Query 047896
Match_columns 475
No_of_seqs 281 out of 2618
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05562 Peptidases_S53_like Pe 100.0 1.5E-29 3.3E-34 250.7 16.3 181 1-331 90-274 (275)
2 cd07497 Peptidases_S8_14 Pepti 99.9 3.9E-27 8.5E-32 237.1 16.2 88 206-295 217-311 (311)
3 cd04857 Peptidases_S8_Tripepti 99.9 1.8E-26 3.9E-31 237.9 16.4 81 208-297 327-411 (412)
4 cd07474 Peptidases_S8_subtilis 99.9 4.3E-26 9.3E-31 227.9 18.1 174 1-329 119-295 (295)
5 cd07475 Peptidases_S8_C5a_Pept 99.9 5.4E-26 1.2E-30 232.5 16.6 109 206-331 230-346 (346)
6 cd07479 Peptidases_S8_SKI-1_li 99.9 7.3E-26 1.6E-30 222.3 15.6 80 210-298 166-253 (255)
7 cd05561 Peptidases_S8_4 Peptid 99.9 1E-25 2.2E-30 219.2 15.4 83 210-322 157-239 (239)
8 cd07493 Peptidases_S8_9 Peptid 99.9 2E-25 4.4E-30 219.6 15.8 77 209-296 185-261 (261)
9 PTZ00262 subtilisin-like prote 99.9 1.6E-25 3.5E-30 238.6 13.5 88 227-336 531-618 (639)
10 cd07476 Peptidases_S8_thiazoli 99.9 7.2E-25 1.6E-29 216.5 15.4 143 1-299 106-253 (267)
11 cd07489 Peptidases_S8_5 Peptid 99.9 1.1E-24 2.4E-29 219.9 17.1 110 212-333 190-300 (312)
12 cd07478 Peptidases_S8_CspA-lik 99.9 6.4E-24 1.4E-28 224.2 20.6 100 201-322 349-455 (455)
13 cd07481 Peptidases_S8_Bacillop 99.9 2.6E-24 5.7E-29 212.2 15.5 77 209-296 186-264 (264)
14 cd04847 Peptidases_S8_Subtilis 99.9 1.3E-24 2.8E-29 217.3 12.6 82 213-296 201-291 (291)
15 cd07487 Peptidases_S8_1 Peptid 99.9 1.6E-23 3.5E-28 205.6 17.0 156 1-296 106-264 (264)
16 cd04852 Peptidases_S8_3 Peptid 99.9 2.8E-23 6.1E-28 209.2 14.8 134 1-296 173-307 (307)
17 cd07483 Peptidases_S8_Subtilis 99.9 5.4E-23 1.2E-27 205.7 14.7 72 209-296 220-291 (291)
18 cd07494 Peptidases_S8_10 Pepti 99.9 2.8E-22 6E-27 201.1 16.4 69 230-299 218-286 (298)
19 PF00082 Peptidase_S8: Subtila 99.9 2.4E-23 5.1E-28 206.2 8.0 106 210-331 177-282 (282)
20 cd07490 Peptidases_S8_6 Peptid 99.9 2.7E-22 6E-27 196.2 15.0 68 224-296 187-254 (254)
21 cd07488 Peptidases_S8_2 Peptid 99.9 3.5E-22 7.6E-27 194.9 14.0 61 223-294 180-246 (247)
22 KOG1114 Tripeptidyl peptidase 99.9 5.1E-22 1.1E-26 212.4 15.4 217 210-474 454-688 (1304)
23 cd07498 Peptidases_S8_15 Pepti 99.9 4.2E-22 9.1E-27 193.6 13.5 144 1-294 97-242 (242)
24 cd07485 Peptidases_S8_Fervidol 99.9 5.7E-22 1.2E-26 196.5 14.2 141 1-294 124-273 (273)
25 cd04077 Peptidases_S8_PCSK9_Pr 99.9 7.8E-22 1.7E-26 193.4 14.6 73 210-297 183-255 (255)
26 cd07496 Peptidases_S8_13 Pepti 99.9 9.2E-22 2E-26 196.1 14.8 78 209-294 202-285 (285)
27 cd04842 Peptidases_S8_Kp43_pro 99.9 1.7E-21 3.6E-26 194.5 15.5 88 207-296 198-293 (293)
28 cd07484 Peptidases_S8_Thermita 99.9 2.2E-21 4.8E-26 190.6 14.9 135 1-298 125-259 (260)
29 cd07477 Peptidases_S8_Subtilis 99.9 2.9E-21 6.3E-26 185.8 15.3 67 211-294 163-229 (229)
30 cd04843 Peptidases_S8_11 Pepti 99.9 9E-21 1.9E-25 188.2 15.2 79 210-296 193-277 (277)
31 cd07473 Peptidases_S8_Subtilis 99.8 1.3E-20 2.7E-25 185.0 15.0 72 209-296 188-259 (259)
32 cd07492 Peptidases_S8_8 Peptid 99.8 2.6E-20 5.7E-25 178.8 14.7 60 228-296 163-222 (222)
33 cd07482 Peptidases_S8_Lantibio 99.8 3.1E-20 6.8E-25 185.3 14.4 82 206-294 199-294 (294)
34 cd07491 Peptidases_S8_7 Peptid 99.8 6.9E-20 1.5E-24 179.0 11.9 62 1-62 102-169 (247)
35 cd04848 Peptidases_S8_Autotran 99.8 1.1E-19 2.3E-24 178.1 13.2 72 213-296 196-267 (267)
36 cd04059 Peptidases_S8_Protein_ 99.8 1.7E-19 3.7E-24 180.6 14.2 73 210-296 218-297 (297)
37 cd07480 Peptidases_S8_12 Pepti 99.8 2.3E-19 4.9E-24 180.1 14.1 86 226-327 211-296 (297)
38 KOG1153 Subtilisin-related pro 99.8 1.2E-18 2.7E-23 175.1 8.5 133 3-296 319-461 (501)
39 KOG4266 Subtilisin kexin isozy 99.7 1E-16 2.2E-21 165.8 17.0 103 207-331 355-465 (1033)
40 cd00306 Peptidases_S8_S53 Pept 99.7 1.7E-16 3.7E-21 151.7 14.3 62 226-294 180-241 (241)
41 cd02120 PA_subtilisin_like PA_ 99.6 1.8E-15 3.9E-20 132.5 12.2 121 72-196 2-125 (126)
42 cd02133 PA_C5a_like PA_C5a_lik 99.6 3.6E-15 7.8E-20 133.8 12.2 116 92-220 24-142 (143)
43 cd04816 PA_SaNapH_like PA_SaNa 99.4 3.9E-12 8.4E-17 111.0 11.7 95 95-192 18-117 (122)
44 cd02127 PA_hPAP21_like PA_hPAP 99.4 3E-12 6.6E-17 110.8 10.4 89 108-198 21-117 (118)
45 cd04056 Peptidases_S53 Peptida 99.4 2.7E-12 5.8E-17 132.4 11.7 66 1-66 119-198 (361)
46 cd02129 PA_hSPPL_like PA_hSPPL 99.4 2.6E-12 5.6E-17 110.9 9.6 93 93-190 19-115 (120)
47 cd02122 PA_GRAIL_like PA _GRAI 99.3 3.8E-12 8.3E-17 113.2 9.0 89 107-196 43-137 (138)
48 cd02130 PA_ScAPY_like PA_ScAPY 99.3 2.1E-11 4.6E-16 106.4 11.7 96 93-195 21-120 (122)
49 PF02225 PA: PA domain; Inter 99.3 3.4E-12 7.4E-17 107.0 5.9 91 95-187 7-101 (101)
50 cd02124 PA_PoS1_like PA_PoS1_l 99.3 3.4E-11 7.4E-16 105.9 11.4 95 96-192 28-124 (129)
51 cd04818 PA_subtilisin_1 PA_sub 99.3 1.5E-11 3.2E-16 106.7 8.9 87 107-195 26-116 (118)
52 cd02125 PA_VSR PA_VSR: Proteas 99.2 3.9E-11 8.6E-16 105.2 10.2 88 107-195 21-125 (127)
53 cd02132 PA_GO-like PA_GO-like: 99.2 3.4E-11 7.3E-16 107.5 9.9 91 95-194 39-136 (139)
54 cd02126 PA_EDEM3_like PA_EDEM3 99.2 2.2E-11 4.8E-16 106.8 8.6 85 108-194 27-123 (126)
55 cd00538 PA PA: Protease-associ 99.2 3.4E-11 7.3E-16 104.9 8.4 85 107-192 29-121 (126)
56 cd04813 PA_1 PA_1: Protease-as 99.2 5.8E-11 1.3E-15 102.7 8.7 81 107-190 26-112 (117)
57 COG1404 AprE Subtilisin-like s 99.2 3E-10 6.6E-15 119.9 15.2 77 208-297 316-398 (508)
58 cd04817 PA_VapT_like PA_VapT_l 99.2 8.8E-11 1.9E-15 104.2 8.3 87 95-190 37-134 (139)
59 cd02123 PA_C_RZF_like PA_C-RZF 99.1 1.4E-10 3.1E-15 105.1 8.9 84 108-192 50-142 (153)
60 cd04819 PA_2 PA_2: Protease-as 99.0 3.7E-09 8.1E-14 92.9 11.2 91 93-191 22-121 (127)
61 PF06280 DUF1034: Fn3-like dom 98.9 2.7E-08 5.8E-13 85.4 12.0 81 390-471 8-112 (112)
62 cd04815 PA_M28_2 PA_M28_2: Pro 98.5 1.8E-07 4E-12 82.9 7.2 78 116-194 33-131 (134)
63 cd02128 PA_TfR PA_TfR: Proteas 98.3 1.4E-06 3E-11 80.8 7.8 94 93-189 28-155 (183)
64 cd04814 PA_M28_1 PA_M28_1: Pro 98.2 9.4E-06 2E-10 72.4 8.9 65 93-159 19-101 (142)
65 cd04822 PA_M28_1_3 PA_M28_1_3: 98.1 2E-05 4.4E-10 71.0 8.9 93 93-186 19-131 (151)
66 cd04820 PA_M28_1_1 PA_M28_1_1: 98.0 1.1E-05 2.4E-10 71.5 6.6 64 93-158 21-96 (137)
67 KOG3920 Uncharacterized conser 98.0 9.7E-06 2.1E-10 71.8 4.7 102 95-202 65-176 (193)
68 cd02121 PA_GCPII_like PA_GCPII 97.9 2.7E-05 5.8E-10 74.6 7.9 57 93-157 44-105 (220)
69 KOG2442 Uncharacterized conser 97.9 2.2E-05 4.7E-10 81.1 7.6 85 107-195 83-173 (541)
70 PF14874 PapD-like: Flagellar- 97.5 0.0034 7.4E-08 52.5 12.9 94 375-474 8-101 (102)
71 KOG4628 Predicted E3 ubiquitin 97.4 0.00051 1.1E-08 69.5 7.6 81 108-189 62-149 (348)
72 cd02131 PA_hNAALADL2_like PA_h 97.3 0.00025 5.5E-09 63.4 4.4 61 93-157 14-74 (153)
73 cd04821 PA_M28_1_2 PA_M28_1_2: 96.4 0.014 2.9E-07 53.2 7.7 64 93-157 21-102 (157)
74 PF10633 NPCBM_assoc: NPCBM-as 95.2 0.098 2.1E-06 41.5 7.3 57 391-447 6-63 (78)
75 PF11614 FixG_C: IG-like fold 94.8 0.58 1.3E-05 40.1 11.7 56 391-447 32-87 (118)
76 COG4934 Predicted protease [Po 91.4 1.7 3.6E-05 50.8 11.6 41 21-61 347-395 (1174)
77 COG1470 Predicted membrane pro 90.8 2 4.4E-05 45.2 10.5 71 391-461 398-469 (513)
78 PF00345 PapD_N: Pili and flag 90.7 3.2 7E-05 35.6 10.4 69 390-460 14-89 (122)
79 PF06030 DUF916: Bacterial pro 90.4 2.8 6E-05 36.4 9.6 69 390-460 27-119 (121)
80 KOG3526 Subtilisin-like propro 89.1 0.081 1.8E-06 53.6 -1.2 70 256-330 379-456 (629)
81 PF00635 Motile_Sperm: MSP (Ma 83.5 7.4 0.00016 32.3 8.2 53 391-446 19-71 (109)
82 TIGR02745 ccoG_rdxA_fixG cytoc 82.1 5.6 0.00012 42.3 8.3 55 391-446 347-401 (434)
83 PF07718 Coatamer_beta_C: Coat 80.0 14 0.00029 33.0 8.7 66 393-460 72-138 (140)
84 COG1470 Predicted membrane pro 79.8 29 0.00064 36.9 12.4 70 391-461 285-360 (513)
85 PF07610 DUF1573: Protein of u 71.2 13 0.00028 26.1 5.1 44 396-442 2-45 (45)
86 smart00635 BID_2 Bacterial Ig- 71.0 17 0.00036 28.8 6.4 40 419-463 4-43 (81)
87 PLN03080 Probable beta-xylosid 65.1 24 0.00051 40.5 8.4 78 391-469 685-778 (779)
88 PRK15308 putative fimbrial pro 62.6 54 0.0012 31.9 9.2 54 391-445 32-101 (234)
89 PF07705 CARDB: CARDB; InterP 62.2 38 0.00082 27.1 7.1 52 390-445 19-72 (101)
90 PRK15098 beta-D-glucoside gluc 58.1 25 0.00055 40.2 7.1 55 391-447 668-730 (765)
91 PF00927 Transglut_C: Transglu 54.7 84 0.0018 26.0 8.1 56 390-447 15-79 (107)
92 PF12690 BsuPI: Intracellular 51.6 59 0.0013 26.1 6.3 22 425-447 52-73 (82)
93 PF05506 DUF756: Domain of unk 50.0 1.3E+02 0.0029 24.1 9.5 47 390-442 18-65 (89)
94 KOG2195 Transferrin receptor a 44.8 21 0.00046 40.3 3.6 39 118-157 180-218 (702)
95 KOG3525 Subtilisin-like propro 41.6 15 0.00034 38.9 1.9 74 257-331 251-324 (431)
96 PF13598 DUF4139: Domain of un 36.0 1.6E+02 0.0035 29.4 8.3 25 391-415 243-267 (317)
97 PRK09918 putative fimbrial cha 35.0 3.8E+02 0.0082 25.8 10.2 52 390-444 38-94 (230)
98 PF08260 Kinin: Insect kinin p 34.3 19 0.00041 16.1 0.5 6 212-217 3-8 (8)
99 PF02845 CUE: CUE domain; Int 33.1 38 0.00083 23.2 2.2 24 272-295 5-28 (42)
100 TIGR00845 caca sodium/calcium 31.4 3.5E+02 0.0077 31.7 10.6 50 392-442 416-472 (928)
101 cd00407 Urease_beta Urease bet 30.2 1.2E+02 0.0027 25.4 5.0 50 390-440 18-81 (101)
102 PF04744 Monooxygenase_B: Mono 30.1 1.2E+02 0.0025 31.5 5.9 49 391-443 264-334 (381)
103 PRK13203 ureB urease subunit b 29.5 1.3E+02 0.0027 25.3 5.0 50 390-440 18-81 (102)
104 TIGR00192 urease_beta urease, 29.2 1.4E+02 0.003 25.1 5.1 49 391-440 19-81 (101)
105 PRK15233 putative fimbrial cha 26.1 4.6E+02 0.0099 25.7 9.1 55 390-447 54-113 (246)
106 PRK15019 CsdA-binding activato 25.9 61 0.0013 29.2 2.7 29 260-289 81-109 (147)
107 PF07233 DUF1425: Protein of u 25.0 3.8E+02 0.0083 21.8 7.4 55 389-446 23-82 (94)
108 TIGR01451 B_ant_repeat conserv 24.9 2.7E+02 0.0059 20.1 5.7 38 390-429 12-50 (53)
109 TIGR03391 FeS_syn_CsdE cystein 24.6 67 0.0015 28.6 2.8 31 258-289 74-104 (138)
110 PF14016 DUF4232: Protein of u 24.3 4.6E+02 0.0099 22.5 9.2 80 390-470 18-112 (131)
111 PF08029 HisG_C: HisG, C-termi 24.2 1.1E+02 0.0025 24.1 3.7 27 126-155 45-71 (75)
112 PRK13202 ureB urease subunit b 23.8 2E+02 0.0043 24.3 5.2 48 392-440 21-82 (104)
113 PRK15188 fimbrial chaperone pr 23.7 6.2E+02 0.014 24.4 9.5 56 390-447 41-101 (228)
114 PRK09926 putative chaperone pr 23.7 6.8E+02 0.015 24.3 9.9 53 390-445 39-101 (246)
115 PF02368 Big_2: Bacterial Ig-l 23.7 39 0.00083 26.4 1.0 37 419-461 4-40 (79)
116 PRK13205 ureB urease subunit b 23.4 1.8E+02 0.0039 26.3 5.1 50 390-440 18-81 (162)
117 PF05753 TRAP_beta: Translocon 23.3 5.4E+02 0.012 23.9 8.7 56 390-447 38-100 (181)
118 PF01345 DUF11: Domain of unkn 22.7 1.8E+02 0.004 22.3 4.7 31 390-420 41-72 (76)
119 PRK15299 fimbrial chaperone pr 22.5 6.9E+02 0.015 23.9 10.1 53 390-445 36-96 (227)
120 PRK13201 ureB urease subunit b 22.4 2E+02 0.0043 25.4 5.1 49 391-440 19-81 (136)
121 PF04255 DUF433: Protein of un 22.1 66 0.0014 23.7 1.9 40 253-292 9-54 (56)
122 PRK09296 cysteine desufuration 22.0 81 0.0018 28.0 2.7 29 260-289 71-99 (138)
123 smart00237 Calx_beta Domains i 21.5 4.3E+02 0.0092 21.1 8.2 49 393-442 19-73 (90)
124 PF00699 Urease_beta: Urease b 21.5 1.2E+02 0.0026 25.4 3.4 16 390-405 17-32 (100)
125 PRK13204 ureB urease subunit b 20.8 2.1E+02 0.0045 25.9 5.0 50 390-440 41-104 (159)
126 COG0832 UreB Urea amidohydrola 20.8 2.5E+02 0.0054 23.6 5.1 49 391-440 19-81 (106)
127 cd09030 DUF1425 Putative perip 20.4 4.1E+02 0.0088 21.8 6.6 54 390-446 32-90 (101)
128 PF02657 SufE: Fe-S metabolism 20.1 98 0.0021 26.9 2.8 33 257-290 59-91 (125)
No 1
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.96 E-value=1.5e-29 Score=250.70 Aligned_cols=181 Identities=28% Similarity=0.319 Sum_probs=137.2
Q ss_pred CCcEEEeccCCCCCCC-CCCHHHHHHHHHHhC-CcEEEEcCCCCCCCC-CCCCCCCCCeEEEEeeeccceeEEEEEeCCC
Q 047896 1 GVDVISISYGSPPLPF-YDDPIASAAFTAVRN-GIFVSCAAGNKGPDP-SSSTNGAPWILTVGASTTDRSIVASAQLGNH 77 (475)
Q Consensus 1 GvDVIn~SlG~~~~~~-~~d~~a~aa~~a~~~-GV~vV~AAGN~Gp~~-~t~~~~ap~visVaAs~~d~~~~~~~~~g~g 77 (475)
|+||||||||....++ .+.++..++.+|.++ ||+||+||||+|+.. ...++..|++|+|||...+....
T Consensus 90 g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~-------- 161 (275)
T cd05562 90 GADIIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPA-------- 161 (275)
T ss_pred CCCEEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcc--------
Confidence 7999999999864443 345788888899987 999999999999854 33467889999999864221100
Q ss_pred ceEeEEeeeeccCCCCceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecC
Q 047896 78 ATYDVEILFMLVNFTSMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDK 157 (475)
Q Consensus 78 ~~~~g~s~~~~~~~~~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~ 157 (475)
+.. +.
T Consensus 162 ---------------------------------~~s--------------------~~---------------------- 166 (275)
T cd05562 162 ---------------------------------FGS--------------------DP---------------------- 166 (275)
T ss_pred ---------------------------------ccc--------------------cc----------------------
Confidence 000 00
Q ss_pred CCccccccccccccEEEEchhhhhhHHHhhhcCCCCceEEEeecccccCCCceecccCCCCCCCCCCCccCcEEecCc-c
Q 047896 158 FDAYSAILETHVLPAVQVGYATGESIKAYINSTSSPTVAILLRTGNKKSAPEVASLSARGPNKVSPGILKPDIIGPGV-S 236 (475)
Q Consensus 158 ~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~i~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~-~ 236 (475)
..+ . .....+.|+++||.. ...+||||+|||+ +
T Consensus 167 ~~~-------------------------------------------~-~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~ 200 (275)
T cd05562 167 APG-------------------------------------------G-TPSSFDPVGIRLPTP--EVRQKPDVTAPDGVN 200 (275)
T ss_pred ccC-------------------------------------------C-CcccccCCcccCcCC--CCCcCCeEEcCCccc
Confidence 000 0 011245578888876 4689999999965 4
Q ss_pred eEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccccCCCCccccCCCCCCCCc
Q 047896 237 ILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTADIVNLEGKPIINNYNLLPAEL 316 (475)
Q Consensus 237 I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~~~~~~~ 316 (475)
+.+.+.. +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++. .+..+
T Consensus 201 ~~~~~~~---------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d 259 (275)
T cd05562 201 GTVDGDG---------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYD 259 (275)
T ss_pred ccCCCcC---------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCC
Confidence 5555544 68999999999999999999999999999999999999999998753 23346
Q ss_pred cccCccccCccccCC
Q 047896 317 FAVGAGHVNPSKAND 331 (475)
Q Consensus 317 ~~~G~G~vn~~~A~~ 331 (475)
.++|||+||+.+|++
T Consensus 260 ~~~G~G~vda~~Av~ 274 (275)
T cd05562 260 NASGSGLVDADRAVA 274 (275)
T ss_pred CCcCcCcccHHHHhh
Confidence 789999999999986
No 2
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=3.9e-27 Score=237.12 Aligned_cols=88 Identities=31% Similarity=0.454 Sum_probs=73.0
Q ss_pred CCCceecccCCCCCCCCCCCccCcEEecCcceEeecCCCcc-cccccCcceEEeCCCccchHHHHHHHHHHHhcCC----
Q 047896 206 SAPEVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQE-NITKTKATFEIADGTSMSCPHLSGIAALLKSTHP---- 280 (475)
Q Consensus 206 ~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~-~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p---- 280 (475)
..+.++.||||||+. ++++||||+|||++|+++.+.... ........|..++|||||||||||++|||+|++|
T Consensus 217 ~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~ 294 (311)
T cd07497 217 GSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEG 294 (311)
T ss_pred CCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcC
Confidence 344688999999988 589999999999999998765320 1111124799999999999999999999999886
Q ss_pred --CCCHHHHHHHHHhcc
Q 047896 281 --DWSPAAIKSAIMTTA 295 (475)
Q Consensus 281 --~~s~~~ik~~L~~tA 295 (475)
.++|++||++|++||
T Consensus 295 ~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 295 VGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 589999999999997
No 3
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.94 E-value=1.8e-26 Score=237.94 Aligned_cols=81 Identities=31% Similarity=0.386 Sum_probs=70.5
Q ss_pred CceecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHh----cCCCCC
Q 047896 208 PEVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKS----THPDWS 283 (475)
Q Consensus 208 ~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~----~~p~~s 283 (475)
+.+..||||||+. ++.+||||.|||+.|.++-... ...|..++|||||+|||||++|||++ ++|+|+
T Consensus 327 ~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~-------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~t 397 (412)
T cd04857 327 GNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT-------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYT 397 (412)
T ss_pred CccccccccCCcc--cCCcCceEEeCCCcEEEcccCC-------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCC
Confidence 4578999999998 6899999999999998752211 25799999999999999999999975 578999
Q ss_pred HHHHHHHHHhcccc
Q 047896 284 PAAIKSAIMTTADI 297 (475)
Q Consensus 284 ~~~ik~~L~~tA~~ 297 (475)
|.+||++|++||++
T Consensus 398 p~~Vk~aL~~TA~~ 411 (412)
T cd04857 398 PYSVRRALENTAKK 411 (412)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999985
No 4
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.94 E-value=4.3e-26 Score=227.94 Aligned_cols=174 Identities=44% Similarity=0.629 Sum_probs=135.5
Q ss_pred CCcEEEeccCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCC--CCCCCCeEEEEeeeccceeEEEEEeCCCc
Q 047896 1 GVDVISISYGSPPLPFYDDPIASAAFTAVRNGIFVSCAAGNKGPDPSSS--TNGAPWILTVGASTTDRSIVASAQLGNHA 78 (475)
Q Consensus 1 GvDVIn~SlG~~~~~~~~d~~a~aa~~a~~~GV~vV~AAGN~Gp~~~t~--~~~ap~visVaAs~~d~~~~~~~~~g~g~ 78 (475)
|+||||||||.... ...+++..++.++.++||++|+||||+|...... ++..+++|+||+....
T Consensus 119 ~~~Iin~S~g~~~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~------------- 184 (295)
T cd07474 119 GMDVINLSLGSSVN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVA------------- 184 (295)
T ss_pred CCCEEEeCCCCCCC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeecc-------------
Confidence 68999999998632 3467888899999999999999999999765544 5677899999975300
Q ss_pred eEeEEeeeeccCCCCceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCC
Q 047896 79 TYDVEILFMLVNFTSMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKF 158 (475)
Q Consensus 79 ~~~g~s~~~~~~~~~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~ 158 (475)
. .
T Consensus 185 ----------~---------------------~----------------------------------------------- 186 (295)
T cd07474 185 ----------D---------------------V----------------------------------------------- 186 (295)
T ss_pred ----------C---------------------c-----------------------------------------------
Confidence 0 0
Q ss_pred CccccccccccccEEEEchhhhhhHHHhhhcCCCCceEEEeecccccCCCceecccCC-CCCCCCCCCccCcEEecCcce
Q 047896 159 DAYSAILETHVLPAVQVGYATGESIKAYINSTSSPTVAILLRTGNKKSAPEVASLSAR-GPNKVSPGILKPDIIGPGVSI 237 (475)
Q Consensus 159 ~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~i~~~v~~~~~~~~~a~fSs~-Gp~~~~~~~~KPdi~APG~~I 237 (475)
. .......|+++ |+.. ...+||||+|||++|
T Consensus 187 ---------------------------------------------~-~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i 218 (295)
T cd07474 187 ---------------------------------------------A-EADTVGPSSSRGPPTS--DSAIKPDIVAPGVDI 218 (295)
T ss_pred ---------------------------------------------C-CCCceeccCCCCCCCC--CCCcCCCEECCcCce
Confidence 0 11122233444 4444 568999999999999
Q ss_pred EeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccccCCCCccccCCCCCCCCcc
Q 047896 238 LAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTADIVNLEGKPIINNYNLLPAELF 317 (475)
Q Consensus 238 ~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~~~~~~~~ 317 (475)
++++... ...|..++|||||||+|||++|||+|++|.|++++||++|++||.+....+. ..+++.
T Consensus 219 ~~~~~~~-------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~ 283 (295)
T cd07474 219 MSTAPGS-------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVS 283 (295)
T ss_pred EeeccCC-------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChh
Confidence 9998763 2679999999999999999999999999999999999999999998753321 223567
Q ss_pred ccCccccCcccc
Q 047896 318 AVGAGHVNPSKA 329 (475)
Q Consensus 318 ~~G~G~vn~~~A 329 (475)
.+|+|+||+.+|
T Consensus 284 ~~G~G~l~~~~A 295 (295)
T cd07474 284 RQGAGRVDALRA 295 (295)
T ss_pred ccCcceeccccC
Confidence 999999999886
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.94 E-value=5.4e-26 Score=232.54 Aligned_cols=109 Identities=30% Similarity=0.384 Sum_probs=92.1
Q ss_pred CCCceecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhc----CCC
Q 047896 206 SAPEVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKST----HPD 281 (475)
Q Consensus 206 ~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~----~p~ 281 (475)
..+.++.||+|||.. ...+||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.
T Consensus 230 ~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~---------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~ 298 (346)
T cd07475 230 NGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYSTVND---------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPK 298 (346)
T ss_pred CCCccCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCC---------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 455688999999988 578999999999999999876 78999999999999999999999997 688
Q ss_pred CCHHH----HHHHHHhccccccCCCCccccCCCCCCCCccccCccccCccccCC
Q 047896 282 WSPAA----IKSAIMTTADIVNLEGKPIINNYNLLPAELFAVGAGHVNPSKAND 331 (475)
Q Consensus 282 ~s~~~----ik~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 331 (475)
|++.+ ||.+|++||.+.... ...+..+.+.++|+|+||+.||++
T Consensus 299 l~~~~~~~~ik~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 299 LSGEELVDLVKNLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCHHHHHHHHHHHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 88876 788999999853211 111466788899999999999984
No 6
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.93 E-value=7.3e-26 Score=222.26 Aligned_cols=80 Identities=33% Similarity=0.467 Sum_probs=67.0
Q ss_pred eecccCCCCCCC----CCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCC----C
Q 047896 210 VASLSARGPNKV----SPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHP----D 281 (475)
Q Consensus 210 ~a~fSs~Gp~~~----~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p----~ 281 (475)
++.|||+|++.. ..+.+||||.|||.+|+++... +.|..++|||||||||||++|||+|++| .
T Consensus 166 ~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~---------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~ 236 (255)
T cd07479 166 IARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK---------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDL 236 (255)
T ss_pred cccccCCCCCcccccCCCCCcCccEEecCCCeeccccC---------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCC
Confidence 445566664310 1356899999999999988765 6799999999999999999999999998 6
Q ss_pred CCHHHHHHHHHhccccc
Q 047896 282 WSPAAIKSAIMTTADIV 298 (475)
Q Consensus 282 ~s~~~ik~~L~~tA~~~ 298 (475)
++|.+||++|++||+++
T Consensus 237 ~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 237 INPASMKQALIESATRL 253 (255)
T ss_pred CCHHHHHHHHHhhcccC
Confidence 89999999999999875
No 7
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.93 E-value=1e-25 Score=219.21 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=72.8
Q ss_pred eecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 047896 210 VASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKS 289 (475)
Q Consensus 210 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~ 289 (475)
++.||++|+.. ||.|||.+|+++.+. +.|..++|||||||||||++|||+|++| +++++||+
T Consensus 157 ~~~~s~~g~~~--------di~ApG~~i~~~~~~---------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~ 218 (239)
T cd05561 157 LYREANRGAHV--------DFAAPGVDVWVAAPG---------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARA 218 (239)
T ss_pred ccccCCCCCcc--------eEEccccceecccCC---------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHH
Confidence 45678888765 999999999998765 7899999999999999999999999999 99999999
Q ss_pred HHHhccccccCCCCccccCCCCCCCCccccCcc
Q 047896 290 AIMTTADIVNLEGKPIINNYNLLPAELFAVGAG 322 (475)
Q Consensus 290 ~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G 322 (475)
+|++||..+. .+..+..+|||
T Consensus 219 ~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 219 RLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred HHHHHhhccC------------CCCcCCCcCCC
Confidence 9999998653 34456788887
No 8
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.93 E-value=2e-25 Score=219.63 Aligned_cols=77 Identities=39% Similarity=0.678 Sum_probs=69.7
Q ss_pred ceecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHH
Q 047896 209 EVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIK 288 (475)
Q Consensus 209 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik 288 (475)
.++.||++||.. ++.+||||.|||.+|++.... +.|..++|||||||||||++|||+|++|+|++.|||
T Consensus 185 ~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~ 253 (261)
T cd07493 185 NKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIK 253 (261)
T ss_pred CCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC---------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 356789999987 578999999999999986554 689999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 047896 289 SAIMTTAD 296 (475)
Q Consensus 289 ~~L~~tA~ 296 (475)
++|++||+
T Consensus 254 ~~l~~tA~ 261 (261)
T cd07493 254 EAILKSAS 261 (261)
T ss_pred HHHHHhcC
Confidence 99999984
No 9
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.93 E-value=1.6e-25 Score=238.58 Aligned_cols=88 Identities=20% Similarity=0.310 Sum_probs=74.6
Q ss_pred cCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccccCCCCccc
Q 047896 227 KPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTADIVNLEGKPII 306 (475)
Q Consensus 227 KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~~~~~~ 306 (475)
++||+|||++|+++++. +.|..++|||||||||||++|||++++|+|++.+|+++|++||.++...
T Consensus 531 ~VDIaAPG~dI~St~p~---------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~----- 596 (639)
T PTZ00262 531 YCQLAAPGTNIYSTFPK---------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL----- 596 (639)
T ss_pred cceEEeCCCCeeeccCC---------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC-----
Confidence 35999999999999987 7899999999999999999999999999999999999999999865311
Q ss_pred cCCCCCCCCccccCccccCccccCCCCccc
Q 047896 307 NNYNLLPAELFAVGAGHVNPSKANDPGLIY 336 (475)
Q Consensus 307 ~~~~~~~~~~~~~G~G~vn~~~A~~~glv~ 336 (475)
.....++|+||+++|++..+-+
T Consensus 597 --------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 --------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred --------CCccccCcEEcHHHHHHHHHhc
Confidence 1223344899999999865543
No 10
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.92 E-value=7.2e-25 Score=216.53 Aligned_cols=143 Identities=30% Similarity=0.352 Sum_probs=119.4
Q ss_pred CCcEEEeccCCCCC-CCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCCCCCeEEEEeeeccceeEEEEEeCCCce
Q 047896 1 GVDVISISYGSPPL-PFYDDPIASAAFTAVRNGIFVSCAAGNKGPDPSSSTNGAPWILTVGASTTDRSIVASAQLGNHAT 79 (475)
Q Consensus 1 GvDVIn~SlG~~~~-~~~~d~~a~aa~~a~~~GV~vV~AAGN~Gp~~~t~~~~ap~visVaAs~~d~~~~~~~~~g~g~~ 79 (475)
|+||||||||.... ......+..+..+|.++||+||+||||+|.....+++..|++|+|||..
T Consensus 106 g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~---------------- 169 (267)
T cd07476 106 GAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMD---------------- 169 (267)
T ss_pred CCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeec----------------
Confidence 79999999997532 2234567788889999999999999999987777788889999998631
Q ss_pred EeEEeeeeccCCCCceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCC
Q 047896 80 YDVEILFMLVNFTSMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFD 159 (475)
Q Consensus 80 ~~g~s~~~~~~~~~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~ 159 (475)
T Consensus 170 -------------------------------------------------------------------------------- 169 (267)
T cd07476 170 -------------------------------------------------------------------------------- 169 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccEEEEchhhhhhHHHhhhcCCCCceEEEeecccccCCCceecccCCCCCCCCCCCccCcEEecCcceEe
Q 047896 160 AYSAILETHVLPAVQVGYATGESIKAYINSTSSPTVAILLRTGNKKSAPEVASLSARGPNKVSPGILKPDIIGPGVSILA 239 (475)
Q Consensus 160 ~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~i~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s 239 (475)
..+.+..||+||+.. -||||+|||.+|++
T Consensus 170 ----------------------------------------------~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~ 198 (267)
T cd07476 170 ----------------------------------------------DDGLPLKFSNWGADY-----RKKGILAPGENILG 198 (267)
T ss_pred ----------------------------------------------CCCCeeeecCCCCCC-----CCceEEecCCCcee
Confidence 001234577888654 37899999999999
Q ss_pred ecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCC----CCHHHHHHHHHhcccccc
Q 047896 240 AWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPD----WSPAAIKSAIMTTADIVN 299 (475)
Q Consensus 240 a~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~----~s~~~ik~~L~~tA~~~~ 299 (475)
+.+. +.|..++|||||||||||++|||+|++|. +++++||++|++||.++.
T Consensus 199 ~~~~---------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~ 253 (267)
T cd07476 199 AALG---------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCD 253 (267)
T ss_pred ecCC---------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCC
Confidence 9886 78999999999999999999999999887 899999999999999875
No 11
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.92 E-value=1.1e-24 Score=219.95 Aligned_cols=110 Identities=32% Similarity=0.427 Sum_probs=90.5
Q ss_pred cccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcC-CCCCHHHHHHH
Q 047896 212 SLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTH-PDWSPAAIKSA 290 (475)
Q Consensus 212 ~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~-p~~s~~~ik~~ 290 (475)
.||+|||+. ....||||+|||++++++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++
T Consensus 190 ~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~ 260 (312)
T cd07489 190 YFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDL 260 (312)
T ss_pred CccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 467788877 46789999999999999987632 469999999999999999999999999 99999999999
Q ss_pred HHhccccccCCCCccccCCCCCCCCccccCccccCccccCCCC
Q 047896 291 IMTTADIVNLEGKPIINNYNLLPAELFAVGAGHVNPSKANDPG 333 (475)
Q Consensus 291 L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~g 333 (475)
|++||..+...+.. ......++..++|+|+||+.+|+...
T Consensus 261 l~~ta~~~~~~~~~---~~~~~~~~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 261 LASTAKPLPWSDGT---SALPDLAPVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred HHHhCccccccCCC---ccccCCCCHhhcCcceeeHHHHhcCC
Confidence 99999987533211 00012366789999999999999853
No 12
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.92 E-value=6.4e-24 Score=224.20 Aligned_cols=100 Identities=31% Similarity=0.404 Sum_probs=86.2
Q ss_pred cccccC-CCceecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcC
Q 047896 201 TGNKKS-APEVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTH 279 (475)
Q Consensus 201 v~~~~~-~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~ 279 (475)
|+..+. .+.++.||||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|++
T Consensus 349 Vga~~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~---------~~~~~~sGTS~Aap~vaG~aALl~~~~ 417 (455)
T cd07478 349 VGAYNQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG---------GGYTTRSGTSVAAAIVAGACALLLQWG 417 (455)
T ss_pred EEEEeCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC---------CcEEeeCcHHHHHHHHHHHHHHHHHhc
Confidence 444333 34699999999998 689999999999999999986 789999999999999999999999865
Q ss_pred ------CCCCHHHHHHHHHhccccccCCCCccccCCCCCCCCccccCcc
Q 047896 280 ------PDWSPAAIKSAIMTTADIVNLEGKPIINNYNLLPAELFAVGAG 322 (475)
Q Consensus 280 ------p~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G 322 (475)
|.|++++||++|+.+|++.. +..+++.++|||
T Consensus 418 ~~~~~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 418 IVRGNDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred hhccCCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999999763 245678899998
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.92 E-value=2.6e-24 Score=212.16 Aligned_cols=77 Identities=42% Similarity=0.658 Sum_probs=71.2
Q ss_pred ceecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCC--CCHHH
Q 047896 209 EVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPD--WSPAA 286 (475)
Q Consensus 209 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~--~s~~~ 286 (475)
.++.||++||.. .+.+||||+|||.+|+++++. +.|...+|||||||+|||++|||+|++|+ +++.|
T Consensus 186 ~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~---------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~ 254 (264)
T cd07481 186 VLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG---------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDA 254 (264)
T ss_pred CCccccCCCCCC--CCCcCceEEECCCCeEEecCC---------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence 456789999987 478999999999999999986 78999999999999999999999999999 99999
Q ss_pred HHHHHHhccc
Q 047896 287 IKSAIMTTAD 296 (475)
Q Consensus 287 ik~~L~~tA~ 296 (475)
||++|++||+
T Consensus 255 v~~~L~~tA~ 264 (264)
T cd07481 255 TEAILTETAR 264 (264)
T ss_pred HHHHHHHhcC
Confidence 9999999985
No 14
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.91 E-value=1.3e-24 Score=217.27 Aligned_cols=82 Identities=26% Similarity=0.445 Sum_probs=69.4
Q ss_pred ccCCCCCCCCCCCccCcEEecCcceEeecCCCc---------ccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCC
Q 047896 213 LSARGPNKVSPGILKPDIIGPGVSILAAWPSSQ---------ENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWS 283 (475)
Q Consensus 213 fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~---------~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s 283 (475)
||+|||.. ++.+||||+|||++|.+...... .........|..++|||||||||||++|||++++|+++
T Consensus 201 fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t 278 (291)
T cd04847 201 TTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELS 278 (291)
T ss_pred ccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCC
Confidence 99999988 68999999999999987643210 01112236899999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 047896 284 PAAIKSAIMTTAD 296 (475)
Q Consensus 284 ~~~ik~~L~~tA~ 296 (475)
+++||++|+++|+
T Consensus 279 ~~~ikalL~~sA~ 291 (291)
T cd04847 279 PETIRALLIHSAE 291 (291)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999985
No 15
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.91 E-value=1.6e-23 Score=205.65 Aligned_cols=156 Identities=33% Similarity=0.571 Sum_probs=124.5
Q ss_pred CCcEEEeccCCCCC-CCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC--CCCCCCCCeEEEEeeeccceeEEEEEeCCC
Q 047896 1 GVDVISISYGSPPL-PFYDDPIASAAFTAVRNGIFVSCAAGNKGPDPS--SSTNGAPWILTVGASTTDRSIVASAQLGNH 77 (475)
Q Consensus 1 GvDVIn~SlG~~~~-~~~~d~~a~aa~~a~~~GV~vV~AAGN~Gp~~~--t~~~~ap~visVaAs~~d~~~~~~~~~g~g 77 (475)
|+||||||||.... ....+++..++.++.++||++|+||||+|.... ..++..+++|+|||...+..
T Consensus 106 ~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------- 175 (264)
T cd07487 106 NIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------- 175 (264)
T ss_pred CceEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------
Confidence 68999999998743 345678999999999999999999999998765 45567788888886421000
Q ss_pred ceEeEEeeeeccCCCCceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecC
Q 047896 78 ATYDVEILFMLVNFTSMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDK 157 (475)
Q Consensus 78 ~~~~g~s~~~~~~~~~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~ 157 (475)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccEEEEchhhhhhHHHhhhcCCCCceEEEeecccccCCCceecccCCCCCCCCCCCccCcEEecCcce
Q 047896 158 FDAYSAILETHVLPAVQVGYATGESIKAYINSTSSPTVAILLRTGNKKSAPEVASLSARGPNKVSPGILKPDIIGPGVSI 237 (475)
Q Consensus 158 ~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~i~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I 237 (475)
....++.||++||.. .+.+||||+|||.+|
T Consensus 176 ------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i 205 (264)
T cd07487 176 ------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENI 205 (264)
T ss_pred ------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccce
Confidence 001356789999987 578999999999999
Q ss_pred EeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccc
Q 047896 238 LAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTAD 296 (475)
Q Consensus 238 ~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~ 296 (475)
++..+..........+.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 206 VSCRSPGGNPGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred EeccccccccCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99754322111222368999999999999999999999999999999999999999985
No 16
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.90 E-value=2.8e-23 Score=209.24 Aligned_cols=134 Identities=58% Similarity=0.887 Sum_probs=111.9
Q ss_pred CCcEEEeccCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCCCCCeEEEEeeeccceeEEEEEeCCCceE
Q 047896 1 GVDVISISYGSPPLPFYDDPIASAAFTAVRNGIFVSCAAGNKGPDPSSSTNGAPWILTVGASTTDRSIVASAQLGNHATY 80 (475)
Q Consensus 1 GvDVIn~SlG~~~~~~~~d~~a~aa~~a~~~GV~vV~AAGN~Gp~~~t~~~~ap~visVaAs~~d~~~~~~~~~g~g~~~ 80 (475)
|+||||||||........+.+..+.+++.++||+||+||||+|+...+.++..||+++|||.+
T Consensus 173 g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----------------- 235 (307)
T cd04852 173 GVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----------------- 235 (307)
T ss_pred CCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----------------
Confidence 689999999987544556788889999999999999999999988778888889999998631
Q ss_pred eEEeeeeccCCCCceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCc
Q 047896 81 DVEILFMLVNFTSMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDA 160 (475)
Q Consensus 81 ~g~s~~~~~~~~~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~ 160 (475)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccEEEEchhhhhhHHHhhhcCCCCceEEEeecccccCCCceecccCCCCCCCCCCCccCcEEecCcceEee
Q 047896 161 YSAILETHVLPAVQVGYATGESIKAYINSTSSPTVAILLRTGNKKSAPEVASLSARGPNKVSPGILKPDIIGPGVSILAA 240 (475)
Q Consensus 161 ~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~i~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa 240 (475)
.||||+|||.+|+++
T Consensus 236 -----------------------------------------------------------------~~~di~apG~~i~~~ 250 (307)
T cd04852 236 -----------------------------------------------------------------LKPDIAAPGVDILAA 250 (307)
T ss_pred -----------------------------------------------------------------CccceeeccCceeec
Confidence 245888888888888
Q ss_pred cCCCc-ccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccc
Q 047896 241 WPSSQ-ENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTAD 296 (475)
Q Consensus 241 ~~~~~-~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~ 296 (475)
++... .........|..++|||||||+|||++|||+|+||+|+|.|||++|++||+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 251 WTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 76321 111222368999999999999999999999999999999999999999984
No 17
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.89 E-value=5.4e-23 Score=205.75 Aligned_cols=72 Identities=33% Similarity=0.538 Sum_probs=66.4
Q ss_pred ceecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHH
Q 047896 209 EVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIK 288 (475)
Q Consensus 209 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik 288 (475)
.++.||++|+. ++||.|||.+|+++.+. +.|..++|||||||||||++|||+|++|++++.|||
T Consensus 220 ~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~ 283 (291)
T cd07483 220 LVANFSNYGKK-------NVDVFAPGERIYSTTPD---------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVK 283 (291)
T ss_pred cccccCCCCCC-------ceEEEeCCCCeEeccCc---------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 47889999964 46999999999999876 789999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 047896 289 SAIMTTAD 296 (475)
Q Consensus 289 ~~L~~tA~ 296 (475)
++|++||.
T Consensus 284 ~~L~~ta~ 291 (291)
T cd07483 284 QIILESGV 291 (291)
T ss_pred HHHHHhCC
Confidence 99999984
No 18
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.89 E-value=2.8e-22 Score=201.12 Aligned_cols=69 Identities=25% Similarity=0.387 Sum_probs=56.0
Q ss_pred EEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhcccccc
Q 047896 230 IIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTADIVN 299 (475)
Q Consensus 230 i~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~ 299 (475)
++|||..|.+++.... ........|..++|||||||||||++|||+|+||.|++++||++|+.||.++.
T Consensus 218 ~~APG~~i~~~~~~~~-~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 218 PVPPGSQLDRSCAAFP-DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT 286 (298)
T ss_pred ccCCCcceeccccCCC-CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 3789999976553210 01112368999999999999999999999999999999999999999999764
No 19
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.88 E-value=2.4e-23 Score=206.18 Aligned_cols=106 Identities=37% Similarity=0.470 Sum_probs=84.7
Q ss_pred eecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 047896 210 VASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKS 289 (475)
Q Consensus 210 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~ 289 (475)
++.||++|+... ++.+||||+|||.+|+++++... ...|...+|||||||+|||++|||+|++|+|++.+||.
T Consensus 177 ~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~ 249 (282)
T PF00082_consen 177 PASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSD------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKA 249 (282)
T ss_dssp BSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTE------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred cccccccccccc-ccccccccccccccccccccccc------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 356677754332 46899999999999998887521 13578899999999999999999999999999999999
Q ss_pred HHHhccccccCCCCccccCCCCCCCCccccCccccCccccCC
Q 047896 290 AIMTTADIVNLEGKPIINNYNLLPAELFAVGAGHVNPSKAND 331 (475)
Q Consensus 290 ~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 331 (475)
+|++||...... ........+|+|+||+.+|++
T Consensus 250 ~l~~ta~~~~~~---------~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 250 LLINTADDLGST---------NGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHSBESSET---------TSSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHhCcccCcC---------CCCCCCCCccCChhCHHHHhC
Confidence 999999987511 123456678999999999864
No 20
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.88 E-value=2.7e-22 Score=196.19 Aligned_cols=68 Identities=41% Similarity=0.694 Sum_probs=59.3
Q ss_pred CCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccc
Q 047896 224 GILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTAD 296 (475)
Q Consensus 224 ~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~ 296 (475)
...|||+.|||.+|+++.... ...+.|..++|||||||+|||++|||+|++|++++.+||++|++||.
T Consensus 187 ~~~~~d~~apG~~i~~~~~~~-----~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 187 EYTKPDVAAPGVDVYSARQGA-----NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CCcCceEEeccCCeEccccCC-----CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 467999999999999865221 11268999999999999999999999999999999999999999984
No 21
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.88 E-value=3.5e-22 Score=194.93 Aligned_cols=61 Identities=28% Similarity=0.360 Sum_probs=50.9
Q ss_pred CCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCH------HHHHHHHHhc
Q 047896 223 PGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSP------AAIKSAIMTT 294 (475)
Q Consensus 223 ~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~------~~ik~~L~~t 294 (475)
.+..||||+|||++|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.+
T Consensus 180 ~~~~~~di~APG~~i~s--~~---------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 180 YGRRKVLIVAPGSNYNL--PD---------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred CCCceeEEEEeeeeEEC--CC---------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 45689999999999998 33 67899999999999999999999999887654 4566666654
No 22
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.1e-22 Score=212.40 Aligned_cols=217 Identities=21% Similarity=0.237 Sum_probs=131.7
Q ss_pred eecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHh----cCCCCCHH
Q 047896 210 VASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKS----THPDWSPA 285 (475)
Q Consensus 210 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~----~~p~~s~~ 285 (475)
+-.+|||||+. |+.+---|.|||+-|-+- |.. ....-+.|.|||||+|+++|..|||++ .+-.|+|.
T Consensus 454 ~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpy 524 (1304)
T KOG1114|consen 454 PYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQY------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPY 524 (1304)
T ss_pred ccccccCCCCc--CCCcceEEecCCccccCC-chh------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHH
Confidence 66789999998 678888999999998653 321 124567899999999999999999865 56689999
Q ss_pred HHHHHHHhccccccCCCCccccCCCCCCCCccccCccccCccccCCCCccccCCCCCcccccccCCC------Cccceee
Q 047896 286 AIKSAIMTTADIVNLEGKPIINNYNLLPAELFAVGAGHVNPSKANDPGLIYDIQPDDYVPYLCGLNY------TDQQLQT 359 (475)
Q Consensus 286 ~ik~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~~c~~~~------~~~~~~~ 359 (475)
.||.+|++||..+.+ ..+|.||-|+|++.+|.+-=.-.+. .|--.++| |...=.+
T Consensus 525 sVrrAlenTa~~l~~-------------id~faqG~GmlqVdkAyEyL~q~~~------~f~~~l~f~~v~VgN~~srGI 585 (1304)
T KOG1114|consen 525 SVRRALENTATKLGD-------------IDSFAQGQGMLQVDKAYEYLAQSDF------SFPNALGFINVNVGNSCSRGI 585 (1304)
T ss_pred HHHHHHHhcccccCc-------------cchhccCcceeehhHHHHHHHHhhh------cCCccceeEEEeeccccccce
Confidence 999999999998742 2479999999999999761000001 11112222 0000112
Q ss_pred EeccccccccccCCCCCCCCCccEEeecCCCCeEEEEEEEecC---CCCeeEEEEEeCCCCeEEEEEcCeEEEecCCcEE
Q 047896 360 IVDHDVQCSKVASIAEAELNYPSFSIKLGSSPQTYNRTIANVG---EANSSYTHQIVAPEGVEISVQPNEISFTERNQKV 436 (475)
Q Consensus 360 ~~~~~~~c~~~~~~~~~~lN~ps~~~~~~~~~~t~~rtvtN~g---~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~ 436 (475)
+.+++..|.+ +.+.++ .+. =.+.|-- .....|.+.........+.--|+.|.+ .++.|
T Consensus 586 yLRep~~~~~-----p~e~~i---~Ve---------PiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R 646 (1304)
T KOG1114|consen 586 YLREPTQVCS-----PSEHTI---GVE---------PIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGR 646 (1304)
T ss_pred EecCCcccCC-----ccccce---ecc---------ccccCccccccccccceeeEeeecCCcceeCchhhee--ccCCc
Confidence 2233322221 011110 000 0011100 011123222221111122223666555 37789
Q ss_pred EEEEEEEecCCCCCceEEEEEEEEe-----CCceEEEEEEEEe
Q 047896 437 TYSITFTRSQKTSASYAQGYLSWVS-----TQHTVRSPIAVSF 474 (475)
Q Consensus 437 ~~~vt~~~~~~~~~~~~~G~i~~~~-----~~~~vr~P~~v~~ 474 (475)
.+.|+++++.... +..++.|.--| .+..+|||+.|.-
T Consensus 647 ~i~VrVDpt~l~~-G~hy~eV~gyD~~~p~~gplFrIPVTVi~ 688 (1304)
T KOG1114|consen 647 GINVRVDPTGLAP-GVHYTEVLGYDTANPSRGPLFRIPVTVIK 688 (1304)
T ss_pred eeEEEECCcCCCC-CcceEEEEEeecCCcccCceEEeeeEEEc
Confidence 9999999998876 56666666544 5799999998753
No 23
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.88 E-value=4.2e-22 Score=193.59 Aligned_cols=144 Identities=31% Similarity=0.411 Sum_probs=112.8
Q ss_pred CCcEEEeccCCCCCC-CCCCHHHHHHHHHHh-CCcEEEEcCCCCCCCCCCCCCCCCCeEEEEeeeccceeEEEEEeCCCc
Q 047896 1 GVDVISISYGSPPLP-FYDDPIASAAFTAVR-NGIFVSCAAGNKGPDPSSSTNGAPWILTVGASTTDRSIVASAQLGNHA 78 (475)
Q Consensus 1 GvDVIn~SlG~~~~~-~~~d~~a~aa~~a~~-~GV~vV~AAGN~Gp~~~t~~~~ap~visVaAs~~d~~~~~~~~~g~g~ 78 (475)
|+||||||||..... .....+..++.++.+ +|+++|+||||+|......++..+++|+|||.+
T Consensus 97 ~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~--------------- 161 (242)
T cd07498 97 GADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATD--------------- 161 (242)
T ss_pred CCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeC---------------
Confidence 689999999986432 224566677778888 999999999999987666677889999998642
Q ss_pred eEeEEeeeeccCCCCceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCC
Q 047896 79 TYDVEILFMLVNFTSMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKF 158 (475)
Q Consensus 79 ~~~g~s~~~~~~~~~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~ 158 (475)
T Consensus 162 -------------------------------------------------------------------------------- 161 (242)
T cd07498 162 -------------------------------------------------------------------------------- 161 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccEEEEchhhhhhHHHhhhcCCCCceEEEeecccccCCCceecccCCCCCCCCCCCccCcEEecCcceE
Q 047896 159 DAYSAILETHVLPAVQVGYATGESIKAYINSTSSPTVAILLRTGNKKSAPEVASLSARGPNKVSPGILKPDIIGPGVSIL 238 (475)
Q Consensus 159 ~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~i~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~ 238 (475)
..+..+.||+|||.. |+.|||.+++
T Consensus 162 -----------------------------------------------~~~~~~~~s~~g~~~--------~~~apG~~~~ 186 (242)
T cd07498 162 -----------------------------------------------SNDARASYSNYGNYV--------DLVAPGVGIW 186 (242)
T ss_pred -----------------------------------------------CCCCccCcCCCCCCe--------EEEeCcCCcc
Confidence 011245678889866 9999999998
Q ss_pred eecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Q 047896 239 AAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTT 294 (475)
Q Consensus 239 sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~t 294 (475)
..............+.|..++|||||||+|||++|||+|++|++++.+||++|+.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 187 TTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cCCccccccccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 87443211111223678999999999999999999999999999999999999875
No 24
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.87 E-value=5.7e-22 Score=196.47 Aligned_cols=141 Identities=31% Similarity=0.451 Sum_probs=113.2
Q ss_pred CCcEEEeccCCCCCCCCCCHHHHHHHHHHhC-------CcEEEEcCCCCCCCCCCCCCCCCCeEEEEeeeccceeEEEEE
Q 047896 1 GVDVISISYGSPPLPFYDDPIASAAFTAVRN-------GIFVSCAAGNKGPDPSSSTNGAPWILTVGASTTDRSIVASAQ 73 (475)
Q Consensus 1 GvDVIn~SlG~~~~~~~~d~~a~aa~~a~~~-------GV~vV~AAGN~Gp~~~t~~~~ap~visVaAs~~d~~~~~~~~ 73 (475)
|+||||||||........+.+..+...+.++ |+++|+||||+|......++..+++|+||+.+
T Consensus 124 g~~Vin~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~---------- 193 (273)
T cd07485 124 GAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALD---------- 193 (273)
T ss_pred CCcEEEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEecc----------
Confidence 7899999999874333455677788888888 99999999999987655577778888887631
Q ss_pred eCCCceEeEEeeeeccCCCCceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEE
Q 047896 74 LGNHATYDVEILFMLVNFTSMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMIL 153 (475)
Q Consensus 74 ~g~g~~~~g~s~~~~~~~~~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi 153 (475)
T Consensus 194 -------------------------------------------------------------------------------- 193 (273)
T cd07485 194 -------------------------------------------------------------------------------- 193 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCccccccccccccEEEEchhhhhhHHHhhhcCCCCceEEEeecccccCCCceecccCCCCCCCCCCCccCcEEec
Q 047896 154 ISDKFDAYSAILETHVLPAVQVGYATGESIKAYINSTSSPTVAILLRTGNKKSAPEVASLSARGPNKVSPGILKPDIIGP 233 (475)
Q Consensus 154 ~~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~i~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~AP 233 (475)
..+.++.||++|+.. ||.||
T Consensus 194 ----------------------------------------------------~~~~~~~~S~~g~~~--------~i~ap 213 (273)
T cd07485 194 ----------------------------------------------------TNDNKASFSNYGRWV--------DIAAP 213 (273)
T ss_pred ----------------------------------------------------CCCCcCccccCCCce--------EEEeC
Confidence 111345788999765 99999
Q ss_pred Cc-ceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCC-CCHHHHHHHHHhc
Q 047896 234 GV-SILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPD-WSPAAIKSAIMTT 294 (475)
Q Consensus 234 G~-~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~-~s~~~ik~~L~~t 294 (475)
|. .|+++++.... .....|..++|||||||+|||++|||+|++|. +++.|||++|++|
T Consensus 214 G~~~i~~~~~~~~~---~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 214 GVGTILSTVPKLDG---DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCccccccccccC---CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99 99988775310 11257999999999999999999999999999 9999999999986
No 25
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.87 E-value=7.8e-22 Score=193.37 Aligned_cols=73 Identities=44% Similarity=0.666 Sum_probs=65.8
Q ss_pred eecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 047896 210 VASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKS 289 (475)
Q Consensus 210 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~ 289 (475)
.+.||++||.. |+.|||.+|+++..... ..|..++|||||||+|||++|||+|++|++++++||+
T Consensus 183 ~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~ 247 (255)
T cd04077 183 RASFSNYGSCV--------DIFAPGVDILSAWIGSD-------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKA 247 (255)
T ss_pred ccCcccCCCCC--------cEEeCCCCeEecccCCC-------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 46688999876 99999999999887421 6899999999999999999999999999999999999
Q ss_pred HHHhcccc
Q 047896 290 AIMTTADI 297 (475)
Q Consensus 290 ~L~~tA~~ 297 (475)
+|++||++
T Consensus 248 ~L~~tA~~ 255 (255)
T cd04077 248 RLLNLATK 255 (255)
T ss_pred HHHhhccC
Confidence 99999973
No 26
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.87 E-value=9.2e-22 Score=196.15 Aligned_cols=78 Identities=35% Similarity=0.540 Sum_probs=64.0
Q ss_pred ceecccCCCCCCCCCCCccCcEEecCcceEeecCCCcc------cccccCcceEEeCCCccchHHHHHHHHHHHhcCCCC
Q 047896 209 EVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQE------NITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDW 282 (475)
Q Consensus 209 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~------~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~ 282 (475)
.++.||++|+.. ||.|||++|.++...... ........|..++|||||||+|||++|||+|++|+|
T Consensus 202 ~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~l 273 (285)
T cd07496 202 QRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSL 273 (285)
T ss_pred CcccccCCCCCC--------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCC
Confidence 356789999876 999999999988754210 111123578999999999999999999999999999
Q ss_pred CHHHHHHHHHhc
Q 047896 283 SPAAIKSAIMTT 294 (475)
Q Consensus 283 s~~~ik~~L~~t 294 (475)
++++||++|++|
T Consensus 274 t~~~v~~~L~~t 285 (285)
T cd07496 274 TPAQIESLLQST 285 (285)
T ss_pred CHHHHHHHHHhC
Confidence 999999999876
No 27
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.87 E-value=1.7e-21 Score=194.54 Aligned_cols=88 Identities=35% Similarity=0.572 Sum_probs=71.7
Q ss_pred CCceecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcC-----C-
Q 047896 207 APEVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTH-----P- 280 (475)
Q Consensus 207 ~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~-----p- 280 (475)
...++.||++||.. .+++||||+|||++|+++..............|...+|||||||||||++|||+|++ |
T Consensus 198 ~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~ 275 (293)
T cd04842 198 SDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPT 275 (293)
T ss_pred CCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 44688999999987 578999999999999999744210111123679999999999999999999999985 4
Q ss_pred --CCCHHHHHHHHHhccc
Q 047896 281 --DWSPAAIKSAIMTTAD 296 (475)
Q Consensus 281 --~~s~~~ik~~L~~tA~ 296 (475)
.+++.++|++|++||+
T Consensus 276 ~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 276 KFNPSAALLKALLINSAR 293 (293)
T ss_pred CcCcCHHHHHHHHHhcCC
Confidence 6777899999999985
No 28
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.86 E-value=2.2e-21 Score=190.61 Aligned_cols=135 Identities=34% Similarity=0.478 Sum_probs=114.4
Q ss_pred CCcEEEeccCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCCCCCeEEEEeeeccceeEEEEEeCCCceE
Q 047896 1 GVDVISISYGSPPLPFYDDPIASAAFTAVRNGIFVSCAAGNKGPDPSSSTNGAPWILTVGASTTDRSIVASAQLGNHATY 80 (475)
Q Consensus 1 GvDVIn~SlG~~~~~~~~d~~a~aa~~a~~~GV~vV~AAGN~Gp~~~t~~~~ap~visVaAs~~d~~~~~~~~~g~g~~~ 80 (475)
|+||||||||... ....+..++..+.++|+++|+||||+|.....+++..+++|+||+.+
T Consensus 125 ~~~iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~----------------- 184 (260)
T cd07484 125 GAKVINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATD----------------- 184 (260)
T ss_pred CCeEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeC-----------------
Confidence 6899999999863 34567777788889999999999999988778888888999998632
Q ss_pred eEEeeeeccCCCCceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCc
Q 047896 81 DVEILFMLVNFTSMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDA 160 (475)
Q Consensus 81 ~g~s~~~~~~~~~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~ 160 (475)
T Consensus 185 -------------------------------------------------------------------------------- 184 (260)
T cd07484 185 -------------------------------------------------------------------------------- 184 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccEEEEchhhhhhHHHhhhcCCCCceEEEeecccccCCCceecccCCCCCCCCCCCccCcEEecCcceEee
Q 047896 161 YSAILETHVLPAVQVGYATGESIKAYINSTSSPTVAILLRTGNKKSAPEVASLSARGPNKVSPGILKPDIIGPGVSILAA 240 (475)
Q Consensus 161 ~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~i~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa 240 (475)
..+..+.||++|+.. |+.|||++|+++
T Consensus 185 ---------------------------------------------~~~~~~~~s~~g~~~--------~~~apG~~i~~~ 211 (260)
T cd07484 185 ---------------------------------------------QDDKRASFSNYGKWV--------DVSAPGGGILST 211 (260)
T ss_pred ---------------------------------------------CCCCcCCcCCCCCCc--------eEEeCCCCcEee
Confidence 011234567788654 999999999998
Q ss_pred cCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccc
Q 047896 241 WPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTADIV 298 (475)
Q Consensus 241 ~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~~~ 298 (475)
.+. +.|..++|||||||+|||++|||++++| +++.+||++|++||+++
T Consensus 212 ~~~---------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 212 TPD---------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred cCC---------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 876 6899999999999999999999999999 99999999999999864
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.86 E-value=2.9e-21 Score=185.81 Aligned_cols=67 Identities=39% Similarity=0.739 Sum_probs=61.0
Q ss_pred ecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 047896 211 ASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSA 290 (475)
Q Consensus 211 a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~ 290 (475)
..||++|+.. |+.|||++|+++++. +.|...+|||||||+|||++|||+|++|++++.+||++
T Consensus 163 ~~~s~~g~~~--------~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~ 225 (229)
T cd07477 163 ASFSSTGPEV--------ELAAPGVDILSTYPN---------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQA 225 (229)
T ss_pred CCccCCCCCc--------eEEeCCCCeEEecCC---------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3567788754 999999999999876 68999999999999999999999999999999999999
Q ss_pred HHhc
Q 047896 291 IMTT 294 (475)
Q Consensus 291 L~~t 294 (475)
|++|
T Consensus 226 l~~t 229 (229)
T cd07477 226 LNKT 229 (229)
T ss_pred HHhC
Confidence 9876
No 30
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.85 E-value=9e-21 Score=188.24 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=63.9
Q ss_pred eecccCCCCCCCCCCCccCcEEecCcceEeecCCCcc-cccccCcceEEeCCCccchHHHHHHHHHHHh----c-CCCCC
Q 047896 210 VASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQE-NITKTKATFEIADGTSMSCPHLSGIAALLKS----T-HPDWS 283 (475)
Q Consensus 210 ~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~-~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~----~-~p~~s 283 (475)
.+.||++|+.. ||.|||++|+++.+.... ......+.|..++|||||||||||++|||++ + +|+|+
T Consensus 193 ~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt 264 (277)
T cd04843 193 RLAFSNYGSRV--------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLT 264 (277)
T ss_pred cccccCCCCcc--------ceEcCCCCeEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCC
Confidence 78999999876 999999999999876321 0111113357899999999999999999974 4 49999
Q ss_pred HHHHHHHHHhccc
Q 047896 284 PAAIKSAIMTTAD 296 (475)
Q Consensus 284 ~~~ik~~L~~tA~ 296 (475)
++|||++|+.|++
T Consensus 265 ~~~v~~~L~~t~~ 277 (277)
T cd04843 265 PIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999874
No 31
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.85 E-value=1.3e-20 Score=184.96 Aligned_cols=72 Identities=43% Similarity=0.683 Sum_probs=64.5
Q ss_pred ceecccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHH
Q 047896 209 EVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIK 288 (475)
Q Consensus 209 ~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik 288 (475)
.+..||++||. +||+.|||.++++..+. ..|..++|||||||+|||++|||+|++|.+++.+||
T Consensus 188 ~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~ 251 (259)
T cd07473 188 ALASFSNYGKK-------TVDLAAPGVDILSTSPG---------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIK 251 (259)
T ss_pred CcCcccCCCCC-------CcEEEeccCCeEeccCC---------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34558888874 46999999999997765 789999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 047896 289 SAIMTTAD 296 (475)
Q Consensus 289 ~~L~~tA~ 296 (475)
++|++||+
T Consensus 252 ~~L~~tA~ 259 (259)
T cd07473 252 DAILSSAD 259 (259)
T ss_pred HHHHHhCC
Confidence 99999984
No 32
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.84 E-value=2.6e-20 Score=178.84 Aligned_cols=60 Identities=30% Similarity=0.506 Sum_probs=56.8
Q ss_pred CcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccc
Q 047896 228 PDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTAD 296 (475)
Q Consensus 228 Pdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~ 296 (475)
+++.|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|+++|||++|+.||+
T Consensus 163 ~~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 163 VEFSADGVDIIAPAPH---------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ceEEeCCCCeEeecCC---------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 4999999999999876 68999999999999999999999999999999999999999985
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.83 E-value=3.1e-20 Score=185.32 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=63.1
Q ss_pred CCCceecccCCCCCCCCCCCccCcEEecCcceEeecCCCc---c----------cccccCcceEEeCCCccchHHHHHHH
Q 047896 206 SAPEVASLSARGPNKVSPGILKPDIIGPGVSILAAWPSSQ---E----------NITKTKATFEIADGTSMSCPHLSGIA 272 (475)
Q Consensus 206 ~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~---~----------~~~~~~~~y~~~sGTSmA~P~vAG~a 272 (475)
..+.++.||++|+.. +|++|||+++........ . ......+.|..++|||||||||||++
T Consensus 199 ~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~a 271 (294)
T cd07482 199 NNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGAL 271 (294)
T ss_pred CCCCcCccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHH
Confidence 556677899988643 489999998852211100 0 01123468999999999999999999
Q ss_pred HHHHhcCCCCCH-HHHHHHHHhc
Q 047896 273 ALLKSTHPDWSP-AAIKSAIMTT 294 (475)
Q Consensus 273 ALl~~~~p~~s~-~~ik~~L~~t 294 (475)
|||+|++|.+++ .|||++|++|
T Consensus 272 All~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 272 ALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred HHHHHHCCCCCcHHHHHHHHhhC
Confidence 999999999999 9999999986
No 34
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.82 E-value=6.9e-20 Score=178.99 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=48.1
Q ss_pred CCcEEEeccCCCCCCC---CCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-CC--CCCCCCeEEEEee
Q 047896 1 GVDVISISYGSPPLPF---YDDPIASAAFTAVRNGIFVSCAAGNKGPDPS-SS--TNGAPWILTVGAS 62 (475)
Q Consensus 1 GvDVIn~SlG~~~~~~---~~d~~a~aa~~a~~~GV~vV~AAGN~Gp~~~-t~--~~~ap~visVaAs 62 (475)
||||||||||.....+ ....+..++.+|.++||+||+||||+|.... ++ ++..|++|+|||.
T Consensus 102 gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 102 KVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred CCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 7999999999863211 2467888889999999999999999997653 32 3556888888864
No 35
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.82 E-value=1.1e-19 Score=178.12 Aligned_cols=72 Identities=29% Similarity=0.416 Sum_probs=60.8
Q ss_pred ccCCCCCCCCCCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 047896 213 LSARGPNKVSPGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIM 292 (475)
Q Consensus 213 fSs~Gp~~~~~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~ 292 (475)
||++|+.. -..++.|||.+|+++.+.. ...|..++|||||||+|||++|||+|++|.+++++||++|+
T Consensus 196 ~s~~~~~~-----~~~~~~apG~~i~~~~~~~-------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~ 263 (267)
T cd04848 196 YSNRCGVA-----ANWCLAAPGENIYSTDPDG-------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLL 263 (267)
T ss_pred ccccchhh-----hhheeecCcCceeecccCC-------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 36666533 2347899999999988731 16889999999999999999999999999999999999999
Q ss_pred hccc
Q 047896 293 TTAD 296 (475)
Q Consensus 293 ~tA~ 296 (475)
+||+
T Consensus 264 ~tA~ 267 (267)
T cd04848 264 TTAT 267 (267)
T ss_pred hhcC
Confidence 9985
No 36
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.81 E-value=1.7e-19 Score=180.56 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=56.8
Q ss_pred eecccCCCCCCCCCCCccCcEEecCcc-------eEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCC
Q 047896 210 VASLSARGPNKVSPGILKPDIIGPGVS-------ILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDW 282 (475)
Q Consensus 210 ~a~fSs~Gp~~~~~~~~KPdi~APG~~-------I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~ 282 (475)
++.||++|+.. ++.|||.. |+++.... ....|..++|||||||||||++|||+|+||+|
T Consensus 218 ~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~l 283 (297)
T cd04059 218 RASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGG------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNL 283 (297)
T ss_pred CcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCC------CCCcccccCCcchhhhhhHhHHHHhhccCCCC
Confidence 34556666554 56666655 55554431 01467889999999999999999999999999
Q ss_pred CHHHHHHHHHhccc
Q 047896 283 SPAAIKSAIMTTAD 296 (475)
Q Consensus 283 s~~~ik~~L~~tA~ 296 (475)
++.|||++|++||+
T Consensus 284 t~~~v~~~L~~TA~ 297 (297)
T cd04059 284 TWRDVQHILALTAR 297 (297)
T ss_pred CHHHHHHHHHHhcC
Confidence 99999999999985
No 37
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.81 E-value=2.3e-19 Score=180.05 Aligned_cols=86 Identities=27% Similarity=0.349 Sum_probs=68.4
Q ss_pred ccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccccCCCCcc
Q 047896 226 LKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTADIVNLEGKPI 305 (475)
Q Consensus 226 ~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~~~~~ 305 (475)
.||||.|||.+|+++++. +.|..++|||||||+|||++|||+|++|.++..+++.+|+..........
T Consensus 211 ~~~dv~ApG~~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~--- 278 (297)
T cd07480 211 GEVDIAAPGVDIVSAAPG---------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ--- 278 (297)
T ss_pred CceEEEeCCCCeEeecCC---------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC---
Confidence 478999999999999876 78999999999999999999999999999998888877774322210000
Q ss_pred ccCCCCCCCCccccCccccCcc
Q 047896 306 INNYNLLPAELFAVGAGHVNPS 327 (475)
Q Consensus 306 ~~~~~~~~~~~~~~G~G~vn~~ 327 (475)
......+..+|+|++++.
T Consensus 279 ----~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 279 ----FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred ----CCCCCChhhcCCceeecC
Confidence 023456789999999874
No 38
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.2e-18 Score=175.15 Aligned_cols=133 Identities=35% Similarity=0.497 Sum_probs=109.3
Q ss_pred cEEEeccCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC-CCCCCCCCCeEEEEeeeccceeEEEEEeCCCceEe
Q 047896 3 DVISISYGSPPLPFYDDPIASAAFTAVRNGIFVSCAAGNKGPDP-SSSTNGAPWILTVGASTTDRSIVASAQLGNHATYD 81 (475)
Q Consensus 3 DVIn~SlG~~~~~~~~d~~a~aa~~a~~~GV~vV~AAGN~Gp~~-~t~~~~ap~visVaAs~~d~~~~~~~~~g~g~~~~ 81 (475)
-|.|||||+.. .-.+..|+.+|.+.||++++||||+-.+. ++.|+.+..+|+|||++
T Consensus 319 sv~NlSlGg~~----S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst------------------ 376 (501)
T KOG1153|consen 319 SVANLSLGGFR----SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGAST------------------ 376 (501)
T ss_pred eEEEEecCCcc----cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccc------------------
Confidence 48999999863 34688899999999999999999987554 45567788888888753
Q ss_pred EEeeeeccCCCCceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCcc
Q 047896 82 VEILFMLVNFTSMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAY 161 (475)
Q Consensus 82 g~s~~~~~~~~~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~ 161 (475)
T Consensus 377 -------------------------------------------------------------------------------- 376 (501)
T KOG1153|consen 377 -------------------------------------------------------------------------------- 376 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEEchhhhhhHHHhhhcCCCCceEEEeecccccCCCceecccCCCCCCCCCCCccCcEEecCcceEeec
Q 047896 162 SAILETHVLPAVQVGYATGESIKAYINSTSSPTVAILLRTGNKKSAPEVASLSARGPNKVSPGILKPDIIGPGVSILAAW 241 (475)
Q Consensus 162 ~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~i~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~sa~ 241 (475)
-.+.++.|||||+.. ||-|||++|+|+|
T Consensus 377 --------------------------------------------~~D~iA~FSN~G~CV--------diFAPGv~IlSs~ 404 (501)
T KOG1153|consen 377 --------------------------------------------KNDTIAFFSNWGKCV--------DIFAPGVNILSSW 404 (501)
T ss_pred --------------------------------------------cccchhhhcCcccee--------eeecCchhhhhhh
Confidence 223578999999999 9999999999999
Q ss_pred CCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCC---------CCHHHHHHHHHhccc
Q 047896 242 PSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPD---------WSPAAIKSAIMTTAD 296 (475)
Q Consensus 242 ~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~---------~s~~~ik~~L~~tA~ 296 (475)
.+.. ..-.++||||||+|||||++|..++.+|. .++.++|..+..-..
T Consensus 405 iGs~-------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 405 IGSN-------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hcCc-------cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 8743 56679999999999999999999999883 277788877765544
No 39
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1e-16 Score=165.81 Aligned_cols=103 Identities=28% Similarity=0.412 Sum_probs=84.1
Q ss_pred CCceecccCCCCCC-CC---CCCccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHh----c
Q 047896 207 APEVASLSARGPNK-VS---PGILKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKS----T 278 (475)
Q Consensus 207 ~~~~a~fSs~Gp~~-~~---~~~~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~----~ 278 (475)
.+.++.|||||=+. +. -+++||||++-|.+|.+.... .+-..+||||.|+|.|||+++||.+ +
T Consensus 355 dD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~---------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk 425 (1033)
T KOG4266|consen 355 DDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS---------TGCRSLSGTSVASPVVAGAVCLLVSVEAQK 425 (1033)
T ss_pred cchhhhhccCCcceeecCCcccccCCceEeeccccccCccc---------ccchhccCCcccchhhhceeeeEeeeheeh
Confidence 44678888888642 22 378999999999999877655 6788999999999999999999977 2
Q ss_pred CCCCCHHHHHHHHHhccccccCCCCccccCCCCCCCCccccCccccCccccCC
Q 047896 279 HPDWSPAAIKSAIMTTADIVNLEGKPIINNYNLLPAELFAVGAGHVNPSKAND 331 (475)
Q Consensus 279 ~p~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 331 (475)
.--+.|+.+|++|+..|..+.. ..-+.||+|.+|..++.+
T Consensus 426 ~dl~NPASmKQaLiegA~kLpg-------------~NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 426 KDLLNPASMKQALIEGAAKLPG-------------PNMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred hhccCHHHHHHHHHhHHhhCCC-------------CchhhccCcchhHHHHHH
Confidence 2346899999999999998742 236899999999988876
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.70 E-value=1.7e-16 Score=151.72 Aligned_cols=62 Identities=39% Similarity=0.622 Sum_probs=53.8
Q ss_pred ccCcEEecCcceEeecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Q 047896 226 LKPDIIGPGVSILAAWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTT 294 (475)
Q Consensus 226 ~KPdi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~t 294 (475)
.|||+.|||.++...... ....|..++|||||||+|||++|||+|++|++++.++|++|++|
T Consensus 180 ~~~~~~apg~~~~~~~~~-------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 180 AGVDIAAPGGDILSSPTT-------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCceEEeCcCCccCcccC-------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 467999999999875211 12689999999999999999999999999999999999999875
No 41
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.64 E-value=1.8e-15 Score=132.45 Aligned_cols=121 Identities=45% Similarity=0.684 Sum_probs=97.5
Q ss_pred EEeCCCceEeEEeeeeccCCCCceeeEEecCC--CCCCCcccCCCCCCCccccceEEEEecCCCC-chhhhhHHHHhcCc
Q 047896 72 AQLGNHATYDVEILFMLVNFTSMQLPLVYPGG--RNSSAAFCLPGSLNNIDVKGKVVVCERDGNM-RRNETEYYVKEAGG 148 (475)
Q Consensus 72 ~~~g~g~~~~g~s~~~~~~~~~~~~~lv~~~~--~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~-~~~~k~~~~~~aGa 148 (475)
+++|||+.+.|+++++... ..++++|... .......|.+..++..+++||||||+|+. | .+.+|..+++++||
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~-~~~~~~k~~~~~~~GA 77 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGG-NTSRVAKGDAVKAAGG 77 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCC-CccHHHHHHHHHHcCC
Confidence 6899999999999986432 4677776433 12234789988888889999999999998 9 99999999999999
Q ss_pred eEEEEEecCCCccccccccccccEEEEchhhhhhHHHhhhcCCCCceE
Q 047896 149 AAMILISDKFDAYSAILETHVLPAVQVGYATGESIKAYINSTSSPTVA 196 (475)
Q Consensus 149 ~gvIi~~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~ 196 (475)
.|+|++++.............+|++.|..++|+.|++|++++.+++++
T Consensus 78 ~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 78 AGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999876543322223467999999999999999999988777655
No 42
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.62 E-value=3.6e-15 Score=133.80 Aligned_cols=116 Identities=26% Similarity=0.381 Sum_probs=91.6
Q ss_pred CCceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCcccccc-ccccc
Q 047896 92 TSMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYSAIL-ETHVL 170 (475)
Q Consensus 92 ~~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~~~~-~~~~i 170 (475)
...+.+|||.+. |...++...+++||||||+|+. |.|.+|+.+++++||+|+|+|++......... ....+
T Consensus 24 ~~~~~~lv~~g~-------g~~~d~~~~dv~GkIvL~~rg~-c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 24 LGKTYELVDAGL-------GTPEDFEGKDVKGKIALIQRGE-ITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CCcEEEEEEccC-------CchhccCCCCccceEEEEECCC-CCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 456789999764 4445566678999999999999 99999999999999999999998653221111 12568
Q ss_pred cEEEEchhhhhhHHHhhhcCCCCceEEEee--cccccCCCceecccCCCCCC
Q 047896 171 PAVQVGYATGESIKAYINSTSSPTVAILLR--TGNKKSAPEVASLSARGPNK 220 (475)
Q Consensus 171 P~~~i~~~~g~~l~~~~~~~~~~~~~i~~~--v~~~~~~~~~a~fSs~Gp~~ 220 (475)
|+++|++++|+.|++++++ .++|.|. .... +++.++.||||||..
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~~~-~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKEKA-TNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccccc-cCCccccccCcCCCC
Confidence 9999999999999999977 5666665 2233 778899999999964
No 43
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.38 E-value=3.9e-12 Score=111.02 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=76.8
Q ss_pred eeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCccc--cc-c--cccc
Q 047896 95 QLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYS--AI-L--ETHV 169 (475)
Q Consensus 95 ~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~--~~-~--~~~~ 169 (475)
.-+|++.+.. ..++|.+..++..+++||||||+||. |.|.+|..+++++||+++|+||+...... .. . ....
T Consensus 18 ~~~lv~~~~~--~~~gC~~~~~~~~~~~GkIvLv~rg~-c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~ 94 (122)
T cd04816 18 TAPLVPLDPE--RPAGCDASDYDGLDVKGAIVLVDRGG-CPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLK 94 (122)
T ss_pred EEEEEEcCCC--CccCCCccccCCCCcCCeEEEEECCC-CCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCe
Confidence 4577776532 24789988888889999999999999 99999999999999999999997653211 11 1 2356
Q ss_pred ccEEEEchhhhhhHHHhhhcCCC
Q 047896 170 LPAVQVGYATGESIKAYINSTSS 192 (475)
Q Consensus 170 iP~~~i~~~~g~~l~~~~~~~~~ 192 (475)
+|+++|++++|++|+++++++.+
T Consensus 95 iP~~~Is~~~G~~l~~~l~~g~~ 117 (122)
T cd04816 95 VPVGVITKAAGAALRRRLGAGET 117 (122)
T ss_pred eeEEEEcHHHHHHHHHHHcCCCE
Confidence 99999999999999999987754
No 44
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.37 E-value=3e-12 Score=110.84 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=72.7
Q ss_pred CcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCc-ccc--c-----cccccccEEEEchhh
Q 047896 108 AAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDA-YSA--I-----LETHVLPAVQVGYAT 179 (475)
Q Consensus 108 ~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~-~~~--~-----~~~~~iP~~~i~~~~ 179 (475)
.++|.+.. +..+++|||+|++||. |+|.+|+.+|+++||+++||||+.... ... + .....||+++|++++
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~-C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGG-CSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCC-CCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 47898743 3568999999999999 999999999999999999999976432 111 1 123579999999999
Q ss_pred hhhHHHhhhcCCCCceEEE
Q 047896 180 GESIKAYINSTSSPTVAIL 198 (475)
Q Consensus 180 g~~l~~~~~~~~~~~~~i~ 198 (475)
|+.|++.+..+..+.+.|.
T Consensus 99 G~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 99 GYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHHcCCceEEeee
Confidence 9999999999888776653
No 45
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.37 E-value=2.7e-12 Score=132.41 Aligned_cols=66 Identities=30% Similarity=0.423 Sum_probs=51.4
Q ss_pred CCcEEEeccCCCCCCCC---CCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-----------CCCCCCCCeEEEEeeeccc
Q 047896 1 GVDVISISYGSPPLPFY---DDPIASAAFTAVRNGIFVSCAAGNKGPDPS-----------SSTNGAPWILTVGASTTDR 66 (475)
Q Consensus 1 GvDVIn~SlG~~~~~~~---~d~~a~aa~~a~~~GV~vV~AAGN~Gp~~~-----------t~~~~ap~visVaAs~~d~ 66 (475)
+++|||||+|.....+. .+.+..+..+|.++||+||+|+||+|.... ..++..|||++||+++...
T Consensus 119 ~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 119 LPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred CCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 58999999998743221 245677788889999999999999997643 3467899999999976543
No 46
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.37 E-value=2.6e-12 Score=110.94 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=75.0
Q ss_pred CceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCccc--cc--cccc
Q 047896 93 SMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYS--AI--LETH 168 (475)
Q Consensus 93 ~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~--~~--~~~~ 168 (475)
...+||+... +...|.+.++...+++|||+|++||. |+|.+|+.+|+++||+++||||+...... .. ....
T Consensus 19 ~~~~~~~~~~----~~~gC~~~~~~~~~l~gkIaLV~RG~-CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 19 ATLLPLRNLT----SSVLCSASDVPPGGLKGKAVVVMRGN-CTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred CcceeeecCC----CcCCCCccccCccccCCeEEEEECCC-cCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 3456776654 34689998887889999999999999 99999999999999999999998653111 11 1345
Q ss_pred cccEEEEchhhhhhHHHhhhcC
Q 047896 169 VLPAVQVGYATGESIKAYINST 190 (475)
Q Consensus 169 ~iP~~~i~~~~g~~l~~~~~~~ 190 (475)
.||+++|++++|+.|++.+.+.
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred cccEEEEeHHHHHHHHHHhccC
Confidence 7899999999999999988643
No 47
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.34 E-value=3.8e-12 Score=113.19 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=73.1
Q ss_pred CCcccCCCCC--CCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCcccc--cc--ccccccEEEEchhhh
Q 047896 107 SAAFCLPGSL--NNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYSA--IL--ETHVLPAVQVGYATG 180 (475)
Q Consensus 107 ~~~~C~~~~~--~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~~--~~--~~~~iP~~~i~~~~g 180 (475)
+.++|.+... +..++.|||||++||. |+|.+|..+|+++||+++||||+...+... +. ....+|+++|+.++|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~-C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGN-CTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCC-CCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 4578998876 5678999999999999 999999999999999999999987522111 11 234689999999999
Q ss_pred hhHHHhhhcCCCCceE
Q 047896 181 ESIKAYINSTSSPTVA 196 (475)
Q Consensus 181 ~~l~~~~~~~~~~~~~ 196 (475)
+.|+++++++.+.+++
T Consensus 122 ~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 122 MEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 9999999888765544
No 48
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.31 E-value=2.1e-11 Score=106.35 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=75.2
Q ss_pred CceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCcc-c-cc--cccc
Q 047896 93 SMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAY-S-AI--LETH 168 (475)
Q Consensus 93 ~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~-~-~~--~~~~ 168 (475)
...-+|++.. .++|.+.++ +.+++|||||++||. |.|.+|..+++++||+++|+||+...+. . .. .+..
T Consensus 21 ~~~g~lv~~~-----~~gC~~~~~-~~~~~gkIvlv~rg~-c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~ 93 (122)
T cd02130 21 EVTGPLVVVP-----NLGCDAADY-PASVAGNIALIERGE-CPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGP 93 (122)
T ss_pred CcEEEEEEeC-----CCCCCcccC-CcCCCCEEEEEECCC-CCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCC
Confidence 3356777764 347987655 357999999999999 9999999999999999999999863221 1 11 1245
Q ss_pred cccEEEEchhhhhhHHHhhhcCCCCce
Q 047896 169 VLPAVQVGYATGESIKAYINSTSSPTV 195 (475)
Q Consensus 169 ~iP~~~i~~~~g~~l~~~~~~~~~~~~ 195 (475)
.||++.|++++|+.|++.++++.+.++
T Consensus 94 ~Ip~v~Is~~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 94 YVPTVGISQEDGKALVAALANGGEVSA 120 (122)
T ss_pred EeeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 799999999999999999988876443
No 49
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.29 E-value=3.4e-12 Score=106.95 Aligned_cols=91 Identities=30% Similarity=0.435 Sum_probs=67.6
Q ss_pred eeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCcc----ccccccccc
Q 047896 95 QLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAY----SAILETHVL 170 (475)
Q Consensus 95 ~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~----~~~~~~~~i 170 (475)
..|||...... ....|.+..+...+++||||||+||. |+|.+|+.+|+++||+|+||++...... ........|
T Consensus 7 ~~~lV~~~~~~-~~~~~~~~~~~~~~~~gkIvlv~rg~-~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~i 84 (101)
T PF02225_consen 7 TGPLVPAGNGI-DEGDCCPSDYNGSDVKGKIVLVERGS-CSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDI 84 (101)
T ss_dssp EEEEEEETTEE-ECCHHHHHHTSTSTCTTSEEEEESTS-SCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBS
T ss_pred EEEEEEecCCC-CcccccccccCCccccceEEEEecCC-CCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEE
Confidence 45666333211 13456677788899999999999999 9999999999999999999999221111 112335789
Q ss_pred cEEEEchhhhhhHHHhh
Q 047896 171 PAVQVGYATGESIKAYI 187 (475)
Q Consensus 171 P~~~i~~~~g~~l~~~~ 187 (475)
|+++|++++|+.|++|+
T Consensus 85 P~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 85 PVVFISYEDGEALLAYI 101 (101)
T ss_dssp EEEEE-HHHHHHHHHHH
T ss_pred EEEEeCHHHHhhhhccC
Confidence 99999999999999985
No 50
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.28 E-value=3.4e-11 Score=105.94 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=72.7
Q ss_pred eeEEecCCC-CCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCccc-cccccccccEE
Q 047896 96 LPLVYPGGR-NSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYS-AILETHVLPAV 173 (475)
Q Consensus 96 ~~lv~~~~~-~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~-~~~~~~~iP~~ 173 (475)
+||+..... ....++|.+.+.+..+++|||+|++||. |+|.+|+++++++||+++||||+.+.... ...+...+|.+
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~-c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~ 106 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGT-CTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAA 106 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCC-CCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeE
Confidence 666544332 3356899987666668999999999999 99999999999999999999998654321 12233446666
Q ss_pred EEchhhhhhHHHhhhcCCC
Q 047896 174 QVGYATGESIKAYINSTSS 192 (475)
Q Consensus 174 ~i~~~~g~~l~~~~~~~~~ 192 (475)
.+ +++|++|++.++.+..
T Consensus 107 ~~-~~~G~~l~~~l~~G~~ 124 (129)
T cd02124 107 VT-PEDGEAWIDALAAGSN 124 (129)
T ss_pred Ee-HHHHHHHHHHHhcCCe
Confidence 66 9999999999987754
No 51
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.27 E-value=1.5e-11 Score=106.66 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=70.2
Q ss_pred CCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCccc-ccc---ccccccEEEEchhhhhh
Q 047896 107 SAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYS-AIL---ETHVLPAVQVGYATGES 182 (475)
Q Consensus 107 ~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~-~~~---~~~~iP~~~i~~~~g~~ 182 (475)
+.+.|.+... ..+++||||||+|+. |+|.+|..+++++||+|+|+|++...... .+. ....+|+++|++++|+.
T Consensus 26 ~~~~C~~~~~-~~~v~GkIvL~~rg~-c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 26 NTDGCTAFTN-AAAFAGKIALIDRGT-CNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred cccccCCCCc-CCCCCCEEEEEECCC-CCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 3578988776 356999999999999 99999999999999999999998654211 111 23579999999999999
Q ss_pred HHHhhhcCCCCce
Q 047896 183 IKAYINSTSSPTV 195 (475)
Q Consensus 183 l~~~~~~~~~~~~ 195 (475)
|++|++.+...++
T Consensus 104 l~~~l~~g~~v~v 116 (118)
T cd04818 104 LKAALAAGGTVTV 116 (118)
T ss_pred HHHHHhcCCcEEE
Confidence 9999987765443
No 52
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.25 E-value=3.9e-11 Score=105.25 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=69.1
Q ss_pred CCcccCCCCCC--Cc----cccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCccccc-----------ccccc
Q 047896 107 SAAFCLPGSLN--NI----DVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYSAI-----------LETHV 169 (475)
Q Consensus 107 ~~~~C~~~~~~--~~----~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~~~-----------~~~~~ 169 (475)
+.++|++.... +. ...+||||++||. |+|.+|+.+|+++||+++|+||+.+.....+ .+...
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~-C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGG-CFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCC-cCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCce
Confidence 35689886543 22 3789999999999 9999999999999999999999865422111 12346
Q ss_pred ccEEEEchhhhhhHHHhhhcCCCCce
Q 047896 170 LPAVQVGYATGESIKAYINSTSSPTV 195 (475)
Q Consensus 170 iP~~~i~~~~g~~l~~~~~~~~~~~~ 195 (475)
||+++|+.++|+.|++.+.++..+++
T Consensus 100 IP~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 100 IPSALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EeEEEECHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999988875443
No 53
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.25 E-value=3.4e-11 Score=107.48 Aligned_cols=91 Identities=15% Similarity=0.332 Sum_probs=72.2
Q ss_pred eeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCcccccc-------cc
Q 047896 95 QLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYSAIL-------ET 167 (475)
Q Consensus 95 ~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~~~~-------~~ 167 (475)
..+|+... +.++|.+.+ .+++|||||++||. |+|.+|+.+++++||+++||||+.+.. ..+. ..
T Consensus 39 ~~~lv~~~----~~~gC~~~~---~~~~g~IvLV~RG~-C~F~~K~~nA~~aGA~avIv~n~~~~~-~~~~~~~~~~~~~ 109 (139)
T cd02132 39 KTRAVLAN----PLDCCSPST---SKLSGSIALVERGE-CAFTEKAKIAEAGGASALLIINDQEEL-YKMVCEDNDTSLN 109 (139)
T ss_pred EEEEEECC----cccccCCCC---cccCCeEEEEECCC-CCHHHHHHHHHHcCCcEEEEEECCCcc-cccccCCCCCCCC
Confidence 45666543 347898754 47999999999999 999999999999999999999976432 1111 13
Q ss_pred ccccEEEEchhhhhhHHHhhhcCCCCc
Q 047896 168 HVLPAVQVGYATGESIKAYINSTSSPT 194 (475)
Q Consensus 168 ~~iP~~~i~~~~g~~l~~~~~~~~~~~ 194 (475)
..||+++|++++|+.|++++.++...+
T Consensus 110 ~~IP~v~Is~~~G~~L~~~l~~g~~Vt 136 (139)
T cd02132 110 ISIPVVMIPQSAGDALNKSLDQGKKVE 136 (139)
T ss_pred CcEeEEEecHHHHHHHHHHHHcCCcEE
Confidence 579999999999999999998876543
No 54
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.25 E-value=2.2e-11 Score=106.83 Aligned_cols=85 Identities=22% Similarity=0.240 Sum_probs=68.2
Q ss_pred CcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCc------cccc------cccccccEEEE
Q 047896 108 AAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDA------YSAI------LETHVLPAVQV 175 (475)
Q Consensus 108 ~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~------~~~~------~~~~~iP~~~i 175 (475)
.++|.+... ..+++|||+|++||. |+|.+|+.+|+++||.++|+||+.... ...+ .+...||+++|
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~-C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I 104 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGD-CMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFL 104 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCC-CcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEE
Confidence 468987543 567999999999999 999999999999999999999875432 1111 12357999999
Q ss_pred chhhhhhHHHhhhcCCCCc
Q 047896 176 GYATGESIKAYINSTSSPT 194 (475)
Q Consensus 176 ~~~~g~~l~~~~~~~~~~~ 194 (475)
++.+|+.|+++++.+...+
T Consensus 105 ~~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 105 FSKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred EHHHHHHHHHHHHhCCceE
Confidence 9999999999998765433
No 55
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.22 E-value=3.4e-11 Score=104.88 Aligned_cols=85 Identities=26% Similarity=0.406 Sum_probs=70.0
Q ss_pred CCcccCCCC--CCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCccccc------cccccccEEEEchh
Q 047896 107 SAAFCLPGS--LNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYSAI------LETHVLPAVQVGYA 178 (475)
Q Consensus 107 ~~~~C~~~~--~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~~~------~~~~~iP~~~i~~~ 178 (475)
+..+|.+.. +...+++||||||+|+. |.|.+|..+++++||+|+|++++........ .....+|++.|+.+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~-~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGG-CSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCC-cCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 346788776 67789999999999999 9999999999999999999999865321111 13457999999999
Q ss_pred hhhhHHHhhhcCCC
Q 047896 179 TGESIKAYINSTSS 192 (475)
Q Consensus 179 ~g~~l~~~~~~~~~ 192 (475)
+|+.|++++.++.+
T Consensus 108 ~g~~l~~~~~~~~~ 121 (126)
T cd00538 108 DGEALLSLLEAGKT 121 (126)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999987654
No 56
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.20 E-value=5.8e-11 Score=102.66 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=66.3
Q ss_pred CCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCc-cccc-----cccccccEEEEchhhh
Q 047896 107 SAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDA-YSAI-----LETHVLPAVQVGYATG 180 (475)
Q Consensus 107 ~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~-~~~~-----~~~~~iP~~~i~~~~g 180 (475)
+.++|.+. +..+++|||||++||. |+|.+|+.+++++||+++|+||+.... ...+ .+...||+++|++++|
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~-CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGG-CGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCC-CCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 45789875 5688999999999999 999999999999999999999876532 1111 2235799999999999
Q ss_pred hhHHHhhhcC
Q 047896 181 ESIKAYINST 190 (475)
Q Consensus 181 ~~l~~~~~~~ 190 (475)
++|++++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999987543
No 57
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3e-10 Score=119.89 Aligned_cols=77 Identities=43% Similarity=0.698 Sum_probs=63.4
Q ss_pred CceecccCCCCCCCCCCCccCcEEecCcceEe-----ecCCCcccccccCcceEEeCCCccchHHHHHHHHHHHhcCC-C
Q 047896 208 PEVASLSARGPNKVSPGILKPDIIGPGVSILA-----AWPSSQENITKTKATFEIADGTSMSCPHLSGIAALLKSTHP-D 281 (475)
Q Consensus 208 ~~~a~fSs~Gp~~~~~~~~KPdi~APG~~I~s-----a~~~~~~~~~~~~~~y~~~sGTSmA~P~vAG~aALl~~~~p-~ 281 (475)
+.++.||++|+.. ..++.|||.+|.+ .+++.. ..|..++||||++||++|++||+++.+| .
T Consensus 316 ~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~-------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~ 382 (508)
T COG1404 316 DTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG-------ADYVTLSGTSMAAPHVSGVAALVLSANPNE 382 (508)
T ss_pred CccccccccCCCC------CcceeCCCccccccccceeeeCCc-------cceEeeccccccccHHHHHHHHHHccCccc
Confidence 4567788888752 2399999999998 555410 2499999999999999999999999999 8
Q ss_pred CCHHHHHHHHHhcccc
Q 047896 282 WSPAAIKSAIMTTADI 297 (475)
Q Consensus 282 ~s~~~ik~~L~~tA~~ 297 (475)
+++.+++..+..++..
T Consensus 383 ~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 383 LTPAQVRNLIVTTAGL 398 (508)
T ss_pred CCHHHHHHHHhhcccc
Confidence 9999999998888763
No 58
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.16 E-value=8.8e-11 Score=104.21 Aligned_cols=87 Identities=23% Similarity=0.282 Sum_probs=67.8
Q ss_pred eeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCc-----hhhhhHHHHhcCceEEEEEecC--CCccc-cccc
Q 047896 95 QLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMR-----RNETEYYVKEAGGAAMILISDK--FDAYS-AILE 166 (475)
Q Consensus 95 ~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~-----~~~k~~~~~~aGa~gvIi~~~~--~~~~~-~~~~ 166 (475)
.-+|++.+.. .| ++.+.+++|||+|++||. |+ |.+|+++|+++||+|+||||+. ..... .+.+
T Consensus 37 tg~lv~~g~~-----g~---d~~~~d~~GkIaLI~RG~-c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~ 107 (139)
T cd04817 37 TGSLYYCGTS-----GG---SYICGGMAGKICLIERGG-NSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVD 107 (139)
T ss_pred eEEEEEccCC-----Cc---cccCCCcCccEEEEECCC-CCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccC
Confidence 4577776532 25 345668999999999999 99 9999999999999999999996 22111 1122
Q ss_pred ---cccccEEEEchhhhhhHHHhhhcC
Q 047896 167 ---THVLPAVQVGYATGESIKAYINST 190 (475)
Q Consensus 167 ---~~~iP~~~i~~~~g~~l~~~~~~~ 190 (475)
...||++.|++++|++|++.+..+
T Consensus 108 ~~~~~~IP~v~is~~dG~~L~~~l~~~ 134 (139)
T cd04817 108 TNNDTTIPSVSVDRADGQALLAALGQS 134 (139)
T ss_pred CCCCceEeEEEeeHHHHHHHHHHhcCC
Confidence 358999999999999999998544
No 59
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.14 E-value=1.4e-10 Score=105.11 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=69.5
Q ss_pred CcccCCCCCCC---ccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCcccccc------ccccccEEEEchh
Q 047896 108 AAFCLPGSLNN---IDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYSAIL------ETHVLPAVQVGYA 178 (475)
Q Consensus 108 ~~~C~~~~~~~---~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~~~~------~~~~iP~~~i~~~ 178 (475)
.++|.+....+ .++.|||||++||. |+|.+|+.+|+++||+++|+||+.......+. ....||+++|+++
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~-CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGN-CSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCC-CCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 57898876543 78999999999999 99999999999999999999998654322221 1457999999999
Q ss_pred hhhhHHHhhhcCCC
Q 047896 179 TGESIKAYINSTSS 192 (475)
Q Consensus 179 ~g~~l~~~~~~~~~ 192 (475)
+|+.|+.++...+.
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999977653
No 60
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.99 E-value=3.7e-09 Score=92.89 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=71.3
Q ss_pred CceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCC--chhhhhHHHHhcCceEEEEEecCCCccccc------
Q 047896 93 SMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNM--RRNETEYYVKEAGGAAMILISDKFDAYSAI------ 164 (475)
Q Consensus 93 ~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~--~~~~k~~~~~~aGa~gvIi~~~~~~~~~~~------ 164 (475)
..+.+|||.+.+. +.++...+++|||||++|+. | ++.+|.++++++||+|+|++++........
T Consensus 22 ~~~~~lV~~g~G~-------~~d~~~~~v~GkIvlv~~g~-~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYGL-------PKDFDGLDLEGKIAVVKRDD-PDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCCC-------HHHcCCCCCCCeEEEEEcCC-CchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 4578899987542 22344567999999999999 8 889999999999999999998754432211
Q ss_pred -cccccccEEEEchhhhhhHHHhhhcCC
Q 047896 165 -LETHVLPAVQVGYATGESIKAYINSTS 191 (475)
Q Consensus 165 -~~~~~iP~~~i~~~~g~~l~~~~~~~~ 191 (475)
.....+|++.|+.+||++|++.++.+.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999998654
No 61
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.88 E-value=2.7e-08 Score=85.41 Aligned_cols=81 Identities=21% Similarity=0.439 Sum_probs=58.4
Q ss_pred CCeEEEEEEEecCCCCeeEEEEEeC--------CCC----------e-EEEEEcCeEEEecCCcEEEEEEEEEecCC---
Q 047896 390 SPQTYNRTIANVGEANSSYTHQIVA--------PEG----------V-EISVQPNEISFTERNQKVTYSITFTRSQK--- 447 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~ty~~~~~~--------~~g----------~-~v~v~p~~l~~~~~g~~~~~~vt~~~~~~--- 447 (475)
...++++||+|.|+...+|++++.. ..| . .+...|.+|++++ |++++++|+|+.+..
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEehhcCCc
Confidence 3578899999999999999998871 011 1 6888999999988 999999999999752
Q ss_pred CCCceEEEEEEEEe-CCc-eEEEEEE
Q 047896 448 TSASYAQGYLSWVS-TQH-TVRSPIA 471 (475)
Q Consensus 448 ~~~~~~~G~i~~~~-~~~-~vr~P~~ 471 (475)
.++++|+|||.+++ +.+ .+++||+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 33599999999995 454 8999996
No 62
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=98.54 E-value=1.8e-07 Score=82.90 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=61.7
Q ss_pred CCCccccceEEEEecCCCC------chhhh-------hHHHHhcCceEEEEEecCCC-------ccccc-cccccccEEE
Q 047896 116 LNNIDVKGKVVVCERDGNM------RRNET-------EYYVKEAGGAAMILISDKFD-------AYSAI-LETHVLPAVQ 174 (475)
Q Consensus 116 ~~~~~v~GkIVl~~rg~~~------~~~~k-------~~~~~~aGa~gvIi~~~~~~-------~~~~~-~~~~~iP~~~ 174 (475)
++..+++|||||++|+. | .|..| .+.++++||.++|+++.... +.... .....||++.
T Consensus 33 ~~~~~v~GKIvlv~~~~-~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 33 APAGAVKGKIVFFNQPM-VRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred cchhhcCCeEEEecCCc-cccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence 34668999999999999 9 89888 68999999999999985322 11111 2235699999
Q ss_pred EchhhhhhHHHhhhcCCCCc
Q 047896 175 VGYATGESIKAYINSTSSPT 194 (475)
Q Consensus 175 i~~~~g~~l~~~~~~~~~~~ 194 (475)
|+.+|++.|.+.++.+..++
T Consensus 112 is~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 112 ISVEDADMLERLAARGKPIR 131 (134)
T ss_pred echhcHHHHHHHHhCCCCeE
Confidence 99999999999998876543
No 63
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.34 E-value=1.4e-06 Score=80.78 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=65.8
Q ss_pred CceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCC-cc----------
Q 047896 93 SMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFD-AY---------- 161 (475)
Q Consensus 93 ~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~-~~---------- 161 (475)
..+-+|||.+.+.. .|+ ..+.....+++|||||++||. |.+.+|+++|+++||+|+|||++... ..
T Consensus 28 ~v~g~lVyvn~G~~-~Df-~~L~~~gv~v~GkIvLvr~G~-~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~ 104 (183)
T cd02128 28 TVTGKLVYANYGRK-KDF-EDLQSVGVSVNGSVVLVRAGK-ISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGH 104 (183)
T ss_pred ceEEEEEEcCCCCH-HHH-HHHHhcCCCCCCeEEEEECCC-CCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecc
Confidence 33678898864311 111 000112568999999999999 99999999999999999999987311 00
Q ss_pred -------cc-----------c--c---ccccccEEEEchhhhhhHHHhhhc
Q 047896 162 -------SA-----------I--L---ETHVLPAVQVGYATGESIKAYINS 189 (475)
Q Consensus 162 -------~~-----------~--~---~~~~iP~~~i~~~~g~~l~~~~~~ 189 (475)
.. . . ....||+.-|+++++..|++.+.-
T Consensus 105 ~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 105 VHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred eeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 00 0 0 123599999999999999999854
No 64
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.16 E-value=9.4e-06 Score=72.38 Aligned_cols=65 Identities=26% Similarity=0.260 Sum_probs=53.4
Q ss_pred CceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCC------------------chhhhhHHHHhcCceEEEEE
Q 047896 93 SMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNM------------------RRNETEYYVKEAGGAAMILI 154 (475)
Q Consensus 93 ~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~------------------~~~~k~~~~~~aGa~gvIi~ 154 (475)
....||||.+.+-. ...|.-.++...|++|||||+.||. | .+..|.++++++||+|||++
T Consensus 19 ~~~aelVfvGyGi~-a~~~~~dDYag~DVkGKIVlv~~g~-P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 19 IKDAPLVFVGYGIK-APELSWDDYAGLDVKGKVVVVLRND-PQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred ccceeeEEecCCcC-CCCCChhhcCCCCCCCcEEEEEcCC-CCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 34688999886532 3458877888899999999999997 7 46789999999999999999
Q ss_pred ecCCC
Q 047896 155 SDKFD 159 (475)
Q Consensus 155 ~~~~~ 159 (475)
++...
T Consensus 97 ~~~~~ 101 (142)
T cd04814 97 HELAP 101 (142)
T ss_pred eCCCc
Confidence 98653
No 65
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.05 E-value=2e-05 Score=71.04 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=65.3
Q ss_pred CceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCC-----------------CCchhhhhHHHHhcCceEEEEEe
Q 047896 93 SMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDG-----------------NMRRNETEYYVKEAGGAAMILIS 155 (475)
Q Consensus 93 ~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~-----------------~~~~~~k~~~~~~aGa~gvIi~~ 155 (475)
..+-+|||.+.+. ....|...++...|++|||||+.|+. .|.+..|..+|.++||+|||+|+
T Consensus 19 ~vtg~lVfvGyGi-~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 19 AVTAPVVFAGYGI-TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred CceEeEEEecCCc-CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 3467899988653 23568777777889999999998773 27888999999999999999999
Q ss_pred cCCCcc---ccccccccccEEEEchhhhhhHHHh
Q 047896 156 DKFDAY---SAILETHVLPAVQVGYATGESIKAY 186 (475)
Q Consensus 156 ~~~~~~---~~~~~~~~iP~~~i~~~~g~~l~~~ 186 (475)
+..... ...+....-..+.|+....+.++..
T Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 98 GPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred CCcccCcccccccccCccceEEechHHHHHHhhh
Confidence 754321 1111111112666777777777664
No 66
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.03 E-value=1.1e-05 Score=71.49 Aligned_cols=64 Identities=33% Similarity=0.408 Sum_probs=52.5
Q ss_pred CceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCc------------hhhhhHHHHhcCceEEEEEecCC
Q 047896 93 SMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMR------------RNETEYYVKEAGGAAMILISDKF 158 (475)
Q Consensus 93 ~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~------------~~~k~~~~~~aGa~gvIi~~~~~ 158 (475)
..+-+|||.+.+.. ...|...++...|++|||||+.++. |. +..|.++|.++||+|||+|++..
T Consensus 21 ~v~gelVfvGyG~~-~~~~~~~Dy~~iDVkGKIVlv~~g~-p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 21 SVEAPLVFVGYGLV-APELGHDDYAGLDVKGKIVVVLSGG-PAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred CceEeEEEecCCcC-ccCcCHhhccCCCCCCeEEEEEcCC-CCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 34678999886532 3568877788889999999999988 73 66899999999999999999743
No 67
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=97.95 E-value=9.7e-06 Score=71.78 Aligned_cols=102 Identities=23% Similarity=0.195 Sum_probs=79.3
Q ss_pred eeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCcccc------c----
Q 047896 95 QLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYSA------I---- 164 (475)
Q Consensus 95 ~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~~------~---- 164 (475)
.++||.+. +..+|... -+.-++.|.|+|++||+ |+|..|..++.++||.++||.++....... +
T Consensus 65 ~~~lV~ad----Pp~aC~el-rN~~f~~d~vaL~eRGe-CSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~s 138 (193)
T KOG3920|consen 65 NLELVLAD----PPHACEEL-RNEIFAPDSVALMERGE-CSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDES 138 (193)
T ss_pred CcceeecC----ChhHHHHH-hhcccCCCcEEEEecCC-ceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccc
Confidence 56777665 46789764 34567889999999999 999999999999999999998876543221 1
Q ss_pred cccccccEEEEchhhhhhHHHhhhcCCCCceEEEeecc
Q 047896 165 LETHVLPAVQVGYATGESIKAYINSTSSPTVAILLRTG 202 (475)
Q Consensus 165 ~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~i~~~v~ 202 (475)
.+...||++++-..+|-.++.-++....+-+.|..+|.
T Consensus 139 q~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPVn 176 (193)
T KOG3920|consen 139 QDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPVN 176 (193)
T ss_pred ccccCCceEEEeccceEEEehhHHHhCCccEEEecccc
Confidence 23568999999999999998888777767677766544
No 68
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=97.94 E-value=2.7e-05 Score=74.55 Aligned_cols=57 Identities=32% Similarity=0.440 Sum_probs=46.5
Q ss_pred CceeeEEecCCCCCCCcccCCCCC-----CCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecC
Q 047896 93 SMQLPLVYPGGRNSSAAFCLPGSL-----NNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDK 157 (475)
Q Consensus 93 ~~~~~lv~~~~~~~~~~~C~~~~~-----~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~ 157 (475)
..+.+|||++. |...++ ...+++|||||+++|. |.+.+|+++|+++||+|||||++.
T Consensus 44 ~v~g~lVyvny-------G~~~D~~~L~~~gvdv~GKIvLvr~G~-~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 44 NVTAELVYANY-------GSPEDFEYLEDLGIDVKGKIVIARYGG-IFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred CceEEEEEcCC-------CcHHHHHHHhhcCCCCCCeEEEEECCC-ccHHHHHHHHHHcCCEEEEEEeCc
Confidence 34678999874 443333 2568999999999999 988999999999999999999863
No 69
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=97.94 E-value=2.2e-05 Score=81.10 Aligned_cols=85 Identities=19% Similarity=0.310 Sum_probs=65.7
Q ss_pred CCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCcc------ccccccccccEEEEchhhh
Q 047896 107 SAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAY------SAILETHVLPAVQVGYATG 180 (475)
Q Consensus 107 ~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~------~~~~~~~~iP~~~i~~~~g 180 (475)
+.|.|.+ ...+++||++++.||. |.|.+|.+.++++||.++++.|+..+-. ........||+++|.+++|
T Consensus 83 pld~cs~---~~~kl~~~~~~v~RGn-C~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~ 158 (541)
T KOG2442|consen 83 PLDSCST---LQSKLSGKVALVFRGN-CSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDG 158 (541)
T ss_pred CccccCC---CCccccceeEEEeccc-ceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhH
Confidence 3456654 3567999999999999 9999999999999999999999854211 1112246799999999999
Q ss_pred hhHHHhhhcCCCCce
Q 047896 181 ESIKAYINSTSSPTV 195 (475)
Q Consensus 181 ~~l~~~~~~~~~~~~ 195 (475)
+.+.....++.++++
T Consensus 159 ~~l~~~~~~~~~V~~ 173 (541)
T KOG2442|consen 159 RDLNKSTRSNDNVEL 173 (541)
T ss_pred HHHHhhhccCCeEEE
Confidence 999876655554433
No 70
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=97.46 E-value=0.0034 Score=52.45 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=70.5
Q ss_pred CCCCCCccEEeecCCCCeEEEEEEEecCCCCeeEEEEEeCCCCeEEEEEcCeEEEecCCcEEEEEEEEEecCCCCCceEE
Q 047896 375 EAELNYPSFSIKLGSSPQTYNRTIANVGEANSSYTHQIVAPEGVEISVQPNEISFTERNQKVTYSITFTRSQKTSASYAQ 454 (475)
Q Consensus 375 ~~~lN~ps~~~~~~~~~~t~~rtvtN~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~ 454 (475)
+..|++..+.+ +...+.+++|+|.+.....|++.........++++|..=.+.| |++.+++|+|.+.... +.++
T Consensus 8 P~~ldFG~v~~---g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~~~--g~~~ 81 (102)
T PF14874_consen 8 PKELDFGNVFV---GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTKPL--GDYE 81 (102)
T ss_pred CCEEEeeEEcc---CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCCCC--ceEE
Confidence 34555554432 3356777889999999999998765434556788888777877 9999999999965443 4788
Q ss_pred EEEEEEeCCceEEEEEEEEe
Q 047896 455 GYLSWVSTQHTVRSPIAVSF 474 (475)
Q Consensus 455 G~i~~~~~~~~vr~P~~v~~ 474 (475)
+.|.+.-.+..+.+|+-++.
T Consensus 82 ~~l~i~~e~~~~~i~v~a~~ 101 (102)
T PF14874_consen 82 GSLVITTEGGSFEIPVKAEV 101 (102)
T ss_pred EEEEEEECCeEEEEEEEEEE
Confidence 99999877788999987653
No 71
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00051 Score=69.48 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=63.9
Q ss_pred CcccCCCCC---CCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecCCCccccc----cccccccEEEEchhhh
Q 047896 108 AAFCLPGSL---NNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDKFDAYSAI----LETHVLPAVQVGYATG 180 (475)
Q Consensus 108 ~~~C~~~~~---~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~~~~~~~~----~~~~~iP~~~i~~~~g 180 (475)
.++|.+... ....-...++|+.||+ |+|.+|+.+|+++|.+++|+||+........ .....+++++++...|
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~-CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGG-CSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccC-CchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 468887532 2345667899999999 9999999999999999999999865543221 2346789999999999
Q ss_pred hhHHHhhhc
Q 047896 181 ESIKAYINS 189 (475)
Q Consensus 181 ~~l~~~~~~ 189 (475)
+.|..|...
T Consensus 141 e~l~~~~~~ 149 (348)
T KOG4628|consen 141 ELLSSYAGR 149 (348)
T ss_pred HHHHHhhcc
Confidence 999998643
No 72
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.32 E-value=0.00025 Score=63.37 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=45.2
Q ss_pred CceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecC
Q 047896 93 SMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDK 157 (475)
Q Consensus 93 ~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~ 157 (475)
+.+-++||+..+.. .|+=... +.-+++|||||++.|. ..+..|+++|+++||+|+|||.+.
T Consensus 14 ~Vtg~~VYvNyG~~-eDf~~L~--~~V~v~GkIvi~RyG~-~~RG~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 14 TLQAEVVDVQYGSV-EDLRRIR--DNMNVTNQIALLKLGQ-APLLYKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred ceEEEEEEecCCCH-HHHHHHH--hCCCccceEEEEeccC-cchHHHHHHHHHCCCeEEEEecCh
Confidence 34667888775421 1111111 1267999999999999 889999999999999999999873
No 73
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.36 E-value=0.014 Score=53.18 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=44.0
Q ss_pred CceeeEEecCCCCCCCcccCCCCCCCccccceEEEEecCCC------------------CchhhhhHHHHhcCceEEEEE
Q 047896 93 SMQLPLVYPGGRNSSAAFCLPGSLNNIDVKGKVVVCERDGN------------------MRRNETEYYVKEAGGAAMILI 154 (475)
Q Consensus 93 ~~~~~lv~~~~~~~~~~~C~~~~~~~~~v~GkIVl~~rg~~------------------~~~~~k~~~~~~aGa~gvIi~ 154 (475)
....||||.+.+-...+ -.-.++...|++||||++.++.. .....|.+.+.++||+|+|++
T Consensus 21 ~~~~elVFvGyGi~ape-~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 21 LKDSPLVFVGYGIVAPE-YGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred cccCCEEEeccCccCcc-cCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 34678898886521111 01124667899999999997642 012359999999999999999
Q ss_pred ecC
Q 047896 155 SDK 157 (475)
Q Consensus 155 ~~~ 157 (475)
.+.
T Consensus 100 ~~~ 102 (157)
T cd04821 100 HET 102 (157)
T ss_pred eCC
Confidence 763
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.17 E-value=0.098 Score=41.53 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=36.9
Q ss_pred CeEEEEEEEecCCCC-eeEEEEEeCCCCeEEEEEcCeEEEecCCcEEEEEEEEEecCC
Q 047896 391 PQTYNRTIANVGEAN-SSYTHQIVAPEGVEISVQPNEISFTERNQKVTYSITFTRSQK 447 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~-~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 447 (475)
..+++.+|+|.|... ...++++..|.|-.+...|.++.--+.|++++++++|+++..
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 578889999999765 458888889999888888888763345999999999999865
No 75
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=94.78 E-value=0.58 Score=40.14 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=41.4
Q ss_pred CeEEEEEEEecCCCCeeEEEEEeCCCCeEEEEEcCeEEEecCCcEEEEEEEEEecCC
Q 047896 391 PQTYNRTIANVGEANSSYTHQIVAPEGVEISVQPNEISFTERNQKVTYSITFTRSQK 447 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 447 (475)
...++++|.|......+|++++..++|+++......+++.+ |++.++.|.+.++..
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHH
Confidence 56788999999999999999999988999966568899987 999999999999865
No 76
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=1.7 Score=50.81 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCCCCCCC--------CCCCCCCeEEEEe
Q 047896 21 IASAAFTAVRNGIFVSCAAGNKGPDPSS--------STNGAPWILTVGA 61 (475)
Q Consensus 21 ~a~aa~~a~~~GV~vV~AAGN~Gp~~~t--------~~~~ap~visVaA 61 (475)
+..-...|.++||.+++|+|-+|....+ .++..|+|++||-
T Consensus 347 ~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 347 MDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 4445567788999999999999866532 3568899999995
No 77
>COG1470 Predicted membrane protein [Function unknown]
Probab=90.84 E-value=2 Score=45.24 Aligned_cols=71 Identities=25% Similarity=0.253 Sum_probs=58.3
Q ss_pred CeEEEEEEEecCCCCee-EEEEEeCCCCeEEEEEcCeEEEecCCcEEEEEEEEEecCCCCCceEEEEEEEEe
Q 047896 391 PQTYNRTIANVGEANSS-YTHQIVAPEGVEISVQPNEISFTERNQKVTYSITFTRSQKTSASYAQGYLSWVS 461 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~t-y~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 461 (475)
.++....+.|.|+.+-| -++++..|+|-++.|.|..+---++||..++.+|+++|.....+-|+=+|+-++
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 67788889999987754 789999999999999999776556799999999999997644367777777663
No 78
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=90.69 E-value=3.2 Score=35.59 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=47.2
Q ss_pred CCeEEEEEEEecCCCCeeEEEEEeC---CC----CeEEEEEcCeEEEecCCcEEEEEEEEEecCCCCCceEEEEEEEE
Q 047896 390 SPQTYNRTIANVGEANSSYTHQIVA---PE----GVEISVQPNEISFTERNQKVTYSITFTRSQKTSASYAQGYLSWV 460 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~ty~~~~~~---~~----g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 460 (475)
+..+.+++|+|.++....+.+.+.. .. .-.+.++|..+.+.+ |++++++| +.....+.+....=+|.++
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 3467789999999977777777653 11 126789999999998 99999999 6644432223333455555
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=90.43 E-value=2.8 Score=36.42 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=49.4
Q ss_pred CCeEEEEEEEecCCCCeeEEEEEeC----CCC--------------------eEEEEEcCeEEEecCCcEEEEEEEEEec
Q 047896 390 SPQTYNRTIANVGEANSSYTHQIVA----PEG--------------------VEISVQPNEISFTERNQKVTYSITFTRS 445 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~ty~~~~~~----~~g--------------------~~v~v~p~~l~~~~~g~~~~~~vt~~~~ 445 (475)
..++++++|+|.+++..+|.+.+.. ..| --++ .|..+++++ +|+++++++++.|
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl~~-~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTLPP-NESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEECC-CCEEEEEEEEEcC
Confidence 4788999999999999999888641 111 1122 244588887 9999999999998
Q ss_pred CCCCCceEEEEEEEE
Q 047896 446 QKTSASYAQGYLSWV 460 (475)
Q Consensus 446 ~~~~~~~~~G~i~~~ 460 (475)
+..-.+.+-|-|.+.
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 763235666777765
No 80
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=0.081 Score=53.62 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=50.4
Q ss_pred EEeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccccCCCCccccCCC--------CCCCCccccCccccCcc
Q 047896 256 EIADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTADIVNLEGKPIINNYN--------LLPAELFAVGAGHVNPS 327 (475)
Q Consensus 256 ~~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~--------~~~~~~~~~G~G~vn~~ 327 (475)
..-||||.|+|-.||+.||.++++|.++-.+++-+-.-|.+... +-|..+ ....-...+|+|.+|+.
T Consensus 379 ~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrns-----lfd~~~rf~w~mngvglefnhlfgfgvldag 453 (629)
T KOG3526|consen 379 RSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNS-----LFDGRCRFEWQMNGVGLEFNHLFGFGVLDAG 453 (629)
T ss_pred cccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccch-----hhcccceEEEeccccceeeecccccccccHH
Confidence 35799999999999999999999999999998877665654321 111111 11233567899999986
Q ss_pred ccC
Q 047896 328 KAN 330 (475)
Q Consensus 328 ~A~ 330 (475)
+-+
T Consensus 454 amv 456 (629)
T KOG3526|consen 454 AMV 456 (629)
T ss_pred HHH
Confidence 654
No 81
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=83.48 E-value=7.4 Score=32.30 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=40.6
Q ss_pred CeEEEEEEEecCCCCeeEEEEEeCCCCeEEEEEcCeEEEecCCcEEEEEEEEEecC
Q 047896 391 PQTYNRTIANVGEANSSYTHQIVAPEGVEISVQPNEISFTERNQKVTYSITFTRSQ 446 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 446 (475)
..+..++|+|.++...-|++....|..+ .|.|..=.+.+ |++.++.|++....
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i~p-~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGIIEP-GESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE-T-TEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEECC-CCEEEEEEEEEecc
Confidence 4677789999999988899998888765 46799888887 99999999998754
No 82
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=82.08 E-value=5.6 Score=42.27 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=48.5
Q ss_pred CeEEEEEEEecCCCCeeEEEEEeCCCCeEEEEEcCeEEEecCCcEEEEEEEEEecC
Q 047896 391 PQTYNRTIANVGEANSSYTHQIVAPEGVEISVQPNEISFTERNQKVTYSITFTRSQ 446 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 446 (475)
...++..|.|.+..+.+|+++++..++.++...++.+++.+ ||+.++.|.+..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~-g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKA-GEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECC-CCEEEEEEEEEech
Confidence 56788999999999999999999988988887656889988 99999999998874
No 83
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=80.02 E-value=14 Score=32.99 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=48.9
Q ss_pred EEEEEEEecCCCC-eeEEEEEeCCCCeEEEEEcCeEEEecCCcEEEEEEEEEecCCCCCceEEEEEEEE
Q 047896 393 TYNRTIANVGEAN-SSYTHQIVAPEGVEISVQPNEISFTERNQKVTYSITFTRSQKTSASYAQGYLSWV 460 (475)
Q Consensus 393 t~~rtvtN~g~~~-~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 460 (475)
.+..-|-|..+.. .--+++...-...++--.|..+++.| ++.++++.+++...... ++.||+|++.
T Consensus 72 vLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P-~~~~~i~~~iKVsStet-GvIfG~I~Yd 138 (140)
T PF07718_consen 72 VLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAP-HGFARIKATIKVSSTET-GVIFGNIVYD 138 (140)
T ss_pred EEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCC-CcEEEEEEEEEEEeccC-CEEEEEEEEe
Confidence 3444556655532 22445555556788888999999998 99999999999987766 8999999985
No 84
>COG1470 Predicted membrane protein [Function unknown]
Probab=79.84 E-value=29 Score=36.86 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=50.3
Q ss_pred CeEEEEEEEecCCCCeeEEEEEe-CCCCeEEEEEcC-----eEEEecCCcEEEEEEEEEecCCCCCceEEEEEEEEe
Q 047896 391 PQTYNRTIANVGEANSSYTHQIV-APEGVEISVQPN-----EISFTERNQKVTYSITFTRSQKTSASYAQGYLSWVS 461 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~ty~~~~~-~~~g~~v~v~p~-----~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 461 (475)
+..+++++.|.|....+|.++.. .|++....+.-. ++.+.+ ||+++++|.+.++....-+.|.=.|+-.+
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~-gE~kdvtleV~ps~na~pG~Ynv~I~A~s 360 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKP-GEEKDVTLEVYPSLNATPGTYNVTITASS 360 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecC-CCceEEEEEEecCCCCCCCceeEEEEEec
Confidence 56888999999999999999998 787766655433 455666 99999999999885421134443444443
No 85
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=71.19 E-value=13 Score=26.14 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=26.0
Q ss_pred EEEEecCCCCeeEEEEEeCCCCeEEEEEcCeEEEecCCcEEEEEEEE
Q 047896 396 RTIANVGEANSSYTHQIVAPEGVEISVQPNEISFTERNQKVTYSITF 442 (475)
Q Consensus 396 rtvtN~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~ 442 (475)
++++|.|+.....+--...-.=..+ +.+.-.+.| ||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~--~~~~~~i~P-Ges~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTA--EYSKKPIAP-GESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEe--eCCcceECC-CCEEEEEEEC
Confidence 6899999986543222222222333 333345766 9999988874
No 86
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=70.96 E-value=17 Score=28.83 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=30.1
Q ss_pred EEEEEcCeEEEecCCcEEEEEEEEEecCCCCCceEEEEEEEEeCC
Q 047896 419 EISVQPNEISFTERNQKVTYSITFTRSQKTSASYAQGYLSWVSTQ 463 (475)
Q Consensus 419 ~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~ 463 (475)
.+++.|..+++.. |+++.|+++++.... .. ...++|++.+
T Consensus 4 ~i~i~p~~~~l~~-G~~~~l~a~~~~~~~---~~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASVKK-GLTLQLTATVTPSSA---KV-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEEeC-CCeEEEEEEEECCCC---Cc-cceEEEEECC
Confidence 5788999999987 999999998654432 22 5788898643
No 87
>PLN03080 Probable beta-xylosidase; Provisional
Probab=65.13 E-value=24 Score=40.51 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=44.2
Q ss_pred CeEEEEEEEecCCCCeeEEE--EEeCCCC-----eEEEEEcCeEEEecCCcEEEEEEEEEe-cCC----CCCceE--EEE
Q 047896 391 PQTYNRTIANVGEANSSYTH--QIVAPEG-----VEISVQPNEISFTERNQKVTYSITFTR-SQK----TSASYA--QGY 456 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~ty~~--~~~~~~g-----~~v~v~p~~l~~~~~g~~~~~~vt~~~-~~~----~~~~~~--~G~ 456 (475)
..+++++|||+|+-.....+ -+..|.+ .+--+--+++.+.+ ||+++++++++. .+. ..+.|. .|.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~-Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~ 763 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTAS-GRSTETEIVVDPCKHLSVANEEGKRVLPLGD 763 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCC-CCEEEEEEEeCchHHceEEcCCCcEEEeCcc
Confidence 36788999999996543332 2333321 11112223445665 999999888876 433 112232 465
Q ss_pred EEEE--eCCceEEEE
Q 047896 457 LSWV--STQHTVRSP 469 (475)
Q Consensus 457 i~~~--~~~~~vr~P 469 (475)
..+. +..|+|+++
T Consensus 764 y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 764 HVLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEEeCCccceEEe
Confidence 5554 456777765
No 88
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=62.57 E-value=54 Score=31.90 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=38.4
Q ss_pred CeEEEEEEEecCCCCeeEEEEEe---CC-------------CCeEEEEEcCeEEEecCCcEEEEEEEEEec
Q 047896 391 PQTYNRTIANVGEANSSYTHQIV---AP-------------EGVEISVQPNEISFTERNQKVTYSITFTRS 445 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~ty~~~~~---~~-------------~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~ 445 (475)
.....++|.|.|+...-+++.+. .| ..-.+-++|..|.+.+ |+++.|+|.-..+
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~p-g~~q~IRli~lg~ 101 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPA-GTTRTVRVISLQA 101 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECC-CCeEEEEEEEcCC
Confidence 44556889999998776666653 11 1126888999999988 9999988755443
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=62.25 E-value=38 Score=27.12 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCeEEEEEEEecCCCC-eeEEEEEeCCCCeEEEEEcCeE-EEecCCcEEEEEEEEEec
Q 047896 390 SPQTYNRTIANVGEAN-SSYTHQIVAPEGVEISVQPNEI-SFTERNQKVTYSITFTRS 445 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~-~ty~~~~~~~~g~~v~v~p~~l-~~~~~g~~~~~~vt~~~~ 445 (475)
...+++.+|+|.|... ..+.+.+... |..+ .-..+ .|.+ |+++++++++..+
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L~~-g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSLAP-GESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB-T-TEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCcCC-CcEEEEEEEEEeC
Confidence 4678889999999975 4466666432 3222 11122 5666 9999988888887
No 90
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=58.11 E-value=25 Score=40.19 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=33.3
Q ss_pred CeEEEEEEEecCCCCee--EEEEEeCCCCe------EEEEEcCeEEEecCCcEEEEEEEEEecCC
Q 047896 391 PQTYNRTIANVGEANSS--YTHQIVAPEGV------EISVQPNEISFTERNQKVTYSITFTRSQK 447 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~t--y~~~~~~~~g~------~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 447 (475)
..+++++|+|+|+-... -.+-+..|.+. .+. --+++.+.+ ||+++++++++..+.
T Consensus 668 ~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~-gF~Kv~L~p-Ges~~V~~~l~~~~L 730 (765)
T PRK15098 668 KVTASVTVTNTGKREGATVVQLYLQDVTASMSRPVKELK-GFEKIMLKP-GETQTVSFPIDIEAL 730 (765)
T ss_pred eEEEEEEEEECCCCCccEEEEEeccCCCCCCCCHHHhcc-CceeEeECC-CCeEEEEEeecHHHh
Confidence 46788999999995432 22223334321 111 112345666 999999988887654
No 91
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=54.75 E-value=84 Score=26.04 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCeEEEEEEEecCCCC-eeEEEE-----EeCCCCe---EEEEEcCeEEEecCCcEEEEEEEEEecCC
Q 047896 390 SPQTYNRTIANVGEAN-SSYTHQ-----IVAPEGV---EISVQPNEISFTERNQKVTYSITFTRSQK 447 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~-~ty~~~-----~~~~~g~---~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 447 (475)
...++..+++|..+.. .+-++. +.. .|+ ........+++.| |++.++++++.+..-
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l~p-~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTLKP-GETKSVEVTITPSQY 79 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE-T-TEEEEEEEEE-HHSH
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceeeCC-CCEEEEEEEEEceeE
Confidence 3678889999998876 442222 232 454 3566666778888 999999999987653
No 92
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=51.55 E-value=59 Score=26.07 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=13.3
Q ss_pred CeEEEecCCcEEEEEEEEEecCC
Q 047896 425 NEISFTERNQKVTYSITFTRSQK 447 (475)
Q Consensus 425 ~~l~~~~~g~~~~~~vt~~~~~~ 447 (475)
...++.| ||+++|+.+++....
T Consensus 52 ~~~~l~p-Ge~~~~~~~~~~~~~ 73 (82)
T PF12690_consen 52 QEETLEP-GESLTYEETWDLKDL 73 (82)
T ss_dssp EEEEE-T-T-EEEEEEEESS---
T ss_pred eEEEECC-CCEEEEEEEECCCCC
Confidence 3456777 999999988877654
No 93
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=50.03 E-value=1.3e+02 Score=24.07 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCeEEEEEEEecCCCCeeEEEEEeC-CCCeEEEEEcCeEEEecCCcEEEEEEEE
Q 047896 390 SPQTYNRTIANVGEANSSYTHQIVA-PEGVEISVQPNEISFTERNQKVTYSITF 442 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~ty~~~~~~-~~g~~v~v~p~~l~~~~~g~~~~~~vt~ 442 (475)
....+.++++|.|....++++.-.. ..+ .|.++++.+ |+++++...+
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~y~~~-----~~~~~~v~a-g~~~~~~w~l 65 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNAYGGG-----GPWTYTVAA-GQTVSLTWPL 65 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCCcCCC-----CCEEEEECC-CCEEEEEEee
Confidence 3458889999999888877776522 212 245567777 8887766654
No 94
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=44.76 E-value=21 Score=40.25 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=34.8
Q ss_pred CccccceEEEEecCCCCchhhhhHHHHhcCceEEEEEecC
Q 047896 118 NIDVKGKVVVCERDGNMRRNETEYYVKEAGGAAMILISDK 157 (475)
Q Consensus 118 ~~~v~GkIVl~~rg~~~~~~~k~~~~~~aGa~gvIi~~~~ 157 (475)
.-+++|||+|.+.+. ..+..|.+++.++|+.|+|+|.+.
T Consensus 180 ~i~~~g~i~l~r~~~-i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 180 GINLSGKIVLARVGK-IYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred cccccCceEEEEccc-cchhhhHhhHHHhhcCcEEEeecc
Confidence 445889999999997 889999999999999999999864
No 95
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=41.61 E-value=15 Score=38.93 Aligned_cols=74 Identities=23% Similarity=0.085 Sum_probs=52.1
Q ss_pred EeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccccCCCCccccCCCCCCCCccccCccccCccccCC
Q 047896 257 IADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSAIMTTADIVNLEGKPIINNYNLLPAELFAVGAGHVNPSKAND 331 (475)
Q Consensus 257 ~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 331 (475)
--.|||-++|..||+.+|.++++|.++-.++..+...++.........-+... ....-...+|.|++|..+-+.
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~-~g~~~~h~~g~~~~~~~~~~~ 324 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNG-AGGLVSHLYGFGLLDAKALVS 324 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEec-CCceeeeeecccccCcchhhh
Confidence 45799999999999999999999999888887777777765432222211111 112234478999999876654
No 96
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=36.04 E-value=1.6e+02 Score=29.44 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=14.6
Q ss_pred CeEEEEEEEecCCCCeeEEEEEeCC
Q 047896 391 PQTYNRTIANVGEANSSYTHQIVAP 415 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~ty~~~~~~~ 415 (475)
...++.||+|..+...+-++..+.|
T Consensus 243 ~~~~~itv~N~~~~~v~v~v~d~iP 267 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVTVTVEDQIP 267 (317)
T ss_pred EEEEEEEEECCCCCCEEEEEEeCCC
Confidence 3556677888776655444444433
No 97
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=35.03 E-value=3.8e+02 Score=25.78 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=37.1
Q ss_pred CCeEEEEEEEecCCCCeeEEEE--EeCC---CCeEEEEEcCeEEEecCCcEEEEEEEEEe
Q 047896 390 SPQTYNRTIANVGEANSSYTHQ--IVAP---EGVEISVQPNEISFTERNQKVTYSITFTR 444 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~ty~~~--~~~~---~g~~v~v~p~~l~~~~~g~~~~~~vt~~~ 444 (475)
+....+++|+|.++.+ |.+. ++.. ....+-|+|..+.+.+ |+++.++|....
T Consensus 38 ~~~~~si~v~N~~~~p--~lvQ~wv~~~~~~~~~~fivtPPl~rl~p-g~~q~vRii~~~ 94 (230)
T PRK09918 38 SDGEGSINVKNTDSNP--ILLYTTLVDLPEDKSKLLLVTPPVARVEP-GQSQQVRFILKS 94 (230)
T ss_pred CCCeEEEEEEcCCCCc--EEEEEEEecCCCCCCCCEEEcCCeEEECC-CCceEEEEEECC
Confidence 4567778999988753 4443 2221 2246889999999998 999999887653
No 98
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=34.30 E-value=19 Score=16.12 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=4.3
Q ss_pred cccCCC
Q 047896 212 SLSARG 217 (475)
Q Consensus 212 ~fSs~G 217 (475)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 99
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=33.11 E-value=38 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=18.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhcc
Q 047896 272 AALLKSTHPDWSPAAIKSAIMTTA 295 (475)
Q Consensus 272 aALl~~~~p~~s~~~ik~~L~~tA 295 (475)
.--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999996543
No 100
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=31.40 E-value=3.5e+02 Score=31.70 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=30.0
Q ss_pred eEEEEEEEecC-CCCeeEEEEEe-----CCCCeEEEEEcCeEEEecCCcE-EEEEEEE
Q 047896 392 QTYNRTIANVG-EANSSYTHQIV-----APEGVEISVQPNEISFTERNQK-VTYSITF 442 (475)
Q Consensus 392 ~t~~rtvtN~g-~~~~ty~~~~~-----~~~g~~v~v~p~~l~~~~~g~~-~~~~vt~ 442 (475)
.+++.+|+-.| +...+-++... +..|.+.....-+|+|.+ ||+ ++++|.+
T Consensus 416 GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~P-GEt~KtItV~I 472 (928)
T TIGR00845 416 GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVFKP-GETQKEFRIGI 472 (928)
T ss_pred cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEECC-CceEEEEEEEE
Confidence 45666665544 43333344433 345677777788999998 776 4555544
No 101
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=30.20 E-value=1.2e+02 Score=25.37 Aligned_cols=50 Identities=12% Similarity=0.272 Sum_probs=28.1
Q ss_pred CCeEEEEEEEecCCCCe----eEEEEEe---------CCCCeEEEE-EcCeEEEecCCcEEEEEE
Q 047896 390 SPQTYNRTIANVGEANS----SYTHQIV---------APEGVEISV-QPNEISFTERNQKVTYSI 440 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~----ty~~~~~---------~~~g~~v~v-~p~~l~~~~~g~~~~~~v 440 (475)
+..+.+++|+|.|+-+. -|+.--. ..-|..+-+ .-+.+.|.| |+++++++
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEP-G~~k~V~L 81 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEP-GEEKEVEL 81 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECC-CCeEEEEE
Confidence 35677899999999652 2332111 112333333 223445666 99998765
No 102
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=30.12 E-value=1.2e+02 Score=31.48 Aligned_cols=49 Identities=22% Similarity=0.385 Sum_probs=26.8
Q ss_pred CeEEEEEEEecCCCCee---E-EEEEe--C----------C------CCeEEEEEcCeEEEecCCcEEEEEEEEE
Q 047896 391 PQTYNRTIANVGEANSS---Y-THQIV--A----------P------EGVEISVQPNEISFTERNQKVTYSITFT 443 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~t---y-~~~~~--~----------~------~g~~v~v~p~~l~~~~~g~~~~~~vt~~ 443 (475)
+.+++.+|||.|++... | ++.++ . | .| ++|+|++ -+.| ||+++++|+++
T Consensus 264 ~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~-pI~P-GETrtl~V~a~ 334 (381)
T PF04744_consen 264 TLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNS-PIAP-GETRTLTVEAQ 334 (381)
T ss_dssp EEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B-T-T-EEEEEEEEE
T ss_pred EEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCC-CcCC-CceEEEEEEee
Confidence 67888999999997632 2 11222 1 1 23 4555654 3666 99999988775
No 103
>PRK13203 ureB urease subunit beta; Reviewed
Probab=29.46 E-value=1.3e+02 Score=25.35 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=27.8
Q ss_pred CCeEEEEEEEecCCCCee----EEEEEe---------CCCCeEEEE-EcCeEEEecCCcEEEEEE
Q 047896 390 SPQTYNRTIANVGEANSS----YTHQIV---------APEGVEISV-QPNEISFTERNQKVTYSI 440 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~t----y~~~~~---------~~~g~~v~v-~p~~l~~~~~g~~~~~~v 440 (475)
+..+.+++|+|.|+-+.. |+.--. ..-|..+-+ .-+.+.|.| |+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEP-G~~k~V~L 81 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEP-GQTREVEL 81 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECC-CCeEEEEE
Confidence 356778999999996532 332111 112333322 223345666 99998765
No 104
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=29.19 E-value=1.4e+02 Score=25.10 Aligned_cols=49 Identities=12% Similarity=0.272 Sum_probs=27.5
Q ss_pred CeEEEEEEEecCCCCe----eEEEEEe---------CCCCeEEEE-EcCeEEEecCCcEEEEEE
Q 047896 391 PQTYNRTIANVGEANS----SYTHQIV---------APEGVEISV-QPNEISFTERNQKVTYSI 440 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~----ty~~~~~---------~~~g~~v~v-~p~~l~~~~~g~~~~~~v 440 (475)
..+.+++|+|.|+.+. -|+.--. ..-|..+-+ .-+.+.|.| |+++++++
T Consensus 19 r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEP-G~~k~V~L 81 (101)
T TIGR00192 19 RKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEP-GEEKSVEL 81 (101)
T ss_pred CcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECC-CCeEEEEE
Confidence 4677889999999652 2332111 112333332 223445666 99998765
No 105
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=26.11 E-value=4.6e+02 Score=25.69 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=38.0
Q ss_pred CCeEEEEEEEecCCCCeeEEEEE--eCC---CCeEEEEEcCeEEEecCCcEEEEEEEEEecCC
Q 047896 390 SPQTYNRTIANVGEANSSYTHQI--VAP---EGVEISVQPNEISFTERNQKVTYSITFTRSQK 447 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~ty~~~~--~~~---~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 447 (475)
+....+++|+|.++. .|-+.. ... ....+.|+|..+.+.+ ++.++++|.......
T Consensus 54 ~~~~~sl~i~N~~~~--p~LvQsWvd~~~~~~~~pFiVtPPLfRLep-~~~~~lRIi~~~~~L 113 (246)
T PRK15233 54 DAPSTSFWIMNEKEY--PILVQTQVYNDDKSSKAPFIVTPPILKVES-NARTRLKVIPTSNLF 113 (246)
T ss_pred CCcEEEEEEEcCCCC--cEEEEEEEecCCCCccCCEEECCCeEEECC-CCceEEEEEECCCCC
Confidence 356788899997654 354433 211 2245889999999998 999999988764433
No 106
>PRK15019 CsdA-binding activator; Provisional
Probab=25.90 E-value=61 Score=29.18 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=25.1
Q ss_pred CCccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 047896 260 GTSMSCPHLSGIAALLKSTHPDWSPAAIKS 289 (475)
Q Consensus 260 GTSmA~P~vAG~aALl~~~~p~~s~~~ik~ 289 (475)
|.| =++.|-|++|||.+.+-+.+|++|.+
T Consensus 81 ~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 81 GDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred eeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344 37999999999999999999999975
No 107
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=25.01 E-value=3.8e+02 Score=21.83 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=31.3
Q ss_pred CCCeEEEEEEEecCCCC--eeEEEEEeCCCCeEEEEE---cCeEEEecCCcEEEEEEEEEecC
Q 047896 389 SSPQTYNRTIANVGEAN--SSYTHQIVAPEGVEISVQ---PNEISFTERNQKVTYSITFTRSQ 446 (475)
Q Consensus 389 ~~~~t~~rtvtN~g~~~--~ty~~~~~~~~g~~v~v~---p~~l~~~~~g~~~~~~vt~~~~~ 446 (475)
.+..+.+.+|+|..+.+ ..|++..--.+|+.+.-. ...+.+.+ +++.+ |+..++.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~-~~~~~--l~~~ap~ 82 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPG-GQTVT--LSAVAPN 82 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-T-T-EEE--EEEE-SS
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcC-CCEEE--EEEECCC
Confidence 44577888999999876 458888888899876532 12677766 66655 4444443
No 108
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=24.87 E-value=2.7e+02 Score=20.10 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=23.5
Q ss_pred CCeEEEEEEEecCCCCee-EEEEEeCCCCeEEEEEcCeEEE
Q 047896 390 SPQTYNRTIANVGEANSS-YTHQIVAPEGVEISVQPNEISF 429 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~t-y~~~~~~~~g~~v~v~p~~l~~ 429 (475)
+..+++.+++|.|....+ ..+.-..|.|+.. .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 367889999999987543 3344445666443 3444443
No 109
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=24.65 E-value=67 Score=28.56 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=26.1
Q ss_pred eCCCccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 047896 258 ADGTSMSCPHLSGIAALLKSTHPDWSPAAIKS 289 (475)
Q Consensus 258 ~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~ 289 (475)
+.|.| =++.|-|++|||.+.+-+.+|++|.+
T Consensus 74 f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 74 FYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 44555 37999999999999999999999864
No 110
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=24.30 E-value=4.6e+02 Score=22.50 Aligned_cols=80 Identities=11% Similarity=0.198 Sum_probs=44.7
Q ss_pred CCeEEEEEEEecCCCCee---E-EEEEeCCCCe----EEEE---EcCeEEEecCCcEEEEEEEEEecCCCCC--ceEEEE
Q 047896 390 SPQTYNRTIANVGEANSS---Y-THQIVAPEGV----EISV---QPNEISFTERNQKVTYSITFTRSQKTSA--SYAQGY 456 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~t---y-~~~~~~~~g~----~v~v---~p~~l~~~~~g~~~~~~vt~~~~~~~~~--~~~~G~ 456 (475)
+...+.+++||.|+..=+ | .+......|. .+.- .+..+++.+ |++..+.|+......... ......
T Consensus 18 g~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~P-G~sA~a~l~~~~~~~~~~~~~~~~~~ 96 (131)
T PF14016_consen 18 GQRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAP-GGSAYAGLRWSNVGSGGGCKPVTPAG 96 (131)
T ss_pred CccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECC-CCEEEEEEEEecCCCCCCcCccccCE
Confidence 356788899998886311 1 1111111221 1111 456788887 999999999988654321 222333
Q ss_pred EEEE--eCCceEEEEE
Q 047896 457 LSWV--STQHTVRSPI 470 (475)
Q Consensus 457 i~~~--~~~~~vr~P~ 470 (475)
|.+. ++...+++|+
T Consensus 97 l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 97 LTVTPPGGTAPVTVPW 112 (131)
T ss_pred EEEECCCCCccEEEeC
Confidence 4444 4556666654
No 111
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=24.24 E-value=1.1e+02 Score=24.09 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=20.4
Q ss_pred EEEecCCCCchhhhhHHHHhcCceEEEEEe
Q 047896 126 VVCERDGNMRRNETEYYVKEAGGAAMILIS 155 (475)
Q Consensus 126 Vl~~rg~~~~~~~k~~~~~~aGa~gvIi~~ 155 (475)
++|++ ..+.+.+..++++||.+++++.
T Consensus 45 ~vV~~---~~~~~~~~~Lk~~GA~~Ilv~p 71 (75)
T PF08029_consen 45 AVVPE---KQVWDLMDKLKAAGASDILVLP 71 (75)
T ss_dssp EEEEC---CCHHHHHHHHHCTT-EEEEEEE
T ss_pred EEecH---HHHHHHHHHHHHcCCCEEEEEe
Confidence 34555 3478888999999999999876
No 112
>PRK13202 ureB urease subunit beta; Reviewed
Probab=23.83 E-value=2e+02 Score=24.27 Aligned_cols=48 Identities=10% Similarity=0.200 Sum_probs=26.9
Q ss_pred eEEEEEEEecCCCCe----eEEEEEe---------CCCCeEEEE-EcCeEEEecCCcEEEEEE
Q 047896 392 QTYNRTIANVGEANS----SYTHQIV---------APEGVEISV-QPNEISFTERNQKVTYSI 440 (475)
Q Consensus 392 ~t~~rtvtN~g~~~~----ty~~~~~---------~~~g~~v~v-~p~~l~~~~~g~~~~~~v 440 (475)
.+.+.+|+|.|+.+. -|+.--. ..-|..+-+ .-+.+.|.| |+++++++
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEP-G~~k~V~L 82 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEP-GIPQIVGL 82 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECC-CCeEEEEE
Confidence 577899999999652 2432111 112333332 223345666 99998765
No 113
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=23.71 E-value=6.2e+02 Score=24.41 Aligned_cols=56 Identities=9% Similarity=0.184 Sum_probs=37.4
Q ss_pred CCeEEEEEEEecCCCCeeEEE--EEeCCC---CeEEEEEcCeEEEecCCcEEEEEEEEEecCC
Q 047896 390 SPQTYNRTIANVGEANSSYTH--QIVAPE---GVEISVQPNEISFTERNQKVTYSITFTRSQK 447 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~ty~~--~~~~~~---g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 447 (475)
+....+++|+|.++.. .|-+ -++..+ ...+.++|..+.+.+ |+.+.++|.......
T Consensus 41 ~~~~~sv~i~N~~~~~-p~LvQsWv~~~~~~~~~pFivtPPlfrl~~-~~~~~lRI~~~~~~l 101 (228)
T PRK15188 41 GSKQTSLPIINSSASN-VFLIQSWVANADGSRSTDFIITPPLFVIQP-KKENILRIMYVGPSL 101 (228)
T ss_pred CCceEEEEEEeCCCCc-cEEEEEEEecCCCCccCCEEEcCCeEEECC-CCceEEEEEECCCCC
Confidence 4567788999988542 2322 222222 135889999999998 999999987764433
No 114
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=23.68 E-value=6.8e+02 Score=24.29 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=37.2
Q ss_pred CCeEEEEEEEecCCCCeeEEEEE--eC------CCC--eEEEEEcCeEEEecCCcEEEEEEEEEec
Q 047896 390 SPQTYNRTIANVGEANSSYTHQI--VA------PEG--VEISVQPNEISFTERNQKVTYSITFTRS 445 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~ty~~~~--~~------~~g--~~v~v~p~~l~~~~~g~~~~~~vt~~~~ 445 (475)
+....+++|+|.++.+ |-+.. +. |.. ..+-|+|.-+.+.+ |+.+.++|.....
T Consensus 39 ~~~~~sv~l~N~~~~p--~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p-~~~q~lRIi~~~~ 101 (246)
T PRK09926 39 DQKDVNVRLENKGNNP--LLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDP-KRGQTIKLMYTAS 101 (246)
T ss_pred CCceEEEEEEeCCCCc--EEEEEEecCCCCccCccccCCCEEEcCCeEEECC-CCccEEEEEeCCC
Confidence 4567778999988763 43322 21 111 24789999999998 9999999876554
No 115
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=23.66 E-value=39 Score=26.43 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=27.3
Q ss_pred EEEEEcCeEEEecCCcEEEEEEEEEecCCCCCceEEEEEEEEe
Q 047896 419 EISVQPNEISFTERNQKVTYSITFTRSQKTSASYAQGYLSWVS 461 (475)
Q Consensus 419 ~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 461 (475)
++++.|..+.+.. |++..|++++...+... ..++|.+
T Consensus 4 ~I~i~~~~~~l~~-G~~~~l~~~~~~~~~~~-----~~v~w~s 40 (79)
T PF02368_consen 4 SITITPTSVTLKV-GQTQQLTATVTPSDGSN-----SKVTWSS 40 (79)
T ss_dssp SEEETTTEEECET-TCEETTEEEEEEEESTT-----SCEEEEE
T ss_pred EEEEECCEEEEEC-CCEEEEEEEEEECCCcE-----eEEEEEe
Confidence 4678888888877 99998888888776543 4456663
No 116
>PRK13205 ureB urease subunit beta; Reviewed
Probab=23.38 E-value=1.8e+02 Score=26.28 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=28.2
Q ss_pred CCeEEEEEEEecCCCCe----eEEEEEe---------CCCCeEEEE-EcCeEEEecCCcEEEEEE
Q 047896 390 SPQTYNRTIANVGEANS----SYTHQIV---------APEGVEISV-QPNEISFTERNQKVTYSI 440 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~----ty~~~~~---------~~~g~~v~v-~p~~l~~~~~g~~~~~~v 440 (475)
+..+++++|+|.|+-+. -|+.--. ..-|..+-+ .-+.+.|.| |+++++++
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEP-Ge~ktV~L 81 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEP-GDARTVNL 81 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECC-CCeEEEEE
Confidence 35678899999999653 2432211 112333332 223445666 99998766
No 117
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.31 E-value=5.4e+02 Score=23.87 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=35.3
Q ss_pred CCeEEEEEEEecCCCCeeEEEEEeC---C-CCeEEEEEcCeE---EEecCCcEEEEEEEEEecCC
Q 047896 390 SPQTYNRTIANVGEANSSYTHQIVA---P-EGVEISVQPNEI---SFTERNQKVTYSITFTRSQK 447 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~ty~~~~~~---~-~g~~v~v~p~~l---~~~~~g~~~~~~vt~~~~~~ 447 (475)
...+++.+|.|.|+.. -|.+++.. | +.+++.---.+. ++++ |+..+..+++++...
T Consensus 38 ~~v~V~~~iyN~G~~~-A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~p-g~~vsh~~vv~p~~~ 100 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSA-AYDVKLTDDSFPPEDFELVSGSLSASWERIPP-GENVSHSYVVRPKKS 100 (181)
T ss_pred cEEEEEEEEEECCCCe-EEEEEEECCCCCccccEeccCceEEEEEEECC-CCeEEEEEEEeeeee
Confidence 3678999999999973 47777754 2 333331110111 3445 999998888887643
No 118
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=22.73 E-value=1.8e+02 Score=22.26 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=20.3
Q ss_pred CCeEEEEEEEecCCCCee-EEEEEeCCCCeEE
Q 047896 390 SPQTYNRTIANVGEANSS-YTHQIVAPEGVEI 420 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~t-y~~~~~~~~g~~v 420 (475)
+..+++++|+|.|..... .++.-..|.|+.+
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 368899999999987533 3444344666443
No 119
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=22.47 E-value=6.9e+02 Score=23.91 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCeEEEEEEEecCCCCeeEEEEE--eC------CCCeEEEEEcCeEEEecCCcEEEEEEEEEec
Q 047896 390 SPQTYNRTIANVGEANSSYTHQI--VA------PEGVEISVQPNEISFTERNQKVTYSITFTRS 445 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~ty~~~~--~~------~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~ 445 (475)
+....+++|+|.++. .|-+.. +. .....+-++|..+.+.+ |+++.++|.....
T Consensus 36 ~~~~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p-~~~q~lRI~~~~~ 96 (227)
T PRK15299 36 DAKDASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNG-GQKNVLRIIRTGG 96 (227)
T ss_pred CCcEEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECC-CCccEEEEEECCC
Confidence 356778899998775 343332 11 11245889999999998 9999999876543
No 120
>PRK13201 ureB urease subunit beta; Reviewed
Probab=22.35 E-value=2e+02 Score=25.38 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=27.3
Q ss_pred CeEEEEEEEecCCCCe----eEEEEEe---------CCCCeEEEE-EcCeEEEecCCcEEEEEE
Q 047896 391 PQTYNRTIANVGEANS----SYTHQIV---------APEGVEISV-QPNEISFTERNQKVTYSI 440 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~----ty~~~~~---------~~~g~~v~v-~p~~l~~~~~g~~~~~~v 440 (475)
..+.+++|+|.|+-+. -|+.--. ..-|..+-+ .-+.+.|.| |+++++++
T Consensus 19 r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEP-G~~k~V~L 81 (136)
T PRK13201 19 HPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEP-GDKKEVQL 81 (136)
T ss_pred CCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECC-CCeEEEEE
Confidence 5677899999999652 2332111 112333322 223345666 99998766
No 121
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=22.12 E-value=66 Score=23.66 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=25.6
Q ss_pred cceEEeCCCccchHHHHHHHH------HHHhcCCCCCHHHHHHHHH
Q 047896 253 ATFEIADGTSMSCPHLSGIAA------LLKSTHPDWSPAAIKSAIM 292 (475)
Q Consensus 253 ~~y~~~sGTSmA~P~vAG~aA------Ll~~~~p~~s~~~ik~~L~ 292 (475)
++--.+.||-+..=.+....+ -+.+.||.++.++|+++|.
T Consensus 9 ~G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 9 GGQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp GG--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CCcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 455678888888776666542 2456789999999999884
No 122
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=21.96 E-value=81 Score=28.04 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.1
Q ss_pred CCccchHHHHHHHHHHHhcCCCCCHHHHHH
Q 047896 260 GTSMSCPHLSGIAALLKSTHPDWSPAAIKS 289 (475)
Q Consensus 260 GTSmA~P~vAG~aALl~~~~p~~s~~~ik~ 289 (475)
|-| =++.|-|++|||.+.+-..+|++|.+
T Consensus 71 ~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 71 GDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred Eec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 444 48999999999999999999999864
No 123
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=21.54 E-value=4.3e+02 Score=21.13 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=27.3
Q ss_pred EEEEEEEecCCCCeeEEEEEe-----CCCCeEEEEEcCeEEEecCCcE-EEEEEEE
Q 047896 393 TYNRTIANVGEANSSYTHQIV-----APEGVEISVQPNEISFTERNQK-VTYSITF 442 (475)
Q Consensus 393 t~~rtvtN~g~~~~ty~~~~~-----~~~g~~v~v~p~~l~~~~~g~~-~~~~vt~ 442 (475)
+++++|.-.|......++.+. +..|........+|+|.+ ||+ ++++|.+
T Consensus 19 ~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~-ge~~k~i~i~i 73 (90)
T smart00237 19 EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPP-GETEKCIRIKI 73 (90)
T ss_pred EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECC-CCEEEEEEEEE
Confidence 455666555554434444433 335556666678889988 763 4444433
No 124
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=21.46 E-value=1.2e+02 Score=25.38 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=11.6
Q ss_pred CCeEEEEEEEecCCCC
Q 047896 390 SPQTYNRTIANVGEAN 405 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~ 405 (475)
+..+.+++|+|.|+-+
T Consensus 17 gr~~~~l~V~N~GDRP 32 (100)
T PF00699_consen 17 GRERITLEVTNTGDRP 32 (100)
T ss_dssp TSEEEEEEEEE-SSS-
T ss_pred CCcEEEEEEEeCCCcc
Confidence 3578889999999965
No 125
>PRK13204 ureB urease subunit beta; Reviewed
Probab=20.83 E-value=2.1e+02 Score=25.90 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=28.1
Q ss_pred CCeEEEEEEEecCCCCe----eEEEEEe---------CCCCeEEEE-EcCeEEEecCCcEEEEEE
Q 047896 390 SPQTYNRTIANVGEANS----SYTHQIV---------APEGVEISV-QPNEISFTERNQKVTYSI 440 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~~----ty~~~~~---------~~~g~~v~v-~p~~l~~~~~g~~~~~~v 440 (475)
+..+++++|+|.|+-+. -|+.--. ..-|..+-+ .-+.+.|.| |+++++++
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEP-G~~k~V~L 104 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEP-GDEKEVTL 104 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECC-CCeeEEEE
Confidence 35678899999999652 2332111 112333333 223445666 99998766
No 126
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=20.81 E-value=2.5e+02 Score=23.57 Aligned_cols=49 Identities=12% Similarity=0.268 Sum_probs=26.4
Q ss_pred CeEEEEEEEecCCCCe----eEEEE-Ee--------CCCCeEEEE-EcCeEEEecCCcEEEEEE
Q 047896 391 PQTYNRTIANVGEANS----SYTHQ-IV--------APEGVEISV-QPNEISFTERNQKVTYSI 440 (475)
Q Consensus 391 ~~t~~rtvtN~g~~~~----ty~~~-~~--------~~~g~~v~v-~p~~l~~~~~g~~~~~~v 440 (475)
..+.+.+|.|+|+.+. -|+.- +. ..-|..+-+ +-+.+.|.| |+.+++++
T Consensus 19 r~~~~i~V~NtGDRPIQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEP-G~~k~V~L 81 (106)
T COG0832 19 RPTVTIEVANTGDRPIQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEP-GDEKEVEL 81 (106)
T ss_pred CcceEEEEeecCCCceEeecceeehhhCcceeechhhhcceEecccCCceEeeCC-CCccEEEE
Confidence 4566678999999652 24321 11 112333333 223345666 88888655
No 127
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=20.37 E-value=4.1e+02 Score=21.81 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=36.9
Q ss_pred CCeEEEEEEEecCCCC--eeEEEEEeCCCCeEEEEE---cCeEEEecCCcEEEEEEEEEecC
Q 047896 390 SPQTYNRTIANVGEAN--SSYTHQIVAPEGVEISVQ---PNEISFTERNQKVTYSITFTRSQ 446 (475)
Q Consensus 390 ~~~t~~rtvtN~g~~~--~ty~~~~~~~~g~~v~v~---p~~l~~~~~g~~~~~~vt~~~~~ 446 (475)
+..++..+|+|..+.+ ..|++..--.+|+.+.-. ...+.+.+ +++.+ |+..++.
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~l~l~~-~~~~~--l~~~ap~ 90 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPG-GQTVT--LQAVAPN 90 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCCEEEEECC-CCeEE--EEEEcCC
Confidence 3567788999998765 458888888888877654 44566766 65555 4555544
No 128
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.09 E-value=98 Score=26.92 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=25.5
Q ss_pred EeCCCccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 047896 257 IADGTSMSCPHLSGIAALLKSTHPDWSPAAIKSA 290 (475)
Q Consensus 257 ~~sGTSmA~P~vAG~aALl~~~~p~~s~~~ik~~ 290 (475)
.+.|.|= ++.+-|++|||.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 3344444 67999999999999999999998654
Done!