BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047897
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 211 bits (536), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 140/209 (66%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
GQHIL N +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D R+V L
Sbjct: 7 GQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAEL 66
Query: 69 NRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLL 128
++R + +L V+ D LKT+ P FD VAN+PY ISSP V KL+ FR A L+
Sbjct: 67 HKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILM 126
Query: 129 LQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAE 188
Q+EFA RL+A PGD + RL++N +L+A V+ +M V K +F P PKV+SSVV I PK
Sbjct: 127 FQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNP 186
Query: 189 IPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
P +N EW R F +KNKTL A FK
Sbjct: 187 PPPINFQEWDGLVRITFVRKNKTLSAAFK 215
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 201 bits (510), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 138/211 (65%), Gaps = 1/211 (0%)
Query: 8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
+GQH+L N +LD I+ + I D VLEIG GTGNLT+KLL ++KKV I+ID RM+
Sbjct: 20 QGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISE 79
Query: 68 LNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATL 127
+ +R G+++ L V DA+KT FP+FD+ ANIPY ISSPL+ KL+ F+ A L
Sbjct: 80 VKKRCLYEGYNN-LEVYEGDAIKTVFPKFDVCTANIPYKISSPLIFKLISHRPLFKCAVL 138
Query: 128 LLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKA 187
+ QKEFA R+LA+ GDS ++RL +NVKL V V +V++ F P PKVDS +V + PK
Sbjct: 139 MFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKLIPKE 198
Query: 188 EIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
N DEW R CFS+K KTL A FK+
Sbjct: 199 SSFLTNFDEWDNLLRICFSRKRKTLHAIFKR 229
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 8/210 (3%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
K GQ L ++ ++ V +++ DD VLEIG G G LT +L + +KKV+ IEID+ +
Sbjct: 26 KKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLE 85
Query: 66 EILNRRAADSGFHDRLNVISKDALKTEFPQFDL--VVANIPYGISSPLVAKLVYGTKSFR 123
N+ ++ + +I DALK + + D VVAN+PY ISSP+ KL+ + F
Sbjct: 86 PYANKLKE---LYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--KRGFD 140
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
A L+ Q EFA+R++A+ G ++ RL+V V+ ADVE V V F P PKV S++V I
Sbjct: 141 LAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKI 200
Query: 184 RP-KAEIPDVNLDEWRAFTRTCFSKKNKTL 212
+P K + N + + F R F +NK++
Sbjct: 201 KPNKGKYHIENENFFDDFLRAIFQHRNKSV 230
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 119/206 (57%), Gaps = 8/206 (3%)
Query: 10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
Q L ++ ++ V +++ DD VLEIG G G LT +L + +KKV+ IEID+ + N
Sbjct: 1 QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYAN 60
Query: 70 RRAADSGFHDRLNVISKDALKTEFPQFDL--VVANIPYGISSPLVAKLVYGTKSFRSATL 127
+ ++ + +I DALK + + D VVAN+PY ISSP+ KL+ + F A L
Sbjct: 61 KLKE---LYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--KRGFDLAVL 115
Query: 128 LLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRP-K 186
+ Q EFA+R++A+ G ++ RL+V V+ ADVE V V F P PKV S++V I+P K
Sbjct: 116 MYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNK 175
Query: 187 AEIPDVNLDEWRAFTRTCFSKKNKTL 212
+ N + + F R F +NK++
Sbjct: 176 GKYHIENENFFDDFLRAIFQHRNKSV 201
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 12/209 (5%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
Q L ++ ++ V +++ DD VLEIG G G LT +L + +KKV+ IEID+ +
Sbjct: 2 AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYA 61
Query: 69 NRRAADSGFHDRLNVISKDALKTEFPQFDL--VVANIPYGISSPLVAKLVYGTKSFRSAT 126
N+ ++ + +I DALK + + D VVAN+PY ISSP+ KL+ + F A
Sbjct: 62 NKLKE---LYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--KRGFDLAV 116
Query: 127 LLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRP- 185
L+ Q EFA+R++A G ++ RL+V V+ ADVE V V F P PKV S++V I+P
Sbjct: 117 LMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPN 176
Query: 186 --KAEIPDVNLDEWRAFTRTCFSKKNKTL 212
K I + N + F R F +NK++
Sbjct: 177 KGKYHIENENF--FDDFLRAIFQHRNKSV 203
>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|B Chain B, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|C Chain C, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|D Chain D, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
Length = 255
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 14/222 (6%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPD--DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
K GQH L + VL IV S+I+P DT++EIGPG G LT LL + +EID
Sbjct: 5 KRFGQHFLHDSFVLQKIV--SAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRD 62
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLVYG 118
+V L ++ + + DAL+ +F VV N+PY IS+PL+ L
Sbjct: 63 LVAFLQKKYNQQ---KNITIYQNDALQFDFSSVKTDKPLRVVGNLPYNISTPLLFHLFSQ 119
Query: 119 TKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDS 178
LQKE RR+ A G ++ RL+V + D ++ VS + F P P+V+S
Sbjct: 120 IHCIEDXHFXLQKEVVRRITAEVGSHDYGRLSVXAQYFCDNTYLFTVSPQAFTPPPRVES 179
Query: 179 SVVIIRPKAEIPDV--NLDEWRAFTRTCFSKKNKTLGATFKQ 218
+++ + P+ V NLD+ + FS + KT+G K+
Sbjct: 180 AIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKK 221
>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With Adenosine In Space Group P212121
pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
Length = 271
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 113/234 (48%), Gaps = 18/234 (7%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINP-DDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
+F K GQ+ L ++ L IV + P V E+GPG G LT LLE +V AIE
Sbjct: 19 LFADKRFGQNFLVSEAHLRRIV--EAARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEK 76
Query: 61 DERMVEILNRRAADSGFHDRLNVISKDAL---KTEFPQFDLVVANIPYGISSPLVAKLVY 117
D R+ +L SG RL + +DAL E PQ L+VAN+PY I++PLV +L+
Sbjct: 77 DLRLRPVLEE--TLSGLPVRL--VFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLLK 132
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
T F L+QKE A R+ A P + L + V A E + D+ F P PKV
Sbjct: 133 -TGRFARLVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVW 191
Query: 178 SSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKT----LGATFKQKKKVIELLR 227
SS+V + P + D L F K+ KT L A K +V E LR
Sbjct: 192 SSLVRLTPTGALDDPGLFR---LVEAAFGKRRKTLLNALAAAGYPKARVEEALR 242
>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
Length = 271
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 112/234 (47%), Gaps = 18/234 (7%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINP-DDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
+F K GQ+ L ++ L IV + P V E+GPG G LT LLE +V AIE
Sbjct: 19 LFADKRFGQNFLVSEAHLRRIV--EAARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEK 76
Query: 61 DERMVEILNRRAADSGFHDRLNVISKDAL---KTEFPQFDLVVANIPYGISSPLVAKLVY 117
D R+ +L SG RL + +DAL E PQ L+VAN+PY I++PLV +L+
Sbjct: 77 DLRLRPVLEE--TLSGLPVRL--VFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLLK 132
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
T F L+QKE A R A P + L + V A E + D+ F P PKV
Sbjct: 133 -TGRFARLVFLVQKEVAERXTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVW 191
Query: 178 SSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKT----LGATFKQKKKVIELLR 227
SS+V + P + D L F K+ KT L A K +V E LR
Sbjct: 192 SSLVRLTPTGALDDPGLFR---LVEAAFGKRRKTLLNALAAAGYPKARVEEALR 242
>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit
Methyltransferase A From Burkholderia Pseudomallei
Length = 279
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 23/239 (9%)
Query: 3 FFHKSKGQHILTNQRVLDSIVRKSSINPD--DTVLEIGPGTGNLT----LKLLEVSKKVH 56
F K GQ+ L + V+D+IV ++I P+ + ++EIGPG G LT +L +H
Sbjct: 15 FARKRFGQNFLVDHGVIDAIV--AAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLH 72
Query: 57 AIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL--------VVANIPYGIS 108
A+E+D ++ L +R F + L + + DAL +F ++ N+PY IS
Sbjct: 73 AVELDRDLIGRLEQR-----FGELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNIS 127
Query: 109 SPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKR 168
SPL+ L+ +LQ E R++A PG F+RL+V ++ ++ ++DV
Sbjct: 128 SPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLIDVPPE 187
Query: 169 DFLPCPKVDSSVVIIRPKA--EIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIEL 225
F P PKVDS++V + P A E+P V+ FS++ K L T + +++
Sbjct: 188 SFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDLVDF 246
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 16/213 (7%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERM 64
KS GQH+L ++ VL I + +I +TV+E+G GTGNLT LL+ KK++ IE+D M
Sbjct: 7 KSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREM 66
Query: 65 VEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLVYGT 119
VE L + D +RL VI++DA ++FP L VV N+PY ++S ++ VY
Sbjct: 67 VENL-KSIGD----ERLEVINEDA--SKFPFCSLGKELKVVGNLPYNVASLIIENTVYNK 119
Query: 120 KSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSS 179
A ++QKE A +L G + L+V V+ DV +VM V R F+P PKV S+
Sbjct: 120 DCVPLAVFMVQKEVAEKL---QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQSA 176
Query: 180 VVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTL 212
V+ + + P +L ++ F F + K L
Sbjct: 177 VIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVL 209
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 16/213 (7%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERM 64
KS GQH+L ++ VL I + +I +TV+E+G GTGNLT LL+ KK++ IE+D M
Sbjct: 6 KSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREM 65
Query: 65 VEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLVYGT 119
VE L + D +RL VI++DA ++FP L VV N+PY ++S ++ VY
Sbjct: 66 VENL-KSIGD----ERLEVINEDA--SKFPFCSLGKELKVVGNLPYNVASLIIENTVYNK 118
Query: 120 KSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSS 179
A ++QKE A +L G + L+V V+ DV +VM V R F+P PKV S+
Sbjct: 119 DCVPLAVFMVQKEVAEKL---QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQSA 175
Query: 180 VVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTL 212
V+ + + P +L ++ F F + K L
Sbjct: 176 VIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVL 208
>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
pdb|3TPZ|B Chain B, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
Length = 273
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 109/219 (49%), Gaps = 18/219 (8%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPD--DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
K GQ+ L +Q V+DSIV S+INP ++EIGPG LT + E ++ IE+D
Sbjct: 13 KRFGQNFLNDQFVIDSIV--SAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDR- 69
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFD-------LVVANIPYGISSPLVAKLV 116
++ R +L + +DA+ F + V N PY IS+PL+ L
Sbjct: 70 --DLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNPPYNISTPLMFHLF 127
Query: 117 YGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKV 176
T + +LQKE RL+A P + RL+V + +V V++V F P PKV
Sbjct: 128 SYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKV 187
Query: 177 DSSVVIIRPKAEIPDVNLDEWRAFTRT---CFSKKNKTL 212
DS+VV + P A +P + + R +R F+++ KT+
Sbjct: 188 DSAVVRLVPHATMPH-PVKDVRVLSRITTEAFNQRRKTI 225
>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|4ADV|V Chain V, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
Length = 252
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 10 QHILTNQRVLDSIVRKSSINPD--DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
Q+ L +Q V+DSIV S+INP ++EIGPG LT + E ++ IE+D ++
Sbjct: 1 QNFLNDQFVIDSIV--SAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDR---DL 55
Query: 68 LNRRAADSGFHDRLNVISKDALKTEFPQFD-------LVVANIPYGISSPLVAKLVYGTK 120
R +L + +DA+ F + V N+PY IS+PL+ L T
Sbjct: 56 AARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTD 115
Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
+ +LQKE RL+A P + RL+V + +V V++V F P PKVDS+V
Sbjct: 116 AIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAV 175
Query: 181 VIIRPKAEIPDVNLDEWRAFTRT---CFSKKNKTL 212
V + P A +P + + R +R F+++ KT+
Sbjct: 176 VRLVPHATMPH-PVKDVRVLSRITTEAFNQRRKTI 209
>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
Length = 244
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 110/207 (53%), Gaps = 12/207 (5%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
Q+ +T++ +D I+ +N D + EIG G G+ TL+L++ V AIEID ++ +
Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTT 68
Query: 69 NRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSAT 126
+ D HD V++KD L+ +FP Q + NIPY IS+ ++ K+V+ + +
Sbjct: 69 ENKLVD---HDNFQVLNKDILQFKFPKNQSYKIFGNIPYNISTDIIRKIVFDSIA-DEIY 124
Query: 127 LLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV-IIRP 185
L+++ FA+RLL + LA+ + D+ + V + F P PKV+SS++ + R
Sbjct: 125 LIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRK 179
Query: 186 KAEIPDVNLDEWRAFTRTCFSKKNKTL 212
K+ I + ++ F +K+ K +
Sbjct: 180 KSRISHKDKQKYNYFVMKWVNKEYKKI 206
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 113/197 (57%), Gaps = 17/197 (8%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
Q+ LT+++VL+ I+++ ++ DTV EIG G G+LT KL ++SK+V +IE+D +
Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHL---F 64
Query: 69 NRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSAT 126
N + + R+ +I +D L+ +FP Q +V NIPY +S+ ++ K+V+ +++
Sbjct: 65 NLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFESRA-SDIY 123
Query: 127 LLLQKEFARRLLASPGDSEFNR-LAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV-IIR 184
L++++ F +R L + +R L + + ++ ++ + F P PKV+S ++ + R
Sbjct: 124 LIVEEGFYKRTL------DIHRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTR 177
Query: 185 PKAEIPDVNLDEWRAFT 201
++PD W+ +T
Sbjct: 178 HTTDVPD---KYWKLYT 191
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNR 70
H T + L ++ R + P D VL++G G+G L + ++ K ++ID ++
Sbjct: 103 HAETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA 160
Query: 71 RAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAK----LVYGTKSFRSAT 126
A +G R S +A F FDL+VAN+ + + L + LV G ++ +
Sbjct: 161 NAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGI 219
Query: 127 LLLQKEFARRLLASPG 142
L + R +A G
Sbjct: 220 LKDRAPLVREAMAGAG 235
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNR 70
H T + L ++ R + P D VL++G G+G L + ++ K ++ID ++
Sbjct: 103 HHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA 160
Query: 71 RAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAK----LVYGTKSFRSAT 126
A +G R S +A F FDL+VAN+ + + L + LV G ++ +
Sbjct: 161 NAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGI 219
Query: 127 LLLQKEFARRLLASPG 142
L + R +A G
Sbjct: 220 LKDRAPLVREAMAGAG 235
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS 75
+ +L+ +V KS N VLE G GTGNLT KLL + V+ IE M R A
Sbjct: 35 EDILEDVVNKSFGN----VLEFGVGTGNLTNKLLLAGRTVYGIEPSREM-----RMIAKE 85
Query: 76 GFHDRLNVISKDALKTEFP-QFDLVVANIPY 105
++ D L E P D +V+ +
Sbjct: 86 KLPKEFSITEGDFLSFEVPTSIDTIVSTYAF 116
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFH 78
IV + I+P D ++E G G+G LTL L + +V + EI E ++ +GF
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD 144
Query: 79 DRLNVISKDALK-TEFPQFDLVVANIP 104
DR+ + KD + E D V+ ++P
Sbjct: 145 DRVTIKLKDIYEGIEEENVDHVILDLP 171
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFH 78
IV + I+P D ++E G G+G LTL L + +V + EI E ++ +GF
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD 144
Query: 79 DRLNVISKDALK-TEFPQFDLVVANIP 104
DR+ + KD + E D V+ ++P
Sbjct: 145 DRVTIKLKDIYEGIEEENVDHVILDLP 171
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 23 VRKSSINPDDTVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEILNRRAADSGFHDRL 81
+RK I TV +IG G+G + + + + S V A ++ + VEI + A G DR
Sbjct: 117 IRKYGIK---TVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRF 173
Query: 82 NVISKDAL---KTEFPQFDLVVANIPYGISSPLVAK 114
V + L K +F +++++N PY SS + K
Sbjct: 174 FVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPK 209
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 23 VRKSSINPDDTVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEILNRRAADSGFHDRL 81
+RK I TV +IG G+G + + + + S V A ++ + VEI + A G DR
Sbjct: 119 IRKYGIK---TVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRF 175
Query: 82 NVISKDAL---KTEFPQFDLVVANIPYGISSPLVAK 114
V + L K +F +++++N PY SS + K
Sbjct: 176 FVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPK 211
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 23 VRKSSINPDDTVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEILNRRAADSGFHDRL 81
+RK I TV +IG G+G + + + + S V A ++ + VEI + A G DR
Sbjct: 129 IRKYGIK---TVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRF 185
Query: 82 NVISKDAL---KTEFPQFDLVVANIPYGISSPLVAK 114
V + L K +F + +++N PY SS + K
Sbjct: 186 FVRKGEFLEPFKEKFASIEXILSNPPYVKSSAHLPK 221
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIE---IDERMVEILNRRAADSG 76
I+R + TVL++G GTG L++ + +++V+A+E I ++ E++ +G
Sbjct: 74 GILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRF----NG 129
Query: 77 FHDRLNVISKDALKTEFP-QFDLVVAN-IPYGI--SSPLVAKLVYGTKSFRSATLLL 129
DR++V+ E P Q D +V+ + YG+ S L + L TK + LLL
Sbjct: 130 LEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 34 VLEIGPGTGNLTLKLLEVSKKVHAIEIDERM------VEILNRRAADSGFHDRLNVISKD 87
++++G G G+++ +L+ H E+D + ++++N AA+ G DR+ I+ D
Sbjct: 194 MIDVGGGIGDISAAMLK-----HFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVD 248
Query: 88 ALKTEFPQFDLVV 100
K +P+ D V+
Sbjct: 249 IYKESYPEADAVL 261
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADSG 76
+++R + P VL+ G+G + L+ L + V+A ++DE+ + + A SG
Sbjct: 193 QALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG 252
Query: 77 FHDRLNVISKDA--LKTEFPQFDLVVANIPYGI 107
+ + DA L FP+ D ++AN P+G+
Sbjct: 253 L-SWIRFLRADARHLPRFFPEVDRILANPPHGL 284
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 36/61 (59%)
Query: 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRA 72
+T + + + K ++N DD V+++G G+G T+++ + K V+AI+ + +E+ +
Sbjct: 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGXTVEIAKRCKFVYAIDYLDGAIEVTKQNL 77
Query: 73 A 73
A
Sbjct: 78 A 78
>pdb|3HM2|A Chain A, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|B Chain B, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|C Chain C, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|D Chain D, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|E Chain E, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|F Chain F, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|G Chain G, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|H Chain H, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
Length = 178
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAI--EIDERMVEILNR 70
LT Q V + + P +T+ +IG G+G++ ++ L + + A+ EI E E +
Sbjct: 8 LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS 67
Query: 71 RAADSGFHDRLNV 83
A + G DR+ V
Sbjct: 68 NAINLGVSDRIAV 80
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 31 DDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI--SKD 87
D + +IG GTG TL L + V ++ I++ +EI N A + DR+ I S D
Sbjct: 47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD 106
Query: 88 ALKTEFPQFDLVVA 101
L + + DL+ +
Sbjct: 107 NLPFQNEELDLIWS 120
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 31 DDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI--SKD 87
D + +IG GTG TL L + V ++ I++ +EI N A + DR+ I S D
Sbjct: 53 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD 112
Query: 88 ALKTEFPQFDLVVA 101
L + + DL+ +
Sbjct: 113 NLPFQNEELDLIWS 126
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFH-- 78
IV + I P VLE G G+G LTL LL V I ++R + R SG +
Sbjct: 91 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ 150
Query: 79 --DRLNVISKDALKTEFP 94
D ++ D +E P
Sbjct: 151 PPDNWRLVVSDLADSELP 168
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKV--HAIEIDERMVEILNRRAADSGFH 78
SI + NPD +L++G GTG L+ L+E + +++ E+M+EI R F
Sbjct: 37 SIASVDTENPD--ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNR-----FR 89
Query: 79 DRLNV--ISKDALKTEFPQ-FDLVVANIP 104
L V I D K +F + +D+VV+ +
Sbjct: 90 GNLKVKYIEADYSKYDFEEKYDMVVSALS 118
>pdb|3H2B|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
pdb|3H2B|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
Length = 203
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
++ + D +L++G GTG T L + ++ +E R+VE+ + FH
Sbjct: 33 LIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFH 89
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 34 VLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF 93
VL++G G G LTL L + +V +E D V L + + + D TE
Sbjct: 237 VLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEE 296
Query: 94 PQFDLVVANIPYGISSPLV 112
+FD++V N P+ + ++
Sbjct: 297 ARFDIIVTNPPFHVGGAVI 315
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 34 VLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF 93
VL++G G G LTL L + +V +E D V L + + + D TE
Sbjct: 237 VLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEE 296
Query: 94 PQFDLVVANIPYGISSPLV 112
+FD++V N P+ + ++
Sbjct: 297 ARFDIIVTNPPFHVGGAVI 315
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
+D +++G GTG +TL+L ++V+AI+ + + G D + + DA +
Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXEGDAPE 93
Query: 91 --TEFPQFDLVV 100
+ P D+ V
Sbjct: 94 ALCKIPDIDIAV 105
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKL 48
+T + ++ I+ INP DTVLE G G+G ++L L
Sbjct: 88 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFL 123
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 26 SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
+ P + +IG GTG TL LL +V +++ E +EI +A ++ H ++
Sbjct: 29 EQVEPGKRIADIGCGTGTATL-LLADHYEVTGVDLSEEXLEIAQEKAXETNRH--VDFWV 85
Query: 86 KDALKTEFPQ 95
+D + E P+
Sbjct: 86 QDXRELELPE 95
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD--SGFHD 79
I+ + + P +LE+G G+GN + +L + + ER + L ++A D S F+D
Sbjct: 102 IIMRCGLRPGXDILEVGVGSGNXSSYILYALNGKGTLTVVERDEDNL-KKAXDNLSEFYD 160
Query: 80 RLNVISKDALKTEF---PQFDLVVANIP 104
NV + + +F +D V+A+IP
Sbjct: 161 IGNVRTSRSDIADFISDQXYDAVIADIP 188
>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
Length = 241
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 8 KGQHILTNQRVLDSIV-RKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVE 66
+G +T +++ + I R S D V++ G G T++ +V AI+ID +
Sbjct: 55 EGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIA 114
Query: 67 ILNRRAADSGFHDRLNVISKD-ALKTEFPQFDLVVANIPYG 106
+ A G D++ I D L F + D+V + P+G
Sbjct: 115 LARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGFH 78
++I++ + D VL++G GTG L++ + K H I +D ++E+ +GF
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK-HVIGVDMSSIIEMAKELVELNGFS 86
Query: 79 DRLNVISK--DALKTEFPQFDLVVA 101
D++ ++ + + FP+ D++++
Sbjct: 87 DKITLLRGKLEDVHLPFPKVDIIIS 111
>pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
Length = 206
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 8 KGQHILTNQRVLDSIV-RKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVE 66
+G +T +++ + I R S D V++ G G T++ +V AI+ID +
Sbjct: 20 EGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGXRVIAIDIDPVKIA 79
Query: 67 ILNRRAADSGFHDRLNVISKD-ALKTEFPQFDLVVANIPYG 106
+ A G D++ I D L F + D+V + P+G
Sbjct: 80 LARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 120
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 26 SSINP---DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLN 82
S+++P + LE+G GTG + L L+ + A++ D +E+ ++ A G ++
Sbjct: 32 SAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAXLEVFRQKIA--GVDRKVQ 89
Query: 83 VISKDALKTEFP 94
V+ DA P
Sbjct: 90 VVQADARAIPLP 101
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDR 80
+ DD +L+IG G+G ++L+L V I+I+ + + A G + +
Sbjct: 28 LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQK 80
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 33 TVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA--L 89
T ++IG G G L++ L + S + A++ + EI + AD+ +DR+ ++ D +
Sbjct: 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQGDVHNI 105
Query: 90 KTEFPQFDLVVA 101
E DL+V+
Sbjct: 106 PIEDNYADLIVS 117
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 34 VLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF 93
VL++ GTG TL+L E +V +++ E M+ + R+A + ++ + D L+ F
Sbjct: 45 VLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF 102
Query: 94 P-QFDLV 99
+FD V
Sbjct: 103 KNEFDAV 109
>pdb|3K0B|A Chain A, Crystal Structure Of A Predicted N6-Adenine-Specific Dna
Methylase From Listeria Monocytogenes Str. 4b F2365
Length = 393
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 59 EIDERMVEILNRRAADSGFHDRLNV--ISKDALKTEFPQFDLVVANIPYG 106
+ID R++EI + A ++G D + + +TE ++ +VVAN PYG
Sbjct: 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYG 318
>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
pdb|2EER|B Chain B, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
Length = 347
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 23 VRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVH-----AIEIDERMVEILNRRAAD 74
VRK+S++P T++ IG G G L ++++K V +++ E +E R AD
Sbjct: 163 VRKASLDPSKTLVVIGAG-GGLGTMAIQIAKAVSGATIIGVDVREEALEAAKRAGAD 218
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRA 72
R+ D + + D VL++G G G ++L +V I I V N RA
Sbjct: 45 ATDRLTDEXIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARA 104
Query: 73 ADSGFHDRLNVISKDA--LKTEFPQFDLVVA 101
+G +R+ DA L E FD V A
Sbjct: 105 TAAGLANRVTFSYADAXDLPFEDASFDAVWA 135
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
Length = 211
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 3 FFHKSKGQHILTNQ-RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
++ G +++ + R L K + P +++LE+G GTG L+ L +KV +E
Sbjct: 13 WYGTPLGAYVIAEEERAL-----KGLLPPGESLLEVGAGTGYW-LRRLPYPQKV-GVEPS 65
Query: 62 ERMVEILNRRAADS 75
E + + RRA ++
Sbjct: 66 EAXLAVGRRRAPEA 79
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD 74
NQ+++ + + P+D VL++ G GN TL L + V +E +VE + A
Sbjct: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330
Query: 75 SGFHD 79
+G +
Sbjct: 331 NGLQN 335
>pdb|3LPM|A Chain A, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
pdb|3LPM|B Chain B, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
Length = 259
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92
++++ G G + L L +K K+ +EI ER+ + R A + D++ +I D K
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADXAKRSVAYNQLEDQIEIIEYDLKKIT 112
Query: 93 --FPQ--FDLVVANIPY 105
P+ D+V N PY
Sbjct: 113 DLIPKERADIVTCNPPY 129
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 26 SSINPDDTVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEILNRRAADSGFHDRLNVI 84
+++ P +LE+G G+G + E+ K V+ IE +VE R +G + ++VI
Sbjct: 87 ANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVI 145
Query: 85 SKDALKTEFPQ--FDLVV--ANIPYGISSPLVAKLVYGTK 120
D K P+ +D+++ A P I PL+ +L G K
Sbjct: 146 LGDGSKGFPPKAPYDVIIVTAGAP-KIPEPLIEQLKIGGK 184
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD 74
NQ+ + + + P+D VL++ G GN TL L + V +E +VE + A
Sbjct: 271 NQKXVARALEWLDVQPEDRVLDLFCGXGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330
Query: 75 SGFHD 79
+G +
Sbjct: 331 NGLQN 335
>pdb|3G2M|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa
pdb|3G2M|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa
Length = 299
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 34 VLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD--SGFHDRLNVISKD 87
VLE+ G G LT L++ +V A+E+ ++ +R A+ + DR ++ D
Sbjct: 86 VLELAAGXGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGD 141
>pdb|3G2O|A Chain A, Crystal Structure Of The Glycopeptide N-methyltransferase
Mtfa Complexed With (s)-adenosyl-l-methionine (sam)
pdb|3G2O|B Chain B, Crystal Structure Of The Glycopeptide N-methyltransferase
Mtfa Complexed With (s)-adenosyl-l-methionine (sam)
pdb|3G2P|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With (S)-Adenosyl-L-Homocysteine (Sah)
pdb|3G2P|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With (S)-Adenosyl-L-Homocysteine (Sah)
pdb|3G2Q|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With Sinefungin
pdb|3G2Q|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With Sinefungin
Length = 299
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 34 VLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD--SGFHDRLNVISKD 87
VLE+ G G LT L++ +V A+E+ ++ +R A+ + DR ++ D
Sbjct: 86 VLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGD 141
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEI 67
G H T +L + ++ + P TV ++G G+G L + ++ +K V A +I + +
Sbjct: 42 GNHQTTQLAMLG--IERAMVKPL-TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA 98
Query: 68 LNRRAADSGFHDRLNVISKDALKTEF-PQFDLVVANIPYGISSPLVAKL 115
AA +G +D + K +L + +FDL+VANI I L+ +L
Sbjct: 99 AEENAALNGIYDI--ALQKTSLLADVDGKFDLIVANILAEILLDLIPQL 145
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 34 VLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
VLEIG G G T + E+ KV ++EI+E+
Sbjct: 74 VLEIGTGIGYYTALIAEIVDKVVSVEINEK 103
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVH--AIEIDERMVEILNRRAADSG 76
LD I + N +LEIG G + + +S +H IE +E ++ + A
Sbjct: 60 LDLIKQLIRXNNVKNILEIGTAIGYSSXQFASISDDIHVTTIERNETXIQYAKQNLATYH 119
Query: 77 FHDRLNVISKDALK 90
F +++ +I +AL+
Sbjct: 120 FENQVRIIEGNALE 133
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
I K H+L + R L +++ P D IGP TLK+LE +K A E+
Sbjct: 4 ITTETGKKMHVLEDGRKLITVI------PGDG---IGPECVEATLKVLEAAKAPLAYEVR 54
Query: 62 ERMVEILNRRAADSG 76
E + RR SG
Sbjct: 55 EAGASVF-RRGIASG 68
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERM 64
I K ++N + VLE G G+G L L EV+ +V E E
Sbjct: 83 IALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEF 125
>pdb|3MTI|A Chain A, The Crystal Structure Of A Rrna Methylase From
Streptococcus Thermophilus To 1.95a
pdb|3MTI|B Chain B, The Crystal Structure Of A Rrna Methylase From
Streptococcus Thermophilus To 1.95a
Length = 185
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD 79
++ + V++ G GN T L +SKKV+A ++ E+ + ++R +D G +
Sbjct: 20 LDDESIVVDATXGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIEN 71
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 34 VLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91
+LEIG G ++ + + +IE DER E ++ G R+ ++ DAL+
Sbjct: 58 ILEIGTAIGYSAIRXAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117
Query: 92 E-----FPQFDLVVANIPYG 106
+P FD++ + G
Sbjct: 118 GEKLELYPLFDVLFIDAAKG 137
>pdb|2IEW|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IEW|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IF8|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
pdb|2IF8|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
Length = 363
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 17 RVLDSIVRKSSINPDDTVLEIGP---GTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAA 73
+V D RKSS + D + P G N K+ E S ++IDER+ +
Sbjct: 45 QVRDVSRRKSSADGDAPLCSWMPTYLGVLNEGAKI-EQSGDAALLKIDERL--------S 95
Query: 74 DSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEF 133
DS D L+ I +K+E + LV+ N+ YG S P + + G + S L ++E
Sbjct: 96 DS--TDNLDSI---PVKSEKSKQYLVLENLLYGFSKPNILDIKLGKTLYDSKASLEKRER 150
Query: 134 ARRL 137
+R+
Sbjct: 151 MKRV 154
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 170 FLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTR 202
LPCPK +S + + KAE P + L + A+++
Sbjct: 194 LLPCPKSVTSAISLLAKAERPLIILGKGAAYSQ 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,224,194
Number of Sequences: 62578
Number of extensions: 239375
Number of successful extensions: 788
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 85
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)