVD 919 (1087)
Q Consensus 847 ~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~p-----~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~ 919 (1087)
+.. +.+..+ ...+++|++|++++| .++ .+| ..+++|++|++++|..+ ..+...
T Consensus 109 ~n~--------l~~~~~~~~~~l~~L~~L~L~~n-~l~-~l~~~~~~~~l~~L~~L~l~~n~~~----------~~~~~~ 168 (353)
T 2z80_A 109 YNY--------LSNLSSSWFKPLSSLTFLNLLGN-PYK-TLGETSLFSHLTKLQILRVGNMDTF----------TKIQRK 168 (353)
T ss_dssp SSC--------CSSCCHHHHTTCTTCSEEECTTC-CCS-SSCSSCSCTTCTTCCEEEEEESSSC----------CEECTT
T ss_pred CCc--------CCcCCHhHhCCCccCCEEECCCC-CCc-ccCchhhhccCCCCcEEECCCCccc----------cccCHH
Confidence 532 111100 123566777777666 444 232 24566777777766322 222223
Q ss_pred cCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCC
Q 047894 920 ECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSS 999 (1087)
Q Consensus 920 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~ 999 (1087)
.+.++++|++|++++|.+....|..+ ..+++|+.|++++|.. ..++.. .+..+++|+.|++++|.+++.
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l-~~~~~~---------~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLILHMKQH-ILLLEI---------FVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSCS-TTHHHH---------HHHHTTTEEEEEEESCBCTTC
T ss_pred HccCCCCCCEEECCCCCcCccCHHHH-hccccCCeecCCCCcc-ccchhh---------hhhhcccccEEECCCCccccc
Confidence 44555666666666666554444443 4566666666666652 222211 122244555555555555554
Q ss_pred CCCCC---CCCCCccEEEEeccCCCc----ccCCCCCCCCCccEEEEecCCCCcccCCCC--CCCCcCeEEEccCCCC
Q 047894 1000 SPSSS---SSPVMLQLLRIENCRKLE----SIPDGLPNLKCLQSICIRKCPSLVSFPERG--LPNTISAVYICECDKL 1068 (1087)
Q Consensus 1000 ~~~~~---~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~i~~c~~l 1068 (1087)
.+..+ ...+.++.++++++.+.. .+|..+.++++|++|++++| .++.+|... ..++|+.|++++|+..
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 33322 234556666666665543 24455566677777777763 566666532 2456777777766543
No 67
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=1.3e-14 Score=162.69 Aligned_cols=291 Identities=15% Similarity=0.156 Sum_probs=177.6
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc------c
Q 047894 164 TEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF------D 237 (1087)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~------~ 237 (1087)
.+..|+||+++++++.+++... +++.|+|++|+|||||++++++.. . .+|+.+.... +
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~-------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER-------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS-------S-EEEEEHHHHHHTTTCBC
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc-------C-cEEEEeecccccccCCC
Confidence 4567999999999999998642 489999999999999999998752 1 5677765432 4
Q ss_pred HHHHHHHHHHHhhc-----------------CCC-CcccHHHHHHHHHHhhCC-CceEEEEecCCCCCH------hhHHH
Q 047894 238 VLGISKALLESITS-----------------AAS-DLKTLNEVQVQLKKAVDG-KRFLLVLDDVWNEDY------SLWVD 292 (1087)
Q Consensus 238 ~~~~~~~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~------~~~~~ 292 (1087)
...+...+.+.+.. ... ......++...+.+.... ++++|||||++..+. ..+..
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 55566666555432 000 123455666666655543 389999999966321 12222
Q ss_pred hhcccccCCCCcEEEEEcCCccc-cc---------cc-CC-CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHH
Q 047894 293 LKAPFLAAEPNSKMIVTTRNSNV-AS---------TM-GP-IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRK 360 (1087)
Q Consensus 293 l~~~l~~~~~~s~ilvTtr~~~v-~~---------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 360 (1087)
....+....++.++|+|++...+ .. .. +. ...+.+.+|+.+|+.+++.......... ...+.+.
T Consensus 154 ~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~----~~~~~~~ 229 (350)
T 2qen_A 154 LFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD----VPENEIE 229 (350)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHH
T ss_pred HHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHH
Confidence 22222222257889999886532 11 01 11 2478999999999999998754221111 1234667
Q ss_pred HHHHHhCCchhHHHHHHhhhcC-CCHHHHH-HHHhhhccCCCCCCChHHHHHhhhcCC---chhhHHHHHHHccCCCCcc
Q 047894 361 KVVAKCGGLALAAKTLGGLLRT-TRHDAWD-DILESKIWDLPRQSGVLPVLRLSYHHL---PSHLKRCLAYCAIFPKDYE 435 (1087)
Q Consensus 361 ~i~~~c~g~PLai~~~~~~l~~-~~~~~w~-~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~~s~fp~~~~ 435 (1087)
+|++.|+|+|+++..++..+.. .+...+. .+.+. +...+.-.+..+ ++..+..+..+|. + .
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV----------AKGLIMGELEELRRRSPRYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-C
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-C
Confidence 8999999999999998875432 2222221 11111 111111112222 7888999999987 2 1
Q ss_pred cChhhhHHHhHhCCCcccCCchhhHHHHHHHHHHHHhhCCCCcccccCCcccEEE-cHHHHHHHH
Q 047894 436 FNEKEVTFLWMAGGIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTAISDSCKFVM-HDLIHDLAE 499 (1087)
Q Consensus 436 i~~~~li~~w~aeg~i~~~~~~~~~e~~~~~~~~~L~~~~l~~~~~~~~~~~~~~-h~~v~~~~~ 499 (1087)
++...+.....+.. -. .+ ......+++.|++.+++.... +.|.+ |++++++.+
T Consensus 296 ~~~~~l~~~~~~~~-~~-----~~-~~~~~~~l~~L~~~gli~~~~----~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 NRWSLIRDYLAVKG-TK-----IP-EPRLYALLENLKKMNWIVEED----NTYKIADPVVATVLR 349 (350)
T ss_dssp CSHHHHHHHHHHTT-CC-----CC-HHHHHHHHHHHHHTTSEEEET----TEEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHHh-CC-----CC-HHHHHHHHHHHHhCCCEEecC----CEEEEecHHHHHHHc
Confidence 34445544332211 00 01 234568899999999998652 45654 888887754
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=3e-15 Score=163.99 Aligned_cols=241 Identities=18% Similarity=0.151 Sum_probs=122.6
Q ss_pred cEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC--CCCCcCCcceeeccCCCCceeec---cccccCCcccCCC
Q 047894 764 KVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP--SLGRLSSLKHLAVKGLKKLKSIE---SEVYGEGFSMPFP 838 (1087)
Q Consensus 764 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~---~~~~~~~~~~~fp 838 (1087)
.+...+.....+|..+ .++|+.|++++|.+.. +| .++.+++|++|+++++. +..++ ..+. .++
T Consensus 11 ~l~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~------~~~ 78 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI----PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDF------GTT 78 (306)
T ss_dssp EEECCSSCCSSCCSCC----CTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHH------SCS
T ss_pred EEEcCCCCcccCCCCC----CCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCc-cCcccCcccccc------ccc
Confidence 4455555566677654 4689999999998754 44 37899999999998864 22221 1111 256
Q ss_pred CccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEe
Q 047894 839 SLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEV 918 (1087)
Q Consensus 839 ~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~ 918 (1087)
+|+.|++++...- ..... ...+++|++|++.++ .+++ ++. .
T Consensus 79 ~L~~L~Ls~n~i~-~l~~~------~~~l~~L~~L~l~~n-~l~~-~~~------------------------------~ 119 (306)
T 2z66_A 79 SLKYLDLSFNGVI-TMSSN------FLGLEQLEHLDFQHS-NLKQ-MSE------------------------------F 119 (306)
T ss_dssp CCCEEECCSCSEE-EEEEE------EETCTTCCEEECTTS-EEES-STT------------------------------T
T ss_pred ccCEEECCCCccc-cChhh------cCCCCCCCEEECCCC-cccc-ccc------------------------------c
Confidence 6666666553211 11000 123555666666555 3331 110 0
Q ss_pred ccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCC
Q 047894 919 DECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASS 998 (1087)
Q Consensus 919 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~ 998 (1087)
..+..+++|++|++++|.+....+.. +..+++|+.|++++|..... .+|. .+..+++|+.|++++|.+++
T Consensus 120 ~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~----~~~~-----~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQEN----FLPD-----IFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGG----EECS-----CCTTCTTCCEEECTTSCCCE
T ss_pred hhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccc----cchh-----HHhhCcCCCEEECCCCCcCC
Confidence 12233445555555555543333332 23455556666555542110 0111 23344555555555555555
Q ss_pred CCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCC---CCCCCCcCeEEEccCC
Q 047894 999 SSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPE---RGLPNTISAVYICECD 1066 (1087)
Q Consensus 999 ~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~---~~~~~sL~~L~i~~c~ 1066 (1087)
..+..+..+++|++|++++|.+....+..+..+++|++|++++|+ ++..+. ..++++|+.|++++|+
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 555555555666666666665544333345555666666666542 333222 1223456666665554
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=2.7e-16 Score=172.51 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=63.6
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCc--ccccccc-------cCCCCcEEEecCCCCCcccCccc
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIK--SLPESTC-------KLLNLEILILRNCSRLIKLPPKM 644 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~--~lp~~i~-------~L~~L~~L~L~~~~~l~~lp~~i 644 (1087)
+...++|+.|++++|.+ .+|..+... |++|++++|.++ .+|..+. ++.+|++|++++|.....+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 44556788888888888 778777654 888888888875 4566555 68888888888877555777776
Q ss_pred --CCCCCcCEEeecCCc
Q 047894 645 --RNLINLNHLDIRGAK 659 (1087)
Q Consensus 645 --~~L~~L~~L~l~~~~ 659 (1087)
..+++|++|++++|.
T Consensus 116 ~~~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVS 132 (312)
T ss_dssp SSCCSCCCSEEEEESCB
T ss_pred HHhcCCCccEEEccCCC
Confidence 788888888888876
No 70
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.59 E-value=1e-14 Score=167.45 Aligned_cols=313 Identities=12% Similarity=0.026 Sum_probs=184.3
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCcEEEEE--EecCCChHHHHHHHHhccccccc--cCCC-eEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMV-LADTPRDHPNFVVIPI--VGMGGIGKTTLAREVYNDKAVRD--SKFD-VKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l-~~~~~~~~~~~~vv~I--~G~~GvGKTtLa~~v~~~~~~~~--~~f~-~~~wv~~s~~~~~~ 239 (1087)
..++||+++++++.+++ .....+.......+.| +|++|+||||||+.+++...... ..+. .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 4321100012246666 99999999999999998653210 0122 35777776667788
Q ss_pred HHHHHHHHHhhcCCC-CcccHHHHHHHHHHhhC--CCceEEEEecCCCCC------HhhHHHhhcccccC---C--CCcE
Q 047894 240 GISKALLESITSAAS-DLKTLNEVQVQLKKAVD--GKRFLLVLDDVWNED------YSLWVDLKAPFLAA---E--PNSK 305 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~~s~ 305 (1087)
.++..++.+++.... ...+..++...+.+.+. +++++|||||+|.-. ...+..+...+... . .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 899999998865432 12344555666666664 679999999996521 23333333333221 2 3445
Q ss_pred EEEEcCCccccccc--------CC-CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhC------Cch
Q 047894 306 MIVTTRNSNVASTM--------GP-IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCG------GLA 370 (1087)
Q Consensus 306 ilvTtr~~~v~~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~------g~P 370 (1087)
||+||+...+...+ .. ...+.+++++.++++++|..++...... .....+....|++.|+ |.|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCcH
Confidence 88888755432111 11 1239999999999999997654211110 1122456778999999 999
Q ss_pred hHHHHHHhhhc------CC---CHHHHHHHHhhhccCCCCCCChHHHHHhhhcCCchhhHHHHHHHccCC--CCcccChh
Q 047894 371 LAAKTLGGLLR------TT---RHDAWDDILESKIWDLPRQSGVLPVLRLSYHHLPSHLKRCLAYCAIFP--KDYEFNEK 439 (1087)
Q Consensus 371 Lai~~~~~~l~------~~---~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~ 439 (1087)
..+..+..... .. +.+.+..+...... ...+.-++..||++.+.++..++.+. .+..+...
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~ 331 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAG 331 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHH
Confidence 76655543211 11 34445444432110 23345567899999999998888653 22345555
Q ss_pred hhHHHhH--h---CCCcccCCchhhHHHHHHHHHHHHhhCCCCcccccC--CcccEEEcHHH
Q 047894 440 EVTFLWM--A---GGIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTAIS--DSCKFVMHDLI 494 (1087)
Q Consensus 440 ~li~~w~--a---eg~i~~~~~~~~~e~~~~~~~~~L~~~~l~~~~~~~--~~~~~~~h~~v 494 (1087)
.+...|. + .|. .. . .......++++|++.+++...... ..++|++|.+.
T Consensus 332 ~~~~~~~~~~~~~~~~-~~----~-~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 332 LLRQRYEDASLTMYNV-KP----R-GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHSCC-CC----C-CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHhhcCC-CC----C-CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 5544432 1 121 00 0 123356789999999999875421 23445555443
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=1.6e-15 Score=166.71 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=48.0
Q ss_pred cccCCCCcccEEEecCCCCcccC-ccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCc
Q 047894 572 DLLPKFKRLRMLSLQGYCIGELP-IPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINL 650 (1087)
Q Consensus 572 ~~~~~~~~Lr~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 650 (1087)
..+..+++|++|++++|.++.++ ..|+.+.+|++|++++|.++..+. +..+++|++|++++|. +..+|. .++|
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~~~L 101 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSI 101 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----CTTC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC----CCCc
Confidence 34455556666666666665553 456666666666666666665544 6666666666666654 344332 3566
Q ss_pred CEEeecCCc
Q 047894 651 NHLDIRGAK 659 (1087)
Q Consensus 651 ~~L~l~~~~ 659 (1087)
++|++++|.
T Consensus 102 ~~L~l~~n~ 110 (317)
T 3o53_A 102 ETLHAANNN 110 (317)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 666666554
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=1.6e-14 Score=156.35 Aligned_cols=177 Identities=17% Similarity=0.159 Sum_probs=89.1
Q ss_pred CCcccEEEEecCCCccccCC---CCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCch
Q 047894 867 FPRLHKLSIVECPKLSGELP---ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPE 943 (1087)
Q Consensus 867 ~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~ 943 (1087)
+++|++|+++++ .+++..| ..+++|++|++++|..+. .+....+..+++|++|++++|.+....+.
T Consensus 55 ~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 123 (285)
T 1ozn_A 55 CRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLR----------SVDPATFHGLGRLHTLHLDRCGLQELGPG 123 (285)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCC----------CCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCcc----------ccCHHHhcCCcCCCEEECCCCcCCEECHh
Confidence 556666666655 4442222 234556666665553211 11112334455566666666654433333
Q ss_pred hhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcc
Q 047894 944 EMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLES 1023 (1087)
Q Consensus 944 ~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 1023 (1087)
. +..+++|+.|++++|.. +.++.. .+.++++|+.|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 124 ~-~~~l~~L~~L~l~~n~l-~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 124 L-FRGLAALQYLYLQDNAL-QALPDD---------TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp T-TTTCTTCCEEECCSSCC-CCCCTT---------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred H-hhCCcCCCEEECCCCcc-cccCHh---------HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 2 24556666666665542 211110 123445555555666655554444455566666666666665555
Q ss_pred cCCCCCCCCCccEEEEecCCCCcccCCC--CCCCCcCeEEEccCC
Q 047894 1024 IPDGLPNLKCLQSICIRKCPSLVSFPER--GLPNTISAVYICECD 1066 (1087)
Q Consensus 1024 ~p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~ 1066 (1087)
.|..+.++++|++|++++| .++.+|.. ...++|+.|++++|+
T Consensus 193 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 5555666666666666663 44444431 223456666666554
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=2.9e-15 Score=174.50 Aligned_cols=217 Identities=12% Similarity=0.058 Sum_probs=139.2
Q ss_pred cCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeecccccccccccccccccc
Q 047894 784 FCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNV 862 (1087)
Q Consensus 784 l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~ 862 (1087)
+++|+.|+|++|.+....| .++.+++|++|+|+++......+ + ..+++|+.|++++.. +.+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l------~~l~~L~~L~Ls~N~--------l~~l- 95 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L------ESLSTLRTLDLNNNY--------VQEL- 95 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C------TTCTTCCEEECCSSE--------EEEE-
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c------ccCCCCCEEEecCCc--------CCCC-
Confidence 4466667776666554333 56666777777776654222111 1 226666666666532 2211
Q ss_pred ccccCCcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCc
Q 047894 863 HVEIFPRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLP 942 (1087)
Q Consensus 863 ~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~ 942 (1087)
...++|+.|++++| .+.+..+..+++|+.|++++|.-.. +....+..+++|++|++++|.+....|
T Consensus 96 --~~~~~L~~L~L~~N-~l~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 96 --LVGPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITM-----------LRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp --EECTTCCEEECCSS-CCCCEEECCCSSCEEEECCSSCCCS-----------GGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred --CCCCCcCEEECcCC-cCCCCCccccCCCCEEECCCCCCCC-----------CCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 12367788888777 5654445567778888877764211 111234456788888888888777666
Q ss_pred hhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCc
Q 047894 943 EEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLE 1022 (1087)
Q Consensus 943 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 1022 (1087)
..+...+++|+.|++++|. ++.++. +..+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~- 227 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNF-IYDVKG-----------QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV- 227 (487)
T ss_dssp GGGGGGTTTCCEEECTTSC-CCEEEC-----------CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-
T ss_pred HHHhhhCCcccEEecCCCc-cccccc-----------cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-
Confidence 6665568888888888877 332221 2246777888888888877443 4777888888888888776
Q ss_pred ccCCCCCCCCCccEEEEecCCCC
Q 047894 1023 SIPDGLPNLKCLQSICIRKCPSL 1045 (1087)
Q Consensus 1023 ~~p~~l~~l~~L~~L~l~~c~~l 1045 (1087)
.+|..+..+++|+.|++++|+..
T Consensus 228 ~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 228 LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECTTCCCCTTCCEEECTTCCBC
T ss_pred ccchhhccCCCCCEEEcCCCCCc
Confidence 46777888888888888886644
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=4.1e-15 Score=163.48 Aligned_cols=151 Identities=12% Similarity=0.005 Sum_probs=81.5
Q ss_pred CcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhc
Q 047894 868 PRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMME 947 (1087)
Q Consensus 868 ~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 947 (1087)
++|+.|++++| .+++..+..+++|++|++++|.-.. +.-..+..+++|++|++++|.+....+..+..
T Consensus 99 ~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 99 PSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITM-----------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp TTCCEEECCSS-CCSEEEECCCSSCEEEECCSSCCCS-----------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred CCcCEEECCCC-ccCCcCccccCCCCEEECCCCCCCC-----------ccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 55666666555 4443333445556666665553111 11112334556666666666655544444434
Q ss_pred CCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCC
Q 047894 948 NNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDG 1027 (1087)
Q Consensus 948 ~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 1027 (1087)
.+++|+.|++++|. ++.++. ...+++|+.|++++|.+++. +..+..+++|++|++++|.+. .+|..
T Consensus 167 ~l~~L~~L~L~~N~-l~~~~~-----------~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~ 232 (317)
T 3o53_A 167 SSDTLEHLNLQYNF-IYDVKG-----------QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKA 232 (317)
T ss_dssp GTTTCCEEECTTSC-CCEEEC-----------CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTT
T ss_pred ccCcCCEEECCCCc-Cccccc-----------ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhH
Confidence 56667777776665 222221 11245566666666666553 233556666666666666554 45556
Q ss_pred CCCCCCccEEEEecCCC
Q 047894 1028 LPNLKCLQSICIRKCPS 1044 (1087)
Q Consensus 1028 l~~l~~L~~L~l~~c~~ 1044 (1087)
+..+++|+.|++++|+.
T Consensus 233 ~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCCCTTCCEEECTTCCC
T ss_pred hhcCCCCCEEEccCCCc
Confidence 66666666666666543
No 75
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=7.3e-14 Score=156.95 Aligned_cols=290 Identities=14% Similarity=0.119 Sum_probs=172.4
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-----ccH
Q 047894 164 TEPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-----FDV 238 (1087)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~ 238 (1087)
.+..|+||+++++++.+ +.. +++.|+|++|+|||+|++++++... . ..+|+.+... .+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN-----L-PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT-----C-CEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC-----C-CEEEEEchhhccccCCCH
Confidence 45679999999999998 632 3899999999999999999987632 1 2578887643 233
Q ss_pred HHHHHHHHHHhhc-------------C-------CC---------CcccHHHHHHHHHHhhCCCceEEEEecCCCCCH--
Q 047894 239 LGISKALLESITS-------------A-------AS---------DLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY-- 287 (1087)
Q Consensus 239 ~~~~~~i~~~l~~-------------~-------~~---------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-- 287 (1087)
..++..+.+.+.. . .. .......+...+.+... ++++|||||++..+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 4444444443311 0 00 12345555555655433 499999999965321
Q ss_pred -hhHHHhhcccccCCCCcEEEEEcCCccccc----------cc-CC-CceeeCCCCChHhHHHHHHHhhcCCCCCCcchh
Q 047894 288 -SLWVDLKAPFLAAEPNSKMIVTTRNSNVAS----------TM-GP-IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQI 354 (1087)
Q Consensus 288 -~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~----------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~ 354 (1087)
..|......+.....+.++|+|++...... .. +. ...+.+.+|+.+|+.+++.......... ..+
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~- 231 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKD- 231 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCC-
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCc-
Confidence 122222222222224789999999754211 01 11 2578999999999999998754211111 111
Q ss_pred hHHHHHHHHHHhCCchhHHHHHHhhhcCC-CHHHHHH-HHhhhccCCCCCCChHHHHH-hhhc--CCchhhHHHHHHHcc
Q 047894 355 SESFRKKVVAKCGGLALAAKTLGGLLRTT-RHDAWDD-ILESKIWDLPRQSGVLPVLR-LSYH--HLPSHLKRCLAYCAI 429 (1087)
Q Consensus 355 ~~~~~~~i~~~c~g~PLai~~~~~~l~~~-~~~~w~~-~~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cf~~~s~ 429 (1087)
. .+|++.|+|+|+++..++..+... +...|.. +.+... ..+...+. +.++ .||+..+..+..+|.
T Consensus 232 ---~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ---Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK------KLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ---H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ---H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH------HHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 1 679999999999999998765432 3333321 111100 00111122 2221 688999999999998
Q ss_pred CCCCcccChhhhHHHhH-hCCCcccCCchhhHHHHHHHHHHHHhhCCCCcccccCCcccEE-EcHHHHHHH
Q 047894 430 FPKDYEFNEKEVTFLWM-AGGIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTAISDSCKFV-MHDLIHDLA 498 (1087)
Q Consensus 430 fp~~~~i~~~~li~~w~-aeg~i~~~~~~~~~e~~~~~~~~~L~~~~l~~~~~~~~~~~~~-~h~~v~~~~ 498 (1087)
+. +...+....- ..|. . . .......+++.|++.+++.... +.|+ .|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~--~----~-~~~~~~~~L~~L~~~gli~~~~----~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI--E----I-SDSEIYNYLTQLTKHSWIIKEG----EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS--C----C-CHHHHHHHHHHHHHTTSEEESS----SCEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC--C----C-CHHHHHHHHHHHHhCCCEEecC----CEEEecCHHHHHhh
Confidence 22 3344332110 0121 0 0 1234568899999999998653 4566 588888764
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=6.6e-14 Score=149.93 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=90.2
Q ss_pred CCcccEEEEecCCCccccCC---CCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCch
Q 047894 867 FPRLHKLSIVECPKLSGELP---ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPE 943 (1087)
Q Consensus 867 ~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~ 943 (1087)
.++|++|+++++ ++++..+ ..+++|++|++++|.- +.+....+.++++|++|++++|.+.. ++.
T Consensus 36 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-----------~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~ 102 (270)
T 2o6q_A 36 PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKL-----------QTLPAGIFKELKNLETLWVTDNKLQA-LPI 102 (270)
T ss_dssp CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCC-----------SCCCTTTTSSCTTCCEEECCSSCCCC-CCT
T ss_pred CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCcc-----------CeeChhhhcCCCCCCEEECCCCcCCc-CCH
Confidence 345666666665 4442211 2345566666655421 11111223445566666666665432 333
Q ss_pred hhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcc
Q 047894 944 EMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLES 1023 (1087)
Q Consensus 944 ~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 1023 (1087)
..+..+++|+.|++++|.. +.++.. .+.++++|+.|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 103 ~~~~~l~~L~~L~l~~n~l-~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQL-KSLPPR---------VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp TTTTTCSSCCEEECCSSCC-CCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred hHcccccCCCEEECCCCcc-CeeCHH---------HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 3334566666666666542 212110 123445566666666666655544555666666666666655544
Q ss_pred cCCCCCCCCCccEEEEecCCCCcccCCCCC--CCCcCeEEEccCC
Q 047894 1024 IPDGLPNLKCLQSICIRKCPSLVSFPERGL--PNTISAVYICECD 1066 (1087)
Q Consensus 1024 ~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~ 1066 (1087)
.+..+..+++|++|++++| .++.+|...+ .++|+.|++++|+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 4444556666666666663 4555555322 2456666666655
No 77
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=7.3e-14 Score=151.09 Aligned_cols=249 Identities=17% Similarity=0.192 Sum_probs=159.5
Q ss_pred EEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceeeccccccCCcccCCCCccEe
Q 047894 765 VAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEIL 843 (1087)
Q Consensus 765 L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L 843 (1087)
+..++.....+|..+ .++|+.|++++|.+....+ .++.+++|++|+++++. +..+....
T Consensus 16 ~~c~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~--------------- 75 (285)
T 1ozn_A 16 TSCPQQGLQAVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAA--------------- 75 (285)
T ss_dssp EECCSSCCSSCCTTC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT---------------
T ss_pred EEcCcCCcccCCcCC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhh---------------
Confidence 444444455556543 4678888888887755443 57788888888887753 22221110
Q ss_pred eccccccccccccccccccccccCCcccEEEEecCCCccccCC---CCCCCccEEEEeecCCccccCCCCCcccEEEecc
Q 047894 844 SFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP---ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDE 920 (1087)
Q Consensus 844 ~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~ 920 (1087)
...+++|++|++.+|+.+....| ..+++|++|++++|.-.. +....
T Consensus 76 --------------------~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~ 124 (285)
T 1ozn_A 76 --------------------FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-----------LGPGL 124 (285)
T ss_dssp --------------------TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC-----------CCTTT
T ss_pred --------------------cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE-----------ECHhH
Confidence 11245566666666533442222 235666777776653211 11133
Q ss_pred CCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCC
Q 047894 921 CKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSS 1000 (1087)
Q Consensus 921 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~ 1000 (1087)
+.++++|++|++++|.+.. ++...+..+++|+.|++++|. ++.++.. .+.++++|+.|++++|.+++..
T Consensus 125 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNR-ISSVPER---------AFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSSCCCEEC
T ss_pred hhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCCc-ccccCHH---------HhcCccccCEEECCCCcccccC
Confidence 5667789999999998654 444445789999999999986 3433321 2446789999999999999988
Q ss_pred CCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCcCeEEEccCCCCCCCCCCC
Q 047894 1001 PSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTISAVYICECDKLEAPPNDM 1075 (1087)
Q Consensus 1001 ~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~~~p~~l 1075 (1087)
|..+..+++|++|++++|.+....+..+..+++|++|++++++.....+...+...++.+.+..+......|+.+
T Consensus 194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGG
T ss_pred HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHh
Confidence 999999999999999999988665567899999999999997644322221111234444444444333445444
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=2.9e-14 Score=156.25 Aligned_cols=202 Identities=19% Similarity=0.196 Sum_probs=138.7
Q ss_pred CCCcccEEEecCCCCc-ccCccc--cCCccceeeccCCCcCcccccccccC-----CCCcEEEecCCCCCcccCcccCCC
Q 047894 576 KFKRLRMLSLQGYCIG-ELPIPF--EELRLLRFLNLADIDIKSLPESTCKL-----LNLEILILRNCSRLIKLPPKMRNL 647 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~-~lp~~i--~~l~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~i~~L 647 (1087)
.+++|++|++++|.+. .+|..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|......|..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5788888888888886 567776 88888888998888888778777777 888889888877444444778888
Q ss_pred CCcCEEeecCCccccc--cCccC--CCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhc
Q 047894 648 INLNHLDIRGAKLLKE--MPCGM--KELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAAL 723 (1087)
Q Consensus 648 ~~L~~L~l~~~~~~~~--~p~~i--~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 723 (1087)
++|++|++++|..... +|..+ +++++|++|+...+. ...........+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~----------------------------l~~~~~~~~~~~ 224 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG----------------------------METPSGVCSALA 224 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC----------------------------CCCHHHHHHHHH
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc----------------------------CcchHHHHHHHH
Confidence 8888988888873332 23344 677777777532211 111122223344
Q ss_pred cCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCC
Q 047894 724 CEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPS 803 (1087)
Q Consensus 724 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 803 (1087)
..+.+|+.|+++++...... ....+...++|+.|.++++....+|.++. ++|+.|++++|.+... |.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p~ 291 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAA--------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-PS 291 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSC--------CCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-CC
T ss_pred hcCCCCCEEECCCCcCCccc--------chhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-hh
Confidence 56778888888766543311 01223345678888888877777777653 6788888888877543 66
Q ss_pred CCCcCCcceeeccCC
Q 047894 804 LGRLSSLKHLAVKGL 818 (1087)
Q Consensus 804 l~~l~~L~~L~L~~~ 818 (1087)
+..+++|++|+++++
T Consensus 292 ~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 292 PDELPQVGNLSLKGN 306 (312)
T ss_dssp TTTSCEEEEEECTTC
T ss_pred HhhCCCCCEEeccCC
Confidence 778888888888765
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=1.2e-13 Score=149.12 Aligned_cols=191 Identities=15% Similarity=0.079 Sum_probs=93.5
Q ss_pred CCcccEEEEecCCCccccCCCC-CCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhh
Q 047894 867 FPRLHKLSIVECPKLSGELPEL-LPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEM 945 (1087)
Q Consensus 867 ~~~L~~L~l~~c~~l~~~~p~~-l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 945 (1087)
+++++++++.++ .++ .+|.. .++++.|++++|. +..+....+..+++|++|++++|.+.. ++..
T Consensus 9 l~~l~~l~~~~~-~l~-~ip~~~~~~l~~L~L~~N~-----------l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~- 73 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLT-ALPPDLPKDTTILHLSENL-----------LYTFSLATLMPYTRLTQLNLDRAELTK-LQVD- 73 (290)
T ss_dssp STTCCEEECTTS-CCS-SCCSCCCTTCCEEECTTSC-----------CSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-
T ss_pred cCCccEEECCCC-CCC-cCCCCCCCCCCEEEcCCCc-----------CCccCHHHhhcCCCCCEEECCCCccCc-ccCC-
Confidence 444555555444 444 34432 2345555555442 223333344455555555555555432 2221
Q ss_pred hcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccC
Q 047894 946 MENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIP 1025 (1087)
Q Consensus 946 ~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p 1025 (1087)
..+++|+.|++++|. ++.++ . .+.++++|+.|++++|++++..+..|..+++|++|++++|.+....+
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~-----~-----~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLP-----L-----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCC-----C-----CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred -CCCCcCCEEECCCCc-CCcCc-----h-----hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 345555555555553 22222 1 12344555555555555555545555555556666666655554433
Q ss_pred CCCCCCCCccEEEEecCCCCcccCCCCC--CCCcCeEEEccCCCCCCCCCCCCCCCCCCcEEe
Q 047894 1026 DGLPNLKCLQSICIRKCPSLVSFPERGL--PNTISAVYICECDKLEAPPNDMHKLNSLQSLSI 1086 (1087)
Q Consensus 1026 ~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~~l~~~p~~l~~l~~L~~l~i 1086 (1087)
..+..+++|+.|++++ +.++.+|...+ +++|+.|++++|. ++.+|..+..+..|+.+++
T Consensus 142 ~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp TTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEEC
T ss_pred hhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEe
Confidence 4445555666666655 34555554322 2455566665553 3445555555555555554
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=2.7e-15 Score=174.79 Aligned_cols=234 Identities=16% Similarity=0.147 Sum_probs=168.3
Q ss_pred CCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeeccccccccccccccccccccccCCcccEEEEecCCCcccc
Q 047894 805 GRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGE 884 (1087)
Q Consensus 805 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 884 (1087)
..+++|++|+|+++. +..++.... ..+++|+.|++++.. +.+..+...+++|+.|++++| .++ .
T Consensus 31 ~~~~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~Ls~N~--------l~~~~~l~~l~~L~~L~Ls~N-~l~-~ 94 (487)
T 3oja_A 31 QSAWNVKELDLSGNP-LSQISAADL-----APFTKLELLNLSSNV--------LYETLDLESLSTLRTLDLNNN-YVQ-E 94 (487)
T ss_dssp TTGGGCCEEECCSSC-CCCCCGGGG-----TTCTTCCEEECTTSC--------CEEEEECTTCTTCCEEECCSS-EEE-E
T ss_pred ccCCCccEEEeeCCc-CCCCCHHHH-----hCCCCCCEEEeeCCC--------CCCCcccccCCCCCEEEecCC-cCC-C
Confidence 456799999999974 333332221 238899999998853 333333456899999999999 676 3
Q ss_pred CCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCc
Q 047894 885 LPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLT 964 (1087)
Q Consensus 885 ~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 964 (1087)
+|. .++|++|++++|.- ..+.. ..+++|++|++++|.+....|..+ ..+++|+.|++++|..-.
T Consensus 95 l~~-~~~L~~L~L~~N~l-----------~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 95 LLV-GPSIETLHAANNNI-----------SRVSC---SRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp EEE-CTTCCEEECCSSCC-----------CCEEE---CCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCE
T ss_pred CCC-CCCcCEEECcCCcC-----------CCCCc---cccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCC
Confidence 443 38899999998742 22222 245789999999999876656554 679999999999987433
Q ss_pred ccccCCCCCCCCEEEEe-cccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCC
Q 047894 965 FIARRRLPASLKRLEIE-NCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCP 1043 (1087)
Q Consensus 965 ~~~~~~l~~~L~~L~l~-~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~ 1043 (1087)
..+. .+. .+++|+.|++++|.+++.. ....+++|++|++++|.+.+ +|..+..+++|+.|++++ +
T Consensus 159 ~~~~----------~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~-N 224 (487)
T 3oja_A 159 VNFA----------ELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRN-N 224 (487)
T ss_dssp EEGG----------GGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTT-S
T ss_pred cChH----------HHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecC-C
Confidence 3322 122 5688899999999888763 23468999999999998875 555688999999999999 5
Q ss_pred CCcccCCC-CCCCCcCeEEEccCCCC-CCCCCCCCCCCCCCcE
Q 047894 1044 SLVSFPER-GLPNTISAVYICECDKL-EAPPNDMHKLNSLQSL 1084 (1087)
Q Consensus 1044 ~l~~lp~~-~~~~sL~~L~i~~c~~l-~~~p~~l~~l~~L~~l 1084 (1087)
.++.+|.. +.+++|+.|++++|+.. ..+|..+..++.|+.+
T Consensus 225 ~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 68888873 44579999999999865 2445555555555443
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=2.6e-13 Score=142.43 Aligned_cols=194 Identities=17% Similarity=0.150 Sum_probs=144.7
Q ss_pred cCCcccEEEEecCCCccccCC---CCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEecc-CCCCCCC
Q 047894 866 IFPRLHKLSIVECPKLSGELP---ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICN-STALKSL 941 (1087)
Q Consensus 866 ~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~-~~~~~~~ 941 (1087)
..++|+.|++.++ ++++..+ ..+++|++|++++|.. ++.+....+.++++|++|++++ |.+ ..+
T Consensus 29 ~~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~----------l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i 96 (239)
T 2xwt_C 29 LPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVT----------LQQLESHSFYNLSKVTHIEIRNTRNL-TYI 96 (239)
T ss_dssp CCTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSS----------CCEECTTTEESCTTCCEEEEEEETTC-CEE
T ss_pred CCCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCC----------cceeCHhHcCCCcCCcEEECCCCCCe-eEc
Confidence 3458999999998 6763322 3578999999998742 3333334567788999999998 664 455
Q ss_pred chhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCcc---ccccccC-CCCCCCCCCCCCCCCcc-EEEEe
Q 047894 942 PEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQ---RLFDDEG-DASSSSPSSSSSPVMLQ-LLRIE 1016 (1087)
Q Consensus 942 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~---~l~l~~n-~~~~~~~~~~~~l~~L~-~L~l~ 1016 (1087)
+...+..+++|+.|++++|. ++.+|. +..+++|+ .|++++| .+++..+..+..+++|+ +|+++
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-l~~lp~-----------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-LKMFPD-----------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-CCSCCC-----------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred CHHHhCCCCCCCEEeCCCCC-Cccccc-----------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 55445789999999999986 333332 34455565 8888888 78877777789999999 99999
Q ss_pred ccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCC--C-CCcCeEEEccCCCCCCCCCCCCCCCCCCcEEeC
Q 047894 1017 NCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGL--P-NTISAVYICECDKLEAPPNDMHKLNSLQSLSIK 1087 (1087)
Q Consensus 1017 ~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~-~sL~~L~i~~c~~l~~~p~~l~~l~~L~~l~i~ 1087 (1087)
+|.+. .+|......++|++|++++|+.++.+|...+ . ++|+.|++++|. ++.+|.. .+++|+.|+++
T Consensus 165 ~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp SCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECT
T ss_pred CCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeecc
Confidence 99887 6665544448999999999777999987544 3 789999999976 5666754 67788888764
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=2.3e-13 Score=142.85 Aligned_cols=199 Identities=14% Similarity=0.103 Sum_probs=144.3
Q ss_pred CCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCC---CCCCCccEEEEeecCCccccCCCCCccc
Q 047894 838 PSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP---ELLPSLETLVVSKCGKLVVPLSCYPMLC 914 (1087)
Q Consensus 838 p~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~~~~~~~~~~~L~ 914 (1087)
++|+.|++.+.. +...... ....+++|++|++.+|..++...+ ..+++|++|++++|. .++
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~-----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n----------~l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSH-----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR----------NLT 94 (239)
T ss_dssp TTCCEEEEESCC-CSEECTT-----TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET----------TCC
T ss_pred CcccEEEEeCCc-ceEECHH-----HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC----------Cee
Confidence 468888887643 1111100 023478999999999954663222 357899999999842 234
Q ss_pred EEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCc---eEEeccCCCCcccccCCCCCCCCEEEEecccCcc-ccc
Q 047894 915 RLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLE---KLYIRDCESLTFIARRRLPASLKRLEIENCEKLQ-RLF 990 (1087)
Q Consensus 915 ~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~-~l~ 990 (1087)
.+....+.++++|++|++++|.+.. +|. +..+++|+ .|++++|+.++.++.. .+.+|++|+ .++
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~---------~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVN---------AFQGLCNETLTLK 162 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTT---------TTTTTBSSEEEEE
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcc---------cccchhcceeEEE
Confidence 4444556678899999999999655 665 46788888 9999999666655532 245678899 999
Q ss_pred cccCCCCCCCCCCCCCCCCccEEEEeccC-CCcccCCCCCCC-CCccEEEEecCCCCcccCCCCCCCCcCeEEEccCCC
Q 047894 991 DDEGDASSSSPSSSSSPVMLQLLRIENCR-KLESIPDGLPNL-KCLQSICIRKCPSLVSFPERGLPNTISAVYICECDK 1067 (1087)
Q Consensus 991 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~p~~l~~l-~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~ 1067 (1087)
+++|.++...+..+.. ++|++|++++|+ +....+..+.++ ++|+.|++++ +.++.+|.. .+++|+.|++.+|..
T Consensus 163 l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 163 LYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp CCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC--
T ss_pred cCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccC
Confidence 9999988544444555 899999999996 654445678889 9999999999 678899986 456999999998864
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=1.2e-12 Score=145.93 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=37.4
Q ss_pred cEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcceeeccCCCCceee
Q 047894 764 KVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKHLAVKGLKKLKSI 824 (1087)
Q Consensus 764 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~ 824 (1087)
.+..++.....+|..+ .++++.|+|++|.+....+ .|.++++|++|+|+++...+.+
T Consensus 13 ~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i 70 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70 (350)
T ss_dssp EEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEE
T ss_pred EEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCcc
Confidence 3445555566677654 4578888888887754332 4778888888888876544433
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.47 E-value=1.6e-13 Score=149.70 Aligned_cols=189 Identities=16% Similarity=0.166 Sum_probs=111.5
Q ss_pred CCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEee
Q 047894 576 KFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDI 655 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 655 (1087)
.+++|++|++++|.+..+| .+..+.+|++|++++|.++.+|. +..+++|++|++++|. +..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 3556777777777776665 56677777777777777776666 7777777777777765 55555 4667777777777
Q ss_pred cCCccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEE
Q 047894 656 RGAKLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLD 735 (1087)
Q Consensus 656 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 735 (1087)
++|. +..+|. +..+++|+.|+...+.... .. .+..+.+|+.|+++
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~----------------------------~~-----~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITN----------------------------IS-----PLAGLTNLQYLSIG 159 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSCCCC----------------------------CG-----GGGGCTTCCEEECC
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCccCc----------------------------Cc-----cccCCCCccEEEcc
Confidence 7776 444543 6666666666433221100 00 03344456666665
Q ss_pred eeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCCCCcCCcceeec
Q 047894 736 WVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSLGRLSSLKHLAV 815 (1087)
Q Consensus 736 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 815 (1087)
.+...+ +..+...++|+.|.++++....++. +. .+++|+.|++++|.+.. ++++..+++|+.|++
T Consensus 160 ~n~l~~-----------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~l 224 (308)
T 1h6u_A 160 NAQVSD-----------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISD-VSPLANTSNLFIVTL 224 (308)
T ss_dssp SSCCCC-----------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEE
T ss_pred CCcCCC-----------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCc-cccccCCCCCCEEEc
Confidence 443221 1113444555566665555554443 22 26777777777776643 334677777777777
Q ss_pred cCC
Q 047894 816 KGL 818 (1087)
Q Consensus 816 ~~~ 818 (1087)
+++
T Consensus 225 ~~N 227 (308)
T 1h6u_A 225 TNQ 227 (308)
T ss_dssp EEE
T ss_pred cCC
Confidence 765
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=1.5e-13 Score=147.79 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=70.3
Q ss_pred CCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCC-
Q 047894 921 CKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSS- 999 (1087)
Q Consensus 921 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~- 999 (1087)
+.++++|++|++++|.+....+.. +..+++|+.|++++|.... ++.. .+..+++|+.|++++|.+++.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~---------~~~~l~~L~~L~l~~n~l~~~~ 140 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLAS-LENF---------PIGHLKTLKELNVAHNLIQSFK 140 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTSCCCC-STTC---------CCTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCcCCCEEECCCCccCccChhh-hcCCccccEEECCCCCccc-cCch---------hcccCCCCCEEECcCCccceec
Confidence 444455555555555543332222 2445555555555544211 1100 133445555555555555543
Q ss_pred CCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCcc----EEEEecCCCCcccCCCCCC-CCcCeEEEccCCCCCCCC-C
Q 047894 1000 SPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQ----SICIRKCPSLVSFPERGLP-NTISAVYICECDKLEAPP-N 1073 (1087)
Q Consensus 1000 ~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~----~L~l~~c~~l~~lp~~~~~-~sL~~L~i~~c~~l~~~p-~ 1073 (1087)
.|..+..+++|++|++++|.+....+..+..+++|+ +|++++ +.++.++...+. .+|+.|++++|. ++.+| .
T Consensus 141 l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 218 (276)
T 2z62_A 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDG 218 (276)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSSC-CSCCCTT
T ss_pred CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCCc-eeecCHh
Confidence 244455555555555555555443333343333333 555555 334444442221 245555555554 23333 2
Q ss_pred CCCCCCCCCcEEe
Q 047894 1074 DMHKLNSLQSLSI 1086 (1087)
Q Consensus 1074 ~l~~l~~L~~l~i 1086 (1087)
.+..+++|+.|++
T Consensus 219 ~~~~l~~L~~L~l 231 (276)
T 2z62_A 219 IFDRLTSLQKIWL 231 (276)
T ss_dssp TTTTCCSCCEEEC
T ss_pred HhcccccccEEEc
Confidence 3455555555554
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=9.7e-16 Score=185.42 Aligned_cols=128 Identities=19% Similarity=0.256 Sum_probs=68.9
Q ss_pred cCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcc-----cCccccCCccceeeccCCCc--Cc--
Q 047894 544 EIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGE-----LPIPFEELRLLRFLNLADID--IK-- 614 (1087)
Q Consensus 544 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~--i~-- 614 (1087)
.+++|+.|.+..+.. .....+..++.++++|++|++++|.++. ++.....+++|++|++++|. +.
T Consensus 128 ~~~~L~~L~L~~~~~------~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEG------FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS 201 (594)
T ss_dssp HCTTCCEEEEESCEE------EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHH
T ss_pred hCCCCcEEeCCCcCC------CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHH
Confidence 456666666543321 1122233344456677777777766432 22223355677777777665 22
Q ss_pred ccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCCcc------ccccCccCCCCCCCCcc
Q 047894 615 SLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKL------LKEMPCGMKELKKLRTL 677 (1087)
Q Consensus 615 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~------~~~~p~~i~~L~~L~~L 677 (1087)
.++..+.++++|++|++++|..+..+|..+.++++|++|+++++.. +..++..+.++++|+.|
T Consensus 202 ~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 202 ALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp HHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred HHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 2233334567777777777655555666666677777777554421 12233345555555555
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.44 E-value=3.4e-13 Score=145.06 Aligned_cols=203 Identities=17% Similarity=0.084 Sum_probs=114.1
Q ss_pred CcccEEEecCCCCcccCc-cccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEee
Q 047894 578 KRLRMLSLQGYCIGELPI-PFEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDI 655 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 655 (1087)
+.|++|++++|.++.++. .|+++.+|++|++++|.++.+|. .+.++++|++|++++|......|..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 356677777777666643 56667777777777777666543 5666777777777766533333355666777777777
Q ss_pred cCCccccccCc-cCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEE
Q 047894 656 RGAKLLKEMPC-GMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTL 734 (1087)
Q Consensus 656 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 734 (1087)
++|. +..++. .++++++|++|+...+.... . ..+..+..+.+|+.|++
T Consensus 108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~-----~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 108 VETN-LASLENFPIGHLKTLKELNVAHNLIQS-------------------------F-----KLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC-------------------------C-----CCCGGGGGCTTCCEEEC
T ss_pred CCCC-ccccCchhcccCCCCCEEECcCCccce-------------------------e-----cCchhhccCCCCCEEEC
Confidence 7666 333433 45666666666433221110 0 00112334445566665
Q ss_pred EeeCCCCCCcchhhHHHhhhccCCCCCcc-cEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCC-CCCCcCCcce
Q 047894 735 DWVSQFGNSRDVAVEEHVLDILQPHKCIK-KVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLP-SLGRLSSLKH 812 (1087)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 812 (1087)
+++...... ...+..+.....+. .|.++++....+|..... ..+|+.|++++|.+....+ .++.+++|+.
T Consensus 157 s~N~l~~~~------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 157 SSNKIQSIY------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp CSSCCCEEC------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCCCCCcCC------HHHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhcccccccE
Confidence 544322110 01111222222222 566666666666555433 4589999999998765433 4688999999
Q ss_pred eeccCCC
Q 047894 813 LAVKGLK 819 (1087)
Q Consensus 813 L~L~~~~ 819 (1087)
|++++++
T Consensus 229 L~l~~N~ 235 (276)
T 2z62_A 229 IWLHTNP 235 (276)
T ss_dssp EECCSSC
T ss_pred EEccCCc
Confidence 9988763
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=1.7e-13 Score=146.82 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=96.1
Q ss_pred CCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCC
Q 047894 921 CKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSS 1000 (1087)
Q Consensus 921 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~ 1000 (1087)
+..+++|++|++++|.+.. ++...+..+++|+.|++++|. ++.++.. .+.++++|+.|++++|.+++..
T Consensus 105 ~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQ-LQSLPKG---------VFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSSCCCCCC
T ss_pred hcCCcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECCCCc-cCccCHH---------HhccCccCCEEECCCCCcCccC
Confidence 4556677788888887554 333334677888888888875 3333221 1345677788888888888766
Q ss_pred CCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCcCeEEEccCCCCCCCCCCCCCCC
Q 047894 1001 PSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTISAVYICECDKLEAPPNDMHKLN 1079 (1087)
Q Consensus 1001 ~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~~~p~~l~~l~ 1079 (1087)
+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|+.... +++|+.|.++.|.....+|..+.++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 66677888888888888888766666678888888888888754332 33677777776665555666555443
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.43 E-value=8.1e-13 Score=142.54 Aligned_cols=79 Identities=23% Similarity=0.186 Sum_probs=38.5
Q ss_pred cccEEEecCCCCccc-CccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecC
Q 047894 579 RLRMLSLQGYCIGEL-PIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRG 657 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 657 (1087)
.+++|+|++|.+..+ |..|..+.+|++|++++|.|+.+|.. +.+++|++|++++|. +..+|..+..+++|++|++++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCC
Confidence 445555555554443 23445555555555555555544432 445555555555443 344454444555555555555
Q ss_pred Cc
Q 047894 658 AK 659 (1087)
Q Consensus 658 ~~ 659 (1087)
|.
T Consensus 110 N~ 111 (290)
T 1p9a_G 110 NR 111 (290)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.43 E-value=1e-12 Score=140.61 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=94.6
Q ss_pred cCCcccEEEEecCCCccccCC----CCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCC
Q 047894 866 IFPRLHKLSIVECPKLSGELP----ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSL 941 (1087)
Q Consensus 866 ~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 941 (1087)
.+++|++|++.++ .++ .+| ..+++|++|++++|.-. .+....+..+++|++|++++|.+....
T Consensus 59 ~l~~L~~L~l~~n-~l~-~i~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 125 (270)
T 2o6q_A 59 RLTKLRLLYLNDN-KLQ-TLPAGIFKELKNLETLWVTDNKLQ-----------ALPIGVFDQLVNLAELRLDRNQLKSLP 125 (270)
T ss_dssp SCTTCCEEECCSS-CCS-CCCTTTTSSCTTCCEEECCSSCCC-----------CCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCCCCEEECCCC-ccC-eeChhhhcCCCCCCEEECCCCcCC-----------cCCHhHcccccCCCEEECCCCccCeeC
Confidence 3667777777776 454 333 24567777777766321 112233455667777777777754433
Q ss_pred chhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCC
Q 047894 942 PEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKL 1021 (1087)
Q Consensus 942 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~ 1021 (1087)
+. .+..+++|+.|++++|. ++.++.. .+.++++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 126 ~~-~~~~l~~L~~L~Ls~n~-l~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 126 PR-VFDSLTKLTYLSLGYNE-LQSLPKG---------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TT-TTTTCTTCCEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred HH-HhCcCcCCCEEECCCCc-CCccCHh---------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 33 33567777777777765 3322221 1344566777777777777766666677777777777777666
Q ss_pred cccCCCCCCCCCccEEEEecCC
Q 047894 1022 ESIPDGLPNLKCLQSICIRKCP 1043 (1087)
Q Consensus 1022 ~~~p~~l~~l~~L~~L~l~~c~ 1043 (1087)
...+..+..+++|+.|+++++|
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCHHHhccccCCCEEEecCCC
Confidence 5444456677777777777755
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=2.2e-14 Score=159.64 Aligned_cols=204 Identities=12% Similarity=0.082 Sum_probs=119.6
Q ss_pred CcccEEEecCCCCcccCccccCCccceeeccCCCcCcc--cccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEee
Q 047894 578 KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKS--LPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDI 655 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 655 (1087)
+.+++|++++|.+...+..+..+.+|++|++++|.+.. +|..+..+++|++|++++|......|..+.++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 56777777777776666666677778888887777662 6677777778888888777644456666777777888877
Q ss_pred cCCcccc--ccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChh-hHHHHhccCCC-CCCe
Q 047894 656 RGAKLLK--EMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQ-NAREAALCEKH-NLEA 731 (1087)
Q Consensus 656 ~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~-~~~~~~l~~~~-~L~~ 731 (1087)
++|..+. .+|..+.++++|++|+...+. .+. ......+..++ +|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~------------------------------~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCF------------------------------DFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCT------------------------------TCCHHHHHHHHHHSCTTCCE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCC------------------------------CcChHHHHHHHHhcccCCCE
Confidence 7773233 234434555555555432110 001 11223344455 5666
Q ss_pred eEEEeeC-CCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCC-CC-CCCCCCCcC
Q 047894 732 LTLDWVS-QFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDN-CV-SLPSLGRLS 808 (1087)
Q Consensus 732 L~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~-~~-~l~~l~~l~ 808 (1087)
|+++++. ...+ ..+|..+. .+++|+.|++++|.. .. .++.++.++
T Consensus 200 L~l~~~~~~~~~------------------------------~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 200 LNLSGYRKNLQK------------------------------SDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp EECCSCGGGSCH------------------------------HHHHHHHH--HCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred EEeCCCcccCCH------------------------------HHHHHHHh--hCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 6665432 0000 11222222 267788888888873 32 344677788
Q ss_pred CcceeeccCCCCceeeccccccCCcccCCCCccEeecccc
Q 047894 809 SLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENL 848 (1087)
Q Consensus 809 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l 848 (1087)
+|++|++++|..+....... ...+|+|+.|++.++
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~-----l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLE-----LGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGG-----GGGCTTCCEEECTTS
T ss_pred CCCEeeCCCCCCCCHHHHHH-----HhcCCCCCEEeccCc
Confidence 88888888875332211111 123777788877765
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=142.73 Aligned_cols=208 Identities=15% Similarity=0.130 Sum_probs=118.1
Q ss_pred cCcccEEeeeCCCCCCCCC-CC--CCcCCcceeeccCCCCceeeccccccCCcccCCCCccEeecccccccccccccccc
Q 047894 784 FCKIELLELENCDNCVSLP-SL--GRLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFENLAEWEHWDTDIKG 860 (1087)
Q Consensus 784 l~~L~~L~L~~~~~~~~l~-~l--~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~l~~l~~~~~~~~~ 860 (1087)
+++|+.|++++|.+....| .+ +.+++|++|+++++..-. ..+.+..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-------------~~~~~~~------------------ 138 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT-------------GRSWLAE------------------ 138 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS-------------TTSSHHH------------------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc-------------hhhhhHH------------------
Confidence 4568888888888766555 34 778888888888753110 0110000
Q ss_pred ccccccCCcccEEEEecCCCccccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCC
Q 047894 861 NVHVEIFPRLHKLSIVECPKLSGELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKS 940 (1087)
Q Consensus 861 ~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~ 940 (1087)
.....+++|++|++++| .+.+..|. .+..+++|++|++++|.+.+.
T Consensus 139 -~~~~~~~~L~~L~Ls~n-~l~~~~~~--------------------------------~~~~l~~L~~L~Ls~N~l~~~ 184 (310)
T 4glp_A 139 -LQQWLKPGLKVLSIAQA-HSPAFSCE--------------------------------QVRAFPALTSLDLSDNPGLGE 184 (310)
T ss_dssp -HHTTBCSCCCEEEEECC-SSCCCCTT--------------------------------SCCCCTTCCEEECCSCTTCHH
T ss_pred -HHhhhccCCCEEEeeCC-CcchhhHH--------------------------------HhccCCCCCEEECCCCCCccc
Confidence 00123677778888777 45422222 122334555555555554321
Q ss_pred --Cc-hhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCC---CCccEEE
Q 047894 941 --LP-EEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSP---VMLQLLR 1014 (1087)
Q Consensus 941 --~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l---~~L~~L~ 1014 (1087)
++ ......+++|++|++++|. ++.++.. +.. .+.++++|++|++++|++++..|..+..+ ++|++|+
T Consensus 185 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~--~~~----l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 185 RGLMAALCPHKFPAIQNLALRNTG-METPTGV--CAA----LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp HHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHH--HHH----HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred hhhhHHHhhhcCCCCCEEECCCCC-CCchHHH--HHH----HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence 11 1112345666666666654 2222210 000 02345666667777777766656555444 6788888
Q ss_pred EeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCcCeEEEccCCC
Q 047894 1015 IENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTISAVYICECDK 1067 (1087)
Q Consensus 1015 l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~ 1067 (1087)
+++|.+. .+|..+. ++|++|++++ +.++.+|....+++|+.|++++|+.
T Consensus 258 Ls~N~l~-~lp~~~~--~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 258 LSFAGLE-QVPKGLP--AKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSSCCC-SCCSCCC--SCCSCEECCS-CCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred CCCCCCC-chhhhhc--CCCCEEECCC-CcCCCCchhhhCCCccEEECcCCCC
Confidence 8888776 5666553 7888888887 4577666645557788888887764
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=2e-12 Score=141.45 Aligned_cols=203 Identities=16% Similarity=0.125 Sum_probs=139.1
Q ss_pred CCcccEEEecCCCCc-ccCccc--cCCccceeeccCCCcCccc-c----cccccCCCCcEEEecCCCCCcccCcccCCCC
Q 047894 577 FKRLRMLSLQGYCIG-ELPIPF--EELRLLRFLNLADIDIKSL-P----ESTCKLLNLEILILRNCSRLIKLPPKMRNLI 648 (1087)
Q Consensus 577 ~~~Lr~L~l~~~~i~-~lp~~i--~~l~~L~~L~L~~~~i~~l-p----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 648 (1087)
+++|+.|++++|.+. ..|..+ +.+.+|++|++++|.++.. | ..+..+++|++|++++|......|..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 456999999999985 457777 8999999999999998842 2 3456899999999999885455567789999
Q ss_pred CcCEEeecCCccccc--cC--ccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhcc
Q 047894 649 NLNHLDIRGAKLLKE--MP--CGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALC 724 (1087)
Q Consensus 649 ~L~~L~l~~~~~~~~--~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 724 (1087)
+|++|++++|..... ++ ..++++++|++|....+.. ..........+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l----------------------------~~l~~~~~~l~~ 221 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM----------------------------ETPTGVCAALAA 221 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC----------------------------CCHHHHHHHHHH
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC----------------------------CchHHHHHHHHh
Confidence 999999999973321 32 2246778888886432211 111222222345
Q ss_pred CCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCCCCCCC
Q 047894 725 EKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCVSLPSL 804 (1087)
Q Consensus 725 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l 804 (1087)
.+.+|++|+++++...... ...+..+..+++|+.|.++++....+|.++ +++|+.|++++|.+.. +|.+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~------p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~-~~~~ 290 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATV------NPSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNR-APQP 290 (310)
T ss_dssp HTCCCSSEECTTSCCCCCC------CSCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCS-CCCT
T ss_pred cCCCCCEEECCCCCCCccc------hhhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCC-Cchh
Confidence 6678899998876543321 011222333467888888887777777665 3678888888887653 3556
Q ss_pred CCcCCcceeeccCC
Q 047894 805 GRLSSLKHLAVKGL 818 (1087)
Q Consensus 805 ~~l~~L~~L~L~~~ 818 (1087)
..+++|+.|+++++
T Consensus 291 ~~l~~L~~L~L~~N 304 (310)
T 4glp_A 291 DELPEVDNLTLDGN 304 (310)
T ss_dssp TSCCCCSCEECSST
T ss_pred hhCCCccEEECcCC
Confidence 77788888877765
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.37 E-value=4e-12 Score=136.05 Aligned_cols=180 Identities=13% Similarity=0.157 Sum_probs=137.1
Q ss_pred cccCCcccEEEEecCCCccccCC--CCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCC
Q 047894 864 VEIFPRLHKLSIVECPKLSGELP--ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSL 941 (1087)
Q Consensus 864 ~~~~~~L~~L~l~~c~~l~~~~p--~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 941 (1087)
...+++|+.|.+.+| .++ .++ ..+++|++|++++|.-. . +..+..+++|++|++++|.+.. +
T Consensus 37 ~~~l~~L~~L~l~~~-~i~-~~~~l~~l~~L~~L~l~~n~l~-----------~--~~~l~~l~~L~~L~L~~n~l~~-~ 100 (272)
T 3rfs_A 37 QNELNSIDQIIANNS-DIK-SVQGIQYLPNVRYLALGGNKLH-----------D--ISALKELTNLTYLILTGNQLQS-L 100 (272)
T ss_dssp HHHHTTCCEEECTTS-CCC-CCTTGGGCTTCCEEECTTSCCC-----------C--CGGGTTCTTCCEEECTTSCCCC-C
T ss_pred cccccceeeeeeCCC-Ccc-cccccccCCCCcEEECCCCCCC-----------C--chhhcCCCCCCEEECCCCccCc-c
Confidence 345789999999988 555 343 46889999999987421 1 2356678899999999998664 4
Q ss_pred chhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCC
Q 047894 942 PEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKL 1021 (1087)
Q Consensus 942 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~ 1021 (1087)
+...+..+++|++|++++|.. +.++.. .+.++++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l-~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQL-QSLPDG---------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCC-CCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ChhHhcCCcCCCEEECCCCcC-CccCHH---------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 444456899999999999873 322211 2456788999999999999877777889999999999999888
Q ss_pred cccCCCCCCCCCccEEEEecCCCCcccCCC--CCCCCcCeEEEccCCCCCC
Q 047894 1022 ESIPDGLPNLKCLQSICIRKCPSLVSFPER--GLPNTISAVYICECDKLEA 1070 (1087)
Q Consensus 1022 ~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~~l~~ 1070 (1087)
...+..+..+++|++|++++| .++.++.. +..++|+.|++++|+....
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 666667889999999999995 57777764 3457999999999875443
No 95
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.36 E-value=1.9e-12 Score=115.39 Aligned_cols=58 Identities=26% Similarity=0.467 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--ccCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 047894 25 LLSFLKKWERKLKMIQAVLNDAEEK--QLTDEAVKMWLDDLQDLAYDAEDILDEFATQAL 82 (1087)
Q Consensus 25 ~~~~l~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~ed~ld~~~~~~~ 82 (1087)
+.+.+++|++||++|++||.||+.+ +..+++++.|+++|||+|||+|||||+|.++..
T Consensus 24 v~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 24 VKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344999999999999999999987 568999999999999999999999999999763
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.36 E-value=9.4e-13 Score=143.63 Aligned_cols=192 Identities=16% Similarity=0.207 Sum_probs=128.9
Q ss_pred CCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCC--CCCCCccEEEEeecCCccccCCCCCccc
Q 047894 837 FPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP--ELLPSLETLVVSKCGKLVVPLSCYPMLC 914 (1087)
Q Consensus 837 fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p--~~l~~L~~L~l~~~~~~~~~~~~~~~L~ 914 (1087)
+++|+.|.+.+.. +..+ . ....+++|+.|++++| .++ .++ ..+++|++|++++|.--
T Consensus 40 l~~L~~L~l~~~~-i~~l----~---~~~~l~~L~~L~L~~n-~i~-~~~~~~~l~~L~~L~L~~n~l~----------- 98 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTI----E---GVQYLNNLIGLELKDN-QIT-DLAPLKNLTKITELELSGNPLK----------- 98 (308)
T ss_dssp HHTCCEEECTTSC-CCCC----T---TGGGCTTCCEEECCSS-CCC-CCGGGTTCCSCCEEECCSCCCS-----------
T ss_pred cCCcCEEEeeCCC-ccCc----h---hhhccCCCCEEEccCC-cCC-CChhHccCCCCCEEEccCCcCC-----------
Confidence 6677777776642 1111 1 1234778888888887 555 233 45677888888876411
Q ss_pred EEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccC
Q 047894 915 RLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEG 994 (1087)
Q Consensus 915 ~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n 994 (1087)
. +..+..+++|++|++++|.+.. ++. +..+++|+.|++++|. +..++. +..+++|+.|++++|
T Consensus 99 ~--~~~~~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~-l~~~~~-----------l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 99 N--VSAIAGLQSIKTLDLTSTQITD-VTP--LAGLSNLQVLYLDLNQ-ITNISP-----------LAGLTNLQYLSIGNA 161 (308)
T ss_dssp C--CGGGTTCTTCCEEECTTSCCCC-CGG--GTTCTTCCEEECCSSC-CCCCGG-----------GGGCTTCCEEECCSS
T ss_pred C--chhhcCCCCCCEEECCCCCCCC-chh--hcCCCCCCEEECCCCc-cCcCcc-----------ccCCCCccEEEccCC
Confidence 1 1245667788888888888654 343 4678888888888876 232221 456677888888888
Q ss_pred CCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCcCeEEEccCCCCCCCC
Q 047894 995 DASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTISAVYICECDKLEAPP 1072 (1087)
Q Consensus 995 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~~~p 1072 (1087)
.+++..+ +..+++|++|++++|.+....+ +..+++|++|++++| .++.++.....++|+.|++++|+. ...|
T Consensus 162 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~i-~~~~ 233 (308)
T 1h6u_A 162 QVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQTI-TNQP 233 (308)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEEE-ECCC
T ss_pred cCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCee-ecCC
Confidence 7776443 7788888888888887764432 778888888888884 566666555567888888888763 4334
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=8.2e-12 Score=131.90 Aligned_cols=174 Identities=13% Similarity=0.145 Sum_probs=128.2
Q ss_pred cccEEEEecCCCccccCCCCC-CCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhc
Q 047894 869 RLHKLSIVECPKLSGELPELL-PSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMME 947 (1087)
Q Consensus 869 ~L~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 947 (1087)
..+.+++.++ .++ .+|..+ +.++.|++++|... .+....+.++++|++|++++|.+....+.. +.
T Consensus 15 ~~~~l~~~~~-~l~-~~p~~~~~~l~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~ 80 (251)
T 3m19_A 15 GKKEVDCQGK-SLD-SVPSGIPADTEKLDLQSTGLA-----------TLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FD 80 (251)
T ss_dssp GGTEEECTTC-CCS-SCCSCCCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TT
T ss_pred CCeEEecCCC-Ccc-ccCCCCCCCCCEEEccCCCcC-----------ccCHhHhcCcccCCEEECCCCcCCccCHhH-hc
Confidence 4566777666 565 566543 46888888876422 222234567789999999999876544443 46
Q ss_pred CCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCC
Q 047894 948 NNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDG 1027 (1087)
Q Consensus 948 ~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 1027 (1087)
.+++|+.|++++|.. +.++.. .+.++++|+.|++++|.+++..+..+..+++|++|++++|.+....+..
T Consensus 81 ~l~~L~~L~L~~n~l-~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 81 DLTELGTLGLANNQL-ASLPLG---------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp TCTTCCEEECTTSCC-CCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCcCCEEECCCCcc-cccChh---------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 899999999999873 333221 2346688899999999999877777888999999999999887665567
Q ss_pred CCCCCCccEEEEecCCCCcccCCCCC--CCCcCeEEEccCCC
Q 047894 1028 LPNLKCLQSICIRKCPSLVSFPERGL--PNTISAVYICECDK 1067 (1087)
Q Consensus 1028 l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~~ 1067 (1087)
+..+++|++|++++ +.++.+|...+ .++|+.|++++|+.
T Consensus 151 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 151 FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 88999999999998 56778876433 46899999998874
No 98
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=2.2e-11 Score=137.96 Aligned_cols=296 Identities=17% Similarity=0.040 Sum_probs=178.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc----cC-CCeEEEEEeCCcc-cHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD----SK-FDVKAWVCVSDVF-DVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~----~~-f~~~~wv~~s~~~-~~~ 239 (1087)
..++||+++++++.+++...... ...+.+.|+|++|+|||++|+.+++...... .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN--EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT--CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 67999999999999888652111 2345899999999999999999998642210 01 3456788877666 778
Q ss_pred HHHHHHHHHhhcCCC--CcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHh-hcccccCCCCcEEEEEcCCcccc
Q 047894 240 GISKALLESITSAAS--DLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDL-KAPFLAAEPNSKMIVTTRNSNVA 316 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~~s~ilvTtr~~~v~ 316 (1087)
.++..++..+..... ...........+.+.+..++.+|||||++.-....+... ...+.....+..||+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888888888743221 122345566677777777666999999954321111111 22222111678899999875321
Q ss_pred c----cc--CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhC---Cchh-HHHHHHhh--hc---
Q 047894 317 S----TM--GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCG---GLAL-AAKTLGGL--LR--- 381 (1087)
Q Consensus 317 ~----~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~PL-ai~~~~~~--l~--- 381 (1087)
. .. .....+.+++++.++..+++...+..... ......+....|++.++ |.|. |+..+-.. ++
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI--KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSC--TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcc--cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 1 11 11137999999999999999987531110 01112345567888887 9887 33333222 21
Q ss_pred CC-CHHHHHHHHhhhccCCCCCCChHHHHHhhhcCCchhhHHHHHHHccCCCCcccChhhhHHHhHhCCCcccCCchhhH
Q 047894 382 TT-RHDAWDDILESKIWDLPRQSGVLPVLRLSYHHLPSHLKRCLAYCAIFPKDYEFNEKEVTFLWMAGGIIRQSRSKERL 460 (1087)
Q Consensus 382 ~~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~ 460 (1087)
.. +.+++..++.... ...+..+++.|+++.+..+..++....+-.+. +.....--..| +.. . .
T Consensus 256 ~~i~~~~v~~~~~~~~---------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~----~-~ 319 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYE---------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP----L-S 319 (384)
T ss_dssp SCCCHHHHHHHHHHHH---------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC----C-C
T ss_pred CccCHHHHHHHHHHHh---------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC----C-C
Confidence 12 6777777766421 23466778899988887777666511101111 11111111122 111 1 1
Q ss_pred HHHHHHHHHHHhhCCCCcccc
Q 047894 461 EDWGSKCFHDLVSRSIFQQTA 481 (1087)
Q Consensus 461 e~~~~~~~~~L~~~~l~~~~~ 481 (1087)
......++..|...++++...
T Consensus 320 ~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEe
Confidence 234568899999999998754
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=7.3e-13 Score=134.10 Aligned_cols=102 Identities=18% Similarity=0.111 Sum_probs=50.6
Q ss_pred ccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCcCeEEE
Q 047894 983 CEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTISAVYI 1062 (1087)
Q Consensus 983 c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i 1062 (1087)
+++|+.|++++|.+++..+..+..+++|++|++++|.+....|..+..+++|++|++++|..++.+|.....++|+.|++
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l 166 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNI 166 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEEC
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEEC
Confidence 34444444444444444444455555555555555555444444455555555555555444555543333345555555
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEe
Q 047894 1063 CECDKLEAPPNDMHKLNSLQSLSI 1086 (1087)
Q Consensus 1063 ~~c~~l~~~p~~l~~l~~L~~l~i 1086 (1087)
++|. ++.++ .+..+++|+.|++
T Consensus 167 ~~n~-i~~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 167 QFDG-VHDYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TTBC-CCCCT-TGGGCSSCCEEEE
T ss_pred CCCC-CcChH-HhccCCCCCEEEe
Confidence 5554 23333 3455555555554
No 100
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=9.9e-11 Score=132.94 Aligned_cols=297 Identities=13% Similarity=0.042 Sum_probs=184.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++||+.+++++.+++.....+..+..+.+.|+|++|+||||+|+.+++...... -...+|++++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCccCCCHHHHHHHH
Confidence 57999999999999988753111102234789999999999999999988653210 1346778877777788888888
Q ss_pred HHHhhcCCCC-cccHHHHHHHHHHhh--CCCceEEEEecCCCCCHhhHHHhhcccccC-C---CCcEEEEEcCCcccccc
Q 047894 246 LESITSAASD-LKTLNEVQVQLKKAV--DGKRFLLVLDDVWNEDYSLWVDLKAPFLAA-E---PNSKMIVTTRNSNVAST 318 (1087)
Q Consensus 246 ~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~---~~s~ilvTtr~~~v~~~ 318 (1087)
+..++..... .....++...+...+ .+++.+||||+++.-+......+...+... . .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 8888654321 234555555555555 366889999999776555555554444221 1 46778888776533222
Q ss_pred cC-------CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHh---------CCchhHHHHHHhhhc-
Q 047894 319 MG-------PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKC---------GGLALAAKTLGGLLR- 381 (1087)
Q Consensus 319 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~g~PLai~~~~~~l~- 381 (1087)
.. ....+.+++++.++..+++...+..... ......+....|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 11 1136999999999999999887632110 0122345677899999 788765544433211
Q ss_pred -----CC---CHHHHHHHHhhhccCCCCCCChHHHHHhhhcCCchhhHHHHHHHccCC---CCcccChhhhHHHhHh---
Q 047894 382 -----TT---RHDAWDDILESKIWDLPRQSGVLPVLRLSYHHLPSHLKRCLAYCAIFP---KDYEFNEKEVTFLWMA--- 447 (1087)
Q Consensus 382 -----~~---~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~w~a--- 447 (1087)
.. +.+....+...... .. +.-.++.||.+.+.++..++.+. .+..+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~-----~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLF-----GI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSC-----CC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhh-----hh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 11 44444444433211 11 23335678888888887777654 2224555555554432
Q ss_pred -CCCcccCCchhhHHHHHHHHHHHHhhCCCCcccc
Q 047894 448 -GGIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTA 481 (1087)
Q Consensus 448 -eg~i~~~~~~~~~e~~~~~~~~~L~~~~l~~~~~ 481 (1087)
.|... -+ ......++++|...+++....
T Consensus 324 ~~~~~~--~~----~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 324 EYGERP--RV----HSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HTTCCC--CC----HHHHHHHHHHHHHTTSSEEEE
T ss_pred HcCCCC--CC----HHHHHHHHHHHHhCCCeEEee
Confidence 22111 01 233568899999999998765
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=6.1e-12 Score=135.84 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=77.1
Q ss_pred CCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEe
Q 047894 575 PKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLD 654 (1087)
Q Consensus 575 ~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 654 (1087)
..+++|+.|++++|.+..+| .++.+.+|++|++++|.++.+|. +.++++|++|++++|. +..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEE
Confidence 35677888899888888875 48888889999999988888877 8888899999998876 566665 88888999999
Q ss_pred ecCCccccccCccCCCCCCCCccCe
Q 047894 655 IRGAKLLKEMPCGMKELKKLRTLSN 679 (1087)
Q Consensus 655 l~~~~~~~~~p~~i~~L~~L~~L~~ 679 (1087)
+++|. +..+ ..+..+++|+.|+.
T Consensus 119 L~~n~-i~~~-~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 119 LEHNG-ISDI-NGLVHLPQLESLYL 141 (291)
T ss_dssp CTTSC-CCCC-GGGGGCTTCCEEEC
T ss_pred CCCCc-CCCC-hhhcCCCCCCEEEc
Confidence 88887 5544 34666666666643
No 102
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.30 E-value=9.9e-11 Score=132.85 Aligned_cols=296 Identities=14% Similarity=0.036 Sum_probs=178.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++||+.+++++.+++...-.. .....+.|+|++|+||||+|+.+++...... +.-...+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG--EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS--CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 67999999999999988543111 2345789999999999999999988653210 012345788888777888889
Q ss_pred HHHHHHhhcCCCC-cccHHHHHHHHHHhh--CCCceEEEEecCCCCCHh--hHHHhhcccc--cC---CCCcEEEEEcCC
Q 047894 243 KALLESITSAASD-LKTLNEVQVQLKKAV--DGKRFLLVLDDVWNEDYS--LWVDLKAPFL--AA---EPNSKMIVTTRN 312 (1087)
Q Consensus 243 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l~~~l~--~~---~~~s~ilvTtr~ 312 (1087)
..++..++..... .....++...+.+.+ .+++.+|||||++.-... ....+...+. .. ..+..+|+||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 9999988654332 233556566666666 356889999999653211 1122221111 11 346678888876
Q ss_pred ccccccc-----CCC--ceeeCCCCChHhHHHHHHHhhcCC-CCCCcchhhHHHHHHHHHHhC---CchhHHH-HHHhhh
Q 047894 313 SNVASTM-----GPI--EHYNLKSLSDDDCWSIFIKHVFES-RDLNAHQISESFRKKVVAKCG---GLALAAK-TLGGLL 380 (1087)
Q Consensus 313 ~~v~~~~-----~~~--~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---g~PLai~-~~~~~l 380 (1087)
......+ ... ..+.+++++.++..+++...+... ... ....++...|++.++ |.|..+. .+....
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG---VLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT---TBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC---CCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5322111 111 478999999999999998875321 111 111234567888888 9995333 222221
Q ss_pred --c-----CC-CHHHHHHHHhhhccCCCCCCChHHHHHhhhcCCchhhHHHHHHHc-cCCCCcccChhhhHHHhH----h
Q 047894 381 --R-----TT-RHDAWDDILESKIWDLPRQSGVLPVLRLSYHHLPSHLKRCLAYCA-IFPKDYEFNEKEVTFLWM----A 447 (1087)
Q Consensus 381 --~-----~~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~w~----a 447 (1087)
+ .. +.+.+..++... ....+.-++..||++.+..+...+ ++.....+....+.+... .
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEI---------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTST 324 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHH---------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 1 12 566676665542 123456678899998887776665 443222344443333321 1
Q ss_pred CCCcccCCchhhHHHHHHHHHHHHhhCCCCcccc
Q 047894 448 GGIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTA 481 (1087)
Q Consensus 448 eg~i~~~~~~~~~e~~~~~~~~~L~~~~l~~~~~ 481 (1087)
.| +.. .....+..++++|...|+++...
T Consensus 325 ~~-~~~-----~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 325 LG-LEH-----VTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp TT-CCC-----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cC-CCC-----CCHHHHHHHHHHHHhCCCeEEEe
Confidence 22 111 11345678899999999998753
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.27 E-value=3e-11 Score=134.51 Aligned_cols=197 Identities=16% Similarity=0.180 Sum_probs=131.1
Q ss_pred ccccCCcccEEEEecCCCccccCC----CCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCC
Q 047894 863 HVEIFPRLHKLSIVECPKLSGELP----ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTAL 938 (1087)
Q Consensus 863 ~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~ 938 (1087)
|...++++++|+++++ +++ .+| .++++|++|++++|... +.+....+.+++++.++.+.++..+
T Consensus 25 P~~l~~~l~~L~Ls~N-~i~-~i~~~~f~~l~~L~~L~Ls~N~i~----------~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 25 PSDLPRNAIELRFVLT-KLR-VIQKGAFSGFGDLEKIEISQNDVL----------EVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp CTTCCTTCSEEEEESC-CCS-EECTTSSTTCTTCCEEEEECCTTC----------CEECTTSBCSCTTCCEEEEEEETTC
T ss_pred CcCcCCCCCEEEccCC-cCC-CcCHHHHcCCCCCCEEECcCCCCC----------CccChhHhhcchhhhhhhcccCCcc
Confidence 4445678999999988 776 444 35788999999988532 2233345667777776544443334
Q ss_pred CCCchhhhcCCCCCceEEeccCCCCcccccCCCCC--CCCEEEEecccCccccccccCCCCCCCCCCCCCC-CCccEEEE
Q 047894 939 KSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPA--SLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSP-VMLQLLRI 1015 (1087)
Q Consensus 939 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~--~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l-~~L~~L~l 1015 (1087)
..++...+..+++|+.|++++|. +..++...... .+..|.+.++.++..+ .+..|..+ ..|+.|++
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l----------~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTI----------ERNSFVGLSFESVILWL 161 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEE----------CTTSSTTSBSSCEEEEC
T ss_pred cccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccc----------cccchhhcchhhhhhcc
Confidence 55554445789999999999876 34444322222 2334444444444333 33445454 46899999
Q ss_pred eccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCC--CCCcCeEEEccCCCCCCCCC-CCCCCCCCCcE
Q 047894 1016 ENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGL--PNTISAVYICECDKLEAPPN-DMHKLNSLQSL 1084 (1087)
Q Consensus 1016 ~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~~l~~~p~-~l~~l~~L~~l 1084 (1087)
++|.+. .+|......++|++|++++|+.++.+|.+.+ .++|+.|++++|. ++.+|. .+.++..|+.+
T Consensus 162 ~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 162 NKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp CSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECT
T ss_pred cccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhc
Confidence 999886 6666666778999999999999999998654 4799999999985 666765 45555555443
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=2.5e-13 Score=154.08 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=62.6
Q ss_pred cccCCCCcccEEEecCCCCcc-----cCccccCCccceeeccCCCcCc----cccccc-------ccCCCCcEEEecCCC
Q 047894 572 DLLPKFKRLRMLSLQGYCIGE-----LPIPFEELRLLRFLNLADIDIK----SLPEST-------CKLLNLEILILRNCS 635 (1087)
Q Consensus 572 ~~~~~~~~Lr~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~~~ 635 (1087)
..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 345667778888888887654 3345677888888888887554 334443 677888888888876
Q ss_pred CCc----ccCcccCCCCCcCEEeecCCc
Q 047894 636 RLI----KLPPKMRNLINLNHLDIRGAK 659 (1087)
Q Consensus 636 ~l~----~lp~~i~~L~~L~~L~l~~~~ 659 (1087)
... .+|..+.++++|++|++++|.
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 433 367777788888888888887
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=1.7e-12 Score=144.20 Aligned_cols=203 Identities=20% Similarity=0.186 Sum_probs=137.8
Q ss_pred CCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcc--cCccccCCccceeeccCCCcCc-cccccccc
Q 047894 546 EHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGE--LPIPFEELRLLRFLNLADIDIK-SLPESTCK 622 (1087)
Q Consensus 546 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~ 622 (1087)
.+++.+...++... ...+. +.++++|++|++++|.+.. +|..+..+++|++|++++|.++ ..|..++.
T Consensus 70 ~~l~~L~l~~n~l~--------~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRCPRSFMD--------QPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEECTTCEEC--------SCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ccceEEEcCCcccc--------ccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 67888876544321 11122 4578999999999999854 7888999999999999999988 67888999
Q ss_pred CCCCcEEEecCCCCCc--ccCcccCCCCCcCEEeecCCccccc--cCccCCCCC-CCCccCeeeeCccCCCCCccccccc
Q 047894 623 LLNLEILILRNCSRLI--KLPPKMRNLINLNHLDIRGAKLLKE--MPCGMKELK-KLRTLSNFIVGKRETASGLEDLKCL 697 (1087)
Q Consensus 623 L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~--~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~L~~L 697 (1087)
+++|++|++++|..+. .+|..+.++++|++|++++|..+.. ++..+.+++ +|++|+...+..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~------------- 207 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK------------- 207 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG-------------
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc-------------
Confidence 9999999999996565 3777788999999999999932443 455567777 888875432210
Q ss_pred cccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCC
Q 047894 698 NFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL 777 (1087)
Q Consensus 698 ~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~ 777 (1087)
.. ........+..+++|+.|+++++....+ ..+.
T Consensus 208 -------------~~--~~~~l~~~~~~~~~L~~L~l~~~~~l~~-------------------------------~~~~ 241 (336)
T 2ast_B 208 -------------NL--QKSDLSTLVRRCPNLVHLDLSDSVMLKN-------------------------------DCFQ 241 (336)
T ss_dssp -------------GS--CHHHHHHHHHHCTTCSEEECTTCTTCCG-------------------------------GGGG
T ss_pred -------------cC--CHHHHHHHHhhCCCCCEEeCCCCCcCCH-------------------------------HHHH
Confidence 00 0123344556678899998876542111 1112
Q ss_pred CcCCcccCcccEEeeeCCCCCC--CCCCCCCcCCcceeeccCC
Q 047894 778 WIGDPLFCKIELLELENCDNCV--SLPSLGRLSSLKHLAVKGL 818 (1087)
Q Consensus 778 ~~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~ 818 (1087)
.+.. +++|+.|++++|.... .+..++++++|+.|++++|
T Consensus 242 ~l~~--l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 242 EFFQ--LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGG--CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHhC--CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 2222 5677777777775211 2224667778888877766
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.25 E-value=2.7e-13 Score=153.69 Aligned_cols=244 Identities=16% Similarity=0.125 Sum_probs=142.6
Q ss_pred cccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcc----cCccc-------cCCccceeecc
Q 047894 540 EVFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGE----LPIPF-------EELRLLRFLNL 608 (1087)
Q Consensus 540 ~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~----lp~~i-------~~l~~L~~L~L 608 (1087)
..+..+++|+.|.+.++... ......+...+.++++|++|+|++|.+.. +|..+ ..+++|++|+|
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~----~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIG----TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HHHHHCSCCCEEECTTSEEC----HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHhcCCCccEEECCCCCCC----HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34556788888877654321 11112234457889999999999986653 34444 78899999999
Q ss_pred CCCcCcc-----cccccccCCCCcEEEecCCCCCc----ccCcccCCC---------CCcCEEeecCCccc-cccC---c
Q 047894 609 ADIDIKS-----LPESTCKLLNLEILILRNCSRLI----KLPPKMRNL---------INLNHLDIRGAKLL-KEMP---C 666 (1087)
Q Consensus 609 ~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~L---------~~L~~L~l~~~~~~-~~~p---~ 666 (1087)
++|.+.. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|... ..+| .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999886 78889999999999999987422 233334445 89999999999732 2333 3
Q ss_pred cCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeCCCCCCcch
Q 047894 667 GMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVSQFGNSRDV 746 (1087)
Q Consensus 667 ~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 746 (1087)
.+.++++|++|....+.... ..........+..+++|+.|+++++...+
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~--------------------------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----- 230 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRP--------------------------EGIEHLLLEGLAYCQELKVLDLQDNTFTH----- 230 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCH--------------------------HHHHHHHHTTGGGCTTCCEEECCSSCCHH-----
T ss_pred HHHhCCCcCEEECcCCCCCH--------------------------hHHHHHHHHHhhcCCCccEEECcCCCCCc-----
Confidence 45566677776543221100 00011122255666777777776554210
Q ss_pred hhHHHhhhccCCCCCcccEEEeccCCCC-----CCCCcCCcccCcccEEeeeCCCCCC----CCC-CC-CCcCCcceeec
Q 047894 747 AVEEHVLDILQPHKCIKKVAIRNYGGAR-----FPLWIGDPLFCKIELLELENCDNCV----SLP-SL-GRLSSLKHLAV 815 (1087)
Q Consensus 747 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~----~l~-~l-~~l~~L~~L~L 815 (1087)
.........+...++|+.|.++++.... +|.++....+++|+.|+|++|.+.. .+| .+ .++++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 0011122334445556666665554332 1222211114566666666666544 233 23 34566666666
Q ss_pred cCC
Q 047894 816 KGL 818 (1087)
Q Consensus 816 ~~~ 818 (1087)
+++
T Consensus 311 ~~N 313 (386)
T 2ca6_A 311 NGN 313 (386)
T ss_dssp TTS
T ss_pred cCC
Confidence 654
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=1.3e-11 Score=126.16 Aligned_cols=142 Identities=16% Similarity=0.115 Sum_probs=103.9
Q ss_pred CCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCC
Q 047894 921 CKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSS 1000 (1087)
Q Consensus 921 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~ 1000 (1087)
+..+++|++|++++|.+. .++...+..+++|++|++++|. ++.++.. .+.++++|+.|++++|++++..
T Consensus 48 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~ 116 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ-LQSLPNG---------VFDKLTQLKELALNTNQLQSLP 116 (208)
T ss_dssp TTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSSCCCCCC
T ss_pred hcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCc-CCccCHh---------HhcCccCCCEEEcCCCcCcccC
Confidence 456678888888888765 4454445678889999998876 3333221 1345678888888888888877
Q ss_pred CCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCcCeEEEccCCCCCCCCCCCCCCC
Q 047894 1001 PSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTISAVYICECDKLEAPPNDMHKLN 1079 (1087)
Q Consensus 1001 ~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~~~p~~l~~l~ 1079 (1087)
+..+..+++|++|++++|.+....+..+..+++|++|++++|+... .+++|+.|.++.|.....+|+.+..++
T Consensus 117 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 7778888999999999998876555568889999999999875433 234788888888777667777666654
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=2.8e-11 Score=127.82 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=116.7
Q ss_pred ccCCcccEEEEecCCCccccCC---CCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCC
Q 047894 865 EIFPRLHKLSIVECPKLSGELP---ELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSL 941 (1087)
Q Consensus 865 ~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 941 (1087)
+..+.++.|++.++ .+.+..+ ..+++|++|++++|.- +.+....+.++++|++|++++|.+.. +
T Consensus 32 ~~~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-----------~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 98 (251)
T 3m19_A 32 GIPADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQL-----------QTLSAGVFDDLTELGTLGLANNQLAS-L 98 (251)
T ss_dssp CCCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCC-----------CCCCTTTTTTCTTCCEEECTTSCCCC-C
T ss_pred CCCCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcC-----------CccCHhHhccCCcCCEEECCCCcccc-c
Confidence 33467888888887 5553333 3467888888887632 22222345677899999999998664 4
Q ss_pred chhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCC
Q 047894 942 PEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKL 1021 (1087)
Q Consensus 942 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~ 1021 (1087)
+...+..+++|+.|++++|. ++.++.. .+.++++|+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQ-LKSLPSG---------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ChhHhcccCCCCEEEcCCCc-CCCcChh---------HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 44445789999999999985 4433321 1345788899999999999877778899999999999999988
Q ss_pred cccCCCCCCCCCccEEEEecCCC
Q 047894 1022 ESIPDGLPNLKCLQSICIRKCPS 1044 (1087)
Q Consensus 1022 ~~~p~~l~~l~~L~~L~l~~c~~ 1044 (1087)
...+..+..+++|+.|++++|+.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCHHHHhCCCCCCEEEeeCCce
Confidence 76667889999999999999653
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=1.5e-11 Score=145.81 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEe
Q 047894 575 PKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLD 654 (1087)
Q Consensus 575 ~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 654 (1087)
..+..|+.|++++|.+..+| .++.+.+|++|+|++|.+..+|. +..+++|++|+|++|. +..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 45667888888888887776 57888888888888888887776 8888888888888875 56666 588888888888
Q ss_pred ecCCccccccCccCCCCCCCCccCe
Q 047894 655 IRGAKLLKEMPCGMKELKKLRTLSN 679 (1087)
Q Consensus 655 l~~~~~~~~~p~~i~~L~~L~~L~~ 679 (1087)
+++|. +..++ .+..|++|+.|..
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESLYL 138 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEEEC
T ss_pred ecCCC-CCCCc-cccCCCccCEEEC
Confidence 88887 55443 4667777777654
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=5.6e-11 Score=139.11 Aligned_cols=91 Identities=20% Similarity=0.330 Sum_probs=38.4
Q ss_pred cCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCc------
Q 047894 984 EKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTI------ 1057 (1087)
Q Consensus 984 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL------ 1057 (1087)
++|+.|++++|.+++ +|. .+++|++|++++|.+.. +|. +. ++|+.|++++ +.++.+|. ++.+|
T Consensus 140 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~~L~~~~~~ 208 (571)
T 3cvr_A 140 ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST-NLLESLPA--VPVRNHHSEET 208 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS-SCCSSCCC--CC--------C
T ss_pred ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC-CCCCchhh--HHHhhhccccc
Confidence 344444444444444 222 33444555555544432 333 32 4455555544 23444444 33344
Q ss_pred -CeEEEccCCCCCCCCCCCCCCCCCCcEEe
Q 047894 1058 -SAVYICECDKLEAPPNDMHKLNSLQSLSI 1086 (1087)
Q Consensus 1058 -~~L~i~~c~~l~~~p~~l~~l~~L~~l~i 1086 (1087)
+.|++++|. ++.+|..+..+++|+.|++
T Consensus 209 L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 209 EIFFRCRENR-ITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp CEEEECCSSC-CCCCCGGGGGSCTTEEEEC
T ss_pred ceEEecCCCc-ceecCHHHhcCCCCCEEEe
Confidence 445554442 3334444444444444444
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.21 E-value=2.4e-11 Score=122.90 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=69.3
Q ss_pred CCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEee
Q 047894 576 KFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDI 655 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 655 (1087)
.+++|+.|++++|.+..+| .+..+.+|++|++++|.++.++ .+..+++|++|++++|......|..+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4566778888888877777 6777888888888888766654 5777888888888877644446777777888888888
Q ss_pred cCCccccccCccCCCCCCCCcc
Q 047894 656 RGAKLLKEMPCGMKELKKLRTL 677 (1087)
Q Consensus 656 ~~~~~~~~~p~~i~~L~~L~~L 677 (1087)
++|......|..++++++|+.|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEE
T ss_pred cCCccCcHhHHHHhhCCCCCEE
Confidence 7776332344445555555544
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.20 E-value=9.7e-12 Score=134.24 Aligned_cols=125 Identities=16% Similarity=0.237 Sum_probs=60.8
Q ss_pred CCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCC
Q 047894 922 KELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSP 1001 (1087)
Q Consensus 922 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~ 1001 (1087)
..+++|++|++++|.+.. ++. +..+++|+.|++++|. +..++ .+..+++|+.|++++|.+++.
T Consensus 87 ~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~n~-i~~~~-----------~l~~l~~L~~L~l~~n~l~~~-- 149 (291)
T 1h6t_A 87 ANLKNLGWLFLDENKVKD-LSS--LKDLKKLKSLSLEHNG-ISDIN-----------GLVHLPQLESLYLGNNKITDI-- 149 (291)
T ss_dssp TTCTTCCEEECCSSCCCC-GGG--GTTCTTCCEEECTTSC-CCCCG-----------GGGGCTTCCEEECCSSCCCCC--
T ss_pred ccCCCCCEEECCCCcCCC-Chh--hccCCCCCEEECCCCc-CCCCh-----------hhcCCCCCCEEEccCCcCCcc--
Confidence 344455555555555332 222 2345555555555553 22111 133444555555555555443
Q ss_pred CCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCCCCCcCeEEEccCC
Q 047894 1002 SSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGLPNTISAVYICECD 1066 (1087)
Q Consensus 1002 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~ 1066 (1087)
..+..+++|++|++++|.+....| +..+++|+.|++++| .++.+|.....++|+.|++++|+
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 334455555555555555543322 555555555555553 45555443334455555555554
No 113
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=3.2e-10 Score=119.65 Aligned_cols=198 Identities=13% Similarity=0.125 Sum_probs=120.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++||+.+++.+.+++..... ...+.|+|++|+||||+|+.+++...... .+.. .......+. ..+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~-----~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~---~~~~~~~~~----~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA---TPCGVCDNC----REI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCC-----CSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCS---SCCSCSHHH----HHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCC---CCCcccHHH----HHH
Confidence 4699999999999999976432 24789999999999999999987643211 1100 000000000 000
Q ss_pred HHHh-----hcCCCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccc
Q 047894 246 LESI-----TSAASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA 316 (1087)
Q Consensus 246 ~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~ 316 (1087)
.... ..........+.....+... ..+++.+||+||++.-+...+..+...+.....+..+|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000 00000011112222222211 23568999999997766666777766665555678888888764322
Q ss_pred -cc-cCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhh
Q 047894 317 -ST-MGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLL 380 (1087)
Q Consensus 317 -~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 380 (1087)
.. ......+.+++++.++..+++...+...... ...+....|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 1223579999999999999998877543211 223556789999999999988776543
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=1.4e-11 Score=146.18 Aligned_cols=166 Identities=22% Similarity=0.252 Sum_probs=98.1
Q ss_pred CCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCC-CCCCCccEEEEeecCCccccCCCCCcccE
Q 047894 837 FPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELP-ELLPSLETLVVSKCGKLVVPLSCYPMLCR 915 (1087)
Q Consensus 837 fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~~~~~~~~~~~L~~ 915 (1087)
++.|+.|.+.++. +........+++|+.|++++| .+.+..| ..+++|+.|++++|.-..
T Consensus 42 L~~L~~L~l~~n~--------i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~----------- 101 (605)
T 1m9s_A 42 LNSIDQIIANNSD--------IKSVQGIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKD----------- 101 (605)
T ss_dssp HTTCCCCBCTTCC--------CCCCTTGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCC-----------
T ss_pred CCCCCEEECcCCC--------CCCChHHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCCCCC-----------
Confidence 5566666665532 111111344677777777777 5552222 356677777777663111
Q ss_pred EEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCC
Q 047894 916 LEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGD 995 (1087)
Q Consensus 916 l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~ 995 (1087)
+..+..+++|+.|++++|.+.. ++. +..+++|+.|++++|. +..++ .+..|++|+.|++++|.
T Consensus 102 --l~~l~~l~~L~~L~Ls~N~l~~-l~~--l~~l~~L~~L~Ls~N~-l~~l~-----------~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 102 --LSSLKDLKKLKSLSLEHNGISD-ING--LVHLPQLESLYLGNNK-ITDIT-----------VLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp --CTTSTTCTTCCEEECTTSCCCC-CGG--GGGCTTCSEEECCSSC-CCCCG-----------GGGSCTTCSEEECCSSC
T ss_pred --ChhhccCCCCCEEEecCCCCCC-Ccc--ccCCCccCEEECCCCc-cCCch-----------hhcccCCCCEEECcCCc
Confidence 1234556677777777777543 332 3467777777777765 22221 24556677777777777
Q ss_pred CCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCC
Q 047894 996 ASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCP 1043 (1087)
Q Consensus 996 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~ 1043 (1087)
+.+..| +..+++|+.|+|++|.+.. +| .+..+++|+.|++++|+
T Consensus 165 l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 165 ISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEE
T ss_pred CCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCc
Confidence 766544 6667777777777776653 33 46677777777777643
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.18 E-value=1.4e-10 Score=135.86 Aligned_cols=175 Identities=17% Similarity=0.150 Sum_probs=114.2
Q ss_pred cccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCC
Q 047894 579 RLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGA 658 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 658 (1087)
+|++|+|++|.++.+|..+. .+|++|+|++|.|+.+| ..+++|++|++++|. +..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCC
Confidence 78888888888888887664 67888888888888888 457888888888875 566777 665 8888888888
Q ss_pred ccccccCccCCCCCCCCccCeeeeCccCCCCCccccccccccccceeecCcccCCChhhHHHHhccCCCCCCeeEEEeeC
Q 047894 659 KLLKEMPCGMKELKKLRTLSNFIVGKRETASGLEDLKCLNFLCDELCIAGLENVNNLQNAREAALCEKHNLEALTLDWVS 738 (1087)
Q Consensus 659 ~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 738 (1087)
. +..+|. .+++|+.|+...+.... + .. .+.+|+.|+++++.
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~N~l~~-------l------------------p~----------~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADNNQLTM-------L------------------PE----------LPTSLEVLSVRNNQ 171 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSSCCSC-------C------------------CC----------CCTTCCEEECCSSC
T ss_pred c-CCCCCC---cCccccEEeCCCCccCc-------C------------------CC----------cCCCcCEEECCCCC
Confidence 7 556765 56666666543221110 0 00 12456666666554
Q ss_pred CCCCCcchhhHHHhhhccCCCCCcccEEEeccCCCCCCCCcCCcccCcc-------cEEeeeCCCCCCCCC-CCCCcCCc
Q 047894 739 QFGNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFCKI-------ELLELENCDNCVSLP-SLGRLSSL 810 (1087)
Q Consensus 739 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~-~l~~l~~L 810 (1087)
...- ..+. ++|+.|.++++....+|. +.. +| +.|+|++|.+.. +| .+..+++|
T Consensus 172 L~~l-----------p~l~--~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L 232 (571)
T 3cvr_A 172 LTFL-----------PELP--ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRITH-IPENILSLDPT 232 (571)
T ss_dssp CSCC-----------CCCC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCC-CCGGGGGSCTT
T ss_pred CCCc-----------chhh--CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCccee-cCHHHhcCCCC
Confidence 3221 1111 567777777777666666 332 45 888888877653 45 46667888
Q ss_pred ceeeccCCCC
Q 047894 811 KHLAVKGLKK 820 (1087)
Q Consensus 811 ~~L~L~~~~~ 820 (1087)
+.|+|+++..
T Consensus 233 ~~L~L~~N~l 242 (571)
T 3cvr_A 233 CTIILEDNPL 242 (571)
T ss_dssp EEEECCSSSC
T ss_pred CEEEeeCCcC
Confidence 8888877643
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=1.8e-11 Score=129.75 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=42.6
Q ss_pred CcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecC
Q 047894 578 KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRG 657 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 657 (1087)
..+..++++++.++.++ .+..+.+|++|++++|.++.+| .+..+++|++|++++|. +..+|. +.++++|++|++++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence 34444555555555554 4555555555555555555555 45555555555555543 444444 55555555555555
Q ss_pred Cc
Q 047894 658 AK 659 (1087)
Q Consensus 658 ~~ 659 (1087)
|.
T Consensus 95 N~ 96 (263)
T 1xeu_A 95 NR 96 (263)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 117
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.17 E-value=1.4e-10 Score=131.47 Aligned_cols=297 Identities=17% Similarity=0.107 Sum_probs=171.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
+..++||+.+++.+.+++...... .....+.|+|++|+||||||+.+++........-...+|+.+....+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~--~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE--EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT--CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 367999999999999988642111 233578999999999999999999864321100235677877666666777777
Q ss_pred HHHHhhcCCC-CcccHHHHHHHHHHhhC--CCceEEEEecCCCCC----HhhHHHhhccccc-CCCCcEEEEEcCCcccc
Q 047894 245 LLESITSAAS-DLKTLNEVQVQLKKAVD--GKRFLLVLDDVWNED----YSLWVDLKAPFLA-AEPNSKMIVTTRNSNVA 316 (1087)
Q Consensus 245 i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~~s~ilvTtr~~~v~ 316 (1087)
++..++.... ......+....+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 7777654322 12234555555555553 458999999985421 1222333222211 23356778888765432
Q ss_pred cccC-----C--CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhC---CchhHHHHHHhhhc-----
Q 047894 317 STMG-----P--IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCG---GLALAAKTLGGLLR----- 381 (1087)
Q Consensus 317 ~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~PLai~~~~~~l~----- 381 (1087)
..+. . ...+.+++++.++..+++...+..... ......++...|++.++ |.|..+..+.....
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 2211 1 147999999999999999886531110 01123445667788877 99985443332211
Q ss_pred -C--C-CHHHHHHHHhhhccCCCCCCChHHHHHhhhcCCchhhHHHHHHHccCCC-C-cccChhhhHHHh--HhC--CCc
Q 047894 382 -T--T-RHDAWDDILESKIWDLPRQSGVLPVLRLSYHHLPSHLKRCLAYCAIFPK-D-YEFNEKEVTFLW--MAG--GII 451 (1087)
Q Consensus 382 -~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~li~~w--~ae--g~i 451 (1087)
. . +.+.+..+.... ....+.-.+..+|++.+..+..++..-+ + ..+....+.+.. +++ | +
T Consensus 255 ~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~ 324 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEI---------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-V 324 (386)
T ss_dssp TTCSSCCHHHHHHHHHHH---------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-C
T ss_pred cCCCccCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-C
Confidence 1 1 555666555532 1234566678899888877766663211 1 112232222211 111 2 1
Q ss_pred ccCCchhhHHHHHHHHHHHHhhCCCCccc
Q 047894 452 RQSRSKERLEDWGSKCFHDLVSRSIFQQT 480 (1087)
Q Consensus 452 ~~~~~~~~~e~~~~~~~~~L~~~~l~~~~ 480 (1087)
.. . .......+++.|...++++..
T Consensus 325 ~~-~----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 EA-V----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CC-C----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CC-C----CHHHHHHHHHHHHhCCCEEEE
Confidence 11 0 113356789999999999764
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=1.2e-10 Score=119.73 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=105.0
Q ss_pred EEEEecCCCccccCCCCC-CCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCC
Q 047894 872 KLSIVECPKLSGELPELL-PSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNS 950 (1087)
Q Consensus 872 ~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 950 (1087)
.+++.++ .++ .+|..+ ++|+.|++++|. ++.+....+..+++|++|++++|.+....|..+ ..++
T Consensus 15 ~v~c~~~-~l~-~iP~~l~~~l~~L~l~~n~-----------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~ 80 (220)
T 2v9t_B 15 IVDCRGK-GLT-EIPTNLPETITEIRLEQNT-----------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLR 80 (220)
T ss_dssp EEECTTS-CCS-SCCSSCCTTCCEEECCSSC-----------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTT-TTCS
T ss_pred EEEcCCC-CcC-cCCCccCcCCCEEECCCCc-----------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCc
Confidence 3444443 454 556543 467778777753 333333456677888888888888765555554 6788
Q ss_pred CCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCCCC
Q 047894 951 QLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGLPN 1030 (1087)
Q Consensus 951 ~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 1030 (1087)
+|+.|++++|. ++.++.. .+.++++|+.|++++|.+++..+..+..+++|++|++++|.+....+..+..
T Consensus 81 ~L~~L~Ls~N~-l~~l~~~---------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 81 SLNSLVLYGNK-ITELPKS---------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp SCCEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CCCEEECCCCc-CCccCHh---------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 89999998876 3333321 1345678888888888888888888888889999999999887666667888
Q ss_pred CCCccEEEEecCC
Q 047894 1031 LKCLQSICIRKCP 1043 (1087)
Q Consensus 1031 l~~L~~L~l~~c~ 1043 (1087)
+++|++|++++++
T Consensus 151 l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 151 LRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 8899999998865
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.15 E-value=1.3e-10 Score=119.52 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=105.9
Q ss_pred cEEEEecCCCccccCCCCCC-CccEEEEeecCCccccCCCCCcccEEE-eccCCCcCCccEEEeccCCCCCCCchhhhcC
Q 047894 871 HKLSIVECPKLSGELPELLP-SLETLVVSKCGKLVVPLSCYPMLCRLE-VDECKELANLRSLLICNSTALKSLPEEMMEN 948 (1087)
Q Consensus 871 ~~L~l~~c~~l~~~~p~~l~-~L~~L~l~~~~~~~~~~~~~~~L~~l~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 948 (1087)
+.++++++ .++ .+|..++ .+++|++++|. ++.+. ...+..+++|++|++++|.+....+.. +..
T Consensus 14 ~~l~~s~n-~l~-~iP~~~~~~~~~L~L~~N~-----------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-~~~ 79 (220)
T 2v70_A 14 TTVDCSNQ-KLN-KIPEHIPQYTAELRLNNNE-----------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-FEG 79 (220)
T ss_dssp TEEECCSS-CCS-SCCSCCCTTCSEEECCSSC-----------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTT-TTT
T ss_pred CEeEeCCC-Ccc-cCccCCCCCCCEEEcCCCc-----------CCccCchhhhccCCCCCEEECCCCcCCEECHHH-hCC
Confidence 35666655 555 5665443 56777777763 22331 123566778888888888865444333 467
Q ss_pred CCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCC
Q 047894 949 NSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGL 1028 (1087)
Q Consensus 949 l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l 1028 (1087)
+++|++|++++|.. +.++.. .+.++++|+.|++++|.+++..+..+..+++|++|++++|.+....|..+
T Consensus 80 l~~L~~L~Ls~N~l-~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 80 ASGVNEILLTSNRL-ENVQHK---------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CTTCCEEECCSSCC-CCCCGG---------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CCCCCEEECCCCcc-CccCHh---------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 88899999988763 322211 24567788888888888888888888888999999999998887778888
Q ss_pred CCCCCccEEEEecCC
Q 047894 1029 PNLKCLQSICIRKCP 1043 (1087)
Q Consensus 1029 ~~l~~L~~L~l~~c~ 1043 (1087)
..+++|++|++++++
T Consensus 150 ~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 150 DTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCTTCCEEECCSCC
T ss_pred cCCCCCCEEEecCcC
Confidence 889999999998865
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=9.2e-11 Score=115.19 Aligned_cols=128 Identities=22% Similarity=0.234 Sum_probs=97.0
Q ss_pred CCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcc-cccccccCC
Q 047894 546 EHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKS-LPESTCKLL 624 (1087)
Q Consensus 546 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~ 624 (1087)
++++.|.+.++.. ....++..+..+++|++|++++|.+..+ ..++.+.+|++|++++|.++. +|..+.+++
T Consensus 24 ~~L~~L~l~~n~l-------~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKS-------NDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBC-------BTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCC-------ChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 5566666544332 1012334467788899999999988877 778889999999999999887 777777899
Q ss_pred CCcEEEecCCCCCcccC--cccCCCCCcCEEeecCCccccccCc----cCCCCCCCCccCeeeeC
Q 047894 625 NLEILILRNCSRLIKLP--PKMRNLINLNHLDIRGAKLLKEMPC----GMKELKKLRTLSNFIVG 683 (1087)
Q Consensus 625 ~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 683 (1087)
+|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|+...+.
T Consensus 96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999999875 66665 678889999999999987 666665 67888888888766554
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=2.5e-10 Score=117.41 Aligned_cols=130 Identities=11% Similarity=0.100 Sum_probs=81.9
Q ss_pred CccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCC
Q 047894 926 NLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSS 1005 (1087)
Q Consensus 926 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~ 1005 (1087)
.+++|++++|.+....+...+..+++|+.|++++|. ++.++.. .+.++++|+.|++++|.+++..+..+.
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEG---------AFEGASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSSCCCCCCGGGGT
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHH---------HhCCCCCCCEEECCCCccCccCHhHhc
Confidence 456777777776544444434567777777777765 3322211 234556677777777777766666667
Q ss_pred CCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCC--CCCcCeEEEccCC
Q 047894 1006 SPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGL--PNTISAVYICECD 1066 (1087)
Q Consensus 1006 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~ 1066 (1087)
.+++|++|++++|.+....|..+..+++|++|++++ +.++.++...+ .++|+.|++++|+
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 777777777777777666666677777777777777 45666643222 3567777777665
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.10 E-value=4e-10 Score=115.89 Aligned_cols=131 Identities=11% Similarity=0.123 Sum_probs=95.3
Q ss_pred CCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCC
Q 047894 925 ANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSS 1004 (1087)
Q Consensus 925 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~ 1004 (1087)
++|++|++++|.+.. ++...+..+++|+.|++++|..-...+. .+.++++|+.|++++|.++...+..|
T Consensus 32 ~~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~----------~~~~l~~L~~L~Ls~N~l~~l~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPD----------AFQGLRSLNSLVLYGNKITELPKSLF 100 (220)
T ss_dssp TTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTT----------TTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred cCCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHH----------HhhCCcCCCEEECCCCcCCccCHhHc
Confidence 478888888888654 3333346788888888888763222121 24566788888888888887666667
Q ss_pred CCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCC--CCCcCeEEEccCCC
Q 047894 1005 SSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGL--PNTISAVYICECDK 1067 (1087)
Q Consensus 1005 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~~ 1067 (1087)
..+++|++|++++|.+....|..+..+++|++|++++ +.++.++...+ .++|+.|++++|+.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8888888888888888777777888888888888888 56777776433 46788888888763
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.09 E-value=4.1e-10 Score=116.70 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=104.7
Q ss_pred CCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCC
Q 047894 925 ANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSS 1004 (1087)
Q Consensus 925 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~ 1004 (1087)
++|++|++++|.+....+..+ ..+++|+.|++++|. +..++.. .+.++++|+.|++++|.+++..+..+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~-l~~i~~~---------~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQ-LGALPVG---------VFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCC-CCCcChh---------hcccCCCcCEEECCCCcCCccChhHh
Confidence 689999999999776656554 689999999999987 3333321 24567888999999999998777778
Q ss_pred CCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCC--CCCcCeEEEccCCCC
Q 047894 1005 SSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGL--PNTISAVYICECDKL 1068 (1087)
Q Consensus 1005 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~~l 1068 (1087)
..+++|++|++++|.+. .+|..+..+++|++|++++ +.++.+|...+ .++|+.|++.+|+..
T Consensus 109 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcchhhCeEeccCCccc-ccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 89999999999999876 7788889999999999998 57888886433 478999999988743
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.08 E-value=1e-10 Score=112.20 Aligned_cols=124 Identities=23% Similarity=0.275 Sum_probs=92.1
Q ss_pred CCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcc-cccccccCC
Q 047894 546 EHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKS-LPESTCKLL 624 (1087)
Q Consensus 546 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~ 624 (1087)
++++.|.+.++.. .....+..+..+++|++|++++|.+..+ ..++.+.+|++|++++|.++. +|..++.++
T Consensus 17 ~~l~~L~l~~n~l-------~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRS-------NEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBC-------BTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcC-------ChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 4566665544322 1012334567788899999999888777 778888899999999998887 777778889
Q ss_pred CCcEEEecCCCCCcccC--cccCCCCCcCEEeecCCccccccCc----cCCCCCCCCccCe
Q 047894 625 NLEILILRNCSRLIKLP--PKMRNLINLNHLDIRGAKLLKEMPC----GMKELKKLRTLSN 679 (1087)
Q Consensus 625 ~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~ 679 (1087)
+|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .++.+++|+.|+.
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 99999999876 56554 678888999999998887 566665 4677777777753
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=1.1e-10 Score=130.42 Aligned_cols=172 Identities=19% Similarity=0.162 Sum_probs=121.0
Q ss_pred cEEEEecCCCccccCCCCCC-CccEEEEeecCCccccCCCCCcccEEEeccCC-CcCCccEEEeccCCCCCCCchhhhcC
Q 047894 871 HKLSIVECPKLSGELPELLP-SLETLVVSKCGKLVVPLSCYPMLCRLEVDECK-ELANLRSLLICNSTALKSLPEEMMEN 948 (1087)
Q Consensus 871 ~~L~l~~c~~l~~~~p~~l~-~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~ 948 (1087)
+.+++.++ .++ .+|..++ .++.|++++|. ++.+....+. ++++|++|++++|.+....+.. +..
T Consensus 21 ~~l~c~~~-~l~-~iP~~~~~~l~~L~Ls~N~-----------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-~~~ 86 (361)
T 2xot_A 21 NILSCSKQ-QLP-NVPQSLPSYTALLDLSHNN-----------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA-FVP 86 (361)
T ss_dssp TEEECCSS-CCS-SCCSSCCTTCSEEECCSSC-----------CCEECTTSSSSCCTTCCEEECCSSCCCEECTTT-TTT
T ss_pred CEEEeCCC-CcC-ccCccCCCCCCEEECCCCC-----------CCccChhhhhhcccccCEEECCCCcCCccChhh-ccC
Confidence 45666655 666 6776554 57899998863 4444445565 7889999999999865544444 468
Q ss_pred CCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCC
Q 047894 949 NSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGL 1028 (1087)
Q Consensus 949 l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l 1028 (1087)
+++|+.|++++|. ++.++.. .+.++++|+.|++++|.++...+..|..+++|++|++++|.+....+..+
T Consensus 87 l~~L~~L~Ls~N~-l~~~~~~---------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 87 VPNLRYLDLSSNH-LHTLDEF---------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred CCCCCEEECCCCc-CCcCCHH---------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 9999999999986 4433321 24466888888899999888888888889999999999998764333334
Q ss_pred ---CCCCCccEEEEecCCCCcccCCCCC--CCC--cCeEEEccCCC
Q 047894 1029 ---PNLKCLQSICIRKCPSLVSFPERGL--PNT--ISAVYICECDK 1067 (1087)
Q Consensus 1029 ---~~l~~L~~L~l~~c~~l~~lp~~~~--~~s--L~~L~i~~c~~ 1067 (1087)
..+++|+.|++++ +.++.+|...+ .++ |+.|++.+|+.
T Consensus 157 ~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp C----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 5689999999998 56777774211 123 57888888763
No 126
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.08 E-value=2.2e-09 Score=111.21 Aligned_cols=186 Identities=14% Similarity=0.066 Sum_probs=116.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|+++.++.+.+++..... ..+.|+|++|+|||++|+.+++...... .-...+.+..+.......+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~------~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNI------PHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVRHK- 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCC------CCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTCHHHHHHH-
T ss_pred HHHcCcHHHHHHHHHHHhCCCC------CeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccChHHHHHH-
Confidence 4689999999999999975422 2389999999999999999987642211 1112334444333222222111
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccc-cc-cCCCc
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA-ST-MGPIE 323 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~-~~-~~~~~ 323 (1087)
+....... ..-.+++.+||+||++......+..+...+.....+.++|+||+..... .. .....
T Consensus 89 ~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 89 IKEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11111000 0113578899999997766555566655555455677888888764321 11 12224
Q ss_pred eeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 324 HYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 324 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
.+.+++++.++..+++...+...... ...+....|++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 78999999999999998876432211 223566789999999999655543
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.06 E-value=5.2e-11 Score=133.35 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=44.6
Q ss_pred cCCCCcccEEEecCCCCcccC-----ccccCCc-cceeeccCCCcCccc-ccccccC-----CCCcEEEecCCCCCcccC
Q 047894 574 LPKFKRLRMLSLQGYCIGELP-----IPFEELR-LLRFLNLADIDIKSL-PESTCKL-----LNLEILILRNCSRLIKLP 641 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp-----~~i~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~~l~~lp 641 (1087)
+...++|++|+|++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|+|++|......+
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 344445666666666665543 3455555 566666666666543 3344443 566666666654222222
Q ss_pred cc----cCCC-CCcCEEeecCCc
Q 047894 642 PK----MRNL-INLNHLDIRGAK 659 (1087)
Q Consensus 642 ~~----i~~L-~~L~~L~l~~~~ 659 (1087)
.. +..+ ++|++|++++|.
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHHhCCCCccEEECcCCc
Confidence 21 2333 556666665554
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.05 E-value=1.8e-10 Score=113.11 Aligned_cols=104 Identities=28% Similarity=0.317 Sum_probs=90.3
Q ss_pred CCCCcccEEEecCCCCc--ccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCE
Q 047894 575 PKFKRLRMLSLQGYCIG--ELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNH 652 (1087)
Q Consensus 575 ~~~~~Lr~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 652 (1087)
...+.|++|++++|.+. .+|..+..+.+|++|++++|.++.+ ..+..+++|++|++++|.....+|..+.++++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34578999999999998 8999999999999999999999988 78999999999999998854448887788999999
Q ss_pred EeecCCccccccC--ccCCCCCCCCccCee
Q 047894 653 LDIRGAKLLKEMP--CGMKELKKLRTLSNF 680 (1087)
Q Consensus 653 L~l~~~~~~~~~p--~~i~~L~~L~~L~~~ 680 (1087)
|++++|. +..+| ..++.+++|+.|+..
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECC
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEee
Confidence 9999998 66665 568888888888644
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=2.5e-10 Score=112.89 Aligned_cols=129 Identities=21% Similarity=0.181 Sum_probs=96.3
Q ss_pred cccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCccccccc-
Q 047894 542 FYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPEST- 620 (1087)
Q Consensus 542 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i- 620 (1087)
+....+++.|.+.++... . ++......++|++|++++|.++.+ ..++.+.+|++|++++|.|+.+|..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~--------~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP--------V-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EECTTSCEEEECTTSCCC--------S-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred cCCcCCceEEEeeCCCCc--------h-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchh
Confidence 445667777766554321 1 122223334899999999998887 67888999999999999999888655
Q ss_pred ccCCCCcEEEecCCCCCcccCc--ccCCCCCcCEEeecCCccccccCcc----CCCCCCCCccCeeee
Q 047894 621 CKLLNLEILILRNCSRLIKLPP--KMRNLINLNHLDIRGAKLLKEMPCG----MKELKKLRTLSNFIV 682 (1087)
Q Consensus 621 ~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~~ 682 (1087)
..+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|+...+
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 889999999999876 677776 78889999999999988 5667764 777888888865433
No 130
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.04 E-value=3.9e-10 Score=119.51 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=59.3
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEE
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHL 653 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 653 (1087)
+..+++|++|++++|.++.+| .++.+.+|++|++++|.|+.+|. +.++++|++|++++|. +..+|. +.. ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-CcccEE
Confidence 344566666666666666665 56666666666666666666655 6666666666666654 455554 222 666666
Q ss_pred eecCCccccccCccCCCCCCCCccCe
Q 047894 654 DIRGAKLLKEMPCGMKELKKLRTLSN 679 (1087)
Q Consensus 654 ~l~~~~~~~~~p~~i~~L~~L~~L~~ 679 (1087)
++++|. +..++ .++++++|+.|+.
T Consensus 112 ~L~~N~-l~~~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 112 FLDNNE-LRDTD-SLIHLKNLEILSI 135 (263)
T ss_dssp ECCSSC-CSBSG-GGTTCTTCCEEEC
T ss_pred EccCCc-cCCCh-hhcCcccccEEEC
Confidence 666665 44443 3556666666543
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.04 E-value=2.2e-10 Score=139.68 Aligned_cols=111 Identities=20% Similarity=0.185 Sum_probs=93.7
Q ss_pred hhhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCC
Q 047894 569 VLSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLI 648 (1087)
Q Consensus 569 ~~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 648 (1087)
..++.+..+..|++|+|++|.+..+|..+.++.+|++|+|++|.|+.+|.+|++|++|++|+|++|. +..+|..|++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 3456688889999999999999999988889999999999999999999999999999999999987 668899999999
Q ss_pred CcCEEeecCCccccccCccCCCCCCCCccCeee
Q 047894 649 NLNHLDIRGAKLLKEMPCGMKELKKLRTLSNFI 681 (1087)
Q Consensus 649 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 681 (1087)
+|++|+|++|. +..+|.++++|++|++|+...
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCC
Confidence 99999999997 678898899999999886543
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.02 E-value=7.2e-10 Score=114.81 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=115.0
Q ss_pred ccEEEEecCCCccccCCCC-CCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcC
Q 047894 870 LHKLSIVECPKLSGELPEL-LPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMEN 948 (1087)
Q Consensus 870 L~~L~l~~c~~l~~~~p~~-l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 948 (1087)
...++..+. .++ .+|.. .++|++|++++|.. ..+....+.++++|++|++++|.+ ..++...+..
T Consensus 21 ~~~v~c~~~-~l~-~ip~~~~~~L~~L~Ls~n~i-----------~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~ 86 (229)
T 3e6j_A 21 GTTVDCRSK-RHA-SVPAGIPTNAQILYLHDNQI-----------TKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDS 86 (229)
T ss_dssp TTEEECTTS-CCS-SCCSCCCTTCSEEECCSSCC-----------CCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTT
T ss_pred CCEeEccCC-CcC-ccCCCCCCCCCEEEcCCCcc-----------CccCHHHhhCccCCcEEECCCCCC-CCcChhhccc
Confidence 455666555 565 66754 46899999998742 222234567788999999999996 5566555678
Q ss_pred CCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccCCCC
Q 047894 949 NSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIPDGL 1028 (1087)
Q Consensus 949 l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l 1028 (1087)
+++|+.|++++|. ++.++.. .+..+++|+.|++++|.++. +|..+..+++|++|++++|.+....+..+
T Consensus 87 l~~L~~L~Ls~N~-l~~l~~~---------~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 87 LTQLTVLDLGTNQ-LTVLPSA---------VFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CTTCCEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCCcCEEECCCCc-CCccChh---------HhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 9999999999986 4444321 23467889999999999984 67778899999999999998886656678
Q ss_pred CCCCCccEEEEecCCCC
Q 047894 1029 PNLKCLQSICIRKCPSL 1045 (1087)
Q Consensus 1029 ~~l~~L~~L~l~~c~~l 1045 (1087)
..+++|+.|++++++.-
T Consensus 156 ~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECTTSCBC
T ss_pred hCCCCCCEEEeeCCCcc
Confidence 99999999999997643
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.02 E-value=1.3e-10 Score=111.39 Aligned_cols=104 Identities=25% Similarity=0.302 Sum_probs=90.2
Q ss_pred CCCcccEEEecCCCCc--ccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEE
Q 047894 576 KFKRLRMLSLQGYCIG--ELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHL 653 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 653 (1087)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 8899999999999999999999988 779999999999999987544488878889999999
Q ss_pred eecCCccccccC--ccCCCCCCCCccCeee
Q 047894 654 DIRGAKLLKEMP--CGMKELKKLRTLSNFI 681 (1087)
Q Consensus 654 ~l~~~~~~~~~p--~~i~~L~~L~~L~~~~ 681 (1087)
++++|. +..+| ..++.+++|+.|+...
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTT
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcC
Confidence 999998 66554 6788888888886543
No 134
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.01 E-value=1.6e-09 Score=119.20 Aligned_cols=274 Identities=14% Similarity=0.105 Sum_probs=146.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|++..++.+.+++......+ .....+.|+|++|+|||++|+.+++... ....+++.+......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~------~~~~~~~~~~~~~~~~----- 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK-EPLEHLLLFGPPGLGKTTLAHVIAHELG------VNLRVTSGPAIEKPGD----- 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC-SCCCCCEEECCTTCCCHHHHHHHHHHHT------CCEEEECTTTCCSHHH-----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC-CCCCcEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeccccCChHH-----
Confidence 569999999999888875321000 1224688999999999999999987532 1123444333222211
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccC------------------CCCcEEE
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA------------------EPNSKMI 307 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~~s~il 307 (1087)
+...+...+ .+..+|+|||+..-.......+...+... .++..+|
T Consensus 80 ----------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 80 ----------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 111111111 35679999999776544444443322211 1234566
Q ss_pred EEcCCcc-ccccc-CC-CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcC--
Q 047894 308 VTTRNSN-VASTM-GP-IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRT-- 382 (1087)
Q Consensus 308 vTtr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~-- 382 (1087)
.||.... +...+ .. ...+.+.+++.++..+++...+..... ....+....|++.++|.|..+..+...+..
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6665432 22111 11 247899999999999998887643221 122456678999999999988766544321
Q ss_pred ----C---CHHHHHHHHhhhccCCCC----CCChHHHHHhhhcCCchhhHHHHHHHccCCCCcccChhhhH----HHhHh
Q 047894 383 ----T---RHDAWDDILESKIWDLPR----QSGVLPVLRLSYHHLPSHLKRCLAYCAIFPKDYEFNEKEVT----FLWMA 447 (1087)
Q Consensus 383 ----~---~~~~w~~~~~~~~~~~~~----~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li----~~w~a 447 (1087)
. +.+....+.......... +..+...+...|..=|.....+-..+++ ++..+. ++-+.
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi-------~~~tl~~~l~~~~i~ 291 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSE-------DPGTLEEVHEPYLIR 291 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTS-------CHHHHHHHTHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCC-------CHHHHHHHHhHHHHH
Confidence 1 444454444432111000 0011111111221111112222222322 233322 23456
Q ss_pred CCCcccCCchhhHHHHHHHHHH-HHhhCCCCcc
Q 047894 448 GGIIRQSRSKERLEDWGSKCFH-DLVSRSIFQQ 479 (1087)
Q Consensus 448 eg~i~~~~~~~~~e~~~~~~~~-~L~~~~l~~~ 479 (1087)
.|+|.....+....+.|.+||. ++.+|+||||
T Consensus 292 ~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 292 QGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 8888765566777888999998 9999999985
No 135
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.01 E-value=2e-09 Score=109.82 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=105.2
Q ss_pred CCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCC
Q 047894 925 ANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSS 1004 (1087)
Q Consensus 925 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~ 1004 (1087)
++|++|++++|.+. .++...+..+++|+.|++++|. ++.++.. .+.++++|++|++++|.+++..+..+
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNK-LQSLPNG---------VFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCc-cCccChh---------hcCCCCCcCEEECCCCcCCccCHhHh
Confidence 47999999999865 4555545789999999999986 3333321 13567889999999999998777778
Q ss_pred CCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCC--CCCCcCeEEEccCCCCC
Q 047894 1005 SSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERG--LPNTISAVYICECDKLE 1069 (1087)
Q Consensus 1005 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~i~~c~~l~ 1069 (1087)
..+++|++|++++|.+....+..+..+++|++|++++ +.++.+|... ..++|+.|++++|+...
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCeec
Confidence 8999999999999988766666688999999999999 4678887743 35799999999986543
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.00 E-value=2.6e-11 Score=135.77 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=69.8
Q ss_pred CCccEeeeccccCCCCcccchhhhhhcccCCCC-cccEEEecCCCCccc-CccccCC-----ccceeeccCCCcCcccc-
Q 047894 546 EHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFK-RLRMLSLQGYCIGEL-PIPFEEL-----RLLRFLNLADIDIKSLP- 617 (1087)
Q Consensus 546 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~i~~l-p~~i~~l-----~~L~~L~L~~~~i~~lp- 617 (1087)
++|+.|.+.++... ......+...+.+++ +|++|+|++|.++.. +..+..+ .+|++|+|++|.++..+
T Consensus 22 ~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 22 HGVTSLDLSLNNLY----SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TTCCEEECTTSCGG----GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCceEEEccCCCCC----hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 34888776554321 111112224566777 888888888888655 4555554 78888888888887543
Q ss_pred cc----cccC-CCCcEEEecCCCCCcccCc-c----cCCC-CCcCEEeecCCc
Q 047894 618 ES----TCKL-LNLEILILRNCSRLIKLPP-K----MRNL-INLNHLDIRGAK 659 (1087)
Q Consensus 618 ~~----i~~L-~~L~~L~L~~~~~l~~lp~-~----i~~L-~~L~~L~l~~~~ 659 (1087)
.. +..+ ++|++|++++|. +...+. . +..+ ++|++|++++|.
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 33 4444 788888888876 444432 2 3343 588888888887
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.95 E-value=1.7e-09 Score=108.39 Aligned_cols=101 Identities=24% Similarity=0.370 Sum_probs=84.8
Q ss_pred CcccEEEecCCCCcccCccccCCccceeeccCCCcCcccc-cccccCCCCcEEEecCCCCCcccC-cccCCCCCcCEEee
Q 047894 578 KRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLP-ESTCKLLNLEILILRNCSRLIKLP-PKMRNLINLNHLDI 655 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 655 (1087)
+.|++|++++|.++.+|..|..+.+|++|+|++|.|+.++ ..|..+++|++|+|++|. +..+| ..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence 5789999999999999999999999999999999999886 468999999999999987 55554 56889999999999
Q ss_pred cCCccccccCcc-CCCCCCCCccCee
Q 047894 656 RGAKLLKEMPCG-MKELKKLRTLSNF 680 (1087)
Q Consensus 656 ~~~~~~~~~p~~-i~~L~~L~~L~~~ 680 (1087)
++|. +..+|.+ +..+++|+.|+..
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred CCCC-CCeeChhhhhcCccccEEEeC
Confidence 9998 6677764 7778888877543
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.94 E-value=1e-09 Score=129.43 Aligned_cols=95 Identities=24% Similarity=0.300 Sum_probs=47.5
Q ss_pred ccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCCc
Q 047894 580 LRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAK 659 (1087)
Q Consensus 580 Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 659 (1087)
|++|+|++|.++.+|. |+.+.+|++|+|++|.|+.+|..++++++|++|+|++|. +..+| .+++|++|++|++++|.
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCC
Confidence 4455555555555544 555555555555555555555555555555555555543 33444 45555555555555554
Q ss_pred ccccc--CccCCCCCCCCccC
Q 047894 660 LLKEM--PCGMKELKKLRTLS 678 (1087)
Q Consensus 660 ~~~~~--p~~i~~L~~L~~L~ 678 (1087)
+..+ |..++++++|+.|+
T Consensus 520 -l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 520 -LQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp -CCSSSTTGGGGGCTTCCEEE
T ss_pred -CCCCCCcHHHhcCCCCCEEE
Confidence 3333 44455555555443
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=6.1e-10 Score=110.12 Aligned_cols=103 Identities=22% Similarity=0.296 Sum_probs=88.2
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCc-cceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCccc-CCCCCcC
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELR-LLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKM-RNLINLN 651 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~ 651 (1087)
+..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ ..+..+++|++|++++|. +..+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 5678899999999999998865 55665 999999999999988 679999999999999987 67787665 8999999
Q ss_pred EEeecCCccccccCc--cCCCCCCCCccCee
Q 047894 652 HLDIRGAKLLKEMPC--GMKELKKLRTLSNF 680 (1087)
Q Consensus 652 ~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~ 680 (1087)
+|++++|. +..+|. .++.+++|+.|+..
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECC
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEec
Confidence 99999998 677776 67788888887644
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=7.8e-09 Score=113.85 Aligned_cols=225 Identities=16% Similarity=0.130 Sum_probs=148.3
Q ss_pred CCCccEeeccccccccccccccccccccccCCcccEEEEecCCCccccCCCC--------CCCccEEEEeecCCccccCC
Q 047894 837 FPSLEILSFENLAEWEHWDTDIKGNVHVEIFPRLHKLSIVECPKLSGELPEL--------LPSLETLVVSKCGKLVVPLS 908 (1087)
Q Consensus 837 fp~L~~L~l~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~--------l~~L~~L~l~~~~~~~~~~~ 908 (1087)
+++|+.|++++.... .+. + ..+.++.+..+..... .+......+ +++|++|.+.+
T Consensus 48 l~~L~~LdLs~n~i~-~~~----~--~~~~~~~~~~~~~~~~-~I~~~aF~~~~~~~~~g~~~L~~l~L~~--------- 110 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK-MYS----G--KAGTYPNGKFYIYMAN-FVPAYAFSNVVNGVTKGKQTLEKVILSE--------- 110 (329)
T ss_dssp CTTCCEEEEEEEEEC-CEE----E--SSSSSGGGCCEEECTT-EECTTTTEEEETTEEEECTTCCC-CBCT---------
T ss_pred hccCeEEecCcceeE-Eec----C--cccccccccccccccc-ccCHHHhcccccccccccCCCcEEECCc---------
Confidence 677888888765422 111 1 1233444444444333 222122223 56666666543
Q ss_pred CCCcccEEEeccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEecc-----------------CCCCcc------
Q 047894 909 CYPMLCRLEVDECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRD-----------------CESLTF------ 965 (1087)
Q Consensus 909 ~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-----------------c~~l~~------ 965 (1087)
+++.+.-..+.++++|++|++.+|.+. .++...+..+.++..+.... |..++.
T Consensus 111 ---~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~ 186 (329)
T 3sb4_A 111 ---KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA 186 (329)
T ss_dssp ---TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECT
T ss_pred ---cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecC
Confidence 355566667888899999999988865 34444455666666555433 222220
Q ss_pred ---cc-----cCCCCCCCCEEEEec-------------ccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCccc
Q 047894 966 ---IA-----RRRLPASLKRLEIEN-------------CEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESI 1024 (1087)
Q Consensus 966 ---~~-----~~~l~~~L~~L~l~~-------------c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 1024 (1087)
++ ....+..+..+.+.+ |++|+.+++++|+++......|.++++|+.|++.+| ...+
T Consensus 187 ~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I 264 (329)
T 3sb4_A 187 MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTI 264 (329)
T ss_dssp TCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEE
T ss_pred CCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--ccee
Confidence 00 001123445555554 899999999999999988888999999999999998 4455
Q ss_pred C-CCCCCCCCcc-EEEEecCCCCcccCCCCCC--CCcCeEEEccCCCCCCCCCCCCCCCCCCcEEe
Q 047894 1025 P-DGLPNLKCLQ-SICIRKCPSLVSFPERGLP--NTISAVYICECDKLEAPPNDMHKLNSLQSLSI 1086 (1087)
Q Consensus 1025 p-~~l~~l~~L~-~L~l~~c~~l~~lp~~~~~--~sL~~L~i~~c~~l~~~p~~l~~l~~L~~l~i 1086 (1087)
+ ..|.++++|+ .|++.+ .++.++...|- ++|+.|++.++..-...+..|.++++|+.++.
T Consensus 265 ~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 265 GQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 4 5789999999 999998 89999987664 68999999877644444557999999999874
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.90 E-value=2.4e-09 Score=126.14 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=89.3
Q ss_pred cCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCccc--CcccCCCCCcC
Q 047894 574 LPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKL--PPKMRNLINLN 651 (1087)
Q Consensus 574 ~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~ 651 (1087)
+..+++|++|+|++|.++.+|..|+.+.+|++|+|++|.|+.+| .++.+++|++|+|++|. +..+ |..++.|++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCC
Confidence 67789999999999999999999999999999999999999999 89999999999999987 5666 89999999999
Q ss_pred EEeecCCccccccCccCCC----CCCCCcc
Q 047894 652 HLDIRGAKLLKEMPCGMKE----LKKLRTL 677 (1087)
Q Consensus 652 ~L~l~~~~~~~~~p~~i~~----L~~L~~L 677 (1087)
+|++++|. +..+|+.+.. +++|+.|
T Consensus 537 ~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 537 LLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred EEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 99999998 6667665433 5566655
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=3.7e-09 Score=106.02 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=79.1
Q ss_pred cccEEEecCCCCcccCcc--ccCCccceeeccCCCcCccc-ccccccCCCCcEEEecCCCCCcccCcccCCCCCcCEEee
Q 047894 579 RLRMLSLQGYCIGELPIP--FEELRLLRFLNLADIDIKSL-PESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDI 655 (1087)
Q Consensus 579 ~Lr~L~l~~~~i~~lp~~--i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 655 (1087)
.|++|++++|.++.++.. |+.+.+|++|+|++|.|+.+ |..+..+++|++|+|++|......|..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788899999888888653 88889999999999988877 678888999999999987743334445888899999999
Q ss_pred cCCccccccCccCCCCCCCCccCe
Q 047894 656 RGAKLLKEMPCGMKELKKLRTLSN 679 (1087)
Q Consensus 656 ~~~~~~~~~p~~i~~L~~L~~L~~ 679 (1087)
++|......|..+..+++|+.|+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEe
Confidence 988843444666778888887754
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=4e-09 Score=103.57 Aligned_cols=94 Identities=26% Similarity=0.398 Sum_probs=47.5
Q ss_pred cEEEecCCCCcccCccccCCccceeeccCCCcCccc-ccccccCCCCcEEEecCCCCCcccCcc-cCCCCCcCEEeecCC
Q 047894 581 RMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSL-PESTCKLLNLEILILRNCSRLIKLPPK-MRNLINLNHLDIRGA 658 (1087)
Q Consensus 581 r~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 658 (1087)
+.++++++.++.+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 445555555555555443 4555555555555544 3345555555555555543 4444443 345555555555555
Q ss_pred ccccccCcc-CCCCCCCCccC
Q 047894 659 KLLKEMPCG-MKELKKLRTLS 678 (1087)
Q Consensus 659 ~~~~~~p~~-i~~L~~L~~L~ 678 (1087)
. +..+|.+ +..+++|+.|+
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEE
T ss_pred c-cceeCHHHhccccCCCEEE
Confidence 4 4444443 44555555543
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.85 E-value=9.1e-09 Score=103.07 Aligned_cols=97 Identities=22% Similarity=0.237 Sum_probs=84.1
Q ss_pred cEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccC-cccCCCCCcCEEeecCCc
Q 047894 581 RMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLP-PKMRNLINLNHLDIRGAK 659 (1087)
Q Consensus 581 r~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 659 (1087)
++++++++.++.+|..+. ..|++|++++|.|+.+|..+..+++|++|+|++|. +..++ ..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999998775 58999999999999999999999999999999987 55554 569999999999999998
Q ss_pred cccccCc-cCCCCCCCCccCeee
Q 047894 660 LLKEMPC-GMKELKKLRTLSNFI 681 (1087)
Q Consensus 660 ~~~~~p~-~i~~L~~L~~L~~~~ 681 (1087)
+..+|. .+..+++|+.|+...
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCS
T ss_pred -cCEeCHHHhCCCCCCCEEECCC
Confidence 666665 588899999886543
No 145
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.83 E-value=9.3e-09 Score=114.75 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=116.9
Q ss_pred CCccEEEeccCCCCCCCchhhhc-CCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCC
Q 047894 925 ANLRSLLICNSTALKSLPEEMME-NNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSS 1003 (1087)
Q Consensus 925 ~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~ 1003 (1087)
..++.|++++|.+....+. .+. .+++|+.|++++|. +..++.. .+.++++|+.|++++|+++...+..
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~-i~~i~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNH-LNFISSE---------AFVPVPNLRYLDLSSNHLHTLDEFL 107 (361)
T ss_dssp TTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCc-CCccChh---------hccCCCCCCEEECCCCcCCcCCHHH
Confidence 3688999999986554443 344 89999999999986 3333321 2456789999999999999887888
Q ss_pred CCCCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecCCCCcccCCCCC-----CCCcCeEEEccCCCCCCCC-CCCCC
Q 047894 1004 SSSPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKCPSLVSFPERGL-----PNTISAVYICECDKLEAPP-NDMHK 1077 (1087)
Q Consensus 1004 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c~~l~~lp~~~~-----~~sL~~L~i~~c~~l~~~p-~~l~~ 1077 (1087)
|..+++|++|++++|.+....|..+..+++|+.|++++ +.++.+|...+ +++|+.|++++|. ++.+| ..+..
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 185 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQK 185 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhh
Confidence 99999999999999999877788999999999999999 67888887543 6899999999986 45555 34555
Q ss_pred CCC--CCcEEe
Q 047894 1078 LNS--LQSLSI 1086 (1087)
Q Consensus 1078 l~~--L~~l~i 1086 (1087)
++. |+.|++
T Consensus 186 l~~~~l~~l~l 196 (361)
T 2xot_A 186 LPAWVKNGLYL 196 (361)
T ss_dssp SCHHHHTTEEC
T ss_pred ccHhhcceEEe
Confidence 555 366665
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.9e-08 Score=110.70 Aligned_cols=186 Identities=15% Similarity=0.150 Sum_probs=115.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|++..++.+.+++..... ..+.++|++|+|||++|+.+++...... .....+++..+....... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~------~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNM------PHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCC------CCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCCC------CeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccChHH-HHHH
Confidence 4699999999999999875421 2388999999999999999987642111 111233444333222211 1222
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhh-CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc-ccccc-CCC
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAV-DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN-VASTM-GPI 322 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~-v~~~~-~~~ 322 (1087)
++.+.... ..+ .+++.++|+||++.-....+..+...+.....++.+|+||.... +...+ ...
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22211000 012 45688999999977665566666655554456778888886532 21111 223
Q ss_pred ceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhH-HHHHH
Q 047894 323 EHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALA-AKTLG 377 (1087)
Q Consensus 323 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa-i~~~~ 377 (1087)
..+.+.+++.++..+++...+...... ...+....|++.++|.|.. +..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK----YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 479999999999999998876432211 2245667899999999964 44443
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.83 E-value=2.1e-09 Score=130.96 Aligned_cols=118 Identities=24% Similarity=0.310 Sum_probs=96.4
Q ss_pred ccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCccccccc
Q 047894 541 VFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPEST 620 (1087)
Q Consensus 541 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i 620 (1087)
.+..+..|+.|.+..+... .+... +.++++|++|+|++|.++.+|..|++|.+|++|+|++|.|+.+|.+|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~--------~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF--------NISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp ---CCCCCCEEECTTSCCS--------CCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred hhccCCCCcEEECCCCCCC--------CCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 3556778888877655431 12222 34789999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCCccccccCccC
Q 047894 621 CKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGAKLLKEMPCGM 668 (1087)
Q Consensus 621 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 668 (1087)
++|.+|++|+|++|. +..+|..|++|++|++|+|++|.....+|..+
T Consensus 290 ~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 999999999999986 78999999999999999999998444445444
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.82 E-value=9.4e-09 Score=103.02 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=84.0
Q ss_pred cEEEecCCCCcccCccccCCccceeeccCCCcCcccccc--cccCCCCcEEEecCCCCCcccCcccCCCCCcCEEeecCC
Q 047894 581 RMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPES--TCKLLNLEILILRNCSRLIKLPPKMRNLINLNHLDIRGA 658 (1087)
Q Consensus 581 r~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 658 (1087)
++++++++.++.+|..+.. +|++|++++|.|+.+|.. ++.+++|++|+|++|......|..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999988765 999999999999999764 899999999999998754445888999999999999999
Q ss_pred ccccccCc-cCCCCCCCCccCeee
Q 047894 659 KLLKEMPC-GMKELKKLRTLSNFI 681 (1087)
Q Consensus 659 ~~~~~~p~-~i~~L~~L~~L~~~~ 681 (1087)
. +..++. .+..+++|++|+...
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCS
T ss_pred c-CCccCHHHhcCCCCCCEEECCC
Confidence 8 555554 488889999886543
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=1e-08 Score=100.35 Aligned_cols=97 Identities=27% Similarity=0.370 Sum_probs=65.2
Q ss_pred ccEEEecCCCCcccCccccCCccceeeccCCCcCccc-ccccccCCCCcEEEecCCCCCcccCcc-cCCCCCcCEEeecC
Q 047894 580 LRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSL-PESTCKLLNLEILILRNCSRLIKLPPK-MRNLINLNHLDIRG 657 (1087)
Q Consensus 580 Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 657 (1087)
.++++++++.++.+|..+. .+|++|+|++|.|+.+ |..+..+.+|++|+|++|. +..+|.. +.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence 4567777777777776663 5777777777777766 4557777777777777765 5555544 46777777777777
Q ss_pred CccccccCcc-CCCCCCCCccCee
Q 047894 658 AKLLKEMPCG-MKELKKLRTLSNF 680 (1087)
Q Consensus 658 ~~~~~~~p~~-i~~L~~L~~L~~~ 680 (1087)
|. +..+|.+ +.++++|+.|+..
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeC
Confidence 76 5556554 6667777666543
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=1.3e-08 Score=99.92 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=77.9
Q ss_pred CcccEEEecCCCCccc-CccccCCccceeeccCCCcCcccccc-cccCCCCcEEEecCCCCCcccCcc-cCCCCCcCEEe
Q 047894 578 KRLRMLSLQGYCIGEL-PIPFEELRLLRFLNLADIDIKSLPES-TCKLLNLEILILRNCSRLIKLPPK-MRNLINLNHLD 654 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 654 (1087)
++|++|+|++|.+..+ |..|+++.+|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 7899999999999888 67899999999999999999999875 5899999999999976 6777775 89999999999
Q ss_pred ecCCccccccCccC
Q 047894 655 IRGAKLLKEMPCGM 668 (1087)
Q Consensus 655 l~~~~~~~~~p~~i 668 (1087)
+++|. +...+..+
T Consensus 112 L~~N~-~~c~~~~~ 124 (174)
T 2r9u_A 112 LYNNP-WDCECRDI 124 (174)
T ss_dssp CCSSC-BCTTBGGG
T ss_pred eCCCC-cccccccH
Confidence 99998 55555433
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.73 E-value=3.8e-08 Score=97.28 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=46.0
Q ss_pred CccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCC
Q 047894 926 NLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSS 1005 (1087)
Q Consensus 926 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~ 1005 (1087)
+|++|++++|.+. .++...+..+++|+.|++++|. ++.++.. .+.++++|+.|++++|.+++..+..+.
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~N~l~~~~~~~~~ 97 (177)
T 2o6r_A 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQ-IQSLPDG---------VFDKLTKLTILYLHENKLQSLPNGVFD 97 (177)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCc-ceEeChh---------HccCCCccCEEECCCCCccccCHHHhh
Confidence 4555555555533 2232222345555555555543 2222110 122334444445555554444444444
Q ss_pred CCCCccEEEEeccCCCcccCCCCCCCCCccEEEEecC
Q 047894 1006 SPVMLQLLRIENCRKLESIPDGLPNLKCLQSICIRKC 1042 (1087)
Q Consensus 1006 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~c 1042 (1087)
.+++|++|++++|.+....+..+..+++|++|+++++
T Consensus 98 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 4455555555555444322223344555555555543
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.73 E-value=2.7e-08 Score=98.37 Aligned_cols=101 Identities=31% Similarity=0.437 Sum_probs=74.1
Q ss_pred CcccEEEecCCCCcccCc-cccCCccceeeccCCCcCcccccc-cccCCCCcEEEecCCCCCcccCcc-cCCCCCcCEEe
Q 047894 578 KRLRMLSLQGYCIGELPI-PFEELRLLRFLNLADIDIKSLPES-TCKLLNLEILILRNCSRLIKLPPK-MRNLINLNHLD 654 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 654 (1087)
++|++|++++|.+..+|. .++.+.+|++|++++|.++.+|.. +..+++|++|++++|. +..+|.. +.++++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 577888888888877754 467888888888888888877654 6788888888888876 5555543 57788888888
Q ss_pred ecCCccccccCcc-CCCCCCCCccCee
Q 047894 655 IRGAKLLKEMPCG-MKELKKLRTLSNF 680 (1087)
Q Consensus 655 l~~~~~~~~~p~~-i~~L~~L~~L~~~ 680 (1087)
+++|. +..+|.. +..+++|+.|+..
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEec
Confidence 88887 5666665 4667777776543
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=2.6e-08 Score=109.58 Aligned_cols=101 Identities=11% Similarity=0.007 Sum_probs=63.7
Q ss_pred CCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCcc-EEEEeccCCCcccCC
Q 047894 948 NNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQ-LLRIENCRKLESIPD 1026 (1087)
Q Consensus 948 ~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~p~ 1026 (1087)
.+++|+.|++++|. ++.++.. .|.+|.+|+.+++..| +.......|.++++|+ .|.+.+ .+...-+.
T Consensus 224 ~~~~L~~l~L~~n~-i~~I~~~---------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~ 291 (329)
T 3sb4_A 224 YMPNLVSLDISKTN-ATTIPDF---------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFG 291 (329)
T ss_dssp HCTTCCEEECTTBC-CCEECTT---------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTT
T ss_pred hcCCCeEEECCCCC-cceecHh---------hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchh
Confidence 36677777777654 4444432 2456666666666665 5555566677777787 788877 34333345
Q ss_pred CCCCCCCccEEEEecCCCCcccCCCCCC--CCcCeEE
Q 047894 1027 GLPNLKCLQSICIRKCPSLVSFPERGLP--NTISAVY 1061 (1087)
Q Consensus 1027 ~l~~l~~L~~L~l~~c~~l~~lp~~~~~--~sL~~L~ 1061 (1087)
.|.++++|++|++++ +.++.++...|. ++|+.++
T Consensus 292 aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 677788888888766 567777775553 4566554
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.70 E-value=8.7e-11 Score=118.83 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=71.2
Q ss_pred ccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCcccccccccCCCCcEEEecCCCCCcccCcccCCCCCcCE
Q 047894 573 LLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPESTCKLLNLEILILRNCSRLIKLPPKMRNLINLNH 652 (1087)
Q Consensus 573 ~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 652 (1087)
.+..+++|++|++++|.+..+| .++.+.+|++|++++|.++.+|..+..+++|++|++++|. +..+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCE
Confidence 4566677777777777777776 7777777777777777777777777777777777777764 55566 4677777777
Q ss_pred EeecCCccccccCc--cCCCCCCCCccCe
Q 047894 653 LDIRGAKLLKEMPC--GMKELKKLRTLSN 679 (1087)
Q Consensus 653 L~l~~~~~~~~~p~--~i~~L~~L~~L~~ 679 (1087)
|++++|. +..+|. .+..+++|+.|+.
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEE
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEe
Confidence 7777776 444433 4566666666643
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.3e-07 Score=104.01 Aligned_cols=187 Identities=13% Similarity=0.086 Sum_probs=115.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|+++.++.+.+++.... ...+.++|++|+||||+|+.+++...... .-...+.+..+.......+ +..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGINVI-REK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHHHTT-HHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccCchHHH-HHH
Confidence 458999999999999987642 22489999999999999999987642111 1012233443322111111 111
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCccc-cccc-CCCc
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNV-ASTM-GPIE 323 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v-~~~~-~~~~ 323 (1087)
+....... ....+++.++|+||++.-....+..+...+.....++++|+||....- ...+ ....
T Consensus 97 ~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 97 VKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 11100000 011256889999999776656666666655555567788888875431 1111 1124
Q ss_pred eeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHh
Q 047894 324 HYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGG 378 (1087)
Q Consensus 324 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 378 (1087)
.+.+.+++.++...++...+..... ....+....|++.++|.|..+..+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 6899999999999999887643221 12345667899999999997655443
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.65 E-value=2.1e-07 Score=99.08 Aligned_cols=174 Identities=10% Similarity=0.043 Sum_probs=105.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc--cCC--CeEEEEEeCCcccHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD--SKF--DVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~--~~f--~~~~wv~~s~~~~~~~~~ 242 (1087)
.+.||++|+++|...|...-.. +....+.|+|++|+|||++|+.|++...... ... -..+.|+.....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~--~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS--SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 3789999999999887653221 3446789999999999999999998763211 011 134667766777888899
Q ss_pred HHHHHHhhcCCCC-cccHHHHHHHHHHh--hCCCceEEEEecCCCCCHhhHHHhhccccc-CCCCc--EEEEEcCCcccc
Q 047894 243 KALLESITSAASD-LKTLNEVQVQLKKA--VDGKRFLLVLDDVWNEDYSLWVDLKAPFLA-AEPNS--KMIVTTRNSNVA 316 (1087)
Q Consensus 243 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~~s--~ilvTtr~~~v~ 316 (1087)
..|++++...... ....+.+...+... -.++++++|||+++.-. ..+.+...+.. ....+ .||.++...+..
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999654221 22333333333332 24578999999996543 11122222110 11223 333444433221
Q ss_pred c---------ccCCCceeeCCCCChHhHHHHHHHhhcC
Q 047894 317 S---------TMGPIEHYNLKSLSDDDCWSIFIKHVFE 345 (1087)
Q Consensus 317 ~---------~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 345 (1087)
. .++ ...+.+++++.+|-.+++.+++-.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 111 146899999999999999887643
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.64 E-value=8.2e-10 Score=111.60 Aligned_cols=127 Identities=23% Similarity=0.239 Sum_probs=102.4
Q ss_pred ccccCCCccEeeeccccCCCCcccchhhhhhcccCCCCcccEEEecCCCCcccCccccCCccceeeccCCCcCccccccc
Q 047894 541 VFYEIEHLRTFLPLRIRGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGELPIPFEELRLLRFLNLADIDIKSLPEST 620 (1087)
Q Consensus 541 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i 620 (1087)
.+..+++|+.|.+.++... . ++ .+.++++|++|++++|.+..+|..++.+++|++|++++|.++.+| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~--------~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE--------K-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEES--------C-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred HHhcCCCCCEEECCCCCCc--------c-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 5677889999987655321 1 22 467789999999999999999998888999999999999999988 69
Q ss_pred ccCCCCcEEEecCCCCCcccCc--ccCCCCCcCEEeecCCccccccCcc----------CCCCCCCCccCe
Q 047894 621 CKLLNLEILILRNCSRLIKLPP--KMRNLINLNHLDIRGAKLLKEMPCG----------MKELKKLRTLSN 679 (1087)
Q Consensus 621 ~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----------i~~L~~L~~L~~ 679 (1087)
..+++|++|++++|. +..+|. .+..+++|++|++++|......|.. +..+++|+.|+.
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 999999999999976 666654 6899999999999999843333332 667788888763
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=6.8e-08 Score=94.43 Aligned_cols=81 Identities=28% Similarity=0.356 Sum_probs=73.4
Q ss_pred CcccEEEecCCCCccc-CccccCCccceeeccCCCcCcccccc-cccCCCCcEEEecCCCCCcccCc-ccCCCCCcCEEe
Q 047894 578 KRLRMLSLQGYCIGEL-PIPFEELRLLRFLNLADIDIKSLPES-TCKLLNLEILILRNCSRLIKLPP-KMRNLINLNHLD 654 (1087)
Q Consensus 578 ~~Lr~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 654 (1087)
+.|++|+|++|.++.+ |..|+.+.+|++|+|++|.|+.+|.. +..+++|++|+|++|. +..+|. .+.++++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEE
Confidence 7899999999999888 67799999999999999999999875 6899999999999986 677766 488999999999
Q ss_pred ecCCc
Q 047894 655 IRGAK 659 (1087)
Q Consensus 655 l~~~~ 659 (1087)
+++|.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 99997
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.62 E-value=1.1e-06 Score=98.63 Aligned_cols=80 Identities=8% Similarity=-0.003 Sum_probs=34.9
Q ss_pred CCCCCCCCccEEEEeccCCCccc-CCCCCCCCCccEEEEecCCCCcccCCCCCC-CCcCeEEEccCCCCCCCCCCCCCCC
Q 047894 1002 SSSSSPVMLQLLRIENCRKLESI-PDGLPNLKCLQSICIRKCPSLVSFPERGLP-NTISAVYICECDKLEAPPNDMHKLN 1079 (1087)
Q Consensus 1002 ~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~-~sL~~L~i~~c~~l~~~p~~l~~l~ 1079 (1087)
..|.++++|+.+.+.++ + ..+ ...|.++++|+.|.+.. +++.++...|. .+|+.+++.++......+..+..++
T Consensus 294 ~aF~~c~~L~~l~l~~~-i-~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 294 YCLEGCPKLARFEIPES-I-RILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp TTTTTCTTCCEECCCTT-C-CEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSC
T ss_pred HHhhCCccCCeEEeCCc-e-EEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCC
Confidence 34455555555555532 2 222 23444555555555543 34555443322 1455555555433332233344442
Q ss_pred -CCCcEE
Q 047894 1080 -SLQSLS 1085 (1087)
Q Consensus 1080 -~L~~l~ 1085 (1087)
.++.|+
T Consensus 370 ~~l~~l~ 376 (401)
T 4fdw_A 370 DDITVIR 376 (401)
T ss_dssp TTCCEEE
T ss_pred CCccEEE
Confidence 444444
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.52 E-value=8.9e-07 Score=99.40 Aligned_cols=196 Identities=13% Similarity=0.147 Sum_probs=114.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|++..++.+.+++..... ...+.|+|++|+||||+|+.+++...... .+.. .......+ ...+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~-----~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~---~~~~~~~~----~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA---TPCGVCDN----CREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC-----CSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCS---SCCSSSHH----HHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCC---CCCcccHH----HHHH
Confidence 3599999999999999875432 24678999999999999999987543211 1100 00000000 0111
Q ss_pred HHHh-------hcC-CCCcccHHHHHHHHHHh-hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc-c
Q 047894 246 LESI-------TSA-ASDLKTLNEVQVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN-V 315 (1087)
Q Consensus 246 ~~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~-v 315 (1087)
.... ... ........++...+... ..+++.++|+||++.-+...+..+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 1000 000 01112222222222111 235678999999977665566666665554445667777765432 2
Q ss_pred cccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHh
Q 047894 316 ASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGG 378 (1087)
Q Consensus 316 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 378 (1087)
...+ .....+.+.+++.++..+++...+...+. ....+....|++.++|.|..+..+..
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1111 22357899999999999999876532211 12234567899999999998776543
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=3e-07 Score=102.05 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=41.2
Q ss_pred EecCC-CCcccCccccCCccceeeccCC-CcCcccc-cccccCCCCcEEEecCCCCCccc-CcccCCCCCcCEEeecCCc
Q 047894 584 SLQGY-CIGELPIPFEELRLLRFLNLAD-IDIKSLP-ESTCKLLNLEILILRNCSRLIKL-PPKMRNLINLNHLDIRGAK 659 (1087)
Q Consensus 584 ~l~~~-~i~~lp~~i~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 659 (1087)
+++++ .++.+|. |+.+.+|++|+|++ |.|+.+| ..|+.|.+|++|+|++|. +..+ |..|.+|++|++|+|++|.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444 4555555 55555555555553 5555554 345555555555555544 3333 2334555555555555554
Q ss_pred cccccCcc
Q 047894 660 LLKEMPCG 667 (1087)
Q Consensus 660 ~~~~~p~~ 667 (1087)
+..+|.+
T Consensus 92 -l~~~~~~ 98 (347)
T 2ifg_A 92 -LESLSWK 98 (347)
T ss_dssp -CSCCCST
T ss_pred -cceeCHH
Confidence 4444443
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.41 E-value=1.5e-06 Score=95.09 Aligned_cols=182 Identities=13% Similarity=0.103 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCC-eEEEEEeCCcccHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFD-VKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 244 (1087)
..++|++..++.+.+++.... ...+.++|++|+|||++|+.+++..... .+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~--~~~~~~~~~~~~~~~~~~----- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGE--NWRDNFIEMNASDERGID----- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHHHHTT--CHHHHCEEEETTSTTCTT-----
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHHhcCC--cccCCeEEEeCccccChH-----
Confidence 468999999999988875432 1238999999999999999998763211 111 12233333221111
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHh--h-CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc-ccccc-
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKA--V-DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN-VASTM- 319 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~-v~~~~- 319 (1087)
...+....+... + .+++.++|+|+++.-.......+...+.....+..+|+||.... +...+
T Consensus 84 -------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 84 -------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp -------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred -------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 011111111111 1 25688999999976655556666666654456678888776543 21111
Q ss_pred CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 320 GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 320 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
.....+.+.+++.++...++...+...... ...+....|++.++|.+..+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCC----BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222479999999999999998876432221 234566788999999998655443
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.40 E-value=1e-05 Score=90.75 Aligned_cols=167 Identities=12% Similarity=0.154 Sum_probs=106.4
Q ss_pred CcccEEEEecCCCcc---ccCCCCCCCccEEEEeecCCccccCCCCCcccEEEeccCCCcCCccEEEeccCCCCCCCchh
Q 047894 868 PRLHKLSIVECPKLS---GELPELLPSLETLVVSKCGKLVVPLSCYPMLCRLEVDECKELANLRSLLICNSTALKSLPEE 944 (1087)
Q Consensus 868 ~~L~~L~l~~c~~l~---~~~p~~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 944 (1087)
.+|+.+.+.+. ++ .....++++|+.+.+.++ ++.+.-..+.+ .+|+.+.+.++ +..++..
T Consensus 203 ~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~------------l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~ 265 (401)
T 4fdw_A 203 AGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN------------VSTIGQEAFRE-SGITTVKLPNG--VTNIASR 265 (401)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT------------CCEECTTTTTT-CCCSEEEEETT--CCEECTT
T ss_pred cccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC------------ccCcccccccc-CCccEEEeCCC--ccEEChh
Confidence 45666665432 22 112234556666665432 34444445555 57888888432 3455555
Q ss_pred hhcCCCCCceEEeccCCCC----cccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCC
Q 047894 945 MMENNSQLEKLYIRDCESL----TFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRK 1020 (1087)
Q Consensus 945 ~~~~l~~L~~L~l~~c~~l----~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 1020 (1087)
.|..|++|+.+++.++..- ..++.. .+.+|++|+.+.+. +.++......|.++++|+.+.|..+ .
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---------aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPY---------CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTT---------TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHH---------HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence 5678888999888775421 112211 36678888888887 4466666778889999999999765 3
Q ss_pred Cccc-CCCCCCCCCccEEEEecCCCCcccCCC---CCCCCcCeEEEccC
Q 047894 1021 LESI-PDGLPNLKCLQSICIRKCPSLVSFPER---GLPNTISAVYICEC 1065 (1087)
Q Consensus 1021 ~~~~-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~~sL~~L~i~~c 1065 (1087)
..+ ...|.++ +|++|++.+ +.+..++.. +++.+++.|+|..+
T Consensus 335 -~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 335 -TQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp -CEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred -cEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCHH
Confidence 344 4578888 999999998 456666664 34467888888653
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.39 E-value=6.9e-06 Score=90.54 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=105.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHH
Q 047894 165 EPEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
-..++|++..++.+..++......+ .....|.|+|++|+|||++|+.+++... . . .+.++.+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~ia~~~~--~-~---~~~~~~~~~~~------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRN-ECLDHILFSGPAGLGKTTLANIISYEMS--A-N---IKTTAAPMIEK------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTT-SCCCCEEEECSTTSSHHHHHHHHHHHTT--C-C---EEEEEGGGCCS-------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcC-CCCCeEEEECcCCCCHHHHHHHHHHHhC--C-C---eEEecchhccc-------
Confidence 3569999999999998886531100 2334589999999999999999977532 1 2 23333322211
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccC------------------CCCcEE
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA------------------EPNSKM 306 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~~s~i 306 (1087)
.......+.. ..+..+|+||++..........+...+... .++..+
T Consensus 94 --------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 94 --------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp --------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred --------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 1111111111 245678999999766544444444333221 112455
Q ss_pred EEEcCCcc-ccccc--CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 307 IVTTRNSN-VASTM--GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 307 lvTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
|.||.... +...+ .....+.+++++.++...++...+..... ....+....|++.+.|.|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 65555422 11111 11257899999999999999877643221 1234566788899999996655443
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=1.9e-05 Score=88.99 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=28.6
Q ss_pred ecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccC-CCCCCCCCccEEEEec
Q 047894 981 ENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIP-DGLPNLKCLQSICIRK 1041 (1087)
Q Consensus 981 ~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~ 1041 (1087)
.+|.+|+.+.+..+ ++......|.++++|+.+.+..+ +..++ ..+.++++|+++++..
T Consensus 317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 34455555444322 33333445555666666665544 22332 3455666666666653
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=9.7e-07 Score=97.92 Aligned_cols=88 Identities=22% Similarity=0.192 Sum_probs=75.9
Q ss_pred hhcccCCCCcccEEEecC-CCCcccC-ccccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCCCCCcccCcccCC
Q 047894 570 LSDLLPKFKRLRMLSLQG-YCIGELP-IPFEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNCSRLIKLPPKMRN 646 (1087)
Q Consensus 570 ~~~~~~~~~~Lr~L~l~~-~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 646 (1087)
++. +..+.+|+.|+|++ |.+..+| ..|++|.+|++|+|++|.|+.+|. .|.+|++|++|+|++|. +..+|..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcc
Confidence 344 78889999999996 9999887 579999999999999999998864 78999999999999976 7788876655
Q ss_pred CCCcCEEeecCCc
Q 047894 647 LINLNHLDIRGAK 659 (1087)
Q Consensus 647 L~~L~~L~l~~~~ 659 (1087)
..+|++|++.+|.
T Consensus 102 ~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 102 GLSLQELVLSGNP 114 (347)
T ss_dssp SCCCCEEECCSSC
T ss_pred cCCceEEEeeCCC
Confidence 4459999999987
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.25 E-value=1.7e-06 Score=90.30 Aligned_cols=175 Identities=14% Similarity=0.067 Sum_probs=100.3
Q ss_pred Cccccc---hhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGR---EEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr---~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..|+|+ +..++.+..+.... ....+.|+|++|+||||+|+.+++..... ...+.|+..+...+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~~--- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASIS--- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGSC---
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHH---
Confidence 346663 35556666655432 22578999999999999999998865422 2345666654422110
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhh--HHHhhccccc-CCCCc-EEEEEcCCccc---
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSL--WVDLKAPFLA-AEPNS-KMIVTTRNSNV--- 315 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~~s-~ilvTtr~~~v--- 315 (1087)
.+. + +.+ .++.+||+||++...... ...+...+.. ...+. ++|+||+...-
T Consensus 96 ---~~~-----------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 96 ---TAL-----------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp ---GGG-----------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred ---HHH-----------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 000 0 011 346799999996543222 2223222211 11222 47777764321
Q ss_pred ------ccccCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHh
Q 047894 316 ------ASTMGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGG 378 (1087)
Q Consensus 316 ------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 378 (1087)
...+.....+.+++++.++..+++...+..... ....++...|++.++|.+-.+..+..
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 011111257899999999999999887642221 12345667899999998877665433
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.23 E-value=1.7e-06 Score=86.68 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++||+++++++.+++.... ...+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999986532 2457899999999999999998764
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=8.4e-06 Score=90.56 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=112.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-cCCCeEEEEEeCCcccHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-SKFDVKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~ 244 (1087)
..++|+++.++.+..++..... ..+.++|++|+||||+|+.+.+...... ..+ ....+..+....... ..+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~------~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 108 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANL------PHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISI-VRE 108 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTC------CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHH-HTT
T ss_pred HHhhCCHHHHHHHHHHHhcCCC------CEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHH-HHH
Confidence 4689999999999998865421 2278999999999999999987643110 011 223344333222222 222
Q ss_pred HHHHhhcC-CCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc-ccccc-CC
Q 047894 245 LLESITSA-ASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN-VASTM-GP 321 (1087)
Q Consensus 245 i~~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~-v~~~~-~~ 321 (1087)
........ ....... .....-.+++-+|++|++..-.......+...+.......++|++|.... +...+ ..
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22222111 0000000 00111124556999999876655555555555544445667777765432 21111 11
Q ss_pred CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 322 IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 322 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
...+.+.+++.++...++...+..... ...++....|++.++|.|..+..+.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENV----KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 246889999999999999887643221 1224567789999999998755443
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.14 E-value=2.8e-05 Score=87.89 Aligned_cols=180 Identities=19% Similarity=0.178 Sum_probs=102.3
Q ss_pred CccccchhhH---HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDK---AKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~---~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++|.+..+ ..+...+.... ...+.++|++|+||||+|+.+++.... .| ..++... ..... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~~~~~---~f---~~l~a~~-~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIARYANA---DV---ERISAVT-SGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHHHTTC---EE---EEEETTT-CCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHHHhCC---Ce---EEEEecc-CCHHH-H
Confidence 4689998887 67777776542 356899999999999999999886421 22 1222211 11111 1
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEE-EcCCcc--ccc-c
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIV-TTRNSN--VAS-T 318 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilv-Ttr~~~--v~~-~ 318 (1087)
+.++... ......+++.+|+||++..-.......+...+.. . ...+|. ||.+.. +.. .
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHH
Confidence 1111111 0111246788999999976554444444444432 1 233343 444432 111 1
Q ss_pred cCCCceeeCCCCChHhHHHHHHHhhcCCCCC---CcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 319 MGPIEHYNLKSLSDDDCWSIFIKHVFESRDL---NAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 319 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
......+.+++++.++...++.+.+...... .......+....|++.++|.+-.+..+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1222578899999999999998876431110 1123445677889999999887655443
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.12 E-value=1.5e-05 Score=90.44 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=95.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDG 272 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (1087)
...+.|+|++|+||||||+.+++...... .-..+++++.. .+..++...+... ... .+...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSE------KFLNDLVDSMKEG-----KLN----EFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHH------HHHHHHHHHHHTT-----CHH----HHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHH------HHHHHHHHHHHcc-----cHH----HHHHHhcC
Confidence 45689999999999999999988643211 01123444433 2344444444321 111 23333444
Q ss_pred CceEEEEecCCCCCH--hhHHHhhccccc-CCCCcEEEEEcCCcc---------cccccCCCceeeCCCCChHhHHHHHH
Q 047894 273 KRFLLVLDDVWNEDY--SLWVDLKAPFLA-AEPNSKMIVTTRNSN---------VASTMGPIEHYNLKSLSDDDCWSIFI 340 (1087)
Q Consensus 273 kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~~s~ilvTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 340 (1087)
+.-+|+|||++.... .....+...+.. ...|..||+||.... +...+.....+.+++++.++...++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 678999999954331 222333333221 235678888887532 11223333568899999999999998
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 341 KHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
+.+...... ...++...|++.++|.+-.+..+
T Consensus 274 ~~~~~~~~~----i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 274 KMLEIEHGE----LPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHTCC----CCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHcCCC----CCHHHHHHHHHhcCCCHHHHHHH
Confidence 876422111 11234567888999988755443
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.10 E-value=0.00021 Score=80.43 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=44.4
Q ss_pred CCCCCCCCCCccEEEEeccCCCcccC-CCCCCCCCccEEEEecCCCCcccCCCCCC--CCcCeEEEccCCCCCCCCCCCC
Q 047894 1000 SPSSSSSPVMLQLLRIENCRKLESIP-DGLPNLKCLQSICIRKCPSLVSFPERGLP--NTISAVYICECDKLEAPPNDMH 1076 (1087)
Q Consensus 1000 ~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~c~~l~~lp~~~~~--~sL~~L~i~~c~~l~~~p~~l~ 1076 (1087)
....|.++++|+.++|.++ ...++ ..+.++++|+++.+.. .++.++...|- ++|+.+++..+ ++.+...+.
T Consensus 312 ~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~ 385 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR--LEQYRYDFE 385 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBC
T ss_pred chhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC--CEEhhheec
Confidence 3445666677777776543 23342 4566677777777764 36666665443 46777777542 333334456
Q ss_pred CCCCCCc
Q 047894 1077 KLNSLQS 1083 (1087)
Q Consensus 1077 ~l~~L~~ 1083 (1087)
++++|+.
T Consensus 386 ~c~~L~~ 392 (394)
T 4fs7_A 386 DTTKFKW 392 (394)
T ss_dssp TTCEEEE
T ss_pred CCCCCcE
Confidence 6666554
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.10 E-value=3.2e-05 Score=82.77 Aligned_cols=186 Identities=16% Similarity=0.107 Sum_probs=100.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc
Q 047894 165 EPEVFGREEDKAKILDMVLADTPR-------DHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD 237 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 237 (1087)
-..++|.++.++++.+.+...... +....+.+.|+|++|+|||++|+.+++.... ..+.+..+....
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~------~~~~v~~~~~~~ 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA------TFIRVVGSELVK 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC------EEEEEEGGGGCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehHHHHH
Confidence 356899999999998877432000 0012345899999999999999999876421 122333222110
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC-----------CHh---hHHHhhcccc--cCC
Q 047894 238 VLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-----------DYS---LWVDLKAPFL--AAE 301 (1087)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~--~~~ 301 (1087)
. . ...........+......++.+|+|||++.- ... ....+...+. ...
T Consensus 90 ~--------------~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 K--------------F-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp C--------------S-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred h--------------c-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0 0 0011111222233333456789999999431 111 1111222111 122
Q ss_pred CCcEEEEEcCCccccc-cc----CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCC-chhHHHH
Q 047894 302 PNSKMIVTTRNSNVAS-TM----GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGG-LALAAKT 375 (1087)
Q Consensus 302 ~~s~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~ 375 (1087)
.+..||.||....... .. .-...+.++..+.++..+++...+...... .... ...|++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCC----HHHHHHHcCCCCHHHHHH
Confidence 3567777777543222 11 112468899999999999998876432211 1111 2457777777 4544444
Q ss_pred H
Q 047894 376 L 376 (1087)
Q Consensus 376 ~ 376 (1087)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 174
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.10 E-value=2.6e-05 Score=85.17 Aligned_cols=179 Identities=18% Similarity=0.135 Sum_probs=103.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+++... ...+.++.+.. ... ..+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~-~~~-~i~~~ 92 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDC-KID-FVRGP 92 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTC-CHH-HHHTH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEccccc-CHH-HHHHH
Confidence 568999999999999997543 235678888999999999999987632 12344554432 121 12221
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC-HhhHHHhhcccccCCCCcEEEEEcCCcc-ccccc-CCC
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED-YSLWVDLKAPFLAAEPNSKMIVTTRNSN-VASTM-GPI 322 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~~s~ilvTtr~~~-v~~~~-~~~ 322 (1087)
+....... ...+++-+||+||++.-. ......+...+.....+.++|+||.... +...+ ...
T Consensus 93 ~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 21111100 013477899999997654 4445555544433334567888776543 11111 111
Q ss_pred ceeeCCCCChHhHHHHH-------HHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHH
Q 047894 323 EHYNLKSLSDDDCWSIF-------IKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKT 375 (1087)
Q Consensus 323 ~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 375 (1087)
..+.+++++.++-.+++ ...+......-.. .++...|++.++|.+-.+..
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHHH
Confidence 46899999988743332 2222111111111 25667788999887775443
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=1.5e-05 Score=92.72 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHHhcCC-----------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC
Q 047894 166 PEVFGREEDKAKILDMVLADT-----------PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD 234 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~-----------~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 234 (1087)
.+++|++..++++.+++.... ..+.+..+.+.|+|++|+||||+|+.+++... + ..+.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----C-CEEEEeCCC
Confidence 569999999999999987511 00001346889999999999999999988641 1 234455554
Q ss_pred cccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCH---hhHHHhhcccccCCCCcEEEEEcC
Q 047894 235 VFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY---SLWVDLKAPFLAAEPNSKMIVTTR 311 (1087)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~~~~s~ilvTtr 311 (1087)
..... +....+........-..-...... .....+++.+||+|+++.-.. ..+..+...+.. .+..||+++.
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred cchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 43332 222222211111000000000000 001235778999999954321 122333333222 2344555554
Q ss_pred Ccc---cccccCCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch-hHHHHHH
Q 047894 312 NSN---VASTMGPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA-LAAKTLG 377 (1087)
Q Consensus 312 ~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~ 377 (1087)
... +.........+.+++++.++..+++...+......-. .++...|++.++|.+ -++..+.
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 322 2221122356899999999999998876643222111 234567899999954 4555443
No 176
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.09 E-value=1.2e-05 Score=89.91 Aligned_cols=199 Identities=16% Similarity=0.113 Sum_probs=105.4
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC----cccH
Q 047894 166 PEVFGREEDKAK---ILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD----VFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~----~~~~ 238 (1087)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++...... . .+.+.... ....
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~~~-~---~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGPDT-P---FTAIAGSEIFSLEMSK 115 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCSSC-C---EEEEEGGGGSCSSSCH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcccC-C---cccccchhhhhcccch
Confidence 469999988776 455554432 2235789999999999999999988653111 1 12222111 1222
Q ss_pred HHHHHHHHHHhhc---------------------CCC-------C--cccHHHHHHHHHHhh-----CCC----ceEEEE
Q 047894 239 LGISKALLESITS---------------------AAS-------D--LKTLNEVQVQLKKAV-----DGK----RFLLVL 279 (1087)
Q Consensus 239 ~~~~~~i~~~l~~---------------------~~~-------~--~~~~~~~~~~l~~~l-----~~k----r~LlVl 279 (1087)
.+...+....... ... . ......+...+.+.. .++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 2233333222110 000 0 000112222222111 233 459999
Q ss_pred ecCCCCCHhhHHHhhcccccCCCCcEEEEEcC-Cc------------ccccc-cCCCceeeCCCCChHhHHHHHHHhhcC
Q 047894 280 DDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTR-NS------------NVAST-MGPIEHYNLKSLSDDDCWSIFIKHVFE 345 (1087)
Q Consensus 280 Ddv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr-~~------------~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~ 345 (1087)
|++..-.......+...+...... .++++|. .. .+... ......+.+++++.++..+++...+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999776655556555554433222 3444443 11 01000 111135789999999999999887643
Q ss_pred CCCCCcchhhHHHHHHHHHHhC-CchhHHHHHH
Q 047894 346 SRDLNAHQISESFRKKVVAKCG-GLALAAKTLG 377 (1087)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~~c~-g~PLai~~~~ 377 (1087)
... ....++...|++.+. |.|-.+..+.
T Consensus 275 ~~~----~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 275 EDV----EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TTC----CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCC----CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 221 123456677888887 8777655443
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=2.3e-05 Score=87.00 Aligned_cols=197 Identities=13% Similarity=0.093 Sum_probs=106.5
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc-ccccc--CCCe---------------
Q 047894 166 PEVFGREEDKAKILDMV-LADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK-AVRDS--KFDV--------------- 226 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l-~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~-~~~~~--~f~~--------------- 226 (1087)
..++|.+..++.+.+++ ... .... +.|+|++|+||||+|+.+++.. ....+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46899999888888877 332 1223 8999999999999999887732 10000 0110
Q ss_pred -----EEEEEeCCcc-cHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccC
Q 047894 227 -----KAWVCVSDVF-DVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA 300 (1087)
Q Consensus 227 -----~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 300 (1087)
.+.+..+... ......++++..+..... ..... .+. .+.+++-++|+|++..-+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0111111100 000012222222211000 00000 000 02346779999999876665566666555444
Q ss_pred CCCcEEEEEcCCc-cccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhh-HHHHHHHHHHhCCchhHHHHHH
Q 047894 301 EPNSKMIVTTRNS-NVASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQIS-ESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 301 ~~~s~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~-~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
..+..+|++|... .+...+ .....+.+++++.++..+++...+...+. ... ++....|++.++|.+-.+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI----QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567777777653 222211 22257899999999999999887632211 111 3456779999999988665544
Q ss_pred h
Q 047894 378 G 378 (1087)
Q Consensus 378 ~ 378 (1087)
.
T Consensus 238 ~ 238 (354)
T 1sxj_E 238 E 238 (354)
T ss_dssp T
T ss_pred H
Confidence 3
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.03 E-value=4.8e-05 Score=80.66 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=99.1
Q ss_pred ccccchhhHHHHHH-------HHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 167 EVFGREEDKAKILD-------MVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~-------~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
.++|.....+++.+ .+..... .....+.|+|++|+|||++|+.+++... ... +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~---~~~~~vLl~G~~GtGKT~la~~ia~~~~-----~~~-~~i~~~~~---- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDR---TPLVSVLLEGPPHSGKTALAAKIAEESN-----FPF-IKICSPDK---- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSS---CSEEEEEEECSTTSSHHHHHHHHHHHHT-----CSE-EEEECGGG----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCC---CCCeEEEEECCCCCcHHHHHHHHHHHhC-----CCE-EEEeCHHH----
Confidence 46777776666655 3322111 4557899999999999999999988632 221 22222211
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC---------CHhhH-HHhhcccc---cCCCCcEE
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE---------DYSLW-VDLKAPFL---AAEPNSKM 306 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~-~~l~~~l~---~~~~~s~i 306 (1087)
+.. .........+...+......+..+|+|||++.- ....+ ..+...+. +......|
T Consensus 101 ---------~~g-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIG-FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTT-CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcC-CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 000 000001112223333444567889999997431 01112 22222221 12223446
Q ss_pred EEEcCCcccccc---cCC-CceeeCCCCCh-HhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCC------chhHHHH
Q 047894 307 IVTTRNSNVAST---MGP-IEHYNLKSLSD-DDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGG------LALAAKT 375 (1087)
Q Consensus 307 lvTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g------~PLai~~ 375 (1087)
|.||........ .+. ...+.++++++ ++...++.... . ...+....|++.+.| ..-++..
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-----~~~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-----FKDKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-----SCHHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-----CCHHHHHHHHHHhcCCCccccHHHHHHH
Confidence 667766533221 111 34688999988 66666665421 1 113455678888888 3344444
Q ss_pred HHhhhcCCCHHHHHHHHh
Q 047894 376 LGGLLRTTRHDAWDDILE 393 (1087)
Q Consensus 376 ~~~~l~~~~~~~w~~~~~ 393 (1087)
+-..........+..++.
T Consensus 242 l~~a~~~~~~~~~~~~~~ 259 (272)
T 1d2n_A 242 IEMSLQMDPEYRVRKFLA 259 (272)
T ss_dssp HHHHTTSCGGGHHHHHHH
T ss_pred HHHHhhhchHHHHHHHHH
Confidence 333322223444555544
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.02 E-value=7.3e-05 Score=81.67 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=104.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-------------------cCCCeEEEEE
Q 047894 171 REEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-------------------SKFDVKAWVC 231 (1087)
Q Consensus 171 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~ 231 (1087)
.++..+.+...+.... ....+.++|+.|+|||++|+.+.+...-.. .+++. .++.
T Consensus 7 ~~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~ 80 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLA 80 (334)
T ss_dssp GHHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEEC
T ss_pred hHHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEe
Confidence 3456677777776542 234788999999999999999876532110 12332 2222
Q ss_pred eCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHh----hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEE
Q 047894 232 VSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMI 307 (1087)
Q Consensus 232 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~il 307 (1087)
... .......++....+... ..+++-++|+|+++.-.......+...+.....++.+|
T Consensus 81 ~~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 81 PEK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CCT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred ccc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 210 00111222222221111 13567899999997766556666666665444567777
Q ss_pred EEcCCcc-ccccc-CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 308 VTTRNSN-VASTM-GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 308 vTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
++|...+ +...+ .....+.++++++++..+++.... . ...+.+..+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-----~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-----MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-----CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-----CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 7666542 32221 222579999999999999988764 1 113455679999999998776544
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.02 E-value=6.9e-05 Score=79.03 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=97.3
Q ss_pred CccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVL---ADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~---~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
..++|.+..++.+.+++. .... .+....+.+.|+|++|+|||++|+.+++.... . .+.+..+...+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~---~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV---P---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---C---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C---EEEechHHHHhh-
Confidence 458999988877766543 2110 00023356789999999999999999885321 1 234444332110
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC------------H---hhHHHhhccccc--CCC
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED------------Y---SLWVDLKAPFLA--AEP 302 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~ 302 (1087)
........+...+.......+.+|+|||++.-. . .....+...+.. ...
T Consensus 79 --------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 --------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp --------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred --------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 000111122223333334567899999996431 0 111222222221 123
Q ss_pred CcEEEEEcCCcccc-ccc-C---CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh-HHHHH
Q 047894 303 NSKMIVTTRNSNVA-STM-G---PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL-AAKTL 376 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~ 376 (1087)
+..||.||...... ... . -...+.++..+.++-.+++...+....... ........+++.+.|.+- .+..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ---SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB---THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc---chhhHHHHHHHHCCCCCHHHHHHH
Confidence 45666666543321 111 1 124678899999999999887664322111 112234678888888654 44443
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.97 E-value=3.9e-05 Score=83.20 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=89.3
Q ss_pred ccccchhhHHHHHHHHhcCC---------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCccc
Q 047894 167 EVFGREEDKAKILDMVLADT---------PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFD 237 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~---------~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 237 (1087)
.++|.+..++.+.+++.... -........+.|+|++|+|||++|+.+++...... .....-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG-YVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT-SSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CcCCCcEEEEcHH--
Confidence 47888888888876654210 00002345689999999999999998877643221 2111123333311
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC---------CHhhHHHhhcccccCCCCcEEEE
Q 047894 238 VLGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE---------DYSLWVDLKAPFLAAEPNSKMIV 308 (1087)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~~s~ilv 308 (1087)
. +.... ...........+... +.-+|+||+++.- .......+...+.....+..||+
T Consensus 109 --~--------l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 --D--------LVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp --G--------TCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred --H--------hhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 00000 011111222222222 3459999999632 33444555555554555678888
Q ss_pred EcCCcc----------cccccCCCceeeCCCCChHhHHHHHHHhhc
Q 047894 309 TTRNSN----------VASTMGPIEHYNLKSLSDDDCWSIFIKHVF 344 (1087)
Q Consensus 309 Ttr~~~----------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 344 (1087)
||.... +...+ ...+.+++++.++...++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 875432 22221 15789999999999999987764
No 182
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.87 E-value=2.2e-05 Score=73.94 Aligned_cols=114 Identities=17% Similarity=0.028 Sum_probs=69.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALL 246 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 246 (1087)
.++|+...+.++.+.+...... ..-|.|+|.+|+|||++|+.+++.....+..| + +..+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~----~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET----DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC----CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc--------
Confidence 4789999999998887543221 13478999999999999999988643222122 2 555543221
Q ss_pred HHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC
Q 047894 247 ESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN 312 (1087)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~ 312 (1087)
.... ..+... +.-.|+||+++.-.......+...+.......+||.||..
T Consensus 66 ----------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0111 111111 2347899999777655556666555444456678877764
No 183
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.85 E-value=0.00024 Score=77.21 Aligned_cols=186 Identities=15% Similarity=0.071 Sum_probs=101.4
Q ss_pred CccccchhhHHHHHHHHhc-------CCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLA-------DTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~-------~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..++|.+..++.|.+++.. ..... ...+-|.++|++|+|||++|+.+++... . .| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~--~-~~---~~v~~~----- 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVATEAN--S-TF---FSVSSS----- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC-CCCCEEEEECSSSSCHHHHHHHHHHHHT--C-EE---EEEEHH-----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHHC--C-CE---EEEchH-----
Confidence 5689999999999887731 01111 2345789999999999999999988632 1 21 223221
Q ss_pred HHHHHHHHHHhhcCCCCcccHHH-HHHHHHHhhCCCceEEEEecCCCCCH-----------hhHHHhhcccc---cCCCC
Q 047894 239 LGISKALLESITSAASDLKTLNE-VQVQLKKAVDGKRFLLVLDDVWNEDY-----------SLWVDLKAPFL---AAEPN 303 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~~ 303 (1087)
.+. ... ....+. +...+...-..++.+|+||++..-.. .....+...+. ....+
T Consensus 86 -~l~----~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 -DLV----SKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HHH----TTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HHh----hcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 110 000 011111 12222223345678999999953210 11222222221 22344
Q ss_pred cEEEEEcCCccccc-cc--CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCC-chhHHHHHHh
Q 047894 304 SKMIVTTRNSNVAS-TM--GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGG-LALAAKTLGG 378 (1087)
Q Consensus 304 s~ilvTtr~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~~~~ 378 (1087)
..||.||....... .+ .-...+.++..+.++-.+++...+....... .......|++.+.| .+-.|..+..
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL----TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC----CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC----CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55665666432211 11 1224678888999999999988764322111 12345678888887 4545554443
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.85 E-value=0.00056 Score=74.02 Aligned_cols=189 Identities=14% Similarity=0.112 Sum_probs=100.6
Q ss_pred CccccchhhHHHHHHHHhcC----C--CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVLAD----T--PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~----~--~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
..++|.++.++.|.+.+... . .......+.|.++|++|+|||++|+.+++... + ...+.++.+...+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~---~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--N---STFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--S---CEEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--C---CcEEEEEhHHHHh--
Confidence 46899999988888776311 0 00012346789999999999999999998641 1 1123333332211
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC-------HhhH----HHhhccccc---CCCCcE
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED-------YSLW----VDLKAPFLA---AEPNSK 305 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~~----~~l~~~l~~---~~~~s~ 305 (1087)
.. .......+...+...-..++.+|+||+++.-. .... ..+...+.. ...+..
T Consensus 85 ------------~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 ------------KW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ------------SS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ------------hh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 00 01111222222222334577899999995420 0011 112211111 123445
Q ss_pred EEEEcCCcccc-ccc--CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCc-hhHHHHHHh
Q 047894 306 MIVTTRNSNVA-STM--GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGL-ALAAKTLGG 378 (1087)
Q Consensus 306 ilvTtr~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~~~ 378 (1087)
||.||...... ..+ .-...+.++..+.++-.+++.......... ........|++.+.|. +-.|..+..
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS----LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC----CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55555443211 111 222467888889998888888766322111 1234556788999886 444555544
No 185
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.81 E-value=4.2e-05 Score=75.29 Aligned_cols=121 Identities=20% Similarity=0.162 Sum_probs=65.3
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhh
Q 047894 171 REEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESIT 250 (1087)
Q Consensus 171 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 250 (1087)
.++..+.+.+++.+-.. .....+.|+|++|+||||||+.+++...... .+ .++++ +..++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~-~~~~~------~~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GI-RGYFF------DTKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CC-CCCEE------EHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CC-eEEEE------EHHHHHHHHHHHhc
Confidence 44555666665544322 2235789999999999999999988653221 11 12333 33444444444433
Q ss_pred cCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHH--Hhhccccc-CCCCcEEEEEcCC
Q 047894 251 SAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWV--DLKAPFLA-AEPNSKMIVTTRN 312 (1087)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~~s~ilvTtr~ 312 (1087)
..... .....+. +.-+|||||++......|. .+...+.. ...|..||+||..
T Consensus 88 ~~~~~-----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 88 EGKDT-----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HTCCS-----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CchHH-----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 22111 1222221 4569999999743323333 22222211 1246788888874
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.79 E-value=0.00019 Score=78.22 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=92.6
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCC
Q 047894 174 DKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAA 253 (1087)
Q Consensus 174 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 253 (1087)
....+..+..... .....+.|+|++|+||||||+.+++.....+ ...++++.. .+...+...+...
T Consensus 22 a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~~~~~~---~~~~~i~~~------~~~~~~~~~~~~~- 87 (324)
T 1l8q_A 22 AYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSAD------DFAQAMVEHLKKG- 87 (324)
T ss_dssp HHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEHH------HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEHH------HHHHHHHHHHHcC-
Confidence 3444555544332 1234689999999999999999998643211 123455432 2333343333221
Q ss_pred CCcccHHHHHHHHHHhhCCCceEEEEecCCCCCH--hhHHHhhccccc-CCCCcEEEEEcCCccc---------ccccCC
Q 047894 254 SDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY--SLWVDLKAPFLA-AEPNSKMIVTTRNSNV---------ASTMGP 321 (1087)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~~s~ilvTtr~~~v---------~~~~~~ 321 (1087)
...... ..+ .+.-+|++||+..-.. .....+...+.. ...+..||+||..... ...+..
T Consensus 88 ----~~~~~~----~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~ 158 (324)
T 1l8q_A 88 ----TINEFR----NMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEG 158 (324)
T ss_dssp ----CHHHHH----HHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHT
T ss_pred ----cHHHHH----HHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccC
Confidence 112222 222 2367999999955332 122233332211 1245678887764321 112222
Q ss_pred CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhH
Q 047894 322 IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALA 372 (1087)
Q Consensus 322 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 372 (1087)
...+.+++ +.++...++...+..... ...+++...|++.+ |..-.
T Consensus 159 ~~~i~l~~-~~~e~~~il~~~~~~~~~----~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 159 GILVEIEL-DNKTRFKIIKEKLKEFNL----ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp SEEEECCC-CHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHC-SSHHH
T ss_pred ceEEEeCC-CHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHhC-CCHHH
Confidence 34689999 999999999887643221 12244566788888 76654
No 187
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.77 E-value=0.00032 Score=77.17 Aligned_cols=188 Identities=14% Similarity=0.074 Sum_probs=99.3
Q ss_pred CccccchhhHHHHHHHHhcC----C--CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVLAD----T--PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~----~--~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
..++|.+..++.|.+.+... . .......+-|.++|++|+|||++|+.+++.... . .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS---T---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC---E---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---C---EEEeeHH------
Confidence 46899999999998876311 0 000022345789999999999999999986421 1 1223221
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHh-----------hHHHhhcccc---cCCCCcE
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYS-----------LWVDLKAPFL---AAEPNSK 305 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~~s~ 305 (1087)
.+. ... . ......+...+......++.+|+||+++.-... ....+...+. ....+..
T Consensus 119 ~l~----~~~----~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DLV----SKW----M-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HHH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HHh----hhh----c-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 111 100 0 011112222222233457889999999542210 0122222221 1123455
Q ss_pred EEEEcCCcc-ccccc--CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCC-chhHHHHHHh
Q 047894 306 MIVTTRNSN-VASTM--GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGG-LALAAKTLGG 378 (1087)
Q Consensus 306 ilvTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~~~~ 378 (1087)
||.||.... +...+ .-...+.++..+.++-.+++...+...... ........|++.+.| .+-.|..+..
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV----LTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC----CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 565665432 11111 222467888889999999998776432211 113345678899988 4545555443
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=0.00018 Score=78.92 Aligned_cols=184 Identities=13% Similarity=0.153 Sum_probs=104.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCC-eEEEEEeCCcccHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFD-VKAWVCVSDVFDVLGISKA 244 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 244 (1087)
..++|.+..++.+..++.... ...+.++|++|+||||+|+.+++..... .+. ...-++.+.......+ ++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~i-r~ 95 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIYGK--NYSNMVLELNASDDRGIDVV-RN 95 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHHTT--SHHHHEEEECTTSCCSHHHH-HT
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHcCC--CccceEEEEcCcccccHHHH-HH
Confidence 457898888888888886532 1227899999999999999998763211 111 1122222221111111 11
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc-ccccc-CCC
Q 047894 245 LLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN-VASTM-GPI 322 (1087)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~-v~~~~-~~~ 322 (1087)
.+..+.... ....+.+-++|+|++..-.......+...+......+.+|++|.... +...+ ...
T Consensus 96 ~i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 96 QIKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 111111000 00123467899999966555555555554443345567777665432 11111 112
Q ss_pred ceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 323 EHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 323 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
..+.+.+++.++..+.+...+-.... ....+..+.|++.++|.+--+..+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~----~i~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKL----KLSPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC----CBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 46889999999998888776532211 122345678999999988754433
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.76 E-value=0.00037 Score=76.83 Aligned_cols=187 Identities=13% Similarity=0.085 Sum_probs=101.1
Q ss_pred CccccchhhHHHHHHHHhcC----CC--CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVLAD----TP--RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~----~~--~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
..++|.+..++.+.+++... .. ......+.|.|+|++|+|||++|+.+++... ...+.++.+.....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG------ATFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT------CEEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC------CeEEEEehHHhhcc-
Confidence 46899999999998877421 00 0002345789999999999999999987532 12234444322110
Q ss_pred HHHHHHHHHhhcCCCCcccHHH-HHHHHHHhhCCCceEEEEecCCCC-----------CHhhHHHhhccccc----CCCC
Q 047894 240 GISKALLESITSAASDLKTLNE-VQVQLKKAVDGKRFLLVLDDVWNE-----------DYSLWVDLKAPFLA----AEPN 303 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~----~~~~ 303 (1087)
. ...... ....+...-..++.+|+||+++.- .......+...+.. ...+
T Consensus 157 -------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 157 -------------W--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -------------S--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -------------c--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 001111 111222222356789999998321 00112222222221 1223
Q ss_pred cEEEEEcCCcc-ccccc--CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCC-chhHHHHHHh
Q 047894 304 SKMIVTTRNSN-VASTM--GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGG-LALAAKTLGG 378 (1087)
Q Consensus 304 s~ilvTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~~~~ 378 (1087)
..||.||.... +...+ .-...+.++..+.++..+++...+..... ....+....|++.+.| .+-.+..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC----CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC----CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45555665432 22111 11246788888999988888776633211 1123456778999988 5556665544
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.74 E-value=3.1e-05 Score=76.76 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++||+.+++.+.+.+.... ...+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999986532 2456899999999999999998764
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.69 E-value=0.0011 Score=71.14 Aligned_cols=186 Identities=11% Similarity=0.090 Sum_probs=97.9
Q ss_pred CccccchhhHHHHHHHHhcCC------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVLADT------PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~------~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
..++|.+..++.+.+++.... .......+.+.|+|++|+|||++|+.+++... ...+.++.+.....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~------~~~~~i~~~~l~~~- 93 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS------ATFLNISAASLTSK- 93 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT------CEEEEEESTTTSSS-
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeEEeeHHHHhhc-
Confidence 468999999999988774310 00001235789999999999999999987532 11233443322110
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHH-HHHHHhhCCCceEEEEecCCCCC-----------HhhHHHhhcc---cccC--CC
Q 047894 240 GISKALLESITSAASDLKTLNEVQ-VQLKKAVDGKRFLLVLDDVWNED-----------YSLWVDLKAP---FLAA--EP 302 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~---l~~~--~~ 302 (1087)
. ........ ..+......++.+|++|++..-. ......+... +... ..
T Consensus 94 -------------~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 94 -------------Y--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -------------S--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -------------c--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 01112222 22222234567899999984321 1111112211 1111 12
Q ss_pred CcEEEEEcCCcc-ccccc--CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh-HHHHHH
Q 047894 303 NSKMIVTTRNSN-VASTM--GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL-AAKTLG 377 (1087)
Q Consensus 303 ~s~ilvTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~ 377 (1087)
+..||.||.... +.... .-...+.++..+.++...++...+...... ...+....|++.+.|.+- ++..+.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP----LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC----SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345666666532 21111 112457777778888888877665322111 123455678889999776 554443
No 192
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=6.7e-06 Score=78.72 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=29.0
Q ss_pred CCCCccEEEEeccCCCccc-CCCCCCC----CCccEEEEecCCCCcccCC--CCCCCCcCeEEEccCCCCC
Q 047894 1006 SPVMLQLLRIENCRKLESI-PDGLPNL----KCLQSICIRKCPSLVSFPE--RGLPNTISAVYICECDKLE 1069 (1087)
Q Consensus 1006 ~l~~L~~L~l~~~~~~~~~-p~~l~~l----~~L~~L~l~~c~~l~~lp~--~~~~~sL~~L~i~~c~~l~ 1069 (1087)
.+++|++|++++|...+.- -..+..+ ++|++|++++|++++.-.- ....++|+.|+|++|+.++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 4455555556655433221 0112221 2456666666665542110 0112456666666665554
No 193
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.65 E-value=4.6e-06 Score=92.60 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=6.9
Q ss_pred CCCCCcCEEeecCCc
Q 047894 645 RNLINLNHLDIRGAK 659 (1087)
Q Consensus 645 ~~L~~L~~L~l~~~~ 659 (1087)
..+++|++|++++|.
T Consensus 180 ~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG 194 (372)
T ss_dssp HTCSSCCEEECTTSS
T ss_pred hcCCCcCEEeCCCCC
Confidence 344444444444443
No 194
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.64 E-value=0.00086 Score=73.10 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=94.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|.+..++.+...+......+ .....+.++|++|+||||||+.+++.... .|. ..+.+......
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---~~~---~~sg~~~~~~~------ 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRG-EVLDHVLLAGPPGLGKTTLAHIIASELQT---NIH---VTSGPVLVKQG------ 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTC---CEE---EEETTTCCSHH------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEE---EEechHhcCHH------
Confidence 457888877777766664321000 22356899999999999999999886421 111 11111111111
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccC--------C----------CCcEEE
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA--------E----------PNSKMI 307 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~----------~~s~il 307 (1087)
++...+ ..+ .++-++++|++..-.....+.+...+... . +...++
T Consensus 92 ---------------~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 92 ---------------DMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ---------------HHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ---------------HHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 111111 112 23457788887544332333332211110 0 011222
Q ss_pred -EEcCCcccccccCC--CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHH
Q 047894 308 -VTTRNSNVASTMGP--IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLG 377 (1087)
Q Consensus 308 -vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 377 (1087)
.|++...+...+.. ...+.+++.+.++-.+++.+.+..... ....+.+..|++.++|.|-.+..+.
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 34443333221111 124789999999999999887632211 2234567889999999998655443
No 195
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.0011 Score=74.50 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=27.2
Q ss_pred cccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccC-CCCCCCCCccEEEEec
Q 047894 982 NCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIP-DGLPNLKCLQSICIRK 1041 (1087)
Q Consensus 982 ~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~ 1041 (1087)
+|.+|+.+.+..+ ++......|.++++|+.+.|..+ ...+. ..|.++++|+++++.+
T Consensus 309 ~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 309 GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESS
T ss_pred CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECC
Confidence 3444444443322 22223344555666666666443 22332 3455666666666654
No 196
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.56 E-value=0.0002 Score=81.92 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=79.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc--cCC-C-eEEEEEeCCcccHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD--SKF-D-VKAWVCVSDVFDVLGI 241 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~s~~~~~~~~ 241 (1087)
..++||+.+++.+.+.+..... .-+.++|++|+|||++|+.+++...... ... + ..+.+..+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~------~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTK------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-------
Confidence 4599999999999999976432 2457999999999999999987642110 000 1 112222220
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCccccc----
Q 047894 242 SKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVAS---- 317 (1087)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~---- 317 (1087)
.... ........ .+...-..++.+|++|. .......+...+.. ...++|.+|.......
T Consensus 247 ------~~~g--~~e~~~~~---~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 247 ------KYRG--EFEDRLKK---VMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred ------cccc--hHHHHHHH---HHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 0000 00011222 22223345678999991 11222233333322 2356666665544211
Q ss_pred ---ccCCCceeeCCCCChHhHHHHHHHhh
Q 047894 318 ---TMGPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 318 ---~~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
.......+.+++.+.++...++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11112468999999999999998754
No 197
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=0.00038 Score=74.27 Aligned_cols=149 Identities=8% Similarity=0.028 Sum_probs=92.6
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc-ccccCCCeEEEEEeCC-cccHHHHHHHHHH
Q 047894 170 GREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA-VRDSKFDVKAWVCVSD-VFDVLGISKALLE 247 (1087)
Q Consensus 170 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~-~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~ 247 (1087)
|-++.++.+...+.... .....++|++|+||||+|+.+.+... ....+.+. .++..+. ...+.. .+++.+
T Consensus 1 g~~~~~~~L~~~i~~~~------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE------GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTCS------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHH
Confidence 34556677777776542 46889999999999999999976421 11113443 4444432 222222 233433
Q ss_pred HhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCC-cccccccCCCceee
Q 047894 248 SITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRN-SNVASTMGPIEHYN 326 (1087)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~-~~v~~~~~~~~~~~ 326 (1087)
.+.... ..+++-++|+|+++.-.....+.+...+....+.+.+|++|.. ..+...+... .++
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 332211 1355779999999777666777777766555556777776644 3444444444 899
Q ss_pred CCCCChHhHHHHHHHhh
Q 047894 327 LKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 327 l~~L~~~~~~~lf~~~~ 343 (1087)
++++++++..+++.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999988765
No 198
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=2.8e-05 Score=74.44 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=47.3
Q ss_pred CccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcccccCCCCCCCCEEEEecccCccccccccCCCCCCCCCCCC
Q 047894 926 NLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTFIARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPSSSS 1005 (1087)
Q Consensus 926 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~~~~ 1005 (1087)
+|++|++++|.+...--..+ ..+++|+.|++++|..+++.....+.. +. .
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~------------~~-----------------~ 111 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQ------------LE-----------------N 111 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHT------------CH-----------------H
T ss_pred eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHh------------cc-----------------c
Confidence 45555566555333222222 467777777777777665433111110 00 0
Q ss_pred CCCCccEEEEeccCCCccc-CCCCCCCCCccEEEEecCCCCcc
Q 047894 1006 SPVMLQLLRIENCRKLESI-PDGLPNLKCLQSICIRKCPSLVS 1047 (1087)
Q Consensus 1006 ~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~c~~l~~ 1047 (1087)
..++|++|+|++|...+.- -..+..+++|++|++++|+.++.
T Consensus 112 ~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 112 LQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred ccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 0134666666666533221 12345567777777777777764
No 199
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.53 E-value=7.7e-05 Score=70.00 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=62.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALL 246 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 246 (1087)
.++|++..++++.+.+...... ..-|.|+|.+|+|||++|+.+++... -++.+....-.....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~----~~~vll~G~~GtGKt~lA~~i~~~~~---------~~~~~~~~~~~~~~~---- 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR----TSPVFLTGEAGSPFETVARYFHKNGT---------PWVSPARVEYLIDMP---- 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC----SSCEEEEEETTCCHHHHHGGGCCTTS---------CEECCSSTTHHHHCH----
T ss_pred CceeCCHHHHHHHHHHHHHhCC----CCcEEEECCCCccHHHHHHHHHHhCC---------CeEEechhhCChHhh----
Confidence 5789999888888877542211 12478999999999999999987522 223332211111110
Q ss_pred HHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccC-CCCcEEEEEcCC
Q 047894 247 ESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA-EPNSKMIVTTRN 312 (1087)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~~s~ilvTtr~ 312 (1087)
...+. . .+.-.++||++..-.......+...+... ..+.+||+||..
T Consensus 68 ----------------~~~~~-~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 ----------------MELLQ-K--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHH-H--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhHHH-h--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 11111 1 12347899999877655555555444332 345678877753
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.53 E-value=0.00099 Score=71.43 Aligned_cols=181 Identities=13% Similarity=0.100 Sum_probs=96.0
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLADT-------PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~-------~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..++|.+..++++.+++...- .-+....+.|.++|++|+|||++|+.+++... . . ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~-~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--A-N-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C-E-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--C-C-----EEEEE----h
Confidence 468999999888888765310 00002235789999999999999999998632 1 1 22232 1
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC--------------HhhHHHhhccccc--CCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED--------------YSLWVDLKAPFLA--AEP 302 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~ 302 (1087)
..+.. ...... .. .....+.......+.+|++|++..-. ......+...+.. ...
T Consensus 83 ~~l~~----~~~g~~--~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLT----MWFGES--EA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHH----HHHTTC--TT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHh----hhcCch--HH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 22222 111111 11 12223333334567899999995310 0011222222221 123
Q ss_pred CcEEEEEcCCcc-cccc-cC---CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhH
Q 047894 303 NSKMIVTTRNSN-VAST-MG---PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALA 372 (1087)
Q Consensus 303 ~s~ilvTtr~~~-v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 372 (1087)
+..||.||.... +... .. -...+.++..+.++-.+++......... ...... ..+++.+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 456666766543 2221 12 2246889999999888888776533211 111112 3466677776644
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.51 E-value=0.00081 Score=76.34 Aligned_cols=189 Identities=13% Similarity=0.150 Sum_probs=99.5
Q ss_pred CccccchhhHHHHHHHHhcC----CC--CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVLAD----TP--RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~----~~--~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
..++|.+..++.+.+.+... .. ......+.|.++|++|+|||+||+.+++... . .-++.++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~-----~~~~~v~~~---- 202 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--N-----STFFSISSS---- 202 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--S-----SEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--C-----CCEEEEeHH----
Confidence 56899999999998876310 00 0002346789999999999999999998641 1 122333322
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCH-----------hhHHHhhccccc---CCCCcE
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY-----------SLWVDLKAPFLA---AEPNSK 305 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~~s~ 305 (1087)
.+.... .+. .......+. ...-..++.+|+||+++.-.. .....+...+.. ...+..
T Consensus 203 ~l~~~~---~g~---~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 203 DLVSKW---LGE---SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred HHHhhh---cch---HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 111110 010 111222222 222235678999999964310 111222222221 234456
Q ss_pred EEEEcCCccccc-cc--CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCc-hhHHHHHHh
Q 047894 306 MIVTTRNSNVAS-TM--GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGL-ALAAKTLGG 378 (1087)
Q Consensus 306 ilvTtr~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~~~ 378 (1087)
||.||....... .+ .-...+.++..+.++...+|...+..... .........|++.+.|. +-.|..+..
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666665432211 11 11246778888888888888877632211 11233456788899884 445555443
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.51 E-value=0.0019 Score=72.08 Aligned_cols=188 Identities=11% Similarity=0.092 Sum_probs=98.2
Q ss_pred CCccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 165 EPEVFGREEDKAKILDMVLADTP------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
-..++|.+..++.+.+++..... ......+.|.|+|++|+|||++|+.+++... ...+.++.+.....
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~------~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN------ATFFNISAASLTSK 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEECSCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc------CcEEEeeHHHhhcc
Confidence 35799999999999888732100 0001235789999999999999999987532 11233333322110
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC-----------HhhHHHhhccccc----CCCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED-----------YSLWVDLKAPFLA----AEPN 303 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~~ 303 (1087)
.. ......+...+...-..++.+|+||+++.-. ......+...+.. ....
T Consensus 188 --~~-------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 --YV-------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred --cc-------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 00 0011111222222223456799999994320 0111122222211 1223
Q ss_pred cEEEEEcCCcc-ccccc-C-CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh-HHHHHH
Q 047894 304 SKMIVTTRNSN-VASTM-G-PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL-AAKTLG 377 (1087)
Q Consensus 304 s~ilvTtr~~~-v~~~~-~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~ 377 (1087)
..||.||.... +...+ . -...+.++..+.++..+++...+..... ....+....|++.+.|..- ++..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45555665432 21111 1 1135788999999999999877633221 1223455778899988554 555543
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.48 E-value=0.00014 Score=90.13 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=79.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc--cCC-C-eEEEEEeCCcccHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD--SKF-D-VKAWVCVSDVFDVLGI 241 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~s~~~~~~~~ 241 (1087)
..++||+++++++.+.+..... .-+.++|.+|+|||++|+.+++...... ... . ..+++.++....
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~------~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTK------NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSC------CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 4589999999999999976432 2368999999999999999987642110 001 1 223333322100
Q ss_pred HHHHHHHhhcCCCCcccHHH-HHHHHHHhhC-CCceEEEEecCCCCCH-----hhHH---HhhcccccCCCCcEEEEEcC
Q 047894 242 SKALLESITSAASDLKTLNE-VQVQLKKAVD-GKRFLLVLDDVWNEDY-----SLWV---DLKAPFLAAEPNSKMIVTTR 311 (1087)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~~-----~~~~---~l~~~l~~~~~~s~ilvTtr 311 (1087)
. ......... +...+...-. +++.+|++|++..-.. ..|+ .+...+ .. .+..+|.+|.
T Consensus 240 ---------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEEC
T ss_pred ---------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecC
Confidence 0 000011222 2222222222 4678999999954320 0011 122222 12 2344555554
Q ss_pred Cccc-----cc-ccCCCceeeCCCCChHhHHHHHHHh
Q 047894 312 NSNV-----AS-TMGPIEHYNLKSLSDDDCWSIFIKH 342 (1087)
Q Consensus 312 ~~~v-----~~-~~~~~~~~~l~~L~~~~~~~lf~~~ 342 (1087)
.... .. .......+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 3221 11 1112245889999999999998654
No 204
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.47 E-value=0.00078 Score=76.88 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=99.1
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..++|.+..++++.+++..... -+....+-|.|+|++|+|||++|+.+++... . . .+.++.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~-~---fv~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A-F---FFLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S-E---EEEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C-C---EEEEEchH----
Confidence 4589999999999887753200 0002234689999999999999999987532 1 2 23333211
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC--------C---HhhHHHhhccccc--CCCCcE
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE--------D---YSLWVDLKAPFLA--AEPNSK 305 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~---~~~~~~l~~~l~~--~~~~s~ 305 (1087)
+ ...+ ...........+.....+++.+|+||+++.- . ......+...+.. ...+..
T Consensus 274 --l----~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 --I----MSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp --H----HTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred --h----hhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1 1000 0111222333444445567789999998211 1 0111223322221 223445
Q ss_pred EEEEcCCcc-ccccc----CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCc-hhHHHHH
Q 047894 306 MIVTTRNSN-VASTM----GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGL-ALAAKTL 376 (1087)
Q Consensus 306 ilvTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~ 376 (1087)
||.||.... +...+ .-...+.+...+.++-.+++..++..... ..... ..++++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 555665442 22222 12246889999999999999877632211 11112 24577777774 4444444
No 205
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.46 E-value=2.7e-05 Score=85.48 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=27.5
Q ss_pred CCCCCcccEEEeccCCCCCCCCcCCcccCcccEEeeeCCCCCC-CCCCC--CCcCCcceeecc
Q 047894 757 QPHKCIKKVAIRNYGGARFPLWIGDPLFCKIELLELENCDNCV-SLPSL--GRLSSLKHLAVK 816 (1087)
Q Consensus 757 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~~l--~~l~~L~~L~L~ 816 (1087)
.++++|++|.++++.+..++. + ..++|+.|++..|.+.. .+..+ ..+|+|++|+|+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~---~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C---BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCceecc-c---cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 445666666666653333333 1 14566666666554321 11111 245566666553
No 206
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.46 E-value=0.0067 Score=67.95 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=55.8
Q ss_pred EecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccC-CCCCCCCCccEEEEecCCCCcccCCCCCC--CC
Q 047894 980 IENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIP-DGLPNLKCLQSICIRKCPSLVSFPERGLP--NT 1056 (1087)
Q Consensus 980 l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~c~~l~~lp~~~~~--~s 1056 (1087)
+.+|.+|+.+.+. +.++......|.++++|+.+.|.++ ...+. ..|.++++|+++.|.+ .++.++...|- ++
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTA 358 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTT
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCC
Confidence 3456666666553 2344444556777777888777654 33443 4577778888888764 46777665443 57
Q ss_pred cCeEEEccCCCCCCCCCCCCCCCCCCcEEe
Q 047894 1057 ISAVYICECDKLEAPPNDMHKLNSLQSLSI 1086 (1087)
Q Consensus 1057 L~~L~i~~c~~l~~~p~~l~~l~~L~~l~i 1086 (1087)
|+.+++.++... ...+..+++|+.+.+
T Consensus 359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 359 LNNIEYSGSRSQ---WNAISTDSGLQNLPV 385 (394)
T ss_dssp CCEEEESSCHHH---HHTCBCCCCC-----
T ss_pred CCEEEECCceee---hhhhhccCCCCEEEe
Confidence 777777654211 123445556665544
No 207
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.45 E-value=0.00015 Score=72.93 Aligned_cols=119 Identities=26% Similarity=0.257 Sum_probs=61.9
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcC
Q 047894 173 EDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSA 252 (1087)
Q Consensus 173 ~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 252 (1087)
..++.+.+++...... .....+.|+|++|+|||+||+.+++.... ....++|++++ .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVYVP------ELFRELKHSLQD- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEEHH------HHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEhH------HHHHHHHHHhcc-
Confidence 3455666666543221 12257899999999999999999987542 22345566543 333333332211
Q ss_pred CCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHH--hhccccc-C-CCCcEEEEEcCC
Q 047894 253 ASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVD--LKAPFLA-A-EPNSKMIVTTRN 312 (1087)
Q Consensus 253 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~-~~~s~ilvTtr~ 312 (1087)
.........+.+ .-+|||||++......|.. +...+.. . ..+.++|+||..
T Consensus 104 ----~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112222223321 2499999996654333322 2211111 1 245678888874
No 208
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.43 E-value=8e-05 Score=77.22 Aligned_cols=59 Identities=27% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCCcccEEEecCCCCccc---CccccCCccceeeccCCCcCcccccccccCC--CCcEEEecCCC
Q 047894 576 KFKRLRMLSLQGYCIGEL---PIPFEELRLLRFLNLADIDIKSLPESTCKLL--NLEILILRNCS 635 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~ 635 (1087)
++++|++|+|++|.+..+ |..++.+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 445556666665555433 23344555555555555555544 2233333 55555555544
No 209
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.39 E-value=0.00012 Score=80.47 Aligned_cols=167 Identities=14% Similarity=0.107 Sum_probs=86.9
Q ss_pred CCCCccEEEEeecCCccccCCCCCcccEEEe-ccCCCcCCccEEEeccCCCCCCCchhhhcCCCCCceEEeccCCCCcc-
Q 047894 888 LLPSLETLVVSKCGKLVVPLSCYPMLCRLEV-DECKELANLRSLLICNSTALKSLPEEMMENNSQLEKLYIRDCESLTF- 965 (1087)
Q Consensus 888 ~l~~L~~L~l~~~~~~~~~~~~~~~L~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~- 965 (1087)
.+++|+.|.|.+...-.... ..+..-.+ ..+..+++|+.|.+++|.... ++. + .+++|+.|++..|..-..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~i---s~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~--~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEI---SWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K--PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCG---GGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C--BCTTCSEEEEECSBCCHHH
T ss_pred hcchhhheeecCcchhhccc---ccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c--cCCCCcEEEEecCCCChHH
Confidence 46899999886642100000 00000001 112455688888888874332 232 2 378899999987762111
Q ss_pred ---cccCCCCCCCCEEEEecccCccccccccCCCCCCCCC-CCCCCCCccEEEEeccCCCcccCCCC---CCCCCccEEE
Q 047894 966 ---IARRRLPASLKRLEIENCEKLQRLFDDEGDASSSSPS-SSSSPVMLQLLRIENCRKLESIPDGL---PNLKCLQSIC 1038 (1087)
Q Consensus 966 ---~~~~~l~~~L~~L~l~~c~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~l---~~l~~L~~L~ 1038 (1087)
+....+ ++|+.|++..+.+...- ...+....+. ....+|+|++|++++|.+....+..+ ..+++|++|+
T Consensus 210 l~~l~~~~l-p~L~~L~L~~~~~~~~~---~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~Ld 285 (362)
T 2ra8_A 210 VEDILGSDL-PNLEKLVLYVGVEDYGF---DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285 (362)
T ss_dssp HHHHHHSBC-TTCCEEEEECBCGGGTC---CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEE
T ss_pred HHHHHHccC-CCCcEEEEecccccccc---chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEE
Confidence 000112 34666555421111000 0000000000 11357899999999998764332111 3578999999
Q ss_pred EecCCCCcc-----cCCC-CCCCCcCeEEEccCC
Q 047894 1039 IRKCPSLVS-----FPER-GLPNTISAVYICECD 1066 (1087)
Q Consensus 1039 l~~c~~l~~-----lp~~-~~~~sL~~L~i~~c~ 1066 (1087)
++. +.+.. ++.. ...++|+.|++++|.
T Consensus 286 Ls~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 286 ISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 976 56664 3332 224689999999885
No 210
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.003 Score=68.87 Aligned_cols=179 Identities=17% Similarity=0.101 Sum_probs=96.1
Q ss_pred CccccchhhHHHHHHHHhcC----C---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLAD----T---PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~----~---~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
.++.|-++.+++|.+.+.-+ + .-+...++-|.++|++|+|||.||+++++.... . .+.|..+...+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~---~---f~~v~~s~l~sk 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC---K---FIRVSGAELVQK 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC---E---EEEEEGGGGSCS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC---C---ceEEEhHHhhcc
Confidence 46788998888887765321 0 001133456889999999999999999986431 2 234444332110
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC--------H--hh----HHHhhccccc--CCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED--------Y--SL----WVDLKAPFLA--AEP 302 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~--~~----~~~l~~~l~~--~~~ 302 (1087)
........+...+...-...+.+|++|+++.-. . .. ...+...+.. ...
T Consensus 222 ---------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 222 ---------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ---------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ---------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 001111112222233334678999999985421 0 01 1112222221 223
Q ss_pred CcEEEEEcCCccccc-cc----CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 303 NSKMIVTTRNSNVAS-TM----GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
+-.||.||-..+..+ .+ .-...+.++..+.++-.++|..+.-.-. ...... ..+|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 445566665443322 11 2236788998888888888877653221 111112 245788888754
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0013 Score=72.84 Aligned_cols=53 Identities=25% Similarity=0.203 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 166 PEVFGREEDKAKILDMVLADT-------PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~-------~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.++.|-++.+++|.+.+.-.- .-+...++-|.++|++|+|||++|+.+++...
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 468899998888877653210 00113446689999999999999999998643
No 212
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.30 E-value=4.7e-05 Score=84.43 Aligned_cols=84 Identities=14% Similarity=0.037 Sum_probs=44.3
Q ss_pred CCCcccEEEecCCCCcc-----cCccccCCccceeeccCCCcCcc-----cccccccCCCCcEEEecCCCCCc----ccC
Q 047894 576 KFKRLRMLSLQGYCIGE-----LPIPFEELRLLRFLNLADIDIKS-----LPESTCKLLNLEILILRNCSRLI----KLP 641 (1087)
Q Consensus 576 ~~~~Lr~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp 641 (1087)
....|++|+|++|.++. ++..+..++.|++|+|++|.|.. ++..+...++|++|+|++|.... .++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 34556666666665532 33334555566666666665542 24445555566666666654211 223
Q ss_pred cccCCCCCcCEEeecCCc
Q 047894 642 PKMRNLINLNHLDIRGAK 659 (1087)
Q Consensus 642 ~~i~~L~~L~~L~l~~~~ 659 (1087)
..+...++|++|++++|.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHCSSCCEEECTTSS
T ss_pred HHHHhCCCCCEEeccCCC
Confidence 334445566666666665
No 213
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.30 E-value=0.00063 Score=77.72 Aligned_cols=98 Identities=11% Similarity=0.005 Sum_probs=59.4
Q ss_pred eEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEc----------C----Cccccc-ccCCCceeeCCCCChHhHHHHH
Q 047894 275 FLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTT----------R----NSNVAS-TMGPIEHYNLKSLSDDDCWSIF 339 (1087)
Q Consensus 275 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTt----------r----~~~v~~-~~~~~~~~~l~~L~~~~~~~lf 339 (1087)
-++++|++..-+...+..+...+...... -+|+.| . ...+.. .......+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 39999999777767777777666543333 344343 2 101100 0111135799999999999999
Q ss_pred HHhhcCCCCCCcchhhHHHHHHHHHHh-CCchhHHHHHH
Q 047894 340 IKHVFESRDLNAHQISESFRKKVVAKC-GGLALAAKTLG 377 (1087)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~i~~~c-~g~PLai~~~~ 377 (1087)
..++-.... ...++....|++.+ +|.|..+..+.
T Consensus 376 ~~~~~~~~~----~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEGI----NISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHTC----CBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhCC----CCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 877632111 12344567788888 88887655543
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.29 E-value=3.8e-05 Score=79.61 Aligned_cols=103 Identities=20% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCcccE--EEecCCCCcccCc----cccCCccceeeccCCCcCcccc---cccccCCCCcEEEecCCCCCcccCcccCCC
Q 047894 577 FKRLRM--LSLQGYCIGELPI----PFEELRLLRFLNLADIDIKSLP---ESTCKLLNLEILILRNCSRLIKLPPKMRNL 647 (1087)
Q Consensus 577 ~~~Lr~--L~l~~~~i~~lp~----~i~~l~~L~~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 647 (1087)
.+.|.. ++++.|....++. ...++++|++|+|++|.|+.++ ..+.++++|++|+|++|. +..+. .+..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhc
Confidence 344444 4555554333322 1256889999999999998654 667899999999999986 55542 34444
Q ss_pred C--CcCEEeecCCccccccCc-------cCCCCCCCCccCeee
Q 047894 648 I--NLNHLDIRGAKLLKEMPC-------GMKELKKLRTLSNFI 681 (1087)
Q Consensus 648 ~--~L~~L~l~~~~~~~~~p~-------~i~~L~~L~~L~~~~ 681 (1087)
. +|++|++++|.....+|. -+..+++|+.|+...
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 4 999999999985444542 256778888886543
No 215
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.26 E-value=0.001 Score=71.94 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcC--CCC------CCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLAD--TPR------DHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~--~~~------~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++|.+..++.+...+... ... .......+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999998877541 000 00122457899999999999999998764
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0064 Score=67.52 Aligned_cols=179 Identities=14% Similarity=0.123 Sum_probs=95.9
Q ss_pred CccccchhhHHHHHHHHhcC----C---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLAD----T---PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~----~---~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
.++.|-++.+++|.+.+.-. . .-+...++-|.++|++|+|||+||+.+++.... . .+.+..+...+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~---~---~~~v~~s~l~sk 254 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA---N---FIFSPASGIVDK 254 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---E---EEEEEGGGTCCS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---C---EEEEehhhhccc
Confidence 46789998888887765321 0 001134567899999999999999999986431 2 234443332110
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC----------Hh----hHHHhhccccc--CCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED----------YS----LWVDLKAPFLA--AEP 302 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~----~~~~l~~~l~~--~~~ 302 (1087)
........+...+...-...+.+|++|+++.-. .. ....+...+.. ...
T Consensus 255 ---------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 255 ---------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ---------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ---------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 001111112222233334678999999995321 00 11122222221 223
Q ss_pred CcEEEEEcCCccccc-cc-CC---CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 303 NSKMIVTTRNSNVAS-TM-GP---IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~~-~~-~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
+..||.||-.....+ .+ .+ ...+.++..+.++-.++|..+...-... ....+ ..|++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCH----HHHHHhCCCCC
Confidence 456676766543322 11 22 2468888888888888887665332211 11122 45777887754
No 217
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.23 E-value=0.00046 Score=73.93 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3588999999998888765332 12357899999999999999998754
No 218
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.22 E-value=0.00013 Score=68.65 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=49.9
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAVDGK 273 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (1087)
..+.|+|..|+|||||++.++......+ + ..+++........ .+..+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g--~-~~~~~~~~~~~~~------------------------------~~~~~ 83 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAG--K-NAAYIDAASMPLT------------------------------DAAFE 83 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTT--C-CEEEEETTTSCCC------------------------------GGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcC--C-cEEEEcHHHhhHH------------------------------HHHhC
Confidence 4789999999999999999988654221 1 2456655432211 01134
Q ss_pred ceEEEEecCCCCCHhhHHHhhccccc-CCCCc-EEEEEcCC
Q 047894 274 RFLLVLDDVWNEDYSLWVDLKAPFLA-AEPNS-KMIVTTRN 312 (1087)
Q Consensus 274 r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~~s-~ilvTtr~ 312 (1087)
.-++||||+.......-..+...+.. ...|. .||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 56899999966443222222222211 11233 48888873
No 219
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.20 E-value=7.8e-05 Score=73.54 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=51.9
Q ss_pred hcccCCCCcccEEEecCC-CCcc-----cCccccCCccceeeccCCCcCc-----ccccccccCCCCcEEEecCCCCCc-
Q 047894 571 SDLLPKFKRLRMLSLQGY-CIGE-----LPIPFEELRLLRFLNLADIDIK-----SLPESTCKLLNLEILILRNCSRLI- 638 (1087)
Q Consensus 571 ~~~~~~~~~Lr~L~l~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~- 638 (1087)
..++...+.|+.|+|++| .++. +...+....+|++|+|++|.|. .+...+...++|++|+|++|..-.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344566666777777766 5532 3344555566777777777665 234445555667777777665211
Q ss_pred ---ccCcccCCCCCcCEEee--cCCc
Q 047894 639 ---KLPPKMRNLINLNHLDI--RGAK 659 (1087)
Q Consensus 639 ---~lp~~i~~L~~L~~L~l--~~~~ 659 (1087)
.+...+...++|++|++ ++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC
Confidence 13444555666777777 5555
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.19 E-value=0.0012 Score=71.30 Aligned_cols=121 Identities=12% Similarity=0.177 Sum_probs=65.8
Q ss_pred ccccchhhHHHHHHHHhcCC---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADT---PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISK 243 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~---~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 243 (1087)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.+++...... ...+.+..+...... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGGCCSTT-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeecccccccc-cHH
Confidence 46788888888888776531 11112346899999999999999999988643211 123455554332221 111
Q ss_pred HHHHHhhcCCC--CcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhccc
Q 047894 244 ALLESITSAAS--DLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPF 297 (1087)
Q Consensus 244 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l 297 (1087)
.+ ++.... .......+...+. ....-+++||++.......+..+...+
T Consensus 94 ~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred Hh---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 11 111111 1010012222222 123469999999776655555555444
No 221
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.19 E-value=0.0029 Score=77.69 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=86.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEE-EeCCcccHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWV-CVSDVFDVLGI 241 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv-~~s~~~~~~~~ 241 (1087)
..++||+.+++++.+.+..... .-+.++|.+|+|||++|+.+++...... ......+|. ..+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~------~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSS------CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccCC------CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 4689999999999999875432 3468999999999999999987542110 012333332 11110
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHHhh-CCCceEEEEecCCCC--------CHhhHHHhhcccccCCCCcEEEEEcCC
Q 047894 242 SKALLESITSAASDLKTLNEVQVQLKKAV-DGKRFLLVLDDVWNE--------DYSLWVDLKAPFLAAEPNSKMIVTTRN 312 (1087)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~~s~ilvTtr~ 312 (1087)
+.. .......+.....+.+.+ ..++.+|++|++..- ...+...+...+... .+..+|.+|..
T Consensus 254 -------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_dssp --------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECH
T ss_pred -------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCc
Confidence 000 011122333223333333 446789999999643 122222223333222 34566666654
Q ss_pred cccccc-------cCCCceeeCCCCChHhHHHHHHHhh
Q 047894 313 SNVAST-------MGPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 313 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
...... ......+.++..+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 322111 1111368899999999888887644
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.17 E-value=0.0067 Score=63.26 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=92.1
Q ss_pred CccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVL---ADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~---~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
..++|.+..++++.+.+. .... -+....+-+.|+|++|+||||+|+.+++... . .| +.+..+...+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~-~~---~~i~~~~~~~~- 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--V-PF---FTISGSDFVEM- 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--C-CE---EEECSCSSTTS-
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--C-CE---EEEeHHHHHHH-
Confidence 468999888777765542 2110 0001223488999999999999999987532 1 22 33332221110
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC----------H----hhHHHhhccccc--CCCC
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED----------Y----SLWVDLKAPFLA--AEPN 303 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~~ 303 (1087)
........+...+.......+.++++|+++.-. . .....+...+.. ...+
T Consensus 85 --------------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 85 --------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp --------------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred --------------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 001112223333444445567899999982110 0 111122221111 1234
Q ss_pred cEEEEEcCCcc-ccccc-C---CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCC-chhHHHH
Q 047894 304 SKMIVTTRNSN-VASTM-G---PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGG-LALAAKT 375 (1087)
Q Consensus 304 s~ilvTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~ 375 (1087)
..||.||.... +.... . -...+.++..+.++-.+++....-.. ....... ...+++.+.| .+--+..
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-CCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 56666665543 22221 1 12467788888888777776654221 1111111 2346777777 6654443
No 223
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.16 E-value=0.00017 Score=71.02 Aligned_cols=114 Identities=14% Similarity=0.007 Sum_probs=83.2
Q ss_pred cccCCCccEeeeccc-cCCCCcccchhhhhhcccCCCCcccEEEecCCCCcc-----cCccccCCccceeeccCCCcCcc
Q 047894 542 FYEIEHLRTFLPLRI-RGGTNTSYITRTVLSDLLPKFKRLRMLSLQGYCIGE-----LPIPFEELRLLRFLNLADIDIKS 615 (1087)
Q Consensus 542 ~~~~~~lr~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~i~~ 615 (1087)
+...+.++.|.+..+ ... ......+...+...+.|++|+|++|.++. +...+.....|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~----~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP----VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC----HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCCC----HHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 445678888877654 321 11223344557778999999999999854 34556667889999999999883
Q ss_pred -----cccccccCCCCcEEEe--cCCCCCc----ccCcccCCCCCcCEEeecCCc
Q 047894 616 -----LPESTCKLLNLEILIL--RNCSRLI----KLPPKMRNLINLNHLDIRGAK 659 (1087)
Q Consensus 616 -----lp~~i~~L~~L~~L~L--~~~~~l~----~lp~~i~~L~~L~~L~l~~~~ 659 (1087)
+...+...++|++|+| ++|..-. .+...+...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5777888999999999 7766322 144456667899999999987
No 224
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0042 Score=68.71 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=94.8
Q ss_pred CccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLA----DT---PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~----~~---~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..+.|-++.+++|.+.+.- .+ .-+...++-|.++|++|+|||+||+.+++.... . .+.|..+...+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~---~---fi~vs~s~L~sk 282 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA---T---FIRVIGSELVQK 282 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---E---EEEEEGGGGCCC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC---C---eEEEEhHHhhcc
Confidence 3578999888888775421 10 001134567889999999999999999986431 2 234443322110
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC--------H--h----hHHHhhccccc--CCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED--------Y--S----LWVDLKAPFLA--AEP 302 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~--~----~~~~l~~~l~~--~~~ 302 (1087)
........+...+...-...+.+|++|+++... . . ....+...+.. ...
T Consensus 283 ---------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 283 ---------------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ---------------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ---------------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 001111122222333334678999999985321 0 0 01111222211 223
Q ss_pred CcEEEEEcCCccccc-cc----CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 303 NSKMIVTTRNSNVAS-TM----GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
+..||.||-.....+ .+ .-...+.++..+.++-.++|..+...-. ....-.+ ..|++.|.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCCH----HHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCCH----HHHHHHCCCCC
Confidence 345566665433322 11 2235788888888888888877653221 1111122 45778888753
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.14 E-value=0.00078 Score=82.58 Aligned_cols=150 Identities=14% Similarity=0.143 Sum_probs=80.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc--CCCeEEEEEeCCcccHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDS--KFDVKAWVCVSDVFDVLGISK 243 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~--~f~~~~wv~~s~~~~~~~~~~ 243 (1087)
..++||+.+++++.+.+..... .-+.++|++|+|||++|+.+++....... .....-++.++..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~------~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g-------- 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTK------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCCC------CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc--------
Confidence 4699999999999999976432 23689999999999999999876311100 0001111111110
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCccccc------
Q 047894 244 ALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVAS------ 317 (1087)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~~------ 317 (1087)
.... ........ ..+......++.+|++|.. . .....+...+. ....++|.||.......
T Consensus 246 ---~~~~--G~~e~~l~---~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 246 ---TKYR--GEFEDRLK---KVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred ---cccc--chHHHHHH---HHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 0000 00011122 2233333467889999921 1 12222333332 22456776666544211
Q ss_pred cc-CCCceeeCCCCChHhHHHHHHHhh
Q 047894 318 TM-GPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 318 ~~-~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
.+ .....+.++..+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 10 111468999999999999998654
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.14 E-value=0.00067 Score=71.43 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=34.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.++|.+..+.++.+.+...... ...|.|+|.+|+|||++|+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~----~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPL----DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTS----CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4789999888888776542221 1357899999999999999998764
No 227
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.004 Score=69.05 Aligned_cols=178 Identities=12% Similarity=0.100 Sum_probs=92.9
Q ss_pred CccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLA----DT---PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~----~~---~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..+.|-++.+++|.+.+.. .+ .-+...++-|.++|++|+|||.+|+.+++.... . .+.++.+...+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~---~---f~~v~~s~l~~~ 254 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA---T---FLKLAAPQLVQM 254 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---E---EEEEEGGGGCSS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC---C---EEEEehhhhhhc
Confidence 4688999998888776422 10 001134567899999999999999999986431 1 234443322110
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCC-------CH---hhH----HHhhccccc--CCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-------DY---SLW----VDLKAPFLA--AEP 302 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------~~---~~~----~~l~~~l~~--~~~ 302 (1087)
........+...+...-...+.+|++|+++.- .. ... ..+...+.. ...
T Consensus 255 ---------------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 255 ---------------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ---------------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ---------------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 00011111111222222346899999998321 00 011 112222221 123
Q ss_pred CcEEEEEcCCccccc-cc-CC---CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCc
Q 047894 303 NSKMIVTTRNSNVAS-TM-GP---IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGL 369 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~~-~~-~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 369 (1087)
+-.||.||......+ .+ .+ ...+.++..+.++-.++|..+.-.-.. ...-. ..+|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 445666776544332 21 12 246888888888888888765532211 11112 24577888774
No 228
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0047 Score=67.57 Aligned_cols=179 Identities=16% Similarity=0.117 Sum_probs=92.9
Q ss_pred CccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLA----DT---PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~----~~---~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
.++.|-++.+++|.+.+.- .+ .-+...++-|.++|++|+|||.||+++++.... .| +.++.+...+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---~f---i~v~~s~l~sk 255 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA---TF---LRIVGSELIQK 255 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC---EE---EEEESGGGCCS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC---CE---EEEEHHHhhhc
Confidence 4678899888888776532 10 001133467899999999999999999986431 22 33333322110
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC----------H----hhHHHhhccccc--CCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED----------Y----SLWVDLKAPFLA--AEP 302 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~ 302 (1087)
........+...+...-...+.+|++|+++... . .....+...+.. ...
T Consensus 256 ---------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 256 ---------------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ---------------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 000111111222222334568999999985320 0 011122222211 223
Q ss_pred CcEEEEEcCCccccc-cc-CCC---ceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 303 NSKMIVTTRNSNVAS-TM-GPI---EHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 303 ~s~ilvTtr~~~v~~-~~-~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
+..||.||-..+..+ .+ .+. ..+.++.-+.++-.++|..+.-.- .......+ .+|++.+.|.-
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCCH----HHHHHHCCSCC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCCH----HHHHHhCCCCC
Confidence 445566665443332 22 222 457888888888888887665322 11111122 45777777743
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.96 E-value=0.0057 Score=69.09 Aligned_cols=179 Identities=16% Similarity=0.117 Sum_probs=94.5
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHH
Q 047894 166 PEVFGREEDKAKILDMVLADTP------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVL 239 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 239 (1087)
..++|.++.++++.+.+..-.. -+....+-|.++|++|+|||+||+.+++.... .| +.++.+.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~---~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV---PF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC---CE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC---Ce---eeCCHHHHHHH-
Confidence 4689999887777665432100 00012234789999999999999999985421 22 33433322110
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCH--------------hhHHHhhccccc--CCCC
Q 047894 240 GISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDY--------------SLWVDLKAPFLA--AEPN 303 (1087)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~~ 303 (1087)
. ...........+.....+.+.+|+||+++.-.. .....+...+.. ...+
T Consensus 89 ---------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ---------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ---------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ---------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 001112222334444456789999999843210 112222222211 1235
Q ss_pred cEEEEEcCCccccc-c-cCC---CceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 304 SKMIVTTRNSNVAS-T-MGP---IEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 304 s~ilvTtr~~~v~~-~-~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
..||.||......+ . ... ...+.++..+.++-.+++..++..... ..... ...|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 56666666554322 1 121 236788888888877888766532211 11111 234788888876
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.96 E-value=0.001 Score=81.46 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=87.7
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPR---DHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGIS 242 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 242 (1087)
..++|.+..++.+.+.+...... .......+.++|++|+|||++|+.+++.... .-...+.++++...+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~---~~~~~i~i~~s~~~~~~~~- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG---DEESMIRIDMSEYMEKHST- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS---CTTCEEEEEGGGGCSSCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---CCcceEEEechhccccccc-
Confidence 45899999998888887643211 1123347899999999999999999876421 1123355555433221100
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccC-----------CCCcEEEEEcC
Q 047894 243 KALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA-----------EPNSKMIVTTR 311 (1087)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~ilvTtr 311 (1087)
....+...++. ...-+|+||++..........+...+..+ ....+||+||.
T Consensus 567 ---------------~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 567 ---------------SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ---------------C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ---------------ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 01111112221 23349999999777665565555544321 13568888887
Q ss_pred Cccc---------cccc-----C-CCceeeCCCCChHhHHHHHHHhh
Q 047894 312 NSNV---------ASTM-----G-PIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 312 ~~~v---------~~~~-----~-~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
...- ...+ . -...+.+.++++++...++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 3110 0001 1 11467888888888777766543
No 231
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.93 E-value=0.00047 Score=72.77 Aligned_cols=52 Identities=27% Similarity=0.294 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLADTPR------DHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~------~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++|.+..++.+.+.+..-... +....+-+.++|++|+|||++|+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 46899998888887765410000 00111237799999999999999998864
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.84 E-value=0.012 Score=70.61 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=96.5
Q ss_pred CccccchhhHHHHHHHHh----cCC---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVL----ADT---PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~----~~~---~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..+.|.++.+++|.+++. ..+ .-+...++-|.++|++|+|||+||+.+++.... + .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~---~---~~~v~~~~---- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---F---FFLINGPE---- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC---E---EEEEEHHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---e---EEEEEhHH----
Confidence 357788888888877653 111 111134577899999999999999999986431 2 23343221
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC-------Hhh----HHHhhccccc--CCCCcE
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED-------YSL----WVDLKAPFLA--AEPNSK 305 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~----~~~l~~~l~~--~~~~s~ 305 (1087)
+ . . .........+...+....+..+.+|+||+++.-. ... ...+...+.. ...+..
T Consensus 274 --l----~----s-k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 --I----M----S-KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp --H----H----S-SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred --h----h----c-ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1 0 0 0111122233344445556778999999984321 001 1112221111 112334
Q ss_pred EEEEcCCc-ccccccC----CCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchh
Q 047894 306 MIVTTRNS-NVASTMG----PIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLAL 371 (1087)
Q Consensus 306 ilvTtr~~-~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL 371 (1087)
||.||... .+-..+. -...+.++..+.++-.+++..+..... ...... ..+|++++.|.--
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCCH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCCH
Confidence 55555543 2322221 225688888888888888876552211 111112 2458888888643
No 233
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.82 E-value=0.012 Score=64.14 Aligned_cols=152 Identities=11% Similarity=0.076 Sum_probs=83.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALL 246 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 246 (1087)
.++|+++.++.+...+... .-+.++|++|+|||++|+.+.+... . .| ..+..+......++ .
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~~~--~-~~---~~i~~~~~~~~~~l----~ 89 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKTMD--L-DF---HRIQFTPDLLPSDL----I 89 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHHTT--C-CE---EEEECCTTCCHHHH----H
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHHhC--C-Ce---EEEecCCCCChhhc----C
Confidence 4789999999988888653 2478999999999999999987532 1 22 23333322222221 1
Q ss_pred HHhhcCCCCcccHHHHHHHHHHhhCC--CceEEEEecCCCCCHhhHHHhhccccc-----------CCCCcEEEEEcCCc
Q 047894 247 ESITSAASDLKTLNEVQVQLKKAVDG--KRFLLVLDDVWNEDYSLWVDLKAPFLA-----------AEPNSKMIVTTRNS 313 (1087)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~~s~ilvTtr~~ 313 (1087)
.......... .. ....+ ...++++|++..........+...+.. ......|+.|+...
T Consensus 90 g~~~~~~~~~-~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 90 GTMIYNQHKG-NF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EEEEEETTTT-EE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred CceeecCCCC-ce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 1110000000 00 00001 125999999976655444444333221 12344556566533
Q ss_pred c------ccccc-CCCc-eeeCCCCChHhHHHHHHHhhcC
Q 047894 314 N------VASTM-GPIE-HYNLKSLSDDDCWSIFIKHVFE 345 (1087)
Q Consensus 314 ~------v~~~~-~~~~-~~~l~~L~~~~~~~lf~~~~~~ 345 (1087)
. +...+ .... .+.++..+.++-.+++.+.+..
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 2 11111 1112 4889999999999999887643
No 234
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.80 E-value=0.037 Score=61.51 Aligned_cols=101 Identities=12% Similarity=0.123 Sum_probs=73.9
Q ss_pred EecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccC-CCCCCCCCccEEEEecCCCCcccCCCCCC--CC
Q 047894 980 IENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIP-DGLPNLKCLQSICIRKCPSLVSFPERGLP--NT 1056 (1087)
Q Consensus 980 l~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~c~~l~~lp~~~~~--~s 1056 (1087)
+.+|..|+.+.+..+ ++......|.++.+|+.+.+..+ ...++ ..+.++++|+.+.+.+ ..++.++...|. ++
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccc-cccceehhhhhcCCCC
Confidence 446777777766544 44445567888999999999765 33444 4678899999999987 568889887664 68
Q ss_pred cCeEEEccCCCCCCCC-CCCCCCCCCCcEEe
Q 047894 1057 ISAVYICECDKLEAPP-NDMHKLNSLQSLSI 1086 (1087)
Q Consensus 1057 L~~L~i~~c~~l~~~p-~~l~~l~~L~~l~i 1086 (1087)
|+.+.+.. .++.+. ..|.++++|+.+.+
T Consensus 312 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 312 LSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred CCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 99999964 355554 46889999988865
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.74 E-value=0.0041 Score=72.31 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=77.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHH
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKAL 245 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 245 (1087)
..++|-+.....+.+.+.-..-.......++.++|++|+||||||+.++..... .| ..+.++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~---~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR---KF---VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC---EE---EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC---Ce---EEEEecccchhhhhhhHH
Confidence 357888887777755443111000013358999999999999999999875421 11 223333322222111111
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHh----hHHHhhcccccCC---------------CCcEE
Q 047894 246 LESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYS----LWVDLKAPFLAAE---------------PNSKM 306 (1087)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~~s~i 306 (1087)
...++. ........+... ....-++++|++..-... ....+...+.... ....|
T Consensus 155 ~~~ig~------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 155 RTYVGA------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHHhcc------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 111110 011111122222 223348899999654322 1223333332111 23456
Q ss_pred EEEcCCccccc-cc-CCCceeeCCCCChHhHHHHHHHhh
Q 047894 307 IVTTRNSNVAS-TM-GPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 307 lvTtr~~~v~~-~~-~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
|.||....... .+ .....+.+.+++.++-.+++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 66665432111 00 111467899999988888877654
No 236
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.71 E-value=0.053 Score=60.20 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=25.9
Q ss_pred ecccCccccccccCCCCCCCCCCCCCCCCccEEEEeccCCCcccC-CCCCCCCCccEEEEe
Q 047894 981 ENCEKLQRLFDDEGDASSSSPSSSSSPVMLQLLRIENCRKLESIP-DGLPNLKCLQSICIR 1040 (1087)
Q Consensus 981 ~~c~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~ 1040 (1087)
.+|.+|+.+.+..+.++......|.++++|+.+.|..+ +..+. ..|.++++|+++.+.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 34445554444444444444444555555555555432 22222 234445555544443
No 237
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.69 E-value=0.013 Score=66.70 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=36.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 167 EVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.++|+++.++.+...+... .-|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 4789999998888877654 258899999999999999999864
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.54 E-value=0.0011 Score=71.09 Aligned_cols=45 Identities=27% Similarity=0.264 Sum_probs=31.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 171 REEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 171 r~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
+....+.+.+++..... .....+.++|++|+|||+||..+++...
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445556666654321 1135688999999999999999998654
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.53 E-value=0.0071 Score=61.33 Aligned_cols=85 Identities=28% Similarity=0.205 Sum_probs=51.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhh-----------cCC-CCcccHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESIT-----------SAA-SDLKTLN 260 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-----------~~~-~~~~~~~ 260 (1087)
..++.|+|.+|+||||||..++. . .-..++|++.....+...+.. +.+..+ ... .......
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 35899999999999999999987 1 224678888776444444332 222221 111 1122223
Q ss_pred HHHHHHHHhhCCCceEEEEecCCC
Q 047894 261 EVQVQLKKAVDGKRFLLVLDDVWN 284 (1087)
Q Consensus 261 ~~~~~l~~~l~~kr~LlVlDdv~~ 284 (1087)
.....++..+..+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344445555544577999999854
No 240
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.46 E-value=0.017 Score=61.34 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++.+.++|++|+|||+||+.+++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678899999999999999999865
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.27 E-value=0.0024 Score=67.03 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=44.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEe--CCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhh
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCV--SDVFDVLGISKALLESITSAASDLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 270 (1087)
.+++.|+|++|+|||+||.+++.. .+ ..++|+++ ....+. ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G---~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LG---GKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HH---TTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CC---CCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHH
Confidence 367889999999999999999875 11 12355665 221110 0034455555566666
Q ss_pred CCCceEEEEecCCC
Q 047894 271 DGKRFLLVLDDVWN 284 (1087)
Q Consensus 271 ~~kr~LlVlDdv~~ 284 (1087)
...+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5555 999999943
No 242
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.21 E-value=0.0069 Score=74.28 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3588999998888877653211 111234578999999999999999998754
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.04 E-value=0.047 Score=56.59 Aligned_cols=51 Identities=31% Similarity=0.363 Sum_probs=33.2
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++|.++.+.++.+....-.. +-..... +.|+|++|+||||||+.++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHHh
Confidence 4688888776666554321100 0001112 8999999999999999998754
No 244
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.87 E-value=0.067 Score=56.30 Aligned_cols=52 Identities=31% Similarity=0.312 Sum_probs=34.4
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 165 EPEVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
-..++|.++.++++.+....-.. +- ...+-+.|+|++|+||||||+.++...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~-~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC-CCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCC-CCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 35688988777766554422100 00 011128999999999999999998764
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.86 E-value=0.066 Score=60.85 Aligned_cols=176 Identities=14% Similarity=0.115 Sum_probs=89.2
Q ss_pred CCccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 165 EPEVFGREEDKAKILDMVL---ADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~---~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
-..++|.++.+.++.+... .... -+....+-|.|+|++|+||||||+.++.... ...+.++.+...+.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~------~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASGSDFVEM 103 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CCEEEEEGGGGTSS
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEehhHHHHh
Confidence 3468999887777665543 2100 0001122389999999999999999987642 11234443321110
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC----CCceEEEEecCCCCC----------HhhH----HHhhcccccC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVD----GKRFLLVLDDVWNED----------YSLW----VDLKAPFLAA 300 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~~ 300 (1087)
. .......++..++ ..+.++++|++..-. ...+ ..+...+...
T Consensus 104 --------------~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 104 --------------F-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp --------------C-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred --------------h-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 0011122222232 235799999984210 1112 2232223222
Q ss_pred --CCCcEEEEEcCCccccc-cc----CCCceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCch
Q 047894 301 --EPNSKMIVTTRNSNVAS-TM----GPIEHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLA 370 (1087)
Q Consensus 301 --~~~s~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 370 (1087)
..+..|+.||......+ .. .-...+.++..+.++-.+++..++-+. ....... ...|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 22344555555554332 11 122468888888888888887655221 1111111 234677777755
No 246
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.77 E-value=0.02 Score=61.90 Aligned_cols=86 Identities=21% Similarity=0.214 Sum_probs=55.8
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----CcccHHHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----DLKTLNEVQVQ 265 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~ 265 (1087)
+...++.|+|++|+||||||.+++...... -..++|++....++.. .++.++.... ...+.++....
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEI 130 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHH
Confidence 344799999999999999999998764322 1346788877666543 3444443211 23455565555
Q ss_pred HHHhhC-CCceEEEEecCCC
Q 047894 266 LKKAVD-GKRFLLVLDDVWN 284 (1087)
Q Consensus 266 l~~~l~-~kr~LlVlDdv~~ 284 (1087)
+...++ .+.-++|+|.+..
T Consensus 131 ~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 131 VDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHHTSCCSEEEEECTTT
T ss_pred HHHHhhhcCCCeEEehHhhh
Confidence 555443 4566999999843
No 247
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.73 E-value=0.015 Score=72.11 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=71.6
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHH
Q 047894 167 EVFGREEDKAKILDMVLADTP---RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISK 243 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 243 (1087)
.++|.+..++.+...+..... ........+.|+|++|+|||++|+.+.+.....+ ...+.++.+....... ..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i~~~~~~~~~~-~s 634 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHA-VS 634 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCCSSGG-GG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhccchhH-HH
Confidence 479999999988887754321 1112346789999999999999999987642111 1234444443322110 00
Q ss_pred HHHHHhhcCC--CCcccHHHHHHHHHHhhCCCceEEEEecCCCCCHhhHHHhhcccccCC-----------CCcEEEEEc
Q 047894 244 ALLESITSAA--SDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAE-----------PNSKMIVTT 310 (1087)
Q Consensus 244 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~ilvTt 310 (1087)
.+ ++... ........+...++. ...-+|+||++..........+...+..+. .+..||+||
T Consensus 635 ~l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 635 RL---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp GC-----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HH---cCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 00 00000 000011112222222 223589999997766666666655554321 244577777
Q ss_pred CC
Q 047894 311 RN 312 (1087)
Q Consensus 311 r~ 312 (1087)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 248
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.62 E-value=0.079 Score=55.41 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=65.5
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHH-HHHHHHHhhCCCc
Q 047894 196 IPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNE-VQVQLKKAVDGKR 274 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~kr 274 (1087)
+.++|++|+||||||+.++.... . ..+++......+.. ...... +.......-...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~-----~-~~i~i~g~~l~~~~----------------~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG-----L-NFISVKGPELLNMY----------------VGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT-----C-EEEEEETTTTCSST----------------THHHHHHHHHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcC-----C-CEEEEEcHHHHhhh----------------hhHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999987532 1 23444433221100 000011 1111111113457
Q ss_pred eEEEEecCCCCCH-----------hhHHHhhcccccC--CCCcEEEEEcCCccccccc-----CCCceeeCCCCChHhHH
Q 047894 275 FLLVLDDVWNEDY-----------SLWVDLKAPFLAA--EPNSKMIVTTRNSNVASTM-----GPIEHYNLKSLSDDDCW 336 (1087)
Q Consensus 275 ~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~~s~ilvTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~ 336 (1087)
.++++|++..... .....+...+..+ ....-++.+|...++.+.. .-...+.++..+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 8999999854210 0111222222222 1233455566655443321 22356788888888888
Q ss_pred HHHHHhh
Q 047894 337 SIFIKHV 343 (1087)
Q Consensus 337 ~lf~~~~ 343 (1087)
+++....
T Consensus 185 ~il~~~~ 191 (274)
T 2x8a_A 185 AILKTIT 191 (274)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887655
No 249
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.42 E-value=0.017 Score=57.46 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=35.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 170 GREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 170 Gr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.|++.++.+.+.+..... ....+|+|+|..|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677888888875432 445899999999999999999987643
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.41 E-value=0.11 Score=63.46 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=82.3
Q ss_pred CccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLA----DT---PRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~----~~---~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..++|.+..++++.+++.. .. .-.......|.|+|++|+||||||+.++.... ..| +.++.+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~---~~~---i~v~~~~l--- 274 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFF---FLINGPEI--- 274 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT---CEE---EEEEHHHH---
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC---CcE---EEEEchHh---
Confidence 4689999999998887753 00 00012335689999999999999999987532 122 33332110
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCCCCC-------Hh----hHHHhhccccc--CCCCcE
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVWNED-------YS----LWVDLKAPFLA--AEPNSK 305 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~----~~~~l~~~l~~--~~~~s~ 305 (1087)
.... .......+...+.......+.++++|++.... .. ....+...+.. ...+..
T Consensus 275 -----------~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 275 -----------MSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----------SSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred -----------hhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 0000 00111122223333334467899999983211 00 11112221111 123445
Q ss_pred EEEEcCCcc-cccccC----CCceeeCCCCChHhHHHHHHHhh
Q 047894 306 MIVTTRNSN-VASTMG----PIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 306 ilvTtr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
+|.||.... +...+. -...+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 565665432 222111 11456788888888888887655
No 251
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.39 E-value=0.013 Score=62.79 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV 235 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 235 (1087)
+.++.+..-.. ...++|+|.+|+|||||++.+.+........+.+ +++-+...
T Consensus 163 raID~~~pi~r-----GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIGR-----GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDER 215 (422)
T ss_dssp HHHHHHSCCBT-----TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSC
T ss_pred eeeeeeeeecC-----CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCC
Confidence 45666655432 2478999999999999999987754322113333 45666654
No 252
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.39 E-value=0.043 Score=57.36 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=53.8
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----CcccHHHH-HHHHHH
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----DLKTLNEV-QVQLKK 268 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~ 268 (1087)
++-|.|++|+||||||.+++....... .-..++||+....++.. .+++++.... ...+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 789999999999999999876543221 12467899888776653 2555654322 23355554 333322
Q ss_pred h--h-CCCceEEEEecCCC
Q 047894 269 A--V-DGKRFLLVLDDVWN 284 (1087)
Q Consensus 269 ~--l-~~kr~LlVlDdv~~ 284 (1087)
. + +++.-+||+|-+..
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 2 45678999999843
No 253
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.28 E-value=0.027 Score=57.52 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=60.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-------------------
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS------------------- 254 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------------- 254 (1087)
.++.|+|.+|+|||||++.++......+ ..++|+..... ...+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEES--RDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSSC--HHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcccC--HHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 5899999999999999999986543221 24566665442 333333222 2221100
Q ss_pred ----CcccHHHHHHHHHHhhCC-Cc--eEEEEecCCCC---CHhhHHHhhccccc--CCCCcEEEEEcCCc
Q 047894 255 ----DLKTLNEVQVQLKKAVDG-KR--FLLVLDDVWNE---DYSLWVDLKAPFLA--AEPNSKMIVTTRNS 313 (1087)
Q Consensus 255 ----~~~~~~~~~~~l~~~l~~-kr--~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~~s~ilvTtr~~ 313 (1087)
...+.+++...+.+.+.. +. .+||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 111455555555544422 33 49999997421 22222333332221 13477888888764
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.20 E-value=0.046 Score=59.50 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=54.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----CcccHHHHHHHHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----DLKTLNEVQVQLK 267 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 267 (1087)
..++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++.... ...+.++....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 3588999999999999999987654322 2368899988766543 1334432211 2345566666666
Q ss_pred HhhC-CCceEEEEecCC
Q 047894 268 KAVD-GKRFLLVLDDVW 283 (1087)
Q Consensus 268 ~~l~-~kr~LlVlDdv~ 283 (1087)
...+ .+.-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 5554 345699999883
No 255
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.18 E-value=0.12 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+|||||++.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997754
No 256
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.17 E-value=0.023 Score=51.65 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=37.9
Q ss_pred cEEEecCCCCc--ccCccccCCccceeeccCCCcCccccc-ccccCCCCcEEEecCCC
Q 047894 581 RMLSLQGYCIG--ELPIPFEELRLLRFLNLADIDIKSLPE-STCKLLNLEILILRNCS 635 (1087)
Q Consensus 581 r~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 635 (1087)
.+++.+++.++ .+|..+.. +|++|+|++|.|+.+|. .+..+.+|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~--~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPV--DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCT--TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCCc--CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36777777777 77766542 57788888888887765 45667777777777764
No 257
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.05 E-value=0.0099 Score=59.61 Aligned_cols=113 Identities=11% Similarity=-0.045 Sum_probs=62.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC--CcccHHHHHHHHHHhh
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS--DLKTLNEVQVQLKKAV 270 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 270 (1087)
..++.|+|..|+||||++..+.++...++ . .++.+...-... -...++..++.... ......++...+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g--~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD--V-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--C-CEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC--C-EEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 36899999999999999998887764322 2 233343222111 11122333322111 1123345555666555
Q ss_pred CCCce-EEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc
Q 047894 271 DGKRF-LLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN 314 (1087)
Q Consensus 271 ~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~ 314 (1087)
.+.++ +||+|.+..-..+..+. ...+.+ .|-.||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~-l~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEV-ANILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHH-HHHHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHH-HHHHHh--CCCeEEEEecccc
Confidence 54444 99999986543333222 233333 3788999998654
No 258
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.02 E-value=0.16 Score=55.30 Aligned_cols=156 Identities=10% Similarity=-0.027 Sum_probs=95.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHH-HhhCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLK-KAVDG 272 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~ 272 (1087)
.+..++|..|.||++.|+.+.+..... .|+....+.+....+..+ +...+. .-+-+
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~---------------------l~~~~~~~plf~ 75 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQ--GFEEHHTFSIDPNTDWNA---------------------IFSLCQAMSLFA 75 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHH--TCCEEEEEECCTTCCHHH---------------------HHHHHHHHHHCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhC--CCCeeEEEEecCCCCHHH---------------------HHHHhcCcCCcc
Confidence 588899999999999999987754311 343222222322223222 222221 12346
Q ss_pred CceEEEEecCCC-CCHhhHHHhhcccccCCCCcEEEEEcCC-------ccccccc-CCCceeeCCCCChHhHHHHHHHhh
Q 047894 273 KRFLLVLDDVWN-EDYSLWVDLKAPFLAAEPNSKMIVTTRN-------SNVASTM-GPIEHYNLKSLSDDDCWSIFIKHV 343 (1087)
Q Consensus 273 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~~s~ilvTtr~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 343 (1087)
++-++|+|++.. -....+..+...+....+++.+|+++.. ..+...+ .....++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999865 4445677777666544557777766643 1222222 223578899999999888887766
Q ss_pred cCCCCCCcchhhHHHHHHHHHHhCCchhHHHHH
Q 047894 344 FESRDLNAHQISESFRKKVVAKCGGLALAAKTL 376 (1087)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 376 (1087)
-..+. ....+.+..|++.++|...++...
T Consensus 156 ~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 33221 223456778999999988877653
No 259
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.99 E-value=0.1 Score=56.57 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=39.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccc---cCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRD---SKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
+...++.|+|.+|+||||+|.+++....... +.-..++|++....++...+.. +++.+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 3457999999999999999999876532110 0224688999888766655443 33443
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.80 E-value=0.061 Score=56.85 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=44.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALLESITSAASDLKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (1087)
..+++++|.+|+||||++..++....... . ..+..+..... ....+-+....+..+.......+...+...+.. +
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEK-H-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTT-C-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-C-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 46899999999999999999886554211 1 23445544321 112222222222222211112233444444443 3
Q ss_pred CCceEEEEecC
Q 047894 272 GKRFLLVLDDV 282 (1087)
Q Consensus 272 ~kr~LlVlDdv 282 (1087)
.+.-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44568889944
No 261
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.77 E-value=0.065 Score=58.11 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----CcccHHHHHHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----DLKTLNEVQVQL 266 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 266 (1087)
...++.|+|.+|+||||||.+++...... -..++|++....++.. .++.++.... ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34689999999999999999988654322 2357899887765543 2334432211 223455555555
Q ss_pred HHhhC-CCceEEEEecCC
Q 047894 267 KKAVD-GKRFLLVLDDVW 283 (1087)
Q Consensus 267 ~~~l~-~kr~LlVlDdv~ 283 (1087)
..... .+.-+||+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 54443 456799999874
No 262
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.66 E-value=0.11 Score=54.52 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=44.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHh------hc-CCCCcccHHHHH
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESI------TS-AASDLKTLNEVQ 263 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 263 (1087)
....+|+|+|..|+||||||+.+.......+........|+....+-.......+.... .. ...+..+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 45689999999999999999988775542210123344445554433333333333221 00 013344555555
Q ss_pred HHHHHhhCC
Q 047894 264 VQLKKAVDG 272 (1087)
Q Consensus 264 ~~l~~~l~~ 272 (1087)
..+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555554443
No 263
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.61 E-value=0.025 Score=54.79 Aligned_cols=116 Identities=16% Similarity=0.064 Sum_probs=57.9
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC---cccHHHHHHHHHHHh---hcCC-CCcc-------cHH
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD---VFDVLGISKALLESI---TSAA-SDLK-------TLN 260 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l---~~~~-~~~~-------~~~ 260 (1087)
.|.|++..|.||||+|-...-.... +=..+.++..-. ......++..+.-.+ +..- .... ...
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 5677777779999999877665432 222344443322 223333333320000 0000 0011 112
Q ss_pred HHHHHHHHhhCCCc-eEEEEecCCCC---CHhhHHHhhcccccCCCCcEEEEEcCCc
Q 047894 261 EVQVQLKKAVDGKR-FLLVLDDVWNE---DYSLWVDLKAPFLAAEPNSKMIVTTRNS 313 (1087)
Q Consensus 261 ~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~~s~ilvTtr~~ 313 (1087)
......++.+.+.+ -|||||++-.. .....+++...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 22334555565544 49999998211 1122334444444444578999999975
No 264
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.60 E-value=0.083 Score=54.24 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=32.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcccccc---ccCCCeEEEEEeCCcccHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVR---DSKFDVKAWVCVSDVFDVLG 240 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~ 240 (1087)
.++.|+|++|+|||||+..++...... ++.-..++|+.....++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~ 74 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 74 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH
Confidence 589999999999999999988642111 00135688888776544443
No 265
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.54 E-value=0.1 Score=55.47 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 047894 168 VFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
++|....+..+...+...... ..+.+|+|.|..|+||||+|+.+..-
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~--~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEP--KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC--CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCC--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344455555555555544321 56789999999999999999998654
No 266
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.48 E-value=0.068 Score=57.66 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccccc-----------ccCC--CeEEEEEeCCcccHHHHHHHHHHHhhcCC-----
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVR-----------DSKF--DVKAWVCVSDVFDVLGISKALLESITSAA----- 253 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~-----------~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----- 253 (1087)
...++.|+|.+|+|||++|.+++...... .+.. ..++|++....++...+.. +++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 44799999999999999999987642110 0001 4678999888766665543 334443211
Q ss_pred ----CCcccHH---HHHHHHHHhhC--CCceEEEEecC
Q 047894 254 ----SDLKTLN---EVQVQLKKAVD--GKRFLLVLDDV 282 (1087)
Q Consensus 254 ----~~~~~~~---~~~~~l~~~l~--~kr~LlVlDdv 282 (1087)
....+.+ ++...+.+.+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 23333444443 34558888887
No 267
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.41 E-value=0.07 Score=57.49 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=38.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccccc---ccCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVR---DSKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
..++.|+|.+|+||||+|.+++...... ++.-..++|++....++...+. ++++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHh
Confidence 3589999999999999999987653211 0013468999988876665544 334444
No 268
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.40 E-value=0.32 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+|||||.+.++.-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 269
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.32 E-value=0.076 Score=57.60 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=52.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----CcccHHHHHHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----DLKTLNEVQVQL 266 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 266 (1087)
...++.|.|.+|+||||||.+++...... -..++|++....++... +..++.... +..+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 33689999999999999999988754322 23578999877665431 333432211 122445544444
Q ss_pred HHhh-CCCceEEEEecCC
Q 047894 267 KKAV-DGKRFLLVLDDVW 283 (1087)
Q Consensus 267 ~~~l-~~kr~LlVlDdv~ 283 (1087)
+... ..+.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 4333 2445699999873
No 270
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.12 E-value=0.12 Score=57.58 Aligned_cols=86 Identities=19% Similarity=0.296 Sum_probs=49.7
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHH--hh------cCCCCcccHHH----
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLES--IT------SAASDLKTLNE---- 261 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~--l~------~~~~~~~~~~~---- 261 (1087)
.++|+|.+|+|||||++.+....... +-+.++++.+.... ...++..++.+. +. ....+......
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 58999999999999999998765432 23455667666554 334444444322 00 11112111111
Q ss_pred HHHHHHHhh---CCCceEEEEecC
Q 047894 262 VQVQLKKAV---DGKRFLLVLDDV 282 (1087)
Q Consensus 262 ~~~~l~~~l---~~kr~LlVlDdv 282 (1087)
..-.+.+++ +++++|+++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 111233332 589999999999
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.11 E-value=0.035 Score=55.47 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 174 DKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 174 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
-.++|.+.+.... ....+|+|+|+.|+|||||++.+..-..
T Consensus 7 ~~~~~~~~~~~~~----~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQ----PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTC----CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455555554321 3457999999999999999999876543
No 272
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.09 E-value=0.019 Score=61.43 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc
Q 047894 176 AKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV 235 (1087)
Q Consensus 176 ~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 235 (1087)
-++++.+..-.. ..-+.|+|.+|+|||+|++.+.+........+.+ +++-+...
T Consensus 163 iraID~l~Pigr-----GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGK-----GQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBT-----TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred chhhhhcccccC-----CceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 457777765432 2467999999999999999988864322112333 45666544
No 273
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.02 E-value=0.13 Score=54.66 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=27.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVS 233 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 233 (1087)
.+++|+|.+|+|||||++.++....... -..++|+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCc
Confidence 5899999999999999999887643221 1145666544
No 274
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.80 E-value=0.057 Score=56.92 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 047894 175 KAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 175 ~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.++++..+....... ....+|.|.|++|+||||+|+.+...
T Consensus 16 ~~~~~~~~l~~~~~~-~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 16 LNDNLEELIQGKKAV-ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHTTCCCC-SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHhccccCC-CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444444444432221 45689999999999999999999764
No 275
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.73 E-value=0.038 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..+++|+|++|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999875
No 276
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.43 E-value=0.0076 Score=58.85 Aligned_cols=109 Identities=12% Similarity=-0.016 Sum_probs=52.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc--ccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV--FDVLGISKALLESITSAASDLKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (1087)
.++.|+|+.|+||||++..++.+....+ . .++.+..... .....+...+ .+........+.. .+.+.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~-~v~~~~~~~d~r~~~~~i~s~~--g~~~~~~~~~~~~----~~~~~~~ 74 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--K-KVAVFKPKIDSRYHSTMIVSHS--GNGVEAHVIERPE----EMRKYIE 74 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--C-EEEEEEEC-----CCCEECC------CEECEEESSGG----GGGGGCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--C-eEEEEeeccccccCcccEEecC--CCceeeEEECCHH----HHHHHhc
Confidence 4788999999999999977766543222 1 2233322211 0000000000 0000000001111 1223334
Q ss_pred CCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc
Q 047894 272 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN 314 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~ 314 (1087)
++.-+|++|.+..-+. .|......+.+. +..|++|.++..
T Consensus 75 ~~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESBC
T ss_pred CCCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeeccc
Confidence 4566999999865432 355444444333 778999887543
No 277
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.40 E-value=0.31 Score=53.97 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=44.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHH
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLES 248 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~ 248 (1087)
+.++.+..-.. -.-++|+|.+|+|||+|++++.+.... .+-+.++++-+.... .+.++.+++.+.
T Consensus 142 r~ID~l~pigk-----GQr~~Ifgg~G~GKT~L~~~i~~~~~~--~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAK-----GGKIGLFGGAGVGKTVLIMELINNVAK--AHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEET-----TCEEEEEECTTSSHHHHHHHHHHHTTT--TCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccccc-----CCeeeeecCCCCChHHHHHHHHHhhHh--hCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 46777765432 246799999999999999999876431 244667777777653 455666666554
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.38 E-value=0.04 Score=53.60 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.38 E-value=0.036 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|.|+|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998753
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.35 E-value=0.4 Score=53.14 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+.+|.++|.+|+||||++..++....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998876544
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.34 E-value=0.038 Score=53.48 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=18.7
Q ss_pred EEEEEEecCCChHHHHHHHH
Q 047894 194 VVIPIVGMGGIGKTTLAREV 213 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v 213 (1087)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 282
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.27 E-value=0.27 Score=51.97 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=47.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhhcCC---CCcccHHHH-HHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLESITSAA---SDLKTLNEV-QVQL 266 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 266 (1087)
...++.|+|.+|+||||++..++......+ ..+.++...... ...+-+...++..+... ....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 457999999999999999999887654221 234455543221 11111223333332111 111222222 2344
Q ss_pred HHhhCCCceEEEEecCCC
Q 047894 267 KKAVDGKRFLLVLDDVWN 284 (1087)
Q Consensus 267 ~~~l~~kr~LlVlDdv~~ 284 (1087)
...+..+.-++|+|-...
T Consensus 180 ~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCc
Confidence 444555556888897643
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.24 E-value=0.039 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998653
No 284
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.18 E-value=0.069 Score=55.21 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 047894 174 DKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 174 ~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..+++...+....... ....+|.|+|++|+||||+|+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSS-KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHTTCCCC-SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcc-cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444544454433322 45689999999999999999999765
No 285
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.12 E-value=0.13 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+|.|.|++|+||+|.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998764
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.12 E-value=0.04 Score=54.65 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|.|+|++|+||||+|+.+....
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998753
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.11 E-value=0.049 Score=54.00 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=22.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
..+|+|+|++|+||||+|+.+.....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999987654
No 288
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.06 E-value=0.094 Score=56.01 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=33.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 169 FGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 169 vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
|+.+.-.+++++.+...-.. +....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~--g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED--NYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT--CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc--CCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45556667777776433221 344678999999999999999887653
No 289
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.03 E-value=0.47 Score=50.61 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=37.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLES 248 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 248 (1087)
..++.|.|.+|+||||+|..++...... . ..++|++... +..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~--g-~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN--D-DVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT--T-CEEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--C-CeEEEEECCC--CHHHHHHHHHHH
Confidence 3689999999999999999988664332 2 5678887663 455666666554
No 290
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.00 E-value=0.072 Score=58.59 Aligned_cols=51 Identities=25% Similarity=0.208 Sum_probs=36.2
Q ss_pred ccccchhhHHHHHHHHhcC-------C--CCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 167 EVFGREEDKAKILDMVLAD-------T--PRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~-------~--~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.++|.+..++.+...+... . .........|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3688888888888877310 0 0000133568999999999999999998764
No 291
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.99 E-value=0.32 Score=52.06 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=36.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
.++.|.|.+|+||||+|..++...... -..++|++... +..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlEm--s~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLEM--SAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESSS--CHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCC--CHHHHHHHHHHHh
Confidence 589999999999999999998765432 23567776654 4566666666544
No 292
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.98 E-value=0.041 Score=53.48 Aligned_cols=23 Identities=13% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999764
No 293
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.97 E-value=0.45 Score=52.74 Aligned_cols=90 Identities=19% Similarity=0.127 Sum_probs=47.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhhcCC---CCcccHHHH-HHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALLESITSAA---SDLKTLNEV-QVQL 266 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 266 (1087)
...+|.++|.+|+||||++..++......+ . .++.+..... ....+-+....+..+.+. ....+.... ...+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--Y-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--C-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--C-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 468999999999999999999887654322 2 3344444322 122222222333332211 112233332 2334
Q ss_pred HHhhCCCceEEEEecCCC
Q 047894 267 KKAVDGKRFLLVLDDVWN 284 (1087)
Q Consensus 267 ~~~l~~kr~LlVlDdv~~ 284 (1087)
........-++|+|-...
T Consensus 173 ~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHTTTTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCC
Confidence 443334455778897753
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.89 E-value=0.057 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
...+|.|.|++|+||||+|+.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999999999998653
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.81 E-value=0.055 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.673 Sum_probs=20.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
..+++|+|+.|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999997553
No 296
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.75 E-value=0.12 Score=58.78 Aligned_cols=107 Identities=20% Similarity=0.146 Sum_probs=55.3
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHH--------
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQL-------- 266 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-------- 266 (1087)
.+.|.|.+|+||||++..+.......+ . ..++.+.-+.. . ...+.+.++. .......+...-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~-~-~~il~~a~T~~-A----a~~l~~~~~~---~~~T~h~~~~~~~~~~~~~~ 116 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG-E-TGIILAAPTHA-A----KKILSKLSGK---EASTIHSILKINPVTYEENV 116 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT-C-CCEEEEESSHH-H----HHHHHHHHSS---CEEEHHHHHTEEEEECSSCE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC-C-ceEEEecCcHH-H----HHHHHhhhcc---chhhHHHHhccCcccccccc
Confidence 789999999999999999887654332 2 23333332221 1 1222222211 111111110000
Q ss_pred ----H-HhhCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc
Q 047894 267 ----K-KAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN 314 (1087)
Q Consensus 267 ----~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~ 314 (1087)
. .....+.-+||+|++...+...+..+...+. .+.+|++.--..+
T Consensus 117 ~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 117 LFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp EEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred hhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 0 0001133589999987766556666655543 4667776654443
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.64 E-value=0.045 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+|+|+|++|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.59 E-value=0.06 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+|.|.|++|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999987653
No 299
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.57 E-value=0.38 Score=57.77 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=57.2
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccH
Q 047894 166 PEVFGREEDKAKILDMVLADTP-------RDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDV 238 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 238 (1087)
..+.|.++.+++|.+.+.-.-. .+....+-|.++|++|+|||.+|+.+++.... -++.++..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~--------~f~~v~~~--- 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISIKGP--- 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC--------EEEECCHH---
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC--------ceEEeccc---
Confidence 4567888888888776543211 11123445789999999999999999986431 22333321
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhCCCceEEEEecCC
Q 047894 239 LGISKALLESITSAASDLKTLNEVQVQLKKAVDGKRFLLVLDDVW 283 (1087)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 283 (1087)
+++.. . .......+...+...-+..+.+|++|+++
T Consensus 546 -----~l~s~----~-vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 546 -----ELLTM----W-FGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp -----HHHTT----T-CSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred -----hhhcc----c-cchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 11111 1 11222333444444446678999999984
No 300
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.53 E-value=0.051 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+.|.|+|++|+||||+|+.+....
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999998753
No 301
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.50 E-value=0.059 Score=53.83 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..+++|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998754
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.50 E-value=0.054 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+||||+++.+...
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999764
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.47 E-value=0.069 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..+++|+|++|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999998764
No 304
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.37 E-value=0.29 Score=53.09 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=32.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccccc--ccCC-CeEEEEEeCCccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVR--DSKF-DVKAWVCVSDVFD 237 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~--~~~f-~~~~wv~~s~~~~ 237 (1087)
+...++.|+|.+|+|||||+..++...... .+.. ..++|++....+.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 344899999999999999999987653211 0011 2458888766543
No 305
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.34 E-value=0.29 Score=52.79 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=33.7
Q ss_pred HHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhccccc--CCCCcEEEEEcCCccccc
Q 047894 262 VQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA--AEPNSKMIVTTRNSNVAS 317 (1087)
Q Consensus 262 ~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~~s~ilvTtr~~~v~~ 317 (1087)
..-.+...|-.++=+|++|.--+. +...-..+...+.. ...|..||++|-+-.++.
T Consensus 170 QRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~ 228 (366)
T 3tui_C 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVK 228 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 344577888888999999987433 22222233333322 124778888888765554
No 306
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.28 E-value=0.066 Score=53.35 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
...++|.|.|++|+||+|.|+.+...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998764
No 307
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.25 E-value=0.61 Score=51.97 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=36.1
Q ss_pred hHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeC
Q 047894 174 DKAKILDMVLADTPR---DHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVS 233 (1087)
Q Consensus 174 ~~~~l~~~l~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 233 (1087)
-.+++.+++...... .....++|.++|.+|+||||++..++.....+. -..++-|...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~--G~kVllvd~D 138 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH--KKKVLVVSAD 138 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTS--CCCEEEEECC
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecC
Confidence 355666666432210 113568999999999999999999887654330 1234555544
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.24 E-value=0.067 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 309
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.23 E-value=0.079 Score=53.03 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
...+|+|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999764
No 310
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.20 E-value=0.086 Score=52.57 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
...+|+|+|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999764
No 311
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.15 E-value=0.074 Score=54.98 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
....+|+|.|++|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999997743
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.07 E-value=0.073 Score=54.97 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.++.|.|++|+||||+|+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998653
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.06 E-value=0.079 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
.+++|+|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 314
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.06 E-value=0.35 Score=53.88 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHH
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLE 247 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~ 247 (1087)
+.++.|..-.. -.-++|.|.+|+|||+|+.++.+.... .+-+.++++-+.... ...++.+++.+
T Consensus 154 rvID~l~pigk-----Gqr~gIfgg~GvGKT~L~~~l~~~~a~--~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 154 KVVNLLAPYRR-----GGKIGLFGGAGVGKTVLIMELINNIAK--AHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTHHHHSCCCT-----TCCEEEEECSSSSHHHHHHHHHHHTTT--TCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEeeeeccccc-----CCeEEeecCCCCCchHHHHHHHHHHHh--hCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 36677765432 235799999999999999999886432 245778888887654 45566666654
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.05 E-value=0.058 Score=53.60 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|.|.|++|+||||+|+.+....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998753
No 316
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.03 E-value=0.65 Score=49.61 Aligned_cols=28 Identities=36% Similarity=0.325 Sum_probs=23.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
....+++|+|+.|+||||+++.+.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999887544
No 317
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.00 E-value=0.078 Score=51.22 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999887654
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.00 E-value=0.059 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.++|+|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3688999999999999999997653
No 319
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.97 E-value=0.44 Score=52.47 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=35.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccc---cccCCCeEEEEEeCCcccHHHHHHHHHHHhh
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAV---RDSKFDVKAWVCVSDVFDVLGISKALLESIT 250 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 250 (1087)
-.++.|+|.+|+|||||+..++-.... .++.-..++|+.....+....+ ..+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 368999999999999999976522111 1112346888887766554443 33444443
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.93 E-value=0.073 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987543
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.93 E-value=0.08 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998764
No 322
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.93 E-value=0.062 Score=52.19 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
++|.|+|++|+||||+|+.+....
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 578899999999999999998653
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.90 E-value=0.073 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999997653
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.89 E-value=0.074 Score=51.85 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
...|.|+|++|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.85 E-value=0.092 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
...+|+|.|++|+||||+|+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999864
No 326
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.85 E-value=0.093 Score=52.08 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
....+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34579999999999999999999874
No 327
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.84 E-value=0.7 Score=49.21 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
....++.|+|.+|+||||++..++....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999877554
No 328
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.83 E-value=0.055 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
+.|.|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999765
No 329
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.82 E-value=0.061 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998643
No 330
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.71 E-value=0.39 Score=49.18 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=28.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV 235 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 235 (1087)
.++.|.|.+|+||||+|.+++..... .-..++|++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCC
Confidence 58999999999999999888665321 2235678776553
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.69 E-value=0.1 Score=50.97 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
...+|.|+|++|+||||+++.+.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 447899999999999999999987654
No 332
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.69 E-value=0.089 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.67 E-value=0.083 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+|+|.|++|+||||+|+.+.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 334
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.67 E-value=0.08 Score=51.73 Aligned_cols=24 Identities=13% Similarity=0.484 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.++++|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999864
No 335
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.62 E-value=0.066 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999998764
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.61 E-value=0.082 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998754
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.58 E-value=0.096 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..|.+.|++|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.54 E-value=0.088 Score=52.34 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 047894 195 VIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999976
No 339
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.54 E-value=0.15 Score=51.58 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=28.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 173 EDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 173 ~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+..+.+.+.+.. .....|+|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344455554432 234788999999999999999998753
No 340
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.53 E-value=0.095 Score=57.34 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=33.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++|.+..++.+......... .-+.|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~------~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGI------GGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGG------CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCC------ceEEEECCCCccHHHHHHHHHHhC
Confidence 4589998876665544433221 238899999999999999998754
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.51 E-value=0.099 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 342
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.50 E-value=0.15 Score=52.24 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
....|.|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998653
No 343
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.45 E-value=1.1 Score=50.65 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
...++|+|+|.+|+||||++..+.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999986544
No 344
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.44 E-value=0.09 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..+|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 345
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.44 E-value=0.5 Score=52.29 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.++.++|.+|+||||++..++....
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999887654
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.43 E-value=0.11 Score=55.39 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
....+|+|+|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345799999999999999999987654
No 347
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.40 E-value=0.12 Score=50.28 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 175 KAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 175 ~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+..+..++... +....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 45566665432 223468999999999999999888764
No 348
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.39 E-value=0.1 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.4
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+|+|.|++|+||||+|+.+.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999987654
No 349
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.34 E-value=0.49 Score=54.48 Aligned_cols=54 Identities=13% Similarity=0.017 Sum_probs=37.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESI 249 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 249 (1087)
...++.|.|.+|+||||+|.+++.+.... +=..++|++.... ..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~s--~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEES--VEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSSC--HHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccCC--HHHHHHHHHHHH
Confidence 34688999999999999999998765432 1235778877654 456666665443
No 350
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.34 E-value=0.12 Score=48.60 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|.|||||++.++.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998764
No 351
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.33 E-value=0.32 Score=56.64 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=54.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCCCcccHHHHHHHHH-Hhh--
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAASDLKTLNEVQVQLK-KAV-- 270 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l-- 270 (1087)
+++.|.|.+|+||||++..+.......+ ..+.+......-. ..+.+.++. .......+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g----~~Vl~~ApT~~Aa----~~L~e~~~~---~a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG----LEVGLCAPTGKAA----RRLGEVTGR---TASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT----CCEEEEESSHHHH----HHHHHHHTS---CEEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC----CeEEEecCcHHHH----HHhHhhhcc---cHHHHHHHHcCCcchhhhh
Confidence 4789999999999999999887544221 2344444332222 222222221 1111111110000 000
Q ss_pred ---CCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcC
Q 047894 271 ---DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTR 311 (1087)
Q Consensus 271 ---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr 311 (1087)
..+.-+||+|++..-+...+..+...++ .+.++|+.--
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0123499999997666666666766554 4667776543
No 352
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.32 E-value=0.088 Score=50.81 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.|.|.|++|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998753
No 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.26 E-value=0.093 Score=53.19 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+|+|+|++|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.21 E-value=0.1 Score=51.78 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..+|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998753
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.17 E-value=0.096 Score=49.68 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+++.|+|..|+|||||+..+.....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 46899999999999999999987644
No 356
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.12 E-value=0.13 Score=56.87 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..+.++|++|+|||++|+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998754
No 357
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.11 E-value=0.4 Score=53.69 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=23.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
....+++|+|..|+|||||++.+.....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 3458999999999999999999987543
No 358
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.09 E-value=0.099 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|++|+||||+++.+...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999854
No 359
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.07 E-value=0.1 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 360
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.03 E-value=0.11 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..+|+|.|++|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 361
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.01 E-value=0.13 Score=52.91 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..+|+|.|+.|+|||||++.+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998764
No 362
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.94 E-value=0.084 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+|.|+|++|+||||+|+.+....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998753
No 363
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.93 E-value=0.26 Score=52.53 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
...+|+|+|..|+|||||++.+..-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999998764
No 364
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.93 E-value=0.11 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|+|.|++|+||||+|+.+....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998753
No 365
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=90.88 E-value=0.12 Score=54.88 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=28.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD 234 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 234 (1087)
++.+||+|.|-|||||||.|..+..-....+ ..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G---kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG---KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC---CeEEEEecCC
Confidence 4568999999999999999887765543222 2355566553
No 366
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.87 E-value=0.11 Score=52.07 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999998764
No 367
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.82 E-value=0.093 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999998764
No 368
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.80 E-value=0.088 Score=57.09 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=58.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHH-HHHHHHHHhhcCCCCcccHHHHHHHHHHhhCC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLG-ISKALLESITSAASDLKTLNEVQVQLKKAVDG 272 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (1087)
.+++|+|+.|+||||+.+.+....... ....+ +++.+...... -....+.+... ..+.. .....+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~---~~~~i-~t~ed~~e~~~~~~~~~v~q~~~-~~~~~---~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT---KYHHI-LTIEDPIEFVHESKKCLVNQREV-HRDTL---GFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH---CCCEE-EEEESSCCSCCCCSSSEEEEEEB-TTTBS---CHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC---CCcEE-EEccCcHHhhhhccccceeeeee-ccccC---CHHHHHHHHhhh
Confidence 589999999999999999887643211 11122 12211111000 00000000000 00111 233478888888
Q ss_pred CceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcccc
Q 047894 273 KRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNVA 316 (1087)
Q Consensus 273 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v~ 316 (1087)
.+=+|++|...+ .+.+..+.... ..|..|++|+-....+
T Consensus 196 ~PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999964 34444433332 2466788888765544
No 369
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.79 E-value=0.43 Score=50.30 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+++|+|.+|+||||++..++....
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999887654
No 370
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.75 E-value=0.073 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=17.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999997653
No 371
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.71 E-value=0.12 Score=49.49 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 372
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.69 E-value=0.45 Score=50.13 Aligned_cols=90 Identities=19% Similarity=0.079 Sum_probs=47.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHHHHHhhcCC---CCcccHHHHHHHHHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKALLESITSAA---SDLKTLNEVQVQLKK 268 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 268 (1087)
..+++++|.+|+||||++..++......+ ..+.++...... .....+....+..+... ....+..++.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 47899999999999999999887654222 234555554321 22222333333332211 111233444333333
Q ss_pred hhC-CCceEEEEecCCCC
Q 047894 269 AVD-GKRFLLVLDDVWNE 285 (1087)
Q Consensus 269 ~l~-~kr~LlVlDdv~~~ 285 (1087)
.++ ++--++|+|-....
T Consensus 175 ~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHTTCSEEEEECCCSC
T ss_pred HHHhCCCCEEEEeCCCCc
Confidence 333 33347888876443
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.65 E-value=0.099 Score=50.29 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 374
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.63 E-value=0.27 Score=54.08 Aligned_cols=101 Identities=13% Similarity=0.199 Sum_probs=56.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCC-eEEEEEeCCc-ccHHHHHHHHHHH--hhcC
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFD-VKAWVCVSDV-FDVLGISKALLES--ITSA 252 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~-~~~~~~~~~i~~~--l~~~ 252 (1087)
+.++.+..-.. -.-++|.|.+|+|||+|+.++.+.....+.+-+ .++++-+... ..+.++.+++.+. +...
T Consensus 140 raID~l~pigr-----GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rt 214 (465)
T 3vr4_D 140 SAIDHLNTLVR-----GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRS 214 (465)
T ss_dssp HHHHTTSCCBT-----TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGE
T ss_pred eEEeccccccc-----CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccce
Confidence 35666654322 134689999999999999999887543110111 5566666644 3455566655442 1110
Q ss_pred -----CCCcccHHH-----HHHHHHHhh---CCCceEEEEecC
Q 047894 253 -----ASDLKTLNE-----VQVQLKKAV---DGKRFLLVLDDV 282 (1087)
Q Consensus 253 -----~~~~~~~~~-----~~~~l~~~l---~~kr~LlVlDdv 282 (1087)
..+...... ..-.+.+++ .++.+|+++||+
T Consensus 215 vvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 215 VMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111111111 112344444 378999999998
No 375
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.60 E-value=0.12 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.3
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
.+|+|.|+.|+||||+|+.+.....
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.59 E-value=0.13 Score=50.20 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
...+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999764
No 377
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.51 E-value=0.12 Score=51.69 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
..+|+|.|+.|+||||+|+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999987643
No 378
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.50 E-value=0.19 Score=50.56 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=30.7
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 169 FGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 169 vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
-+.++..+.+.+.+.. ....+|+|+|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344555555555532 234789999999999999999988753
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.48 E-value=0.15 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 380
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.48 E-value=0.12 Score=50.71 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 381
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.43 E-value=0.48 Score=52.82 Aligned_cols=96 Identities=23% Similarity=0.245 Sum_probs=54.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHhccccccccCCC-eEEEEEeCCcc-cHHHHHHHHHHHhhcC-
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLA-REVYNDKAVRDSKFD-VKAWVCVSDVF-DVLGISKALLESITSA- 252 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~- 252 (1087)
+.++.+..-.. ..-++|+|.+|+|||+|| ..+.+.. ..+ .++++-+.... .+.++.+.+.+.=...
T Consensus 151 raID~l~Pigr-----GQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~ 220 (502)
T 2qe7_A 151 KAIDSMIPIGR-----GQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDY 220 (502)
T ss_dssp HHHHHSSCCBT-----TCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTT
T ss_pred eeccccccccc-----CCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcce
Confidence 46677655432 235799999999999996 4666652 345 34677777653 4455555554421111
Q ss_pred ------CCCcccHHHH-----HHHHHHhh--CCCceEEEEecC
Q 047894 253 ------ASDLKTLNEV-----QVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 253 ------~~~~~~~~~~-----~~~l~~~l--~~kr~LlVlDdv 282 (1087)
..+....... .-.+.+++ +++.+||++||+
T Consensus 221 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 221 TIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1111111111 11233333 589999999998
No 382
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.40 E-value=0.12 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999998753
No 383
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.39 E-value=0.16 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHh
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVY 214 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~ 214 (1087)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 384
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.31 E-value=0.13 Score=54.52 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
..+++|+|++|+||||+++.++.-..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46899999999999999999876543
No 385
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.23 E-value=0.16 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
..+|.|.|+.|+||||+|+.+.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 37899999999999999999987543
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.21 E-value=0.14 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+|+|+|+.|+||||+++.+...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999865
No 387
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.21 E-value=0.58 Score=52.19 Aligned_cols=96 Identities=23% Similarity=0.233 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHhccccccccCCC-eEEEEEeCCcc-cHHHHHHHHHHHhhc--
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLA-REVYNDKAVRDSKFD-VKAWVCVSDVF-DVLGISKALLESITS-- 251 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~-- 251 (1087)
+.++.+..-.. ..-++|+|.+|+|||+|| ..+.+.. ..+ .++++-+.... .+.++.+.+.+.=..
T Consensus 164 raID~l~Pigr-----GQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~r 233 (515)
T 2r9v_A 164 KAIDSMIPIGR-----GQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEY 233 (515)
T ss_dssp HHHHHHSCEET-----TCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGG
T ss_pred ccccccccccc-----CCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcce
Confidence 46677655422 235799999999999996 4666653 345 34677777553 455555555442111
Q ss_pred ------CCCCcccHHH----HHHHHHHhh--CCCceEEEEecC
Q 047894 252 ------AASDLKTLNE----VQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 252 ------~~~~~~~~~~----~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
..++...... ..-.+.+++ +++.+||++||+
T Consensus 234 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 234 TTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1111111111 111233333 589999999998
No 388
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.19 E-value=0.2 Score=48.99 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999865
No 389
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.15 E-value=0.86 Score=62.23 Aligned_cols=200 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcC------------CCCcccHHHHH
Q 047894 196 IPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSA------------ASDLKTLNEVQ 263 (1087)
Q Consensus 196 v~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~~~ 263 (1087)
|.++|++|+|||++|+.+........ .+.++.+...+...+.+.+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~~~-----~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~---------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSLYD-----VVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD---------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSSCE-----EEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS----------
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCc-----eEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC----------
Q ss_pred HHHHHhhCCCceEEEEecCCCCCHh------hHHHhhcccccCC------------CCcEEEEEcCCc------cccccc
Q 047894 264 VQLKKAVDGKRFLLVLDDVWNEDYS------LWVDLKAPFLAAE------------PNSKMIVTTRNS------NVASTM 319 (1087)
Q Consensus 264 ~~l~~~l~~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~~s~ilvTtr~~------~v~~~~ 319 (1087)
+++.++++||+.-...+ ..+.+...+-.++ .+..+|.++-.. .+..+.
T Consensus 1335 --------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1335 --------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp --------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred --------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Q ss_pred CCC-ceeeCCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHhCCchhHHHHHHhhhcCCCHHHHHHHHhhhccC
Q 047894 320 GPI-EHYNLKSLSDDDCWSIFIKHVFESRDLNAHQISESFRKKVVAKCGGLALAAKTLGGLLRTTRHDAWDDILESKIWD 398 (1087)
Q Consensus 320 ~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~w~~~~~~~~~~ 398 (1087)
... ..+.++..++++-..+|.. +.+..-..+-.+..++..+...+.+-|..+...
T Consensus 1407 lRrf~vi~i~~P~~~~l~~I~~~--------------------il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~---- 1462 (2695)
T 4akg_A 1407 TRHAAILYLGYPSGKSLSQIYEI--------------------YYKAIFKLVPEFRSYTEPFARASVHLYNECKAR---- 1462 (2695)
T ss_dssp HTTEEEEECCCCTTTHHHHHHHH--------------------HHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHH----
T ss_pred hheeeEEEeCCCCHHHHHHHHHH--------------------HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred CCCCCChHHHHHhhhcCCchhhHHHHHHHccC-CCCcccChhhhHHHhHhC
Q 047894 399 LPRQSGVLPVLRLSYHHLPSHLKRCLAYCAIF-PKDYEFNEKEVTFLWMAG 448 (1087)
Q Consensus 399 ~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f-p~~~~i~~~~li~~w~ae 448 (1087)
..+.-+.-|--=+.++-+.|.-+... |....-..+.++++|+-|
T Consensus 1463 ------~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE 1507 (2695)
T 4akg_A 1463 ------YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYE 1507 (2695)
T ss_dssp ------SCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHH
T ss_pred ------cCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHH
No 390
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.14 E-value=0.95 Score=50.73 Aligned_cols=51 Identities=20% Similarity=0.130 Sum_probs=35.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLES 248 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 248 (1087)
..++.|.|.+|+||||+|..++.+....+ ..++|++... +..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEECCC--CHHHHHHHHHHH
Confidence 36899999999999999999987654322 3567776554 344555555543
No 391
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.12 E-value=1.1 Score=45.43 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=47.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCC-CeEEEEEeCCcccHHHHHHHHHHHhhcCCC---------------C--
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKF-DVKAWVCVSDVFDVLGISKALLESITSAAS---------------D-- 255 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------------~-- 255 (1087)
+.+.|.|..|+||||+.....-+.....+.. ...+.+......-..++...+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 3789999999999987665543221111111 234444444443444455555444332210 0
Q ss_pred ---cccHHHHHHHHHHhhCCCceEEEEecCCC
Q 047894 256 ---LKTLNEVQVQLKKAVDGKRFLLVLDDVWN 284 (1087)
Q Consensus 256 ---~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 284 (1087)
....+.+...+...+.+ --+||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 01345555555554433 34789999975
No 392
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.99 E-value=0.14 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|+|.|+.|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998764
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.99 E-value=0.084 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.1
Q ss_pred EEEEEecCCChHHHHHHHHhcccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
+|+|.|..|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999977543
No 394
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.98 E-value=0.36 Score=43.63 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=43.4
Q ss_pred eeeccCCCcCc--ccccccccCCCCcEEEecCCCCCcccCcc-cCCCCCcCEEeecCCc
Q 047894 604 RFLNLADIDIK--SLPESTCKLLNLEILILRNCSRLIKLPPK-MRNLINLNHLDIRGAK 659 (1087)
Q Consensus 604 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 659 (1087)
.+++.+++.++ .+|..+. .+|++|+|++|. +..+|.. |..+++|++|+|.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888899988 8887543 479999999976 7778765 6789999999999986
No 395
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.98 E-value=0.15 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..|.|.|++|+||||+|+.+...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 396
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.95 E-value=0.15 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 397
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.90 E-value=0.33 Score=63.73 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=54.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----CcccHHHHHHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----DLKTLNEVQVQL 266 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 266 (1087)
..+.|.|+|++|+|||+||.++....... =..++|+++...++... ++.++.+.. .....++..+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 44689999999999999999998764422 24578888887765544 334432111 122334555555
Q ss_pred HHhh-CCCceEEEEecCC
Q 047894 267 KKAV-DGKRFLLVLDDVW 283 (1087)
Q Consensus 267 ~~~l-~~kr~LlVlDdv~ 283 (1087)
++.. +.+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5443 3567799999983
No 398
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.83 E-value=0.13 Score=51.94 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998754
No 399
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.82 E-value=0.11 Score=49.68 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
++++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987654
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.77 E-value=0.18 Score=53.35 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999987654
No 401
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.74 E-value=0.14 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997653
No 402
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.73 E-value=0.76 Score=51.95 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=35.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALL 246 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 246 (1087)
..++.|.|.+|+||||+|..++...... .-..++|++.... ..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s--~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMS--AQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSC--HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCC--HHHHHHHHH
Confidence 3589999999999999999998765432 1135778776543 345555554
No 403
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.73 E-value=0.41 Score=52.71 Aligned_cols=101 Identities=12% Similarity=0.199 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-------cCCC-eEEEEEeCCc-ccHHHHHHHHHH
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRD-------SKFD-VKAWVCVSDV-FDVLGISKALLE 247 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~-------~~f~-~~~wv~~s~~-~~~~~~~~~i~~ 247 (1087)
+.++.+..-.. -.-++|.|.+|+|||+|+.++.+.....+ .+-+ .++++-+... ..+.++.+++.+
T Consensus 136 raID~l~pigr-----GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLVR-----GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCBT-----TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeeccccccc-----CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 35666654422 23468999999999999999988754310 0112 5566666644 345555555443
Q ss_pred H--hhc-----CCCCcccHHH-----HHHHHHHhh---CCCceEEEEecC
Q 047894 248 S--ITS-----AASDLKTLNE-----VQVQLKKAV---DGKRFLLVLDDV 282 (1087)
Q Consensus 248 ~--l~~-----~~~~~~~~~~-----~~~~l~~~l---~~kr~LlVlDdv 282 (1087)
. +.. ...+...... ..-.+.+++ +++.+|+++||+
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2 110 0111111211 112344444 378999999998
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.72 E-value=0.15 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999765
No 405
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.63 E-value=0.14 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999887654
No 406
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.61 E-value=0.19 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999965
No 407
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.60 E-value=0.33 Score=52.91 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 175 KAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 175 ~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++.+.+.... ....+|+|+|.+|+||||++..+....
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554332 345789999999999999999987654
No 408
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.56 E-value=0.19 Score=51.03 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=30.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccc---cccCCCeEEEEEeCCc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAV---RDSKFDVKAWVCVSDV 235 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~ 235 (1087)
.-.+++|+|++|+|||||++.++..... ....-...+|+.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 3479999999999999999999753211 1102345777776543
No 409
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.48 E-value=0.92 Score=51.11 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=36.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHH
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLES 248 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 248 (1087)
..++.|.|.+|+||||+|..++...... .-..++|++.... ..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE~~--~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLEMP--AAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSSC--HHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECCCC--HHHHHHHHHHH
Confidence 3689999999999999999988765422 1235778776643 45666666544
No 410
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.44 E-value=0.18 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998764
No 411
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.43 E-value=0.22 Score=52.89 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.++|+|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998753
No 412
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.33 E-value=0.18 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+|||||.+.+..-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999997643
No 413
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.24 E-value=0.17 Score=51.52 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 414
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.15 E-value=1.1 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
-.+++|+|+.|+|||||.+.+..-
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 379999999999999999998764
No 415
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.15 E-value=0.87 Score=51.18 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcc-cHHHHHHHH
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVF-DVLGISKAL 245 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 245 (1087)
+.++.+..-.. -.-++|.|..|+|||+|++++.+.. +-+.++++-+.... .+.++.+++
T Consensus 216 rvID~l~Pigk-----Gqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAK-----GGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEET-----TCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCccc-----CCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 46777765432 2467999999999999999987642 44677888887654 344444443
No 416
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.12 E-value=0.19 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
.+++|+|++|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999873
No 417
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.05 E-value=0.59 Score=52.75 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHH
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKA 244 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~ 244 (1087)
+.++.|..-.. -.-++|.|..|+|||+|+.++.+.. +-+.++++-+... ..+.++.++
T Consensus 221 rvID~l~Pigr-----Gqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVTK-----GGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCBT-----TCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCccC-----CCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 46777765432 2467999999999999999998752 4466777777765 334444444
No 418
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.99 E-value=0.2 Score=53.39 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999874
No 419
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.95 E-value=0.71 Score=51.58 Aligned_cols=101 Identities=25% Similarity=0.292 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHhcccccc---ccCCC-eEEEEEeCCcc-cHHHHHHHHHHHhh
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLA-REVYNDKAVR---DSKFD-VKAWVCVSDVF-DVLGISKALLESIT 250 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa-~~v~~~~~~~---~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~ 250 (1087)
+.++.+..-.. ..-++|+|.+|+|||+|| ..+.+..... .++.+ .++++-+.... .+.++.+.+.+.=.
T Consensus 151 raID~l~Pigr-----GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIGR-----GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCBT-----TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeecccccccc-----CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 46777765432 235799999999999995 4666654310 01244 46777777653 44555555544211
Q ss_pred c--------CCCCcccHHHH----HHHHHHhh--CCCceEEEEecC
Q 047894 251 S--------AASDLKTLNEV----QVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 251 ~--------~~~~~~~~~~~----~~~l~~~l--~~kr~LlVlDdv 282 (1087)
. ..++....... .-.+.+++ +++.+||++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 0 11111111111 11233333 589999999998
No 420
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.94 E-value=0.29 Score=54.38 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLAD--------TPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~--------~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++|.++.++.+...+... .-......+-+.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 35788888888887666321 00000123458899999999999999998754
No 421
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.88 E-value=1.1 Score=49.77 Aligned_cols=96 Identities=22% Similarity=0.246 Sum_probs=54.3
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHhccccccccCCC-eEEEEEeCCcc-cHHHHHHHHHHHhhcC-
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLA-REVYNDKAVRDSKFD-VKAWVCVSDVF-DVLGISKALLESITSA- 252 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~- 252 (1087)
+.++.+..-.. ..-++|.|..|+|||+|| ..+.+.. +-+ .++++-+.+.. .+.++.+.+.+.=...
T Consensus 151 kaID~l~Pigr-----GQR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~ 220 (513)
T 3oaa_A 151 KAVDSMIPIGR-----GQRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALAN 220 (513)
T ss_dssp HHHHHHSCCBT-----TCBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTT
T ss_pred eeecccccccc-----CCEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccc
Confidence 36676655432 235799999999999996 5666642 333 35777777654 4455555544321111
Q ss_pred -------CCCcccHHH----HHHHHHHhh--CCCceEEEEecC
Q 047894 253 -------ASDLKTLNE----VQVQLKKAV--DGKRFLLVLDDV 282 (1087)
Q Consensus 253 -------~~~~~~~~~----~~~~l~~~l--~~kr~LlVlDdv 282 (1087)
.++...... ..-.+.+++ +++.+||++||+
T Consensus 221 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 221 TIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 111111111 111223333 689999999998
No 422
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.84 E-value=0.2 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|+|.|++|+||||+|+.+....
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998653
No 423
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.83 E-value=1.2 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|.|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998654
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.81 E-value=0.16 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+|+|+|+.|+||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998753
No 425
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.75 E-value=0.24 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
++|+|.|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999999874
No 426
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.72 E-value=0.38 Score=53.35 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=57.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc-CCCeEEEEEeCCc-ccHHHHHHHHHHHhhcC--
Q 047894 177 KILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDKAVRDS-KFDVKAWVCVSDV-FDVLGISKALLESITSA-- 252 (1087)
Q Consensus 177 ~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-- 252 (1087)
+.++.+..-.. -.-++|.|.+|+|||+|+..++++...... .=+.++++-+... ..+.++.+++.+.=...
T Consensus 141 r~ID~l~pigr-----GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLVR-----GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCBT-----TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeecccc-----CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 35666654432 234688999999999999999887553210 1135566666654 34556666655431110
Q ss_pred -----CCCcccHHH-----HHHHHHHhh---CCCceEEEEecC
Q 047894 253 -----ASDLKTLNE-----VQVQLKKAV---DGKRFLLVLDDV 282 (1087)
Q Consensus 253 -----~~~~~~~~~-----~~~~l~~~l---~~kr~LlVlDdv 282 (1087)
..+...... ..-.+.+++ +++.+|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 011111111 112234444 378999999997
No 427
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.70 E-value=0.19 Score=48.03 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++.|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999988754
No 428
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.65 E-value=0.21 Score=51.92 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999865
No 429
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.64 E-value=0.25 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998654
No 430
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.60 E-value=0.21 Score=51.66 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999764
No 431
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.60 E-value=0.15 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=15.9
Q ss_pred EEEEEEecCCChHHHHHHHHh-cc
Q 047894 194 VVIPIVGMGGIGKTTLAREVY-ND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~-~~ 216 (1087)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 53
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.58 E-value=1.3 Score=51.57 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.+..-
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 58999999999999999998753
No 433
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.58 E-value=0.24 Score=53.51 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999987654
No 434
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.47 E-value=0.23 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
++|.|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.47 E-value=0.22 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999774
No 436
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.45 E-value=0.21 Score=48.49 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 437
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.45 E-value=0.17 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998764
No 438
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.43 E-value=0.29 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 439
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.42 E-value=0.24 Score=48.54 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.-.|+|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999987653
No 440
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.42 E-value=0.24 Score=47.81 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
+.|.|.|+.|+||||||.++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 441
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.38 E-value=0.24 Score=48.15 Aligned_cols=89 Identities=12% Similarity=0.071 Sum_probs=56.1
Q ss_pred hhcccCCCCcccEEEecCC-CCcc-----cCccccCCccceeeccCCCcCc-----ccccccccCCCCcEEEecCCCCCc
Q 047894 570 LSDLLPKFKRLRMLSLQGY-CIGE-----LPIPFEELRLLRFLNLADIDIK-----SLPESTCKLLNLEILILRNCSRLI 638 (1087)
Q Consensus 570 ~~~~~~~~~~Lr~L~l~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~ 638 (1087)
+..++.+-..|+.|+|+++ .+.. +-+.+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|..-.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3445566678888888875 6532 3344556677888888888876 344556666778888888765211
Q ss_pred ----ccCcccCCCCCcCEEeecCC
Q 047894 639 ----KLPPKMRNLINLNHLDIRGA 658 (1087)
Q Consensus 639 ----~lp~~i~~L~~L~~L~l~~~ 658 (1087)
.+-..+..=+.|++|+++++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 12233444455777777654
No 442
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.37 E-value=0.23 Score=49.86 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998753
No 443
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.37 E-value=0.34 Score=57.11 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 166 PEVFGREEDKAKILDMVLADTPRDHPNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 46899998888888777643 368999999999999999998754
No 444
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.34 E-value=0.22 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.++.-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999999999998764
No 445
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.31 E-value=0.22 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999865
No 446
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.27 E-value=0.23 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998753
No 447
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.25 E-value=0.23 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 448
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.24 E-value=0.2 Score=49.87 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998764
No 449
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.24 E-value=0.27 Score=49.85 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
....+|+|.|..|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34479999999999999999998764
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.23 E-value=1.4 Score=51.59 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=64.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccC--CC-eEEEEEeCC----cccHHHHH--------------HHHHHHhhcC
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSK--FD-VKAWVCVSD----VFDVLGIS--------------KALLESITSA 252 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~--f~-~~~wv~~s~----~~~~~~~~--------------~~i~~~l~~~ 252 (1087)
.+++|+|+.|+|||||++.++.-.....+. +. .+.++.-.. ..++.+.+ .++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 489999999999999999998753321111 11 233332111 11222222 2223333221
Q ss_pred CC------CcccHHHHHHHHHHhhCCCceEEEEecCCCC-CHhhHHHhhccccc--CCCCcEEEEEcCCccccc
Q 047894 253 AS------DLKTLNEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA--AEPNSKMIVTTRNSNVAS 317 (1087)
Q Consensus 253 ~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~~s~ilvTtr~~~v~~ 317 (1087)
.. ..+.-+...-.+...|..++-+++||.--.. |...-..+...+.. ...|..||++|-+...+.
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~ 536 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 536 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 11 1112233334577778888899999986332 22222223322222 124667888888765544
No 451
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.19 E-value=0.23 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+|||||++.+..-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998753
No 452
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.16 E-value=1.2 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 58999999999999999998764
No 453
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.11 E-value=0.24 Score=51.11 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998754
No 454
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.92 E-value=0.25 Score=50.54 Aligned_cols=23 Identities=43% Similarity=0.535 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998764
No 455
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.90 E-value=0.26 Score=50.63 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.90 E-value=0.24 Score=55.23 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998753
No 457
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.90 E-value=0.25 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 458
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.87 E-value=0.31 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.208 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..++|.|.|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3478999999999999999999874
No 459
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.86 E-value=0.25 Score=50.26 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..|.|.|++|+||||+|+.+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998753
No 460
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.85 E-value=0.31 Score=50.53 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
....++.+.|.||+||||++..+.....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999975443
No 461
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.75 E-value=0.48 Score=46.52 Aligned_cols=109 Identities=11% Similarity=0.036 Sum_probs=54.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCC-cccHHHHHHHHHHHhhcCCC--CcccHHHHHHHHHHh
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSD-VFDVLGISKALLESITSAAS--DLKTLNEVQVQLKKA 269 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~ 269 (1087)
..+..++|..|.||||.|.....+...+ ...+.++-..-+ .+... .+...++.... ...+.+ .+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~d~R~ge~----~i~s~~g~~~~a~~~~~~~----~~~~~ 97 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCIDNRYSEE----DVVSHNGLKVKAVPVSASK----DIFKH 97 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC---------------------CCEEECSSGG----GGGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccCCcchHH----HHHhhcCCeeEEeecCCHH----HHHHH
Confidence 3788999999999999998888776533 233333321111 11222 23333322111 011111 22333
Q ss_pred hCCCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCcc
Q 047894 270 VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSN 314 (1087)
Q Consensus 270 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~ 314 (1087)
+.++--+|++|.+.--+.+.. +....+.+ .|-.||+|-++.+
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V-~~l~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIV-EVVQVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHH-HHHHHHHH--TTCEEEEEECSBC
T ss_pred HhcCCCEEEEECcccCCHHHH-HHHHHHhh--CCCEEEEEecccc
Confidence 333344999999855433333 33333333 3779999999654
No 462
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.75 E-value=0.26 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998764
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.67 E-value=0.27 Score=52.33 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999863
No 464
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.67 E-value=0.27 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.64 E-value=0.26 Score=51.20 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||++.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 466
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.62 E-value=0.77 Score=44.96 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.5
Q ss_pred EEEEEecCCChHHHHHHHHhccccc
Q 047894 195 VIPIVGMGGIGKTTLAREVYNDKAV 219 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~~~~ 219 (1087)
.|+|-|..|+||||.++.+++....
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999887653
No 467
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.58 E-value=0.27 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+|||||.+.++.-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999998653
No 468
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.58 E-value=0.32 Score=50.21 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=55.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc-ccHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHhhC
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV-FDVLGISKALLESITSAASDLKTLNEVQVQLKKAVD 271 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (1087)
..+++|+|+.|+|||||++.+..-... .+...+++.-... +-.... ..+..+-.. ..+... +...+...+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~---~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~-gl~~~~---l~~~la~aL~ 96 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHK-KSIVNQREV-GEDTKS---FADALRAALR 96 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHH---HCCCEEEEEESSCCSCCCCS-SSEEEEEEB-TTTBSC---HHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCC---CCCCEEEEcCCcceeecCCc-ceeeeHHHh-CCCHHH---HHHHHHHHHh
Confidence 368999999999999999998764321 1122333321110 000000 000000000 001112 2445666666
Q ss_pred CCceEEEEecCCCCCHhhHHHhhcccccCCCCcEEEEEcCCccc
Q 047894 272 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAEPNSKMIVTTRNSNV 315 (1087)
Q Consensus 272 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ilvTtr~~~v 315 (1087)
.++=+|++|...+ ......+.... ..|..|++||-+...
T Consensus 97 ~~p~illlDEp~D--~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCCC--HHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 6777899999863 23332322221 246678888876543
No 469
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.41 E-value=0.26 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.33 E-value=0.33 Score=45.67 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.-|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357999999999999999987653
No 471
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.31 E-value=0.26 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+|||||++.+..-.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 589999999999999999987643
No 472
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.29 E-value=0.34 Score=48.98 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKA 218 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~ 218 (1087)
...+|+|.|++|+||||+++.+.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999988654
No 473
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.23 E-value=0.29 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997653
No 474
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.22 E-value=0.29 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998654
No 475
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.16 E-value=0.29 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+|||||.+.++.-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999998653
No 476
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.02 E-value=0.3 Score=46.08 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999765
No 477
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.96 E-value=0.65 Score=46.84 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=26.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCCeEEEE
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWV 230 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv 230 (1087)
.+|.|.|+.|+||||+++.+....... .+..+...
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITRT 62 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeeee
Confidence 589999999999999999998876432 45533333
No 478
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.85 E-value=0.39 Score=46.65 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 479
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.79 E-value=0.33 Score=46.45 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 458999999999999999987653
No 480
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=86.74 E-value=0.8 Score=51.10 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=46.8
Q ss_pred EEEEEEecCCChHHHHH-HHHhccccccccCCC-eEEEEEeCCcc-cHHHHHHHHHHHhh--------cCCCCccc----
Q 047894 194 VVIPIVGMGGIGKTTLA-REVYNDKAVRDSKFD-VKAWVCVSDVF-DVLGISKALLESIT--------SAASDLKT---- 258 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~--------~~~~~~~~---- 258 (1087)
.-++|+|.+|+|||+|| ..+.+.. ..+ .++++-+.... .+.++.+.+.+.=. ...++...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 35789999999999996 5676653 234 34677777653 34444444433110 01111111
Q ss_pred ----HHHHHHHHHHhhCCCceEEEEecC
Q 047894 259 ----LNEVQVQLKKAVDGKRFLLVLDDV 282 (1087)
Q Consensus 259 ----~~~~~~~l~~~l~~kr~LlVlDdv 282 (1087)
.-...+.++. +++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1122233333 589999999998
No 481
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=86.71 E-value=0.38 Score=47.60 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
--|+|+|.+|+|||||+..+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999888764
No 482
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.65 E-value=0.41 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+|||||++.+..-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 589999999999999999987643
No 483
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.55 E-value=1.9 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|+|||||++.+..-.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999886643
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.53 E-value=0.38 Score=49.14 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..|+|.|..|+||||+++.+.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 689999999999999999998754
No 485
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.50 E-value=0.32 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
--|.|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 486
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.48 E-value=0.36 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999865
No 487
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.43 E-value=0.33 Score=49.44 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
....+|+|+|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999864
No 488
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.37 E-value=0.38 Score=51.27 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=29.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDV 235 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 235 (1087)
...++|+|+|-||+||||+|..++......+ ..++-|.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G---~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG---KRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC---CeEEEEeCCCC
Confidence 4558889899999999999998876554322 24566666543
No 489
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.35 E-value=0.77 Score=60.43 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=56.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCCeEEEEEeCCcccHHHHHHHHHHHhhcCCC-----CcccHHHHHHHH
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAVRDSKFDVKAWVCVSDVFDVLGISKALLESITSAAS-----DLKTLNEVQVQL 266 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 266 (1087)
...++.|.|.+|+||||||.+++...... -..++|++.....+... ++.++.... +..+.+++...+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~---G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 34689999999999999999998765422 23678888877665431 444443221 234566666666
Q ss_pred HHhh-CCCceEEEEecCC
Q 047894 267 KKAV-DGKRFLLVLDDVW 283 (1087)
Q Consensus 267 ~~~l-~~kr~LlVlDdv~ 283 (1087)
+... +.+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 5444 3456699999874
No 490
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.35 E-value=0.35 Score=45.81 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3789999999999999998754
No 491
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.35 E-value=0.35 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.++.|+|.+|+|||||+..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999998763
No 492
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.20 E-value=0.18 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=18.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
..+|+|.|..|+||||+|+.+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999997743
No 493
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.14 E-value=0.37 Score=49.97 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 047894 195 VIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 195 vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999998764
No 494
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.13 E-value=2.6 Score=46.55 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 047894 191 PNFVVIPIVGMGGIGKTTLAREVYN 215 (1087)
Q Consensus 191 ~~~~vv~I~G~~GvGKTtLa~~v~~ 215 (1087)
...++..|.|.+|.||||+.++.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 5678999999999999999999875
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.12 E-value=0.86 Score=45.45 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccc
Q 047894 192 NFVVIPIVGMGGIGKTTLAREVYNDKAV 219 (1087)
Q Consensus 192 ~~~vv~I~G~~GvGKTtLa~~v~~~~~~ 219 (1087)
....|.|.|..|+||||+++.+.+....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999887653
No 496
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.08 E-value=0.35 Score=47.15 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999997653
No 497
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.04 E-value=0.35 Score=52.66 Aligned_cols=24 Identities=29% Similarity=0.087 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..+++|+|++|+|||||++.+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999864
No 498
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.02 E-value=1.5 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhccc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYNDK 217 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~~ 217 (1087)
.+++|+|+.|.|||||++.+..-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 589999999999999999886543
No 499
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.97 E-value=0.37 Score=49.68 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 047894 194 VVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 194 ~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 500
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.83 E-value=0.5 Score=45.64 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 047894 193 FVVIPIVGMGGIGKTTLAREVYND 216 (1087)
Q Consensus 193 ~~vv~I~G~~GvGKTtLa~~v~~~ 216 (1087)
..-|+|+|.+|+|||||...+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
Done!