BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047897
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09522|DIM1_CAEEL Probable dimethyladenosine transferase OS=Caenorhabditis elegans
GN=E02H1.1 PE=3 SV=2
Length = 308
Score = 223 bits (567), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 151/223 (67%), Gaps = 1/223 (0%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+ KGQHIL N V+++IV KS++ DTVLE+GPGTGNLT+K+LEV+K V A EID R
Sbjct: 24 FNTDKGQHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVAKTVIACEIDPR 83
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
M+ + +R + ++L V D +K E+P FD+ VAN+PY ISSP V KL+ R
Sbjct: 84 MIAEVKKRVMGTPLQNKLQVNGGDVMKMEWPFFDVCVANLPYQISSPFVQKLLLHRPLPR 143
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
A L+ QKEFA RL+A PGD +++RL+VNV+L+A VE +M V + +F P PKVDS+VV I
Sbjct: 144 YAVLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDSAVVRI 203
Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
PK P VN EW R CF +KNKTL A F+ VIE++
Sbjct: 204 APKNPPPPVNFVEWEGLLRLCFMRKNKTLMAIFRL-SNVIEVI 245
>sp|Q9VAQ5|DIM1_DROME Probable dimethyladenosine transferase OS=Drosophila melanogaster
GN=CG11837 PE=2 SV=1
Length = 306
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 148/225 (65%), Gaps = 1/225 (0%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
I F+K GQHIL N V+ +++ K+++ D VLEIGPGTGN+T+++LE +KKV A EID
Sbjct: 21 IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLERAKKVIACEID 80
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
R+ L +R + +L V+ D LK E P FDL +AN+PY ISSPL+ KL+
Sbjct: 81 TRLAAELQKRVQATPLQPKLQVLIGDFLKAELPFFDLCIANVPYQISSPLIFKLLLHRPL 140
Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
FR A L+ Q+EFA RL+A PGD + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct: 141 FRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSVV 200
Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
+ PK P VN EW TR F +KNKTL ATFK V+E+L
Sbjct: 201 RLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV-TSVLEML 244
>sp|Q9UNQ2|DIM1_HUMAN Probable dimethyladenosine transferase OS=Homo sapiens GN=DIMT1
PE=1 SV=1
Length = 313
Score = 213 bits (541), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 143/216 (66%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
+ F+ GQHIL N +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct: 28 LMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
R+V L++R + +L V+ D LKT+ P FD VAN+PY ISSP V KL+
Sbjct: 88 PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPF 147
Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
FR A L+ Q+EFA RL+A PGD + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct: 148 FRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207
Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
I PK P +N EW R F +KNKTL A FK
Sbjct: 208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243
>sp|Q9D0D4|DIM1_MOUSE Probable dimethyladenosine transferase OS=Mus musculus GN=Dimt1
PE=2 SV=1
Length = 313
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 143/216 (66%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
+ F+ GQHIL N +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct: 28 LMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
R+V L++R + +L V+ D LK++ P FD VAN+PY ISSP V KL+
Sbjct: 88 PRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFFDACVANLPYQISSPFVFKLLLHRPF 147
Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
FR A L+ Q+EFA RL+A PGD + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct: 148 FRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207
Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
I PK P +N EW R F +KNKTL A FK
Sbjct: 208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243
>sp|Q2KHT8|DIM1_BOVIN Probable dimethyladenosine transferase OS=Bos taurus GN=DIMT1 PE=2
SV=1
Length = 313
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 142/216 (65%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
+ F+ GQHIL N +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct: 28 LMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVIACELD 87
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
R+V L++R + +L V+ D LK + P FD VAN+PY ISSP V KL+
Sbjct: 88 PRLVAELHKRVQGTPLASKLQVMVGDVLKADLPFFDACVANLPYQISSPFVFKLLLHRPF 147
Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
FR A L+ Q+EFA RL+A PGD + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct: 148 FRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207
Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
I PK P +N EW R F +KNKTL A FK
Sbjct: 208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243
>sp|Q95KJ0|DIM1_MACFA Probable dimethyladenosine transferase OS=Macaca fascicularis
GN=DIMT1 PE=2 SV=1
Length = 313
Score = 210 bits (534), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 141/216 (65%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
+ F+ GQHIL N +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct: 28 LMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
R+V L +R + +L V+ D LKT+ P FD VAN+PY ISSP V KL+
Sbjct: 88 PRLVAELRKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPF 147
Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
FR A L+ Q+E A RL+A PGD + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct: 148 FRCAILMFQRELALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207
Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
I PK P +N EW R F +KNKTL A FK
Sbjct: 208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243
>sp|Q54QK7|DIM1_DICDI Probable dimethyladenosine transferase OS=Dictyostelium discoideum
GN=dimt1 PE=3 SV=1
Length = 314
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 146/223 (65%), Gaps = 1/223 (0%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
+KS GQH+L N ++D+IV KS + DTVLEIGPGTGNLT+KLLE KKV AIE+D R
Sbjct: 29 MNKSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDPR 88
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
M L +R A S + L +I D LK + P FD+ VAN+PY ISSPL KL+ FR
Sbjct: 89 MAAELQKRVAASPYAQHLQIILGDFLKVDLPYFDVCVANVPYQISSPLTFKLLAHRPIFR 148
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
+A L+ QKEFA RL A PGDS + RL+VN +L++ V +M V K +FLP PKV+S+VV I
Sbjct: 149 TAVLMFQKEFALRLGAKPGDSLYCRLSVNTQLLSKVTHLMKVGKNNFLPPPKVESAVVRI 208
Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
P P +N EW + CFS+KNKTL F+ VIE L
Sbjct: 209 EPFNPPPPINFVEWDGLVKLCFSRKNKTLSGIFRV-SSVIETL 250
>sp|Q6BSY5|DIM1_DEBHA Dimethyladenosine transferase OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DIM1 PE=3 SV=1
Length = 327
Score = 204 bits (519), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 142/214 (66%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+ + GQHIL N V IV K+ I P D VLE+GPGTGNLT+++LE ++KV A E+D R
Sbjct: 32 FNTNLGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILEQARKVIASEMDPR 91
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
M L +R + +L+++ D +KTE P FD+ ++N PY ISSPLV KL+ + R
Sbjct: 92 MAAELTKRVHGTPNQKKLDILLGDFIKTELPYFDVCISNTPYQISSPLVFKLLNQPRPPR 151
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
+ L+ Q+EFA RLLA PGDS + RL+ NV++ A+V +M VSK +F P P+V+SSVV I
Sbjct: 152 VSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVSKNNFRPPPQVESSVVRI 211
Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
K P+++ +EW R CF +KNKT+ A FK
Sbjct: 212 EVKVPRPNIDFNEWDGLLRICFVRKNKTIAAGFK 245
>sp|Q6C7H6|DIM1_YARLI Dimethyladenosine transferase OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DIM1 PE=3 SV=1
Length = 317
Score = 204 bits (518), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 135/209 (64%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
GQHIL N V IV KS I P DTVLE+GPGTGNLT+++LE ++KV A+E+D RM L
Sbjct: 35 GQHILKNPLVAQGIVDKSDIKPSDTVLEVGPGTGNLTVRILEKARKVIAVEMDPRMAAEL 94
Query: 69 NRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLL 128
+R +L ++ D +KTE P FD+ ++N PY ISSPLV KL+ + R + L+
Sbjct: 95 TKRVQGKPEQKKLEIMLGDCIKTELPYFDVCISNTPYQISSPLVFKLLNQPRPPRVSVLM 154
Query: 129 LQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAE 188
Q EFA RLLA PGDS + RL+VNV++ A V VM V + +F P P V+SSVV I K
Sbjct: 155 FQHEFAMRLLARPGDSLYCRLSVNVQMWAKVSHVMKVGRGNFRPPPNVESSVVKIEVKNP 214
Query: 189 IPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
P ++ +EW R CF +KNKT+ A FK
Sbjct: 215 RPPIDFNEWDGLLRVCFVRKNKTINAGFK 243
>sp|P78697|DIM1_KLULA Dimethyladenosine transferase OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=DIM1 PE=3 SV=3
Length = 320
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 142/223 (63%), Gaps = 1/223 (0%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+ GQHIL N V IV K+ I P D VLEIGPGTGNLT+++LE ++KV A+E D R
Sbjct: 31 FNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILEQARKVVAVEFDPR 90
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
M L +R + +L ++ D +KTE P FD+ ++N PY ISSPLV KL+ K R
Sbjct: 91 MAAELTKRVHGTPVEKKLEILLGDFMKTELPYFDVCISNTPYQISSPLVFKLINQPKPPR 150
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
+ L+ Q+EFA RLLA PGDS + RL+ NV++ A+V +M V K +F P PKV+SSVV I
Sbjct: 151 VSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPKVESSVVRI 210
Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
K P V+ +EW R F +KN+T+ A FK V+E+L
Sbjct: 211 EIKNPRPQVDFNEWDGLLRIVFVRKNRTIAAGFKS-TTVLEIL 252
>sp|Q9USU2|DIM1_SCHPO Dimethyladenosine transferase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=dim1 PE=3 SV=1
Length = 307
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 144/223 (64%), Gaps = 1/223 (0%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+K GQHIL N V IV K+ + DTVLE+GPGTGNLT+++LE ++KV A+E+D R
Sbjct: 24 FNKDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKARKVIAVEMDPR 83
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
M + +R + +L V+ D +KT+ P FD+ V+N PY ISSPLV KL+ + R
Sbjct: 84 MAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYFDVCVSNTPYQISSPLVFKLLQQRPAPR 143
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
+A L+ Q+EFA RL+A PGD + RL+ NV++ A V+ +M V K +F P P V+SSVV I
Sbjct: 144 AAILMFQREFALRLVARPGDPLYCRLSANVQMWAHVKHIMKVGKNNFRPPPLVESSVVRI 203
Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
PK P + +EW R F +KNKT+GA FK +IE++
Sbjct: 204 EPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFK-TSSIIEMV 245
>sp|Q6FKY3|DIM1_CANGA Dimethyladenosine transferase OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DIM1
PE=3 SV=1
Length = 317
Score = 199 bits (506), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 143/223 (64%), Gaps = 1/223 (0%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+ GQHIL N V IV K+ I P D VLE+GPGTGNLT+++LE ++KV A+E+D R
Sbjct: 30 FNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQARKVVAVEMDPR 89
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
M L +R + +L ++ D +KTE P FD+ ++N PY ISSPLV KL+ + R
Sbjct: 90 MAAELTKRVHGTPAEKKLEIMLGDFMKTELPYFDICISNTPYQISSPLVFKLINQPRPPR 149
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
+ L+ Q+EFA RLLA PGDS + RL+ NV++ A+V +M V + +F P P+V+SSVV I
Sbjct: 150 VSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGRNNFRPPPQVESSVVRI 209
Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
K P ++ +EW R F +KN+T+ A FK V+E+L
Sbjct: 210 EIKNPRPQIDFNEWDGLLRIVFVRKNRTISAGFKS-TTVLEIL 251
>sp|Q75C90|DIM1_ASHGO Dimethyladenosine transferase OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIM1 PE=3
SV=1
Length = 319
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 142/223 (63%), Gaps = 1/223 (0%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+ GQHIL N V IV K+ I P D VLE+GPGTGNLT+++LE ++KV A+E D R
Sbjct: 30 FNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQARKVVAVEFDPR 89
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
M L +R + +L ++ D +KTE P FD+ ++N PY ISSPLV KL+ + R
Sbjct: 90 MAAELTKRVHGTPAEKKLEIMLGDFMKTELPYFDICISNTPYQISSPLVFKLINQPRPPR 149
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
+ L+ Q+EFA RLLA PGDS + RL+ NV++ A+V VM V + +F P P+V+SSVV I
Sbjct: 150 VSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHVMKVGRNNFRPPPQVESSVVRI 209
Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
K P V+ +EW R F +KN+T+ A FK V+E++
Sbjct: 210 EIKTPRPPVDFNEWDGLLRIVFVRKNRTISAGFKS-TAVLEIM 251
>sp|P41819|DIM1_YEAST Dimethyladenosine transferase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DIM1 PE=1 SV=1
Length = 318
Score = 197 bits (500), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 137/214 (64%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+ GQHIL N V IV K+ I P D VLE+GPGTGNLT+++LE +K V A+E+D R
Sbjct: 30 FNTDLGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILEQAKNVVAVEMDPR 89
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
M L +R + +L ++ D +KTE P FD+ ++N PY ISSPLV KL+ + R
Sbjct: 90 MAAELTKRVRGTPVEKKLEIMLGDFMKTELPYFDICISNTPYQISSPLVFKLINQPRPPR 149
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
+ L+ Q+EFA RLLA PGDS + RL+ NV++ A+V +M V K +F P P+V+SSVV +
Sbjct: 150 VSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVESSVVRL 209
Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
K P V+ +EW R F +KN+T+ A FK
Sbjct: 210 EIKNPRPQVDYNEWDGLLRIVFVRKNRTISAGFK 243
>sp|Q8TWU7|RSMA_METKA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=rsmA PE=3 SV=1
Length = 278
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 131/224 (58%), Gaps = 17/224 (7%)
Query: 1 YIFFHKSK---------GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV 51
Y+ + +SK GQH + + +L+ +V + + DD VLEIGPG G LT L+
Sbjct: 6 YLAYLRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTR 65
Query: 52 SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ-FDLVVANIPYGISSP 110
+ +V A+E+D RMVEIL R + G L ++ D L+ + P + VVANIPY ISSP
Sbjct: 66 AGQVIAVELDGRMVEILKR---ELGEAPNLEIVRADFLEYDVPDDVNKVVANIPYNISSP 122
Query: 111 LVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDF 170
+ KL+ A L Q+EFA R++A PG +++RL V V L+ADVE + V +R F
Sbjct: 123 ITFKLL--ELDIDVAVLTYQREFAERMVAEPGSKKYSRLTVMVNLLADVELLRGVPRRAF 180
Query: 171 LPCPKVDSSVVIIRPKAEI--PDVNLDEWRAFTRTCFSKKNKTL 212
+P P+V SSVV + PK+E PDV+ D + R F KNKT+
Sbjct: 181 IPPPRVGSSVVRLTPKSEEERPDVDPDTLESVCRALFQHKNKTV 224
>sp|Q5FMG3|RSMA_LACAC Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
GN=rsmA PE=3 SV=1
Length = 294
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 133/233 (57%), Gaps = 18/233 (7%)
Query: 3 FFHKSK---GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIE 59
+F K+K GQ+ L +Q + IV + I P D V+EIGPG G+LT +LL KV A E
Sbjct: 20 YFVKAKKNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYE 79
Query: 60 IDERMVEILN----RRAADSGFHDRLNVISKDALKTEFPQ-----FDL-----VVANIPY 105
+D+ + EIL+ ++ + +DR ++ KD LK +F FD+ VVAN+PY
Sbjct: 80 VDDSLPEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQPIKVVANLPY 139
Query: 106 GISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDV 165
I++P++ L F S TL++QKE A RL A PG+ E+ L ++V+ +V+ ++V
Sbjct: 140 YITTPIIFALSESDLHFSSLTLMMQKEVAERLEAKPGNKEYGPLTISVQTEMNVKIALEV 199
Query: 166 SKRDFLPCPKVDSSVVIIRPKAEIPDV-NLDEWRAFTRTCFSKKNKTLGATFK 217
F+P PKVDSSVV++ P E P + N + + CFS++ KTL K
Sbjct: 200 KSTSFMPRPKVDSSVVVLTPLQERPKIENRKHFIWVVKMCFSQRRKTLNNNLK 252
>sp|C5A594|RSMA_THEGJ Probable ribosomal RNA small subunit methyltransferase A
OS=Thermococcus gammatolerans (strain DSM 15229 / JCM
11827 / EJ3) GN=rsmA PE=3 SV=1
Length = 278
Score = 150 bits (379), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 132/214 (61%), Gaps = 8/214 (3%)
Query: 5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERM 64
+++ GQ+ L +++ V+++ ++ DTVLEIGPG G LT +L + + KV+AIE D RM
Sbjct: 17 NRTLGQNFLIVPDIIERNVKRAELSEKDTVLEIGPGLGVLTDELSKKAGKVYAIEADSRM 76
Query: 65 VEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRS 124
+EIL R + + +I DA+K E+P+F+ +V+N+PY ISSP+ KL+ F
Sbjct: 77 IEILQREYS----WPNVELIKGDAVKVEWPEFNKMVSNLPYQISSPVTFKLL--KHEFER 130
Query: 125 ATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIR 184
A L+ Q EFA R++A PGD ++RL++ V+ A+VE V + + F P PKVDS+VV++
Sbjct: 131 AVLIYQLEFAERMIAKPGDRNYSRLSLMVQAKANVELVERIGRGAFWPRPKVDSAVVVLE 190
Query: 185 PKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
PK E + L+E + F + T+ + K+
Sbjct: 191 PKPEKERIELNE--NLVKALFQHRRSTVASALKK 222
>sp|A8YX55|RSMA_LACH4 Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
helveticus (strain DPC 4571) GN=rsmA PE=3 SV=1
Length = 294
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 132/233 (56%), Gaps = 18/233 (7%)
Query: 3 FFHKSK---GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIE 59
+F K+K GQ+ L +Q + IV + I+ D V+EIGPG G+LT +LL KV A E
Sbjct: 20 YFVKAKKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGAKVFAYE 79
Query: 60 IDERMVEILN----RRAADSGFHDRLNVISKDALKTEFPQ-----FDL-----VVANIPY 105
+D+ + EIL ++ D+ DR ++ KD LK F + FD+ VVAN+PY
Sbjct: 80 VDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIKVVANLPY 139
Query: 106 GISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDV 165
I++P++ L F S TL++QKE A RL A PG E+ L ++V+ DV+ ++V
Sbjct: 140 YITTPIIFALAESDLHFASLTLMMQKEVAERLEAKPGSKEYGPLTISVQTEMDVKVALEV 199
Query: 166 SKRDFLPCPKVDSSVVIIRPKAEIPDV-NLDEWRAFTRTCFSKKNKTLGATFK 217
+ F+P PKVDSSVV++ P P++ N + + CFS++ KTL K
Sbjct: 200 NHNSFMPRPKVDSSVVVLTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNLK 252
>sp|Q5JI54|RSMA_PYRKO Probable ribosomal RNA small subunit methyltransferase A
OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=rsmA PE=3 SV=1
Length = 279
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 131/224 (58%), Gaps = 11/224 (4%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
GQ+ L +++ + ++ + DTVLEIGPG G LT L + + KV+AIE D R+VEIL
Sbjct: 21 GQNFLIVPDIIERNIERAEVGEKDTVLEIGPGLGVLTDPLSKRAGKVYAIEKDCRIVEIL 80
Query: 69 NRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLL 128
R + +I DALK E+P+F+ +V+N+PY ISSP+ KL+ ++ F A L+
Sbjct: 81 RREYN----WPNVEIIEGDALKVEWPEFNKMVSNLPYQISSPVTFKLL--SREFERAVLI 134
Query: 129 LQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAE 188
Q EFA R++A PGD ++RL++ V+ A E V + K F P PKVDS+VV++ PK
Sbjct: 135 FQLEFAERMVAKPGDKNYSRLSLMVRAKARAELVERIGKGAFWPRPKVDSAVVVLEPKPP 194
Query: 189 IPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLSKQK 232
++L+E + F + T+ A KK +L LSK K
Sbjct: 195 EERIDLNE--NLVKALFQHRRSTVSAAL---KKSAHMLGLSKDK 233
>sp|Q9V1P8|RSMA_PYRAB Probable ribosomal RNA small subunit methyltransferase A
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rsmA PE=3
SV=1
Length = 269
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 124/210 (59%), Gaps = 10/210 (4%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
GQH L + V+D + + ++ D VLE+GPG G LT +L + +KKV IE+D R++EIL
Sbjct: 21 GQHFLIVKDVIDKAIEVAEVSKSDVVLEVGPGLGFLTDELSKRAKKVFTIELDRRIIEIL 80
Query: 69 NRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLL 128
+ + + +I DA+K E+P F+ VV+NIPY ISSP KL+ F A ++
Sbjct: 81 RNEYS----WNNVEIIQGDAVKVEWPSFNKVVSNIPYQISSPFTFKLL--KMEFERAVVM 134
Query: 129 LQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAE 188
Q EFA R+ A PGD ++RL++ + +ADVE VM + K F P PKVDS++V+I PK +
Sbjct: 135 YQLEFALRMTAKPGDRNYSRLSLMTQALADVEIVMRIGKGAFYPKPKVDSALVLITPKKD 194
Query: 189 IPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
++N + + F + K + ++
Sbjct: 195 RIELN----ESLVKALFQHRRKVVSKALRE 220
>sp|O59487|RSMA_PYRHO Probable ribosomal RNA small subunit methyltransferase A
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=rsmA PE=3 SV=2
Length = 268
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 136/224 (60%), Gaps = 13/224 (5%)
Query: 7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVE 66
S GQH L + V++ + +++N +D +LE+GPG G LT +L + +KKV+ IEID++++E
Sbjct: 19 SIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAKRAKKVYTIEIDQKIIE 78
Query: 67 ILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSAT 126
IL + + + + +I DA++ E+P+F+ VV+NIPY ISSP KL+ F A
Sbjct: 79 ILKKEYS----WNNVKIIQGDAVRVEWPKFNKVVSNIPYKISSPFTFKLL--KTDFERAV 132
Query: 127 LLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPK 186
++ Q EFA R++A PG ++RL++ + + +VE VM + K F P PKVDS++V+I P+
Sbjct: 133 VMYQLEFALRMVAKPGSRNYSRLSLMAQALGNVEIVMKIGKGAFYPRPKVDSALVLIEPR 192
Query: 187 AEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLSK 230
+ + L+E + F + KT+ K I +L +SK
Sbjct: 193 KD--KIVLNE--NLVKALFQHRRKTVPRALKDS---IHMLGVSK 229
>sp|Q74LI0|RSMA_LACJO Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rsmA
PE=3 SV=1
Length = 296
Score = 144 bits (362), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 128/234 (54%), Gaps = 21/234 (8%)
Query: 3 FFHKSK--GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
F H K GQ+ L + + IV + I P D V+EIGPG G+LT +LL KV A E+
Sbjct: 21 FMHAKKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEV 80
Query: 61 DERMVEILN----RRAADSGFHDRLNVISKDALKTEFPQ-----FDL-----VVANIPYG 106
D+ + EILN ++ DR ++ KD LK F + DL +VAN+PY
Sbjct: 81 DQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKSVKIVANLPYY 140
Query: 107 ISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVS 166
I++P++ L+ F S TL++QKE A RL+A P E+ L++ V+ +V +V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKPKTKEYGPLSIAVQSRMNVRLAEEVK 200
Query: 167 KRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFK 217
F+P PKVDS+VV++ P E PD+N ++ F + CF+++ KTL K
Sbjct: 201 STSFMPRPKVDSAVVVLTPLLEKPDIN--DYAFFDHVVKMCFAQRRKTLANNLK 252
>sp|B6YTK7|RSMA_THEON Probable ribosomal RNA small subunit methyltransferase A
OS=Thermococcus onnurineus (strain NA1) GN=rsmA PE=3
SV=1
Length = 272
Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 133/220 (60%), Gaps = 14/220 (6%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
GQ+ L +++ V ++ ++ D VLEIGPG G LT L + + KV+AIE D R+VEIL
Sbjct: 21 GQNFLIVDDIIERNVERAELSGRDVVLEIGPGLGVLTDALSKRAGKVYAIEKDPRLVEIL 80
Query: 69 NRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAK-LVYGTKSFRSATL 127
+ S + +I DALK +FP+F+ +V+N+PY ISSP+ + L YG F A L
Sbjct: 81 RKEYNWSN----VEIIEGDALKVDFPEFNKIVSNLPYQISSPITFRFLGYG---FERAVL 133
Query: 128 LLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII--RP 185
+ Q EFA+R++A PGD ++RL++ V+ + VE V + + F P PKVDS+V+++ +P
Sbjct: 134 IYQLEFAQRMVARPGDRNYSRLSLMVQAKSYVELVERIGRGAFYPRPKVDSAVIVLEPKP 193
Query: 186 KAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIEL 225
K+E+ ++N D R F + T+ A K+ ++ L
Sbjct: 194 KSEVIELNED----LVRALFQHRRSTVAAALKKSHHMLGL 229
>sp|Q8TH24|RSMA_PYRFU Probable ribosomal RNA small subunit methyltransferase A
OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=rsmA PE=3 SV=1
Length = 273
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 125/210 (59%), Gaps = 8/210 (3%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
GQ+ L + V+ V S I D VLE+GPG G LT +L + + KV+AIE+D+R++EIL
Sbjct: 21 GQNFLIMRDVIIKAVETSEIKKSDVVLEVGPGFGFLTDELSKRAGKVYAIELDKRIIEIL 80
Query: 69 NRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLL 128
+ + +I DA+K E+P+F+ VV+NIPY ISSP KL+ F A ++
Sbjct: 81 ENEYN----WENVEIIQGDAVKIEWPEFNKVVSNIPYQISSPFTFKLL--KHDFEKAVVM 134
Query: 129 LQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAE 188
Q EFA+R++A PGD ++RL++ V +A+ + VM + + F P PKVDS++V+I PK +
Sbjct: 135 YQLEFAKRMVAKPGDRNYSRLSLMVNALANAKIVMKIGRGAFYPKPKVDSALVLIVPKPK 194
Query: 189 IPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
+ L+E + F + K + K+
Sbjct: 195 DERIELNE--NLVKALFQHRRKLVSKALKE 222
>sp|Q04C60|RSMA_LACDB Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC BAA-365)
GN=rsmA PE=3 SV=1
Length = 296
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 17/232 (7%)
Query: 3 FFHKSK--GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
F H K GQ+ L + + IVR + I P D V+E+GPG G+LT +LL KV A E+
Sbjct: 21 FVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEV 80
Query: 61 DERMVEILNRRAAD----SGFHDRLNVISKDALKTEFPQ-----FDL-----VVANIPYG 106
D+ + EIL + R +I KD LK +F FDL VVAN+PY
Sbjct: 81 DQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKVVANLPYY 140
Query: 107 ISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVS 166
I++P++ L+ + F S TL++QKE A RL A PG + L++ V+ V+ ++V
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQMSVDLALEVG 200
Query: 167 KRDFLPCPKVDSSVVIIRPKAEIPDV-NLDEWRAFTRTCFSKKNKTLGATFK 217
F+P PKVDS+VV++ P + DV + ++ + CF+++ KTL K
Sbjct: 201 HASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANNLK 252
>sp|Q1GBR1|RSMA_LACDA Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM
20081) GN=rsmA PE=3 SV=1
Length = 296
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 17/232 (7%)
Query: 3 FFHKSK--GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
F H K GQ+ L + + IVR + I P D V+E+GPG G+LT +LL KV A E+
Sbjct: 21 FVHAKKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEV 80
Query: 61 DERMVEILNRRAAD----SGFHDRLNVISKDALKTEFPQ-----FDL-----VVANIPYG 106
D+ + EIL + R +I KD LK +F FDL VVAN+PY
Sbjct: 81 DQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKVVANLPYY 140
Query: 107 ISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVS 166
I++P++ L+ + F S TL++QKE A RL A PG + L++ V+ V+ ++V
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQMSVDLALEVG 200
Query: 167 KRDFLPCPKVDSSVVIIRPKAEIPDV-NLDEWRAFTRTCFSKKNKTLGATFK 217
F+P PKVDS+VV++ P + DV + ++ + CF+++ KTL K
Sbjct: 201 HASFMPQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLANNLK 252
>sp|Q98RJ3|RSMA_MYCPU Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma
pulmonis (strain UAB CTIP) GN=rsmA PE=3 SV=1
Length = 252
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 136/226 (60%), Gaps = 12/226 (5%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
GQ+ L +Q +++ IV S + + ++EIGPG G LT L++ + KV A EID+ MV IL
Sbjct: 8 GQNFLIDQNIINKIVDSSEV-ENRNIIEIGPGKGALTKILVKKANKVLAYEIDQDMVNIL 66
Query: 69 NRRAADSGFHDRLNVISKDALKTEF--PQFDLVVANIPYGISSPLVAKLVYGTKSFRSAT 126
N++ + F +I+KD LK EF Q +VANIPY I+S ++ K++ + F AT
Sbjct: 67 NQQISSKNFV----LINKDFLKEEFDKSQNYNIVANIPYYITSDIIFKIIENHQIFDQAT 122
Query: 127 LLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPK 186
L++QKE A R+LA DSEF++L+++V+ DV + DVSK F P PKVDS+V+ + K
Sbjct: 123 LMVQKEVALRILAKQNDSEFSKLSLSVQFFFDVFLICDVSKNSFRPIPKVDSAVIKLVKK 182
Query: 187 AEIPDVNL-DEWRAFTRTCFSKKNKTLGATFK---QKKKVIELLRL 228
D +L E+ F + FS + KTL K ++K+++ L
Sbjct: 183 KN-KDFSLWKEYFEFLKIAFSSRRKTLLNNLKYFFNEQKILKFFEL 227
>sp|Q8PU18|RSMA_METMA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=rsmA PE=3 SV=2
Length = 271
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 124/205 (60%), Gaps = 8/205 (3%)
Query: 10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
QH L + LD IV + ++P DTVLEIG G GNLT +L +KKV A+E+D +V +L+
Sbjct: 18 QHFLIDAGYLDRIVAAAELSPQDTVLEIGAGIGNLTERLARRAKKVIAVELDPALVSVLH 77
Query: 70 RRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLL 129
R D+ + + +I+ DALK +FP+FD VV+N+PY ISS + KL+ F+ L+
Sbjct: 78 DR-FDAA--ENIEIIAGDALKVDFPEFDKVVSNLPYSISSEITFKLL--RHKFKLGVLMY 132
Query: 130 QKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEI 189
Q EFA R+++ PG +++RL ++ AD VM V K F P P+VDS+V+ + P+
Sbjct: 133 QYEFAVRMVSPPGCKDYSRLTIDTCYFADASIVMKVPKGAFQPAPEVDSAVIKLIPRPAP 192
Query: 190 PDVNLDE--WRAFTRTCFSKKNKTL 212
+V DE + F FS++ K L
Sbjct: 193 FEVR-DETFFLQFVAAVFSQRRKKL 216
>sp|A2C1Z5|RSMA_PROM1 Ribosomal RNA small subunit methyltransferase A OS=Prochlorococcus
marinus (strain NATL1A) GN=rsmA PE=3 SV=1
Length = 291
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 118/192 (61%), Gaps = 9/192 (4%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEI 67
GQH L +Q VLD IV+ + +NP+D VLE+GPG G LT KL+E K + AIE+D +V
Sbjct: 19 GQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQAKFIQAIELDRDLVIG 78
Query: 68 LNRR-AADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYGISSPLVAKLVYGTK----- 120
L +R + F R I L E + VVANIPY I+ PL+ +L+ +
Sbjct: 79 LKKRFNHQNKFSLREGDILSAPLDAENGVTINKVVANIPYNITGPLLKRLIGELRKAPEN 138
Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
SF + LL+QKE A+RLLA PG+S F+ L+V V+L+A + V DV + F P PKVDS V
Sbjct: 139 SFETLVLLMQKEVAQRLLARPGNSNFSALSVRVQLLAKCQDVCDVPSKCFQPAPKVDSKV 198
Query: 181 VIIRPKAEI-PD 191
V+I+P A I PD
Sbjct: 199 VMIKPFASIDPD 210
>sp|C6A222|RSMA_THESM Probable ribosomal RNA small subunit methyltransferase A
OS=Thermococcus sibiricus (strain MM 739 / DSM 12597)
GN=rsmA PE=3 SV=1
Length = 273
Score = 140 bits (353), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 127/219 (57%), Gaps = 8/219 (3%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
GQ+ L V+ V ++ I +T+LEIGPG G LT +L + + KV+AIE D R++EIL
Sbjct: 21 GQNFLIVGDVIKREVERAEIKNSETILEIGPGLGVLTDELAKRAGKVYAIEKDSRIIEIL 80
Query: 69 NRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLL 128
+ S + ++ DALK +FP+F+ VV+N+PY ISSP+ KL+ F A L+
Sbjct: 81 KKEYNWSN----VEIMQGDALKIKFPEFNKVVSNLPYQISSPITFKLL--KYDFERAVLI 134
Query: 129 LQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAE 188
Q EFA+R++A PGD ++RL+V V+ +V+ V + + F P PKVDS+V+++ PK +
Sbjct: 135 YQLEFAQRMVAKPGDKNYSRLSVMVQAKVNVDLVERIGRGAFYPKPKVDSAVIVMEPKPK 194
Query: 189 IPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLR 227
+ L+E + F + K K ++ L R
Sbjct: 195 DEQIELNE--NLVKALFQHRRKLASKALKDSYHMLGLTR 231
>sp|Q8TQU8|RSMA_METAC Probable ribosomal RNA small subunit methyltransferase A
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=rsmA PE=3 SV=1
Length = 269
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 20/211 (9%)
Query: 10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
QH L + LD IV + ++P DT+LEIG G GNLT +L +KKV A+E+D +V +L
Sbjct: 18 QHFLIDIGYLDRIVVAAELSPQDTILEIGAGIGNLTERLARRAKKVIAVELDPALVSVL- 76
Query: 70 RRAADSGFHDRLN------VISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
HDR + VI+ DALK +FP+FD VV+N+PY ISS + KL+ F+
Sbjct: 77 --------HDRFDKVENIEVIAGDALKVDFPEFDKVVSNLPYSISSEITFKLL--RYKFK 126
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
L+ Q EFA R+++ PG +++RL V+ AD +M V K F P P+VDS+VV +
Sbjct: 127 LGILMYQYEFAARMVSPPGRKDYSRLTVDTYYFADASILMKVPKGAFQPAPEVDSAVVKL 186
Query: 184 RPKAEIPDVNLDE--WRAFTRTCFSKKNKTL 212
P+ +V DE + F FS++ K L
Sbjct: 187 VPRPSPFEVR-DEAFFLEFVAAVFSQRRKKL 216
>sp|Q97EX0|RSMA_CLOAB Ribosomal RNA small subunit methyltransferase A OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=rsmA PE=3 SV=1
Length = 276
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 128/223 (57%), Gaps = 13/223 (5%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F K GQ+ LT+ VLD IV + I DD ++EIGPG G LT +LLE +KKV AIE+DE
Sbjct: 17 FSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRLLEKAKKVCAIELDES 76
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEF------PQFDLVVANIPYGISSPLVAKLVY 117
++ I+ + +D +I DALK +F Q +VAN+PY +++P+++KL+
Sbjct: 77 LIPIITNEMKE---YDNFTLIHNDALKVDFNNIIGEEQSVKLVANLPYYVTTPIISKLLN 133
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
+F+S T+++QKE R+ A P ++ L + V+ DV+ V V F+P PKVD
Sbjct: 134 EGYNFKSLTIMIQKEVGDRIAAKPSTKDYGALTLLVQYYCDVKVVRVVKPSCFIPQPKVD 193
Query: 178 SSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFK 217
S+VI K E P V + + + F R+ F+ + KTL K
Sbjct: 194 -SLVIRLDKLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMK 235
>sp|B3EQT0|RSMA_CHLPB Ribosomal RNA small subunit methyltransferase A OS=Chlorobium
phaeobacteroides (strain BS1) GN=rsmA PE=3 SV=1
Length = 262
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 122/218 (55%), Gaps = 11/218 (5%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
K GQ+ LT+Q + IV + + +D VLEIGPG G LT +LEV + A+E D +
Sbjct: 15 KKLGQNFLTDQNICRKIVESAQLQENDHVLEIGPGFGALTTAILEVVPRFTAVEKDRILA 74
Query: 66 EILNRRAADSGFHDRLNVISKDALKTEFPQFD-----LVVANIPYGISSPLVAKLVYGTK 120
E + + + VI D LK + + ++ NIPY I++P++ KL+ +
Sbjct: 75 EFIRNE------YPSVRVIEMDFLKIDLEELASEGRLRIMGNIPYSITTPILFKLLDNRR 128
Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
+ S TL++Q E ARRL+ASPG E+ LAV ++ DV ++ V++ F P P+VDS+V
Sbjct: 129 NIFSETLMMQHEVARRLVASPGSKEYGILAVQLQTFCDVTYLFKVNRTVFKPRPEVDSAV 188
Query: 181 VIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
V I PK I D + +R F RT F ++ KTL K+
Sbjct: 189 VSIIPKTAIFDADETGFRNFVRTSFGQRRKTLHNNLKK 226
>sp|Q466S6|RSMA_METBF Probable ribosomal RNA small subunit methyltransferase A
OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
GN=rsmA PE=3 SV=1
Length = 287
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 10/206 (4%)
Query: 10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
QH L + LD IV + + P D VLEIG G GNLT +L + KKV AIE+D +V +L+
Sbjct: 28 QHFLVDAGYLDRIVAAAELGPKDVVLEIGAGVGNLTERLAKKVKKVIAIELDPVLVRVLH 87
Query: 70 RRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLL 129
R G + +I+ DALK EFP+FD +V+N+PY ISS + KL+ F+ L+
Sbjct: 88 DRFDKVG---NIEIIAGDALKVEFPEFDKIVSNLPYSISSEITFKLL--RHKFKLGILMY 142
Query: 130 QKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKA-- 187
Q EFA R+++ P +++RL V+ AD +M V K F P P+VDS+V+ + P+
Sbjct: 143 QYEFAARMVSQPNCKDYSRLTVDTCYFADASILMKVPKSAFQPAPEVDSAVIKLVPRPVP 202
Query: 188 -EIPDVNLDEWRAFTRTCFSKKNKTL 212
E+ D + F FS++ K L
Sbjct: 203 FEVKDQAF--FMNFVSAVFSQRRKKL 226
>sp|Q12XH7|RSMA_METBU Probable ribosomal RNA small subunit methyltransferase A
OS=Methanococcoides burtonii (strain DSM 6242) GN=rsmA
PE=3 SV=1
Length = 270
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Query: 10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
QH L ++R LDSIV ++ ++ D VLEIG G GNLT +LLE + KV+ IE+D +V +L
Sbjct: 18 QHFLIDERSLDSIVDQAELSEKDVVLEIGGGIGNLTERLLEKAGKVYVIELDPALVHVLK 77
Query: 70 RRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLL 129
R +D+ ++L +I D LK + P+F+ VVAN+PY ISSP+ KL F L+
Sbjct: 78 DRFSDN---EKLEIIPGDVLKLDLPKFNKVVANLPYSISSPITFKLF--KHEFELGILMY 132
Query: 130 QKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPK 186
Q EFA+R++A ++RL+VN AD + +M + F P P+V S+VV + P+
Sbjct: 133 QYEFAQRMVAKANTENYSRLSVNTHYFADADIIMKIPPSAFSPPPEVWSAVVKVVPR 189
>sp|Q46L58|RSMA_PROMT Ribosomal RNA small subunit methyltransferase A OS=Prochlorococcus
marinus (strain NATL2A) GN=rsmA PE=3 SV=1
Length = 291
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 117/192 (60%), Gaps = 9/192 (4%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEI 67
GQH L +Q VLD IV+ + +NP+D VLE+GPG G LT KL+E + + AIE+D +V
Sbjct: 19 GQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQARFIQAIELDRDLVVG 78
Query: 68 LNRR-AADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYGISSPLVAKLVYGTK----- 120
L +R + + F R I L E + VVANIPY I+ PL+ +L+ +
Sbjct: 79 LKKRFSHQNKFSLREGDILSAPLDAENGLTINKVVANIPYNITGPLLKRLIGELRKAPDN 138
Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
F + LL+QKE A+RLLA PG S F+ L+V ++L+A + V DV + F P PKVDS V
Sbjct: 139 CFETLVLLMQKEVAQRLLARPGTSNFSALSVRIQLLAKCQDVCDVPSKCFQPAPKVDSKV 198
Query: 181 VIIRPKAEI-PD 191
V+I+P A I PD
Sbjct: 199 VMIKPFASIDPD 210
>sp|O27381|RSMA_METTH Probable ribosomal RNA small subunit methyltransferase A
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=rsmA PE=3 SV=1
Length = 273
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 125/214 (58%), Gaps = 7/214 (3%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
+S GQ+ L ++ I+ + + DD VLEIGPG G LTL + E++ V AIE D +
Sbjct: 21 RSLGQNYLIDEVKRQRILEYADLREDDRVLEIGPGIGTLTLPMAELAGHVTAIESDPLIA 80
Query: 66 EILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSA 125
IL R D ++VI DAL+ +FP+F+ VV+N+PY ISSP+ +L+ F A
Sbjct: 81 AILMDRLQ----VDNVDVIVGDALRVDFPEFNKVVSNLPYQISSPITFRLL--EHDFELA 134
Query: 126 TLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRP 185
L+ QKEFARR++A PG E++RL+V V +A+VE V + F P P+V+S+VV ++P
Sbjct: 135 VLMYQKEFARRMVAEPGTREYSRLSVMVHFLAEVEIVDYLKPGCFFPRPRVESAVVTLKP 194
Query: 186 KA-EIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
P D RA + K +K+L +F +
Sbjct: 195 TGFRAPAFLEDVCRALFQHRKKKTSKSLRESFHE 228
>sp|C1FQ40|RSMA_CLOBJ Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Kyoto / Type A2) GN=rsmA PE=3 SV=1
Length = 275
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 135/223 (60%), Gaps = 13/223 (5%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+K+ GQ+ L ++ VL+ I+ + IN +DTV+EIGPG G LT +LLE +K+V++IE+D
Sbjct: 14 FNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGD 73
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQF----DLV--VANIPYGISSPLVAKLVY 117
++ IL + ++ +I KDALK +F + D + VAN+PY +++P++++L+
Sbjct: 74 LIPILQEELKE---YNNFTLIHKDALKIDFNELMENKDSIKLVANLPYYVTTPIISRLLT 130
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
+F+S T+++QKE A R+ A P E+ L V V+ + + + VS F+P PKVD
Sbjct: 131 EKCNFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKVSPNSFIPRPKVD 190
Query: 178 SSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFK 217
S V+ + +E P V + + F R+ F+ + KTL + K
Sbjct: 191 SIVIKLDRLSE-PRVRVKSQKLFFNVVRSSFNMRRKTLWNSLK 232
>sp|B4RBS4|RSMA_PHEZH Ribosomal RNA small subunit methyltransferase A OS=Phenylobacterium
zucineum (strain HLK1) GN=rsmA PE=3 SV=1
Length = 285
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 120/222 (54%), Gaps = 9/222 (4%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
++ K+ GQH L + + I R + + D V+E+GPG G LT LLE +V A+E D
Sbjct: 18 LWAKKAFGQHFLLDLNITRKIARLAQVGDGDVVIEVGPGPGGLTRALLETGARVIAVEKD 77
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLV 116
ER +L AD+ H L ++ DAL + +V+N+PY + +PL+ K +
Sbjct: 78 ERFRPLLQE-VADAAPH--LTLVFGDALTADEAALSAGRPAHLVSNLPYNVGTPLLIKWL 134
Query: 117 YGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKV 176
G + S TL+ QKE A R+ A+PG+ + RLAV + AD VMDV R F P PKV
Sbjct: 135 TGPWTPASLTLMFQKEVADRITAAPGEDAYGRLAVIAQATADARPVMDVPARAFTPPPKV 194
Query: 177 DSSVVIIRPKAEIPDVN-LDEWRAFTRTCFSKKNKTLGATFK 217
+S+VV + P+A P LD + T F ++ K L ++ K
Sbjct: 195 ESAVVRLEPRAARPSPERLDALQKVTAAAFGQRRKMLRSSLK 236
>sp|C3KXY4|RSMA_CLOB6 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain 657 / Type Ba4) GN=rsmA PE=3 SV=1
Length = 275
Score = 137 bits (344), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 134/223 (60%), Gaps = 13/223 (5%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+K+ GQ+ L ++ VL+ I+ + IN +DTV+EIGPG G LT +LLE +K+V++IE+D
Sbjct: 14 FNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGD 73
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQF----DLV--VANIPYGISSPLVAKLVY 117
++ IL + ++ +I KDALK +F + D + VAN+PY +++P++++L+
Sbjct: 74 LIPILQEELKE---YNNFTLIHKDALKIDFNRLMENKDSIKLVANLPYYVTTPIISRLLT 130
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
F+S T+++QKE A R+ A P E+ L V V+ D + + VS F+P PKVD
Sbjct: 131 EKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCDTKIIRKVSPNCFIPRPKVD 190
Query: 178 SSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFK 217
S V+ + +E P V + + F R+ F+ + KTL + K
Sbjct: 191 SIVIKLDRLSE-PRVRVKSEKLFFNVVRSSFNMRRKTLWNSLK 232
>sp|A7FQA9|RSMA_CLOB1 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain ATCC 19397 / Type A) GN=rsmA PE=3 SV=1
Length = 275
Score = 137 bits (344), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 134/223 (60%), Gaps = 13/223 (5%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+K+ GQ+ L ++ VL+ I+ + IN +DTV+EIGPG G LT +LLE +K+V++IE+D
Sbjct: 14 FNKNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGD 73
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQF----DLV--VANIPYGISSPLVAKLVY 117
++ IL + ++ +I KDALK +F + D + VAN+PY +++P++++L+
Sbjct: 74 LIPILQEELKE---YNNFTLIHKDALKIDFNELMENKDSIKLVANLPYYVTTPIISRLLT 130
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
F+S T+++QKE A R+ A P E+ L V V+ + + + VS F+P PKVD
Sbjct: 131 EKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKVSPNSFIPRPKVD 190
Query: 178 SSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFK 217
S V+ + +E P V + + F R+ F+ + KTL + K
Sbjct: 191 SIVIKLDRLSE-PRVRVKSQKLFFNVVRSSFNMRRKTLWNSLK 232
>sp|B4S787|RSMA_PROA2 Ribosomal RNA small subunit methyltransferase A OS=Prosthecochloris
aestuarii (strain DSM 271 / SK 413) GN=rsmA PE=3 SV=1
Length = 261
Score = 137 bits (344), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 11/225 (4%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
K GQ+ LT++ + IV+ + I P D V+EIGPG G LT +LEV A+E D ++
Sbjct: 15 KKLGQNFLTDRNTIRKIVQSAEIQPGDHVVEIGPGFGALTSAILEVCPSFTAVEKDRKLA 74
Query: 66 EILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLVYGTK 120
+ + + +N++ D L+ +F + V+ NIPY I+SP++ KL+
Sbjct: 75 DFIREE------YPSVNLVESDILEVDFAKLAEEGPVKVMGNIPYSITSPILFKLLENRS 128
Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
S TL++Q E A RL A+PG E+ LAV ++ DV ++ V K+ F P P+VDS+V
Sbjct: 129 HIISETLMMQHEVALRLAANPGTKEYGILAVQLQTFCDVRYLFKVGKKVFRPRPEVDSAV 188
Query: 181 VIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIEL 225
V I PK D E+R F R F ++ KTL KQ + +L
Sbjct: 189 VRIVPKKTPLDDCETEFRRFVRLAFQQRRKTLQNNLKQHYDISQL 233
>sp|O28491|RSMA_ARCFU Probable ribosomal RNA small subunit methyltransferase A
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=rsmA PE=3 SV=1
Length = 244
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 118/217 (54%), Gaps = 8/217 (3%)
Query: 5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERM 64
KS GQH+L ++RV+ IV + ++ DD VLE+G GTGNLT LL V IE D M
Sbjct: 4 RKSLGQHMLVDRRVISRIVGYAELSEDDVVLEVGCGTGNLTSALLRKCS-VVGIEKDPLM 62
Query: 65 VEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRS 124
V+ L R +D R +I DALK +FP F VANIPY ISSPL KL+ FR
Sbjct: 63 VKRLRERFSDFIGKGRFRLIQGDALKVDFPYFTKFVANIPYKISSPLTFKLL--KTDFRL 120
Query: 125 ATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIR 184
A ++ Q+EFA RL E NRL V K E + V F P PKV+S++V I
Sbjct: 121 AVVMYQREFAERLCG-----EDNRLGVISKTYCKAEILEIVKPSSFNPPPKVESAIVRIV 175
Query: 185 PKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKK 221
P+ E+ N + + F FS + K +G ++ +K
Sbjct: 176 PEPEVFVENRELFEKFVTFAFSMRRKRMGKIVQEFRK 212
>sp|Q04DR8|RSMA_OENOB Ribosomal RNA small subunit methyltransferase A OS=Oenococcus oeni
(strain ATCC BAA-331 / PSU-1) GN=rsmA PE=3 SV=1
Length = 292
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 122/190 (64%), Gaps = 10/190 (5%)
Query: 4 FHKSK--GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
H SK GQ+ L + VL IV+ ++I PDDTV+EIGPG G+LT +L + +K+V A EID
Sbjct: 22 LHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAKAAKQVVAYEID 81
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLV 116
++++ IL+ + + ++++D LK +F F +VAN+PY I++P++ L+
Sbjct: 82 KKLIPILSETLRP---YKNVEIVNRDILKADFSIFAKNQSLKIVANLPYYITTPILFYLL 138
Query: 117 YGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKV 176
+ +F+S T+++QKE A RL A G ++ L++ ++ +VE ++ V+++ F+P P V
Sbjct: 139 NSSLNFKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNVEIILPVTRKSFMPSPNV 198
Query: 177 DSSVVIIRPK 186
DS++V + PK
Sbjct: 199 DSAIVQLTPK 208
>sp|A7G9I5|RSMA_CLOBL Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Langeland / NCTC 10281 / Type F)
GN=rsmA PE=3 SV=1
Length = 275
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 133/223 (59%), Gaps = 13/223 (5%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+K+ GQ+ L ++ VL+ I+ + I+ +DTV+EIGPG G LT +LLE +K+V++IE+D
Sbjct: 14 FNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGD 73
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL------VVANIPYGISSPLVAKLVY 117
++ IL + ++ +I KDALK +F + +VAN+PY +++P++++L+
Sbjct: 74 LIPILQEELKE---YNNFTLIHKDALKIDFNELMENKESIKLVANLPYYVTTPIISRLLT 130
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
F+S T+++QKE A R+ A P E+ L V V+ + + + VS F+P PKVD
Sbjct: 131 EKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKVSPNSFIPRPKVD 190
Query: 178 SSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFK 217
S V+ + +E P V + + F R+ F+ + KTL + K
Sbjct: 191 SIVIKLDRLSE-PRVRVKSQKLFFNVVRSSFNMRRKTLWNSLK 232
>sp|B1KRY8|RSMA_CLOBM Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Loch Maree / Type A3) GN=rsmA PE=3
SV=1
Length = 275
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 134/223 (60%), Gaps = 13/223 (5%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+K+ GQ+ L ++ VL+ I++ + I+ +DTV+EIGPG G LT +LLE +K+V++IE+D
Sbjct: 14 FNKNLGQNFLVDESVLEDIIKGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGD 73
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQF----DLV--VANIPYGISSPLVAKLVY 117
++ IL + ++ +I KDALK +F D + VAN+PY +++P++++L+
Sbjct: 74 LIPILQEELKE---YNNFTLIHKDALKIDFNGLMENKDSIKLVANLPYYVTTPIISRLLK 130
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
F+S T+++QKE A R+ A P E+ L V V+ + E + VS F+P PKVD
Sbjct: 131 EKCDFKSLTIMIQKEVAERIDAEPNCKEYGSLTVLVQYYCNTEIIRKVSPNCFIPRPKVD 190
Query: 178 SSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFK 217
S V+ + +E P V + + F R+ F+ + KTL + K
Sbjct: 191 SIVIKLDRLSE-PRVRVKSEKLFFNVVRSSFNMRRKTLWNSLK 232
>sp|B1ID54|RSMA_CLOBK Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain Okra / Type B1) GN=rsmA PE=3 SV=1
Length = 275
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 133/223 (59%), Gaps = 13/223 (5%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
F+K+ GQ+ L ++ VL+ I+ + I+ +DTV+EIGPG G LT +LLE +K+V++IE+D
Sbjct: 14 FNKNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGD 73
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQF----DLV--VANIPYGISSPLVAKLVY 117
++ IL + ++ +I KDALK F + D + VAN+PY +++P++++L+
Sbjct: 74 LIPILQEELKE---YNNFTLIHKDALKINFNELMENKDSIKLVANLPYYVTTPIISRLLT 130
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
F+S T+++QKE A R+ A P E+ L V V+ + + + VS F+P PKVD
Sbjct: 131 EKCDFKSLTIMIQKEVAERINAEPNCKEYGSLTVLVQYYCNTKIIRKVSPNSFIPKPKVD 190
Query: 178 SSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFK 217
S V+ + +E P V + + F R+ F+ + KTL + K
Sbjct: 191 SIVIKLDRLSE-PRVRVKSQKLFFNVVRSSFNMRRKTLWNSLK 232
>sp|Q3ARC0|RSMA_CHLCH Ribosomal RNA small subunit methyltransferase A OS=Chlorobium
chlorochromatii (strain CaD3) GN=rsmA PE=3 SV=1
Length = 263
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 117/219 (53%), Gaps = 12/219 (5%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
K GQ+ LT++ + V S PDD V+EIGPG G LT +L+E + IE D +
Sbjct: 15 KKLGQNFLTDRNITRKTVLLSGAKPDDQVVEIGPGFGALTRELVEECHNLTVIEKDPTLA 74
Query: 66 EILNRRAADSGFHDRLNVISKDALKTEFPQFDL------VVANIPYGISSPLVAKLVYGT 119
+ + ++ VI D L F ++ NIPY I+SP++ L+
Sbjct: 75 TFIRNE------YPQIKVIEGDVLTINFSAMAQAGKPLQILGNIPYSITSPILFHLLEHR 128
Query: 120 KSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSS 179
++FRSATL++Q E A RL A P E+ LAV ++ VE++ VS++ F P PKV+S+
Sbjct: 129 RAFRSATLMMQHEVALRLAAKPATKEYGILAVQMQAFCKVEYLFKVSRKVFKPQPKVESA 188
Query: 180 VVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
V+ + P A P ++ D +R F R F ++ KTL K+
Sbjct: 189 VIKLTPHATDPALDADGFRRFVRIAFHQRRKTLLNNLKE 227
>sp|Q8EU92|RSMA_MYCPE Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma
penetrans (strain HF-2) GN=rsmA PE=3 SV=1
Length = 272
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 15/233 (6%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
F + GQ+ L N+ + IV I PDD VLEIGPG G LT +L +K + +E+D
Sbjct: 18 FFASRKMGQNFLINENIKKKIVDSLEIKPDDHVLEIGPGFGALTKIVLSQTKNLTVVELD 77
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLV 116
+R+VE L + + L +I+ D LK +F +F+ +++N+PY ISS ++ K++
Sbjct: 78 KRLVEFLKQE------YKELRIINIDVLKFDFKEFNKDTQYKIISNLPYSISSKIIFKIL 131
Query: 117 YGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKV 176
+F + L++QKE A R+ A G ++N V +++ ++++ + DVS F P P+V
Sbjct: 132 -KYANFSQSVLMVQKEMADRITAKVGTKKYNNFTVLLRITSEIKKLFDVSNNCFFPKPEV 190
Query: 177 DSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ---KKKVIELL 226
DS+V+ K + N ++ +F CFS+K KT+ K K+K+ E+
Sbjct: 191 DSTVISFERKKDFDFTNFEKLESFLLKCFSQKRKTIFNNLKNYFPKQKIEEVF 243
>sp|B3QMU5|RSMA_CHLP8 Ribosomal RNA small subunit methyltransferase A OS=Chlorobaculum
parvum (strain NCIB 8327) GN=rsmA PE=3 SV=1
Length = 274
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 11/223 (4%)
Query: 1 YIFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
+I K GQ+ L ++ + IVR+S I D VLEIGPG G L+ +LEV AIE
Sbjct: 10 HIAAKKKLGQNFLLDKNIPRKIVRESGIKEGDLVLEIGPGFGALSTAILEVMPSFTAIEK 69
Query: 61 DERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD-----LVVANIPYGISSPLVAKL 115
D + + H +N+I D LK V+ NIPY I+SP++ +L
Sbjct: 70 DPELARFIREE------HPEINLIEGDFLKVPLEPLTGSGKLAVLGNIPYSITSPILFRL 123
Query: 116 VYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPK 175
+ SATL++Q E A+R+ A PG E+ LAV ++ DV+++ V + F P P+
Sbjct: 124 LDNRHLIESATLMMQHEVAQRITAVPGTKEYGILAVQMQAFCDVKYLFKVGRAVFKPRPE 183
Query: 176 VDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
VDS+V+ + PKA+ P + + +R F R F ++ KTL K+
Sbjct: 184 VDSAVIRLVPKAQNPVEDSEGFRTFVRRAFHQRRKTLWNNLKE 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,757,877
Number of Sequences: 539616
Number of extensions: 3132450
Number of successful extensions: 11715
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 474
Number of HSP's that attempted gapping in prelim test: 9791
Number of HSP's gapped (non-prelim): 1342
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)