Query 047897
Match_columns 232
No_of_seqs 243 out of 3569
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0030 KsgA Dimethyladenosine 100.0 3.5E-53 7.7E-58 335.5 23.2 223 2-227 2-229 (259)
2 PTZ00338 dimethyladenosine tra 100.0 4.1E-51 8.8E-56 334.5 22.8 218 2-219 8-225 (294)
3 PRK00274 ksgA 16S ribosomal RN 100.0 3.7E-46 8E-51 304.2 21.5 223 2-228 14-244 (272)
4 KOG0820 Ribosomal RNA adenine 100.0 2.1E-45 4.6E-50 286.4 17.7 224 2-226 30-253 (315)
5 PRK14896 ksgA 16S ribosomal RN 100.0 5.4E-45 1.2E-49 295.3 20.8 212 2-218 1-213 (258)
6 TIGR00755 ksgA dimethyladenosi 100.0 6.9E-45 1.5E-49 294.2 20.7 213 2-218 1-216 (253)
7 PF00398 RrnaAD: Ribosomal RNA 100.0 1.1E-42 2.4E-47 282.3 18.2 214 2-218 2-223 (262)
8 smart00650 rADc Ribosomal RNA 100.0 6.9E-35 1.5E-39 222.3 16.5 166 19-187 2-169 (169)
9 KOG0821 Predicted ribosomal RN 99.9 5.3E-26 1.1E-30 173.1 13.7 212 3-216 23-259 (326)
10 COG2263 Predicted RNA methylas 99.7 3.2E-15 6.9E-20 112.3 16.1 137 2-142 15-160 (198)
11 PHA03412 putative methyltransf 99.7 4.6E-16 9.9E-21 122.2 9.4 97 4-109 26-128 (241)
12 COG4123 Predicted O-methyltran 99.6 4.3E-16 9.3E-21 123.3 8.0 100 9-111 26-131 (248)
13 COG2518 Pcm Protein-L-isoaspar 99.6 1.6E-15 3.5E-20 116.6 9.8 94 7-102 50-145 (209)
14 PF12847 Methyltransf_18: Meth 99.6 1.7E-14 3.7E-19 102.1 10.0 74 30-103 1-78 (112)
15 PRK13944 protein-L-isoaspartat 99.6 7.8E-14 1.7E-18 109.5 13.3 96 8-104 51-151 (205)
16 TIGR00080 pimt protein-L-isoas 99.6 6.2E-14 1.3E-18 110.9 12.7 92 12-104 59-155 (215)
17 PF05175 MTS: Methyltransferas 99.6 2.9E-14 6.3E-19 108.7 10.1 88 21-109 22-112 (170)
18 COG2226 UbiE Methylase involve 99.6 1.6E-14 3.4E-19 114.4 8.6 87 16-103 37-127 (238)
19 PHA03411 putative methyltransf 99.6 2.9E-14 6.3E-19 114.5 9.9 92 8-108 45-139 (279)
20 PRK13942 protein-L-isoaspartat 99.5 1.5E-13 3.3E-18 108.3 13.8 93 8-102 55-152 (212)
21 TIGR01177 conserved hypothetic 99.5 5.8E-14 1.3E-18 117.9 11.8 96 13-109 165-262 (329)
22 PF13659 Methyltransf_26: Meth 99.5 1.6E-14 3.5E-19 103.1 5.7 78 31-108 1-83 (117)
23 PRK13168 rumA 23S rRNA m(5)U19 99.5 5.9E-13 1.3E-17 116.0 16.2 101 16-117 283-389 (443)
24 COG2890 HemK Methylase of poly 99.5 5.1E-14 1.1E-18 115.2 8.6 76 33-109 113-190 (280)
25 TIGR03533 L3_gln_methyl protei 99.5 2.2E-13 4.7E-18 112.0 11.4 81 29-109 120-203 (284)
26 PF13847 Methyltransf_31: Meth 99.5 2.6E-13 5.6E-18 101.5 10.8 78 29-107 2-85 (152)
27 TIGR00537 hemK_rel_arch HemK-r 99.5 1.9E-13 4.2E-18 105.0 10.2 86 22-109 11-96 (179)
28 PF01170 UPF0020: Putative RNA 99.5 2.6E-13 5.6E-18 104.1 10.7 96 13-108 11-119 (179)
29 PRK15001 SAM-dependent 23S rib 99.5 3.1E-13 6.7E-18 114.4 12.0 90 19-108 217-311 (378)
30 PF01135 PCMT: Protein-L-isoas 99.5 2.9E-13 6.2E-18 105.9 10.9 94 9-104 52-150 (209)
31 PF01209 Ubie_methyltran: ubiE 99.5 1.2E-13 2.7E-18 110.0 8.5 87 16-103 33-124 (233)
32 PRK14966 unknown domain/N5-glu 99.5 2.3E-13 5E-18 115.5 10.5 79 29-109 250-333 (423)
33 TIGR00536 hemK_fam HemK family 99.5 4.2E-13 9.1E-18 110.5 11.4 79 32-110 116-197 (284)
34 PRK10909 rsmD 16S rRNA m(2)G96 99.5 7.9E-13 1.7E-17 102.8 11.7 92 16-108 38-134 (199)
35 COG2519 GCD14 tRNA(1-methylade 99.5 1E-12 2.2E-17 103.5 12.2 115 3-119 69-188 (256)
36 PRK11207 tellurite resistance 99.5 2.3E-13 5.1E-18 106.1 8.7 83 22-105 22-105 (197)
37 COG2813 RsmC 16S RNA G1207 met 99.5 3.7E-13 8E-18 108.9 10.0 93 19-112 147-241 (300)
38 PRK14967 putative methyltransf 99.5 4.8E-13 1E-17 106.4 10.5 93 15-109 21-115 (223)
39 COG2230 Cfa Cyclopropane fatty 99.5 5.2E-13 1.1E-17 107.7 10.7 83 18-101 60-143 (283)
40 PRK08287 cobalt-precorrin-6Y C 99.5 5.7E-12 1.2E-16 97.5 16.1 93 12-105 13-107 (187)
41 COG2242 CobL Precorrin-6B meth 99.5 2.1E-12 4.6E-17 97.5 13.0 103 13-117 17-123 (187)
42 PRK03522 rumB 23S rRNA methylu 99.5 1.3E-12 2.8E-17 109.1 13.2 104 12-116 151-261 (315)
43 PF02353 CMAS: Mycolic acid cy 99.5 3.5E-13 7.6E-18 109.8 9.5 85 17-102 49-134 (273)
44 PRK00312 pcm protein-L-isoaspa 99.5 1.6E-12 3.4E-17 102.6 12.9 92 12-104 60-153 (212)
45 TIGR02752 MenG_heptapren 2-hep 99.4 1.1E-12 2.4E-17 104.7 11.3 90 15-105 30-124 (231)
46 PLN02244 tocopherol O-methyltr 99.4 8.5E-13 1.8E-17 111.2 10.9 87 17-103 100-194 (340)
47 PRK11805 N5-glutamine S-adenos 99.4 1E-12 2.2E-17 109.0 11.1 79 32-110 135-216 (307)
48 TIGR02021 BchM-ChlM magnesium 99.4 2E-12 4.4E-17 102.5 11.9 84 18-102 41-126 (219)
49 PRK00107 gidB 16S rRNA methylt 99.4 1.5E-12 3.3E-17 100.3 10.5 75 28-103 43-120 (187)
50 PLN02233 ubiquinone biosynthes 99.4 4.1E-12 9E-17 103.3 13.1 87 18-104 61-154 (261)
51 PF02384 N6_Mtase: N-6 DNA Met 99.4 2.7E-12 5.8E-17 107.1 12.2 104 4-108 21-138 (311)
52 TIGR02469 CbiT precorrin-6Y C5 99.4 7.5E-12 1.6E-16 89.9 12.9 88 15-103 4-96 (124)
53 TIGR00477 tehB tellurite resis 99.4 1.6E-12 3.6E-17 101.2 10.0 86 20-107 20-106 (195)
54 PRK01544 bifunctional N5-gluta 99.4 1.5E-12 3.2E-17 114.9 10.8 80 31-110 139-221 (506)
55 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.9E-12 4E-17 104.6 10.4 77 29-105 55-135 (247)
56 PRK10258 biotin biosynthesis p 99.4 3.3E-13 7.1E-18 109.2 5.8 88 15-108 27-116 (251)
57 TIGR03534 RF_mod_PrmC protein- 99.4 2.9E-12 6.4E-17 103.5 11.4 91 17-109 75-168 (251)
58 PRK09489 rsmC 16S ribosomal RN 99.4 2.2E-12 4.7E-17 108.4 10.8 87 20-108 186-274 (342)
59 TIGR00138 gidB 16S rRNA methyl 99.4 3.3E-12 7.2E-17 98.2 11.0 73 30-103 42-117 (181)
60 TIGR00446 nop2p NOL1/NOP2/sun 99.4 5.6E-12 1.2E-16 102.7 12.1 85 23-108 64-153 (264)
61 PRK09328 N5-glutamine S-adenos 99.4 4.7E-12 1E-16 103.7 11.6 92 17-109 95-189 (275)
62 PRK14968 putative methyltransf 99.4 5.4E-12 1.2E-16 97.4 11.0 94 16-109 9-104 (188)
63 PRK11036 putative S-adenosyl-L 99.4 1.8E-12 4E-17 105.1 8.5 86 19-105 34-122 (255)
64 TIGR03704 PrmC_rel_meth putati 99.4 4.2E-12 9.2E-17 102.5 10.6 88 18-109 73-167 (251)
65 PRK14903 16S rRNA methyltransf 99.4 7.6E-12 1.6E-16 108.5 12.7 134 16-152 223-370 (431)
66 KOG3420 Predicted RNA methylas 99.4 1E-12 2.3E-17 94.3 6.0 101 5-108 20-127 (185)
67 PRK11727 23S rRNA mA1618 methy 99.4 4.7E-12 1E-16 104.9 10.8 82 30-111 114-205 (321)
68 PTZ00098 phosphoethanolamine N 99.4 4.9E-12 1.1E-16 102.9 10.6 95 5-102 25-124 (263)
69 TIGR02085 meth_trns_rumB 23S r 99.4 4.1E-12 8.8E-17 108.4 10.3 104 12-116 211-322 (374)
70 COG1041 Predicted DNA modifica 99.4 3.9E-12 8.4E-17 104.8 9.6 97 12-109 179-278 (347)
71 PF08704 GCD14: tRNA methyltra 99.4 6.6E-12 1.4E-16 100.3 10.7 101 16-116 26-135 (247)
72 PRK01683 trans-aconitate 2-met 99.4 3.2E-12 6.9E-17 103.9 9.1 86 17-108 18-106 (258)
73 PRK13943 protein-L-isoaspartat 99.4 1.1E-11 2.4E-16 103.0 12.3 90 12-102 62-156 (322)
74 TIGR00095 RNA methyltransferas 99.3 1.3E-11 2.7E-16 95.6 11.2 97 12-108 30-134 (189)
75 COG2227 UbiG 2-polyprenyl-3-me 99.3 2.4E-12 5.3E-17 100.6 7.1 86 15-102 41-131 (243)
76 PRK14904 16S rRNA methyltransf 99.3 2E-11 4.4E-16 106.5 13.7 90 18-108 238-331 (445)
77 PRK00377 cbiT cobalt-precorrin 99.3 4.1E-11 8.9E-16 93.6 13.9 91 13-103 23-119 (198)
78 PRK15128 23S rRNA m(5)C1962 me 99.3 8.2E-12 1.8E-16 106.8 10.4 96 12-109 204-307 (396)
79 PRK10901 16S rRNA methyltransf 99.3 2.9E-11 6.3E-16 105.0 13.7 90 16-107 230-325 (427)
80 PLN02396 hexaprenyldihydroxybe 99.3 1E-11 2.2E-16 103.4 10.1 74 29-102 130-205 (322)
81 TIGR00740 methyltransferase, p 99.3 1E-11 2.2E-16 99.8 9.8 78 29-106 52-133 (239)
82 TIGR00479 rumA 23S rRNA (uraci 99.3 1.8E-11 3.8E-16 106.6 11.9 98 18-116 280-384 (431)
83 PRK14901 16S rRNA methyltransf 99.3 2.4E-11 5.3E-16 105.7 12.6 95 12-107 234-337 (434)
84 PRK14103 trans-aconitate 2-met 99.3 4.5E-12 9.6E-17 102.9 7.5 84 17-108 16-102 (255)
85 PF06325 PrmA: Ribosomal prote 99.3 1.1E-11 2.3E-16 101.7 9.5 110 29-140 160-274 (295)
86 PF13649 Methyltransf_25: Meth 99.3 5E-12 1.1E-16 87.9 6.4 66 34-101 1-73 (101)
87 COG4106 Tam Trans-aconitate me 99.3 6.7E-12 1.4E-16 96.2 7.5 92 20-117 20-117 (257)
88 PLN02672 methionine S-methyltr 99.3 1E-11 2.2E-16 116.4 9.9 99 12-110 95-218 (1082)
89 PLN03075 nicotianamine synthas 99.3 2.7E-11 5.9E-16 98.8 11.2 81 23-103 116-203 (296)
90 PRK14902 16S rRNA methyltransf 99.3 4.5E-11 9.8E-16 104.3 13.2 90 17-107 237-332 (444)
91 PRK07580 Mg-protoporphyrin IX 99.3 3.6E-11 7.8E-16 95.9 11.5 85 19-104 49-136 (230)
92 PF03848 TehB: Tellurite resis 99.3 2.8E-11 6E-16 93.0 10.3 80 22-103 22-102 (192)
93 COG0116 Predicted N6-adenine-s 99.3 2.5E-11 5.5E-16 101.3 10.4 99 9-108 171-312 (381)
94 PRK14121 tRNA (guanine-N(7)-)- 99.3 4.3E-11 9.2E-16 101.2 11.8 86 22-108 114-205 (390)
95 PRK07402 precorrin-6B methylas 99.3 4.1E-11 8.8E-16 93.4 10.9 89 13-102 23-116 (196)
96 TIGR00563 rsmB ribosomal RNA s 99.3 6.5E-11 1.4E-15 102.8 13.2 134 16-151 224-371 (426)
97 KOG2904 Predicted methyltransf 99.3 2.7E-11 5.9E-16 95.9 9.7 95 16-110 131-237 (328)
98 COG3963 Phospholipid N-methylt 99.3 3.4E-11 7.3E-16 88.7 9.3 96 4-105 22-127 (194)
99 PRK12335 tellurite resistance 99.3 2.6E-11 5.7E-16 100.0 9.8 74 30-105 120-194 (287)
100 TIGR00091 tRNA (guanine-N(7)-) 99.3 4E-11 8.7E-16 93.3 10.3 77 30-107 16-99 (194)
101 PF09445 Methyltransf_15: RNA 99.3 8.2E-12 1.8E-16 93.3 6.0 78 32-109 1-83 (163)
102 COG2264 PrmA Ribosomal protein 99.3 4.6E-11 1E-15 97.2 10.8 76 29-104 161-238 (300)
103 PF03602 Cons_hypoth95: Conser 99.3 2.2E-11 4.8E-16 93.6 8.5 95 15-109 25-128 (183)
104 TIGR00406 prmA ribosomal prote 99.3 8.8E-11 1.9E-15 96.9 12.5 76 29-104 158-234 (288)
105 TIGR03587 Pse_Me-ase pseudamin 99.3 4.6E-11 9.9E-16 93.6 10.1 70 28-104 41-114 (204)
106 PLN02336 phosphoethanolamine N 99.3 3.7E-11 7.9E-16 105.9 10.5 94 8-103 242-340 (475)
107 KOG1540 Ubiquinone biosynthesi 99.2 9E-11 2E-15 92.2 10.9 83 19-101 89-183 (296)
108 TIGR02987 met_A_Alw26 type II 99.2 2.6E-11 5.7E-16 107.9 9.0 101 6-108 1-125 (524)
109 PRK00121 trmB tRNA (guanine-N( 99.2 3.5E-11 7.6E-16 94.2 8.5 75 30-105 40-121 (202)
110 PRK11783 rlmL 23S rRNA m(2)G24 99.2 3E-11 6.6E-16 110.6 8.7 95 12-108 522-621 (702)
111 PF08241 Methyltransf_11: Meth 99.2 3.1E-11 6.8E-16 82.3 6.7 67 35-105 1-70 (95)
112 TIGR02143 trmA_only tRNA (urac 99.2 4.2E-11 9.1E-16 101.3 8.5 99 16-116 184-301 (353)
113 PRK05031 tRNA (uracil-5-)-meth 99.2 6.2E-11 1.3E-15 100.7 9.5 104 12-117 185-311 (362)
114 PRK05785 hypothetical protein; 99.2 5.4E-11 1.2E-15 94.7 8.6 66 30-104 51-119 (226)
115 PRK00517 prmA ribosomal protei 99.2 1.5E-10 3.2E-15 93.6 10.9 71 29-105 118-189 (250)
116 TIGR02716 C20_methyl_CrtF C-20 99.2 2.6E-10 5.7E-15 94.9 12.4 84 17-101 136-221 (306)
117 PLN02585 magnesium protoporphy 99.2 1.4E-10 3E-15 96.3 10.4 86 17-103 128-220 (315)
118 COG2265 TrmA SAM-dependent met 99.2 1.9E-10 4.2E-15 99.1 11.4 102 16-118 279-386 (432)
119 PLN02781 Probable caffeoyl-CoA 99.2 1.9E-10 4.1E-15 92.0 10.6 91 13-103 51-152 (234)
120 PRK11873 arsM arsenite S-adeno 99.2 1.5E-10 3.2E-15 94.8 9.9 80 26-106 73-157 (272)
121 PF05958 tRNA_U5-meth_tr: tRNA 99.2 9.6E-11 2.1E-15 99.1 8.9 99 16-116 183-299 (352)
122 TIGR00452 methyltransferase, p 99.2 2.4E-10 5.2E-15 94.8 10.5 98 5-103 92-196 (314)
123 PRK04266 fibrillarin; Provisio 99.2 4.5E-10 9.8E-15 89.2 11.5 85 17-104 56-150 (226)
124 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.9E-10 4.1E-15 105.4 10.5 95 14-108 173-316 (702)
125 PRK00216 ubiE ubiquinone/menaq 99.2 2.9E-10 6.3E-15 91.0 10.3 89 15-103 36-129 (239)
126 PF05401 NodS: Nodulation prot 99.2 1.6E-10 3.5E-15 88.1 8.1 82 25-109 38-121 (201)
127 PRK04148 hypothetical protein; 99.1 4.4E-10 9.6E-15 81.1 9.7 80 17-104 3-87 (134)
128 PRK15068 tRNA mo(5)U34 methylt 99.1 2.2E-10 4.8E-15 95.8 9.4 82 21-102 113-196 (322)
129 PF07021 MetW: Methionine bios 99.1 1.7E-10 3.7E-15 87.8 7.6 74 20-103 5-83 (193)
130 COG0742 N6-adenine-specific me 99.1 7.5E-10 1.6E-14 84.1 10.7 93 16-108 27-127 (187)
131 TIGR02072 BioC biotin biosynth 99.1 1.2E-10 2.6E-15 93.2 6.4 89 14-107 15-110 (240)
132 PRK06202 hypothetical protein; 99.1 5.5E-10 1.2E-14 89.4 10.0 76 28-107 58-141 (232)
133 KOG1271 Methyltransferases [Ge 99.1 5.4E-10 1.2E-14 83.5 9.0 158 18-183 51-222 (227)
134 PF02475 Met_10: Met-10+ like- 99.1 4.2E-10 9.1E-15 87.3 8.8 81 28-108 99-182 (200)
135 PRK06922 hypothetical protein; 99.1 3.5E-10 7.6E-15 100.6 9.4 79 26-106 414-498 (677)
136 PRK11705 cyclopropane fatty ac 99.1 6.1E-10 1.3E-14 95.2 10.5 81 18-103 155-236 (383)
137 smart00828 PKS_MT Methyltransf 99.1 5E-10 1.1E-14 89.0 9.2 71 32-102 1-74 (224)
138 PLN02336 phosphoethanolamine N 99.1 4.1E-10 9E-15 99.3 9.5 90 16-108 23-116 (475)
139 PRK08317 hypothetical protein; 99.1 1.1E-09 2.4E-14 87.5 10.9 88 16-105 5-97 (241)
140 PLN02490 MPBQ/MSBQ methyltrans 99.1 5.5E-10 1.2E-14 93.4 9.4 87 16-106 98-189 (340)
141 KOG1270 Methyltransferases [Co 99.1 2.8E-10 6.1E-15 89.8 6.9 71 31-102 90-165 (282)
142 TIGR03840 TMPT_Se_Te thiopurin 99.1 1.4E-09 3E-14 85.7 10.4 85 18-102 22-120 (213)
143 PRK11088 rrmA 23S rRNA methylt 99.1 1.4E-09 3E-14 89.1 10.7 68 29-102 84-158 (272)
144 PRK04457 spermidine synthase; 99.0 2.2E-09 4.9E-14 87.2 11.1 75 29-103 65-144 (262)
145 PLN02476 O-methyltransferase 99.0 1.8E-09 3.9E-14 87.7 10.4 92 13-104 101-203 (278)
146 KOG2187 tRNA uracil-5-methyltr 99.0 2.7E-09 5.9E-14 91.5 11.5 121 5-126 354-486 (534)
147 KOG3191 Predicted N6-DNA-methy 99.0 1.3E-09 2.7E-14 81.5 8.3 79 30-110 43-125 (209)
148 PRK11933 yebU rRNA (cytosine-C 99.0 4.2E-09 9.1E-14 91.8 12.8 130 19-151 100-245 (470)
149 PRK00050 16S rRNA m(4)C1402 me 99.0 1.2E-09 2.7E-14 89.5 8.9 88 14-104 3-99 (296)
150 PRK13255 thiopurine S-methyltr 99.0 2.7E-09 5.9E-14 84.3 10.2 82 20-101 27-122 (218)
151 PF01596 Methyltransf_3: O-met 99.0 5.6E-10 1.2E-14 87.2 5.9 75 29-103 44-129 (205)
152 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 2.5E-09 5.3E-14 84.7 9.4 85 16-103 25-114 (223)
153 PRK04338 N(2),N(2)-dimethylgua 99.0 2.4E-09 5.2E-14 91.3 9.1 99 14-114 40-143 (382)
154 KOG1541 Predicted protein carb 99.0 2.2E-09 4.7E-14 82.7 7.7 83 13-101 31-118 (270)
155 TIGR02081 metW methionine bios 99.0 2.9E-09 6.3E-14 82.8 8.6 79 19-107 4-87 (194)
156 PRK11188 rrmJ 23S rRNA methylt 99.0 3.4E-09 7.4E-14 83.3 9.0 64 28-103 49-125 (209)
157 PTZ00146 fibrillarin; Provisio 99.0 4.4E-09 9.6E-14 85.7 9.9 85 17-104 116-211 (293)
158 COG4076 Predicted RNA methylas 99.0 7.5E-10 1.6E-14 83.1 4.9 72 31-103 33-104 (252)
159 PF08242 Methyltransf_12: Meth 99.0 1.1E-10 2.3E-15 80.8 0.3 70 35-105 1-76 (99)
160 KOG2730 Methylase [General fun 99.0 5.5E-10 1.2E-14 85.8 3.9 107 9-115 72-185 (263)
161 KOG2915 tRNA(1-methyladenosine 99.0 7.7E-09 1.7E-13 82.1 10.1 101 19-119 94-202 (314)
162 TIGR01983 UbiG ubiquinone bios 98.9 4.8E-09 1E-13 83.3 9.1 89 14-103 25-120 (224)
163 PRK05134 bifunctional 3-demeth 98.9 8.1E-09 1.8E-13 82.6 9.7 86 16-103 34-122 (233)
164 COG1092 Predicted SAM-dependen 98.9 3.5E-09 7.6E-14 89.8 7.9 91 12-105 202-300 (393)
165 COG4122 Predicted O-methyltran 98.9 6.8E-09 1.5E-13 81.3 8.8 88 16-103 45-140 (219)
166 PRK00811 spermidine synthase; 98.9 4.5E-09 9.7E-14 86.5 8.1 76 29-104 75-159 (283)
167 KOG1499 Protein arginine N-met 98.9 2.8E-09 6.1E-14 87.7 6.5 74 28-102 58-134 (346)
168 COG0286 HsdM Type I restrictio 98.9 3.8E-08 8.3E-13 86.7 13.1 179 5-188 162-378 (489)
169 KOG1500 Protein arginine N-met 98.9 1.5E-08 3.3E-13 82.7 9.6 82 21-103 168-251 (517)
170 cd02440 AdoMet_MTases S-adenos 98.9 1.1E-08 2.5E-13 70.0 7.7 74 33-107 1-78 (107)
171 PF08003 Methyltransf_9: Prote 98.8 6.6E-08 1.4E-12 78.6 12.3 90 22-111 107-199 (315)
172 COG2521 Predicted archaeal met 98.8 1.8E-09 3.9E-14 83.9 3.1 81 24-104 128-214 (287)
173 PF05185 PRMT5: PRMT5 arginine 98.8 2.9E-08 6.2E-13 86.3 10.6 72 31-102 187-265 (448)
174 TIGR03438 probable methyltrans 98.8 2.4E-08 5.2E-13 82.9 9.5 71 19-91 54-127 (301)
175 smart00138 MeTrc Methyltransfe 98.8 2.6E-08 5.7E-13 81.1 9.3 92 11-102 72-210 (264)
176 PLN02366 spermidine synthase 98.8 2.8E-08 6.1E-13 82.4 9.6 77 29-105 90-175 (308)
177 COG0144 Sun tRNA and rRNA cyto 98.8 2.7E-08 5.8E-13 84.3 9.6 134 17-153 143-293 (355)
178 PLN02589 caffeoyl-CoA O-methyl 98.8 1.6E-08 3.4E-13 81.2 7.4 89 14-102 63-163 (247)
179 PF13489 Methyltransf_23: Meth 98.8 2.6E-08 5.6E-13 74.6 8.1 78 18-104 9-87 (161)
180 KOG3010 Methyltransferase [Gen 98.8 1.3E-08 2.8E-13 79.6 6.5 72 33-104 36-109 (261)
181 PRK13256 thiopurine S-methyltr 98.8 6.5E-08 1.4E-12 76.5 10.6 86 15-101 29-130 (226)
182 TIGR00438 rrmJ cell division p 98.8 3E-08 6.6E-13 76.7 8.5 67 25-103 27-106 (188)
183 COG2520 Predicted methyltransf 98.8 3E-08 6.6E-13 82.5 8.9 80 29-108 187-269 (341)
184 PRK10742 putative methyltransf 98.8 2.9E-08 6.2E-13 78.9 8.0 89 20-108 76-177 (250)
185 PF10672 Methyltrans_SAM: S-ad 98.8 2.7E-08 5.9E-13 81.3 8.0 91 12-105 108-205 (286)
186 PF05971 Methyltransf_10: Prot 98.8 5.9E-08 1.3E-12 79.4 9.9 82 31-112 103-194 (299)
187 TIGR00478 tly hemolysin TlyA f 98.8 7.5E-08 1.6E-12 76.4 10.1 49 19-67 63-113 (228)
188 PF02390 Methyltransf_4: Putat 98.8 4.6E-08 1E-12 76.0 8.5 76 32-108 19-101 (195)
189 TIGR00006 S-adenosyl-methyltra 98.7 8.2E-08 1.8E-12 79.0 9.5 92 11-104 1-101 (305)
190 COG0220 Predicted S-adenosylme 98.7 8.3E-08 1.8E-12 76.0 9.2 77 32-109 50-133 (227)
191 PRK03612 spermidine synthase; 98.7 1.9E-08 4E-13 89.5 6.1 79 29-107 296-385 (521)
192 PRK01581 speE spermidine synth 98.7 3.1E-08 6.7E-13 83.0 6.7 78 29-106 149-237 (374)
193 PF05724 TPMT: Thiopurine S-me 98.7 7E-08 1.5E-12 76.2 8.4 85 15-100 23-121 (218)
194 KOG4300 Predicted methyltransf 98.7 3E-08 6.4E-13 75.8 5.5 73 30-103 76-153 (252)
195 TIGR00417 speE spermidine synt 98.7 9.2E-08 2E-12 78.2 8.5 78 29-106 71-156 (270)
196 PF08123 DOT1: Histone methyla 98.7 1.2E-07 2.7E-12 74.0 8.7 89 14-102 26-129 (205)
197 COG4976 Predicted methyltransf 98.6 2.1E-08 4.6E-13 77.8 3.5 80 16-101 111-194 (287)
198 PF13679 Methyltransf_32: Meth 98.6 5.7E-07 1.2E-11 66.3 9.6 84 29-112 24-116 (141)
199 COG0421 SpeE Spermidine syntha 98.5 6.7E-07 1.5E-11 73.1 9.7 136 32-182 78-230 (282)
200 KOG1661 Protein-L-isoaspartate 98.5 1E-06 2.2E-11 67.7 9.9 89 14-102 64-169 (237)
201 PF10294 Methyltransf_16: Puta 98.5 5.2E-07 1.1E-11 68.8 8.4 78 28-106 43-131 (173)
202 TIGR00308 TRM1 tRNA(guanine-26 98.5 5.2E-07 1.1E-11 76.8 8.9 83 32-116 46-134 (374)
203 PLN02823 spermine synthase 98.5 4.2E-07 9E-12 76.3 7.0 75 30-104 103-185 (336)
204 PF00891 Methyltransf_2: O-met 98.4 2.6E-06 5.7E-11 68.4 10.5 85 20-113 90-177 (241)
205 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 1.9E-07 4.1E-12 76.8 3.8 128 22-152 77-223 (283)
206 KOG2671 Putative RNA methylase 98.4 2.2E-07 4.8E-12 76.2 3.9 96 14-109 192-298 (421)
207 KOG2899 Predicted methyltransf 98.4 9.5E-07 2.1E-11 69.3 7.0 46 29-74 57-104 (288)
208 PF05219 DREV: DREV methyltran 98.3 4.1E-06 9E-11 66.8 9.1 87 7-101 66-157 (265)
209 PRK01544 bifunctional N5-gluta 98.3 6.2E-06 1.4E-10 73.2 10.7 79 30-109 347-431 (506)
210 PF02527 GidB: rRNA small subu 98.3 7.2E-06 1.6E-10 63.0 9.4 69 33-102 51-122 (184)
211 TIGR01444 fkbM_fam methyltrans 98.3 3E-06 6.4E-11 62.4 7.1 59 33-92 1-61 (143)
212 PRK11760 putative 23S rRNA C24 98.3 3.8E-06 8.3E-11 69.7 8.0 81 29-117 210-294 (357)
213 PF04816 DUF633: Family of unk 98.3 3.4E-06 7.3E-11 66.0 7.4 81 34-114 1-86 (205)
214 KOG2361 Predicted methyltransf 98.3 1.1E-06 2.4E-11 68.9 4.5 96 4-101 42-150 (264)
215 KOG1663 O-methyltransferase [S 98.2 7.3E-06 1.6E-10 64.0 8.5 93 10-102 53-156 (237)
216 PF03291 Pox_MCEL: mRNA cappin 98.2 9.6E-06 2.1E-10 68.0 8.6 78 30-107 62-157 (331)
217 COG1189 Predicted rRNA methyla 98.1 6.4E-06 1.4E-10 64.7 6.4 116 21-142 69-193 (245)
218 COG3897 Predicted methyltransf 98.1 4.2E-06 9.1E-11 63.7 5.1 88 18-108 67-156 (218)
219 COG0275 Predicted S-adenosylme 98.1 2.2E-05 4.7E-10 63.9 9.4 91 11-103 4-104 (314)
220 KOG1122 tRNA and rRNA cytosine 98.1 4.5E-06 9.7E-11 70.4 5.6 127 25-153 236-376 (460)
221 PF01564 Spermine_synth: Sperm 98.1 6E-06 1.3E-10 66.5 6.1 76 30-105 76-160 (246)
222 PRK00536 speE spermidine synth 98.0 3.3E-05 7.2E-10 62.5 8.7 77 29-106 71-150 (262)
223 KOG1975 mRNA cap methyltransfe 98.0 1E-05 2.2E-10 66.2 5.6 80 29-108 116-209 (389)
224 PF11599 AviRa: RRNA methyltra 98.0 2.2E-05 4.8E-10 60.7 7.1 80 29-108 50-181 (246)
225 COG0357 GidB Predicted S-adeno 98.0 2.2E-05 4.8E-10 61.5 7.2 71 31-102 68-142 (215)
226 PF06080 DUF938: Protein of un 98.0 3E-05 6.5E-10 60.1 7.5 96 6-101 1-108 (204)
227 PF01795 Methyltransf_5: MraW 98.0 1.2E-05 2.7E-10 66.2 5.1 90 12-103 2-101 (310)
228 COG2384 Predicted SAM-dependen 97.9 0.0001 2.3E-09 57.3 9.6 74 30-103 16-94 (226)
229 PF04445 SAM_MT: Putative SAM- 97.9 5.8E-05 1.3E-09 59.8 7.6 87 21-107 64-163 (234)
230 KOG2940 Predicted methyltransf 97.9 2.1E-05 4.6E-10 61.4 4.8 79 30-111 72-153 (325)
231 PF01861 DUF43: Protein of unk 97.9 0.00011 2.3E-09 58.2 8.8 105 3-109 15-126 (243)
232 PRK11524 putative methyltransf 97.8 0.00011 2.4E-09 60.5 7.9 58 16-74 195-252 (284)
233 PF12147 Methyltransf_20: Puta 97.8 0.00038 8.3E-09 56.5 10.4 62 30-91 135-200 (311)
234 KOG4058 Uncharacterized conser 97.8 0.00012 2.6E-09 53.4 6.7 81 17-97 59-140 (199)
235 COG3129 Predicted SAM-dependen 97.7 9.3E-05 2E-09 57.9 6.3 84 30-113 78-171 (292)
236 PF01555 N6_N4_Mtase: DNA meth 97.7 0.00012 2.7E-09 57.8 6.9 56 14-70 176-231 (231)
237 PF03059 NAS: Nicotianamine sy 97.7 0.00065 1.4E-08 55.4 10.8 71 32-102 122-199 (276)
238 PF07091 FmrO: Ribosomal RNA m 97.6 0.00029 6.2E-09 56.2 7.6 71 29-101 104-177 (251)
239 KOG2198 tRNA cytosine-5-methyl 97.6 0.00037 7.9E-09 58.3 8.4 123 25-151 150-299 (375)
240 cd00315 Cyt_C5_DNA_methylase C 97.6 0.00019 4.1E-09 58.9 6.5 70 33-109 2-76 (275)
241 COG4262 Predicted spermidine s 97.6 0.00018 4E-09 60.0 6.2 80 29-108 288-378 (508)
242 TIGR03439 methyl_EasF probable 97.6 0.00057 1.2E-08 57.0 9.1 68 20-90 68-143 (319)
243 PRK13699 putative methylase; P 97.5 0.00047 1E-08 54.9 8.1 60 15-75 149-208 (227)
244 TIGR00497 hsdM type I restrict 97.5 0.00053 1.2E-08 61.1 9.1 101 6-107 192-305 (501)
245 PF09243 Rsm22: Mitochondrial 97.5 0.00055 1.2E-08 56.1 8.2 60 16-75 19-81 (274)
246 COG0293 FtsJ 23S rRNA methylas 97.5 0.00029 6.2E-09 54.7 5.9 64 28-103 43-119 (205)
247 PRK10611 chemotaxis methyltran 97.5 0.00057 1.2E-08 56.2 7.6 91 11-101 95-229 (287)
248 PF01269 Fibrillarin: Fibrilla 97.4 0.0024 5.2E-08 50.1 10.0 93 17-112 57-160 (229)
249 PF01739 CheR: CheR methyltran 97.4 0.00036 7.8E-09 54.2 5.5 91 11-101 4-142 (196)
250 PF01728 FtsJ: FtsJ-like methy 97.3 0.0004 8.8E-09 53.2 4.9 72 20-103 10-99 (181)
251 PF05891 Methyltransf_PK: AdoM 97.2 0.0012 2.7E-08 51.5 6.9 72 30-102 55-129 (218)
252 KOG1501 Arginine N-methyltrans 97.2 0.00075 1.6E-08 57.7 6.0 59 33-91 69-128 (636)
253 PHA01634 hypothetical protein 97.2 0.0023 4.9E-08 45.6 7.2 46 30-75 28-74 (156)
254 KOG2912 Predicted DNA methylas 97.1 0.0011 2.5E-08 54.3 5.7 74 35-108 107-191 (419)
255 COG1352 CheR Methylase of chem 97.1 0.0066 1.4E-07 49.4 9.7 71 31-101 97-208 (268)
256 PLN02232 ubiquinone biosynthes 97.1 0.00064 1.4E-08 51.1 3.6 48 56-103 1-52 (160)
257 PF00145 DNA_methylase: C-5 cy 97.0 0.0014 3.1E-08 54.7 5.7 67 33-107 2-73 (335)
258 TIGR00675 dcm DNA-methyltransf 97.0 0.0016 3.4E-08 54.6 5.5 67 34-107 1-71 (315)
259 KOG3045 Predicted RNA methylas 96.9 0.0024 5.3E-08 51.0 5.7 69 16-103 165-236 (325)
260 COG1889 NOP1 Fibrillarin-like 96.8 0.011 2.3E-07 45.7 8.4 92 17-111 60-161 (231)
261 PF05148 Methyltransf_8: Hypot 96.7 0.0038 8.2E-08 48.5 5.6 70 18-104 59-131 (219)
262 KOG2078 tRNA modification enzy 96.7 0.0011 2.4E-08 56.4 2.8 86 4-91 223-311 (495)
263 PF02636 Methyltransf_28: Puta 96.7 0.0069 1.5E-07 49.0 7.0 69 31-102 19-102 (252)
264 COG0500 SmtA SAM-dependent met 96.6 0.012 2.6E-07 42.7 7.6 66 34-101 52-125 (257)
265 KOG3115 Methyltransferase-like 96.6 0.0033 7.2E-08 48.4 4.3 60 32-91 62-129 (249)
266 PF03141 Methyltransf_29: Puta 96.6 0.0043 9.2E-08 54.2 5.3 81 16-102 99-188 (506)
267 KOG1227 Putative methyltransfe 96.6 0.0011 2.3E-08 54.0 1.5 73 30-102 194-269 (351)
268 COG0270 Dcm Site-specific DNA 96.5 0.0072 1.6E-07 50.9 6.4 72 31-108 3-80 (328)
269 PRK10458 DNA cytosine methylas 96.5 0.019 4E-07 50.6 9.1 76 31-109 88-183 (467)
270 COG1565 Uncharacterized conser 96.4 0.02 4.4E-07 48.1 8.4 64 12-75 48-132 (370)
271 PF04672 Methyltransf_19: S-ad 96.4 0.011 2.4E-07 47.9 6.3 59 32-91 70-133 (267)
272 KOG3178 Hydroxyindole-O-methyl 96.4 0.016 3.4E-07 48.4 7.3 80 31-116 178-258 (342)
273 KOG3987 Uncharacterized conser 96.3 0.0017 3.8E-08 50.1 1.1 65 7-71 86-153 (288)
274 PF13578 Methyltransf_24: Meth 96.1 0.0044 9.6E-08 42.9 2.4 68 35-103 1-77 (106)
275 KOG4589 Cell division protein 96.1 0.01 2.2E-07 45.3 4.3 67 28-106 67-147 (232)
276 PF07757 AdoMet_MTase: Predict 96.0 0.0094 2E-07 41.2 3.7 33 30-62 58-90 (112)
277 KOG2651 rRNA adenine N-6-methy 96.0 0.025 5.3E-07 47.8 6.7 43 29-71 152-195 (476)
278 KOG2360 Proliferation-associat 96.0 0.021 4.6E-07 48.2 6.3 86 21-107 204-296 (413)
279 COG1568 Predicted methyltransf 95.9 0.015 3.3E-07 47.0 4.9 103 4-108 124-234 (354)
280 PF04989 CmcI: Cephalosporin h 95.6 0.027 5.9E-07 43.9 5.2 60 30-91 32-97 (206)
281 KOG1709 Guanidinoacetate methy 95.6 0.076 1.6E-06 41.6 7.5 82 18-102 90-176 (271)
282 PF02005 TRM: N2,N2-dimethylgu 95.6 0.041 8.9E-07 47.2 6.7 86 30-116 49-141 (377)
283 PF06962 rRNA_methylase: Putat 95.6 0.028 6.1E-07 41.0 4.8 52 54-105 1-56 (140)
284 KOG1331 Predicted methyltransf 95.6 0.0099 2.1E-07 48.2 2.6 73 18-101 35-109 (293)
285 PF03686 UPF0146: Uncharacteri 95.5 0.076 1.7E-06 37.9 6.7 80 17-111 3-87 (127)
286 KOG1269 SAM-dependent methyltr 95.2 0.039 8.5E-07 47.0 5.3 74 28-101 108-184 (364)
287 PF10237 N6-adenineMlase: Prob 95.0 0.24 5.3E-06 37.2 8.3 92 8-112 2-102 (162)
288 COG0863 DNA modification methy 94.9 0.2 4.3E-06 41.4 8.7 60 15-75 208-267 (302)
289 KOG3924 Putative protein methy 94.8 0.048 1E-06 46.3 4.5 89 14-102 176-279 (419)
290 KOG0822 Protein kinase inhibit 94.6 0.14 3E-06 45.3 7.1 86 17-103 351-447 (649)
291 PF07942 N2227: N2227-like pro 94.5 0.34 7.4E-06 39.5 8.8 41 30-70 56-96 (270)
292 PF07279 DUF1442: Protein of u 94.4 0.2 4.4E-06 39.2 7.0 93 9-102 21-122 (218)
293 KOG1596 Fibrillarin and relate 94.1 0.13 2.8E-06 41.0 5.3 89 17-108 140-239 (317)
294 PF05206 TRM13: Methyltransfer 94.0 0.2 4.3E-06 40.7 6.5 78 16-94 4-88 (259)
295 PF02254 TrkA_N: TrkA-N domain 93.9 0.14 3E-06 35.8 4.9 58 39-104 4-71 (116)
296 PTZ00357 methyltransferase; Pr 93.9 0.29 6.2E-06 44.9 7.7 71 33-103 703-800 (1072)
297 PF11968 DUF3321: Putative met 93.9 0.1 2.3E-06 40.9 4.4 56 32-104 53-113 (219)
298 COG1255 Uncharacterized protei 93.8 0.33 7.1E-06 34.0 6.3 69 18-101 4-76 (129)
299 COG1867 TRM1 N2,N2-dimethylgua 93.7 0.33 7.1E-06 41.1 7.3 84 31-116 53-141 (380)
300 PF11899 DUF3419: Protein of u 93.5 0.3 6.5E-06 42.0 6.9 50 24-73 29-78 (380)
301 COG1064 AdhP Zn-dependent alco 93.4 0.31 6.6E-06 41.1 6.6 73 25-104 161-238 (339)
302 PF02086 MethyltransfD12: D12 93.3 0.19 4.2E-06 40.5 5.4 59 16-74 6-64 (260)
303 KOG1201 Hydroxysteroid 17-beta 92.4 1.5 3.3E-05 36.2 9.2 85 30-117 37-143 (300)
304 KOG2352 Predicted spermine/spe 92.3 0.072 1.6E-06 46.5 1.6 73 30-103 295-378 (482)
305 COG1748 LYS9 Saccharopine dehy 92.0 0.8 1.7E-05 39.4 7.5 81 32-119 2-92 (389)
306 COG2933 Predicted SAM-dependen 92.0 0.7 1.5E-05 37.5 6.6 71 28-106 209-281 (358)
307 KOG2920 Predicted methyltransf 91.6 0.16 3.4E-06 41.4 2.7 50 16-65 99-152 (282)
308 PF05050 Methyltransf_21: Meth 91.6 0.49 1.1E-05 35.0 5.3 53 36-88 1-61 (167)
309 KOG2352 Predicted spermine/spe 91.5 0.6 1.3E-05 41.0 6.3 71 29-101 46-120 (482)
310 KOG0024 Sorbitol dehydrogenase 91.0 0.7 1.5E-05 38.6 5.8 48 23-70 162-212 (354)
311 COG3510 CmcI Cephalosporin hyd 90.9 0.7 1.5E-05 35.6 5.3 79 8-92 47-131 (237)
312 PRK05867 short chain dehydroge 90.7 2 4.3E-05 34.3 8.4 73 30-104 8-95 (253)
313 PRK07454 short chain dehydroge 90.6 2.8 6.1E-05 33.1 9.2 72 30-104 5-92 (241)
314 PRK07063 short chain dehydroge 90.6 2.6 5.6E-05 33.8 9.0 74 30-103 6-94 (260)
315 PRK03659 glutathione-regulated 90.3 1.1 2.3E-05 41.2 7.1 63 33-105 402-474 (601)
316 PF04378 RsmJ: Ribosomal RNA s 89.8 0.36 7.8E-06 38.8 3.2 74 35-111 62-141 (245)
317 PRK05866 short chain dehydroge 89.7 3 6.4E-05 34.4 8.8 71 31-103 40-125 (293)
318 PRK10669 putative cation:proto 89.7 1.6 3.4E-05 39.7 7.7 64 32-105 418-491 (558)
319 PRK07814 short chain dehydroge 89.5 3 6.4E-05 33.6 8.6 71 30-103 9-95 (263)
320 PRK09496 trkA potassium transp 89.3 1.3 2.8E-05 38.9 6.7 82 15-104 213-306 (453)
321 PLN02668 indole-3-acetate carb 89.2 0.68 1.5E-05 39.8 4.7 20 31-50 64-83 (386)
322 PRK07035 short chain dehydroge 89.0 4 8.7E-05 32.4 8.9 73 30-104 7-94 (252)
323 PRK07062 short chain dehydroge 88.9 4 8.7E-05 32.7 8.9 75 30-104 7-96 (265)
324 PRK05876 short chain dehydroge 88.6 4.1 9E-05 33.1 8.9 73 30-104 5-92 (275)
325 PRK07576 short chain dehydroge 88.5 3.9 8.4E-05 33.0 8.6 71 30-103 8-94 (264)
326 PRK08251 short chain dehydroge 88.4 4.5 9.9E-05 32.0 8.9 71 32-103 3-89 (248)
327 PRK07890 short chain dehydroge 88.4 3.8 8.2E-05 32.6 8.4 72 30-103 4-90 (258)
328 TIGR01963 PHB_DH 3-hydroxybuty 88.3 3.6 7.8E-05 32.6 8.2 68 33-103 3-86 (255)
329 COG0569 TrkA K+ transport syst 88.2 3.5 7.5E-05 32.8 7.9 66 33-104 2-75 (225)
330 PRK05854 short chain dehydroge 88.2 4.8 0.0001 33.5 9.1 74 30-103 13-101 (313)
331 COG4798 Predicted methyltransf 88.1 0.68 1.5E-05 35.8 3.5 83 23-106 41-133 (238)
332 PLN02989 cinnamyl-alcohol dehy 87.9 3.2 7E-05 34.5 8.0 73 30-103 4-85 (325)
333 PRK08945 putative oxoacyl-(acy 87.8 5.3 0.00012 31.6 8.9 73 29-103 10-100 (247)
334 PRK07097 gluconate 5-dehydroge 87.8 5 0.00011 32.3 8.8 73 30-104 9-96 (265)
335 PRK07478 short chain dehydroge 87.8 4.8 0.0001 32.0 8.6 72 31-104 6-92 (254)
336 KOG1562 Spermidine synthase [A 87.7 0.8 1.7E-05 37.7 3.9 75 29-103 120-203 (337)
337 PRK07774 short chain dehydroge 87.3 4.9 0.00011 31.8 8.4 73 30-105 5-93 (250)
338 COG1063 Tdh Threonine dehydrog 87.2 2.3 5E-05 36.1 6.7 46 27-72 165-213 (350)
339 cd08283 FDH_like_1 Glutathione 87.1 2.1 4.6E-05 36.7 6.6 47 25-71 179-228 (386)
340 PRK08589 short chain dehydroge 87.1 5.3 0.00012 32.3 8.6 72 30-104 5-91 (272)
341 KOG2782 Putative SAM dependent 87.1 0.69 1.5E-05 36.4 3.1 57 16-72 29-87 (303)
342 PRK08277 D-mannonate oxidoredu 86.9 5.9 0.00013 32.0 8.8 73 30-104 9-96 (278)
343 PRK07109 short chain dehydroge 86.8 5.7 0.00012 33.4 8.9 73 30-104 7-94 (334)
344 PRK08303 short chain dehydroge 86.6 5.1 0.00011 33.3 8.3 72 30-103 7-103 (305)
345 PLN03209 translocon at the inn 86.5 4.1 8.9E-05 37.1 8.1 79 25-104 74-168 (576)
346 COG2961 ComJ Protein involved 86.4 2.5 5.4E-05 34.0 5.9 73 35-110 93-171 (279)
347 PRK07791 short chain dehydroge 86.3 7 0.00015 32.0 9.0 72 30-103 5-100 (286)
348 PRK03562 glutathione-regulated 86.3 2.7 5.8E-05 38.8 7.0 64 32-103 401-472 (621)
349 PRK07677 short chain dehydroge 86.2 5.8 0.00013 31.6 8.3 70 32-103 2-86 (252)
350 PRK06124 gluconate 5-dehydroge 86.2 6.3 0.00014 31.4 8.5 72 30-104 10-97 (256)
351 PRK08862 short chain dehydroge 86.1 5.7 0.00012 31.3 8.1 72 30-103 4-91 (227)
352 COG5379 BtaA S-adenosylmethion 85.9 2.9 6.3E-05 34.6 6.1 49 26-74 59-107 (414)
353 KOG1253 tRNA methyltransferase 85.6 0.4 8.6E-06 42.1 1.2 85 30-115 109-202 (525)
354 PRK06197 short chain dehydroge 85.5 7.6 0.00016 32.0 8.9 73 30-103 15-103 (306)
355 PRK06139 short chain dehydroge 85.5 6.6 0.00014 33.1 8.5 72 30-103 6-92 (330)
356 PRK12481 2-deoxy-D-gluconate 3 85.3 5.9 0.00013 31.6 7.9 70 30-103 7-91 (251)
357 PRK08267 short chain dehydroge 85.2 5.7 0.00012 31.7 7.8 68 33-104 3-86 (260)
358 PRK12939 short chain dehydroge 85.1 7 0.00015 30.8 8.2 71 30-103 6-92 (250)
359 PRK06949 short chain dehydroge 84.9 7.4 0.00016 30.9 8.4 72 30-104 8-95 (258)
360 PF07669 Eco57I: Eco57I restri 84.9 0.44 9.6E-06 33.1 1.0 15 95-109 2-16 (106)
361 PRK06172 short chain dehydroge 84.9 7.7 0.00017 30.8 8.4 73 30-104 6-93 (253)
362 PRK06720 hypothetical protein; 84.4 13 0.00027 28.1 8.9 73 30-104 15-102 (169)
363 PRK06200 2,3-dihydroxy-2,3-dih 84.3 7.1 0.00015 31.3 8.0 70 30-104 5-89 (263)
364 PRK08213 gluconate 5-dehydroge 84.2 8.7 0.00019 30.6 8.5 72 30-104 11-98 (259)
365 PRK06125 short chain dehydroge 84.0 11 0.00023 30.1 8.9 73 30-103 6-89 (259)
366 PRK08085 gluconate 5-dehydroge 84.0 11 0.00023 30.0 8.9 73 30-104 8-95 (254)
367 PRK07523 gluconate 5-dehydroge 83.8 9.1 0.0002 30.5 8.4 72 30-104 9-96 (255)
368 KOG1098 Putative SAM-dependent 83.7 0.79 1.7E-05 41.5 2.3 35 28-62 42-79 (780)
369 PRK06914 short chain dehydroge 83.7 9.5 0.00021 30.8 8.6 72 31-103 3-89 (280)
370 PRK14106 murD UDP-N-acetylmura 83.6 9.1 0.0002 33.6 9.0 79 30-112 4-85 (450)
371 PRK07533 enoyl-(acyl carrier p 83.6 8 0.00017 31.0 8.0 71 30-103 9-96 (258)
372 PRK08339 short chain dehydroge 83.5 9.6 0.00021 30.7 8.5 73 30-103 7-93 (263)
373 PRK07666 fabG 3-ketoacyl-(acyl 82.9 11 0.00024 29.6 8.5 71 31-104 7-93 (239)
374 PF01234 NNMT_PNMT_TEMT: NNMT/ 82.7 1.4 2.9E-05 35.8 3.1 45 30-74 56-101 (256)
375 KOG1205 Predicted dehydrogenas 82.3 9.6 0.00021 31.4 7.9 75 30-104 11-100 (282)
376 PRK08703 short chain dehydroge 82.3 11 0.00025 29.5 8.4 59 30-90 5-67 (239)
377 PRK08265 short chain dehydroge 82.1 10 0.00022 30.4 8.1 70 30-104 5-89 (261)
378 PRK10310 PTS system galactitol 82.0 3.6 7.8E-05 27.8 4.6 51 37-104 7-59 (94)
379 PRK08340 glucose-1-dehydrogena 82.0 10 0.00023 30.2 8.1 68 33-103 2-84 (259)
380 PRK07326 short chain dehydroge 82.0 10 0.00022 29.6 8.0 70 30-103 5-90 (237)
381 PRK13394 3-hydroxybutyrate deh 81.9 11 0.00023 30.1 8.1 71 30-103 6-92 (262)
382 PRK12823 benD 1,6-dihydroxycyc 81.8 12 0.00026 29.8 8.4 71 30-103 7-92 (260)
383 PF12692 Methyltransf_17: S-ad 81.8 4.7 0.0001 29.8 5.2 45 16-61 15-61 (160)
384 PRK06194 hypothetical protein; 81.5 12 0.00025 30.4 8.4 71 31-104 6-92 (287)
385 PLN02662 cinnamyl-alcohol dehy 81.3 8.8 0.00019 31.7 7.7 72 31-103 4-84 (322)
386 PRK08217 fabG 3-ketoacyl-(acyl 81.2 13 0.00028 29.2 8.4 72 30-104 4-91 (253)
387 COG5459 Predicted rRNA methyla 81.1 1.2 2.6E-05 37.7 2.2 58 31-89 114-174 (484)
388 PF03492 Methyltransf_7: SAM d 81.1 5.9 0.00013 33.5 6.5 22 29-50 15-36 (334)
389 KOG2793 Putative N2,N2-dimethy 80.9 7.5 0.00016 31.4 6.7 40 31-71 87-127 (248)
390 PRK12829 short chain dehydroge 80.9 13 0.00028 29.6 8.3 71 29-104 9-95 (264)
391 KOG2811 Uncharacterized conser 80.8 6.5 0.00014 33.5 6.4 62 31-94 183-249 (420)
392 PRK06113 7-alpha-hydroxysteroi 80.8 13 0.00029 29.5 8.4 72 30-103 10-96 (255)
393 PRK01747 mnmC bifunctional tRN 80.6 7.3 0.00016 36.2 7.5 87 31-117 58-194 (662)
394 COG4301 Uncharacterized conser 80.4 10 0.00022 30.7 7.1 61 29-89 77-143 (321)
395 PRK07102 short chain dehydroge 80.1 13 0.00029 29.2 8.1 69 33-103 3-84 (243)
396 PRK06196 oxidoreductase; Provi 80.1 11 0.00023 31.3 7.8 78 19-104 15-108 (315)
397 PF03721 UDPG_MGDP_dh_N: UDP-g 80.0 2.2 4.9E-05 32.8 3.4 35 35-69 4-40 (185)
398 TIGR03206 benzo_BadH 2-hydroxy 79.8 15 0.00033 28.9 8.3 71 31-104 3-89 (250)
399 TIGR03201 dearomat_had 6-hydro 79.7 8.7 0.00019 32.4 7.2 46 25-70 161-208 (349)
400 PRK09496 trkA potassium transp 79.5 10 0.00023 33.2 7.8 63 33-104 2-74 (453)
401 KOG0022 Alcohol dehydrogenase, 79.5 6.7 0.00014 32.9 6.0 51 21-71 183-236 (375)
402 PRK05872 short chain dehydroge 79.5 15 0.00032 30.2 8.3 72 30-104 8-94 (296)
403 PRK09242 tropinone reductase; 79.4 17 0.00038 28.8 8.6 75 30-104 8-97 (257)
404 cd08254 hydroxyacyl_CoA_DH 6-h 79.2 8.6 0.00019 31.8 7.0 45 26-70 161-207 (338)
405 PRK08643 acetoin reductase; Va 78.9 17 0.00037 28.8 8.4 70 32-104 3-88 (256)
406 PRK05855 short chain dehydroge 78.7 15 0.00033 33.0 8.8 70 31-103 315-400 (582)
407 PLN02819 lysine-ketoglutarate 78.4 16 0.00034 35.9 9.0 86 31-122 569-675 (1042)
408 PRK03369 murD UDP-N-acetylmura 78.2 14 0.00031 32.9 8.4 77 29-113 10-88 (488)
409 TIGR01832 kduD 2-deoxy-D-gluco 78.2 19 0.00041 28.4 8.4 71 30-104 4-89 (248)
410 PRK07984 enoyl-(acyl carrier p 78.2 16 0.00034 29.5 8.0 72 30-104 5-93 (262)
411 PRK08415 enoyl-(acyl carrier p 78.0 17 0.00037 29.5 8.2 72 30-104 4-92 (274)
412 PRK05786 fabG 3-ketoacyl-(acyl 78.0 19 0.00041 28.1 8.3 71 30-104 4-90 (238)
413 PRK05599 hypothetical protein; 77.6 19 0.00042 28.6 8.3 70 33-104 2-86 (246)
414 PRK12429 3-hydroxybutyrate deh 77.6 18 0.00039 28.6 8.2 70 31-103 4-89 (258)
415 cd05188 MDR Medium chain reduc 77.6 11 0.00025 29.7 7.0 43 28-70 132-176 (271)
416 PRK06181 short chain dehydroge 77.5 19 0.0004 28.7 8.3 69 32-103 2-86 (263)
417 PRK07904 short chain dehydroge 77.5 16 0.00035 29.2 7.9 76 29-105 6-97 (253)
418 PLN02780 ketoreductase/ oxidor 77.3 15 0.00033 30.7 7.9 61 30-90 52-115 (320)
419 PRK06114 short chain dehydroge 77.3 23 0.0005 28.1 8.7 72 30-104 7-95 (254)
420 PRK09072 short chain dehydroge 77.2 20 0.00042 28.7 8.3 71 31-104 5-89 (263)
421 PRK12826 3-ketoacyl-(acyl-carr 77.1 21 0.00045 28.0 8.4 72 30-104 5-92 (251)
422 PRK01438 murD UDP-N-acetylmura 76.9 29 0.00064 30.7 10.0 77 30-111 15-94 (480)
423 PRK11524 putative methyltransf 76.8 1.3 2.8E-05 36.5 1.3 29 79-107 7-39 (284)
424 PRK06079 enoyl-(acyl carrier p 76.6 15 0.00034 29.2 7.5 70 30-104 6-92 (252)
425 TIGR01081 mpl UDP-N-acetylmura 75.9 5.5 0.00012 35.1 5.0 70 38-113 9-78 (448)
426 PRK07231 fabG 3-ketoacyl-(acyl 75.8 24 0.00051 27.7 8.4 71 31-104 5-90 (251)
427 PRK05653 fabG 3-ketoacyl-(acyl 75.6 24 0.00051 27.5 8.3 70 31-103 5-90 (246)
428 PRK08690 enoyl-(acyl carrier p 75.5 19 0.00041 28.9 7.8 72 30-104 5-93 (261)
429 KOG1209 1-Acyl dihydroxyaceton 75.2 38 0.00083 27.0 8.8 66 30-102 6-88 (289)
430 PRK12548 shikimate 5-dehydroge 75.0 30 0.00066 28.5 8.9 72 30-105 125-209 (289)
431 PRK08594 enoyl-(acyl carrier p 75.0 19 0.00042 28.8 7.7 74 30-104 6-96 (257)
432 PRK05650 short chain dehydroge 74.9 23 0.00051 28.4 8.2 68 33-103 2-85 (270)
433 PRK07201 short chain dehydroge 74.8 21 0.00046 32.9 8.8 71 31-104 371-457 (657)
434 PRK13699 putative methylase; P 74.5 1.6 3.4E-05 34.8 1.2 27 81-107 2-32 (227)
435 PRK09291 short chain dehydroge 74.5 22 0.00047 28.1 7.9 69 32-103 3-81 (257)
436 KOG1208 Dehydrogenases with di 74.4 35 0.00077 28.6 9.2 73 30-102 34-121 (314)
437 COG0771 MurD UDP-N-acetylmuram 74.3 13 0.00028 32.9 6.7 82 31-116 7-90 (448)
438 cd01065 NAD_bind_Shikimate_DH 74.1 31 0.00067 25.0 9.2 69 30-105 18-91 (155)
439 PF04072 LCM: Leucine carboxyl 74.1 13 0.00027 28.4 6.1 60 32-91 80-142 (183)
440 TIGR01082 murC UDP-N-acetylmur 74.0 6.9 0.00015 34.4 5.2 64 43-114 14-77 (448)
441 PRK09186 flagellin modificatio 73.9 27 0.00058 27.6 8.2 73 30-103 3-91 (256)
442 PRK12743 oxidoreductase; Provi 73.7 29 0.00063 27.6 8.4 70 31-103 2-88 (256)
443 KOG0725 Reductases with broad 73.6 38 0.00083 27.7 9.1 74 30-103 7-97 (270)
444 PRK06935 2-deoxy-D-gluconate 3 73.5 25 0.00054 28.0 8.0 72 30-104 14-100 (258)
445 TIGR02822 adh_fam_2 zinc-bindi 73.5 17 0.00037 30.4 7.3 48 24-71 159-208 (329)
446 PRK13656 trans-2-enoyl-CoA red 73.5 51 0.0011 28.7 10.0 75 29-106 39-142 (398)
447 TIGR02818 adh_III_F_hyde S-(hy 73.3 16 0.00036 31.0 7.2 47 24-70 179-228 (368)
448 PRK12384 sorbitol-6-phosphate 73.0 30 0.00066 27.4 8.4 71 32-103 3-89 (259)
449 TIGR02632 RhaD_aldol-ADH rhamn 72.9 28 0.00061 32.6 9.0 73 30-104 413-502 (676)
450 TIGR01289 LPOR light-dependent 72.6 35 0.00076 28.3 8.9 72 31-104 3-90 (314)
451 PRK06505 enoyl-(acyl carrier p 72.6 27 0.00058 28.3 8.0 71 30-103 6-93 (271)
452 PRK05875 short chain dehydroge 72.6 33 0.00071 27.5 8.6 73 30-103 6-94 (276)
453 PRK08416 7-alpha-hydroxysteroi 72.3 34 0.00075 27.2 8.6 72 30-103 7-95 (260)
454 PRK07889 enoyl-(acyl carrier p 72.3 17 0.00038 29.0 6.8 69 30-103 6-93 (256)
455 PRK07024 short chain dehydroge 72.0 25 0.00055 27.9 7.7 68 32-103 3-86 (257)
456 COG4017 Uncharacterized protei 72.0 12 0.00026 29.0 5.2 39 29-67 43-82 (254)
457 PLN02166 dTDP-glucose 4,6-dehy 71.9 19 0.0004 31.7 7.3 67 30-101 119-190 (436)
458 KOG3201 Uncharacterized conser 71.8 2 4.4E-05 32.3 1.1 58 18-75 17-77 (201)
459 COG1062 AdhC Zn-dependent alco 71.7 17 0.00036 30.9 6.5 51 21-71 176-229 (366)
460 PRK06138 short chain dehydroge 70.9 33 0.00071 27.0 8.1 71 30-104 4-90 (252)
461 PRK15181 Vi polysaccharide bio 70.7 15 0.00033 31.0 6.4 69 31-101 15-96 (348)
462 PRK06701 short chain dehydroge 70.5 29 0.00062 28.5 7.8 72 30-103 45-132 (290)
463 PRK01710 murD UDP-N-acetylmura 70.2 11 0.00024 33.3 5.6 81 31-115 14-97 (458)
464 PRK07417 arogenate dehydrogena 69.8 15 0.00032 30.1 5.9 74 34-116 3-78 (279)
465 KOG3350 Uncharacterized conser 69.8 48 0.001 25.5 7.9 88 8-108 50-148 (217)
466 TIGR01470 cysG_Nterm siroheme 69.7 29 0.00062 27.1 7.2 68 30-103 8-77 (205)
467 PRK07792 fabG 3-ketoacyl-(acyl 69.6 35 0.00076 28.2 8.2 72 30-103 11-97 (306)
468 PLN02253 xanthoxin dehydrogena 69.3 31 0.00067 27.8 7.8 70 30-103 17-102 (280)
469 PF02737 3HCDH_N: 3-hydroxyacy 69.2 12 0.00026 28.5 4.9 41 34-74 2-44 (180)
470 PRK08324 short chain dehydroge 69.1 28 0.00062 32.5 8.2 72 30-104 421-507 (681)
471 TIGR00027 mthyl_TIGR00027 meth 69.1 30 0.00065 28.1 7.5 58 31-89 82-142 (260)
472 PF00106 adh_short: short chai 68.9 32 0.00069 25.0 7.2 70 33-104 2-89 (167)
473 cd08281 liver_ADH_like1 Zinc-d 68.9 21 0.00045 30.4 6.9 47 24-70 185-234 (371)
474 PRK12748 3-ketoacyl-(acyl-carr 68.7 33 0.00071 27.3 7.7 70 31-103 5-103 (256)
475 PRK07453 protochlorophyllide o 68.6 37 0.00081 28.1 8.3 72 30-103 5-91 (322)
476 KOG2798 Putative trehalase [Ca 68.5 7 0.00015 32.7 3.6 49 17-65 133-185 (369)
477 PRK08159 enoyl-(acyl carrier p 68.3 37 0.0008 27.5 8.0 72 30-104 9-97 (272)
478 PRK06603 enoyl-(acyl carrier p 67.8 42 0.00092 26.8 8.2 72 30-104 7-95 (260)
479 PRK08226 short chain dehydroge 67.7 40 0.00088 26.8 8.1 70 30-103 5-90 (263)
480 TIGR03451 mycoS_dep_FDH mycoth 67.6 21 0.00046 30.1 6.7 46 25-70 171-219 (358)
481 PRK07067 sorbitol dehydrogenas 67.4 37 0.00081 26.9 7.8 67 31-103 6-88 (257)
482 PRK07074 short chain dehydroge 67.3 39 0.00084 26.8 7.8 68 32-103 3-85 (257)
483 PRK09424 pntA NAD(P) transhydr 67.2 17 0.00037 32.7 6.1 44 28-71 162-207 (509)
484 cd05563 PTS_IIB_ascorbate PTS_ 67.0 22 0.00049 23.1 5.4 51 37-104 4-54 (86)
485 COG4221 Short-chain alcohol de 66.9 48 0.001 26.7 7.9 70 30-103 5-89 (246)
486 PRK08063 enoyl-(acyl carrier p 66.8 51 0.0011 25.8 8.4 70 31-103 4-90 (250)
487 PRK00141 murD UDP-N-acetylmura 66.7 46 0.00099 29.6 8.8 77 30-113 14-92 (473)
488 TIGR01500 sepiapter_red sepiap 66.5 46 0.001 26.4 8.1 59 33-91 2-67 (256)
489 PF07101 DUF1363: Protein of u 66.5 2.1 4.6E-05 28.8 0.2 16 35-50 7-22 (124)
490 cd00401 AdoHcyase S-adenosyl-L 66.3 33 0.00072 30.0 7.6 57 14-70 184-243 (413)
491 TIGR00507 aroE shikimate 5-deh 66.3 70 0.0015 26.0 9.6 70 29-105 115-188 (270)
492 PRK12824 acetoacetyl-CoA reduc 66.3 49 0.0011 25.8 8.2 69 33-104 4-89 (245)
493 TIGR02415 23BDH acetoin reduct 66.3 49 0.0011 26.0 8.2 69 33-104 2-86 (254)
494 PRK06484 short chain dehydroge 66.2 39 0.00085 30.1 8.4 68 31-103 269-351 (520)
495 PRK06179 short chain dehydroge 66.2 21 0.00045 28.6 6.1 63 31-104 4-82 (270)
496 PRK06997 enoyl-(acyl carrier p 66.2 36 0.00078 27.3 7.5 71 30-103 5-92 (260)
497 PRK12744 short chain dehydroge 66.0 50 0.0011 26.2 8.2 70 31-103 8-97 (257)
498 PRK06180 short chain dehydroge 65.8 35 0.00077 27.5 7.4 68 31-103 4-86 (277)
499 COG1743 Adenine-specific DNA m 65.8 9.7 0.00021 35.7 4.3 44 30-73 90-133 (875)
500 cd08255 2-desacetyl-2-hydroxye 65.4 29 0.00063 27.8 6.8 47 25-71 92-141 (277)
No 1
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-53 Score=335.50 Aligned_cols=223 Identities=45% Similarity=0.664 Sum_probs=204.9
Q ss_pred ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
++++|++||||++|++++++|++.+++.+++.|||||||.|++|..|++.+.+|+|+|+|+.+++.+++.+... +|+
T Consensus 2 ~k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~ 78 (259)
T COG0030 2 FRPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNL 78 (259)
T ss_pred CCCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cce
Confidence 46679999999999999999999999999999999999999999999999999999999999999999998632 689
Q ss_pred EEEEcCCCCCCCC---CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeee
Q 047897 82 NVISKDALKTEFP---QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVAD 158 (232)
Q Consensus 82 ~~~~~D~~~~~~~---~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~ 158 (232)
+++++|+++.+++ .++.|++|+||+++++++.+++........+++|+|+|+|+|++++||++.|+++++.++++++
T Consensus 79 ~vi~~DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~A~pgsk~Yg~LsV~~q~~~~ 158 (259)
T COG0030 79 TVINGDALKFDFPSLAQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYAD 158 (259)
T ss_pred EEEeCchhcCcchhhcCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHhCCCCCcccchhhhhhhheEE
Confidence 9999999999988 6899999999999999999999988777799999999999999999999999999999999999
Q ss_pred eEEEEEecCCCcccCCCccEEEEEEEeCCCCC--CCCHHHHHHHHHHhhcCCCchHHhhcCChHHHHHHHH
Q 047897 159 VEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIP--DVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLR 227 (232)
Q Consensus 159 ~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~rrk~l~~~~~~~~~~~~~~~ 227 (232)
++.++++|+++|+|+|+|+|+++.+.+++..+ ..+.+.|..+++.+|.+|||+++|+++..-.+.+.|.
T Consensus 159 v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~~~d~~~~~~~~~~~F~~RRKtl~n~l~~~~~~~~~l~ 229 (259)
T COG0030 159 VEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSPVKDEEKFFKFVKAAFSQRRKTLRNNLKNLFGLEEVLE 229 (259)
T ss_pred EEEEEEEChhhCCCCCCccEEEEEEEeCCCCCCcccCHHHHHHHHHHHHhhhhHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999976543 3578999999999999999999999976433344443
No 2
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=100.00 E-value=4.1e-51 Score=334.46 Aligned_cols=218 Identities=59% Similarity=0.880 Sum_probs=204.7
Q ss_pred ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
++++|++|||||+|+.+++.|++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...+..+++
T Consensus 8 ~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v 87 (294)
T PTZ00338 8 MVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKL 87 (294)
T ss_pred cCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcE
Confidence 47899999999999999999999999999999999999999999999998889999999999999999999876644689
Q ss_pred EEEEcCCCCCCCCCcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEE
Q 047897 82 NVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEF 161 (232)
Q Consensus 82 ~~~~~D~~~~~~~~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~ 161 (232)
+++++|+++.+.+.+|+|++|+||+++++++.+++.....+..+++|+|+|+|+|++++||++.|+.+++.++.+++++.
T Consensus 88 ~ii~~Dal~~~~~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~A~pg~k~y~~LSv~~q~~~~~~~ 167 (294)
T PTZ00338 88 EVIEGDALKTEFPYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLLAQPGDELYCRLSVNTQLLCRVTH 167 (294)
T ss_pred EEEECCHhhhcccccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHhcCCCCcccCHHHHHHHHHhceEE
Confidence 99999999988888999999999999999999999877788899999999999999999999999999999999999999
Q ss_pred EEEecCCCcccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCCh
Q 047897 162 VMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQK 219 (232)
Q Consensus 162 ~~~~~~~~f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~~ 219 (232)
++++|++.|.|+|+|+|+|+.+.|++..+..+++.|..+++.+|.+|||+|+++|++.
T Consensus 168 ~~~V~~~~F~P~PkVdSavv~l~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~~~l~~~ 225 (294)
T PTZ00338 168 LMKVSKNSFNPPPKVESSVVRIEPKNPPPDVDFEEWDGLLRICFSRKNKTLSAIFKTK 225 (294)
T ss_pred EEEeCchhCCCCCCcEEEEEEEEECCCCCCcCHHHHHHHHHHHHhhccHHHHHHhCcc
Confidence 9999999999999999999999998765556788899999999999999999998763
No 3
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=100.00 E-value=3.7e-46 Score=304.16 Aligned_cols=223 Identities=40% Similarity=0.609 Sum_probs=202.0
Q ss_pred ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
++++|++||||++|+.+++.+++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+++++.+++++.. +++
T Consensus 14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v 89 (272)
T PRK00274 14 HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNL 89 (272)
T ss_pred CCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----Cce
Confidence 4679999999999999999999999988999999999999999999999777999999999999999988743 579
Q ss_pred EEEEcCCCCCCCCC--cceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeee
Q 047897 82 NVISKDALKTEFPQ--FDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADV 159 (232)
Q Consensus 82 ~~~~~D~~~~~~~~--~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~ 159 (232)
+++++|+.+++.+. +|.|++|+||+++++++.+++.....+..+++++|+|+|+|++++||++.|+.++++++.++++
T Consensus 90 ~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~a~pg~~~y~~lSv~~~~~~~~ 169 (272)
T PRK00274 90 TIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPGSKAYGRLSVLVQYYCDV 169 (272)
T ss_pred EEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHcCCCCCccccHHHHHHHHHcce
Confidence 99999999988765 4899999999999999999998776788899999999999999999999999999999999999
Q ss_pred EEEEEecCCCcccCCCccEEEEEEEeCCCC--CCCCHHHHHHHHHHhhcCCCchHHhhcCC----hHHHHHHHHh
Q 047897 160 EFVMDVSKRDFLPCPKVDSSVVIIRPKAEI--PDVNLDEWRAFTRTCFSKKNKTLGATFKQ----KKKVIELLRL 228 (232)
Q Consensus 160 ~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~rrk~l~~~~~~----~~~~~~~~~~ 228 (232)
+.+++++++.|.|+|+|+|+++.+.+++.. ...+.+.|..+++.+|.+|||++.++++. .+.+.++|+.
T Consensus 170 ~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~~~l~~ 244 (272)
T PRK00274 170 EKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVPVKDEELFFRVVKAAFAQRRKTLRNNLKNLFGSKEKLEEALEA 244 (272)
T ss_pred EEEEEeChhhCCCCCCceEEEEEEEECCCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHhhccchHHHHHHHHH
Confidence 999999999999999999999999997643 45677889999999999999999999875 2344555553
No 4
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=100.00 E-value=2.1e-45 Score=286.45 Aligned_cols=224 Identities=52% Similarity=0.808 Sum_probs=213.4
Q ss_pred ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
+.++|.+|||++.++.+++.|++.+++++++.|||+|+|||.+|..+++.+++|+|+|+|+.|+....++........++
T Consensus 30 ~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kL 109 (315)
T KOG0820|consen 30 SKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKL 109 (315)
T ss_pred cccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCcccee
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999876666789
Q ss_pred EEEEcCCCCCCCCCcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEE
Q 047897 82 NVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEF 161 (232)
Q Consensus 82 ~~~~~D~~~~~~~~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~ 161 (232)
++++||+++.+++.||.+|+|+||+++++.+++++.+...+..+++|+|.|++.|+++.||...|.++++.+|.+..++.
T Consensus 110 qV~~gD~lK~d~P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~ 189 (315)
T KOG0820|consen 110 QVLHGDFLKTDLPRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTH 189 (315)
T ss_pred eEEecccccCCCcccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCChHHHHHHH
Q 047897 162 VMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226 (232)
Q Consensus 162 ~~~~~~~~f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~~~~~~~~~ 226 (232)
+++++++.|.|+|+|+|++++++++...+..++.+|..+++.+|.+++|++...++..+ +.+.+
T Consensus 190 i~KVgknnFrPpPkVessvVriepk~P~pp~~~~ewdg~lri~F~rkNktl~a~fk~~~-v~~~i 253 (315)
T KOG0820|consen 190 IMKVGKNNFRPPPKVESSVVRIEPKNPRPPVDFHEWDGLLRICFLRKNKTLMAPFKSSS-VLQKI 253 (315)
T ss_pred heeecccccCCCCccccceeEeecCCCCCccchHHHHHHHHHHHHHHhHHhhcchhhhH-HHHHh
Confidence 99999999999999999999999988888899999999999999999999999998876 44443
No 5
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=100.00 E-value=5.4e-45 Score=295.28 Aligned_cols=212 Identities=43% Similarity=0.659 Sum_probs=195.0
Q ss_pred ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
++++|++||||++|+++++.+++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++.. . +++
T Consensus 1 ~~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~-~~v 77 (258)
T PRK14896 1 IRMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A-GNV 77 (258)
T ss_pred CCCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C-CCE
Confidence 5789999999999999999999999988999999999999999999999888999999999999999998864 2 579
Q ss_pred EEEEcCCCCCCCCCcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEE
Q 047897 82 NVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEF 161 (232)
Q Consensus 82 ~~~~~D~~~~~~~~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~ 161 (232)
+++++|+++.+++.+|.|++|+||+++++++.+++. .....+.+++|+|+|+|++++||++.|+.+++..+.+++.+.
T Consensus 78 ~ii~~D~~~~~~~~~d~Vv~NlPy~i~s~~~~~l~~--~~~~~~~l~~q~e~A~rl~a~~g~~~yg~lsv~~~~~~~~~~ 155 (258)
T PRK14896 78 EIIEGDALKVDLPEFNKVVSNLPYQISSPITFKLLK--HGFEPAVLMYQKEFAERMVAKPGTKEYGRLSVMVQYYADVEI 155 (258)
T ss_pred EEEEeccccCCchhceEEEEcCCcccCcHHHHHHHh--hccceeEEEeeHHHHHHhcCCCCCccccHHHHHHHHHeeeEE
Confidence 999999999888889999999999999999988875 445668999999999999999999999999999999999999
Q ss_pred EEEecCCCcccCCCccEEEEEEEeCCCC-CCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897 162 VMDVSKRDFLPCPKVDSSVVIIRPKAEI-PDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218 (232)
Q Consensus 162 ~~~~~~~~f~P~p~v~s~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~rrk~l~~~~~~ 218 (232)
+..+++..|.|+|+|+|+++.+.+++.. ...+.+.|..+++.+|.+|||+++++++.
T Consensus 156 ~~~v~~~~F~P~PkV~s~vi~l~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~ 213 (258)
T PRK14896 156 VEKVPPGAFSPKPKVDSAVVRLTPREPKYEVYDEDFFDDFVKALFQHRRKTLRNALKN 213 (258)
T ss_pred EEEeChHhCCCCCCceEEEEEEEECCCCCCCchHHHHHHHHHHHHccccHHHHHHHhh
Confidence 9999999999999999999999998732 23456779999999999999999999975
No 6
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=100.00 E-value=6.9e-45 Score=294.24 Aligned_cols=213 Identities=45% Similarity=0.682 Sum_probs=197.6
Q ss_pred ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
++++|++||||+.|+++++.+++.++..++++|||||||+|.+|..+++.+.+|+++|+|+.+++.+++++.. .+++
T Consensus 1 ~~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v 77 (253)
T TIGR00755 1 FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERL 77 (253)
T ss_pred CCCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcE
Confidence 5789999999999999999999999988899999999999999999999888899999999999999988754 2579
Q ss_pred EEEEcCCCCCCCCCcc---eeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeee
Q 047897 82 NVISKDALKTEFPQFD---LVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVAD 158 (232)
Q Consensus 82 ~~~~~D~~~~~~~~~D---~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~ 158 (232)
+++++|+++.+.+.+| .|++|+||+++++++.+++. ......+++++|+|+|+|+++.||++.|+.+++.++.+++
T Consensus 78 ~v~~~D~~~~~~~~~d~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~a~pg~~~y~~lsv~~~~~~~ 156 (253)
T TIGR00755 78 EVIEGDALKVDLPDFPKQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLTAKPGSKDYGRLSVLVQYFAN 156 (253)
T ss_pred EEEECchhcCChhHcCCcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHccCCCCCcccHHHHHHHHHcc
Confidence 9999999998877777 99999999999999999986 4567789999999999999999999999999999999999
Q ss_pred eEEEEEecCCCcccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897 159 VEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218 (232)
Q Consensus 159 ~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~ 218 (232)
++.++.++++.|+|+|+|+|+++.+.+++.....+.+.|..+++.+|.+|||+++++++.
T Consensus 157 ~~~~~~v~~~~F~P~PkVds~vv~l~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~ 216 (253)
T TIGR00755 157 VEIVFKVPPSAFYPPPKVDSAVVRLIPREQFPVKDIALFEKLLKAAFSQRRKTLRNNLKQ 216 (253)
T ss_pred eEEEEEEchhhCcCCCCeeEEEEEEEECCCCCcccHHHHHHHHHHHHccchHHHHHHHhh
Confidence 999999999999999999999999999876555677889999999999999999999875
No 7
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=100.00 E-value=1.1e-42 Score=282.34 Aligned_cols=214 Identities=40% Similarity=0.578 Sum_probs=191.8
Q ss_pred ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
.+++|++||||++|+++++.|++.+++.+++.|||||+|+|.+|..+++.+.+|+++|+|+.+++.+++++.. .+++
T Consensus 2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~---~~~~ 78 (262)
T PF00398_consen 2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS---NPNV 78 (262)
T ss_dssp -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT---CSSE
T ss_pred CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh---cccc
Confidence 3689999999999999999999999999999999999999999999999889999999999999999998863 2689
Q ss_pred EEEEcCCCCCCCCC-----cceeecccCcccchHHHHHHhc-CCCCccceEehhHHHHHHHHhcCCCCCcccchhheeee
Q 047897 82 NVISKDALKTEFPQ-----FDLVVANIPYGISSPLVAKLVY-GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKL 155 (232)
Q Consensus 82 ~~~~~D~~~~~~~~-----~D~Vi~n~p~~~~~~~l~~~~~-~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~ 155 (232)
+++++|+++++... ...|++|+||+++++++.+++. .......+.+++|+|+++|++++||++.|+.+++.++.
T Consensus 79 ~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a~pg~~~~~~lsv~~q~ 158 (262)
T PF00398_consen 79 EVINGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLAKPGSKRYSRLSVLAQA 158 (262)
T ss_dssp EEEES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHTSTTSTTCSHHHHHHHH
T ss_pred eeeecchhccccHHhhcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccCCCCCCccchhhhhhhh
Confidence 99999999987653 4589999999999999999987 34446889999999999999999999999999999999
Q ss_pred eeeeEEEEEecCCCcccCCCccEEEEEEEeCCCC--CCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897 156 VADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEI--PDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218 (232)
Q Consensus 156 ~~~~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~rrk~l~~~~~~ 218 (232)
+++++.+..++++.|+|+|+|+|+++.+.|++.. +..+.+.|..+++.+|.+|||++.++++.
T Consensus 159 ~~~i~~l~~v~~~~F~P~PkVds~vv~l~p~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~L~~ 223 (262)
T PF00398_consen 159 FFDIKLLFKVPPSCFYPPPKVDSAVVRLTPKENPLIPPEDMDAFEYFVRQLFSQRRKTLRNSLKS 223 (262)
T ss_dssp HEEEEEEEEE-GGGEESSSSS-EEEEEEEE-SSCSS-CSHHHHHHHHHHHHHTTTTSBHHHHTTC
T ss_pred hhceeEecccCCccccCCCCCceEEEEEEECCCCCCcccCHHHHHHHHHHHHhCcchHHHHHHhh
Confidence 9999999999999999999999999999999875 35678899999999999999999999985
No 8
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=100.00 E-value=6.9e-35 Score=222.28 Aligned_cols=166 Identities=47% Similarity=0.724 Sum_probs=153.7
Q ss_pred HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Cc
Q 047897 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QF 96 (232)
Q Consensus 19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~ 96 (232)
++.+++.+++.++++|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++... ++++++++|+++++.+ .+
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCC
Confidence 577888888888999999999999999999998889999999999999999998642 5799999999998765 48
Q ss_pred ceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEEEEEecCCCcccCCCc
Q 047897 97 DLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKV 176 (232)
Q Consensus 97 D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~P~p~v 176 (232)
|.|++|+||+++++++.+++........+.+++|+|+++|++++||++.|+.++++++.+++++.+++++++.|+|+|+|
T Consensus 79 d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~~~~y~~lsv~~~~~~~~~~~~~v~~~~F~P~PkV 158 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYFDVKILFKVPPEAFRPPPKV 158 (169)
T ss_pred CEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCCCCcccHHHHHHHHHeeEEEEEEEChhhCCCCCCc
Confidence 99999999999999999999876666889999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCC
Q 047897 177 DSSVVIIRPKA 187 (232)
Q Consensus 177 ~s~~~~~~~~~ 187 (232)
+|+++.+++++
T Consensus 159 ~s~~~~~~~~~ 169 (169)
T smart00650 159 DSAVVRLERRP 169 (169)
T ss_pred eEEEEEEEECc
Confidence 99999999863
No 9
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.94 E-value=5.3e-26 Score=173.08 Aligned_cols=212 Identities=25% Similarity=0.393 Sum_probs=181.4
Q ss_pred cccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 3 FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 3 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
+.+|-++||||.|.++.++|+..++.-.++-|+|||+|+|++|..+++ ...++..+|+|+.+++-++...+... .++
T Consensus 23 qA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~ 100 (326)
T KOG0821|consen 23 QAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKL 100 (326)
T ss_pred HHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cce
Confidence 567889999999999999999999887888999999999999999998 45799999999999988877666433 589
Q ss_pred EEEEcCCCCCCCC---------C-----c-ceeecccCcccchHHHHHHhcCC----CC----ccceEehhHHHHHHHHh
Q 047897 82 NVISKDALKTEFP---------Q-----F-DLVVANIPYGISSPLVAKLVYGT----KS----FRSATLLLQKEFARRLL 138 (232)
Q Consensus 82 ~~~~~D~~~~~~~---------~-----~-D~Vi~n~p~~~~~~~l~~~~~~~----~~----~~~~~~~~q~e~~~rl~ 138 (232)
.+.++|++.+..+ + . -.||+|+||++++|++.+++... .. -..+.+.+|.|+|+|+.
T Consensus 101 ~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~EVAeRlC 180 (326)
T KOG0821|consen 101 RIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLC 180 (326)
T ss_pred EEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHHHHHHhc
Confidence 9999999876432 1 1 26999999999999998887532 22 23567889999999999
Q ss_pred cCCCCCcccchhheeeeeeeeEEEEEecCCCcccCCCccEEEEEEEeCCCCC-CCCHHHHHHHHHHhhcCCCchHHhhc
Q 047897 139 ASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIP-DVNLDEWRAFTRTCFSKKNKTLGATF 216 (232)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~rrk~l~~~~ 216 (232)
++.|+...+++|+..|.+++...++.+|-++|.|.|.|+-+|+++.|..... ...|+..+++++..|..|.|....-+
T Consensus 181 aP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~~~F~lvEkV~R~vF~~RQKY~~rGl 259 (326)
T KOG0821|consen 181 APTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIEQPFKLVEKVVRNVFQFRQKYCHRGL 259 (326)
T ss_pred ccccccchhhHHHHHHHhcCceEEEEecCccccCCCcceeeeEEeeecCCccccCCHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999877654 56788899999999999987654433
No 10
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.2e-15 Score=112.30 Aligned_cols=137 Identities=23% Similarity=0.260 Sum_probs=101.9
Q ss_pred ccccCCCcccccCCHHHHHHHHHhcC---CCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCC
Q 047897 2 IFFHKSKGQHILTNQRVLDSIVRKSS---INPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGF 77 (232)
Q Consensus 2 ~~~~k~~gq~fl~~~~~~~~i~~~~~---~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~ 77 (232)
.+++-.+-| |.++..++..|+..+. .-.|..|+|+|||+|.++...+-.+ .+|+|+|+|+++++.+++|....+
T Consensus 15 ~~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~- 92 (198)
T COG2263 15 PNPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL- 92 (198)
T ss_pred CCCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-
Confidence 345556666 8889999999887653 3357789999999999999988854 899999999999999999998843
Q ss_pred CccEEEEEcCCCCCCCCCcceeecccCcccc-----hHHHHHHhcCCCCccceEehhHHHHHHHHhcCCC
Q 047897 78 HDRLNVISKDALKTEFPQFDLVVANIPYGIS-----SPLVAKLVYGTKSFRSATLLLQKEFARRLLASPG 142 (232)
Q Consensus 78 ~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~-----~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g 142 (232)
++++++.+|+.++.. .+|.++.||||+.. .+.+.+.++.........-.--.++.++....-|
T Consensus 93 -g~v~f~~~dv~~~~~-~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G 160 (198)
T COG2263 93 -GDVEFVVADVSDFRG-KFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFAADLG 160 (198)
T ss_pred -CceEEEEcchhhcCC-ccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHHHhcC
Confidence 689999999988863 67899999999865 4556665554433332222223455555555444
No 11
>PHA03412 putative methyltransferase; Provisional
Probab=99.66 E-value=4.6e-16 Score=122.16 Aligned_cols=97 Identities=21% Similarity=0.411 Sum_probs=80.1
Q ss_pred ccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-----CCeEEEEEcCHHHHHHHHHHHhhcCCC
Q 047897 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-----SKKVHAIEIDERMVEILNRRAADSGFH 78 (232)
Q Consensus 4 ~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~ 78 (232)
-+++.|| |.+++.+++.++... ..+.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++.
T Consensus 26 ~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------ 96 (241)
T PHA03412 26 NNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------ 96 (241)
T ss_pred ccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------
Confidence 3678888 888889988876332 24679999999999999988762 458999999999999999886
Q ss_pred ccEEEEEcCCCCCCCC-CcceeecccCcccch
Q 047897 79 DRLNVISKDALKTEFP-QFDLVVANIPYGISS 109 (232)
Q Consensus 79 ~~~~~~~~D~~~~~~~-~~D~Vi~n~p~~~~~ 109 (232)
.++.++++|+...+.. +||+||+||||....
T Consensus 97 ~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 97 PEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred cCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 3588999999876544 899999999998754
No 12
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.65 E-value=4.3e-16 Score=123.28 Aligned_cols=100 Identities=27% Similarity=0.421 Sum_probs=82.6
Q ss_pred cccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc
Q 047897 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86 (232)
Q Consensus 9 gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 86 (232)
|.+|-+|--++...+ ......+|||+|||+|.++..++++ ..+++|||+++++++.|+++...++++++++++++
T Consensus 26 ~~~~~~DaiLL~~~~---~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~ 102 (248)
T COG4123 26 GFRYGTDAILLAAFA---PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA 102 (248)
T ss_pred ccccccHHHHHHhhc---ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehh
Confidence 445556555555444 3345789999999999999999984 38999999999999999999999999999999999
Q ss_pred CCCCCCC----CCcceeecccCcccchHH
Q 047897 87 DALKTEF----PQFDLVVANIPYGISSPL 111 (232)
Q Consensus 87 D~~~~~~----~~~D~Vi~n~p~~~~~~~ 111 (232)
|+.++.. .+||+|+|||||+.....
T Consensus 103 Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~ 131 (248)
T COG4123 103 DIKEFLKALVFASFDLIICNPPYFKQGSR 131 (248)
T ss_pred hHHHhhhcccccccCEEEeCCCCCCCccc
Confidence 9988753 269999999999876443
No 13
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.6e-15 Score=116.64 Aligned_cols=94 Identities=26% Similarity=0.395 Sum_probs=83.6
Q ss_pred CCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc
Q 047897 7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86 (232)
Q Consensus 7 ~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 86 (232)
..||.. ..|.+...|++.++++++++|||||||+|+.+..+++...+|+++|.++.+.+.|++++...|+ .|+.++++
T Consensus 50 ~~gqti-s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~g 127 (209)
T COG2518 50 GCGQTI-SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY-ENVTVRHG 127 (209)
T ss_pred CCCcee-cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEEC
Confidence 356744 4589999999999999999999999999999999999888999999999999999999999998 47999999
Q ss_pred CCCCCCC--CCcceeecc
Q 047897 87 DALKTEF--PQFDLVVAN 102 (232)
Q Consensus 87 D~~~~~~--~~~D~Vi~n 102 (232)
|...-.. .+||.|+..
T Consensus 128 DG~~G~~~~aPyD~I~Vt 145 (209)
T COG2518 128 DGSKGWPEEAPYDRIIVT 145 (209)
T ss_pred CcccCCCCCCCcCEEEEe
Confidence 9987532 489988864
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.58 E-value=1.7e-14 Score=102.11 Aligned_cols=74 Identities=36% Similarity=0.680 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC-CCCCC-CCcceeeccc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA-LKTEF-PQFDLVVANI 103 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~-~~~~~-~~~D~Vi~n~ 103 (232)
|+.+|||+|||+|.++..+++ .+.+|+|+|+|+++++.+++++...+..++++++++|+ ..... ++||+|+++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 578999999999999999999 88999999999999999999996666668999999999 44444 3799999865
No 15
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=7.8e-14 Score=109.46 Aligned_cols=96 Identities=19% Similarity=0.291 Sum_probs=80.5
Q ss_pred CcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE
Q 047897 8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84 (232)
Q Consensus 8 ~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 84 (232)
.|+.+ ..+.+.+.+++.+++.++++|||+|||+|..+..+++. ..+|+++|+++++++.+++++...++.++++++
T Consensus 51 ~~~~~-~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~ 129 (205)
T PRK13944 51 AGATI-SAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVY 129 (205)
T ss_pred CCCEe-chHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 34444 34788999999999889999999999999999888873 469999999999999999999888775579999
Q ss_pred EcCCCCCCC--CCcceeecccC
Q 047897 85 SKDALKTEF--PQFDLVVANIP 104 (232)
Q Consensus 85 ~~D~~~~~~--~~~D~Vi~n~p 104 (232)
++|+.+... .+||.|+++.+
T Consensus 130 ~~d~~~~~~~~~~fD~Ii~~~~ 151 (205)
T PRK13944 130 HGDGKRGLEKHAPFDAIIVTAA 151 (205)
T ss_pred ECCcccCCccCCCccEEEEccC
Confidence 999987432 37999998754
No 16
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.56 E-value=6.2e-14 Score=110.87 Aligned_cols=92 Identities=24% Similarity=0.316 Sum_probs=79.5
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ 88 (232)
.+..|.+.+.+++.+++.++++|||||||+|.++..+++.. .+|+++|+++++++.|++++...++ ++++++++|+
T Consensus 59 ~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~ 137 (215)
T TIGR00080 59 TISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDG 137 (215)
T ss_pred EechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCc
Confidence 34558899999999999999999999999999999998843 4599999999999999999999887 5899999999
Q ss_pred CCCCC--CCcceeecccC
Q 047897 89 LKTEF--PQFDLVVANIP 104 (232)
Q Consensus 89 ~~~~~--~~~D~Vi~n~p 104 (232)
.+... .+||+|+++.+
T Consensus 138 ~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 138 TQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred ccCCcccCCCCEEEEcCC
Confidence 87533 37999998654
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.56 E-value=2.9e-14 Score=108.65 Aligned_cols=88 Identities=26% Similarity=0.496 Sum_probs=70.1
Q ss_pred HHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-CCcc
Q 047897 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-PQFD 97 (232)
Q Consensus 21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~D 97 (232)
-+++.+...++.+|||+|||+|.++..++... .+|+++|+++.+++.+++++..++++. ++++++|..+... .+||
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD 100 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFD 100 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEE
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccccccee
Confidence 33444443367799999999999999999954 369999999999999999999998854 9999999987544 5899
Q ss_pred eeecccCcccch
Q 047897 98 LVVANIPYGISS 109 (232)
Q Consensus 98 ~Vi~n~p~~~~~ 109 (232)
+|++|||++...
T Consensus 101 ~Iv~NPP~~~~~ 112 (170)
T PF05175_consen 101 LIVSNPPFHAGG 112 (170)
T ss_dssp EEEE---SBTTS
T ss_pred EEEEccchhccc
Confidence 999999976654
No 18
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=1.6e-14 Score=114.36 Aligned_cols=87 Identities=26% Similarity=0.479 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF 93 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (232)
..+-+.+++.+...+|.+|||+|||||.++..+++.. ++|+|+|+++.|++.++++....+.. +++++++|++++|+
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~i~fv~~dAe~LPf 115 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-NVEFVVGDAENLPF 115 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-ceEEEEechhhCCC
Confidence 4455566666766689999999999999999999944 89999999999999999999987764 49999999999998
Q ss_pred C--Ccceeeccc
Q 047897 94 P--QFDLVVANI 103 (232)
Q Consensus 94 ~--~~D~Vi~n~ 103 (232)
+ +||.|.+..
T Consensus 116 ~D~sFD~vt~~f 127 (238)
T COG2226 116 PDNSFDAVTISF 127 (238)
T ss_pred CCCccCEEEeee
Confidence 7 899998753
No 19
>PHA03411 putative methyltransferase; Provisional
Probab=99.55 E-value=2.9e-14 Score=114.53 Aligned_cols=92 Identities=23% Similarity=0.390 Sum_probs=76.3
Q ss_pred CcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEE
Q 047897 8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85 (232)
Q Consensus 8 ~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 85 (232)
.|| |++++.++..++. ......+|||+|||+|.++..++.. ..+|+|+|+++.+++.+++++ +++++++
T Consensus 45 ~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~ 115 (279)
T PHA03411 45 SGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWIT 115 (279)
T ss_pred cee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEE
Confidence 577 8888888866642 3345679999999999999988773 579999999999999999874 3688999
Q ss_pred cCCCCCCCC-CcceeecccCcccc
Q 047897 86 KDALKTEFP-QFDLVVANIPYGIS 108 (232)
Q Consensus 86 ~D~~~~~~~-~~D~Vi~n~p~~~~ 108 (232)
+|+.++..+ .||+|++|+||+..
T Consensus 116 ~D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 116 SDVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred CchhhhcccCCCcEEEEcCCcccc
Confidence 999987643 79999999999874
No 20
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.55 E-value=1.5e-13 Score=108.34 Aligned_cols=93 Identities=24% Similarity=0.319 Sum_probs=80.6
Q ss_pred CcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE
Q 047897 8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84 (232)
Q Consensus 8 ~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 84 (232)
.||+ +..|.+...+++.+++.++++|||||||+|+++..+++. ..+|+++|+++++++.+++++...+. ++++++
T Consensus 55 ~g~~-~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~ 132 (212)
T PRK13942 55 YGQT-ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVI 132 (212)
T ss_pred CCCE-eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEE
Confidence 4564 456999999999999999999999999999999888873 36999999999999999999998887 589999
Q ss_pred EcCCCCCCC--CCcceeecc
Q 047897 85 SKDALKTEF--PQFDLVVAN 102 (232)
Q Consensus 85 ~~D~~~~~~--~~~D~Vi~n 102 (232)
++|+..... .+||+|+++
T Consensus 133 ~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 133 VGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred ECCcccCCCcCCCcCEEEEC
Confidence 999976543 479999875
No 21
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.55 E-value=5.8e-14 Score=117.88 Aligned_cols=96 Identities=24% Similarity=0.301 Sum_probs=85.8
Q ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92 (232)
Q Consensus 13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 92 (232)
..++.+.+.+++.+.+.++++|||+|||+|.++..++..+.+++|+|+|+.+++.+++|+...++. ++.++++|+.+++
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~ 243 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLP 243 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCC
Confidence 346889999999888889999999999999999988888899999999999999999999988884 4899999999987
Q ss_pred C--CCcceeecccCcccch
Q 047897 93 F--PQFDLVVANIPYGISS 109 (232)
Q Consensus 93 ~--~~~D~Vi~n~p~~~~~ 109 (232)
. ..||.|++|+||+...
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRST 262 (329)
T ss_pred cccCCCCEEEECCCCcCcc
Confidence 6 3799999999998753
No 22
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.52 E-value=1.6e-14 Score=103.13 Aligned_cols=78 Identities=37% Similarity=0.592 Sum_probs=67.7
Q ss_pred CCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----CCCcceeecccCc
Q 047897 31 DDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----FPQFDLVVANIPY 105 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----~~~~D~Vi~n~p~ 105 (232)
|.+|||+|||+|.++..+++.+ .+++|+|+|+..++.++.++...+..++++++++|+.+.. ..+||+|++|+||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5689999999999999999977 9999999999999999999999888778999999998764 3489999999999
Q ss_pred ccc
Q 047897 106 GIS 108 (232)
Q Consensus 106 ~~~ 108 (232)
...
T Consensus 81 ~~~ 83 (117)
T PF13659_consen 81 GPR 83 (117)
T ss_dssp TSB
T ss_pred ccc
Confidence 754
No 23
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.52 E-value=5.9e-13 Score=116.04 Aligned_cols=101 Identities=25% Similarity=0.309 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--- 92 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--- 92 (232)
+.+++.+++.+.+.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...++ ++++++.+|+.+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhh
Confidence 34555666667777888999999999999999999888999999999999999999998887 47999999997531
Q ss_pred ---CCCcceeecccCcccchHHHHHHhc
Q 047897 93 ---FPQFDLVVANIPYGISSPLVAKLVY 117 (232)
Q Consensus 93 ---~~~~D~Vi~n~p~~~~~~~l~~~~~ 117 (232)
..+||+|++|+|+....+.+..+..
T Consensus 362 ~~~~~~fD~Vi~dPPr~g~~~~~~~l~~ 389 (443)
T PRK13168 362 PWALGGFDKVLLDPPRAGAAEVMQALAK 389 (443)
T ss_pred hhhcCCCCEEEECcCCcChHHHHHHHHh
Confidence 2369999999999876666655544
No 24
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5.1e-14 Score=115.17 Aligned_cols=76 Identities=26% Similarity=0.497 Sum_probs=67.9
Q ss_pred EEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcccch
Q 047897 33 TVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISS 109 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~~ 109 (232)
+|||+|||+|.++..++... .+|+|+|+|+.+++.|++|+..+++ .++.++++|..+.-.+.||+|++||||-..+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCCceeEEEeCCCCCCCc
Confidence 79999999999999999843 5999999999999999999999998 6788888888776556999999999997665
No 25
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.50 E-value=2.2e-13 Score=111.98 Aligned_cols=81 Identities=22% Similarity=0.441 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCCCcceeecccCc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFPQFDLVVANIPY 105 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~~~D~Vi~n~p~ 105 (232)
.++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...++.++++++++|+.+. +...||+|++||||
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 34578999999999999999983 5799999999999999999999888766899999998653 32379999999999
Q ss_pred ccch
Q 047897 106 GISS 109 (232)
Q Consensus 106 ~~~~ 109 (232)
....
T Consensus 200 ~~~~ 203 (284)
T TIGR03533 200 VDAE 203 (284)
T ss_pred CCcc
Confidence 7654
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.50 E-value=2.6e-13 Score=101.52 Aligned_cols=78 Identities=26% Similarity=0.508 Sum_probs=67.8
Q ss_pred CCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--C-CCcceeecc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--F-PQFDLVVAN 102 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~-~~~D~Vi~n 102 (232)
+++.+|||+|||+|.++..+++ .+.+++|+|+++++++.|++++...+++ +++++++|+.+++ + ..||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 4678999999999999999994 4689999999999999999999988884 8999999999977 5 489999998
Q ss_pred cCccc
Q 047897 103 IPYGI 107 (232)
Q Consensus 103 ~p~~~ 107 (232)
.+++.
T Consensus 81 ~~l~~ 85 (152)
T PF13847_consen 81 GVLHH 85 (152)
T ss_dssp STGGG
T ss_pred Cchhh
Confidence 76533
No 27
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.50 E-value=1.9e-13 Score=105.02 Aligned_cols=86 Identities=28% Similarity=0.342 Sum_probs=72.7
Q ss_pred HHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeec
Q 047897 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVA 101 (232)
Q Consensus 22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~ 101 (232)
+.+.+...++++|||+|||+|.++..++..+.+|+++|+++.+++.+++++...+. +++++.+|+.+...++||+|++
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~fD~Vi~ 88 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVRGKFDVILF 88 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccCCcccEEEE
Confidence 33444445667899999999999999999777999999999999999999987764 5899999998766668999999
Q ss_pred ccCcccch
Q 047897 102 NIPYGISS 109 (232)
Q Consensus 102 n~p~~~~~ 109 (232)
|+||+...
T Consensus 89 n~p~~~~~ 96 (179)
T TIGR00537 89 NPPYLPLE 96 (179)
T ss_pred CCCCCCCc
Confidence 99997553
No 28
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.49 E-value=2.6e-13 Score=104.09 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCe---------EEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKK---------VHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~---------v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
-.++.++..|+..+++++++.|||.-||+|.+..+.+. .... ++|.|+|+.+++.+++|+...++...+
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 34589999999999999999999999999999988766 3333 889999999999999999999987889
Q ss_pred EEEEcCCCCCCC--CCcceeecccCcccc
Q 047897 82 NVISKDALKTEF--PQFDLVVANIPYGIS 108 (232)
Q Consensus 82 ~~~~~D~~~~~~--~~~D~Vi~n~p~~~~ 108 (232)
.+.++|+.+++. +.+|.|++|+||+..
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRR 119 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTS
T ss_pred EEEecchhhcccccCCCCEEEECcchhhh
Confidence 999999999884 378999999999865
No 29
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.49 E-value=3.1e-13 Score=114.36 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=74.1
Q ss_pred HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCC--ccEEEEEcCCCCCC-C
Q 047897 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFH--DRLNVISKDALKTE-F 93 (232)
Q Consensus 19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~D~~~~~-~ 93 (232)
.+.+++.++...+.+|||+|||+|.++..+++ +..+|+++|+|+.+++.+++++..++.+ .+++++.+|+.+.. .
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence 44566777655567999999999999999988 3579999999999999999999876542 37899999987643 3
Q ss_pred CCcceeecccCcccc
Q 047897 94 PQFDLVVANIPYGIS 108 (232)
Q Consensus 94 ~~~D~Vi~n~p~~~~ 108 (232)
.+||+|++|+||+..
T Consensus 297 ~~fDlIlsNPPfh~~ 311 (378)
T PRK15001 297 FRFNAVLCNPPFHQQ 311 (378)
T ss_pred CCEEEEEECcCcccC
Confidence 389999999999865
No 30
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.49 E-value=2.9e-13 Score=105.94 Aligned_cols=94 Identities=26% Similarity=0.411 Sum_probs=75.6
Q ss_pred cccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEE
Q 047897 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85 (232)
Q Consensus 9 gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 85 (232)
|+ .+..|.+...+++.++++++++|||||||+|++|..++. ...+|+++|+++.+++.|++++...+. .|+.+++
T Consensus 52 ~~-~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~ 129 (209)
T PF01135_consen 52 GQ-TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVV 129 (209)
T ss_dssp TE-EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEE
T ss_pred ee-echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEE
Confidence 44 445699999999999999999999999999999999998 235799999999999999999999887 5899999
Q ss_pred cCCCCCCC--CCcceeecccC
Q 047897 86 KDALKTEF--PQFDLVVANIP 104 (232)
Q Consensus 86 ~D~~~~~~--~~~D~Vi~n~p 104 (232)
+|...... .+||.|+++..
T Consensus 130 gdg~~g~~~~apfD~I~v~~a 150 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA 150 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB
T ss_pred cchhhccccCCCcCEEEEeec
Confidence 99876432 38999997643
No 31
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.48 E-value=1.2e-13 Score=110.04 Aligned_cols=87 Identities=26% Similarity=0.512 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 92 (232)
+.+.+.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|++++|++.++++....+. .+++++++|++++|
T Consensus 33 ~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~lp 111 (233)
T PF01209_consen 33 RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDLP 111 (233)
T ss_dssp ----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHhc
Confidence 444556666667788999999999999999999873 46999999999999999999998776 48999999999988
Q ss_pred CC--Ccceeeccc
Q 047897 93 FP--QFDLVVANI 103 (232)
Q Consensus 93 ~~--~~D~Vi~n~ 103 (232)
++ +||.|++..
T Consensus 112 ~~d~sfD~v~~~f 124 (233)
T PF01209_consen 112 FPDNSFDAVTCSF 124 (233)
T ss_dssp S-TT-EEEEEEES
T ss_pred CCCCceeEEEHHh
Confidence 75 799999754
No 32
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.48 E-value=2.3e-13 Score=115.47 Aligned_cols=79 Identities=24% Similarity=0.408 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeeccc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANI 103 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~ 103 (232)
.++.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|++|+...+. +++++++|+.+... .+||+|++||
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECC
Confidence 4567999999999999999886 468999999999999999999988763 79999999976432 3799999999
Q ss_pred Ccccch
Q 047897 104 PYGISS 109 (232)
Q Consensus 104 p~~~~~ 109 (232)
||....
T Consensus 328 PYI~~~ 333 (423)
T PRK14966 328 PYIENG 333 (423)
T ss_pred CCCCcc
Confidence 997653
No 33
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.48 E-value=4.2e-13 Score=110.45 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=69.1
Q ss_pred CEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccCcccc
Q 047897 32 DTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYGIS 108 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p~~~~ 108 (232)
.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|++++...++..+++++++|+.+.... +||+|++|+||...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999998 34799999999999999999999888755699999999874333 79999999999876
Q ss_pred hH
Q 047897 109 SP 110 (232)
Q Consensus 109 ~~ 110 (232)
..
T Consensus 196 ~~ 197 (284)
T TIGR00536 196 ED 197 (284)
T ss_pred ch
Confidence 54
No 34
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.47 E-value=7.9e-13 Score=102.76 Aligned_cols=92 Identities=20% Similarity=0.266 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897 16 QRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE- 92 (232)
Q Consensus 16 ~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~- 92 (232)
..+.+.+++.+. ..++.+|||+|||+|.++..++. ...+|+++|+++.+++.+++|+...+. .+++++++|+.+..
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~ 116 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLA 116 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHh
Confidence 445555666553 24678999999999999997554 557999999999999999999998887 47999999997642
Q ss_pred --CCCcceeecccCcccc
Q 047897 93 --FPQFDLVVANIPYGIS 108 (232)
Q Consensus 93 --~~~~D~Vi~n~p~~~~ 108 (232)
..+||+|++||||...
T Consensus 117 ~~~~~fDlV~~DPPy~~g 134 (199)
T PRK10909 117 QPGTPHNVVFVDPPFRKG 134 (199)
T ss_pred hcCCCceEEEECCCCCCC
Confidence 2369999999998654
No 35
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1e-12 Score=103.50 Aligned_cols=115 Identities=24% Similarity=0.284 Sum_probs=94.6
Q ss_pred cccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCc
Q 047897 3 FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHD 79 (232)
Q Consensus 3 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 79 (232)
+..|+-.|-.+ |.-+..|+..+++.+|++|+|.|.|+|.+|..|+. ...+|+.+|+.+++++.|++|++..++.+
T Consensus 69 ~~~~R~tQiIy--PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d 146 (256)
T COG2519 69 LSMKRRTQIIY--PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD 146 (256)
T ss_pred HhCcCCCceec--CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc
Confidence 34455566544 66778889999999999999999999999999997 45899999999999999999999999977
Q ss_pred cEEEEEcCCCCCCCC-CcceeecccCcccch-HHHHHHhcCC
Q 047897 80 RLNVISKDALKTEFP-QFDLVVANIPYGISS-PLVAKLVYGT 119 (232)
Q Consensus 80 ~~~~~~~D~~~~~~~-~~D~Vi~n~p~~~~~-~~l~~~~~~~ 119 (232)
++++..+|+.+...+ .+|.|+.++|-.|.. +-+...+...
T Consensus 147 ~v~~~~~Dv~~~~~~~~vDav~LDmp~PW~~le~~~~~Lkpg 188 (256)
T COG2519 147 RVTLKLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDALKPG 188 (256)
T ss_pred ceEEEeccccccccccccCEEEEcCCChHHHHHHHHHHhCCC
Confidence 799999999987655 899999999977762 3334444433
No 36
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=2.3e-13 Score=106.09 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=70.6
Q ss_pred HHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceee
Q 047897 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVV 100 (232)
Q Consensus 22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi 100 (232)
+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++....++ .++++..+|+.+.+.+ +||+|+
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~ 100 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFIL 100 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEE
Confidence 34445555678999999999999999999889999999999999999999988777 4689999999877654 799999
Q ss_pred cccCc
Q 047897 101 ANIPY 105 (232)
Q Consensus 101 ~n~p~ 105 (232)
++..+
T Consensus 101 ~~~~~ 105 (197)
T PRK11207 101 STVVL 105 (197)
T ss_pred Eecch
Confidence 87654
No 37
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.7e-13 Score=108.86 Aligned_cols=93 Identities=23% Similarity=0.373 Sum_probs=78.1
Q ss_pred HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF 96 (232)
Q Consensus 19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 96 (232)
.+-+++.++...+.+|||+|||.|.++..+++ +..+++.+|+|..+++.+++|+..++.+ +..+..+|..+--.++|
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccccccc
Confidence 34566777777677999999999999999999 4579999999999999999999998874 44788888877666699
Q ss_pred ceeecccCcccchHHH
Q 047897 97 DLVVANIPYGISSPLV 112 (232)
Q Consensus 97 D~Vi~n~p~~~~~~~l 112 (232)
|.|++|||||......
T Consensus 226 d~IisNPPfh~G~~v~ 241 (300)
T COG2813 226 DLIISNPPFHAGKAVV 241 (300)
T ss_pred cEEEeCCCccCCcchh
Confidence 9999999998775443
No 38
>PRK14967 putative methyltransferase; Provisional
Probab=99.46 E-value=4.8e-13 Score=106.37 Aligned_cols=93 Identities=26% Similarity=0.423 Sum_probs=76.6
Q ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE- 92 (232)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~- 92 (232)
+..++..++....+.++++|||+|||+|.++..++..+ .+++++|+|+.+++.+++++...+. ++.++++|+.+..
T Consensus 21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~ 98 (223)
T PRK14967 21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE 98 (223)
T ss_pred cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc
Confidence 44455566666667788999999999999999988854 4999999999999999999987765 5889999997642
Q ss_pred CCCcceeecccCcccch
Q 047897 93 FPQFDLVVANIPYGISS 109 (232)
Q Consensus 93 ~~~~D~Vi~n~p~~~~~ 109 (232)
..+||+|++|+||....
T Consensus 99 ~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 99 FRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CCCeeEEEECCCCCCCC
Confidence 34899999999997654
No 39
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=5.2e-13 Score=107.69 Aligned_cols=83 Identities=31% Similarity=0.460 Sum_probs=76.7
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF 96 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 96 (232)
-++.+++.+.+.+|++|||||||-|.++..+++ .+.+|+|+++|+++.+.+++++...|++.+++++..|..+++.. |
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~-f 138 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP-F 138 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc-c
Confidence 466778899999999999999999999999999 57999999999999999999999999987999999999888754 9
Q ss_pred ceeec
Q 047897 97 DLVVA 101 (232)
Q Consensus 97 D~Vi~ 101 (232)
|.|++
T Consensus 139 DrIvS 143 (283)
T COG2230 139 DRIVS 143 (283)
T ss_pred ceeee
Confidence 99997
No 40
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.46 E-value=5.7e-12 Score=97.50 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=77.0
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~ 89 (232)
-++.+.+.+.+++.+++.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++...++ ++++++.+|+.
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~ 91 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAP 91 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCch
Confidence 3555777777788888888999999999999999999873 47999999999999999999988776 47999999985
Q ss_pred CCCCCCcceeecccCc
Q 047897 90 KTEFPQFDLVVANIPY 105 (232)
Q Consensus 90 ~~~~~~~D~Vi~n~p~ 105 (232)
.....+||+|+++...
T Consensus 92 ~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 92 IELPGKADAIFIGGSG 107 (187)
T ss_pred hhcCcCCCEEEECCCc
Confidence 4323479999986543
No 41
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.46 E-value=2.1e-12 Score=97.47 Aligned_cols=103 Identities=29% Similarity=0.401 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
++.+++..-.+..+.+.++++++|||||+|.++..++. +..+|+|+|.++++++..++|....|+ +|++++.||+-+
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~ 95 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPE 95 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchH
Confidence 57788888889999999999999999999999999995 779999999999999999999999997 799999999987
Q ss_pred CC--CCCcceeecccCcccchHHHHHHhc
Q 047897 91 TE--FPQFDLVVANIPYGISSPLVAKLVY 117 (232)
Q Consensus 91 ~~--~~~~D~Vi~n~p~~~~~~~l~~~~~ 117 (232)
.. .+++|.|+..=- ...+.++.....
T Consensus 96 ~L~~~~~~daiFIGGg-~~i~~ile~~~~ 123 (187)
T COG2242 96 ALPDLPSPDAIFIGGG-GNIEEILEAAWE 123 (187)
T ss_pred hhcCCCCCCEEEECCC-CCHHHHHHHHHH
Confidence 63 337998886533 333444444443
No 42
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.46 E-value=1.3e-12 Score=109.05 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=82.2
Q ss_pred ccCCHHHHHHHHH----hcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897 12 ILTNQRVLDSIVR----KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87 (232)
Q Consensus 12 fl~~~~~~~~i~~----~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D 87 (232)
|-.++.+.+.+.+ .+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...++ ++++++++|
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D 229 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALD 229 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcC
Confidence 3456665555543 44433568999999999999999999889999999999999999999999888 589999999
Q ss_pred CCCCCC---CCcceeecccCcccchHHHHHHh
Q 047897 88 ALKTEF---PQFDLVVANIPYGISSPLVAKLV 116 (232)
Q Consensus 88 ~~~~~~---~~~D~Vi~n~p~~~~~~~l~~~~ 116 (232)
+.++.. ..||+|+.|+|+....+.+..++
T Consensus 230 ~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l 261 (315)
T PRK03522 230 STQFATAQGEVPDLVLVNPPRRGIGKELCDYL 261 (315)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHHHHHHH
Confidence 987532 36999999999875444443333
No 43
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.46 E-value=3.5e-13 Score=109.79 Aligned_cols=85 Identities=32% Similarity=0.452 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ 95 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~ 95 (232)
..++.+++.+++++|++|||||||-|.++..+++. +++|+|+.+|++..+.+++++...|+++++++..+|..+++. +
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~-~ 127 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG-K 127 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-C
Confidence 45677888999999999999999999999999995 999999999999999999999999998899999999988765 8
Q ss_pred cceeecc
Q 047897 96 FDLVVAN 102 (232)
Q Consensus 96 ~D~Vi~n 102 (232)
||.|++-
T Consensus 128 fD~IvSi 134 (273)
T PF02353_consen 128 FDRIVSI 134 (273)
T ss_dssp -SEEEEE
T ss_pred CCEEEEE
Confidence 9999873
No 44
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.46 E-value=1.6e-12 Score=102.60 Aligned_cols=92 Identities=22% Similarity=0.366 Sum_probs=79.3
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
++..+.+...+++.+.+.++.+|||+|||+|.++..++....+|+++|+++++++.+++++...++ .+++++.+|+.+.
T Consensus 60 ~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 138 (212)
T PRK00312 60 TISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKG 138 (212)
T ss_pred eeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccC
Confidence 456689999999999998999999999999999998877667999999999999999999988887 4699999998664
Q ss_pred C--CCCcceeecccC
Q 047897 92 E--FPQFDLVVANIP 104 (232)
Q Consensus 92 ~--~~~~D~Vi~n~p 104 (232)
. ..+||.|+++.+
T Consensus 139 ~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 139 WPAYAPFDRILVTAA 153 (212)
T ss_pred CCcCCCcCEEEEccC
Confidence 2 247999998654
No 45
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.44 E-value=1.1e-12 Score=104.75 Aligned_cols=90 Identities=17% Similarity=0.408 Sum_probs=76.3
Q ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
.....+.+++.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+++++...+. ++++++++|+.+.
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 108 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL 108 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC
Confidence 4555677888888888999999999999999999873 46999999999999999999987766 5899999999887
Q ss_pred CCC--CcceeecccCc
Q 047897 92 EFP--QFDLVVANIPY 105 (232)
Q Consensus 92 ~~~--~~D~Vi~n~p~ 105 (232)
+.+ +||+|+++.++
T Consensus 109 ~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGL 124 (231)
T ss_pred CCCCCCccEEEEeccc
Confidence 653 79999987553
No 46
>PLN02244 tocopherol O-methyltransferase
Probab=99.44 E-value=8.5e-13 Score=111.22 Aligned_cols=87 Identities=24% Similarity=0.370 Sum_probs=75.9
Q ss_pred HHHHHHHHhcCC-----CCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 17 RVLDSIVRKSSI-----NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 17 ~~~~~i~~~~~~-----~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
.+++.+++.+.+ .++++|||||||+|.++..+++ .+.+|+|+|+++.+++.++++....+..++++++.+|+.+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 567777887776 6788999999999999999998 4789999999999999999999888776689999999998
Q ss_pred CCCC--Ccceeeccc
Q 047897 91 TEFP--QFDLVVANI 103 (232)
Q Consensus 91 ~~~~--~~D~Vi~n~ 103 (232)
.+++ +||+|+++.
T Consensus 180 ~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 180 QPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCCCCccEEEECC
Confidence 7754 799999854
No 47
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=1e-12 Score=109.05 Aligned_cols=79 Identities=22% Similarity=0.424 Sum_probs=68.6
Q ss_pred CEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCCCcceeecccCcccc
Q 047897 32 DTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFPQFDLVVANIPYGIS 108 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~~~D~Vi~n~p~~~~ 108 (232)
.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...++.++++++++|+.+. +..+||+|++|+||...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 68999999999999999873 5799999999999999999999888766799999998763 33379999999999765
Q ss_pred hH
Q 047897 109 SP 110 (232)
Q Consensus 109 ~~ 110 (232)
..
T Consensus 215 ~~ 216 (307)
T PRK11805 215 ED 216 (307)
T ss_pred cc
Confidence 43
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.43 E-value=2e-12 Score=102.50 Aligned_cols=84 Identities=26% Similarity=0.359 Sum_probs=71.3
Q ss_pred HHHHHHHhcC--CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897 18 VLDSIVRKSS--INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ 95 (232)
Q Consensus 18 ~~~~i~~~~~--~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~ 95 (232)
+.+.+++.+. ..++.+|||+|||+|.++..++..+.+|+|+|+|+++++.|++++...+...++.+.++|+.+.+ .+
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~ 119 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-GE 119 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-CC
Confidence 4445666655 45688999999999999999998888999999999999999999987665457999999998877 78
Q ss_pred cceeecc
Q 047897 96 FDLVVAN 102 (232)
Q Consensus 96 ~D~Vi~n 102 (232)
||+|++.
T Consensus 120 fD~ii~~ 126 (219)
T TIGR02021 120 FDIVVCM 126 (219)
T ss_pred cCEEEEh
Confidence 9999874
No 49
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.42 E-value=1.5e-12 Score=100.32 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeeccc
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANI 103 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~ 103 (232)
++++.+|||+|||+|..+..++. .+.+|+|+|+++.+++.++++.+..+++ +++++++|+.+.+.. +||+|+++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~ 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRA 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEcc
Confidence 44588999999999999998886 5689999999999999999999998874 599999999887654 799999873
No 50
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.42 E-value=4.1e-12 Score=103.27 Aligned_cols=87 Identities=22% Similarity=0.264 Sum_probs=68.9
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhh--cCCCccEEEEEcCCCCCC
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAAD--SGFHDRLNVISKDALKTE 92 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~~~~~~~D~~~~~ 92 (232)
+.+.+++.+.+.++++|||+|||+|.++..+++. ..+|+|+|+|++|++.|+++... .+...+++++++|+.+++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 3444456667778899999999999999988873 36999999999999999987642 112257999999999987
Q ss_pred CC--CcceeecccC
Q 047897 93 FP--QFDLVVANIP 104 (232)
Q Consensus 93 ~~--~~D~Vi~n~p 104 (232)
++ +||.|+++..
T Consensus 141 ~~~~sfD~V~~~~~ 154 (261)
T PLN02233 141 FDDCYFDAITMGYG 154 (261)
T ss_pred CCCCCEeEEEEecc
Confidence 65 7999998653
No 51
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.41 E-value=2.7e-12 Score=107.09 Aligned_cols=104 Identities=26% Similarity=0.453 Sum_probs=78.0
Q ss_pred ccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---------cCCeEEEEEcCHHHHHHHHHHHhh
Q 047897 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---------VSKKVHAIEIDERMVEILNRRAAD 74 (232)
Q Consensus 4 ~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---------~~~~v~~vD~~~~~~~~a~~~~~~ 74 (232)
.+|..|| |++++.+++.|++.+...++.+|+|.+||+|.+..++.+ ....++|+|+++.++..|+.++..
T Consensus 21 ~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 21 SRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp TTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred hccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 4677888 678899999999999888888999999999999888776 457899999999999999988876
Q ss_pred cCCC-ccEEEEEcCCCCCCC----CCcceeecccCcccc
Q 047897 75 SGFH-DRLNVISKDALKTEF----PQFDLVVANIPYGIS 108 (232)
Q Consensus 75 ~~~~-~~~~~~~~D~~~~~~----~~~D~Vi~n~p~~~~ 108 (232)
.+.. .+..+..+|.+..+. ..||+|++||||...
T Consensus 100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred hccccccccccccccccccccccccccccccCCCCcccc
Confidence 6542 235689999887643 379999999999876
No 52
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.41 E-value=7.5e-12 Score=89.93 Aligned_cols=88 Identities=24% Similarity=0.415 Sum_probs=73.4
Q ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92 (232)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 92 (232)
.+.+...+++.+.+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++...+. ++++++.+|+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEAL 82 (124)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccC
Confidence 3566777888888888889999999999999999983 57999999999999999999988776 47999999987522
Q ss_pred ---CCCcceeeccc
Q 047897 93 ---FPQFDLVVANI 103 (232)
Q Consensus 93 ---~~~~D~Vi~n~ 103 (232)
.++||.|++..
T Consensus 83 ~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 83 EDSLPEPDRVFIGG 96 (124)
T ss_pred hhhcCCCCEEEECC
Confidence 24799998754
No 53
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.41 E-value=1.6e-12 Score=101.16 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=70.1
Q ss_pred HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccce
Q 047897 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDL 98 (232)
Q Consensus 20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~ 98 (232)
..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++....++. +.+..+|+...+.+ +||+
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCE
Confidence 34445555556779999999999999999998899999999999999999998877763 77888888665543 7999
Q ss_pred eecccCccc
Q 047897 99 VVANIPYGI 107 (232)
Q Consensus 99 Vi~n~p~~~ 107 (232)
|+++.+++.
T Consensus 98 I~~~~~~~~ 106 (195)
T TIGR00477 98 IFSTVVFMF 106 (195)
T ss_pred EEEeccccc
Confidence 999876543
No 54
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.41 E-value=1.5e-12 Score=114.92 Aligned_cols=80 Identities=29% Similarity=0.451 Sum_probs=69.5
Q ss_pred CCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCCCcceeecccCccc
Q 047897 31 DDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFPQFDLVVANIPYGI 107 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~~~D~Vi~n~p~~~ 107 (232)
+.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|++++...++.++++++++|+.+. +..+||+|++|+||..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999886 46799999999999999999998888766899999998753 2347999999999987
Q ss_pred chH
Q 047897 108 SSP 110 (232)
Q Consensus 108 ~~~ 110 (232)
.++
T Consensus 219 ~~~ 221 (506)
T PRK01544 219 HSE 221 (506)
T ss_pred chh
Confidence 754
No 55
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=1.9e-12 Score=104.55 Aligned_cols=77 Identities=23% Similarity=0.285 Sum_probs=67.7
Q ss_pred CCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP 104 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p 104 (232)
.++.+|||+|||+|..+..+++ ++.+++|+|+|+.|++.|++++...+...+++++++|+.+.+.+.+|+|+++..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4678999999999999988876 467999999999999999999988776568999999999988888999998764
Q ss_pred c
Q 047897 105 Y 105 (232)
Q Consensus 105 ~ 105 (232)
+
T Consensus 135 l 135 (247)
T PRK15451 135 L 135 (247)
T ss_pred H
Confidence 3
No 56
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.40 E-value=3.3e-13 Score=109.22 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=73.4
Q ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP 94 (232)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~ 94 (232)
.+.+.+.+++.+...++.+|||+|||+|.++..+...+.+|+++|+++.+++.++++.. ...++.+|+.+++++
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCC
Confidence 35677777787776667899999999999999998888999999999999999998753 356889999887654
Q ss_pred --CcceeecccCcccc
Q 047897 95 --QFDLVVANIPYGIS 108 (232)
Q Consensus 95 --~~D~Vi~n~p~~~~ 108 (232)
+||+|+++.++++.
T Consensus 101 ~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 101 TATFDLAWSNLAVQWC 116 (251)
T ss_pred CCcEEEEEECchhhhc
Confidence 79999999876654
No 57
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.40 E-value=2.9e-12 Score=103.48 Aligned_cols=91 Identities=24% Similarity=0.455 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-C
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-F 93 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~ 93 (232)
.+++.+++.+. ..+.+|||+|||+|.++..++.. ..+++|+|+++.+++.+++++...++ ++++++++|+.+.. .
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~ 152 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLPG 152 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCcC
Confidence 45556666554 34458999999999999999983 57999999999999999999988877 47999999997732 3
Q ss_pred CCcceeecccCcccch
Q 047897 94 PQFDLVVANIPYGISS 109 (232)
Q Consensus 94 ~~~D~Vi~n~p~~~~~ 109 (232)
++||+|++|+||....
T Consensus 153 ~~fD~Vi~npPy~~~~ 168 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEA 168 (251)
T ss_pred CceeEEEECCCCCchh
Confidence 4899999999998654
No 58
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.40 E-value=2.2e-12 Score=108.42 Aligned_cols=87 Identities=17% Similarity=0.314 Sum_probs=71.5
Q ss_pred HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcc
Q 047897 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD 97 (232)
Q Consensus 20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D 97 (232)
+.+++.+.....++|||+|||+|.++..+++. ..+|+++|+|+.+++.+++++..+++. .+++.+|+.+...+.||
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~~~~fD 263 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDIKGRFD 263 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccccCCCcc
Confidence 44556565444568999999999999999984 468999999999999999999988763 57888998775445899
Q ss_pred eeecccCcccc
Q 047897 98 LVVANIPYGIS 108 (232)
Q Consensus 98 ~Vi~n~p~~~~ 108 (232)
+|++|+|||..
T Consensus 264 lIvsNPPFH~g 274 (342)
T PRK09489 264 MIISNPPFHDG 274 (342)
T ss_pred EEEECCCccCC
Confidence 99999999853
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.40 E-value=3.3e-12 Score=98.15 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-CCcceeeccc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-PQFDLVVANI 103 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~D~Vi~n~ 103 (232)
++.+|||+|||+|.++..++. ...+|+|+|.|+.+++.++++.+..++ ++++++++|+.++.. ++||+|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQHEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhccccCCccEEEehh
Confidence 478999999999999998876 357899999999999999999988887 479999999998753 4899999874
No 60
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.39 E-value=5.6e-12 Score=102.67 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=73.0
Q ss_pred HHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcc
Q 047897 23 VRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFD 97 (232)
Q Consensus 23 ~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D 97 (232)
...+++.++++|||+|||+|..|..+++. ...|+|+|+++.+++.+++++...++ .+++++++|+.+++. +.||
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCC
Confidence 45667788999999999999999998872 46899999999999999999999887 479999999877542 4799
Q ss_pred eeecccCcccc
Q 047897 98 LVVANIPYGIS 108 (232)
Q Consensus 98 ~Vi~n~p~~~~ 108 (232)
.|++|+|+...
T Consensus 143 ~Vl~D~Pcsg~ 153 (264)
T TIGR00446 143 AILLDAPCSGE 153 (264)
T ss_pred EEEEcCCCCCC
Confidence 99999998643
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=4.7e-12 Score=103.74 Aligned_cols=92 Identities=24% Similarity=0.424 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF- 93 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~- 93 (232)
.+++.++......++.+|||+|||+|.++..++.. ..+++|+|+++.+++.+++++. .....++.++++|+.+...
T Consensus 95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~ 173 (275)
T PRK09328 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPG 173 (275)
T ss_pred HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCC
Confidence 34555554555567789999999999999999883 5899999999999999999987 2233579999999976433
Q ss_pred CCcceeecccCcccch
Q 047897 94 PQFDLVVANIPYGISS 109 (232)
Q Consensus 94 ~~~D~Vi~n~p~~~~~ 109 (232)
.+||+|++|+||....
T Consensus 174 ~~fD~Iv~npPy~~~~ 189 (275)
T PRK09328 174 GRFDLIVSNPPYIPEA 189 (275)
T ss_pred CceeEEEECCCcCCcc
Confidence 4899999999997654
No 62
>PRK14968 putative methyltransferase; Provisional
Probab=99.38 E-value=5.4e-12 Score=97.45 Aligned_cols=94 Identities=23% Similarity=0.315 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCcc-EEEEEcCCCCCCCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDR-LNVISKDALKTEFP 94 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~D~~~~~~~ 94 (232)
......+++.+...++.+|||+|||+|.++..++..+.+++|+|+++++++.+++++...+..++ +.++++|+.+...+
T Consensus 9 ~~~~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 88 (188)
T PRK14968 9 AEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG 88 (188)
T ss_pred chhHHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc
Confidence 33344455555556788999999999999999998889999999999999999999987776333 88999998775433
Q ss_pred -CcceeecccCcccch
Q 047897 95 -QFDLVVANIPYGISS 109 (232)
Q Consensus 95 -~~D~Vi~n~p~~~~~ 109 (232)
.||+|++|+||....
T Consensus 89 ~~~d~vi~n~p~~~~~ 104 (188)
T PRK14968 89 DKFDVILFNPPYLPTE 104 (188)
T ss_pred cCceEEEECCCcCCCC
Confidence 699999999997653
No 63
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=1.8e-12 Score=105.11 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=72.5
Q ss_pred HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CCC
Q 047897 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FPQ 95 (232)
Q Consensus 19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~~ 95 (232)
++.+++.+. .++.+|||+|||+|.++..+++.+.+|+|+|+++++++.|+++....++.++++++++|+.+++ ..+
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence 345666665 4567999999999999999999999999999999999999999988887678999999997753 247
Q ss_pred cceeecccCc
Q 047897 96 FDLVVANIPY 105 (232)
Q Consensus 96 ~D~Vi~n~p~ 105 (232)
||+|+++..+
T Consensus 113 fD~V~~~~vl 122 (255)
T PRK11036 113 VDLILFHAVL 122 (255)
T ss_pred CCEEEehhHH
Confidence 9999986543
No 64
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.38 E-value=4.2e-12 Score=102.52 Aligned_cols=88 Identities=24% Similarity=0.297 Sum_probs=68.3
Q ss_pred HHHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897 18 VLDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-- 92 (232)
Q Consensus 18 ~~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-- 92 (232)
+++.++..+.. ..+.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.+++|+..++ .+++++|+.+..
T Consensus 73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~ 148 (251)
T TIGR03704 73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPT 148 (251)
T ss_pred HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcch
Confidence 44444444432 2345899999999999999987 35699999999999999999998754 478999987642
Q ss_pred --CCCcceeecccCcccch
Q 047897 93 --FPQFDLVVANIPYGISS 109 (232)
Q Consensus 93 --~~~~D~Vi~n~p~~~~~ 109 (232)
.+.||+|++|+||....
T Consensus 149 ~~~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTD 167 (251)
T ss_pred hcCCCEeEEEECCCCCCch
Confidence 13799999999997653
No 65
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=7.6e-12 Score=108.46 Aligned_cols=134 Identities=18% Similarity=0.221 Sum_probs=94.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 92 (232)
......+...+++.++.+|||+|||+|..|..++.. ..+|+|+|+++.+++.+++++...|+ .+++++++|+.+++
T Consensus 223 d~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l~ 301 (431)
T PRK14903 223 GESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERLT 301 (431)
T ss_pred CHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhhh
Confidence 344445556678889999999999999999998872 57999999999999999999999888 47999999998765
Q ss_pred ---CCCcceeecccCcccch-----HHHHHHhcCCCCccceEehhHHHH---HHHHhcCCCCCcccchhhe
Q 047897 93 ---FPQFDLVVANIPYGISS-----PLVAKLVYGTKSFRSATLLLQKEF---ARRLLASPGDSEFNRLAVN 152 (232)
Q Consensus 93 ---~~~~D~Vi~n~p~~~~~-----~~l~~~~~~~~~~~~~~~~~q~e~---~~rl~~~~g~~~~~~~~~~ 152 (232)
.++||.|++|+|+.... +.+.+..... -.......|.++ +.+++.++|...|.++++.
T Consensus 302 ~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~--~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 302 EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKE--DFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hhhhccCCEEEECCCCCCCccccCChHHHHhCCHH--HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 24799999999985431 2221111000 000111245544 3445666677777777763
No 66
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1e-12 Score=94.25 Aligned_cols=101 Identities=23% Similarity=0.344 Sum_probs=83.5
Q ss_pred cCCCcccccCCHHHHHHHHHhcC----CCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCc
Q 047897 5 HKSKGQHILTNQRVLDSIVRKSS----INPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHD 79 (232)
Q Consensus 5 ~k~~gq~fl~~~~~~~~i~~~~~----~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 79 (232)
+-.+-| |.+.|+++..|+..+. --+|..++|+|||.|-++..... ....|+|+|+|+++++++++|++...+
T Consensus 20 k~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-- 96 (185)
T KOG3420|consen 20 KLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-- 96 (185)
T ss_pred chhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--
Confidence 334445 7788999999987663 23678999999999999977766 457899999999999999999998776
Q ss_pred cEEEEEcCCCCCCCC--CcceeecccCcccc
Q 047897 80 RLNVISKDALKTEFP--QFDLVVANIPYGIS 108 (232)
Q Consensus 80 ~~~~~~~D~~~~~~~--~~D~Vi~n~p~~~~ 108 (232)
++++.++|+++.... .||.++.|+||+..
T Consensus 97 qidlLqcdildle~~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 97 QIDLLQCDILDLELKGGIFDTAVINPPFGTK 127 (185)
T ss_pred hhheeeeeccchhccCCeEeeEEecCCCCcc
Confidence 479999999987654 79999999999765
No 67
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.37 E-value=4.7e-12 Score=104.88 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEE-cCCCCC------CCCCccee
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADS-GFHDRLNVIS-KDALKT------EFPQFDLV 99 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~D~~~~------~~~~~D~V 99 (232)
.+.++||||||+|.+...++. .+.+++|+|+|+.+++.|++++..+ ++.++++++. .|..+. +.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457899999999988877766 4789999999999999999999998 6877888865 333221 23479999
Q ss_pred ecccCcccchHH
Q 047897 100 VANIPYGISSPL 111 (232)
Q Consensus 100 i~n~p~~~~~~~ 111 (232)
+|||||+.+...
T Consensus 194 vcNPPf~~s~~e 205 (321)
T PRK11727 194 LCNPPFHASAAE 205 (321)
T ss_pred EeCCCCcCcchh
Confidence 999999987554
No 68
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.37 E-value=4.9e-12 Score=102.94 Aligned_cols=95 Identities=27% Similarity=0.499 Sum_probs=80.2
Q ss_pred cCCCcccccCCH--HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 5 HKSKGQHILTNQ--RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 5 ~k~~gq~fl~~~--~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
-+-+|..|+.+. .....++..+.+.++.+|||||||+|..+..++. .+.+|+|+|+++.+++.++++... .+++
T Consensus 25 e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i 101 (263)
T PTZ00098 25 EFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKI 101 (263)
T ss_pred HHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCce
Confidence 455788888864 4578888889889999999999999999998877 467999999999999999998754 2579
Q ss_pred EEEEcCCCCCCCC--Ccceeecc
Q 047897 82 NVISKDALKTEFP--QFDLVVAN 102 (232)
Q Consensus 82 ~~~~~D~~~~~~~--~~D~Vi~n 102 (232)
.++.+|+.+.+++ +||+|+++
T Consensus 102 ~~~~~D~~~~~~~~~~FD~V~s~ 124 (263)
T PTZ00098 102 EFEANDILKKDFPENTFDMIYSR 124 (263)
T ss_pred EEEECCcccCCCCCCCeEEEEEh
Confidence 9999999887654 79999984
No 69
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.36 E-value=4.1e-12 Score=108.36 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=82.9
Q ss_pred ccCCHHHHHHHHHh----cCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897 12 ILTNQRVLDSIVRK----SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87 (232)
Q Consensus 12 fl~~~~~~~~i~~~----~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D 87 (232)
|-+++.+.+.+.+. ++..++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++|+...+. ++++++.+|
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d 289 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALD 289 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECC
Confidence 55677777777653 3323567999999999999999999889999999999999999999998887 489999999
Q ss_pred CCCCCC---CCcceeecccCcccchH-HHHHHh
Q 047897 88 ALKTEF---PQFDLVVANIPYGISSP-LVAKLV 116 (232)
Q Consensus 88 ~~~~~~---~~~D~Vi~n~p~~~~~~-~l~~~~ 116 (232)
+.+... .+||+|+.|||+....+ .+..+.
T Consensus 290 ~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~ 322 (374)
T TIGR02085 290 SAKFATAQMSAPELVLVNPPRRGIGKELCDYLS 322 (374)
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHH
Confidence 976432 36999999999975443 334443
No 70
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.36 E-value=3.9e-12 Score=104.79 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=88.3
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALK 90 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~ 90 (232)
-..+|.+++.+++++.+.+|+.|||.-||||++..++.-.+.+++|.|+|..|++-++.|++.+++ +...+... |+..
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i-~~~~~~~~~Da~~ 257 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI-EDYPVLKVLDATN 257 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc-CceeEEEeccccc
Confidence 456899999999999999999999999999999999988999999999999999999999999887 45666666 9999
Q ss_pred CCCCC--cceeecccCcccch
Q 047897 91 TEFPQ--FDLVVANIPYGISS 109 (232)
Q Consensus 91 ~~~~~--~D~Vi~n~p~~~~~ 109 (232)
+++++ +|.|+++|||+.++
T Consensus 258 lpl~~~~vdaIatDPPYGrst 278 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRST 278 (347)
T ss_pred CCCCCCccceEEecCCCCccc
Confidence 99874 99999999999875
No 71
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.36 E-value=6.6e-12 Score=100.32 Aligned_cols=101 Identities=26% Similarity=0.409 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 92 (232)
+.-+..|+..+++.+|++|||.|.|+|.+|..+++ ...+|+.+|++++.++.|+++++.+|+.+++++.+.|+.+..
T Consensus 26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 67788899999999999999999999999999998 568999999999999999999999999889999999997533
Q ss_pred C-----CCcceeecccCcccc-hHHHHHHh
Q 047897 93 F-----PQFDLVVANIPYGIS-SPLVAKLV 116 (232)
Q Consensus 93 ~-----~~~D~Vi~n~p~~~~-~~~l~~~~ 116 (232)
+ ..+|.|+.++|-.|. -+.+.+.+
T Consensus 106 ~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L 135 (247)
T PF08704_consen 106 FDEELESDFDAVFLDLPDPWEAIPHAKRAL 135 (247)
T ss_dssp -STT-TTSEEEEEEESSSGGGGHHHHHHHE
T ss_pred ccccccCcccEEEEeCCCHHHHHHHHHHHH
Confidence 2 368999999998875 34444555
No 72
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.36 E-value=3.2e-12 Score=103.85 Aligned_cols=86 Identities=20% Similarity=0.280 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF- 93 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~- 93 (232)
...+.++..+.+.++.+|||||||+|.++..+++ .+.+|+|+|+++.+++.++++. ++++++.+|+.++..
T Consensus 18 ~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~ 91 (258)
T PRK01683 18 RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPP 91 (258)
T ss_pred cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCC
Confidence 4567777888888889999999999999999987 3689999999999999999875 468899999987643
Q ss_pred CCcceeecccCcccc
Q 047897 94 PQFDLVVANIPYGIS 108 (232)
Q Consensus 94 ~~~D~Vi~n~p~~~~ 108 (232)
.+||+|+++..+++.
T Consensus 92 ~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 92 QALDLIFANASLQWL 106 (258)
T ss_pred CCccEEEEccChhhC
Confidence 389999999876554
No 73
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=1.1e-11 Score=103.02 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=78.1
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ 88 (232)
+..+|.+...+++.++++++++|||+|||+|.++..+++.. .+|+++|+++++++.|++++...+. +++.++++|+
T Consensus 62 ~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~ 140 (322)
T PRK13943 62 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDG 140 (322)
T ss_pred cCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCCh
Confidence 55679999999999998899999999999999999998832 4699999999999999999988887 5799999998
Q ss_pred CCCCC--CCcceeecc
Q 047897 89 LKTEF--PQFDLVVAN 102 (232)
Q Consensus 89 ~~~~~--~~~D~Vi~n 102 (232)
.+... .+||+|+++
T Consensus 141 ~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 141 YYGVPEFAPYDVIFVT 156 (322)
T ss_pred hhcccccCCccEEEEC
Confidence 76533 379999975
No 74
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.35 E-value=1.3e-11 Score=95.55 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=78.4
Q ss_pred ccCCHHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897 12 ILTNQRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~ 89 (232)
..++..+.+.+...+. .-++.+|||++||+|.++.+++.++ .+|+++|.|+.+++.+++|+...+..++++++++|+.
T Consensus 30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 4456667777777653 2357899999999999999999975 4899999999999999999998887667999999996
Q ss_pred CCC--C---C-CcceeecccCcccc
Q 047897 90 KTE--F---P-QFDLVVANIPYGIS 108 (232)
Q Consensus 90 ~~~--~---~-~~D~Vi~n~p~~~~ 108 (232)
+.- . . .+|+|+.+|||...
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~~ 134 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFNG 134 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCCC
Confidence 531 1 2 37999999999643
No 75
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.35 E-value=2.4e-12 Score=100.58 Aligned_cols=86 Identities=27% Similarity=0.363 Sum_probs=70.4
Q ss_pred CHHHHHHHHHhcCC---CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 15 NQRVLDSIVRKSSI---NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 15 ~~~~~~~i~~~~~~---~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
++--++.+.+.+.. .++.+|||||||-|.++..+++.+..|+|+|+++.+++.|+..+...|+. +++...+++++
T Consensus 41 N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl 118 (243)
T COG2227 41 NPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDL 118 (243)
T ss_pred ccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHH
Confidence 33333344444432 47889999999999999999999999999999999999999999988863 77888888887
Q ss_pred CCC--Ccceeecc
Q 047897 92 EFP--QFDLVVAN 102 (232)
Q Consensus 92 ~~~--~~D~Vi~n 102 (232)
... +||+|+|.
T Consensus 119 ~~~~~~FDvV~cm 131 (243)
T COG2227 119 ASAGGQFDVVTCM 131 (243)
T ss_pred HhcCCCccEEEEh
Confidence 654 99999985
No 76
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=2e-11 Score=106.50 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF- 93 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~- 93 (232)
.....+..+++.++++|||+|||+|..|..+++ ...+|+|+|+++.+++.+++++...|+ .+++++.+|+.+...
T Consensus 238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~ 316 (445)
T PRK14904 238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPE 316 (445)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccC
Confidence 333445567777899999999999999988876 346999999999999999999999888 479999999988753
Q ss_pred CCcceeecccCcccc
Q 047897 94 PQFDLVVANIPYGIS 108 (232)
Q Consensus 94 ~~~D~Vi~n~p~~~~ 108 (232)
..||.|+.|+|+...
T Consensus 317 ~~fD~Vl~D~Pcsg~ 331 (445)
T PRK14904 317 EQPDAILLDAPCTGT 331 (445)
T ss_pred CCCCEEEEcCCCCCc
Confidence 379999999998554
No 77
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.34 E-value=4.1e-11 Score=93.56 Aligned_cols=91 Identities=24% Similarity=0.365 Sum_probs=75.7
Q ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89 (232)
Q Consensus 13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~ 89 (232)
++.+.+....+..+++.++++|||+|||+|.++..++. ...+|+++|+++.+++.+++++...++.+++.++.+|+.
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 45466766667888889999999999999999999876 346899999999999999999998885568999999997
Q ss_pred CCC---CCCcceeeccc
Q 047897 90 KTE---FPQFDLVVANI 103 (232)
Q Consensus 90 ~~~---~~~~D~Vi~n~ 103 (232)
+.. .+.||.|+++.
T Consensus 103 ~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 103 EILFTINEKFDRIFIGG 119 (198)
T ss_pred hhHhhcCCCCCEEEECC
Confidence 642 14799999864
No 78
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.33 E-value=8.2e-12 Score=106.81 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=76.6
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDAL 89 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~ 89 (232)
|+.|+...+..+..+ .++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++|+..++++ .+++++++|+.
T Consensus 204 ~flDqr~~R~~~~~~--~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~ 281 (396)
T PRK15128 204 YYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF 281 (396)
T ss_pred cChhhHHHHHHHHHh--cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence 444455555555544 35789999999999999886664 459999999999999999999998875 47999999998
Q ss_pred CCC------CCCcceeecccCcccch
Q 047897 90 KTE------FPQFDLVVANIPYGISS 109 (232)
Q Consensus 90 ~~~------~~~~D~Vi~n~p~~~~~ 109 (232)
++. ..+||+|++||||...+
T Consensus 282 ~~l~~~~~~~~~fDlVilDPP~f~~~ 307 (396)
T PRK15128 282 KLLRTYRDRGEKFDVIVMDPPKFVEN 307 (396)
T ss_pred HHHHHHHhcCCCCCEEEECCCCCCCC
Confidence 752 23799999999986553
No 79
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=2.9e-11 Score=104.98 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE- 92 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~- 92 (232)
......++..+++.++++|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++...|+. ++++++|+.+.+
T Consensus 230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~ 307 (427)
T PRK10901 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQ 307 (427)
T ss_pred CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchh
Confidence 344555666788889999999999999999999884 369999999999999999999988863 789999998753
Q ss_pred ---CCCcceeecccCccc
Q 047897 93 ---FPQFDLVVANIPYGI 107 (232)
Q Consensus 93 ---~~~~D~Vi~n~p~~~ 107 (232)
..+||.|++|+|+..
T Consensus 308 ~~~~~~fD~Vl~D~Pcs~ 325 (427)
T PRK10901 308 WWDGQPFDRILLDAPCSA 325 (427)
T ss_pred hcccCCCCEEEECCCCCc
Confidence 237999999999864
No 80
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.32 E-value=1e-11 Score=103.41 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeecc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n 102 (232)
.++.+|||||||+|.++..+++.+.+|+|+|.++++++.|+++....+...+++++++|+.+++.+ +||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEh
Confidence 356799999999999999999888999999999999999999876554435799999999887643 79999974
No 81
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.32 E-value=1e-11 Score=99.78 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP 104 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p 104 (232)
.++.+|||+|||+|.++..+++ ++.+++|+|+++.|++.|++++...+...+++++++|+.+.+.+.+|+|+++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 4677999999999999998887 367899999999999999999887665457999999999998888999888765
Q ss_pred cc
Q 047897 105 YG 106 (232)
Q Consensus 105 ~~ 106 (232)
.+
T Consensus 132 l~ 133 (239)
T TIGR00740 132 LQ 133 (239)
T ss_pred hh
Confidence 33
No 82
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.32 E-value=1.8e-11 Score=106.58 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=79.6
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CC
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EF 93 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~ 93 (232)
+.+.+.+.+.+.++++|||+|||+|.++..+++...+|+|+|+++.+++.|++++..+++ .+++++.+|+.+. ..
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~ 358 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPW 358 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHh
Confidence 444555666667788999999999999999999888999999999999999999998887 5899999999753 11
Q ss_pred --CCcceeecccCccc-chHHHHHHh
Q 047897 94 --PQFDLVVANIPYGI-SSPLVAKLV 116 (232)
Q Consensus 94 --~~~D~Vi~n~p~~~-~~~~l~~~~ 116 (232)
..||+|+.|+|+.. ....+..+.
T Consensus 359 ~~~~~D~vi~dPPr~G~~~~~l~~l~ 384 (431)
T TIGR00479 359 AGQIPDVLLLDPPRKGCAAEVLRTII 384 (431)
T ss_pred cCCCCCEEEECcCCCCCCHHHHHHHH
Confidence 26899999999865 344544433
No 83
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=2.4e-11 Score=105.66 Aligned_cols=95 Identities=15% Similarity=0.255 Sum_probs=78.8
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ 88 (232)
|.........+...+++.++++|||+|||+|..|..+++. ..+|+|+|+++.+++.+++++...|+ .+++++++|+
T Consensus 234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~ 312 (434)
T PRK14901 234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADS 312 (434)
T ss_pred EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCCh
Confidence 3343445555566778888999999999999999999873 36899999999999999999999998 4799999999
Q ss_pred CCCC------CCCcceeecccCccc
Q 047897 89 LKTE------FPQFDLVVANIPYGI 107 (232)
Q Consensus 89 ~~~~------~~~~D~Vi~n~p~~~ 107 (232)
.+.+ ...||.|++|+|+..
T Consensus 313 ~~~~~~~~~~~~~fD~Vl~DaPCSg 337 (434)
T PRK14901 313 RNLLELKPQWRGYFDRILLDAPCSG 337 (434)
T ss_pred hhcccccccccccCCEEEEeCCCCc
Confidence 8765 237999999999754
No 84
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.32 E-value=4.5e-12 Score=102.85 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF- 93 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~- 93 (232)
.....+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+++.|++.++++ +++++++|+.+++.
T Consensus 16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~ 87 (255)
T PRK14103 16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPK 87 (255)
T ss_pred CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCC
Confidence 44567788888788899999999999999999884 67999999999999998763 37799999987643
Q ss_pred CCcceeecccCcccc
Q 047897 94 PQFDLVVANIPYGIS 108 (232)
Q Consensus 94 ~~~D~Vi~n~p~~~~ 108 (232)
++||+|+++..+++.
T Consensus 88 ~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 88 PDTDVVVSNAALQWV 102 (255)
T ss_pred CCceEEEEehhhhhC
Confidence 489999998776554
No 85
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.31 E-value=1.1e-11 Score=101.75 Aligned_cols=110 Identities=32% Similarity=0.356 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCccc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGI 107 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~ 107 (232)
.++++|||+|||+|.++...++.+ .+|+|+|+|+.+++.|++|+..+++..++.+. ...+....+||+|++|+-.+.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~~~v 237 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANILADV 237 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES-HHH
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCCHHH
Confidence 577899999999999999999955 58999999999999999999999997766553 233333468999999986544
Q ss_pred chHHHH---HHhc-CCCCccceEehhHHHHHHHHhcC
Q 047897 108 SSPLVA---KLVY-GTKSFRSATLLLQKEFARRLLAS 140 (232)
Q Consensus 108 ~~~~l~---~~~~-~~~~~~~~~~~~q~e~~~rl~~~ 140 (232)
-..+.. ..+. .+.....+.+..|.+.....+.+
T Consensus 238 L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~ 274 (295)
T PF06325_consen 238 LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ 274 (295)
T ss_dssp HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC
Confidence 433322 2222 22333445555666555544443
No 86
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.31 E-value=5e-12 Score=87.92 Aligned_cols=66 Identities=32% Similarity=0.569 Sum_probs=55.9
Q ss_pred EEEEcCCccHhHHHHHhcC-----CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeec
Q 047897 34 VLEIGPGTGNLTLKLLEVS-----KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVA 101 (232)
Q Consensus 34 vLDiG~G~G~~t~~l~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~ 101 (232)
|||+|||+|..+..+++.. .+++|+|+|+++++.++++....+. +++++++|+.+++. ++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999843 8999999999999999999987664 69999999998764 38999998
No 87
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.31 E-value=6.7e-12 Score=96.16 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=76.1
Q ss_pred HHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Cc
Q 047897 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QF 96 (232)
Q Consensus 20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~ 96 (232)
..++..+.+....+|.|+|||+|..|..+++ +...++|+|.|++|++.|++++ ++++|..+|+.++..+ +.
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~ 93 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPT 93 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCcc
Confidence 3455666777788999999999999999999 6899999999999999998887 6799999999998654 78
Q ss_pred ceeecccCcccch---HHHHHHhc
Q 047897 97 DLVVANIPYGISS---PLVAKLVY 117 (232)
Q Consensus 97 D~Vi~n~p~~~~~---~~l~~~~~ 117 (232)
|++++|-.++|-. ..+.+++.
T Consensus 94 dllfaNAvlqWlpdH~~ll~rL~~ 117 (257)
T COG4106 94 DLLFANAVLQWLPDHPELLPRLVS 117 (257)
T ss_pred chhhhhhhhhhccccHHHHHHHHH
Confidence 9999998887763 34444443
No 88
>PLN02672 methionine S-methyltransferase
Probab=99.30 E-value=1e-11 Score=116.42 Aligned_cols=99 Identities=22% Similarity=0.280 Sum_probs=77.1
Q ss_pred ccCCHHHHHHHHHhcCCC-----CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCC-------
Q 047897 12 ILTNQRVLDSIVRKSSIN-----PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGF------- 77 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~-----~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~------- 77 (232)
.++++...+.+++.+... ++.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|++|+..+++
T Consensus 95 VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 95 IFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred cccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence 455566566666654322 245899999999999999988 347999999999999999999987543
Q ss_pred --------CccEEEEEcCCCCCCCC---CcceeecccCcccchH
Q 047897 78 --------HDRLNVISKDALKTEFP---QFDLVVANIPYGISSP 110 (232)
Q Consensus 78 --------~~~~~~~~~D~~~~~~~---~~D~Vi~n~p~~~~~~ 110 (232)
.++++++++|..+...+ .||+||+|+||-...+
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e 218 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPN 218 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcc
Confidence 14799999999875432 5999999999987643
No 89
>PLN03075 nicotianamine synthase; Provisional
Probab=99.30 E-value=2.7e-11 Score=98.85 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=64.3
Q ss_pred HHhcCCCCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhh-cCCCccEEEEEcCCCCCCC--CC
Q 047897 23 VRKSSINPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAAD-SGFHDRLNVISKDALKTEF--PQ 95 (232)
Q Consensus 23 ~~~~~~~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~--~~ 95 (232)
+......++++|+|||||+|.+|..++. ...+++++|+|+++++.|++.+.. .++.++++|..+|+.+... ..
T Consensus 116 L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 116 LSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKE 195 (296)
T ss_pred HHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCC
Confidence 3333334678999999999976555443 467899999999999999999964 6776789999999998643 58
Q ss_pred cceeeccc
Q 047897 96 FDLVVANI 103 (232)
Q Consensus 96 ~D~Vi~n~ 103 (232)
||+|+++.
T Consensus 196 FDlVF~~A 203 (296)
T PLN03075 196 YDVVFLAA 203 (296)
T ss_pred cCEEEEec
Confidence 99999873
No 90
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=4.5e-11 Score=104.34 Aligned_cols=90 Identities=23% Similarity=0.347 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE- 92 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~- 92 (232)
.....+...+++.++++|||+|||+|..+..+++. ..+|+|+|+++.+++.+++++...|+ .+++++++|+.+..
T Consensus 237 ~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 237 ESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-TNIETKALDARKVHE 315 (444)
T ss_pred hHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCCcccccc
Confidence 34445556677788899999999999999999872 57999999999999999999999888 46999999998763
Q ss_pred -C-CCcceeecccCccc
Q 047897 93 -F-PQFDLVVANIPYGI 107 (232)
Q Consensus 93 -~-~~~D~Vi~n~p~~~ 107 (232)
. ..||.|++|+|+..
T Consensus 316 ~~~~~fD~Vl~D~Pcsg 332 (444)
T PRK14902 316 KFAEKFDKILVDAPCSG 332 (444)
T ss_pred hhcccCCEEEEcCCCCC
Confidence 2 47999999999753
No 91
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.30 E-value=3.6e-11 Score=95.89 Aligned_cols=85 Identities=26% Similarity=0.308 Sum_probs=67.6
Q ss_pred HHHHHHhcC---CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897 19 LDSIVRKSS---INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ 95 (232)
Q Consensus 19 ~~~i~~~~~---~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~ 95 (232)
.+.+++.+. ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++...+..+++.+..+|+. ...++
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~ 127 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE-SLLGR 127 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch-hccCC
Confidence 334444443 34677999999999999999998888899999999999999999987766457999999943 33458
Q ss_pred cceeecccC
Q 047897 96 FDLVVANIP 104 (232)
Q Consensus 96 ~D~Vi~n~p 104 (232)
||+|+++-.
T Consensus 128 fD~v~~~~~ 136 (230)
T PRK07580 128 FDTVVCLDV 136 (230)
T ss_pred cCEEEEcch
Confidence 999987643
No 92
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.30 E-value=2.8e-11 Score=93.01 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=64.0
Q ss_pred HHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceee
Q 047897 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVV 100 (232)
Q Consensus 22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi 100 (232)
+++.++.-++.++||+|||.|..+..|++.|..|+|+|+|+..++.+++.+...+++ ++....|+.+...+ .+|+|+
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~ 99 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIV 99 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEE
Confidence 444455556779999999999999999999999999999999999999999888874 99999999887765 799998
Q ss_pred ccc
Q 047897 101 ANI 103 (232)
Q Consensus 101 ~n~ 103 (232)
+..
T Consensus 100 st~ 102 (192)
T PF03848_consen 100 STV 102 (192)
T ss_dssp EES
T ss_pred EEE
Confidence 743
No 93
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.29 E-value=2.5e-11 Score=101.34 Aligned_cols=99 Identities=23% Similarity=0.399 Sum_probs=86.0
Q ss_pred cccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-----------------------------------
Q 047897 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK----------------------------------- 53 (232)
Q Consensus 9 gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~----------------------------------- 53 (232)
|+--| ++.++..|+...+..++..++|.=||+|.+..+.+-.+.
T Consensus 171 g~ApL-ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~ 249 (381)
T COG0116 171 GPAPL-KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERAR 249 (381)
T ss_pred CCCCc-hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHh
Confidence 33334 388999999999999999999999999999998876332
Q ss_pred ------eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccCcccc
Q 047897 54 ------KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGIS 108 (232)
Q Consensus 54 ------~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p~~~~ 108 (232)
.++|+|+|+.+++.|+.|+...|+.+.++|.++|+.++..+ ++|+||+||||+.-
T Consensus 250 ~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR 312 (381)
T COG0116 250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER 312 (381)
T ss_pred hcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh
Confidence 37799999999999999999999988999999999988655 89999999999843
No 94
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.28 E-value=4.3e-11 Score=101.16 Aligned_cols=86 Identities=21% Similarity=0.224 Sum_probs=71.6
Q ss_pred HHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCCC
Q 047897 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFPQ 95 (232)
Q Consensus 22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~~ 95 (232)
+++.+....+..+||||||+|.++..++. +...++|+|+++.+++.+.+++...++ +|+.++++|+..+ +..+
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCc
Confidence 34444445667899999999999999998 468999999999999999999998888 5899999999653 3348
Q ss_pred cceeecccCcccc
Q 047897 96 FDLVVANIPYGIS 108 (232)
Q Consensus 96 ~D~Vi~n~p~~~~ 108 (232)
+|.|++|.|..|.
T Consensus 193 ~D~I~lnFPdPW~ 205 (390)
T PRK14121 193 VEKIFVHFPVPWD 205 (390)
T ss_pred eeEEEEeCCCCcc
Confidence 9999999887664
No 95
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.28 E-value=4.1e-11 Score=93.42 Aligned_cols=89 Identities=28% Similarity=0.432 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
++.+.+...+++.+++.++++|||+|||+|.++..++. .+.+|+++|+|+.+++.+++++...+. ++++++.+|+.+
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~ 101 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPE 101 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHH
Confidence 45566776788888888899999999999999999876 458999999999999999999988877 579999999865
Q ss_pred C-C-C-CCcceeecc
Q 047897 91 T-E-F-PQFDLVVAN 102 (232)
Q Consensus 91 ~-~-~-~~~D~Vi~n 102 (232)
. + . +.+|.++.+
T Consensus 102 ~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 102 CLAQLAPAPDRVCIE 116 (196)
T ss_pred HHhhCCCCCCEEEEE
Confidence 2 1 1 245666543
No 96
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.28 E-value=6.5e-11 Score=102.81 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF 93 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (232)
......++..+++.++++|||+|||+|..|..+++. ..+|+|+|+++.+++.+++++...|+..++.+..+|....+.
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 345556677788889999999999999999999883 479999999999999999999998875344557788765432
Q ss_pred ----CCcceeecccCcccch-----HHHHHHhcCCCCccceEehhHHHH---HHHHhcCCCCCcccchhh
Q 047897 94 ----PQFDLVVANIPYGISS-----PLVAKLVYGTKSFRSATLLLQKEF---ARRLLASPGDSEFNRLAV 151 (232)
Q Consensus 94 ----~~~D~Vi~n~p~~~~~-----~~l~~~~~~~~~~~~~~~~~q~e~---~~rl~~~~g~~~~~~~~~ 151 (232)
.+||.|++|.|+.... +.+.+.... ... ......|.++ +.+++.+.|...|..+++
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~-~~~-~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKP-RDI-AELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCH-HHH-HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3799999999976542 111100000 000 0111235555 445566777777777666
No 97
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=2.7e-11 Score=95.92 Aligned_cols=95 Identities=21% Similarity=0.371 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcC---CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 16 QRVLDSIVRKSS---INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 16 ~~~~~~i~~~~~---~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
+.+++.+++..+ ...+..+||+|||+|.++..++. ..+.|+|+|.++.++..|.+|+...++.+++.+++-+...
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 345555555443 23466899999999999999998 5689999999999999999999999988899998654433
Q ss_pred ----C---CCCCcceeecccCcccchH
Q 047897 91 ----T---EFPQFDLVVANIPYGISSP 110 (232)
Q Consensus 91 ----~---~~~~~D~Vi~n~p~~~~~~ 110 (232)
. .....|++++|+||-.+.+
T Consensus 211 d~~~~~~l~~~~~dllvsNPPYI~~dD 237 (328)
T KOG2904|consen 211 DASDEHPLLEGKIDLLVSNPPYIRKDD 237 (328)
T ss_pred ccccccccccCceeEEecCCCcccccc
Confidence 2 1237899999999987765
No 98
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.27 E-value=3.4e-11 Score=88.66 Aligned_cols=96 Identities=26% Similarity=0.361 Sum_probs=81.6
Q ss_pred ccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCcc
Q 047897 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDR 80 (232)
Q Consensus 4 ~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 80 (232)
--|..|.---++.-++++|...+++..|..|||+|+|+|.+|.+++++ ...++++|.|++++.++.+.. +.
T Consensus 22 ~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~ 95 (194)
T COG3963 22 NPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PG 95 (194)
T ss_pred CCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CC
Confidence 345566666677889999999999999999999999999999999993 578999999999999999887 45
Q ss_pred EEEEEcCCCCCC-------CCCcceeecccCc
Q 047897 81 LNVISKDALKTE-------FPQFDLVVANIPY 105 (232)
Q Consensus 81 ~~~~~~D~~~~~-------~~~~D~Vi~n~p~ 105 (232)
+.+++||+.++. .+.||.|||.+|.
T Consensus 96 ~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 96 VNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred ccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 779999998875 1268999997774
No 99
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.27 E-value=2.6e-11 Score=99.98 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccCc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPY 105 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p~ 105 (232)
++.+|||+|||+|..+..++..+.+|+|+|+|+.+++.+++++...++ ++++..+|+...+.+ +||+|+++..+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl 194 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVL 194 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchh
Confidence 455999999999999999999889999999999999999999988776 588899998776544 79999987543
No 100
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.27 E-value=4e-11 Score=93.29 Aligned_cols=77 Identities=27% Similarity=0.328 Sum_probs=65.6
Q ss_pred CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----CCCcceeecc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----FPQFDLVVAN 102 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~D~Vi~n 102 (232)
.+.++||||||+|.++..++. +...++|+|+++.+++.|+++....++ +|++++++|+.+++ ...+|.|+.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456899999999999999998 467999999999999999999988887 48999999997642 2379999999
Q ss_pred cCccc
Q 047897 103 IPYGI 107 (232)
Q Consensus 103 ~p~~~ 107 (232)
.|-.+
T Consensus 95 ~pdpw 99 (194)
T TIGR00091 95 FPDPW 99 (194)
T ss_pred CCCcC
Confidence 87544
No 101
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.27 E-value=8.2e-12 Score=93.27 Aligned_cols=78 Identities=29% Similarity=0.388 Sum_probs=61.3
Q ss_pred CEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC----C-cceeecccCcc
Q 047897 32 DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP----Q-FDLVVANIPYG 106 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----~-~D~Vi~n~p~~ 106 (232)
..|+|+.||.|+.+..+++...+|+|+|+|+..++.|+.|++.+|+.++++++++|+.+.... . +|+|+.+||++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 369999999999999999999999999999999999999999999888999999999886322 2 79999999988
Q ss_pred cch
Q 047897 107 ISS 109 (232)
Q Consensus 107 ~~~ 109 (232)
..+
T Consensus 81 Gp~ 83 (163)
T PF09445_consen 81 GPS 83 (163)
T ss_dssp SGG
T ss_pred Ccc
Confidence 653
No 102
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=4.6e-11 Score=97.23 Aligned_cols=76 Identities=30% Similarity=0.390 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccC
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIP 104 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p 104 (232)
.++.+|||+|||+|.++.+.++.+ .+|+|+|+||.+++.+++|++.++++..+.....+..+.+.. +||+|++|+-
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence 478899999999999999999955 679999999999999999999998754344445555555553 8999999973
No 103
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.27 E-value=2.2e-11 Score=93.56 Aligned_cols=95 Identities=25% Similarity=0.436 Sum_probs=74.5
Q ss_pred CHHHHHHHHHhcCCC--CCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 15 NQRVLDSIVRKSSIN--PDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 15 ~~~~~~~i~~~~~~~--~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
...+.+.+.+.+... ++.++||+.||+|.++.+.+.++ .+|+.||.|+..+..+++|+...+..++++++.+|+...
T Consensus 25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence 356777777777643 78899999999999999998865 799999999999999999999988866799999997653
Q ss_pred ------CCCCcceeecccCcccch
Q 047897 92 ------EFPQFDLVVANIPYGISS 109 (232)
Q Consensus 92 ------~~~~~D~Vi~n~p~~~~~ 109 (232)
....||+|+.+|||....
T Consensus 105 l~~~~~~~~~fDiIflDPPY~~~~ 128 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPYAKGL 128 (183)
T ss_dssp HHHHHHCTS-EEEEEE--STTSCH
T ss_pred HHhhcccCCCceEEEECCCcccch
Confidence 235899999999998774
No 104
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.26 E-value=8.8e-11 Score=96.86 Aligned_cols=76 Identities=32% Similarity=0.368 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP 104 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p 104 (232)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++..+++..++.+..+|.......+||+|++|+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL 234 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC
Confidence 467899999999999999888754 5899999999999999999998887667888888755444458999999864
No 105
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.26 E-value=4.6e-11 Score=93.57 Aligned_cols=70 Identities=26% Similarity=0.344 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeeccc
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVANI 103 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n~ 103 (232)
+.++.+|||+|||+|..+..+++. +.+++|+|+|+++++.|+++. +++.+.++|+.+ +. .+||+|+++-
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 346778999999999999999874 689999999999999999875 347788999887 44 3899999864
Q ss_pred C
Q 047897 104 P 104 (232)
Q Consensus 104 p 104 (232)
.
T Consensus 114 v 114 (204)
T TIGR03587 114 V 114 (204)
T ss_pred h
Confidence 3
No 106
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.26 E-value=3.7e-11 Score=105.91 Aligned_cols=94 Identities=21% Similarity=0.370 Sum_probs=76.5
Q ss_pred CcccccCCHHH--HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE
Q 047897 8 KGQHILTNQRV--LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84 (232)
Q Consensus 8 ~gq~fl~~~~~--~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 84 (232)
+|..|..++.+ .+.+++.+.+.++.+|||||||+|.++..+++ .+.+|+|+|+|+.+++.|+++..... .++++.
T Consensus 242 ~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~~v~~~ 319 (475)
T PLN02336 242 FGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--CSVEFE 319 (475)
T ss_pred hCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--CceEEE
Confidence 56666665554 46677777777888999999999999998887 46799999999999999998875432 579999
Q ss_pred EcCCCCCCCC--Ccceeeccc
Q 047897 85 SKDALKTEFP--QFDLVVANI 103 (232)
Q Consensus 85 ~~D~~~~~~~--~~D~Vi~n~ 103 (232)
.+|+.+.+++ +||+|++.-
T Consensus 320 ~~d~~~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 320 VADCTKKTYPDNSFDVIYSRD 340 (475)
T ss_pred EcCcccCCCCCCCEEEEEECC
Confidence 9999887653 699999853
No 107
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.25 E-value=9e-11 Score=92.15 Aligned_cols=83 Identities=27% Similarity=0.424 Sum_probs=70.5
Q ss_pred HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cC------CeEEEEEcCHHHHHHHHHHHhhcCCCc--cEEEEEcCC
Q 047897 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VS------KKVHAIEIDERMVEILNRRAADSGFHD--RLNVISKDA 88 (232)
Q Consensus 19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~------~~v~~vD~~~~~~~~a~~~~~~~~~~~--~~~~~~~D~ 88 (232)
-+..+..+++.++.++||+|||+|.+++.+++ .. .+|+.+|++++|++.++++....++.+ ++.++.+|+
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 34456778888899999999999999999998 22 789999999999999999997766643 499999999
Q ss_pred CCCCCC--Ccceeec
Q 047897 89 LKTEFP--QFDLVVA 101 (232)
Q Consensus 89 ~~~~~~--~~D~Vi~ 101 (232)
+++|++ ++|..+.
T Consensus 169 E~LpFdd~s~D~yTi 183 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTI 183 (296)
T ss_pred ccCCCCCCcceeEEE
Confidence 999887 7897664
No 108
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.24 E-value=2.6e-11 Score=107.94 Aligned_cols=101 Identities=22% Similarity=0.357 Sum_probs=78.6
Q ss_pred CCCcccccCCHHHHHHHHHhcCCC-------CCCEEEEEcCCccHhHHHHHhc----------CCeEEEEEcCHHHHHHH
Q 047897 6 KSKGQHILTNQRVLDSIVRKSSIN-------PDDTVLEIGPGTGNLTLKLLEV----------SKKVHAIEIDERMVEIL 68 (232)
Q Consensus 6 k~~gq~fl~~~~~~~~i~~~~~~~-------~~~~vLDiG~G~G~~t~~l~~~----------~~~v~~vD~~~~~~~~a 68 (232)
|++|| |+|++.+++.|++.+... .+.+|||.|||+|.+...++.. ...++|+|+|+.+++.+
T Consensus 1 K~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a 79 (524)
T TIGR02987 1 KAYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA 79 (524)
T ss_pred CCCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence 67899 778899999999876322 3458999999999999988762 15789999999999999
Q ss_pred HHHHhhcCCCccEEEEEcCCCCCC-------CCCcceeecccCcccc
Q 047897 69 NRRAADSGFHDRLNVISKDALKTE-------FPQFDLVVANIPYGIS 108 (232)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~D~Vi~n~p~~~~ 108 (232)
+.++...+. ..+.+.++|.+... .+.||+||+||||...
T Consensus 80 ~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 80 KKLLGEFAL-LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HHHHhhcCC-CCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence 999876652 23567777755421 2379999999999864
No 109
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.24 E-value=3.5e-11 Score=94.20 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC-CCCC----CCCcceeecc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA-LKTE----FPQFDLVVAN 102 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~-~~~~----~~~~D~Vi~n 102 (232)
++.+|||+|||+|.++..+++ ...+|+|+|+++.+++.+++++...+. ++++++++|+ ..++ ..+||.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 577999999999999999987 357899999999999999999988776 5799999999 5443 3479999998
Q ss_pred cCc
Q 047897 103 IPY 105 (232)
Q Consensus 103 ~p~ 105 (232)
.|.
T Consensus 119 ~~~ 121 (202)
T PRK00121 119 FPD 121 (202)
T ss_pred CCC
Confidence 653
No 110
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.23 E-value=3e-11 Score=110.64 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=77.0
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDAL 89 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~ 89 (232)
++.|....+..+..+ .++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++|+..+++. .+++++++|+.
T Consensus 522 ~flDqr~~R~~~~~~--~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 522 LFLDHRPTRRMIGQM--AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred ECHHHHHHHHHHHHh--cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence 444555555555443 257899999999999999999865 47999999999999999999998885 58999999987
Q ss_pred CCC---CCCcceeecccCcccc
Q 047897 90 KTE---FPQFDLVVANIPYGIS 108 (232)
Q Consensus 90 ~~~---~~~~D~Vi~n~p~~~~ 108 (232)
++. ..+||+|++||||...
T Consensus 600 ~~l~~~~~~fDlIilDPP~f~~ 621 (702)
T PRK11783 600 AWLKEAREQFDLIFIDPPTFSN 621 (702)
T ss_pred HHHHHcCCCcCEEEECCCCCCC
Confidence 642 2479999999998664
No 111
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.23 E-value=3.1e-11 Score=82.32 Aligned_cols=67 Identities=33% Similarity=0.520 Sum_probs=56.1
Q ss_pred EEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccCc
Q 047897 35 LEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPY 105 (232)
Q Consensus 35 LDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p~ 105 (232)
||+|||+|..+..+++. +.+|+++|+++++++.++++... .++.++.+|+.+++++ +||+|+++-.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccce
Confidence 89999999999999997 89999999999999999999875 3466999999999875 89999987543
No 112
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.22 E-value=4.2e-11 Score=101.32 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-- 93 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-- 93 (232)
..+++.+.+.++..+ .+|||+|||+|.++..+++...+|+|+|+++++++.+++|+..+++ ++++++.+|+.++..
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~ 261 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEFTQAM 261 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHHH
Confidence 344555555554333 4699999999999999998778999999999999999999999887 479999999976321
Q ss_pred ---------------C-CcceeecccCcccchHHH-HHHh
Q 047897 94 ---------------P-QFDLVVANIPYGISSPLV-AKLV 116 (232)
Q Consensus 94 ---------------~-~~D~Vi~n~p~~~~~~~l-~~~~ 116 (232)
. .+|+|+.|||.....+.+ ..+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~ 301 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQ 301 (353)
T ss_pred hhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHH
Confidence 1 379999999965544444 4443
No 113
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.22 E-value=6.2e-11 Score=100.67 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=79.1
Q ss_pred ccCCHHHHHHHHHh----cCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897 12 ILTNQRVLDSIVRK----SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87 (232)
Q Consensus 12 fl~~~~~~~~i~~~----~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D 87 (232)
|-.|+.+.+.+++. +... +.+|||++||+|.++..+++...+|+|+|+++.+++.+++|+..+++ ++++++.+|
T Consensus 185 ~Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d 262 (362)
T PRK05031 185 TQPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMS 262 (362)
T ss_pred eccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECC
Confidence 33455555555544 3322 35799999999999999988778999999999999999999998887 489999999
Q ss_pred CCCCC--C---------------C-CcceeecccCcccchHHH-HHHhc
Q 047897 88 ALKTE--F---------------P-QFDLVVANIPYGISSPLV-AKLVY 117 (232)
Q Consensus 88 ~~~~~--~---------------~-~~D~Vi~n~p~~~~~~~l-~~~~~ 117 (232)
+.+.- . . .||+|+.|||+....+.+ ..+..
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~ 311 (362)
T PRK05031 263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA 311 (362)
T ss_pred HHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc
Confidence 97631 0 1 489999999986544444 44433
No 114
>PRK05785 hypothetical protein; Provisional
Probab=99.22 E-value=5.4e-11 Score=94.67 Aligned_cols=66 Identities=21% Similarity=0.353 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccC
Q 047897 30 PDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIP 104 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p 104 (232)
++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.+++.. .++++|+++++++ +||+|+++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecCh
Confidence 4679999999999999999886 589999999999999988641 3578999888764 7999998754
No 115
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.21 E-value=1.5e-10 Score=93.62 Aligned_cols=71 Identities=34% Similarity=0.462 Sum_probs=58.4
Q ss_pred CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPY 105 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~ 105 (232)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++..+++..++.+..+|. +||+|++|+..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~------~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL------KADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC------CcCEEEEcCcH
Confidence 478899999999999999888754 459999999999999999998877644566555543 79999998753
No 116
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.20 E-value=2.6e-10 Score=94.94 Aligned_cols=84 Identities=19% Similarity=0.451 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP 94 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~ 94 (232)
.+.+.+++.++..++.+|||||||+|.++..+++ +..+++++|. +.+++.+++++...++.++++++.+|+.+.+.+
T Consensus 136 ~~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 136 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred hHHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence 3456677777788889999999999999999998 3578999997 789999999999888877899999999877667
Q ss_pred Ccceeec
Q 047897 95 QFDLVVA 101 (232)
Q Consensus 95 ~~D~Vi~ 101 (232)
.+|+|+.
T Consensus 215 ~~D~v~~ 221 (306)
T TIGR02716 215 EADAVLF 221 (306)
T ss_pred CCCEEEe
Confidence 7898764
No 117
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.20 E-value=1.4e-10 Score=96.31 Aligned_cols=86 Identities=22% Similarity=0.185 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCC---CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCC----CccEEEEEcCCC
Q 047897 17 RVLDSIVRKSSI---NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF----HDRLNVISKDAL 89 (232)
Q Consensus 17 ~~~~~i~~~~~~---~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~ 89 (232)
.+++.+++.+.. .++.+|||+|||+|.++..+++.+.+|+|+|+++.|++.++++....+. ..++++..+|+.
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 455666666543 2577999999999999999999889999999999999999999875421 135788999986
Q ss_pred CCCCCCcceeeccc
Q 047897 90 KTEFPQFDLVVANI 103 (232)
Q Consensus 90 ~~~~~~~D~Vi~n~ 103 (232)
+.+ +.||+|++.-
T Consensus 208 ~l~-~~fD~Vv~~~ 220 (315)
T PLN02585 208 SLS-GKYDTVTCLD 220 (315)
T ss_pred hcC-CCcCEEEEcC
Confidence 653 5899998753
No 118
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.9e-10 Score=99.08 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP- 94 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~- 94 (232)
+.+++...+.++..++++|||+-||.|.++..++....+|+|+|+++++++.|++|++.++. .|++|+.+|++++...
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i-~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHHhhhc
Confidence 33444455566777889999999999999999999999999999999999999999999998 4699999999886432
Q ss_pred ----CcceeecccCcccch-HHHHHHhcC
Q 047897 95 ----QFDLVVANIPYGISS-PLVAKLVYG 118 (232)
Q Consensus 95 ----~~D~Vi~n~p~~~~~-~~l~~~~~~ 118 (232)
.+|.|+.|||-.... ..+..+...
T Consensus 358 ~~~~~~d~VvvDPPR~G~~~~~lk~l~~~ 386 (432)
T COG2265 358 WEGYKPDVVVVDPPRAGADREVLKQLAKL 386 (432)
T ss_pred cccCCCCEEEECCCCCCCCHHHHHHHHhc
Confidence 679999999987666 444444443
No 119
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.19 E-value=1.9e-10 Score=92.02 Aligned_cols=91 Identities=24% Similarity=0.234 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89 (232)
Q Consensus 13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~ 89 (232)
...+...+.+...+...+..+|||+|||+|+-+..++. ...+|+++|+|+++++.|++++...|+.++++++.+|+.
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 44555555554555556778999999999998888876 257999999999999999999999998788999999998
Q ss_pred CCC--------CCCcceeeccc
Q 047897 90 KTE--------FPQFDLVVANI 103 (232)
Q Consensus 90 ~~~--------~~~~D~Vi~n~ 103 (232)
+.- .++||+|+.+.
T Consensus 131 ~~L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 131 SALDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred HHHHHHHhCCCCCCCCEEEECC
Confidence 741 24799999875
No 120
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.18 E-value=1.5e-10 Score=94.81 Aligned_cols=80 Identities=18% Similarity=0.331 Sum_probs=66.8
Q ss_pred cCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceee
Q 047897 26 SSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVV 100 (232)
Q Consensus 26 ~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi 100 (232)
..+.++++|||+|||+|..+..++. ...+|+|+|+++.+++.++++....+. ++++++.+|+.+++++ .||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEE
Confidence 4567889999999999998877666 235799999999999999999988777 5899999999887754 799999
Q ss_pred cccCcc
Q 047897 101 ANIPYG 106 (232)
Q Consensus 101 ~n~p~~ 106 (232)
+|..++
T Consensus 152 ~~~v~~ 157 (272)
T PRK11873 152 SNCVIN 157 (272)
T ss_pred EcCccc
Confidence 886433
No 121
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.18 E-value=9.6e-11 Score=99.11 Aligned_cols=99 Identities=26% Similarity=0.333 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-- 93 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-- 93 (232)
..+++.+++.++..++ .|||+.||.|.++..+++...+|+|||+++++++.|++|+..+++ .|++|+.+++.++..
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHH
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHH
Confidence 3455555566776655 799999999999999999999999999999999999999999998 689999988765411
Q ss_pred ----------------CCcceeecccCcccchHHHHHHh
Q 047897 94 ----------------PQFDLVVANIPYGISSPLVAKLV 116 (232)
Q Consensus 94 ----------------~~~D~Vi~n~p~~~~~~~l~~~~ 116 (232)
..+|+|+.|||-....+.+...+
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 14789999999876665444444
No 122
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.17 E-value=2.4e-10 Score=94.81 Aligned_cols=98 Identities=14% Similarity=0.061 Sum_probs=69.6
Q ss_pred cCCCcccccCCHHHHHH-----HHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCC
Q 047897 5 HKSKGQHILTNQRVLDS-----IVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH 78 (232)
Q Consensus 5 ~k~~gq~fl~~~~~~~~-----i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~ 78 (232)
+..+-| +.++.++... ++..+...++++|||||||+|.++..++..+ ..|+|+|.++.|+..++..-...+..
T Consensus 92 ~~~l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~ 170 (314)
T TIGR00452 92 PFELSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND 170 (314)
T ss_pred Cccccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC
Confidence 334444 4456666444 4445566678999999999999999888855 57999999999987654332222222
Q ss_pred ccEEEEEcCCCCCCC-CCcceeeccc
Q 047897 79 DRLNVISKDALKTEF-PQFDLVVANI 103 (232)
Q Consensus 79 ~~~~~~~~D~~~~~~-~~~D~Vi~n~ 103 (232)
.++.+..+|+.+++. ..||+|+++-
T Consensus 171 ~~v~~~~~~ie~lp~~~~FD~V~s~g 196 (314)
T TIGR00452 171 KRAILEPLGIEQLHELYAFDTVFSMG 196 (314)
T ss_pred CCeEEEECCHHHCCCCCCcCEEEEcc
Confidence 578899999988764 4899999863
No 123
>PRK04266 fibrillarin; Provisional
Probab=99.16 E-value=4.5e-10 Score=89.18 Aligned_cols=85 Identities=20% Similarity=0.316 Sum_probs=67.3
Q ss_pred HHHHHHHH---hcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 17 RVLDSIVR---KSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 17 ~~~~~i~~---~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
+....++. .+++.++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.+.+++... .|+.++.+|+.+.
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~ 132 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKP 132 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCc
Confidence 44444444 578889999999999999999999984 368999999999999888777643 4799999998752
Q ss_pred ----CC-CCcceeecccC
Q 047897 92 ----EF-PQFDLVVANIP 104 (232)
Q Consensus 92 ----~~-~~~D~Vi~n~p 104 (232)
+. +.+|+|+++++
T Consensus 133 ~~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 133 ERYAHVVEKVDVIYQDVA 150 (226)
T ss_pred chhhhccccCCEEEECCC
Confidence 11 36899998765
No 124
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.16 E-value=1.9e-10 Score=105.44 Aligned_cols=95 Identities=22% Similarity=0.361 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHhc-----------------------------------------
Q 047897 14 TNQRVLDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLEV----------------------------------------- 51 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~~----------------------------------------- 51 (232)
..+.++..|+...+. .++..++|.+||+|.+..+.+..
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 347899999998887 66889999999999999887541
Q ss_pred ---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC----CcceeecccCcccc
Q 047897 52 ---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP----QFDLVVANIPYGIS 108 (232)
Q Consensus 52 ---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----~~D~Vi~n~p~~~~ 108 (232)
..+++|+|+|+.+++.|++|+...|+.+.+++.++|+.+++.+ ++|+|++||||...
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER 316 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence 1269999999999999999999999877899999999887543 59999999999744
No 125
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.16 E-value=2.9e-10 Score=90.96 Aligned_cols=89 Identities=24% Similarity=0.441 Sum_probs=73.6
Q ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
.......+++.+...++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++...+...++.++.+|+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 3456667777777777889999999999999999883 3899999999999999999987655546799999999887
Q ss_pred CCC--Ccceeeccc
Q 047897 92 EFP--QFDLVVANI 103 (232)
Q Consensus 92 ~~~--~~D~Vi~n~ 103 (232)
+.+ .+|+|+++.
T Consensus 116 ~~~~~~~D~I~~~~ 129 (239)
T PRK00216 116 PFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCCCccEEEEec
Confidence 643 799998753
No 126
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.15 E-value=1.6e-10 Score=88.08 Aligned_cols=82 Identities=23% Similarity=0.280 Sum_probs=61.4
Q ss_pred hcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-CCCcceee-cc
Q 047897 25 KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-FPQFDLVV-AN 102 (232)
Q Consensus 25 ~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~~D~Vi-~n 102 (232)
.++-..-.++||+|||.|.+|..|+.+..+++++|+++.+++.|+++.... ++++++++|+.+.. .+.||+|+ +-
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 344344568999999999999999999999999999999999999999764 58999999998764 34899766 46
Q ss_pred cCcccch
Q 047897 103 IPYGISS 109 (232)
Q Consensus 103 ~p~~~~~ 109 (232)
+-|+.+.
T Consensus 115 VlYYL~~ 121 (201)
T PF05401_consen 115 VLYYLDD 121 (201)
T ss_dssp -GGGSSS
T ss_pred HhHcCCC
Confidence 7788764
No 127
>PRK04148 hypothetical protein; Provisional
Probab=99.15 E-value=4.4e-10 Score=81.06 Aligned_cols=80 Identities=23% Similarity=0.325 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP- 94 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~- 94 (232)
.+.+.+.+.+...++.+++|||||+|. ++..|.+.+..|+|+|+++..++.++++. ++++.+|.++.+.+
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHHH
Confidence 456666666655567889999999996 88888888999999999999988887652 67999999988765
Q ss_pred --Ccceeec-ccC
Q 047897 95 --QFDLVVA-NIP 104 (232)
Q Consensus 95 --~~D~Vi~-n~p 104 (232)
.+|+|.+ ++|
T Consensus 75 y~~a~liysirpp 87 (134)
T PRK04148 75 YKNAKLIYSIRPP 87 (134)
T ss_pred HhcCCEEEEeCCC
Confidence 6899987 555
No 128
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.15 E-value=2.2e-10 Score=95.76 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=62.9
Q ss_pred HHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccce
Q 047897 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDL 98 (232)
Q Consensus 21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~ 98 (232)
.+...++..++.+|||||||+|.++..++..+ ..|+|+|.++.++..++......+...++.++.+|+.+++.+ .||+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~ 192 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDT 192 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCE
Confidence 34445555578899999999999999998854 569999999999876554433222225799999999988754 7999
Q ss_pred eecc
Q 047897 99 VVAN 102 (232)
Q Consensus 99 Vi~n 102 (232)
|++.
T Consensus 193 V~s~ 196 (322)
T PRK15068 193 VFSM 196 (322)
T ss_pred EEEC
Confidence 9984
No 129
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.14 E-value=1.7e-10 Score=87.76 Aligned_cols=74 Identities=27% Similarity=0.304 Sum_probs=59.8
Q ss_pred HHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC----CCCC
Q 047897 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK----TEFP 94 (232)
Q Consensus 20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~----~~~~ 94 (232)
+.|.+++ .++.+|||+|||.|.+...|.+ ++.+.+|+|+|++.+..|.++ .+.++++|+.+ ++..
T Consensus 5 ~~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 5 QIIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCC
Confidence 3455555 4789999999999999999988 788999999999988877654 36799999875 3445
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
+||.||.+-
T Consensus 75 sFD~VIlsq 83 (193)
T PF07021_consen 75 SFDYVILSQ 83 (193)
T ss_pred CccEEehHh
Confidence 899999753
No 130
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.13 E-value=7.5e-10 Score=84.12 Aligned_cols=93 Identities=28% Similarity=0.423 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-
Q 047897 16 QRVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT- 91 (232)
Q Consensus 16 ~~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~- 91 (232)
..+.+.+.+.+.. -.|.++||+-+|+|.++.+.+.+ ..+++.||.|...+..+++|....+...+++++..|+...
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 5678888888865 47889999999999999999996 5899999999999999999999988778899999999854
Q ss_pred ---CCC-CcceeecccCcccc
Q 047897 92 ---EFP-QFDLVVANIPYGIS 108 (232)
Q Consensus 92 ---~~~-~~D~Vi~n~p~~~~ 108 (232)
... +||+|+.+|||+..
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~ 127 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKG 127 (187)
T ss_pred HhcCCCCcccEEEeCCCCccc
Confidence 111 49999999999844
No 131
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.12 E-value=1.2e-10 Score=93.20 Aligned_cols=89 Identities=26% Similarity=0.367 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHhcCC---CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897 14 TNQRVLDSIVRKSSI---NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~---~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ 88 (232)
..+.+...+++.+.. ..+.+|||+|||+|.++..+++. ..+++++|+++.+++.++++.. +++.++.+|+
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~ 89 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch
Confidence 334555666655542 33468999999999999999883 4678999999999999988764 3688999999
Q ss_pred CCCCCC--CcceeecccCccc
Q 047897 89 LKTEFP--QFDLVVANIPYGI 107 (232)
Q Consensus 89 ~~~~~~--~~D~Vi~n~p~~~ 107 (232)
.+.+.+ +||+|+++...++
T Consensus 90 ~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 90 EKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred hhCCCCCCceeEEEEhhhhhh
Confidence 987643 7999999865543
No 132
>PRK06202 hypothetical protein; Provisional
Probab=99.11 E-value=5.5e-10 Score=89.35 Aligned_cols=76 Identities=24% Similarity=0.245 Sum_probs=57.3
Q ss_pred CCCCCEEEEEcCCccHhHHHHHh----c--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--CCCccee
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLE----V--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--FPQFDLV 99 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~----~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~D~V 99 (232)
..++.+|||+|||+|.++..+++ . ..+|+|+|+++++++.|+++.... ++++..+|+..++ ..+||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEE
Confidence 34667999999999999988875 1 359999999999999999886543 3555555544443 3489999
Q ss_pred ecccCccc
Q 047897 100 VANIPYGI 107 (232)
Q Consensus 100 i~n~p~~~ 107 (232)
+++..++.
T Consensus 134 ~~~~~lhh 141 (232)
T PRK06202 134 TSNHFLHH 141 (232)
T ss_pred EECCeeec
Confidence 99876543
No 133
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.11 E-value=5.4e-10 Score=83.52 Aligned_cols=158 Identities=22% Similarity=0.332 Sum_probs=95.0
Q ss_pred HHHHHHHhcC---CCCC-CEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 18 VLDSIVRKSS---INPD-DTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 18 ~~~~i~~~~~---~~~~-~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
+++.+.+... +.+. ++|||+|||.|.+...|++. ...++|+|.++.+++.|+..++..++++.++|.+.|+.+.
T Consensus 51 iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 51 IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP 130 (227)
T ss_pred HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence 4444444433 3333 49999999999999999993 3569999999999999999999999866699999999986
Q ss_pred CCC--CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhh----eeeee--eeeEEEE
Q 047897 92 EFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAV----NVKLV--ADVEFVM 163 (232)
Q Consensus 92 ~~~--~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~----~~~~~--~~~~~~~ 163 (232)
.+. +||+|.--=.+...+ +. +......+.+.....++++++.|--....+.. ++..+ ...+.+.
T Consensus 131 ~~~~~qfdlvlDKGT~DAis------Ls--~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 131 DFLSGQFDLVLDKGTLDAIS------LS--PDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLS 202 (227)
T ss_pred cccccceeEEeecCceeeee------cC--CCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEE
Confidence 543 677766321111000 00 01111112344556777777444211111100 01111 1255666
Q ss_pred EecCCCcccCCCccEEEEEE
Q 047897 164 DVSKRDFLPCPKVDSSVVII 183 (232)
Q Consensus 164 ~~~~~~f~P~p~v~s~~~~~ 183 (232)
.+|...|.---++.+++..+
T Consensus 203 tvp~ptF~FgG~~G~tvt~v 222 (227)
T KOG1271|consen 203 TVPTPTFMFGGSVGSTVTSV 222 (227)
T ss_pred eeccceEEeccccccEEEEE
Confidence 77776776666666555433
No 134
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.11 E-value=4.2e-10 Score=87.34 Aligned_cols=81 Identities=27% Similarity=0.440 Sum_probs=61.8
Q ss_pred CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-CCcceeecccC
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-PQFDLVVANIP 104 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~D~Vi~n~p 104 (232)
..+++.|+|..||.|.++..+++ .++.|+|+|++|.+++.++++++.+++.+++..+++|+.++.. ..+|.|++|+|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 46899999999999999999998 7789999999999999999999999998889999999998864 48999999998
Q ss_pred cccc
Q 047897 105 YGIS 108 (232)
Q Consensus 105 ~~~~ 108 (232)
....
T Consensus 179 ~~~~ 182 (200)
T PF02475_consen 179 ESSL 182 (200)
T ss_dssp SSGG
T ss_pred HHHH
Confidence 5443
No 135
>PRK06922 hypothetical protein; Provisional
Probab=99.11 E-value=3.5e-10 Score=100.63 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=65.5
Q ss_pred cCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--C--CCccee
Q 047897 26 SSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--F--PQFDLV 99 (232)
Q Consensus 26 ~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~--~~~D~V 99 (232)
++..++.+|||+|||+|.++..+++ ++.+|+|+|+++.|++.|+++....+ .++.++++|+.+++ + .+||+|
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvV 491 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTI 491 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEE
Confidence 3445688999999999999988886 46899999999999999999876554 46889999998765 2 379999
Q ss_pred ecccCcc
Q 047897 100 VANIPYG 106 (232)
Q Consensus 100 i~n~p~~ 106 (232)
+++.+++
T Consensus 492 Vsn~vLH 498 (677)
T PRK06922 492 VYSSILH 498 (677)
T ss_pred EEchHHH
Confidence 9987655
No 136
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.10 E-value=6.1e-10 Score=95.19 Aligned_cols=81 Identities=28% Similarity=0.350 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF 96 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 96 (232)
.++.+++.+++.++.+|||||||+|.++..+++ .+.+|+|+|+|+++++.++++... . ++++..+|+.+.+ ++|
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l--~v~~~~~D~~~l~-~~f 229 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--L--PVEIRLQDYRDLN-GQF 229 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--C--eEEEEECchhhcC-CCC
Confidence 455677788888999999999999999999987 578999999999999999998853 2 4888999987763 589
Q ss_pred ceeeccc
Q 047897 97 DLVVANI 103 (232)
Q Consensus 97 D~Vi~n~ 103 (232)
|.|+++.
T Consensus 230 D~Ivs~~ 236 (383)
T PRK11705 230 DRIVSVG 236 (383)
T ss_pred CEEEEeC
Confidence 9999864
No 137
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.10 E-value=5e-10 Score=89.03 Aligned_cols=71 Identities=28% Similarity=0.483 Sum_probs=61.9
Q ss_pred CEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeecc
Q 047897 32 DTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN 102 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n 102 (232)
++|||||||+|..+..+++. +.+|+|+|+|+++++.+++++...|+.++++++.+|+.+.+.+ +||+|+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehH
Confidence 36999999999999999873 5799999999999999999998888877899999999766543 79999974
No 138
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.10 E-value=4.1e-10 Score=99.25 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC--CCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK--TEF 93 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~--~~~ 93 (232)
......+++.+...++.+|||||||+|.++..+++...+|+|+|+++.+++.+++.... .++++++++|+.+ .++
T Consensus 23 ~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 23 KEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLNI 99 (475)
T ss_pred chhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccCC
Confidence 34456777777766778999999999999999999888999999999999987664322 2579999999964 333
Q ss_pred --CCcceeecccCcccc
Q 047897 94 --PQFDLVVANIPYGIS 108 (232)
Q Consensus 94 --~~~D~Vi~n~p~~~~ 108 (232)
.+||+|+++.+++..
T Consensus 100 ~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CCCCEEEEehhhhHHhC
Confidence 379999998876543
No 139
>PRK08317 hypothetical protein; Provisional
Probab=99.09 E-value=1.1e-09 Score=87.51 Aligned_cols=88 Identities=27% Similarity=0.385 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 92 (232)
....+.+++.+.+.++.+|||+|||+|.++..+++. ..+++|+|+++.+++.++++....+ .++.++.+|+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG--PNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC--CceEEEecccccCC
Confidence 345667778888888999999999999999999873 4799999999999999999843322 57999999998765
Q ss_pred C--CCcceeecccCc
Q 047897 93 F--PQFDLVVANIPY 105 (232)
Q Consensus 93 ~--~~~D~Vi~n~p~ 105 (232)
. +.||.|+++..+
T Consensus 83 ~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 83 FPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCCceEEEEechh
Confidence 4 379999986543
No 140
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.09 E-value=5.5e-10 Score=93.43 Aligned_cols=87 Identities=20% Similarity=0.296 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897 16 QRVLDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92 (232)
Q Consensus 16 ~~~~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 92 (232)
+.+.+.+++.+.+ .++.+|||+|||+|.++..+++ .+.+|+++|.++++++.++++... .+++++.+|+.+.+
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp 173 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLP 173 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCC
Confidence 4455556666654 3578999999999999998887 357999999999999999998642 46889999999877
Q ss_pred CC--CcceeecccCcc
Q 047897 93 FP--QFDLVVANIPYG 106 (232)
Q Consensus 93 ~~--~~D~Vi~n~p~~ 106 (232)
++ .||+|+++..++
T Consensus 174 ~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 174 FPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCCceeEEEEcChhh
Confidence 54 799999875543
No 141
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.08 E-value=2.8e-10 Score=89.85 Aligned_cols=71 Identities=27% Similarity=0.358 Sum_probs=58.1
Q ss_pred CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC-c----cEEEEEcCCCCCCCCCcceeecc
Q 047897 31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH-D----RLNVISKDALKTEFPQFDLVVAN 102 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~----~~~~~~~D~~~~~~~~~D~Vi~n 102 (232)
|.+|||+|||.|.++..|++.++.|+|+|.++.+++.|++........ . ++++.+.|+++... .||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~-~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG-KFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccc-ccceeeeH
Confidence 477999999999999999999999999999999999999995443221 2 46677777766643 59999984
No 142
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.07 E-value=1.4e-09 Score=85.71 Aligned_cols=85 Identities=15% Similarity=0.044 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc-----------CCCccEEEEEc
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS-----------GFHDRLNVISK 86 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~ 86 (232)
.+...+..+...++.+|||+|||.|..+..|++.+..|+|+|+|+.+++.+....... .-..+++++++
T Consensus 22 ~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 22 LLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred HHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence 3434444444346779999999999999999999999999999999999864422110 00146899999
Q ss_pred CCCCCCC---CCcceeecc
Q 047897 87 DALKTEF---PQFDLVVAN 102 (232)
Q Consensus 87 D~~~~~~---~~~D~Vi~n 102 (232)
|+.+++. +.||.|+-.
T Consensus 102 D~~~~~~~~~~~fD~i~D~ 120 (213)
T TIGR03840 102 DFFALTAADLGPVDAVYDR 120 (213)
T ss_pred cCCCCCcccCCCcCEEEec
Confidence 9998863 368877753
No 143
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.07 E-value=1.4e-09 Score=89.05 Aligned_cols=68 Identities=16% Similarity=0.348 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCCccHhHHHHHhc-----CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeec
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEV-----SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVA 101 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~ 101 (232)
..+.+|||+|||+|.++..+++. +..++|+|+|+.+++.|+++. +++.+..+|+.+++++ +||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 35578999999999999998863 247999999999999998764 4688999999987764 7999997
Q ss_pred c
Q 047897 102 N 102 (232)
Q Consensus 102 n 102 (232)
.
T Consensus 158 ~ 158 (272)
T PRK11088 158 I 158 (272)
T ss_pred e
Confidence 5
No 144
>PRK04457 spermidine synthase; Provisional
Probab=99.05 E-value=2.2e-09 Score=87.22 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CCCcceeeccc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FPQFDLVVANI 103 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~~~D~Vi~n~ 103 (232)
.++.+|||||||.|.++..+++ +..+++++|+|+++++.|++++...+..++++++.+|+.++- .++||+|++|.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567899999999999999887 467999999999999999999875544468999999996641 24799999874
No 145
>PLN02476 O-methyltransferase
Probab=99.05 E-value=1.8e-09 Score=87.71 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89 (232)
Q Consensus 13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~ 89 (232)
...+...+.+.-.+...+..+|||||+|+|+.|..++. ...+|+++|.+++..+.|+++++..|+.++++++.||+.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 44566666666566666788999999999999999987 356899999999999999999999999889999999997
Q ss_pred CCC--------CCCcceeecccC
Q 047897 90 KTE--------FPQFDLVVANIP 104 (232)
Q Consensus 90 ~~~--------~~~~D~Vi~n~p 104 (232)
+.- .++||+|+.+.+
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECCC
Confidence 641 247999998764
No 146
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.7e-09 Score=91.53 Aligned_cols=121 Identities=23% Similarity=0.202 Sum_probs=89.0
Q ss_pred cCCCcccccCCHHHH----HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCcc
Q 047897 5 HKSKGQHILTNQRVL----DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDR 80 (232)
Q Consensus 5 ~k~~gq~fl~~~~~~----~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 80 (232)
+-+-|--|-+|-..+ ..+-+++++..+..++|+.||+|.++.++++...+|+|||++++.++-|++|+..+|+ .|
T Consensus 354 ~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi-sN 432 (534)
T KOG2187|consen 354 RISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI-SN 432 (534)
T ss_pred EECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc-cc
Confidence 334444455554433 3444677888889999999999999999999999999999999999999999999998 69
Q ss_pred EEEEEcCCCCCCC-------CCcc-eeecccCcccchHHHHHHhcCCCCccceE
Q 047897 81 LNVISKDALKTEF-------PQFD-LVVANIPYGISSPLVAKLVYGTKSFRSAT 126 (232)
Q Consensus 81 ~~~~~~D~~~~~~-------~~~D-~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~ 126 (232)
++|+.|-+++.-. +.-+ ++|.|+|-......+.+.+.........+
T Consensus 433 a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlv 486 (534)
T KOG2187|consen 433 ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLV 486 (534)
T ss_pred eeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceE
Confidence 9999997766421 1234 78889997665555544443333333333
No 147
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.3e-09 Score=81.53 Aligned_cols=79 Identities=25% Similarity=0.299 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCCCcceeecccCc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFPQFDLVVANIPY 105 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~~~D~Vi~n~p~ 105 (232)
....++|||||+|..+..+++ ....+.+.|+++.+++...+.++.++. +++.++.|..+- ..++.|+++.|+||
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCc
Confidence 367899999999999999988 456788999999999999999999874 589999998774 33689999999999
Q ss_pred ccchH
Q 047897 106 GISSP 110 (232)
Q Consensus 106 ~~~~~ 110 (232)
-.+++
T Consensus 121 Vpt~~ 125 (209)
T KOG3191|consen 121 VPTSD 125 (209)
T ss_pred CcCCc
Confidence 87753
No 148
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.03 E-value=4.2e-09 Score=91.83 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=92.8
Q ss_pred HHHHHHhc--CCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897 19 LDSIVRKS--SINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF 93 (232)
Q Consensus 19 ~~~i~~~~--~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (232)
....+..+ ++.++++|||+|+|+|.-|..+++ ....|+++|+++..++.+++++...|+ .++.+.+.|+..+..
T Consensus 100 S~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~ 178 (470)
T PRK11933 100 SMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGA 178 (470)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhh
Confidence 33334455 778999999999999999999988 246899999999999999999999998 579999999886532
Q ss_pred ---CCcceeecccCcccc-----hHHHHHHhcCCCCccceEehhHHHHH---HHHhcCCCCCcccchhh
Q 047897 94 ---PQFDLVVANIPYGIS-----SPLVAKLVYGTKSFRSATLLLQKEFA---RRLLASPGDSEFNRLAV 151 (232)
Q Consensus 94 ---~~~D~Vi~n~p~~~~-----~~~l~~~~~~~~~~~~~~~~~q~e~~---~rl~~~~g~~~~~~~~~ 151 (232)
..||.|+.+.|.... .+.+.+.... . ........|+++. -+++.++|...|+++++
T Consensus 179 ~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~-~-~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 179 ALPETFDAILLDAPCSGEGTVRKDPDALKNWSP-E-SNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hchhhcCeEEEcCCCCCCcccccCHHHhhhCCH-H-HHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 369999999998744 1211111000 0 0011224566663 35666777788888874
No 149
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.03 E-value=1.2e-09 Score=89.53 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
+-|-+++++++.+.+.+++.++|.+||.|+.|..+++. ..+|+|+|.|+.+++.+++++.. . ++++++++|+.+
T Consensus 3 H~pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~--~ri~~i~~~f~~ 79 (296)
T PRK00050 3 HIPVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F--GRFTLVHGNFSN 79 (296)
T ss_pred CccccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C--CcEEEEeCCHHH
Confidence 45788999999999889999999999999999999984 47999999999999999998865 2 689999999987
Q ss_pred CCC------CCcceeecccC
Q 047897 91 TEF------PQFDLVVANIP 104 (232)
Q Consensus 91 ~~~------~~~D~Vi~n~p 104 (232)
+.. .++|.|+.|+-
T Consensus 80 l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred HHHHHHcCCCccCEEEECCC
Confidence 521 26899998863
No 150
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.02 E-value=2.7e-09 Score=84.34 Aligned_cols=82 Identities=17% Similarity=0.082 Sum_probs=61.2
Q ss_pred HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc-----------CCCccEEEEEcCC
Q 047897 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS-----------GFHDRLNVISKDA 88 (232)
Q Consensus 20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~D~ 88 (232)
...+..+.+.++.+|||+|||.|..+..|++.+.+|+|+|+++.+++.+....... -...++++.++|+
T Consensus 27 ~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 27 QKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred HHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc
Confidence 33444444456789999999999999999999999999999999999864321110 0125789999999
Q ss_pred CCCCC---CCcceeec
Q 047897 89 LKTEF---PQFDLVVA 101 (232)
Q Consensus 89 ~~~~~---~~~D~Vi~ 101 (232)
.+++. +.||.|+-
T Consensus 107 ~~l~~~~~~~fd~v~D 122 (218)
T PRK13255 107 FALTAADLADVDAVYD 122 (218)
T ss_pred cCCCcccCCCeeEEEe
Confidence 98843 36787774
No 151
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.01 E-value=5.6e-10 Score=87.20 Aligned_cols=75 Identities=40% Similarity=0.504 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC--------CCCCcc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT--------EFPQFD 97 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--------~~~~~D 97 (232)
....+|||||||+|+-|..+++ ...+|+.+|++++..+.|++++...|+.++++++.+|+.+. +.++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3566999999999999999998 36899999999999999999999999888999999999863 123799
Q ss_pred eeeccc
Q 047897 98 LVVANI 103 (232)
Q Consensus 98 ~Vi~n~ 103 (232)
+|+.+-
T Consensus 124 ~VFiDa 129 (205)
T PF01596_consen 124 FVFIDA 129 (205)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 999874
No 152
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.00 E-value=2.5e-09 Score=84.68 Aligned_cols=85 Identities=22% Similarity=0.380 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-C--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-S--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 92 (232)
......+++.+...++.+|||+|||+|..+..+++. . .+++++|+++.+++.++++.. ...++.++.+|+.+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP 101 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC
Confidence 456666777776668889999999999999999883 2 489999999999999999876 2257999999998876
Q ss_pred CC--Ccceeeccc
Q 047897 93 FP--QFDLVVANI 103 (232)
Q Consensus 93 ~~--~~D~Vi~n~ 103 (232)
.+ .+|+|+++.
T Consensus 102 ~~~~~~D~i~~~~ 114 (223)
T TIGR01934 102 FEDNSFDAVTIAF 114 (223)
T ss_pred CCCCcEEEEEEee
Confidence 53 799998764
No 153
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.98 E-value=2.4e-09 Score=91.31 Aligned_cols=99 Identities=21% Similarity=0.293 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHhcCCC-CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 14 TNQRVLDSIVRKSSIN-PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~~-~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
.++.+...+++.+... ++.+|||++||+|.++..++.. ..+|+++|+++.+++.+++|++.+++ ++++++++|+..
T Consensus 40 ~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~ 118 (382)
T PRK04338 40 LNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANA 118 (382)
T ss_pred chhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHH
Confidence 3455555566655432 3468999999999999999873 34899999999999999999998887 468899999976
Q ss_pred CC--CCCcceeecccCcccchHHHHH
Q 047897 91 TE--FPQFDLVVANIPYGISSPLVAK 114 (232)
Q Consensus 91 ~~--~~~~D~Vi~n~p~~~~~~~l~~ 114 (232)
+. ...||+|+.|+| +...+.+..
T Consensus 119 ~l~~~~~fD~V~lDP~-Gs~~~~l~~ 143 (382)
T PRK04338 119 LLHEERKFDVVDIDPF-GSPAPFLDS 143 (382)
T ss_pred HHhhcCCCCEEEECCC-CCcHHHHHH
Confidence 43 247999999975 665566544
No 154
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.98 E-value=2.2e-09 Score=82.71 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHhcCCCC--CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 13 LTNQRVLDSIVRKSSINP--DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 13 l~~~~~~~~i~~~~~~~~--~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
.++.++.++-++.+++.+ ..-|||||||+|.-+..+.+.+...+|+|+|+.|++.|.+..-+ -.++.+|.-+
T Consensus 31 ~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~ 104 (270)
T KOG1541|consen 31 LIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGE 104 (270)
T ss_pred eehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCC
Confidence 455677888888887765 67899999999999999998899999999999999999974321 3467777643
Q ss_pred -CCCC--Ccceeec
Q 047897 91 -TEFP--QFDLVVA 101 (232)
Q Consensus 91 -~~~~--~~D~Vi~ 101 (232)
+|+. .||-+|+
T Consensus 105 GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 105 GLPFRPGTFDGVIS 118 (270)
T ss_pred CCCCCCCccceEEE
Confidence 4443 7996665
No 155
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.97 E-value=2.9e-09 Score=82.84 Aligned_cols=79 Identities=30% Similarity=0.348 Sum_probs=60.0
Q ss_pred HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC-C---CC
Q 047897 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-T---EF 93 (232)
Q Consensus 19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~-~---~~ 93 (232)
++.+.+.+. ++++|||+|||+|.++..+++ .+..++|+|+++++++.++++ +++++.+|+.+ . +.
T Consensus 4 ~~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~ 73 (194)
T TIGR02081 4 LESILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPD 73 (194)
T ss_pred HHHHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCC
Confidence 345555553 677999999999999998876 456889999999999887642 36788888865 2 22
Q ss_pred CCcceeecccCccc
Q 047897 94 PQFDLVVANIPYGI 107 (232)
Q Consensus 94 ~~~D~Vi~n~p~~~ 107 (232)
.+||+|+++.+++.
T Consensus 74 ~sfD~Vi~~~~l~~ 87 (194)
T TIGR02081 74 KSFDYVILSQTLQA 87 (194)
T ss_pred CCcCEEEEhhHhHc
Confidence 37999999866543
No 156
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.97 E-value=3.4e-09 Score=83.35 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----------CC
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----------FP 94 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----------~~ 94 (232)
+.++.+|||+|||+|.++..+++. ...|+|+|+++ + ... ++++++++|+.+.+ ..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 467889999999999999999883 36899999988 1 112 46899999999842 34
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
.+|+|++|+
T Consensus 117 ~~D~V~S~~ 125 (209)
T PRK11188 117 KVQVVMSDM 125 (209)
T ss_pred CCCEEecCC
Confidence 799999987
No 157
>PTZ00146 fibrillarin; Provisional
Probab=98.97 E-value=4.4e-09 Score=85.67 Aligned_cols=85 Identities=22% Similarity=0.339 Sum_probs=64.4
Q ss_pred HHHHHHH---HhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 17 RVLDSIV---RKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 17 ~~~~~i~---~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
++.+.|+ +.+.+.++++|||+|||+|.++..+++. ...|+|+|+++.+.+.+.+.+... .|+.++.+|+..
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~ 192 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARY 192 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccC
Confidence 4565664 3456789999999999999999999994 468999999998665555444322 478999999864
Q ss_pred C-----CCCCcceeecccC
Q 047897 91 T-----EFPQFDLVVANIP 104 (232)
Q Consensus 91 ~-----~~~~~D~Vi~n~p 104 (232)
. ..+.+|+|+++..
T Consensus 193 p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred hhhhhcccCCCCEEEEeCC
Confidence 3 2347999999874
No 158
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.97 E-value=7.5e-10 Score=83.14 Aligned_cols=72 Identities=25% Similarity=0.406 Sum_probs=66.5
Q ss_pred CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeeccc
Q 047897 31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANI 103 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~ 103 (232)
.+.+.|+|+|+|.++...++...+|+++|.||.....|.+|+.-.|. .|++++.+|+.+++++..|+|+|-+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~fe~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDFENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccccccceeHHHH
Confidence 47899999999999999999999999999999999999999887777 6899999999999999899999854
No 159
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.97 E-value=1.1e-10 Score=80.81 Aligned_cols=70 Identities=34% Similarity=0.465 Sum_probs=46.2
Q ss_pred EEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC---CCCCCC-CCcceeecccCc
Q 047897 35 LEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD---ALKTEF-PQFDLVVANIPY 105 (232)
Q Consensus 35 LDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D---~~~~~~-~~~D~Vi~n~p~ 105 (232)
||||||+|.++..+++. ..+++|+|+|+.+++.+++++...+. .+......+ ..+... .+||+|+++-..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999999999985 78999999999999999999987654 233444444 333333 389999986443
No 160
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.96 E-value=5.5e-10 Score=85.83 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=85.2
Q ss_pred cccccCCHHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897 9 GQHILTNQRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87 (232)
Q Consensus 9 gq~fl~~~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D 87 (232)
|+...+.+.+...+..... ......|+|..||-|+.+...+..+..|+++|+||.-+.-|+.|++.+|++++++|++||
T Consensus 72 ~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD 151 (263)
T KOG2730|consen 72 GWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD 151 (263)
T ss_pred ceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence 5556676777776665432 124568999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC------CCcceeecccCcccchHHHHHH
Q 047897 88 ALKTEF------PQFDLVVANIPYGISSPLVAKL 115 (232)
Q Consensus 88 ~~~~~~------~~~D~Vi~n~p~~~~~~~l~~~ 115 (232)
++++-. ..+|+|+..+|++..+-....+
T Consensus 152 ~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~~ 185 (263)
T KOG2730|consen 152 FLDLASKLKADKIKYDCVFLSPPWGGPSYLRADV 185 (263)
T ss_pred HHHHHHHHhhhhheeeeeecCCCCCCcchhhhhh
Confidence 988632 1467899889887765444333
No 161
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=7.7e-09 Score=82.09 Aligned_cols=101 Identities=24% Similarity=0.358 Sum_probs=86.3
Q ss_pred HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP- 94 (232)
Q Consensus 19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~- 94 (232)
+..|+..+++.+|.+|+|-|+|+|.++.++++ +-.+++.+|++....+.|++.++..|+++++++.+-|+....+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 45677888999999999999999999999998 34899999999999999999999999999999999999876543
Q ss_pred ---CcceeecccCcccc-hHHHHHHhcCC
Q 047897 95 ---QFDLVVANIPYGIS-SPLVAKLVYGT 119 (232)
Q Consensus 95 ---~~D~Vi~n~p~~~~-~~~l~~~~~~~ 119 (232)
.+|.|+.++|-.|. -|.+.+++...
T Consensus 174 ks~~aDaVFLDlPaPw~AiPha~~~lk~~ 202 (314)
T KOG2915|consen 174 KSLKADAVFLDLPAPWEAIPHAAKILKDE 202 (314)
T ss_pred cccccceEEEcCCChhhhhhhhHHHhhhc
Confidence 68999999998776 34555555443
No 162
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.95 E-value=4.8e-09 Score=83.29 Aligned_cols=89 Identities=21% Similarity=0.202 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHhcCC----CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897 14 TNQRVLDSIVRKSSI----NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~----~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~ 89 (232)
.++..++.+.+.+.. ..+.+|||+|||+|.++..+++.+.+++++|.++.+++.+++++...+. .++.+..+|+.
T Consensus 25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~ 103 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVE 103 (224)
T ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHH
Confidence 355556666665542 3477999999999999999988778899999999999999999887654 26889999987
Q ss_pred CCCC---CCcceeeccc
Q 047897 90 KTEF---PQFDLVVANI 103 (232)
Q Consensus 90 ~~~~---~~~D~Vi~n~ 103 (232)
+.+. ..||+|+++-
T Consensus 104 ~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 104 DLAEKGAKSFDVVTCME 120 (224)
T ss_pred HhhcCCCCCccEEEehh
Confidence 7643 3799998753
No 163
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.93 E-value=8.1e-09 Score=82.56 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--- 92 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--- 92 (232)
+.-++.+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+. +++++.+|+.+.+
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc
Confidence 34455566666556788999999999999999988888999999999999999999876654 4788888887764
Q ss_pred CCCcceeeccc
Q 047897 93 FPQFDLVVANI 103 (232)
Q Consensus 93 ~~~~D~Vi~n~ 103 (232)
...||+|+++.
T Consensus 112 ~~~fD~Ii~~~ 122 (233)
T PRK05134 112 PGQFDVVTCME 122 (233)
T ss_pred CCCccEEEEhh
Confidence 24799998753
No 164
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.92 E-value=3.5e-09 Score=89.84 Aligned_cols=91 Identities=21% Similarity=0.290 Sum_probs=74.5
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDAL 89 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~ 89 (232)
|+-.+...+.+.+.+ .|++||++-|=||.++..++..++ +|++||+|...++.|++|++.+|++ .+..++++|+.
T Consensus 202 FlDqR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 202 FLDQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred eHHhHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 444344444444444 389999999999999999999776 9999999999999999999999985 56899999998
Q ss_pred CCC------CCCcceeecccCc
Q 047897 90 KTE------FPQFDLVVANIPY 105 (232)
Q Consensus 90 ~~~------~~~~D~Vi~n~p~ 105 (232)
++- -.+||+||.+||-
T Consensus 279 ~~l~~~~~~g~~fDlIilDPPs 300 (393)
T COG1092 279 KWLRKAERRGEKFDLIILDPPS 300 (393)
T ss_pred HHHHHHHhcCCcccEEEECCcc
Confidence 862 1389999999993
No 165
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.92 E-value=6.8e-09 Score=81.27 Aligned_cols=88 Identities=26% Similarity=0.336 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--c-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEE-cCCCCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--V-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS-KDALKT 91 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~D~~~~ 91 (232)
+...+.+.-.+...+..+|||||++.|+-+..++. + ..+++++|+++++++.|++++...|+.++++++. +|+++.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 55555565666667788999999999999999998 3 5799999999999999999999999988899999 588764
Q ss_pred ----CCCCcceeeccc
Q 047897 92 ----EFPQFDLVVANI 103 (232)
Q Consensus 92 ----~~~~~D~Vi~n~ 103 (232)
..++||+|+.+-
T Consensus 125 l~~~~~~~fDliFIDa 140 (219)
T COG4122 125 LSRLLDGSFDLVFIDA 140 (219)
T ss_pred HHhccCCCccEEEEeC
Confidence 235899999863
No 166
>PRK00811 spermidine synthase; Provisional
Probab=98.92 E-value=4.5e-09 Score=86.46 Aligned_cols=76 Identities=26% Similarity=0.425 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC--C--CccEEEEEcCCCCCC---CCCccee
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG--F--HDRLNVISKDALKTE---FPQFDLV 99 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~~~~~~~D~~~~~---~~~~D~V 99 (232)
....+||+||||.|.++..+++. ..+|+++|+|+.+++.|++.+...+ . +++++++.+|+.++- ..+||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35678999999999999999884 4689999999999999999986432 1 368999999997642 3479999
Q ss_pred ecccC
Q 047897 100 VANIP 104 (232)
Q Consensus 100 i~n~p 104 (232)
+++.+
T Consensus 155 i~D~~ 159 (283)
T PRK00811 155 IVDST 159 (283)
T ss_pred EECCC
Confidence 99863
No 167
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.91 E-value=2.8e-09 Score=87.66 Aligned_cols=74 Identities=28% Similarity=0.498 Sum_probs=63.6
Q ss_pred CCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeecc
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVAN 102 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n 102 (232)
+-.+.+|||+|||+|.++...++. ..+|+|||-+. +++.|++.+..++++..++++.|.+++..+ +..|+|++-
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeeh
Confidence 446889999999999999999984 57999999766 559999999999998789999999988644 488999973
No 168
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.88 E-value=3.8e-08 Score=86.71 Aligned_cols=179 Identities=17% Similarity=0.293 Sum_probs=119.0
Q ss_pred cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---c---CCeEEEEEcCHHHHHHHHHHHhhcCCC
Q 047897 5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---V---SKKVHAIEIDERMVEILNRRAADSGFH 78 (232)
Q Consensus 5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~---~~~v~~vD~~~~~~~~a~~~~~~~~~~ 78 (232)
.|..|| |++++.+++-|++.+.+.+..+|+|..||+|++.....+ . ...++|.|+++.....|+.++-.+|.+
T Consensus 162 ~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 162 GKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 355677 778899999999999987888999999999997777666 1 256899999999999999999998875
Q ss_pred ccEEEEEcCCCCCCC-------CCcceeecccCcccc---hHHHH-----HHhc-CCCCccceE-ehhHHHHHHHHhcCC
Q 047897 79 DRLNVISKDALKTEF-------PQFDLVVANIPYGIS---SPLVA-----KLVY-GTKSFRSAT-LLLQKEFARRLLASP 141 (232)
Q Consensus 79 ~~~~~~~~D~~~~~~-------~~~D~Vi~n~p~~~~---~~~l~-----~~~~-~~~~~~~~~-~~~q~e~~~rl~~~~ 141 (232)
.++...++|.+.-|. ..||.|++||||+.. ...+. +... ......... +.+...+...+ .|
T Consensus 241 ~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l--~~ 318 (489)
T COG0286 241 GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKL--KP 318 (489)
T ss_pred ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhc--CC
Confidence 456788888776542 258999999999832 21110 0001 111111122 44445555554 22
Q ss_pred CC---------Cccc-c-hhh----eeeeeeeeEEEEEecCCCcccCCCccEEEEEEEeCCC
Q 047897 142 GD---------SEFN-R-LAV----NVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAE 188 (232)
Q Consensus 142 g~---------~~~~-~-~~~----~~~~~~~~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~ 188 (232)
|+ ..+. . ... +++ -..+..+...|...|.+. .+.+.++.+.+.+.
T Consensus 319 ~g~aaivl~~gvlfr~~~e~~IR~~l~~-~~~~~~ii~lp~~lF~~t-~i~~~Il~l~k~k~ 378 (489)
T COG0286 319 GGRAAIVLPDGVLFRGGAEKDIRKDLLE-DNLLEAIIGLPTGLFYNT-GIPTNILFLTKNKP 378 (489)
T ss_pred CceEEEEecCCcCcCCCchHHHHHHHHh-ccceEEeeeCChhhcccC-CCCeEEEEeecCCC
Confidence 21 1111 0 000 112 223566778999999999 88888888776543
No 169
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.88 E-value=1.5e-08 Score=82.71 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=69.1
Q ss_pred HHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccce
Q 047897 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDL 98 (232)
Q Consensus 21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~ 98 (232)
.+++....-.+..|||+|||+|.++...+. ..++|+++|- .+|.+.|++..+.+.+.+++.++.|-+++..++ +.|+
T Consensus 168 Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~Dv 246 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDV 246 (517)
T ss_pred HHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccE
Confidence 444443334678999999999999999888 4589999996 569999999999888889999999999999887 7899
Q ss_pred eeccc
Q 047897 99 VVANI 103 (232)
Q Consensus 99 Vi~n~ 103 (232)
+|+-+
T Consensus 247 iISEP 251 (517)
T KOG1500|consen 247 IISEP 251 (517)
T ss_pred EEecc
Confidence 99864
No 170
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.87 E-value=1.1e-08 Score=69.99 Aligned_cols=74 Identities=28% Similarity=0.435 Sum_probs=61.3
Q ss_pred EEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCccc
Q 047897 33 TVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPYGI 107 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~~~ 107 (232)
+++|+|||.|.++..++. ...+++++|+++..+..+++.....+. .++.++.+|+.+... +++|+|+++.+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999999998 678999999999999999864443332 579999999988753 47999999988665
No 171
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.85 E-value=6.6e-08 Score=78.62 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=60.3
Q ss_pred HHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-CCCccee
Q 047897 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-FPQFDLV 99 (232)
Q Consensus 22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~~D~V 99 (232)
+...+..-.|.+|||||||.|+.+..++..+ ..|+|+|.++......+-.-.-.|....+.....-+++++ ...||.|
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtV 186 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTV 186 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEE
Confidence 4444434478899999999999999999855 5799999998876654333333332223434433444544 3489999
Q ss_pred ec-ccCcccchHH
Q 047897 100 VA-NIPYGISSPL 111 (232)
Q Consensus 100 i~-n~p~~~~~~~ 111 (232)
++ .+-||..+|+
T Consensus 187 F~MGVLYHrr~Pl 199 (315)
T PF08003_consen 187 FSMGVLYHRRSPL 199 (315)
T ss_pred EEeeehhccCCHH
Confidence 97 5677777665
No 172
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.84 E-value=1.8e-09 Score=83.86 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=68.2
Q ss_pred HhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCC-CccEEEEEcCCCC----CCCCCcc
Q 047897 24 RKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGF-HDRLNVISKDALK----TEFPQFD 97 (232)
Q Consensus 24 ~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~D~~~----~~~~~~D 97 (232)
+...++.|.+|||.+.|.|+.+...+++++ +|+.+|.|+..++.|.-|.=..++ +.+++++.||+.+ ++.++||
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 455667899999999999999999999887 999999999999998877644443 2468999999876 4556899
Q ss_pred eeecccC
Q 047897 98 LVVANIP 104 (232)
Q Consensus 98 ~Vi~n~p 104 (232)
+|+.++|
T Consensus 208 aIiHDPP 214 (287)
T COG2521 208 AIIHDPP 214 (287)
T ss_pred eEeeCCC
Confidence 9999999
No 173
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.83 E-value=2.9e-08 Score=86.31 Aligned_cols=72 Identities=33% Similarity=0.606 Sum_probs=59.0
Q ss_pred CCEEEEEcCCccHhHHHHHhc------CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeecc
Q 047897 31 DDTVLEIGPGTGNLTLKLLEV------SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN 102 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n 102 (232)
+..|+|+|||+|.++...++. ..+|+|||.++.++..++++....+++++++++++|+.++..+ +.|+||+-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEe
Confidence 568999999999998877663 3699999999999988888877778878999999999999876 89999984
No 174
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.83 E-value=2.4e-08 Score=82.94 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=55.4
Q ss_pred HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
.+.|++.+ .++.+|||+|||+|..|..+++. +.+|+|+|+|++|++.+++++......-++.++++|+.+.
T Consensus 54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 33444444 35678999999999999999984 5899999999999999999986533113577899999763
No 175
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.82 E-value=2.6e-08 Score=81.09 Aligned_cols=92 Identities=18% Similarity=0.296 Sum_probs=63.5
Q ss_pred cccCCHHHHHHHHHh--------cCCCCCCEEEEEcCCccH----hHHHHHhc-------CCeEEEEEcCHHHHHHHHHH
Q 047897 11 HILTNQRVLDSIVRK--------SSINPDDTVLEIGPGTGN----LTLKLLEV-------SKKVHAIEIDERMVEILNRR 71 (232)
Q Consensus 11 ~fl~~~~~~~~i~~~--------~~~~~~~~vLDiG~G~G~----~t~~l~~~-------~~~v~~vD~~~~~~~~a~~~ 71 (232)
.|..++...+.+.+. ....++.+|+|+|||+|. ++..+++. ..+|+|+|+|+.+++.|++.
T Consensus 72 ~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 72 RFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred cccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 466666555554432 222345699999999996 45555441 36899999999999999986
Q ss_pred Hhh----cC----------------------CCccEEEEEcCCCCCCC--CCcceeecc
Q 047897 72 AAD----SG----------------------FHDRLNVISKDALKTEF--PQFDLVVAN 102 (232)
Q Consensus 72 ~~~----~~----------------------~~~~~~~~~~D~~~~~~--~~~D~Vi~n 102 (232)
... .+ +..++.|.++|+.+.+. ++||+|+|.
T Consensus 152 ~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~cr 210 (264)
T smart00138 152 IYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCR 210 (264)
T ss_pred CCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEec
Confidence 411 00 11368999999998764 489999984
No 176
>PLN02366 spermidine synthase
Probab=98.82 E-value=2.8e-08 Score=82.38 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhc--CC-CccEEEEEcCCCCC----CCCCccee
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADS--GF-HDRLNVISKDALKT----EFPQFDLV 99 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~----~~~~~D~V 99 (232)
....+||+||||.|.++..+++. ..+|+.+|+|+.+++.+++.+... ++ +++++++.+|+..+ +.+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 45679999999999999999984 468999999999999999998643 22 36899999998654 23479999
Q ss_pred ecccCc
Q 047897 100 VANIPY 105 (232)
Q Consensus 100 i~n~p~ 105 (232)
+++.+.
T Consensus 170 i~D~~d 175 (308)
T PLN02366 170 IVDSSD 175 (308)
T ss_pred EEcCCC
Confidence 998653
No 177
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.7e-08 Score=84.30 Aligned_cols=134 Identities=20% Similarity=0.202 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc----CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV----SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 92 (232)
.........+++.+|++|||.++++|+-|..+++. +..|+|+|+|+.-+..+++++.+.|+ .++.+++.|+...+
T Consensus 143 ~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~nv~~~~~d~~~~~ 221 (355)
T COG0144 143 EASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-RNVIVVNKDARRLA 221 (355)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-CceEEEeccccccc
Confidence 33444456788899999999999999999999882 35679999999999999999999998 46889999987553
Q ss_pred C----C-CcceeecccCcccchH-----HHHHHhcCCCCccceEehhHHHH---HHHHhcCCCCCcccchhhee
Q 047897 93 F----P-QFDLVVANIPYGISSP-----LVAKLVYGTKSFRSATLLLQKEF---ARRLLASPGDSEFNRLAVNV 153 (232)
Q Consensus 93 ~----~-~~D~Vi~n~p~~~~~~-----~l~~~~~~~~~~~~~~~~~q~e~---~~rl~~~~g~~~~~~~~~~~ 153 (232)
. . .||.|+.+.|...+.- .+.+..... -......+|.++ +-+++.++|...|+++|+..
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~--~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPE--DIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHH--HHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 2 2 4999999999876531 111111000 001122467766 44567778889999888743
No 178
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.80 E-value=1.6e-08 Score=81.17 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
..+...+.+...+...+..+|||||+++|+-|..++. ...+|+++|.+++..+.|++++...|+.++++++.||+.+
T Consensus 63 ~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 63 TSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 3455555444444444567999999999999999887 3579999999999999999999999988899999999987
Q ss_pred CC---------CCCcceeecc
Q 047897 91 TE---------FPQFDLVVAN 102 (232)
Q Consensus 91 ~~---------~~~~D~Vi~n 102 (232)
.- .++||+|+.+
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiD 163 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVD 163 (247)
T ss_pred HHHHHHhccccCCcccEEEec
Confidence 41 1479999976
No 179
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.80 E-value=2.6e-08 Score=74.62 Aligned_cols=78 Identities=24% Similarity=0.335 Sum_probs=53.4
Q ss_pred HHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897 18 VLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF 96 (232)
Q Consensus 18 ~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 96 (232)
+.+.+.+..+ ..++.+|||+|||.|.++..+.+.+.+++|+|+++.+++. . . .............+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~-~--~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R-N--VVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T-T--SEEEEEECHTHHCHSSSE
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h-h--hhhhhhhhhhhhccccch
Confidence 3344443443 4678899999999999999998888899999999999987 1 0 112222222222334589
Q ss_pred ceeecccC
Q 047897 97 DLVVANIP 104 (232)
Q Consensus 97 D~Vi~n~p 104 (232)
|+|+++-.
T Consensus 80 D~i~~~~~ 87 (161)
T PF13489_consen 80 DLIICNDV 87 (161)
T ss_dssp EEEEEESS
T ss_pred hhHhhHHH
Confidence 99998644
No 180
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.80 E-value=1.3e-08 Score=79.60 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=53.5
Q ss_pred EEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--CCCcceeecccC
Q 047897 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--FPQFDLVVANIP 104 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~D~Vi~n~p 104 (232)
.++|+|||+|..++.++....+|+|+|+++.|++.+++................+..++. .++.|+|++--.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 799999999988888888889999999999999999887754332222344444555544 348999997543
No 181
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.80 E-value=6.5e-08 Score=76.49 Aligned_cols=86 Identities=21% Similarity=0.185 Sum_probs=64.8
Q ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc-----------CCCccEEE
Q 047897 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS-----------GFHDRLNV 83 (232)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~~ 83 (232)
++.+.+.+.+ +.+.++.+||.+|||.|..+..|++.+.+|+|+|+|+..++.+.+..... .-..++++
T Consensus 29 np~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 107 (226)
T PRK13256 29 NEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEI 107 (226)
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEE
Confidence 4555566543 44456789999999999999999999999999999999999876532100 00147999
Q ss_pred EEcCCCCCCC-----CCcceeec
Q 047897 84 ISKDALKTEF-----PQFDLVVA 101 (232)
Q Consensus 84 ~~~D~~~~~~-----~~~D~Vi~ 101 (232)
+++|+++++. ..||.|+=
T Consensus 108 ~~gD~f~l~~~~~~~~~fD~VyD 130 (226)
T PRK13256 108 YVADIFNLPKIANNLPVFDIWYD 130 (226)
T ss_pred EEccCcCCCccccccCCcCeeee
Confidence 9999999863 36887663
No 182
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.79 E-value=3e-08 Score=76.71 Aligned_cols=67 Identities=24% Similarity=0.389 Sum_probs=52.3
Q ss_pred hcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---------
Q 047897 25 KSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------- 92 (232)
Q Consensus 25 ~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------- 92 (232)
...+.++++|||+|||+|.++..+++. ..+|+|+|+++.+ .. .+++++++|+.+.+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence 345578999999999999999988873 3579999999864 11 45889999987642
Q ss_pred -CCCcceeeccc
Q 047897 93 -FPQFDLVVANI 103 (232)
Q Consensus 93 -~~~~D~Vi~n~ 103 (232)
...+|+|+++.
T Consensus 95 ~~~~~D~V~~~~ 106 (188)
T TIGR00438 95 GDDKVDVVMSDA 106 (188)
T ss_pred CCCCccEEEcCC
Confidence 23699999875
No 183
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=3e-08 Score=82.51 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=71.0
Q ss_pred CCCCEEEEEcCCccHhHHHHHhcCCe-EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeecccCc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVANIPY 105 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n~p~ 105 (232)
.+|.+|+|.-+|-|.+|..++..+.. |+|+|++|.+++.+++|+..+++.+.+..++||+.+... ..+|.|+.|+|.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 46999999999999999999996655 999999999999999999999997779999999998754 379999999986
Q ss_pred ccc
Q 047897 106 GIS 108 (232)
Q Consensus 106 ~~~ 108 (232)
...
T Consensus 267 ~a~ 269 (341)
T COG2520 267 SAH 269 (341)
T ss_pred cch
Confidence 433
No 184
>PRK10742 putative methyltransferase; Provisional
Probab=98.78 E-value=2.9e-08 Score=78.85 Aligned_cols=89 Identities=20% Similarity=0.337 Sum_probs=74.9
Q ss_pred HHHHHhcCCCCCC--EEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc------C--CCccEEEEEcCCC
Q 047897 20 DSIVRKSSINPDD--TVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS------G--FHDRLNVISKDAL 89 (232)
Q Consensus 20 ~~i~~~~~~~~~~--~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~~~~~~~D~~ 89 (232)
+.+++.++++++. +|||.-+|+|..+..++..+++|+++|.++.+....++++... + ...+++++++|+.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 4556777778887 8999999999999999999999999999999999999999874 2 1257999999998
Q ss_pred CCC---CCCcceeecccCcccc
Q 047897 90 KTE---FPQFDLVVANIPYGIS 108 (232)
Q Consensus 90 ~~~---~~~~D~Vi~n~p~~~~ 108 (232)
++- ..+||+|+.+|||...
T Consensus 156 ~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 156 TALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHhhCCCCCcEEEECCCCCCC
Confidence 763 2379999999999764
No 185
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.77 E-value=2.7e-08 Score=81.28 Aligned_cols=91 Identities=29% Similarity=0.345 Sum_probs=66.6
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDAL 89 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~ 89 (232)
|+- ..-.+..+... ..+.+|||+-|=+|+++...+..+ .+|++||.|..+++.+++|+..++++ ++++++.+|+.
T Consensus 108 FlD-qR~nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 108 FLD-QRENRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp -GG-GHHHHHHHHHH--CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred cHH-HHhhHHHHHHH--cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 444 44444444443 257899999999999999988865 58999999999999999999999875 68999999998
Q ss_pred CCC-----CCCcceeecccCc
Q 047897 90 KTE-----FPQFDLVVANIPY 105 (232)
Q Consensus 90 ~~~-----~~~~D~Vi~n~p~ 105 (232)
++- ...||+||.+||-
T Consensus 185 ~~l~~~~~~~~fD~IIlDPPs 205 (286)
T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPS 205 (286)
T ss_dssp HHHHHHHHTT-EEEEEE--SS
T ss_pred HHHHHHhcCCCCCEEEECCCC
Confidence 742 2389999999993
No 186
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.77 E-value=5.9e-08 Score=79.40 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=49.3
Q ss_pred CCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEEcCC----CCC---CCCCcceee
Q 047897 31 DDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADS-GFHDRLNVISKDA----LKT---EFPQFDLVV 100 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~D~----~~~---~~~~~D~Vi 100 (232)
.-++||||+|...+=-.|.. .+++++|.|+|+..++.|+++...+ ++.++++++...- ++. +.+.||..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 34799999999865333322 6899999999999999999999998 8888999986632 221 113699999
Q ss_pred cccCcccchHHH
Q 047897 101 ANIPYGISSPLV 112 (232)
Q Consensus 101 ~n~p~~~~~~~l 112 (232)
|||||+.+.+..
T Consensus 183 CNPPFy~s~~e~ 194 (299)
T PF05971_consen 183 CNPPFYSSQEEA 194 (299)
T ss_dssp E-----SS----
T ss_pred cCCccccChhhh
Confidence 999999886654
No 187
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.77 E-value=7.5e-08 Score=76.37 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=39.2
Q ss_pred HHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHH
Q 047897 19 LDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEI 67 (232)
Q Consensus 19 ~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~ 67 (232)
+..+++..++ .++.+|||+|||+|.+|..+++. ..+|+|+|+++.++..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3445555554 36778999999999999999996 5789999999977764
No 188
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.76 E-value=4.6e-08 Score=76.02 Aligned_cols=76 Identities=25% Similarity=0.344 Sum_probs=60.2
Q ss_pred CEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-----CCCCcceeecccC
Q 047897 32 DTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-----EFPQFDLVVANIP 104 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~D~Vi~n~p 104 (232)
..+||||||.|.++..++. +...++|+|+....+..+.+++...++ .|+.++++|+... +..++|.|..|.|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3899999999999999988 678999999999999999999998888 6999999999873 2347899999887
Q ss_pred cccc
Q 047897 105 YGIS 108 (232)
Q Consensus 105 ~~~~ 108 (232)
-.|.
T Consensus 98 DPWp 101 (195)
T PF02390_consen 98 DPWP 101 (195)
T ss_dssp ----
T ss_pred CCCc
Confidence 5544
No 189
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.73 E-value=8.2e-08 Score=79.00 Aligned_cols=92 Identities=18% Similarity=0.326 Sum_probs=79.2
Q ss_pred cccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897 11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88 (232)
Q Consensus 11 ~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ 88 (232)
||.+-|-+++.+++.+.+.+++.++|.-+|.|+.|..+++. ..+|+|+|.|+.+++.+++++..++ +++.++++++
T Consensus 1 ~~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF 78 (305)
T TIGR00006 1 NFFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNF 78 (305)
T ss_pred CCCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCH
Confidence 56778999999999999999999999999999999999983 4899999999999999999987653 6899999998
Q ss_pred CCCC-------CCCcceeecccC
Q 047897 89 LKTE-------FPQFDLVVANIP 104 (232)
Q Consensus 89 ~~~~-------~~~~D~Vi~n~p 104 (232)
.++. ..++|.|+.|+-
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEecc
Confidence 7752 235888888763
No 190
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.73 E-value=8.3e-08 Score=75.97 Aligned_cols=77 Identities=25% Similarity=0.337 Sum_probs=66.7
Q ss_pred CEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCC-CcceeecccC
Q 047897 32 DTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFP-QFDLVVANIP 104 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~-~~D~Vi~n~p 104 (232)
..+||||||.|.++..+|. +...++|||+....+..|-+.+...++. |+.++++|+..+ ..+ +.|.|..|.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 4899999999999999998 5689999999999999999999999983 899999999874 223 7899999988
Q ss_pred cccch
Q 047897 105 YGISS 109 (232)
Q Consensus 105 ~~~~~ 109 (232)
-.|..
T Consensus 129 DPWpK 133 (227)
T COG0220 129 DPWPK 133 (227)
T ss_pred CCCCC
Confidence 76663
No 191
>PRK03612 spermidine synthase; Provisional
Probab=98.73 E-value=1.9e-08 Score=89.48 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCCccHhHHHHHhc-C-CeEEEEEcCHHHHHHHHHHH--hhc---CC-CccEEEEEcCCCCCC---CCCcc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEV-S-KKVHAIEIDERMVEILNRRA--ADS---GF-HDRLNVISKDALKTE---FPQFD 97 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~-~-~~v~~vD~~~~~~~~a~~~~--~~~---~~-~~~~~~~~~D~~~~~---~~~~D 97 (232)
.+..+|||||||+|..+..+++. . .+|+++|+|+++++.++++. ... .+ +++++++.+|+.++- .++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45678999999999999999884 3 79999999999999999943 211 11 268999999998742 24899
Q ss_pred eeecccCccc
Q 047897 98 LVVANIPYGI 107 (232)
Q Consensus 98 ~Vi~n~p~~~ 107 (232)
+|++|+|...
T Consensus 376 vIi~D~~~~~ 385 (521)
T PRK03612 376 VIIVDLPDPS 385 (521)
T ss_pred EEEEeCCCCC
Confidence 9999987643
No 192
>PRK01581 speE spermidine synthase; Validated
Probab=98.71 E-value=3.1e-08 Score=82.98 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHh-----hcCC-CccEEEEEcCCCCCC---CCCcc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAA-----DSGF-HDRLNVISKDALKTE---FPQFD 97 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~-----~~~~-~~~~~~~~~D~~~~~---~~~~D 97 (232)
....+||+||||.|..+..+++. ..+|++||+|+++++.|++... ...+ +++++++.+|+.++- .+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 34569999999999999999884 4799999999999999997321 1111 369999999998752 23799
Q ss_pred eeecccCcc
Q 047897 98 LVVANIPYG 106 (232)
Q Consensus 98 ~Vi~n~p~~ 106 (232)
+|++++|..
T Consensus 229 VIIvDl~DP 237 (374)
T PRK01581 229 VIIIDFPDP 237 (374)
T ss_pred EEEEcCCCc
Confidence 999998654
No 193
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.71 E-value=7e-08 Score=76.23 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=63.0
Q ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh-c------C----CCccEEE
Q 047897 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD-S------G----FHDRLNV 83 (232)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~------~----~~~~~~~ 83 (232)
+|.+.+. ++.+...++.+||..|||.|.....|++.+.+|+|+|+++.+++.+.+.... . + -.+++++
T Consensus 23 ~p~L~~~-~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 23 NPALVEY-LDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp THHHHHH-HHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred CHHHHHH-HHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 3444444 4446667788999999999999999999999999999999999998443321 0 0 0246899
Q ss_pred EEcCCCCCCCC---Ccceee
Q 047897 84 ISKDALKTEFP---QFDLVV 100 (232)
Q Consensus 84 ~~~D~~~~~~~---~~D~Vi 100 (232)
.++|+++++.. +||.|.
T Consensus 102 ~~gDfF~l~~~~~g~fD~iy 121 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIY 121 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEE
T ss_pred EEcccccCChhhcCCceEEE
Confidence 99999998654 588877
No 194
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=3e-08 Score=75.83 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEE-EEEcCCCCCC---CCCcceeeccc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLN-VISKDALKTE---FPQFDLVVANI 103 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~~~D~~~~~---~~~~D~Vi~n~ 103 (232)
....|||+|||+|..-...-. +..+|+++|.++.|-+++.+.+..... .++. |+.+|.++++ ..++|.|++.+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEE
Confidence 344689999999997766553 789999999999999999999987643 5677 9999999987 23899998864
No 195
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.68 E-value=9.2e-08 Score=78.24 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC--C-CccEEEEEcCCCCC---CCCCcceee
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG--F-HDRLNVISKDALKT---EFPQFDLVV 100 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~D~~~~---~~~~~D~Vi 100 (232)
..+.+||+||||+|.++..+++. ..+++++|+|+++++.+++.+...+ + .++++++.+|+.++ ...+||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34569999999999999998874 4789999999999999999875432 1 25789999998663 124899999
Q ss_pred cccCcc
Q 047897 101 ANIPYG 106 (232)
Q Consensus 101 ~n~p~~ 106 (232)
++.+..
T Consensus 151 ~D~~~~ 156 (270)
T TIGR00417 151 VDSTDP 156 (270)
T ss_pred EeCCCC
Confidence 987643
No 196
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.68 E-value=1.2e-07 Score=73.96 Aligned_cols=89 Identities=24% Similarity=0.413 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHh-------hcCC-CccEEE
Q 047897 14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAA-------DSGF-HDRLNV 83 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~~~~ 83 (232)
+.+..+..+++.+++.+++..+|+|||.|......+- ...+.+|||+.+...+.|+.... ..|. ..++++
T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 4578888999999999999999999999998776655 45669999999999887765443 2232 257899
Q ss_pred EEcCCCCCCC-----CCcceeecc
Q 047897 84 ISKDALKTEF-----PQFDLVVAN 102 (232)
Q Consensus 84 ~~~D~~~~~~-----~~~D~Vi~n 102 (232)
.++|+++.+. .+.|+|++|
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~N 129 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVN 129 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE-
T ss_pred eccCccccHhHhhhhcCCCEEEEe
Confidence 9999987653 356888886
No 197
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.64 E-value=2.1e-08 Score=77.78 Aligned_cols=80 Identities=23% Similarity=0.396 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT---- 91 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~---- 91 (232)
|..+++++..++..+-.++||+|||||..+..+-....+++|+|+|.+|++.|.++-.- =.+.++|+..+
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y------D~L~~Aea~~Fl~~~ 184 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY------DTLYVAEAVLFLEDL 184 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch------HHHHHHHHHHHhhhc
Confidence 78889999999887788999999999999999988899999999999999998876421 12344444332
Q ss_pred CCCCcceeec
Q 047897 92 EFPQFDLVVA 101 (232)
Q Consensus 92 ~~~~~D~Vi~ 101 (232)
..+.||+|++
T Consensus 185 ~~er~DLi~A 194 (287)
T COG4976 185 TQERFDLIVA 194 (287)
T ss_pred cCCcccchhh
Confidence 3347999886
No 198
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.58 E-value=5.7e-07 Score=66.28 Aligned_cols=84 Identities=27% Similarity=0.341 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcC--CCccEEEEEcCCCCCC-CCCccee
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSG--FHDRLNVISKDALKTE-FPQFDLV 99 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~-~~~~D~V 99 (232)
.+...|+|+|||.|+++..++. ...+|+|+|.++..++.+.++....+ ...++.+..++..+.. ....+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 5677999999999999999988 47899999999999999999998776 4356777777766553 2355677
Q ss_pred ecccCcccchHHH
Q 047897 100 VANIPYGISSPLV 112 (232)
Q Consensus 100 i~n~p~~~~~~~l 112 (232)
++--..+.-++.+
T Consensus 104 vgLHaCG~Ls~~~ 116 (141)
T PF13679_consen 104 VGLHACGDLSDRA 116 (141)
T ss_pred EEeecccchHHHH
Confidence 7643443334433
No 199
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.54 E-value=6.7e-07 Score=73.08 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=90.7
Q ss_pred CEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC--C-CccEEEEEcCCCCCC--CC-Ccceeeccc
Q 047897 32 DTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG--F-HDRLNVISKDALKTE--FP-QFDLVVANI 103 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~D~~~~~--~~-~~D~Vi~n~ 103 (232)
.+||-||-|.|..++++++. ..+++.||+|+..++.+++.+.... . ++|++++.+|+.++- .+ .||+|+.+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 59999999999999999994 4899999999999999999997643 2 379999999998863 22 699999875
Q ss_pred CcccchHHHHHHhcCCCCccceEehhHH---HHHHHHhcCCCCCcccch------hheeeeeeeeEEEEEecCCCcccCC
Q 047897 104 PYGISSPLVAKLVYGTKSFRSATLLLQK---EFARRLLASPGDSEFNRL------AVNVKLVADVEFVMDVSKRDFLPCP 174 (232)
Q Consensus 104 p~~~~~~~l~~~~~~~~~~~~~~~~~q~---e~~~rl~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~f~P~p 174 (232)
.-.. -++.-++.. +.+++.+..+|-.....- ..........+.++..-.....+.|
T Consensus 158 tdp~---------------gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ip 222 (282)
T COG0421 158 TDPV---------------GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIP 222 (282)
T ss_pred CCCC---------------CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccc
Confidence 3111 111112222 234555555553222111 1112223345566666677778889
Q ss_pred CccEEEEE
Q 047897 175 KVDSSVVI 182 (232)
Q Consensus 175 ~v~s~~~~ 182 (232)
.+.++...
T Consensus 223 t~~~g~~~ 230 (282)
T COG0421 223 TYPSGFWG 230 (282)
T ss_pred eecCCceE
Confidence 98888443
No 200
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1e-06 Score=67.73 Aligned_cols=89 Identities=19% Similarity=0.322 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHhcC--CCCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcC--------C-C
Q 047897 14 TNQRVLDSIVRKSS--INPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSG--------F-H 78 (232)
Q Consensus 14 ~~~~~~~~i~~~~~--~~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~--------~-~ 78 (232)
.-|.+-..+++.+. +++|...||+|+|+|++|..++. .+..++|||.-+++++.+++++...- + .
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 34888889999888 88999999999999999999886 34556999999999999999986542 1 2
Q ss_pred ccEEEEEcCCCCCCCC--Ccceeecc
Q 047897 79 DRLNVISKDALKTEFP--QFDLVVAN 102 (232)
Q Consensus 79 ~~~~~~~~D~~~~~~~--~~D~Vi~n 102 (232)
+++.++.||......+ +||.|.+.
T Consensus 144 ~~l~ivvGDgr~g~~e~a~YDaIhvG 169 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYAEQAPYDAIHVG 169 (237)
T ss_pred CceEEEeCCccccCCccCCcceEEEc
Confidence 5788999999886543 89999875
No 201
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.53 E-value=5.2e-07 Score=68.84 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=51.1
Q ss_pred CCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC--CCccEEEEEcCCCCC------CCCCcc
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG--FHDRLNVISKDALKT------EFPQFD 97 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~------~~~~~D 97 (232)
...+.+|||+|||+|..+..++.. ..+|+..|.++ .++.++.|++.++ ...++.+...|..+. ...+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 456789999999999999999886 78999999999 9999999998876 346788888776442 123699
Q ss_pred eeec-ccCcc
Q 047897 98 LVVA-NIPYG 106 (232)
Q Consensus 98 ~Vi~-n~p~~ 106 (232)
+|++ ++-|.
T Consensus 122 ~IlasDv~Y~ 131 (173)
T PF10294_consen 122 VILASDVLYD 131 (173)
T ss_dssp EEEEES--S-
T ss_pred EEEEecccch
Confidence 8886 56554
No 202
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.52 E-value=5.2e-07 Score=76.78 Aligned_cols=83 Identities=16% Similarity=0.300 Sum_probs=69.5
Q ss_pred CEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCc
Q 047897 32 DTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPY 105 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~ 105 (232)
-+|||..||+|..+..++.. ..+|+++|+++.+++.+++|++.++. .+++++++|+..+.. ..||+|..|+ |
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 48999999999999999884 37899999999999999999998876 478999999987632 3699999998 7
Q ss_pred ccchHHHHHHh
Q 047897 106 GISSPLVAKLV 116 (232)
Q Consensus 106 ~~~~~~l~~~~ 116 (232)
+...+.+...+
T Consensus 124 Gs~~~fld~al 134 (374)
T TIGR00308 124 GTPAPFVDSAI 134 (374)
T ss_pred CCcHHHHHHHH
Confidence 76666665444
No 203
>PLN02823 spermine synthase
Probab=98.47 E-value=4.2e-07 Score=76.27 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC---CCccEEEEEcCCCCCC---CCCcceeec
Q 047897 30 PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG---FHDRLNVISKDALKTE---FPQFDLVVA 101 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~---~~~~D~Vi~ 101 (232)
...+||.||+|.|..+..+++. ..+|++||+|+.+++.|++.+...+ .+++++++.+|+..+- .++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4568999999999999998883 4789999999999999999986432 1378999999998752 247999999
Q ss_pred ccC
Q 047897 102 NIP 104 (232)
Q Consensus 102 n~p 104 (232)
+++
T Consensus 183 D~~ 185 (336)
T PLN02823 183 DLA 185 (336)
T ss_pred cCC
Confidence 864
No 204
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.43 E-value=2.6e-06 Score=68.45 Aligned_cols=85 Identities=16% Similarity=0.325 Sum_probs=63.1
Q ss_pred HHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcc
Q 047897 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD 97 (232)
Q Consensus 20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D 97 (232)
..+.+..+..+..+|+|||+|.|.++..+++ +..+++.+|. |+.++.+++ .+|++++.+|+. .+.+.+|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPVAD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSSES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcccc
Confidence 4455667777788999999999999999998 6789999998 889998888 278999999999 5555699
Q ss_pred eeec-ccCcccchHHHH
Q 047897 98 LVVA-NIPYGISSPLVA 113 (232)
Q Consensus 98 ~Vi~-n~p~~~~~~~l~ 113 (232)
+++. ++-.++..+...
T Consensus 161 ~~~l~~vLh~~~d~~~~ 177 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCV 177 (241)
T ss_dssp EEEEESSGGGS-HHHHH
T ss_pred ceeeehhhhhcchHHHH
Confidence 8775 444444444433
No 205
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.42 E-value=1.9e-07 Score=76.76 Aligned_cols=128 Identities=21% Similarity=0.264 Sum_probs=93.5
Q ss_pred HHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CC-
Q 047897 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FP- 94 (232)
Q Consensus 22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~- 94 (232)
....+.+.+++.|||.++|+|+-|..+++ ....+++.|+++.-+..+++++.+.|. .++.+...|+.... ..
T Consensus 77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~ 155 (283)
T PF01189_consen 77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPES 155 (283)
T ss_dssp HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTT
T ss_pred ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccccccccc
Confidence 34567788999999999999999999888 357999999999999999999999998 57888888887762 23
Q ss_pred CcceeecccCcccc-----hHHHHHHhcCCCCccceEehhHHHHHH---HHh----cCCCCCcccchhhe
Q 047897 95 QFDLVVANIPYGIS-----SPLVAKLVYGTKSFRSATLLLQKEFAR---RLL----ASPGDSEFNRLAVN 152 (232)
Q Consensus 95 ~~D~Vi~n~p~~~~-----~~~l~~~~~~~~~~~~~~~~~q~e~~~---rl~----~~~g~~~~~~~~~~ 152 (232)
.||.|+.+.|.... .+.+.+... ..... .....|.++.+ +++ .++|...|..+++.
T Consensus 156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~-~~~~~-~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 156 KFDRVLVDAPCSGLGTIRRNPDIKWRRS-PEDIE-KLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp TEEEEEEECSCCCGGGTTTCTTHHHHE--TTHHH-HHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccchhhcCCCccchhhhhhccchhhccc-ccccc-hHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 59999999998765 222322211 11111 12245776644 456 66777888888873
No 206
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.42 E-value=2.2e-07 Score=76.17 Aligned_cols=96 Identities=23% Similarity=0.364 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHH-------HHHHHHhhcCCCc-cEEEEE
Q 047897 14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVE-------ILNRRAADSGFHD-RLNVIS 85 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~~~~-~~~~~~ 85 (232)
-|+++.=-+.+.+...+|+.|+|.-.|||.+....+.-|+.|+|.|||-.++. -.+.|++++|..+ -+.+..
T Consensus 192 mDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~ 271 (421)
T KOG2671|consen 192 MDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT 271 (421)
T ss_pred cchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence 45677666777888899999999999999999999999999999999998876 3567888887532 367889
Q ss_pred cCCCCCCCC---CcceeecccCcccch
Q 047897 86 KDALKTEFP---QFDLVVANIPYGISS 109 (232)
Q Consensus 86 ~D~~~~~~~---~~D~Vi~n~p~~~~~ 109 (232)
+|....++. .||.|+|++||++-.
T Consensus 272 ~D~sn~~~rsn~~fDaIvcDPPYGVRe 298 (421)
T KOG2671|consen 272 ADFSNPPLRSNLKFDAIVCDPPYGVRE 298 (421)
T ss_pred ecccCcchhhcceeeEEEeCCCcchhh
Confidence 999887764 699999999999764
No 207
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.40 E-value=9.5e-07 Score=69.29 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=40.9
Q ss_pred CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhh
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAAD 74 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~ 74 (232)
..+..+|||||-+|.+|..+++ ....|+|+|||+.++..|+++.+-
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 3567899999999999999999 457899999999999999999853
No 208
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.33 E-value=4.1e-06 Score=66.77 Aligned_cols=87 Identities=24% Similarity=0.382 Sum_probs=62.7
Q ss_pred CCcccccCCHHHHHHHHHhcC-----CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 7 SKGQHILTNQRVLDSIVRKSS-----INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 7 ~~gq~fl~~~~~~~~i~~~~~-----~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
.-|.+|.-+..-.++++.... -....++||||+|.|..|..++....+|++.|.|+.|...+++ .| +
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg----~ 137 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KG----F 137 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CC----C
Confidence 357888888887777776542 1245689999999999999999888899999999999665544 33 4
Q ss_pred EEEEcCCCCCCCCCcceeec
Q 047897 82 NVISKDALKTEFPQFDLVVA 101 (232)
Q Consensus 82 ~~~~~D~~~~~~~~~D~Vi~ 101 (232)
+++..|-..-...+||+|.|
T Consensus 138 ~vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 138 TVLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred eEEehhhhhccCCceEEEee
Confidence 44444332212237999987
No 209
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.30 E-value=6.2e-06 Score=73.20 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCCCcceeeccc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFPQFDLVVANI 103 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~~~D~Vi~n~ 103 (232)
.+..+||||||.|.++..++. +...++|+|+....+..+.......++ .|+.++.+|+..+ +..++|.|+.|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 466899999999999999988 568999999999999888888888787 5899999887533 334789999999
Q ss_pred Ccccch
Q 047897 104 PYGISS 109 (232)
Q Consensus 104 p~~~~~ 109 (232)
|-.|..
T Consensus 426 PDPWpK 431 (506)
T PRK01544 426 PDPWIK 431 (506)
T ss_pred CCCCCC
Confidence 876653
No 210
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.29 E-value=7.2e-06 Score=63.02 Aligned_cols=69 Identities=28% Similarity=0.375 Sum_probs=55.4
Q ss_pred EEEEEcCCccHhH--HHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC-CCCCCcceeecc
Q 047897 33 TVLEIGPGTGNLT--LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-TEFPQFDLVVAN 102 (232)
Q Consensus 33 ~vLDiG~G~G~~t--~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~-~~~~~~D~Vi~n 102 (232)
+++|||+|.|.=+ .+++.+..+++.+|....-+...+.-....++ +|++++++++++ ....+||+|++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEEPEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHTTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecccccCCCccEEEee
Confidence 8999999999744 44455788999999999999999999998898 589999999999 333489999985
No 211
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.29 E-value=3e-06 Score=62.38 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=49.9
Q ss_pred EEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897 33 TVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 92 (232)
+++|+|||.|..+..++..+ .+++++|.++.+++.+++++..+++ +++.+++..+.+-+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeeeeCCC
Confidence 48999999999999998843 4799999999999999999988776 46888887776543
No 212
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.27 E-value=3.8e-06 Score=69.73 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeecccCcc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVANIPYG 106 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n~p~~ 106 (232)
.+|.++||+||++|+.|..+++.+.+|+|||..+ +... +.. .+++....+|...+.. .++|.++|++--.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~----L~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQS----LMD---TGQVEHLRADGFKFRPPRKNVDWLVCDMVEK 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHh----hhC---CCCEEEEeccCcccCCCCCCCCEEEEecccC
Confidence 5789999999999999999999999999999544 3222 222 2689999999987653 4789999997543
Q ss_pred cc--hHHHHHHhc
Q 047897 107 IS--SPLVAKLVY 117 (232)
Q Consensus 107 ~~--~~~l~~~~~ 117 (232)
.. ...+..++.
T Consensus 282 P~rva~lm~~Wl~ 294 (357)
T PRK11760 282 PARVAELMAQWLV 294 (357)
T ss_pred HHHHHHHHHHHHh
Confidence 32 234444443
No 213
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.27 E-value=3.4e-06 Score=65.95 Aligned_cols=81 Identities=26% Similarity=0.360 Sum_probs=58.7
Q ss_pred EEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCCC-cce-eecccCcccc
Q 047897 34 VLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFPQ-FDL-VVANIPYGIS 108 (232)
Q Consensus 34 vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~~-~D~-Vi~n~p~~~~ 108 (232)
|.||||-.|++...|++.+ .+++++|+++.-++.|+++....|+.++++++.+|.++. +... .|. ||+.+--...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI 80 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELI 80 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHH
Confidence 6899999999999999954 589999999999999999999999888999999998764 3333 664 5555533333
Q ss_pred hHHHHH
Q 047897 109 SPLVAK 114 (232)
Q Consensus 109 ~~~l~~ 114 (232)
..++..
T Consensus 81 ~~ILe~ 86 (205)
T PF04816_consen 81 IEILEA 86 (205)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 334433
No 214
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=1.1e-06 Score=68.89 Aligned_cols=96 Identities=21% Similarity=0.325 Sum_probs=67.5
Q ss_pred ccCCCcccccCCHHHHHHHHHhc-CCCCCC--EEEEEcCCccHhHHHHHh--c--CCeEEEEEcCHHHHHHHHHHHhhcC
Q 047897 4 FHKSKGQHILTNQRVLDSIVRKS-SINPDD--TVLEIGPGTGNLTLKLLE--V--SKKVHAIEIDERMVEILNRRAADSG 76 (232)
Q Consensus 4 ~~k~~gq~fl~~~~~~~~i~~~~-~~~~~~--~vLDiG~G~G~~t~~l~~--~--~~~v~~vD~~~~~~~~a~~~~~~~~ 76 (232)
+.+...-.|+.|++++.+-...+ ...... ++||||||.|.....+++ . .-.|+++|.++.+++..+++.....
T Consensus 42 fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e 121 (264)
T KOG2361|consen 42 FYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE 121 (264)
T ss_pred hhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch
Confidence 45566677899988777655444 333333 799999999999999998 2 3689999999999999998875432
Q ss_pred CCccEEEEEcCCCCCC----C--CCcceeec
Q 047897 77 FHDRLNVISKDALKTE----F--PQFDLVVA 101 (232)
Q Consensus 77 ~~~~~~~~~~D~~~~~----~--~~~D~Vi~ 101 (232)
.++.-...|+.... . +++|.|++
T Consensus 122 --~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 122 --SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred --hhhcccceeccchhccCCCCcCccceEEE
Confidence 45555555554332 1 26786664
No 215
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.24 E-value=7.3e-06 Score=64.02 Aligned_cols=93 Identities=24% Similarity=0.234 Sum_probs=74.6
Q ss_pred ccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc
Q 047897 10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86 (232)
Q Consensus 10 q~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 86 (232)
-.+...++....+...+......++||||.=+|+-+..++. ...+|+++|+|++..+.+.+..+..|...+++++++
T Consensus 53 ~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g 132 (237)
T KOG1663|consen 53 SEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG 132 (237)
T ss_pred cceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeec
Confidence 33555566666666666666778999999888876666655 578999999999999999999999999889999999
Q ss_pred CCCCC--------CCCCcceeecc
Q 047897 87 DALKT--------EFPQFDLVVAN 102 (232)
Q Consensus 87 D~~~~--------~~~~~D~Vi~n 102 (232)
++.+. +...||.+|.+
T Consensus 133 ~a~esLd~l~~~~~~~tfDfaFvD 156 (237)
T KOG1663|consen 133 PALESLDELLADGESGTFDFAFVD 156 (237)
T ss_pred chhhhHHHHHhcCCCCceeEEEEc
Confidence 99764 23479999975
No 216
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.17 E-value=9.6e-06 Score=68.03 Aligned_cols=78 Identities=24% Similarity=0.269 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhc---------CCCccEEEEEcCCCCC------CC
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADS---------GFHDRLNVISKDALKT------EF 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~---------~~~~~~~~~~~D~~~~------~~ 93 (232)
++.+|||+|||.|+.+.-... ....++|+|++...++.|+++.... ...-...++.+|.... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999999996666655 6789999999999999999999321 1112467889988753 22
Q ss_pred C--CcceeecccCccc
Q 047897 94 P--QFDLVVANIPYGI 107 (232)
Q Consensus 94 ~--~~D~Vi~n~p~~~ 107 (232)
+ .||+|-+-...|.
T Consensus 142 ~~~~FDvVScQFalHY 157 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHY 157 (331)
T ss_dssp TTS-EEEEEEES-GGG
T ss_pred cCCCcceeehHHHHHH
Confidence 2 7899998766554
No 217
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=6.4e-06 Score=64.73 Aligned_cols=116 Identities=20% Similarity=0.231 Sum_probs=76.8
Q ss_pred HHHHhcCCC-CCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCCCCCC---
Q 047897 21 SIVRKSSIN-PDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALKTEFP--- 94 (232)
Q Consensus 21 ~i~~~~~~~-~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~~--- 94 (232)
.+++..++. ++.++||||+.||++|..+++. ..+|+|+|+....+..- ++. ++++..++. |+..+..+
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~---d~rV~~~E~tN~r~l~~~~~~ 142 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRN---DPRVIVLERTNVRYLTPEDFT 142 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---Hhc---CCcEEEEecCChhhCCHHHcc
Confidence 444555554 5788999999999999999996 68999999987655432 221 145544433 44443322
Q ss_pred -CcceeecccCcccchHHHHHHhcCCCC--ccceEehhHHHHHHHHhcCCC
Q 047897 95 -QFDLVVANIPYGISSPLVAKLVYGTKS--FRSATLLLQKEFARRLLASPG 142 (232)
Q Consensus 95 -~~D~Vi~n~p~~~~~~~l~~~~~~~~~--~~~~~~~~q~e~~~rl~~~~g 142 (232)
..|++++++.|-....++..+..-... ..-..+--|-|.++..+.+.|
T Consensus 143 ~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkG 193 (245)
T COG1189 143 EKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKG 193 (245)
T ss_pred cCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCc
Confidence 578999999988777666555443322 223344568899988876443
No 218
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=4.2e-06 Score=63.69 Aligned_cols=88 Identities=22% Similarity=0.368 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF 96 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 96 (232)
+.+.+...-+.-.+.+|||+|+|+|.-+...+.. ...|++.|+++......+-|...+|+ ++.+.+.|... +.+.+
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g-~~~~~ 143 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG-SPPAF 143 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC-CCcce
Confidence 3344444434446889999999999999888884 57899999999999999999999986 49999999988 66789
Q ss_pred ceee-cccCcccc
Q 047897 97 DLVV-ANIPYGIS 108 (232)
Q Consensus 97 D~Vi-~n~p~~~~ 108 (232)
|+++ +++-|+.+
T Consensus 144 Dl~LagDlfy~~~ 156 (218)
T COG3897 144 DLLLAGDLFYNHT 156 (218)
T ss_pred eEEEeeceecCch
Confidence 9877 46766655
No 219
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=2.2e-05 Score=63.91 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=76.3
Q ss_pred cccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897 11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87 (232)
Q Consensus 11 ~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D 87 (232)
+|.+-+-+++..++.+.+.++...+|.--|.|+.+..+++. .++++|+|.|+.+++.|++.+...+ +++.++++.
T Consensus 4 ~~~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~ 81 (314)
T COG0275 4 SFRHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGN 81 (314)
T ss_pred CCCccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCc
Confidence 45566889999999999999999999999999999999993 3789999999999999999998766 789999998
Q ss_pred CCCCC-------CCCcceeeccc
Q 047897 88 ALKTE-------FPQFDLVVANI 103 (232)
Q Consensus 88 ~~~~~-------~~~~D~Vi~n~ 103 (232)
+.++. ...+|-|+.++
T Consensus 82 F~~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 82 FANLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHHHHhcCCCceeEEEEec
Confidence 86652 12556555543
No 220
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.13 E-value=4.5e-06 Score=70.43 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=92.4
Q ss_pred hcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---C-Ccc
Q 047897 25 KSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---P-QFD 97 (232)
Q Consensus 25 ~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~-~~D 97 (232)
.+++++|.+|||.++-+|+-|.+++. .-..|+|.|.+..-+...+.++...|+ .+..+.+.|..+++. + +||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCcccc
Confidence 45788999999999999998888877 457899999999999999999999998 578899999987652 2 799
Q ss_pred eeecccCcccch----HHHHHHhcCCCCccceEehhHHHH---HHHHhcCCCCCcccchhhee
Q 047897 98 LVVANIPYGISS----PLVAKLVYGTKSFRSATLLLQKEF---ARRLLASPGDSEFNRLAVNV 153 (232)
Q Consensus 98 ~Vi~n~p~~~~~----~~l~~~~~~~~~~~~~~~~~q~e~---~~rl~~~~g~~~~~~~~~~~ 153 (232)
.|..+-|...+. +-..+.......+.. ...+|++. |-.++..+|...|+++++..
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~-~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILR-YAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHH-hHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 999999987631 111111110000111 11356655 45567777779999988854
No 221
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.12 E-value=6e-06 Score=66.54 Aligned_cols=76 Identities=24% Similarity=0.392 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCC---CccEEEEEcCCCCC---CCC-Ccceee
Q 047897 30 PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGF---HDRLNVISKDALKT---EFP-QFDLVV 100 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~~D~~~~---~~~-~~D~Vi 100 (232)
...+||=||-|.|..+..+++. ..++++||+|+.+++.|++.+..... ++|++++.+|+..+ ... .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 5679999999999999999984 47999999999999999998864321 36899999999764 233 799999
Q ss_pred cccCc
Q 047897 101 ANIPY 105 (232)
Q Consensus 101 ~n~p~ 105 (232)
.+++-
T Consensus 156 ~D~~d 160 (246)
T PF01564_consen 156 VDLTD 160 (246)
T ss_dssp EESSS
T ss_pred EeCCC
Confidence 98753
No 222
>PRK00536 speE spermidine synthase; Provisional
Probab=98.03 E-value=3.3e-05 Score=62.52 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc--C-CCccEEEEEcCCCCCCCCCcceeecccCc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS--G-FHDRLNVISKDALKTEFPQFDLVVANIPY 105 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~ 105 (232)
....+||=||.|.|+.++++++...+|+.||+|+++++.+++.+... + .++|++++.. +.+...++||+||.+..+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs~~ 149 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQEP 149 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcCCC
Confidence 34579999999999999999996679999999999999999966432 1 2378888862 333233589999998654
Q ss_pred c
Q 047897 106 G 106 (232)
Q Consensus 106 ~ 106 (232)
.
T Consensus 150 ~ 150 (262)
T PRK00536 150 D 150 (262)
T ss_pred C
Confidence 3
No 223
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.03 E-value=1e-05 Score=66.18 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCc-----cEEEEEcCCCCC--------CCC
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHD-----RLNVISKDALKT--------EFP 94 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~D~~~~--------~~~ 94 (232)
++++.++|+|||.|+-..-.-. .-..++|+||.+-.++.|+++.+...--. .+.|+.+|-... +.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 5778899999999997766655 45799999999999999999987542101 267888887542 233
Q ss_pred CcceeecccCcccc
Q 047897 95 QFDLVVANIPYGIS 108 (232)
Q Consensus 95 ~~D~Vi~n~p~~~~ 108 (232)
+||+|-|-..+|..
T Consensus 196 ~fDivScQF~~HYa 209 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYA 209 (389)
T ss_pred CcceeeeeeeEeee
Confidence 59999987665543
No 224
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.02 E-value=2.2e-05 Score=60.67 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCccHhHHHHH--h--cCCeEEEEEcCHHHHHHHHHHHhhc-----------------------------
Q 047897 29 NPDDTVLEIGPGTGNLTLKLL--E--VSKKVHAIEIDERMVEILNRRAADS----------------------------- 75 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~--~--~~~~v~~vD~~~~~~~~a~~~~~~~----------------------------- 75 (232)
...-++.|.+||.|++.-.+. . .-..|+|-|+|+++++.|++|+...
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 345589999999999765543 3 2368999999999999999988532
Q ss_pred ------------CCCccEEEEEcCCCCCC------CC-CcceeecccCcccc
Q 047897 76 ------------GFHDRLNVISKDALKTE------FP-QFDLVVANIPYGIS 108 (232)
Q Consensus 76 ------------~~~~~~~~~~~D~~~~~------~~-~~D~Vi~n~p~~~~ 108 (232)
|-.....+...|+++.. .. ..|+|+.++||.-.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~ 181 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEM 181 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCS
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccc
Confidence 11123678888988742 22 46999999999754
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=2.2e-05 Score=61.51 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=60.7
Q ss_pred CCEEEEEcCCccHhHHHH--HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-C-cceeecc
Q 047897 31 DDTVLEIGPGTGNLTLKL--LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-Q-FDLVVAN 102 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l--~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~-~D~Vi~n 102 (232)
+.+++|||+|.|.=+..+ +.+..+|+.+|....-+..+++.....++ +|++++++.++++... . ||+|++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEee
Confidence 579999999999755554 44677799999999999999999988888 6899999999998754 4 9999985
No 226
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.00 E-value=3e-05 Score=60.08 Aligned_cols=96 Identities=16% Similarity=0.231 Sum_probs=63.4
Q ss_pred CCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEE
Q 047897 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNV 83 (232)
Q Consensus 6 k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 83 (232)
|.+.+.-..|+.-+-.++...-...+.+|||||||+|..+..++. +...-.-.|.++....-.+......+++.-..-
T Consensus 1 k~~spAaeRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P 80 (204)
T PF06080_consen 1 KPFSPAAERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP 80 (204)
T ss_pred CCCChhhhhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC
Confidence 345555566666665565544223343699999999999999998 456666889999987777777766665321233
Q ss_pred EEcCCCCCC--CC--------Ccceeec
Q 047897 84 ISKDALKTE--FP--------QFDLVVA 101 (232)
Q Consensus 84 ~~~D~~~~~--~~--------~~D~Vi~ 101 (232)
+.-|+.+.+ .. .+|.|++
T Consensus 81 ~~lDv~~~~w~~~~~~~~~~~~~D~i~~ 108 (204)
T PF06080_consen 81 LALDVSAPPWPWELPAPLSPESFDAIFC 108 (204)
T ss_pred eEeecCCCCCccccccccCCCCcceeee
Confidence 455665542 22 6898887
No 227
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.96 E-value=1.2e-05 Score=66.24 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89 (232)
Q Consensus 12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~ 89 (232)
|.+-|-+++++++.+.+.++..++|.--|.|+.|..+++ ...+|+|+|.|+.+++.+++++.... +++.++++++.
T Consensus 2 ~~H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~--~r~~~~~~~F~ 79 (310)
T PF01795_consen 2 FYHIPVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD--DRFIFIHGNFS 79 (310)
T ss_dssp SS---TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC--TTEEEEES-GG
T ss_pred CceecccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc--ceEEEEeccHH
Confidence 345578899999999999999999999999999999998 46999999999999999999987653 78999999987
Q ss_pred CCC--------CCCcceeeccc
Q 047897 90 KTE--------FPQFDLVVANI 103 (232)
Q Consensus 90 ~~~--------~~~~D~Vi~n~ 103 (232)
++. ...+|-|+.++
T Consensus 80 ~l~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 80 NLDEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp GHHHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHHHccCCCccCEEEEcc
Confidence 752 23677777765
No 228
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.94 E-value=0.0001 Score=57.31 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccce-eeccc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDL-VVANI 103 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~-Vi~n~ 103 (232)
.+.++.||||-.|++...+.+ ....+++.|+++..++.|.+++...++.+++++..+|.+..-.. .+|. ||+.+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 455699999999999999998 56899999999999999999999999988999999999664222 5775 44544
No 229
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.89 E-value=5.8e-05 Score=59.78 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=53.5
Q ss_pred HHHHhcCCCCC--CEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc---CC-----CccEEEEEcCCCC
Q 047897 21 SIVRKSSINPD--DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS---GF-----HDRLNVISKDALK 90 (232)
Q Consensus 21 ~i~~~~~~~~~--~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~-----~~~~~~~~~D~~~ 90 (232)
.+++..+++++ .+|||.-+|.|.-+..++..+++|+++|.|+-+....+.-+... .. ..+++++++|..+
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 45556666665 48999999999999999888999999999998876665443321 11 1489999999988
Q ss_pred CC---CCCcceeecccCccc
Q 047897 91 TE---FPQFDLVVANIPYGI 107 (232)
Q Consensus 91 ~~---~~~~D~Vi~n~p~~~ 107 (232)
+- ..++|+|..+|.|..
T Consensus 144 ~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HCCCHSS--SEEEE--S---
T ss_pred HHhhcCCCCCEEEECCCCCC
Confidence 52 348999999997764
No 230
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.88 E-value=2.1e-05 Score=61.42 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccCcc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYG 106 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p~~ 106 (232)
....++|||||.|++...+.. ...+++-+|.|..|++.++..-. .++ .+....+|-+.+++. ++|+|++.+..|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cce--EEEEEecchhcccccccchhhhhhhhhhh
Confidence 345799999999999999987 55899999999999999887642 222 366778888877775 899999999988
Q ss_pred cchHH
Q 047897 107 ISSPL 111 (232)
Q Consensus 107 ~~~~~ 111 (232)
|..++
T Consensus 149 W~NdL 153 (325)
T KOG2940|consen 149 WTNDL 153 (325)
T ss_pred hhccC
Confidence 88654
No 231
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.88 E-value=0.00011 Score=58.22 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=60.4
Q ss_pred cccCCCcccccCCHHHHHHHHHhcC--CCCCCEEEEEcCCccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCc
Q 047897 3 FFHKSKGQHILTNQRVLDSIVRKSS--INPDDTVLEIGPGTGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD 79 (232)
Q Consensus 3 ~~~k~~gq~fl~~~~~~~~i~~~~~--~~~~~~vLDiG~G~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 79 (232)
+....+-|.+.+.+-.+.+..=.+. .-.|.+||=+|=+.-. ++.++.....+|+.+|+|+.+++..++.++..|++
T Consensus 15 ~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~- 93 (243)
T PF01861_consen 15 EPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP- 93 (243)
T ss_dssp ---GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---
T ss_pred CCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-
Confidence 4566788888887777766653332 2357899999855432 33334346789999999999999999999999974
Q ss_pred cEEEEEcCCCCC-CC---CCcceeecccCcccch
Q 047897 80 RLNVISKDALKT-EF---PQFDLVVANIPYGISS 109 (232)
Q Consensus 80 ~~~~~~~D~~~~-~~---~~~D~Vi~n~p~~~~~ 109 (232)
++.++.|+.+. |. +.||++++||||....
T Consensus 94 -i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G 126 (243)
T PF01861_consen 94 -IEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEG 126 (243)
T ss_dssp -EEEE---TTS---TTTSS-BSEEEE---SSHHH
T ss_pred -eEEEEecccccCCHHHhcCCCEEEeCCCCCHHH
Confidence 99999999874 32 3799999999998753
No 232
>PRK11524 putative methyltransferase; Provisional
Probab=97.78 E-value=0.00011 Score=60.54 Aligned_cols=58 Identities=28% Similarity=0.297 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD 74 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 74 (232)
..+++.++...- .+|+.|||.-||+|..+.+..+.+.+.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 568888887764 5899999999999999999999999999999999999999999853
No 233
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.76 E-value=0.00038 Score=56.54 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCccHhHHHHHh--c--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE--V--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~--~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
..-+||||+||.|......+. . ..++...|.++..++..++..+..|+.+-++|.++|+.+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 456899999999998877776 2 3689999999999999999999999965569999999885
No 234
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00012 Score=53.37 Aligned_cols=81 Identities=16% Similarity=0.327 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ 95 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~ 95 (232)
+-++.++..+.-.+..+.+|+|+|.|.+..+.++.+ ..-+|+|+++-++..+|-..-+.|...+..|..-|..+.+...
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 344555666666676789999999999999988865 7889999999999999999988888788999999999888775
Q ss_pred cc
Q 047897 96 FD 97 (232)
Q Consensus 96 ~D 97 (232)
+.
T Consensus 139 y~ 140 (199)
T KOG4058|consen 139 YR 140 (199)
T ss_pred cc
Confidence 54
No 235
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.74 E-value=9.3e-05 Score=57.91 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCccHhHHHH--HhcCCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEEcCCCC-C------CCCCccee
Q 047897 30 PDDTVLEIGPGTGNLTLKL--LEVSKKVHAIEIDERMVEILNRRAADS-GFHDRLNVISKDALK-T------EFPQFDLV 99 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l--~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~-~------~~~~~D~V 99 (232)
++-++||||.|.--+=-.+ ...+.+.+|.|+|+..++.|+.....+ +++..++++..--.+ + -.+.||..
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 4557899998875432211 126899999999999999999999876 555556665442211 1 12479999
Q ss_pred ecccCcccchHHHH
Q 047897 100 VANIPYGISSPLVA 113 (232)
Q Consensus 100 i~n~p~~~~~~~l~ 113 (232)
.||+|||.+.+...
T Consensus 158 lCNPPFh~s~~da~ 171 (292)
T COG3129 158 LCNPPFHDSAADAR 171 (292)
T ss_pred ecCCCcchhHHHHH
Confidence 99999998866543
No 236
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.71 E-value=0.00012 Score=57.79 Aligned_cols=56 Identities=29% Similarity=0.510 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHH
Q 047897 14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNR 70 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~ 70 (232)
.+..+++++++..- .+|+.|||.-||+|..+.+..+.+.+.+|+|+++..++.|++
T Consensus 176 kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 46789999998774 578999999999999999999999999999999999998874
No 237
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.69 E-value=0.00065 Score=55.36 Aligned_cols=71 Identities=32% Similarity=0.499 Sum_probs=46.8
Q ss_pred CEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHh-hcCCCccEEEEEcCCCCCCC--CCcceeecc
Q 047897 32 DTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAA-DSGFHDRLNVISKDALKTEF--PQFDLVVAN 102 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n 102 (232)
.+|+=||||+=-+|..++. .+..|+++|+|+++++.+++... ..|+..++.|+.+|+.+... ..||+|+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4999999998877776665 24679999999999999999887 45566789999999987653 489988864
No 238
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.62 E-value=0.00029 Score=56.17 Aligned_cols=71 Identities=31% Similarity=0.377 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeec
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVA 101 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~ 101 (232)
...++|+|||||.--++..... .+..++|+|+|..+++.....+...+. +.++...|.+.-+.+ ..|+...
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCCCcchhhH
Confidence 3467999999999999998877 357999999999999999999988875 477777888876433 5676553
No 239
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00037 Score=58.33 Aligned_cols=123 Identities=24% Similarity=0.286 Sum_probs=85.1
Q ss_pred hcCCCCCCEEEEEcCCccHhHHHHHhc--C----CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------
Q 047897 25 KSSINPDDTVLEIGPGTGNLTLKLLEV--S----KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------ 92 (232)
Q Consensus 25 ~~~~~~~~~vLDiG~G~G~~t~~l~~~--~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------ 92 (232)
.++++++++|||.++.+|.-|..+++. . ..|++-|.|+.-+..++..+..... ++..+...|+...+
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceecccccccc
Confidence 457789999999999999999998882 1 2899999999988888888754432 46666666665442
Q ss_pred -----CCCcceeecccCcccc-----hHHHHH--HhcCCCCccceEehhHHHHHH---HHhcCCCCCcccchhh
Q 047897 93 -----FPQFDLVVANIPYGIS-----SPLVAK--LVYGTKSFRSATLLLQKEFAR---RLLASPGDSEFNRLAV 151 (232)
Q Consensus 93 -----~~~~D~Vi~n~p~~~~-----~~~l~~--~~~~~~~~~~~~~~~q~e~~~---rl~~~~g~~~~~~~~~ 151 (232)
...||.|.++.|.... .+-+++ +.... ......+|..+.+ +++..+|...|+++|.
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~---~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQR---ALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhh---ccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 1258999999998755 122221 11111 0122356777754 4677888899988876
No 240
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.58 E-value=0.00019 Score=58.91 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=55.6
Q ss_pred EEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----CCCcceeecccCccc
Q 047897 33 TVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----FPQFDLVVANIPYGI 107 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----~~~~D~Vi~n~p~~~ 107 (232)
+++|+.||.|.++..+.+.+. .+.++|+++.+++..+.|+.. . ++.+|+.++. .+.+|++++.+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------K-LIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------C-CccCccccCchhhcCCCCCEEEeCCCChh
Confidence 589999999999999888654 567999999999999888742 2 5677777664 347899999999875
Q ss_pred ch
Q 047897 108 SS 109 (232)
Q Consensus 108 ~~ 109 (232)
.+
T Consensus 75 fS 76 (275)
T cd00315 75 FS 76 (275)
T ss_pred hh
Confidence 43
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.58 E-value=0.00018 Score=59.97 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCCccHhHHHHHh-c-CCeEEEEEcCHHHHHHHHHHH--hhc----CCCccEEEEEcCCCCCCC---CCcc
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE-V-SKKVHAIEIDERMVEILNRRA--ADS----GFHDRLNVISKDALKTEF---PQFD 97 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~-~-~~~v~~vD~~~~~~~~a~~~~--~~~----~~~~~~~~~~~D~~~~~~---~~~D 97 (232)
+.-.+||=+|.|.|.-.+++++ + ..+++-+|.||+|++.++.+. +.. -.++|++++..|+.++-- +.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 3456899999999999999999 3 589999999999999999443 221 124799999999988632 3799
Q ss_pred eeecccCcccc
Q 047897 98 LVVANIPYGIS 108 (232)
Q Consensus 98 ~Vi~n~p~~~~ 108 (232)
.||.++|-..+
T Consensus 368 ~vIVDl~DP~t 378 (508)
T COG4262 368 VVIVDLPDPST 378 (508)
T ss_pred EEEEeCCCCCC
Confidence 99999875433
No 242
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.56 E-value=0.00057 Score=57.05 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=50.9
Q ss_pred HHHHHhcCCCCCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEE--EEcCCCC
Q 047897 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGFHDRLNV--ISKDALK 90 (232)
Q Consensus 20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~--~~~D~~~ 90 (232)
..|++.+ .++..++|+|||.|.-+..+++ ....++++|+|.++++.+.+++....+ +.+++ +.+|+.+
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHH
Confidence 3444444 3666899999999998887776 136799999999999999999973333 34555 8888865
No 243
>PRK13699 putative methylase; Provisional
Probab=97.55 E-value=0.00047 Score=54.95 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=52.3
Q ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS 75 (232)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~ 75 (232)
+..+++.+++... .+|+.|||.-||+|..+.+..+.+.+.+|+|++++..+.+.+++...
T Consensus 149 P~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 149 PVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred cHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4568888887654 57899999999999999999889999999999999999999998653
No 244
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.53 E-value=0.00053 Score=61.07 Aligned_cols=101 Identities=26% Similarity=0.412 Sum_probs=74.0
Q ss_pred CCCcccccCCHHHHHHHHHhcCCC--CCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCC
Q 047897 6 KSKGQHILTNQRVLDSIVRKSSIN--PDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGF 77 (232)
Q Consensus 6 k~~gq~fl~~~~~~~~i~~~~~~~--~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~ 77 (232)
+..|+ |.+.+.+++.+.+.+... ++..+.|..||+|.+...... ....++|-|....+...++.++..++.
T Consensus 192 t~~g~-~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 192 KSGGE-FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred CcCce-eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 44555 666789999888877643 557899999999998876543 124689999999999999999766654
Q ss_pred C-ccEEEEEcCCCCCC-C---CCcceeecccCccc
Q 047897 78 H-DRLNVISKDALKTE-F---PQFDLVVANIPYGI 107 (232)
Q Consensus 78 ~-~~~~~~~~D~~~~~-~---~~~D~Vi~n~p~~~ 107 (232)
. +......+|-+..+ . ..||.|++|+||+.
T Consensus 271 ~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 271 DYANFNIINADTLTTKEWENENGFEVVVSNPPYSI 305 (501)
T ss_pred CccccCcccCCcCCCccccccccCCEEeecCCccc
Confidence 3 23455566665532 1 26899999999975
No 245
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.50 E-value=0.00055 Score=56.14 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADS 75 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~ 75 (232)
..++.++......-...+|||+|||+|.-+-++.+ ...+++++|.|+.|++.++..+...
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 44555555554333456899999999987766665 3578999999999999999987654
No 246
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00029 Score=54.69 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=50.1
Q ss_pred CCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC----------C
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF----------P 94 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~----------~ 94 (232)
+.++..|+|+|+-+|+.+..+++. ..+|+|+|+.|-- .. +++.++++|+++.+. .
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~-~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PI-PGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cC-CCceEEeeeccCccHHHHHHHHcCCC
Confidence 357899999999999999999883 3459999998731 11 569999999987642 1
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
.+|+|++++
T Consensus 111 ~~DvV~sD~ 119 (205)
T COG0293 111 PVDVVLSDM 119 (205)
T ss_pred CcceEEecC
Confidence 369999986
No 247
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.45 E-value=0.00057 Score=56.20 Aligned_cols=91 Identities=15% Similarity=0.267 Sum_probs=62.7
Q ss_pred cccCCHHHHHHHHHhcCCC-CCCEEEEEcCCccH----hHHHHHhc------CCeEEEEEcCHHHHHHHHHHHhh-----
Q 047897 11 HILTNQRVLDSIVRKSSIN-PDDTVLEIGPGTGN----LTLKLLEV------SKKVHAIEIDERMVEILNRRAAD----- 74 (232)
Q Consensus 11 ~fl~~~~~~~~i~~~~~~~-~~~~vLDiG~G~G~----~t~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~----- 74 (232)
.|+.++...+.+.+.+... ..-+|+..||++|- ++..+.+. ..+|+|+|+|+.+++.|++-.-.
T Consensus 95 ~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r 174 (287)
T PRK10611 95 AFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELK 174 (287)
T ss_pred CccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 4778877777776644221 23589999999994 44444441 25799999999999999876311
Q ss_pred ------------------cC-------CCccEEEEEcCCCCCCC---CCcceeec
Q 047897 75 ------------------SG-------FHDRLNVISKDALKTEF---PQFDLVVA 101 (232)
Q Consensus 75 ------------------~~-------~~~~~~~~~~D~~~~~~---~~~D~Vi~ 101 (232)
.+ +...+.|.+.|..+.+. +.||+|+|
T Consensus 175 ~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~c 229 (287)
T PRK10611 175 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFC 229 (287)
T ss_pred cCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeH
Confidence 00 12467888999987543 47999998
No 248
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.40 E-value=0.0024 Score=50.07 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=63.4
Q ss_pred HHHHHHHHh---cCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 17 RVLDSIVRK---SSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 17 ~~~~~i~~~---~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
++.+.++.- +.+.+|.+||-+|.++|.....+++ ....|+|||.++....-+-..++.. +|+--+-+|+..
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~ 133 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARH 133 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTS
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCC
Confidence 466666544 4577899999999999999999988 4679999999996655554444433 689899999975
Q ss_pred CC-----CCCcceeecccCcccchHHH
Q 047897 91 TE-----FPQFDLVVANIPYGISSPLV 112 (232)
Q Consensus 91 ~~-----~~~~D~Vi~n~p~~~~~~~l 112 (232)
.. .+.+|+|++++.-.-...++
T Consensus 134 P~~Y~~lv~~VDvI~~DVaQp~Qa~I~ 160 (229)
T PF01269_consen 134 PEKYRMLVEMVDVIFQDVAQPDQARIA 160 (229)
T ss_dssp GGGGTTTS--EEEEEEE-SSTTHHHHH
T ss_pred hHHhhcccccccEEEecCCChHHHHHH
Confidence 42 24789999998755554444
No 249
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.39 E-value=0.00036 Score=54.22 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=51.8
Q ss_pred cccCCHHHHHHHHHhcC--------CCCCCEEEEEcCCccH----hHHHHHh-----c--CCeEEEEEcCHHHHHHHHHH
Q 047897 11 HILTNQRVLDSIVRKSS--------INPDDTVLEIGPGTGN----LTLKLLE-----V--SKKVHAIEIDERMVEILNRR 71 (232)
Q Consensus 11 ~fl~~~~~~~~i~~~~~--------~~~~~~vLDiG~G~G~----~t~~l~~-----~--~~~v~~vD~~~~~~~~a~~~ 71 (232)
.|+.++...+.+.+.+- ....-+|+..||++|- ++..+.+ . ..+++|.|+|+.+++.|++-
T Consensus 4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 36666665555544332 1234589999999994 4444444 1 24899999999999998753
Q ss_pred Hhhc-------------------C--------CCccEEEEEcCCCC-CC-CCCcceeec
Q 047897 72 AADS-------------------G--------FHDRLNVISKDALK-TE-FPQFDLVVA 101 (232)
Q Consensus 72 ~~~~-------------------~--------~~~~~~~~~~D~~~-~~-~~~~D~Vi~ 101 (232)
.-.. + +..++.|.+.|..+ .+ ...||+|+|
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~C 142 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFC 142 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEe
Confidence 2100 1 01478999999998 22 238999998
No 250
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.31 E-value=0.0004 Score=53.20 Aligned_cols=72 Identities=26% Similarity=0.415 Sum_probs=49.4
Q ss_pred HHHHHhcC-CCC--CCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897 20 DSIVRKSS-INP--DDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE- 92 (232)
Q Consensus 20 ~~i~~~~~-~~~--~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~- 92 (232)
.++.+..+ +.+ +.++||+||++|+++..+++.. .+|+|+|+.+. ... .++..+++|+.+..
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPEN 77 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhH
Confidence 34555555 344 4899999999999999999965 89999999875 111 35677777765421
Q ss_pred -----------CCCcceeeccc
Q 047897 93 -----------FPQFDLVVANI 103 (232)
Q Consensus 93 -----------~~~~D~Vi~n~ 103 (232)
...+|+|+++.
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE--
T ss_pred HHhhhhhccccccCcceecccc
Confidence 13689999987
No 251
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.24 E-value=0.0012 Score=51.54 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeecc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n 102 (232)
...+.||.|+|.|..|..++- ...+|-.+|..+.+++.|++.+.... ..-.++.+.-..++..+ .||+|.+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEeh
Confidence 356899999999999998766 67899999999999999998876522 12357777777776543 79999874
No 252
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.23 E-value=0.00075 Score=57.65 Aligned_cols=59 Identities=32% Similarity=0.516 Sum_probs=52.5
Q ss_pred EEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 33 TVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
.|||||+|+|.++...++ .+..|+|+|.=..|.+.|++....+|..+++.+++.-..+.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 589999999999999888 55789999999999999999999999988999988766554
No 253
>PHA01634 hypothetical protein
Probab=97.21 E-value=0.0023 Score=45.57 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADS 75 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~ 75 (232)
.+.+|+|||.+.|.-+..++- .+.+|+++|.++.+.+..+++.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 578999999999999988877 4578999999999999999988654
No 254
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=97.11 E-value=0.0011 Score=54.30 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=55.5
Q ss_pred EEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC--------C-CCCcceeeccc
Q 047897 35 LEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT--------E-FPQFDLVVANI 103 (232)
Q Consensus 35 LDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--------~-~~~~D~Vi~n~ 103 (232)
+|||.|.-.+--.+-. .+...++.|+|.-.++.|.++...+++.+.+.+++....+. . ...||.+.||+
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNP 186 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNP 186 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCC
Confidence 6888777554333322 56889999999999999999999998877888887744322 1 12589999999
Q ss_pred Ccccc
Q 047897 104 PYGIS 108 (232)
Q Consensus 104 p~~~~ 108 (232)
||.-.
T Consensus 187 PFfe~ 191 (419)
T KOG2912|consen 187 PFFEN 191 (419)
T ss_pred chhhc
Confidence 98765
No 255
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.06 E-value=0.0066 Score=49.45 Aligned_cols=71 Identities=24% Similarity=0.350 Sum_probs=49.7
Q ss_pred CCEEEEEcCCccH----hHHHHHh-c------CCeEEEEEcCHHHHHHHHHHHhh-----cCC-----------------
Q 047897 31 DDTVLEIGPGTGN----LTLKLLE-V------SKKVHAIEIDERMVEILNRRAAD-----SGF----------------- 77 (232)
Q Consensus 31 ~~~vLDiG~G~G~----~t~~l~~-~------~~~v~~vD~~~~~~~~a~~~~~~-----~~~----------------- 77 (232)
.-+|+..||++|- ++..+.+ . ..+|+|.|+|...++.|+.-.-. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5589999999994 4555554 1 36899999999999988753322 111
Q ss_pred ------CccEEEEEcCCCCCC-CC-Ccceeec
Q 047897 78 ------HDRLNVISKDALKTE-FP-QFDLVVA 101 (232)
Q Consensus 78 ------~~~~~~~~~D~~~~~-~~-~~D~Vi~ 101 (232)
...|.|...|.++.+ .. .||+|+|
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC 208 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC 208 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEE
Confidence 125667777777765 44 6999999
No 256
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.05 E-value=0.00064 Score=51.14 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=38.2
Q ss_pred EEEEcCHHHHHHHHHHHhhcC--CCccEEEEEcCCCCCCCC--Ccceeeccc
Q 047897 56 HAIEIDERMVEILNRRAADSG--FHDRLNVISKDALKTEFP--QFDLVVANI 103 (232)
Q Consensus 56 ~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~--~~D~Vi~n~ 103 (232)
+|+|+|++|++.|+++....+ ...+++++++|+.+++++ +||.|+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~ 52 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY 52 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc
Confidence 489999999999988765322 124799999999998875 699999754
No 257
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.01 E-value=0.0014 Score=54.73 Aligned_cols=67 Identities=27% Similarity=0.429 Sum_probs=52.7
Q ss_pred EEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CC-CcceeecccCccc
Q 047897 33 TVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FP-QFDLVVANIPYGI 107 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~-~~D~Vi~n~p~~~ 107 (232)
+++|+-||.|.++..+...+ .-+.++|+|+.+.+..+.|+ + ....+|+.++. .+ .+|++++.+|...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~------~--~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF------P--EVICGDITEIDPSDLPKDVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH------T--EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc------c--ccccccccccccccccccceEEEeccCCce
Confidence 68999999999999998866 46779999999999999988 3 78899998875 34 5999999998654
No 258
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.96 E-value=0.0016 Score=54.58 Aligned_cols=67 Identities=22% Similarity=0.345 Sum_probs=53.6
Q ss_pred EEEEcCCccHhHHHHHhcCCeE-EEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CCCcceeecccCccc
Q 047897 34 VLEIGPGTGNLTLKLLEVSKKV-HAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FPQFDLVVANIPYGI 107 (232)
Q Consensus 34 vLDiG~G~G~~t~~l~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~~~D~Vi~n~p~~~ 107 (232)
|+|+.||.|.++..+.+.+.++ .++|+++..++..+.|+. . .++++|+.++. .+.+|++++.+|...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 5899999999999998876665 589999999999888863 2 45668887765 346899999998654
No 259
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.91 E-value=0.0024 Score=51.03 Aligned_cols=69 Identities=23% Similarity=0.343 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCCC-CEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897 16 QRVLDSIVRKSSINPD-DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP 94 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~-~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~ 94 (232)
.+=++.|++.+...++ ..|-|+|||.+.++. .....|+.+|+.+ .+-+++.+|+.+.|.+
T Consensus 165 ~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~ 225 (325)
T KOG3045|consen 165 ENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACDMRNVPLE 225 (325)
T ss_pred CChHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeeccccCCcCc
Confidence 3445666666655544 568999999998876 3456899999754 3456789999998875
Q ss_pred --Ccceeeccc
Q 047897 95 --QFDLVVANI 103 (232)
Q Consensus 95 --~~D~Vi~n~ 103 (232)
+.|+++.-+
T Consensus 226 d~svDvaV~CL 236 (325)
T KOG3045|consen 226 DESVDVAVFCL 236 (325)
T ss_pred cCcccEEEeeH
Confidence 789877644
No 260
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.011 Score=45.72 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=67.4
Q ss_pred HHHHHHHHh---cCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 17 RVLDSIVRK---SSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 17 ~~~~~i~~~---~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
++.+.|+.- +.+++|++||=+|+.+|....++++ ....++|||.++....-+-..+... +|+--+.+|+...
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P 136 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKP 136 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCc
Confidence 466666654 4578999999999999999999998 4478999999987665544444432 6788999999764
Q ss_pred C-----CCCcceeecccCcccchHH
Q 047897 92 E-----FPQFDLVVANIPYGISSPL 111 (232)
Q Consensus 92 ~-----~~~~D~Vi~n~p~~~~~~~ 111 (232)
. .+..|+|+.++.-.....+
T Consensus 137 ~~Y~~~Ve~VDviy~DVAQp~Qa~I 161 (231)
T COG1889 137 EKYRHLVEKVDVIYQDVAQPNQAEI 161 (231)
T ss_pred HHhhhhcccccEEEEecCCchHHHH
Confidence 3 2468999988754433333
No 261
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.74 E-value=0.0038 Score=48.54 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCC-CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--
Q 047897 18 VLDSIVRKSSINP-DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-- 94 (232)
Q Consensus 18 ~~~~i~~~~~~~~-~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-- 94 (232)
=++.+++.+.-.+ +..|-|+|||.+.++..+. ....|...|.-.. +-.++.+|+...|++
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~----------------n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP----------------NPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------------STTEEES-TTS-S--TT
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC----------------CCCEEEecCccCcCCCC
Confidence 3456666665433 5689999999999997654 3567999998552 234788999998876
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
+.|++|..+.
T Consensus 122 svDv~VfcLS 131 (219)
T PF05148_consen 122 SVDVAVFCLS 131 (219)
T ss_dssp -EEEEEEES-
T ss_pred ceeEEEEEhh
Confidence 7898887654
No 262
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.74 E-value=0.0011 Score=56.38 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=65.8
Q ss_pred ccCCCcccccCCHHHHH--HHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCcc-
Q 047897 4 FHKSKGQHILTNQRVLD--SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDR- 80 (232)
Q Consensus 4 ~~k~~gq~fl~~~~~~~--~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~- 80 (232)
|+-.+|..|...+-..+ ++.. -.++|+.|.|+.||.|-++..++..+++|++-|.+++++++++.++..+.+.+.
T Consensus 223 Fk~DfskVYWnsRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~ 300 (495)
T KOG2078|consen 223 FKFDFSKVYWNSRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSA 300 (495)
T ss_pred EEEecceEEeeccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhh
Confidence 44455555544332222 2222 235789999999999999999999899999999999999999999988776544
Q ss_pred EEEEEcCCCCC
Q 047897 81 LNVISKDALKT 91 (232)
Q Consensus 81 ~~~~~~D~~~~ 91 (232)
+++++.|+.++
T Consensus 301 iei~Nmda~~F 311 (495)
T KOG2078|consen 301 IEIFNMDAKDF 311 (495)
T ss_pred eeeecccHHHH
Confidence 99999998665
No 263
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.67 E-value=0.0069 Score=49.03 Aligned_cols=69 Identities=25% Similarity=0.371 Sum_probs=45.6
Q ss_pred CCEEEEEcCCccHhHHHHHh--c--------CCeEEEEEcCHHHHHHHHHHHhhcC-----CCccEEEEEcCCCCCCCCC
Q 047897 31 DDTVLEIGPGTGNLTLKLLE--V--------SKKVHAIEIDERMVEILNRRAADSG-----FHDRLNVISKDALKTEFPQ 95 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~--~--------~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~~~D~~~~~~~~ 95 (232)
.-+|+|+|+|+|.++..+++ . ..+++.||+|+.+.+.-++++.... ...++.+ ..+..+.+ .
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--~ 95 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--F 95 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS---C
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc--C
Confidence 36899999999999999988 1 2479999999999999888886631 2235666 33443333 2
Q ss_pred cceeecc
Q 047897 96 FDLVVAN 102 (232)
Q Consensus 96 ~D~Vi~n 102 (232)
.-+|++|
T Consensus 96 ~~~iiaN 102 (252)
T PF02636_consen 96 PGFIIAN 102 (252)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 2345554
No 264
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.64 E-value=0.012 Score=42.73 Aligned_cols=66 Identities=33% Similarity=0.587 Sum_probs=45.3
Q ss_pred EEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC--CCCC---Ccceeec
Q 047897 34 VLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK--TEFP---QFDLVVA 101 (232)
Q Consensus 34 vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~--~~~~---~~D~Vi~ 101 (232)
++|+|||+|..+ .+... ...++++|.++.++..++......+. ..+.+..+|... .++. .+|.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999976 33332 24899999999999885555433111 116788888776 4544 5888843
No 265
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.59 E-value=0.0033 Score=48.44 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=47.5
Q ss_pred CEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcC------CCccEEEEEcCCCCC
Q 047897 32 DTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSG------FHDRLNVISKDALKT 91 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~~~D~~~~ 91 (232)
-.+.|||||-|.++..++. +..-++|.||-....+..+++....+ .-.|+.+.+.++..+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 4589999999999999988 56788999999888888888776543 124677888887765
No 266
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.57 E-value=0.0043 Score=54.17 Aligned_cols=81 Identities=23% Similarity=0.384 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCC--CCC--CEEEEEcCCccHhHHHHHhcCCeEEEE---EcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897 16 QRVLDSIVRKSSI--NPD--DTVLEIGPGTGNLTLKLLEVSKKVHAI---EIDERMVEILNRRAADSGFHDRLNVISKDA 88 (232)
Q Consensus 16 ~~~~~~i~~~~~~--~~~--~~vLDiG~G~G~~t~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ 88 (232)
...++.|.+.+.. ..+ .++||+|||.|.++..|++++-..+.+ |..+..++.|-++ |++.-+.+. -.
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~--~s 172 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER----GVPAMIGVL--GS 172 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc----Ccchhhhhh--cc
Confidence 3456666666654 222 368999999999999999876544444 3444555555444 332111111 12
Q ss_pred CCCCCC--Ccceeecc
Q 047897 89 LKTEFP--QFDLVVAN 102 (232)
Q Consensus 89 ~~~~~~--~~D~Vi~n 102 (232)
..+|++ .||+|-|.
T Consensus 173 ~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCS 188 (506)
T ss_pred ccccCCccchhhhhcc
Confidence 234544 79998874
No 267
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.56 E-value=0.0011 Score=54.01 Aligned_cols=73 Identities=26% Similarity=0.304 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCccHhHH-HHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeecc
Q 047897 30 PDDTVLEIGPGTGNLTL-KLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN 102 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~-~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n 102 (232)
.+..|+|+-+|.|++|. .+.. ....|+|+|.+|..++.+++++..+++.++..+++||-...-.. ..|.|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec
Confidence 45789999999999999 5555 56789999999999999999999888777888888887665443 55766543
No 268
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.0072 Score=50.92 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=56.7
Q ss_pred CCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-----CcceeecccC
Q 047897 31 DDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-----QFDLVVANIP 104 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-----~~D~Vi~n~p 104 (232)
.-+++|+-||.|.+...+...+ .-+.++|+|+..++..+.|+.. -.++.+|+.+.... ++|++++.+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 3479999999999999988866 4566999999999999988742 45677777755431 6799999999
Q ss_pred cccc
Q 047897 105 YGIS 108 (232)
Q Consensus 105 ~~~~ 108 (232)
+..-
T Consensus 77 CQ~F 80 (328)
T COG0270 77 CQDF 80 (328)
T ss_pred Ccch
Confidence 7644
No 269
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.52 E-value=0.019 Score=50.62 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=56.0
Q ss_pred CCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------------
Q 047897 31 DDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----------------- 92 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----------------- 92 (232)
.-+++|+-||.|+++..+-..+. -|.++|+++.+.+..+.|+... +....+.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence 44899999999999999977554 5579999999999888886321 22345566666653
Q ss_pred --CCCcceeecccCcccch
Q 047897 93 --FPQFDLVVANIPYGISS 109 (232)
Q Consensus 93 --~~~~D~Vi~n~p~~~~~ 109 (232)
.+..|++++.+|+..-+
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred ccCCCCCEEEEcCCCCccc
Confidence 23679999999876543
No 270
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.02 Score=48.10 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=47.2
Q ss_pred ccCCHHHHHHHHH-----------hcCCCCCCEEEEEcCCccHhHHHHHh----------cCCeEEEEEcCHHHHHHHHH
Q 047897 12 ILTNQRVLDSIVR-----------KSSINPDDTVLEIGPGTGNLTLKLLE----------VSKKVHAIEIDERMVEILNR 70 (232)
Q Consensus 12 fl~~~~~~~~i~~-----------~~~~~~~~~vLDiG~G~G~~t~~l~~----------~~~~v~~vD~~~~~~~~a~~ 70 (232)
|.+.|++..-+-+ .......-.++|||+|.|.++..+++ ...++..||+|+++.+.=++
T Consensus 48 FiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~ 127 (370)
T COG1565 48 FITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE 127 (370)
T ss_pred eeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence 7777766543332 22322345799999999999998887 15689999999999988888
Q ss_pred HHhhc
Q 047897 71 RAADS 75 (232)
Q Consensus 71 ~~~~~ 75 (232)
++...
T Consensus 128 ~L~~~ 132 (370)
T COG1565 128 TLKAT 132 (370)
T ss_pred HHhcc
Confidence 87654
No 271
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.38 E-value=0.011 Score=47.86 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=39.6
Q ss_pred CEEEEEcCCccH--hHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 32 DTVLEIGPGTGN--LTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 32 ~~vLDiG~G~G~--~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
...||||||.-. .+.++++ +.++|+-+|.||-.+.+++..+....- ++..++++|+.+.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence 469999999763 5556655 679999999999999999999876532 3489999999874
No 272
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.37 E-value=0.016 Score=48.44 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=60.9
Q ss_pred CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecc-cCcccch
Q 047897 31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVAN-IPYGISS 109 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n-~p~~~~~ 109 (232)
-...+|+|.|.|.++..++....++-+++.|...+-.++..+. .| ++.+.||.++- .|+-|+|+.- +--+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPKGDAIWMKWILHDWTD 251 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCCcCeEEEEeecccCCh
Confidence 4789999999999999999966779999999988888777764 33 78899999887 6777877752 3344555
Q ss_pred HHHHHHh
Q 047897 110 PLVAKLV 116 (232)
Q Consensus 110 ~~l~~~~ 116 (232)
+.+.+++
T Consensus 252 edcvkiL 258 (342)
T KOG3178|consen 252 EDCVKIL 258 (342)
T ss_pred HHHHHHH
Confidence 4444443
No 273
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.27 E-value=0.0017 Score=50.14 Aligned_cols=65 Identities=20% Similarity=0.383 Sum_probs=51.8
Q ss_pred CCcccccCCHHHHHHHHHhcCC---CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHH
Q 047897 7 SKGQHILTNQRVLDSIVRKSSI---NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRR 71 (232)
Q Consensus 7 ~~gq~fl~~~~~~~~i~~~~~~---~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~ 71 (232)
..|.+|+-+++--++++..-++ +...++||+|+|.|-+|..++....+|+|.|.|..|...+++.
T Consensus 86 grGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 86 GRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred ccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence 4678888888877777754432 2346899999999999999988778899999999988776654
No 274
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.09 E-value=0.0044 Score=42.95 Aligned_cols=68 Identities=25% Similarity=0.238 Sum_probs=24.4
Q ss_pred EEEcCCccHhHHHHHh---cC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCCCcceeeccc
Q 047897 35 LEIGPGTGNLTLKLLE---VS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFPQFDLVVANI 103 (232)
Q Consensus 35 LDiG~G~G~~t~~l~~---~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~~~D~Vi~n~ 103 (232)
||||+..|..+..+++ .. .+++++|..+. .+..++..+..++.++++++.+|..+. +.+++|+++.+-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 6999999999888877 22 37999999995 334444444445557899999999754 224789998764
No 275
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.01 Score=45.28 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=48.2
Q ss_pred CCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCCC----------CC
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALKT----------EF 93 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~----------~~ 93 (232)
++++++|||+||.+|..+....+ +...|.|||+-.- ... +.+.++.+ |+.+. +.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPP-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCC-CCcccccccccCCHHHHHHHHHhCCC
Confidence 35799999999999999998887 4688999998431 111 34666666 77654 22
Q ss_pred CCcceeecccCcc
Q 047897 94 PQFDLVVANIPYG 106 (232)
Q Consensus 94 ~~~D~Vi~n~p~~ 106 (232)
...|+|++++--+
T Consensus 135 r~VdvVlSDMapn 147 (232)
T KOG4589|consen 135 RPVDVVLSDMAPN 147 (232)
T ss_pred CcccEEEeccCCC
Confidence 2679999987433
No 276
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.05 E-value=0.0094 Score=41.19 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCH
Q 047897 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDE 62 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~ 62 (232)
+....+|||||.|.+..-|..-+.+-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 344689999999999999999889999999643
No 277
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=96.02 E-value=0.025 Score=47.82 Aligned_cols=43 Identities=35% Similarity=0.422 Sum_probs=35.7
Q ss_pred CCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRR 71 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~ 71 (232)
.+-+.|+|+|.|.|+++..+.- .+..|+|||-|..+.+.|++.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 3456899999999999999876 789999999998777666543
No 278
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=0.021 Score=48.23 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=68.9
Q ss_pred HHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC---
Q 047897 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--- 94 (232)
Q Consensus 21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--- 94 (232)
.....+++.+|..|+|++|-+|.-|..++. ...++.|+|.|..-.+..++.+...|. ..++...+|++..+.+
T Consensus 204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t~~~~~~ 282 (413)
T KOG2360|consen 204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNTATPEKF 282 (413)
T ss_pred chhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-CccccccccccCCCCcccc
Confidence 344566777889999999999999888887 468999999999999999999999887 4788889999885322
Q ss_pred -CcceeecccCccc
Q 047897 95 -QFDLVVANIPYGI 107 (232)
Q Consensus 95 -~~D~Vi~n~p~~~ 107 (232)
..-.++++++...
T Consensus 283 ~~v~~iL~DpscSg 296 (413)
T KOG2360|consen 283 RDVTYILVDPSCSG 296 (413)
T ss_pred cceeEEEeCCCCCC
Confidence 3346777776543
No 279
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.92 E-value=0.015 Score=47.04 Aligned_cols=103 Identities=16% Similarity=0.302 Sum_probs=73.2
Q ss_pred ccCCCcccccCCHHHHHHHHHhc--CCCCCCEEEEEcCCccHhHHHHH--hcCCeEEEEEcCHHHHHHHHHHHhhcCCCc
Q 047897 4 FHKSKGQHILTNQRVLDSIVRKS--SINPDDTVLEIGPGTGNLTLKLL--EVSKKVHAIEIDERMVEILNRRAADSGFHD 79 (232)
Q Consensus 4 ~~k~~gq~fl~~~~~~~~i~~~~--~~~~~~~vLDiG~G~G~~t~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 79 (232)
+...+.|.|.+++-.+.++.-.. +--.|..|+=+| -.-..+.+++ ....+|..+|+|+.++..-.+.+...|+ .
T Consensus 124 p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~ 201 (354)
T COG1568 124 PLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-N 201 (354)
T ss_pred cchhcccccccccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-c
Confidence 44567888888666655543211 122466788888 3333333333 3678999999999999999999999998 5
Q ss_pred cEEEEEcCCCCCCC----CCcceeecccCcccc
Q 047897 80 RLNVISKDALKTEF----PQFDLVVANIPYGIS 108 (232)
Q Consensus 80 ~~~~~~~D~~~~~~----~~~D~Vi~n~p~~~~ 108 (232)
|++.+.-|..+.-. ..||+++.+||+.+.
T Consensus 202 ~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~ 234 (354)
T COG1568 202 NIEAFVFDLRNPLPEDLKRKFDVFITDPPETIK 234 (354)
T ss_pred chhheeehhcccChHHHHhhCCeeecCchhhHH
Confidence 78888888876422 279999999997655
No 280
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.62 E-value=0.027 Score=43.87 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
+.+.|+|+|.-.|+-+...++ ..++|+|+|++-..... +..+.+.+.+++++++||..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDP 97 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSST
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCH
Confidence 456999999999887766654 35899999997544322 2233334447899999999765
No 281
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.62 E-value=0.076 Score=41.58 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC----CC
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK----TE 92 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~----~~ 92 (232)
+.....+.+. .+|.+||+||-|.|.....+.+ ...+-+.+|.+++.++..++..-... +|+.+..|--.+ ++
T Consensus 90 iMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L~ 166 (271)
T KOG1709|consen 90 IMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTLP 166 (271)
T ss_pred HHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhcccc
Confidence 3334444443 5788999999999998888877 56788899999999998887764322 678888875544 34
Q ss_pred CCCcceeecc
Q 047897 93 FPQFDLVVAN 102 (232)
Q Consensus 93 ~~~~D~Vi~n 102 (232)
...||-|.-+
T Consensus 167 d~~FDGI~yD 176 (271)
T KOG1709|consen 167 DKHFDGIYYD 176 (271)
T ss_pred ccCcceeEee
Confidence 4478988865
No 282
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.59 E-value=0.041 Score=47.19 Aligned_cols=86 Identities=24% Similarity=0.377 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCc-cEEEEEcCCCCCC---CCCcceeecc
Q 047897 30 PDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHD-RLNVISKDALKTE---FPQFDLVVAN 102 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~D~~~~~---~~~~D~Vi~n 102 (232)
.+-++||.=+|+|.=+...+.. ..+|++-|+|+++++..++|++.+++.+ ++++.+.|+..+- ...||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3458999999999988777662 4799999999999999999999999876 6999999997753 3368877666
Q ss_pred cCcccchHHHHHHh
Q 047897 103 IPYGISSPLVAKLV 116 (232)
Q Consensus 103 ~p~~~~~~~l~~~~ 116 (232)
||+...|.+...+
T Consensus 129 -PfGSp~pfldsA~ 141 (377)
T PF02005_consen 129 -PFGSPAPFLDSAL 141 (377)
T ss_dssp --SS--HHHHHHHH
T ss_pred -CCCCccHhHHHHH
Confidence 6777777765443
No 283
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.58 E-value=0.028 Score=41.04 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=40.6
Q ss_pred eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---C-CcceeecccCc
Q 047897 54 KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---P-QFDLVVANIPY 105 (232)
Q Consensus 54 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~-~~D~Vi~n~p~ 105 (232)
+|+|+||.+++++.+++++...++.+++++++.+=..++. + ++|.++.|+-|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCc
Confidence 6899999999999999999999887789999887655432 2 68999999755
No 284
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.56 E-value=0.0099 Score=48.25 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--C
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--Q 95 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~ 95 (232)
.++.+++..+ .+..++|+|||.|-.+.. .+...++|.|++..++..++..- ...+..+|++..+.. +
T Consensus 35 ~v~qfl~~~~--~gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~~~-------~~~~~~ad~l~~p~~~~s 103 (293)
T KOG1331|consen 35 MVRQFLDSQP--TGSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKRSG-------GDNVCRADALKLPFREES 103 (293)
T ss_pred HHHHHHhccC--CcceeeecccCCcccCcC--CCcceeeecchhhhhccccccCC-------CceeehhhhhcCCCCCCc
Confidence 4455555553 478899999999975532 25678999999999888776532 126788999998875 7
Q ss_pred cceeec
Q 047897 96 FDLVVA 101 (232)
Q Consensus 96 ~D~Vi~ 101 (232)
||..++
T Consensus 104 ~d~~ls 109 (293)
T KOG1331|consen 104 FDAALS 109 (293)
T ss_pred cccchh
Confidence 887765
No 285
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=95.53 E-value=0.076 Score=37.92 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897 17 RVLDSIVRKSSINPDDTVLEIGPGTGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP- 94 (232)
Q Consensus 17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~- 94 (232)
++++.+.+.. ..++++|+|-|.=. .+..|.+.+..|+++|+++. .+. ..+.++..|+.+.+.+
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~i 67 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEI 67 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHH
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-----cCcceeeecccCCCHHH
Confidence 3455666554 34499999999876 44445557899999999997 221 2467899999987654
Q ss_pred --Ccceeec-ccCcccchHH
Q 047897 95 --QFDLVVA-NIPYGISSPL 111 (232)
Q Consensus 95 --~~D~Vi~-n~p~~~~~~~ 111 (232)
..|+|.+ ++|--...++
T Consensus 68 Y~~a~lIYSiRPP~El~~~i 87 (127)
T PF03686_consen 68 YEGADLIYSIRPPPELQPPI 87 (127)
T ss_dssp HTTEEEEEEES--TTSHHHH
T ss_pred hcCCcEEEEeCCChHHhHHH
Confidence 5688887 6664444333
No 286
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.22 E-value=0.039 Score=46.99 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeec
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVA 101 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~ 101 (232)
..++..++|+|||.|..+..+.. ....++|++.++..+..+.......++..+..++.+|+.+.+++ .||.+-+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ 184 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRF 184 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEE
Confidence 45677899999999999999988 67999999999999988888887777766677799999988776 6786554
No 287
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.95 E-value=0.24 Score=37.22 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=59.5
Q ss_pred CcccccCCHHHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHH-HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE
Q 047897 8 KGQHILTNQRVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKL-LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84 (232)
Q Consensus 8 ~gq~fl~~~~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 84 (232)
+.|-|.. ++.++.+++.+.- .++.+|+=|||=+-.....- .....+++..|+|..+... + ++ .|+
T Consensus 2 lsQfwYs-~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~--~~-~F~ 69 (162)
T PF10237_consen 2 LSQFWYS-DETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------G--GD-EFV 69 (162)
T ss_pred ccccccC-HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------C--Cc-ceE
Confidence 4564554 6777777765532 35678999998887655554 2256899999999865432 2 23 455
Q ss_pred EcCCCCC---C---CCCcceeecccCcccchHHH
Q 047897 85 SKDALKT---E---FPQFDLVVANIPYGISSPLV 112 (232)
Q Consensus 85 ~~D~~~~---~---~~~~D~Vi~n~p~~~~~~~l 112 (232)
.-|.... + ..++|+|+++||| .+.+.+
T Consensus 70 fyD~~~p~~~~~~l~~~~d~vv~DPPF-l~~ec~ 102 (162)
T PF10237_consen 70 FYDYNEPEELPEELKGKFDVVVIDPPF-LSEECL 102 (162)
T ss_pred ECCCCChhhhhhhcCCCceEEEECCCC-CCHHHH
Confidence 5555432 1 1379999999999 555544
No 288
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.92 E-value=0.2 Score=41.36 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=52.0
Q ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS 75 (232)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~ 75 (232)
+..+.++++.. --.+++.|||.-+|+|..+.+....+.+.+|+|+++..++.+.++....
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 45677777776 4568999999999999999998889999999999999999999998653
No 289
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.77 E-value=0.048 Score=46.30 Aligned_cols=89 Identities=21% Similarity=0.315 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHh-------hcCC-CccEEE
Q 047897 14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAA-------DSGF-HDRLNV 83 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~~~~ 83 (232)
+.++-+..+++.+++.+++...|+|.|-|.+...++. ....-+|+|+.....+.+..+.. -.|- +..++.
T Consensus 176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 4467778888999999999999999999999988887 34677899987654443333221 1232 246899
Q ss_pred EEcCCCCCCC-----CCcceeecc
Q 047897 84 ISKDALKTEF-----PQFDLVVAN 102 (232)
Q Consensus 84 ~~~D~~~~~~-----~~~D~Vi~n 102 (232)
+++++.+... ...++|+.|
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vN 279 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVN 279 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEe
Confidence 9999987643 245666664
No 290
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.63 E-value=0.14 Score=45.25 Aligned_cols=86 Identities=23% Similarity=0.393 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCC-C--CCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897 17 RVLDSIVRKSSIN-P--DDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87 (232)
Q Consensus 17 ~~~~~i~~~~~~~-~--~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D 87 (232)
.+.+.+.+...-. . -..|+=+|.|.|-+..+.++ +.-+++++|.+|.++-.+... .-...+.+++++.+|
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~D 429 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSD 429 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEecc
Confidence 3445555543221 1 33578899999988777665 346889999999988776552 222344789999999
Q ss_pred CCCCCCC--Ccceeeccc
Q 047897 88 ALKTEFP--QFDLVVANI 103 (232)
Q Consensus 88 ~~~~~~~--~~D~Vi~n~ 103 (232)
..+++.+ +.|++++-+
T Consensus 430 MR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 430 MRKWNAPREQADIIVSEL 447 (649)
T ss_pred ccccCCchhhccchHHHh
Confidence 9998753 789988754
No 291
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.54 E-value=0.34 Score=39.55 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHH
Q 047897 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNR 70 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~ 70 (232)
.+.+||=.|||.|.++..++..+..+.|.|.|--|+-..+-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence 35689999999999999999999999999999988655443
No 292
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.43 E-value=0.2 Score=39.16 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=65.0
Q ss_pred cccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccH--hHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEE
Q 047897 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGN--LTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLN 82 (232)
Q Consensus 9 gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~--~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 82 (232)
++++- .|.+.+.|..++.-..-..++|+.|+-|. .|..|+. -+.++++|-.+++-....++.+...++.+-++
T Consensus 21 c~~~~-ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vE 99 (218)
T PF07279_consen 21 CKKFK-EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVE 99 (218)
T ss_pred hhhcC-CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccce
Confidence 44443 47788888877765566689999766442 3444433 57899999999998888888888777755579
Q ss_pred EEEcCCCC-C--CCCCcceeecc
Q 047897 83 VISKDALK-T--EFPQFDLVVAN 102 (232)
Q Consensus 83 ~~~~D~~~-~--~~~~~D~Vi~n 102 (232)
|+.+|..+ . .+...|.++.+
T Consensus 100 fvvg~~~e~~~~~~~~iDF~vVD 122 (218)
T PF07279_consen 100 FVVGEAPEEVMPGLKGIDFVVVD 122 (218)
T ss_pred EEecCCHHHHHhhccCCCEEEEe
Confidence 99998543 2 23467877654
No 293
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.13 E-value=0.13 Score=40.97 Aligned_cols=89 Identities=20% Similarity=0.246 Sum_probs=60.7
Q ss_pred HHHHHHH---HhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 17 RVLDSIV---RKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 17 ~~~~~i~---~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
++++.|+ +.+-++++.+||=+|+++|.....+.+ +..-|+|||.++..-..+-..+... .|+--+..|+..
T Consensus 140 KLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArh 216 (317)
T KOG1596|consen 140 KLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARH 216 (317)
T ss_pred HHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCC
Confidence 4555554 345578999999999999998888887 5678999999875433332222221 577788888864
Q ss_pred CC-----CCCcceeecccCcccc
Q 047897 91 TE-----FPQFDLVVANIPYGIS 108 (232)
Q Consensus 91 ~~-----~~~~D~Vi~n~p~~~~ 108 (232)
.. .+-.|+|+++++-...
T Consensus 217 P~KYRmlVgmVDvIFaDvaqpdq 239 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVAQPDQ 239 (317)
T ss_pred chheeeeeeeEEEEeccCCCchh
Confidence 32 1246999998764433
No 294
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=94.01 E-value=0.2 Score=40.70 Aligned_cols=78 Identities=13% Similarity=0.293 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-c------CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-V------SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ 88 (232)
..++..|.+.--+.++..++|.|||.|.++..++. . ...++.||....-. .+...+........++=+..|+
T Consensus 4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI 82 (259)
T PF05206_consen 4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDI 82 (259)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEe
Confidence 34566665554456777899999999999999988 2 35889999865332 2223333222112477778888
Q ss_pred CCCCCC
Q 047897 89 LKTEFP 94 (232)
Q Consensus 89 ~~~~~~ 94 (232)
.++++.
T Consensus 83 ~dl~l~ 88 (259)
T PF05206_consen 83 KDLDLS 88 (259)
T ss_pred eccchh
Confidence 887654
No 295
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.92 E-value=0.14 Score=35.81 Aligned_cols=58 Identities=29% Similarity=0.286 Sum_probs=40.7
Q ss_pred CCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeecccC
Q 047897 39 PGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVANIP 104 (232)
Q Consensus 39 ~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n~p 104 (232)
||.|.++..+++ .+.+|+.+|.|++.++.+++. .+.++.||+.+.. ..+.+.|++..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 566777777776 345899999999998777654 2679999998753 236677776544
No 296
>PTZ00357 methyltransferase; Provisional
Probab=93.90 E-value=0.29 Score=44.88 Aligned_cols=71 Identities=27% Similarity=0.342 Sum_probs=49.8
Q ss_pred EEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHh-hcCC-------CccEEEEEcCCCCCCCC----
Q 047897 33 TVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAA-DSGF-------HDRLNVISKDALKTEFP---- 94 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~-~~~~-------~~~~~~~~~D~~~~~~~---- 94 (232)
.|+=+|+|.|-+....++ ...+|++||.++..+.....+.. ...+ .++++++.+|...+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999988777666 23589999999765444444431 1122 24699999999987432
Q ss_pred ---------Ccceeeccc
Q 047897 95 ---------QFDLVVANI 103 (232)
Q Consensus 95 ---------~~D~Vi~n~ 103 (232)
.+|+||+-+
T Consensus 783 s~~~P~~~gKaDIVVSEL 800 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSEL 800 (1072)
T ss_pred cccccccccccceehHhh
Confidence 589999854
No 297
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.88 E-value=0.1 Score=40.85 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=39.4
Q ss_pred CEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-----CcceeecccC
Q 047897 32 DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-----QFDLVVANIP 104 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-----~~D~Vi~n~p 104 (232)
-++|||||=+......-. .--.|+.||+++. .-.+.+.|+++.|.+ .||+|.+.+.
T Consensus 53 lrlLEVGals~~N~~s~~-~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS-GWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred ceEEeecccCCCCccccc-CceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 589999987655443322 2345999999772 245788999987653 6999888654
No 298
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.85 E-value=0.33 Score=34.05 Aligned_cols=69 Identities=26% Similarity=0.365 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-- 94 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-- 94 (232)
++..+.+.. ...+|+|+|-|.=. .+..|.+++..|+++|+.+. +.. ..+.++..|+++.+..
T Consensus 4 ~a~~iAre~---~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-----~g~~~v~DDitnP~~~iY 68 (129)
T COG1255 4 VAEYIAREN---ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-----EGLRFVVDDITNPNISIY 68 (129)
T ss_pred HHHHHHHHh---cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-----ccceEEEccCCCccHHHh
Confidence 344454443 23489999988765 45556668899999999886 221 3488999999988765
Q ss_pred -Ccceeec
Q 047897 95 -QFDLVVA 101 (232)
Q Consensus 95 -~~D~Vi~ 101 (232)
..|+|.+
T Consensus 69 ~~A~lIYS 76 (129)
T COG1255 69 EGADLIYS 76 (129)
T ss_pred hCccceee
Confidence 5677876
No 299
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.72 E-value=0.33 Score=41.12 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=63.0
Q ss_pred CCEEEEEcCCccHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCc
Q 047897 31 DDTVLEIGPGTGNLTLKLLE-VSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPY 105 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~ 105 (232)
..+|+|.=+|+|.=+...+. .+. +|+.-|++|.+++..++|+..+.. .+..+++.|+..+-. ..||+|=.+ ||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiD-PF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDID-PF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecC-CC
Confidence 56899999999998887776 333 899999999999999999998732 467778888865432 256665544 67
Q ss_pred ccchHHHHHHh
Q 047897 106 GISSPLVAKLV 116 (232)
Q Consensus 106 ~~~~~~l~~~~ 116 (232)
+...|.+...+
T Consensus 131 GSPaPFlDaA~ 141 (380)
T COG1867 131 GSPAPFLDAAL 141 (380)
T ss_pred CCCchHHHHHH
Confidence 77777665444
No 300
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.45 E-value=0.3 Score=42.01 Aligned_cols=50 Identities=30% Similarity=0.412 Sum_probs=40.5
Q ss_pred HhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHh
Q 047897 24 RKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAA 73 (232)
Q Consensus 24 ~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~ 73 (232)
+.+++.++++||-|.+|-......+.+...+|++||+++.....++-+..
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 45677899999999987777666677788999999999988877665554
No 301
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.37 E-value=0.31 Score=41.12 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=50.2
Q ss_pred hcCCCCCCEEEEEcCC-ccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC-CCCCC--CCCccee
Q 047897 25 KSSINPDDTVLEIGPG-TGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD-ALKTE--FPQFDLV 99 (232)
Q Consensus 25 ~~~~~~~~~vLDiG~G-~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D-~~~~~--~~~~D~V 99 (232)
..+..+|+.|+=+|+| .|.++..+++ .+.+|+++|.+++-.+.|++.-.. .++... ..... .+.+|.|
T Consensus 161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 161 KANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhHhhCcEE
Confidence 3567789999888886 4467777777 789999999999998888877432 233322 11111 1138988
Q ss_pred ecccC
Q 047897 100 VANIP 104 (232)
Q Consensus 100 i~n~p 104 (232)
+...|
T Consensus 234 i~tv~ 238 (339)
T COG1064 234 IDTVG 238 (339)
T ss_pred EECCC
Confidence 87655
No 302
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=93.29 E-value=0.19 Score=40.49 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD 74 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 74 (232)
..++..|.+.++..+..+++|+-||+|..+..+...+.+|+.-|+++..+...+..+..
T Consensus 6 ~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 6 RKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHhc
Confidence 45677788877643678999999999999999877889999999999988887755543
No 303
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.42 E-value=1.5 Score=36.17 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.|..||=-|.|.|. ++..+++++++++..|++.+..+...+..+..| ++....+|..+.+ .+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 57889999999884 777888889999999999998888888877664 5888999998753 23
Q ss_pred Ccceeeccc-------CcccchHHHHHHhc
Q 047897 95 QFDLVVANI-------PYGISSPLVAKLVY 117 (232)
Q Consensus 95 ~~D~Vi~n~-------p~~~~~~~l~~~~~ 117 (232)
..|++|.|- -++.+++.+.+.++
T Consensus 114 ~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~ 143 (300)
T KOG1201|consen 114 DVDILVNNAGIVTGKKLLDCSDEEIQKTFD 143 (300)
T ss_pred CceEEEeccccccCCCccCCCHHHHHHHHH
Confidence 567888762 23444555555443
No 304
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.28 E-value=0.072 Score=46.53 Aligned_cols=73 Identities=26% Similarity=0.259 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC---------CCCCcce
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT---------EFPQFDL 98 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~---------~~~~~D~ 98 (232)
.+..+|=+|.|.|.+...+.. ...+++++|+||.+++.+++++....- .+..+.-.|.+++ ....||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 345789999999999988766 458999999999999999999854332 2466666676654 1126898
Q ss_pred eeccc
Q 047897 99 VVANI 103 (232)
Q Consensus 99 Vi~n~ 103 (232)
++.++
T Consensus 374 l~~dv 378 (482)
T KOG2352|consen 374 LMVDV 378 (482)
T ss_pred EEEEC
Confidence 88764
No 305
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.99 E-value=0.8 Score=39.44 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=58.1
Q ss_pred CEEEEEcCCccHhHHHHHh----cC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----CCcceeec
Q 047897 32 DTVLEIGPGTGNLTLKLLE----VS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----PQFDLVVA 101 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~----~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~D~Vi~ 101 (232)
.+||=||| |..+...+. .+ .+|+..|.+.+-++.+..... ++++....|+.+.+. ..+|+||+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEE
Confidence 46888999 444444443 44 799999999887777665542 368899999988742 36799999
Q ss_pred ccCcccchHHHHHHhcCC
Q 047897 102 NIPYGISSPLVAKLVYGT 119 (232)
Q Consensus 102 n~p~~~~~~~l~~~~~~~ 119 (232)
-.|++....++...+...
T Consensus 75 ~~p~~~~~~i~ka~i~~g 92 (389)
T COG1748 75 AAPPFVDLTILKACIKTG 92 (389)
T ss_pred eCCchhhHHHHHHHHHhC
Confidence 888888777765555433
No 306
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.95 E-value=0.7 Score=37.47 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=54.9
Q ss_pred CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-C-CcceeecccCc
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-P-QFDLVVANIPY 105 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~-~~D~Vi~n~p~ 105 (232)
+.++....|+|+-+|+.|-.+.+++-.|++||--+ |. +.+-.. +.++-...|..++.. . +.|..+|++.-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-ma----~sL~dt---g~v~h~r~DGfk~~P~r~~idWmVCDmVE 280 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-MA----QSLMDT---GQVTHLREDGFKFRPTRSNIDWMVCDMVE 280 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcceEEEEeccch-hh----hhhhcc---cceeeeeccCcccccCCCCCceEEeehhc
Confidence 45788999999999999999999999999999543 32 222222 568889999988754 2 68999998743
Q ss_pred c
Q 047897 106 G 106 (232)
Q Consensus 106 ~ 106 (232)
.
T Consensus 281 k 281 (358)
T COG2933 281 K 281 (358)
T ss_pred C
Confidence 3
No 307
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=91.64 E-value=0.16 Score=41.44 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=36.5
Q ss_pred HHHHHHHHHhc--CC-CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHH
Q 047897 16 QRVLDSIVRKS--SI-NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMV 65 (232)
Q Consensus 16 ~~~~~~i~~~~--~~-~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~ 65 (232)
-.++..+.+.+ .. -.+++|||+|||+|.....+...+ ..+...|.+.+.+
T Consensus 99 ~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 99 VDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred HHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 34555555443 21 357899999999999888877754 8888999888776
No 308
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=91.60 E-value=0.49 Score=35.03 Aligned_cols=53 Identities=23% Similarity=0.294 Sum_probs=31.1
Q ss_pred EEcCCcc--HhHHHHH--h--cCCeEEEEEcCHHHHHHHHHH--HhhcCCCccEEEEEcCC
Q 047897 36 EIGPGTG--NLTLKLL--E--VSKKVHAIEIDERMVEILNRR--AADSGFHDRLNVISKDA 88 (232)
Q Consensus 36 DiG~G~G--~~t~~l~--~--~~~~v~~vD~~~~~~~~a~~~--~~~~~~~~~~~~~~~D~ 88 (232)
|||++.| ..+..++ . ...+|+++|.++..++.++++ +......+.+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6655543 2 468999999999999999999 44332212355554433
No 309
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.53 E-value=0.6 Score=40.98 Aligned_cols=71 Identities=23% Similarity=0.454 Sum_probs=54.6
Q ss_pred CCCC-EEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeec
Q 047897 29 NPDD-TVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVA 101 (232)
Q Consensus 29 ~~~~-~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~ 101 (232)
.+.+ ++|.+|||.-.++..+.+.+ ..++.+|+|+-.++.+........ +-..+...|+....+ ++||+|+-
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--~~~~~~~~d~~~l~fedESFdiVId 120 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--PEMQMVEMDMDQLVFEDESFDIVID 120 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--cceEEEEecchhccCCCcceeEEEe
Confidence 3455 89999999999999998854 689999999998888776654222 347778888877655 48888875
No 310
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.96 E-value=0.7 Score=38.56 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=39.4
Q ss_pred HHhcCCCCCCEEEEEcCCc-cHhHHHHHh--cCCeEEEEEcCHHHHHHHHH
Q 047897 23 VRKSSINPDDTVLEIGPGT-GNLTLKLLE--VSKKVHAIEIDERMVEILNR 70 (232)
Q Consensus 23 ~~~~~~~~~~~vLDiG~G~-G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~ 70 (232)
....+.+.|.+||=+|+|+ |.++...++ ...+|+.+|+++..++.|++
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3456778899999999997 555655666 46899999999999999998
No 311
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=90.86 E-value=0.7 Score=35.65 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=52.0
Q ss_pred CcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh----cC--CeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897 8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE----VS--KKVHAIEIDERMVEILNRRAADSGFHDRL 81 (232)
Q Consensus 8 ~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~----~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 81 (232)
.|...+.++.-+-.+-+.+=-.+.+.|+|+|.--|+-+...++ .+ .+|+++|+|-.-++.+.... +++
T Consensus 47 mG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------p~i 120 (237)
T COG3510 47 MGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------PDI 120 (237)
T ss_pred ecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------CCe
Confidence 3555555555444444443223566899999999987777766 23 78999999865543322221 689
Q ss_pred EEEEcCCCCCC
Q 047897 82 NVISKDALKTE 92 (232)
Q Consensus 82 ~~~~~D~~~~~ 92 (232)
.+++|+..+..
T Consensus 121 ~f~egss~dpa 131 (237)
T COG3510 121 LFIEGSSTDPA 131 (237)
T ss_pred EEEeCCCCCHH
Confidence 99999987763
No 312
>PRK05867 short chain dehydrogenase; Provisional
Probab=90.69 E-value=2 Score=34.30 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+++.++...+.+...+ .++.++.+|+.+.. ++
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46788988876552 455555578999999999877776666655444 46888899987642 13
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.++.|..
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 5788887753
No 313
>PRK07454 short chain dehydrogenase; Provisional
Probab=90.65 E-value=2.8 Score=33.08 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
.+.++|=.|+ +|.++..++ +.+.+|++++.++.-.+...+.....+ .++.++.+|+.+.. .
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3457788885 555544444 478899999998876555544444332 46889999998753 1
Q ss_pred CCcceeecccC
Q 047897 94 PQFDLVVANIP 104 (232)
Q Consensus 94 ~~~D~Vi~n~p 104 (232)
...|.++.+.-
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 24688887653
No 314
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.63 E-value=2.6 Score=33.76 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+++..+...+.+...+...++.++.+|+.+.. ++
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 35678888875442 4444555789999999988777666666544212246889999987652 12
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|.+|.|.
T Consensus 86 ~id~li~~a 94 (260)
T PRK07063 86 PLDVLVNNA 94 (260)
T ss_pred CCcEEEECC
Confidence 578888764
No 315
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.32 E-value=1.1 Score=41.19 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=43.4
Q ss_pred EEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeecc
Q 047897 33 TVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVAN 102 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n 102 (232)
.|+=+| .|.++..+++ .+.+++.+|.|++.++.+++ . ...++.||+.+.+ .++.|.+++.
T Consensus 402 ~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 402 QVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 455455 5555555544 67899999999999887764 2 2668999998753 3367777775
Q ss_pred cCc
Q 047897 103 IPY 105 (232)
Q Consensus 103 ~p~ 105 (232)
.+-
T Consensus 472 ~~d 474 (601)
T PRK03659 472 CNE 474 (601)
T ss_pred eCC
Confidence 543
No 316
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=89.81 E-value=0.36 Score=38.83 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=46.8
Q ss_pred EEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-----C-CCCcceeecccCcccc
Q 047897 35 LEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-----E-FPQFDLVVANIPYGIS 108 (232)
Q Consensus 35 LDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-----~-~~~~D~Vi~n~p~~~~ 108 (232)
+..-+|+-.++..+++...+.+.+|+.+.-.+.+++++... .++.+.+.|..+. | .+.=-+|+.++||-..
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~ 138 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK 138 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc
Confidence 78999999999999998899999999999999999888653 5899999998763 2 2233589999999988
Q ss_pred hHH
Q 047897 109 SPL 111 (232)
Q Consensus 109 ~~~ 111 (232)
++.
T Consensus 139 ~dy 141 (245)
T PF04378_consen 139 DDY 141 (245)
T ss_dssp THH
T ss_pred hHH
Confidence 653
No 317
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.71 E-value=3 Score=34.38 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=47.9
Q ss_pred CCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897 31 DDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ 95 (232)
Q Consensus 31 ~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~ 95 (232)
+.++|=.|++.|. ++..+++.+.+|++++.+++.++...+.....+ .++.++.+|+.+.. .+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678878865442 334444578999999999877766655554433 35788999988743 235
Q ss_pred cceeeccc
Q 047897 96 FDLVVANI 103 (232)
Q Consensus 96 ~D~Vi~n~ 103 (232)
.|.++.|.
T Consensus 118 id~li~~A 125 (293)
T PRK05866 118 VDILINNA 125 (293)
T ss_pred CCEEEECC
Confidence 78888764
No 318
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.68 E-value=1.6 Score=39.67 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=43.5
Q ss_pred CEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeec
Q 047897 32 DTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVA 101 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~ 101 (232)
+.++=+||| ..+..+++ .+.+++.+|.|++.++.+++. ....+.||+.+.. .++.|.++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 345555555 45555544 578999999999988877642 3778999998752 336787766
Q ss_pred ccCc
Q 047897 102 NIPY 105 (232)
Q Consensus 102 n~p~ 105 (232)
..+-
T Consensus 488 ~~~~ 491 (558)
T PRK10669 488 TIPN 491 (558)
T ss_pred EcCC
Confidence 5543
No 319
>PRK07814 short chain dehydrogenase; Provisional
Probab=89.52 E-value=3 Score=33.56 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
++.++|=.|+ +|.++..+ ++.+.+|++++.+++-.+.+.+.....+ .++.++.+|..+.. .
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4667888885 45455444 4478999999998876665555554333 46888999987653 1
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
+.+|.|+.+.
T Consensus 86 ~~id~vi~~A 95 (263)
T PRK07814 86 GRLDIVVNNV 95 (263)
T ss_pred CCCCEEEECC
Confidence 2568888764
No 320
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.28 E-value=1.3 Score=38.87 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897 15 NQRVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88 (232)
Q Consensus 15 ~~~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ 88 (232)
++.-++.+.+.+.- ....+++=+|+ |.++..+++ .+..|+.+|.|++.++.+++.. .++.++.||+
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~ 284 (453)
T PRK09496 213 AREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDG 284 (453)
T ss_pred CHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCC
Confidence 34445555544431 22456777776 555555555 5789999999999888776653 3467899999
Q ss_pred CCC------CCCCcceeecccC
Q 047897 89 LKT------EFPQFDLVVANIP 104 (232)
Q Consensus 89 ~~~------~~~~~D~Vi~n~p 104 (232)
.+. .....|.|++-.+
T Consensus 285 ~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 285 TDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCHHHHHhcCCccCCEEEECCC
Confidence 754 2336777776544
No 321
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=89.20 E-value=0.68 Score=39.82 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=17.4
Q ss_pred CCEEEEEcCCccHhHHHHHh
Q 047897 31 DDTVLEIGPGTGNLTLKLLE 50 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~ 50 (232)
.-.|+|+|||+|..|..+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 45799999999999988875
No 322
>PRK07035 short chain dehydrogenase; Provisional
Probab=89.01 E-value=4 Score=32.43 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|++++.++.-.+...+.+...+ .++.++..|..+.. .+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35678888877552 444555578899999998776666555554433 35778888887652 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
+.|.++.+..
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 4788886653
No 323
>PRK07062 short chain dehydrogenase; Provisional
Probab=88.89 E-value=4 Score=32.74 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+..+|=.|++.|. ++..+++.+.+|++++.+++-++.+.+.+.......++.++.+|+.+.. +.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 46688888876552 4455555789999999998766665555543321136778889987752 23
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.++.|.-
T Consensus 87 ~id~li~~Ag 96 (265)
T PRK07062 87 GVDMLVNNAG 96 (265)
T ss_pred CCCEEEECCC
Confidence 5688887753
No 324
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.64 E-value=4.1 Score=33.13 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+++-++.+.+.+...+ .++.++.+|+.+.. .+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 45678877765442 444445578899999998876665555554433 35888999987642 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|++|.|.-
T Consensus 83 ~id~li~nAg 92 (275)
T PRK05876 83 HVDVVFSNAG 92 (275)
T ss_pred CCCEEEECCC
Confidence 4688887753
No 325
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.51 E-value=3.9 Score=32.96 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
++.++|=.|. +|.++.. +++.+.+|++++.+++-.+...+.+...+ .++.++.+|+.+.. .
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4567887775 4444444 44478899999998876655544444333 35778899987642 1
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
...|.+|.|.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 2468888764
No 326
>PRK08251 short chain dehydrogenase; Provisional
Probab=88.44 E-value=4.5 Score=31.98 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=46.7
Q ss_pred CEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897 32 DTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ 95 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~ 95 (232)
.++|=.|+ +|.++..+++ .+.+|+.++.++...+.....+.......++.++.+|+.+.. ++.
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46777774 5555555554 678999999988776665555443211246889999998752 124
Q ss_pred cceeeccc
Q 047897 96 FDLVVANI 103 (232)
Q Consensus 96 ~D~Vi~n~ 103 (232)
.|.++.|.
T Consensus 82 id~vi~~a 89 (248)
T PRK08251 82 LDRVIVNA 89 (248)
T ss_pred CCEEEECC
Confidence 68888764
No 327
>PRK07890 short chain dehydrogenase; Provisional
Probab=88.37 E-value=3.8 Score=32.63 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|++++.++.-.+.+.+.+...+ .++.++..|+.+.. ++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 45678877764442 444455578999999998876666655554433 46889999987642 13
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|.|+.|.
T Consensus 82 ~~d~vi~~a 90 (258)
T PRK07890 82 RVDALVNNA 90 (258)
T ss_pred CccEEEECC
Confidence 568888765
No 328
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=88.33 E-value=3.6 Score=32.60 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=45.5
Q ss_pred EEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCc
Q 047897 33 TVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQF 96 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~ 96 (232)
++|=.| |+|.++..+++ .+.+|++++.+++..+.+.......+ .++.++.+|+.+.. ....
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 456566 55666666554 67899999998876666555544333 46889999998753 1246
Q ss_pred ceeeccc
Q 047897 97 DLVVANI 103 (232)
Q Consensus 97 D~Vi~n~ 103 (232)
|.|+.+.
T Consensus 80 d~vi~~a 86 (255)
T TIGR01963 80 DILVNNA 86 (255)
T ss_pred CEEEECC
Confidence 8887754
No 329
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.24 E-value=3.5 Score=32.77 Aligned_cols=66 Identities=27% Similarity=0.285 Sum_probs=42.3
Q ss_pred EEEEEcCCcc--HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeecccC
Q 047897 33 TVLEIGPGTG--NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVANIP 104 (232)
Q Consensus 33 ~vLDiG~G~G--~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n~p 104 (232)
+++=+|||.= .++..|.+.+..|+++|.|++.++.....- .....+++|+.+.. ...+|.+++...
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~------~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE------LDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh------cceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 3555666642 233444447889999999998876632211 23788999998753 347787776443
No 330
>PRK05854 short chain dehydrogenase; Provisional
Probab=88.23 E-value=4.8 Score=33.51 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..|++.+.+|+.+..+.+-.+.+.+.+....-..++.++.+|+.+.. .+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 46678877876553 4444555789999999887766555554433221136889999997753 12
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|++|.|.
T Consensus 93 ~iD~li~nA 101 (313)
T PRK05854 93 PIHLLINNA 101 (313)
T ss_pred CccEEEECC
Confidence 578888774
No 331
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=88.06 E-value=0.68 Score=35.83 Aligned_cols=83 Identities=27% Similarity=0.323 Sum_probs=48.8
Q ss_pred HHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHH------HHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897 23 VRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMV------EILNRRAADSGFHDRLNVISKDALKTEF 93 (232)
Q Consensus 23 ~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~------~~a~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (232)
+...+++++.+|+|+-+|.|.+|..+.. ....|+++-..+... ...+....+... .|.+.+-.+...+..
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~~ 119 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALGA 119 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccCC
Confidence 3345678999999999999999999987 335777775443211 111111111122 456666666555543
Q ss_pred C-CcceeecccCcc
Q 047897 94 P-QFDLVVANIPYG 106 (232)
Q Consensus 94 ~-~~D~Vi~n~p~~ 106 (232)
+ ..|++..+.-|+
T Consensus 120 pq~~d~~~~~~~yh 133 (238)
T COG4798 120 PQKLDLVPTAQNYH 133 (238)
T ss_pred CCcccccccchhhh
Confidence 2 556666654443
No 332
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=87.92 E-value=3.2 Score=34.49 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----CCcceee
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----PQFDLVV 100 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~D~Vi 100 (232)
.+.+||=.| |+|.++..+++ .+.+|+++..++...+.........+...+++++.+|+.+... ...|.|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 456788777 56776666655 6788988877765433322222211222468899999987642 2468887
Q ss_pred ccc
Q 047897 101 ANI 103 (232)
Q Consensus 101 ~n~ 103 (232)
.+.
T Consensus 83 h~A 85 (325)
T PLN02989 83 HTA 85 (325)
T ss_pred EeC
Confidence 654
No 333
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=87.83 E-value=5.3 Score=31.63 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 29 NPDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.++.++|=.|+ +|.++..++ +.+.+|++++.+++-.+...+.+...+. .++.++.+|+...+
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHH
Confidence 36778888885 555555444 4678999999998776666555544332 35778888875321
Q ss_pred --CCCcceeeccc
Q 047897 93 --FPQFDLVVANI 103 (232)
Q Consensus 93 --~~~~D~Vi~n~ 103 (232)
.+..|.||.|.
T Consensus 88 ~~~~~id~vi~~A 100 (247)
T PRK08945 88 EQFGRLDGVLHNA 100 (247)
T ss_pred HHhCCCCEEEECC
Confidence 12578888764
No 334
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=87.80 E-value=5 Score=32.25 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+++-++.+.+.....+ .++.++.+|+.+.. ..
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45678888876653 555566678899999998877766666665433 46888999997652 13
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.++.|..
T Consensus 87 ~id~li~~ag 96 (265)
T PRK07097 87 VIDILVNNAG 96 (265)
T ss_pred CCCEEEECCC
Confidence 4788887754
No 335
>PRK07478 short chain dehydrogenase; Provisional
Probab=87.77 E-value=4.8 Score=32.04 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=48.4
Q ss_pred CCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897 31 DDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ 95 (232)
Q Consensus 31 ~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~ 95 (232)
+.++|=.|++.|. ++..+++.+.+|+.++.+++-.+.+.+.+...+ .++.++.+|+.+.. .+.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 5577877765442 444555578899999998877666655555444 46888999987652 125
Q ss_pred cceeecccC
Q 047897 96 FDLVVANIP 104 (232)
Q Consensus 96 ~D~Vi~n~p 104 (232)
.|.+|.|..
T Consensus 84 id~li~~ag 92 (254)
T PRK07478 84 LDIAFNNAG 92 (254)
T ss_pred CCEEEECCC
Confidence 788887653
No 336
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=87.75 E-value=0.8 Score=37.73 Aligned_cols=75 Identities=19% Similarity=0.380 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhc--CC-CccEEEEEcCCCCC----CCCCccee
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADS--GF-HDRLNVISKDALKT----EFPQFDLV 99 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~----~~~~~D~V 99 (232)
...++||=||-|.|...+..+. ....+.-+|+|...++..++.+... |+ .+++.+.-||...+ ...+||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3567899999999999988877 3468999999999999999888653 22 26899999998664 23489999
Q ss_pred eccc
Q 047897 100 VANI 103 (232)
Q Consensus 100 i~n~ 103 (232)
+.+.
T Consensus 200 i~ds 203 (337)
T KOG1562|consen 200 ITDS 203 (337)
T ss_pred EEec
Confidence 9764
No 337
>PRK07774 short chain dehydrogenase; Provisional
Probab=87.33 E-value=4.9 Score=31.81 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897 30 PDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------ 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------ 93 (232)
.+.++|=.| |+|.++..++ +.+.+|++++.++.-.+.........+ .++.++.+|..+...
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 356778777 4455555554 478899999998765555444443322 357788899887531
Q ss_pred CCcceeecccCc
Q 047897 94 PQFDLVVANIPY 105 (232)
Q Consensus 94 ~~~D~Vi~n~p~ 105 (232)
+..|.||.+..+
T Consensus 82 ~~id~vi~~ag~ 93 (250)
T PRK07774 82 GGIDYLVNNAAI 93 (250)
T ss_pred CCCCEEEECCCC
Confidence 257988887543
No 338
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.16 E-value=2.3 Score=36.14 Aligned_cols=46 Identities=22% Similarity=0.415 Sum_probs=36.0
Q ss_pred CCCCCCEEEEEcCCc-cHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHH
Q 047897 27 SINPDDTVLEIGPGT-GNLTLKLLE--VSKKVHAIEIDERMVEILNRRA 72 (232)
Q Consensus 27 ~~~~~~~vLDiG~G~-G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~ 72 (232)
...++++|+=+|||+ |.++..+++ ...+|+++|.+++-++.|++..
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 334555999999998 555566666 3489999999999999998865
No 339
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.15 E-value=2.1 Score=36.74 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=38.1
Q ss_pred hcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHH
Q 047897 25 KSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNRR 71 (232)
Q Consensus 25 ~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~ 71 (232)
...+.++.+||..|||. |..+..+++ .+. ++++++.+++..+.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 44566788999999988 888888887 454 699999999988888775
No 340
>PRK08589 short chain dehydrogenase; Validated
Probab=87.12 E-value=5.3 Score=32.31 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|++++.++. .+...+.+...+ .++.++.+|+.+.. ++
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~-~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEA-VSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHH-HHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 45678878876552 44455557899999999843 333333343333 46888999987652 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.+|.|.-
T Consensus 82 ~id~li~~Ag 91 (272)
T PRK08589 82 RVDVLFNNAG 91 (272)
T ss_pred CcCEEEECCC
Confidence 4688888753
No 341
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=87.08 E-value=0.69 Score=36.41 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHH
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRA 72 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~ 72 (232)
|-+++..++.+.+.++...+|.--|.|..|..+++ ...+++++|.||-+.+.|+-..
T Consensus 29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 66788899999888999999999999999999998 4468899999998877766555
No 342
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=86.86 E-value=5.9 Score=32.04 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+++..+...+.+...+ .++.++.+|..+.. ++
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35677777765442 444455578899999998776655555554433 46888999987652 13
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.+|.|..
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 5788887643
No 343
>PRK07109 short chain dehydrogenase; Provisional
Probab=86.83 E-value=5.7 Score=33.45 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+++-++...+.+...+ .++.++.+|+.+.. +.
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 35577878864442 334445578899999999887776666665544 46888999987752 23
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.+|.|.-
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 5788887653
No 344
>PRK08303 short chain dehydrogenase; Provisional
Probab=86.62 E-value=5.1 Score=33.30 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCH----------HHHHHHHHHHhhcCCCccEEEEEcCCCCCC----
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDE----------RMVEILNRRAADSGFHDRLNVISKDALKTE---- 92 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~----------~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---- 92 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+. +-++.+.+.+...+ .++.++.+|+.+..
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHHHH
Confidence 46788999976662 4445555788999998763 23333334444333 35778899988752
Q ss_pred --------CCCcceeeccc
Q 047897 93 --------FPQFDLVVANI 103 (232)
Q Consensus 93 --------~~~~D~Vi~n~ 103 (232)
++..|++|.|.
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 23578888876
No 345
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.54 E-value=4.1 Score=37.06 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=50.0
Q ss_pred hcCCCCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhc-----CC--CccEEEEEcCCCCCC-
Q 047897 25 KSSINPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADS-----GF--HDRLNVISKDALKTE- 92 (232)
Q Consensus 25 ~~~~~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~-----~~--~~~~~~~~~D~~~~~- 92 (232)
..+...+.+||=.|+ +|.++..+++ .+.+|+++..+.+-.+...+.+... |. ..++.++.+|+.+..
T Consensus 74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 334446777777775 4555555544 6889999998887665444333221 11 135889999998753
Q ss_pred ----CCCcceeecccC
Q 047897 93 ----FPQFDLVVANIP 104 (232)
Q Consensus 93 ----~~~~D~Vi~n~p 104 (232)
+...|+||++.-
T Consensus 153 I~~aLggiDiVVn~AG 168 (576)
T PLN03209 153 IGPALGNASVVICCIG 168 (576)
T ss_pred HHHHhcCCCEEEEccc
Confidence 236788887753
No 346
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=86.36 E-value=2.5 Score=34.02 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=61.0
Q ss_pred EEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-----CC-CCcceeecccCcccc
Q 047897 35 LEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-----EF-PQFDLVVANIPYGIS 108 (232)
Q Consensus 35 LDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-----~~-~~~D~Vi~n~p~~~~ 108 (232)
|.--||+-.++..+++...++.++|..+.=...++.++.. ..++.+..+|.... |. +.=-+|+.++||...
T Consensus 93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~ 169 (279)
T COG2961 93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELK 169 (279)
T ss_pred cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccc
Confidence 8999999999999999889999999999999999999973 26899999998653 22 123579999999877
Q ss_pred hH
Q 047897 109 SP 110 (232)
Q Consensus 109 ~~ 110 (232)
.+
T Consensus 170 ~e 171 (279)
T COG2961 170 DE 171 (279)
T ss_pred cH
Confidence 54
No 347
>PRK07791 short chain dehydrogenase; Provisional
Probab=86.32 E-value=7 Score=31.98 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCH---------HHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDE---------RMVEILNRRAADSGFHDRLNVISKDALKTE----- 92 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~---------~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----- 92 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+. +.++.+.+.+...+ .++.++.+|+.+..
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHHHHH
Confidence 56788888877663 4455556788999988764 43444334443333 45778889987742
Q ss_pred -------CCCcceeeccc
Q 047897 93 -------FPQFDLVVANI 103 (232)
Q Consensus 93 -------~~~~D~Vi~n~ 103 (232)
++..|.+|.|.
T Consensus 83 ~~~~~~~~g~id~lv~nA 100 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNA 100 (286)
T ss_pred HHHHHHhcCCCCEEEECC
Confidence 23578888774
No 348
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.31 E-value=2.7 Score=38.80 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=43.4
Q ss_pred CEEEEEcCCccH--hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeeccc
Q 047897 32 DTVLEIGPGTGN--LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVANI 103 (232)
Q Consensus 32 ~~vLDiG~G~G~--~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n~ 103 (232)
++|+=+|||.=+ ++..+.+.+.+++.+|.|++.++.+++. ...++.||+.+.+ .++.|.+++-.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence 467777776533 2222333678999999999999887652 2668999998763 23667777644
No 349
>PRK07677 short chain dehydrogenase; Provisional
Probab=86.19 E-value=5.8 Score=31.57 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=47.1
Q ss_pred CEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCc
Q 047897 32 DTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQF 96 (232)
Q Consensus 32 ~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~ 96 (232)
.++|=.|++.|. ++..+++.+.+|++++.++...+.+.+.+...+ .++.++.+|..+.. ++..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 467777775542 444455578899999998876666665554433 46889999987642 1356
Q ss_pred ceeeccc
Q 047897 97 DLVVANI 103 (232)
Q Consensus 97 D~Vi~n~ 103 (232)
|.+|.|.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 8888764
No 350
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=86.15 E-value=6.3 Score=31.38 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
++.++|=.|++ |.++.. +++.+.+|+.++.+++.++...+.+...+ .++.++.+|+.+.. .
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46678878854 444444 44478999999999876665555554444 46889999987642 1
Q ss_pred CCcceeecccC
Q 047897 94 PQFDLVVANIP 104 (232)
Q Consensus 94 ~~~D~Vi~n~p 104 (232)
+..|.++.|.-
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 24688887643
No 351
>PRK08862 short chain dehydrogenase; Provisional
Probab=86.12 E-value=5.7 Score=31.35 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+..+|=.|++.|. ++..+++.+.+|+.++.+++.++.+.+.....+ .++..+..|..+.. ++
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 35688888888874 666666689999999999887776666555444 34667777876542 23
Q ss_pred -Ccceeeccc
Q 047897 95 -QFDLVVANI 103 (232)
Q Consensus 95 -~~D~Vi~n~ 103 (232)
..|+++.|.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 578888875
No 352
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=85.86 E-value=2.9 Score=34.57 Aligned_cols=49 Identities=12% Similarity=0.292 Sum_probs=39.4
Q ss_pred cCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh
Q 047897 26 SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD 74 (232)
Q Consensus 26 ~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 74 (232)
+.+..+.+|.-||+|--.....+.+...+|.+||+++..+..-+-++..
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHH
Confidence 3445788999999998878878888889999999999988776665543
No 353
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=85.61 E-value=0.4 Score=42.12 Aligned_cols=85 Identities=26% Similarity=0.354 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------CCcceee
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------PQFDLVV 100 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------~~~D~Vi 100 (232)
++-+|||.=|++|.-+...+. ...+|++-|.++..++..++|.+.++.++.++..++|+..+-. ..||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 456899999999998888877 3578999999999999999999988877778888999865421 3688776
Q ss_pred cccCcccchHHHHHH
Q 047897 101 ANIPYGISSPLVAKL 115 (232)
Q Consensus 101 ~n~p~~~~~~~l~~~ 115 (232)
.+ ||+..++++...
T Consensus 189 LD-PyGs~s~FLDsA 202 (525)
T KOG1253|consen 189 LD-PYGSPSPFLDSA 202 (525)
T ss_pred cC-CCCCccHHHHHH
Confidence 65 788877776443
No 354
>PRK06197 short chain dehydrogenase; Provisional
Probab=85.54 E-value=7.6 Score=32.02 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
.+.+||=.|+ +|.++..+ ++.+.+|+.+..+++-.+.+.+.+.......++.++.+|+.+.. .
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 4667886675 44444444 44788999999887666554444432211146889999998753 1
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
+..|.+|.|.
T Consensus 94 ~~iD~li~nA 103 (306)
T PRK06197 94 PRIDLLINNA 103 (306)
T ss_pred CCCCEEEECC
Confidence 2578888775
No 355
>PRK06139 short chain dehydrogenase; Provisional
Probab=85.46 E-value=6.6 Score=33.07 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+++.++...+.+...+ .++.++.+|+.+.. ..
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45678877775442 444455578999999999887776666665544 45778888987642 13
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|.+|.|.
T Consensus 84 ~iD~lVnnA 92 (330)
T PRK06139 84 RIDVWVNNV 92 (330)
T ss_pred CCCEEEECC
Confidence 578888875
No 356
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=85.28 E-value=5.9 Score=31.61 Aligned_cols=70 Identities=14% Similarity=0.321 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|++++.+.. +.+.+.....+ .++.++.+|+.+.. ++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 46788988876653 44455557899998876542 22333333333 46888999997753 23
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|.++.|.
T Consensus 83 ~iD~lv~~a 91 (251)
T PRK12481 83 HIDILINNA 91 (251)
T ss_pred CCCEEEECC
Confidence 578888774
No 357
>PRK08267 short chain dehydrogenase; Provisional
Probab=85.19 E-value=5.7 Score=31.73 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=44.9
Q ss_pred EEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-------------CCCc
Q 047897 33 TVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-------------FPQF 96 (232)
Q Consensus 33 ~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-------------~~~~ 96 (232)
++|=.|++.| .++..+++.+.+|++++.+++-++.+.+... + .++.++.+|+.+.. ..++
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5677776543 1444455578899999998876665544432 1 46889999998742 2246
Q ss_pred ceeecccC
Q 047897 97 DLVVANIP 104 (232)
Q Consensus 97 D~Vi~n~p 104 (232)
|.|+.|.-
T Consensus 79 d~vi~~ag 86 (260)
T PRK08267 79 DVLFNNAG 86 (260)
T ss_pred CEEEECCC
Confidence 88887653
No 358
>PRK12939 short chain dehydrogenase; Provisional
Probab=85.06 E-value=7 Score=30.83 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------ 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------ 93 (232)
++.++|=.|+ +|.++..+++ .+.+|++++.+++-.+...+.+...+ .++.++.+|+.+...
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567886664 5555555544 68899999988876665555544333 468899999976431
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
...|.|+.+.
T Consensus 83 ~~id~vi~~a 92 (250)
T PRK12939 83 GGLDGLVNNA 92 (250)
T ss_pred CCCCEEEECC
Confidence 3568888764
No 359
>PRK06949 short chain dehydrogenase; Provisional
Probab=84.95 E-value=7.4 Score=30.92 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
.+.++|=.| |+|.++..+++ .+.+|++++.+++.++.....+...+ .++.++.+|+.+.. .
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 467788888 45555555444 67899999999887766666554333 46888999987642 1
Q ss_pred CCcceeecccC
Q 047897 94 PQFDLVVANIP 104 (232)
Q Consensus 94 ~~~D~Vi~n~p 104 (232)
...|.++.+..
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 24688887653
No 360
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=84.91 E-value=0.44 Score=33.06 Aligned_cols=15 Identities=40% Similarity=0.673 Sum_probs=12.9
Q ss_pred CcceeecccCcccch
Q 047897 95 QFDLVVANIPYGISS 109 (232)
Q Consensus 95 ~~D~Vi~n~p~~~~~ 109 (232)
.||+||+||||....
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 489999999998765
No 361
>PRK06172 short chain dehydrogenase; Provisional
Probab=84.86 E-value=7.7 Score=30.79 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|++++.+++-.+.+.+.+...+ .++.++.+|+.+.. ++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 35678888864432 334444478899999999877666555554443 46889999997642 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
.+|.|+.|.-
T Consensus 84 ~id~li~~ag 93 (253)
T PRK06172 84 RLDYAFNNAG 93 (253)
T ss_pred CCCEEEECCC
Confidence 4688887653
No 362
>PRK06720 hypothetical protein; Provisional
Probab=84.43 E-value=13 Score=28.09 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+..+|=.|.|.|. ++..+++.+.+|+.+|.+....+...+.+...+ ..+.++..|..+.. +.
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--GEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677777766543 444555678999999988776655544444333 35777888886542 23
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.++.|..
T Consensus 93 ~iDilVnnAG 102 (169)
T PRK06720 93 RIDMLFQNAG 102 (169)
T ss_pred CCCEEEECCC
Confidence 5688888754
No 363
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=84.30 E-value=7.1 Score=31.27 Aligned_cols=70 Identities=26% Similarity=0.374 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
++.++|=.|++.|. ++..+++.+.+|+.++.+++.++.+.+.. + .++.++.+|+.+.. .+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G--DHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 45678888865442 44445557899999999887665554433 1 45788899987642 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.+|.|..
T Consensus 80 ~id~li~~ag 89 (263)
T PRK06200 80 KLDCFVGNAG 89 (263)
T ss_pred CCCEEEECCC
Confidence 5788887754
No 364
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=84.15 E-value=8.7 Score=30.64 Aligned_cols=72 Identities=22% Similarity=0.247 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
++.++|=.| |+|.++..+++ .+.+|+.++.+++-.+.........+ .++.++.+|+.+.. .
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 456788888 45555555554 68899999998877666665554433 46888999998742 1
Q ss_pred CCcceeecccC
Q 047897 94 PQFDLVVANIP 104 (232)
Q Consensus 94 ~~~D~Vi~n~p 104 (232)
+..|.|+.+..
T Consensus 88 ~~id~vi~~ag 98 (259)
T PRK08213 88 GHVDILVNNAG 98 (259)
T ss_pred CCCCEEEECCC
Confidence 25688887654
No 365
>PRK06125 short chain dehydrogenase; Provisional
Probab=84.02 E-value=11 Score=30.14 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--------CCCcce
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------FPQFDL 98 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~D~ 98 (232)
.+.++|=.|++.|. ++..+++.+.+|++++.+++..+.+.+.+.... ..++.++.+|+.+.. .+..|.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 35678888864442 333444578899999999877666555554321 146888899987642 235788
Q ss_pred eeccc
Q 047897 99 VVANI 103 (232)
Q Consensus 99 Vi~n~ 103 (232)
++.|.
T Consensus 85 lv~~a 89 (259)
T PRK06125 85 LVNNA 89 (259)
T ss_pred EEECC
Confidence 88764
No 366
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=83.98 E-value=11 Score=29.99 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+..+|=.|++.|. ++..+++.+.+|+.++.++...+...+.....+ .++.++.+|+.+.. ++
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 45678888855432 444444478899999998776665555554433 35778889987652 13
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
.+|.++.|..
T Consensus 86 ~id~vi~~ag 95 (254)
T PRK08085 86 PIDVLINNAG 95 (254)
T ss_pred CCCEEEECCC
Confidence 5788888753
No 367
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.77 E-value=9.1 Score=30.45 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
.+.++|=.|+ +|.++..+++ .+.+|++++.++...+.+.+.+...+ .++.++.+|+.+.. .
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4668888885 5555555444 68899999999877666655555433 35888999997742 1
Q ss_pred CCcceeecccC
Q 047897 94 PQFDLVVANIP 104 (232)
Q Consensus 94 ~~~D~Vi~n~p 104 (232)
...|.+|.+..
T Consensus 86 ~~~d~li~~ag 96 (255)
T PRK07523 86 GPIDILVNNAG 96 (255)
T ss_pred CCCCEEEECCC
Confidence 24688887753
No 368
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=83.74 E-value=0.79 Score=41.46 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCH
Q 047897 28 INPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDE 62 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~ 62 (232)
+.++..|||+||.+|+......+ .+.-|+|+|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 35678899999999999988887 467899999866
No 369
>PRK06914 short chain dehydrogenase; Provisional
Probab=83.70 E-value=9.5 Score=30.83 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=46.4
Q ss_pred CCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----------CC
Q 047897 31 DDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----------PQ 95 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~ 95 (232)
+.++|=.|++. .++.. +++.+.+|++++.+++-.+...+.....+...++.++.+|+.+... +.
T Consensus 3 ~k~~lItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASS-GFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 44677777543 43444 4457889999998887665555444433333468899999977431 24
Q ss_pred cceeeccc
Q 047897 96 FDLVVANI 103 (232)
Q Consensus 96 ~D~Vi~n~ 103 (232)
.|.|+.+.
T Consensus 82 id~vv~~a 89 (280)
T PRK06914 82 IDLLVNNA 89 (280)
T ss_pred eeEEEECC
Confidence 68777764
No 370
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.59 E-value=9.1 Score=33.57 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCccHh--HHHHHhcCCeEEEEEcCH-HHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcc
Q 047897 30 PDDTVLEIGPGTGNL--TLKLLEVSKKVHAIEIDE-RMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYG 106 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~--t~~l~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~ 106 (232)
.+.+|+=+|+|..+. +..+++.+..|+++|.+. +.++...+.+... +++++.+|..+.....+|+|+.+.-..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL----GIELVLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCcchhHhhcCCEEEECCCCC
Confidence 356788888877543 333444789999999985 3232222233332 356777777664445789888765444
Q ss_pred cchHHH
Q 047897 107 ISSPLV 112 (232)
Q Consensus 107 ~~~~~l 112 (232)
...+.+
T Consensus 80 ~~~~~~ 85 (450)
T PRK14106 80 LDSPPV 85 (450)
T ss_pred CCCHHH
Confidence 444443
No 371
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.56 E-value=8 Score=31.02 Aligned_cols=71 Identities=10% Similarity=0.196 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCcc-HhH----HHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPGTG-NLT----LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G~G-~~t----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+.++|=.|+++| .++ ..+++.+.+|+.++.+....+.+.+..... +...++.+|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHHHH
Confidence 4678899997652 444 444557889999988865433333333222 23457788887652
Q ss_pred CCCcceeeccc
Q 047897 93 FPQFDLVVANI 103 (232)
Q Consensus 93 ~~~~D~Vi~n~ 103 (232)
+...|+++.|.
T Consensus 86 ~g~ld~lv~nA 96 (258)
T PRK07533 86 WGRLDFLLHSI 96 (258)
T ss_pred cCCCCEEEEcC
Confidence 23578888875
No 372
>PRK08339 short chain dehydrogenase; Provisional
Probab=83.55 E-value=9.6 Score=30.67 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------CCC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----------FPQ 95 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----------~~~ 95 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+++-++.+.+.+.... ..++.++.+|+.+.. ++.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 46678888876553 555566688999999999877666655553321 146888999988752 124
Q ss_pred cceeeccc
Q 047897 96 FDLVVANI 103 (232)
Q Consensus 96 ~D~Vi~n~ 103 (232)
.|+++.|.
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 68888764
No 373
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.87 E-value=11 Score=29.56 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=47.0
Q ss_pred CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+.++|=.|+ +|.++..+++ .+.+|++++.++.-.+.........+ .++.++.+|..+.. ++
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456777874 5666665544 68899999998765554444443333 46889999987653 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.|+.+..
T Consensus 84 ~id~vi~~ag 93 (239)
T PRK07666 84 SIDILINNAG 93 (239)
T ss_pred CccEEEEcCc
Confidence 5688887653
No 374
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=82.66 E-value=1.4 Score=35.84 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCccHhHHH-HHhcCCeEEEEEcCHHHHHHHHHHHhh
Q 047897 30 PDDTVLEIGPGTGNLTLK-LLEVSKKVHAIEIDERMVEILNRRAAD 74 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~-l~~~~~~v~~vD~~~~~~~~a~~~~~~ 74 (232)
+|.++||||||+-..-.. +.+...+++..|..+.-.+..++-++.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~ 101 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRK 101 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCC
Confidence 577999999999654322 223567899999998877765555543
No 375
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.30 E-value=9.6 Score=31.43 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+..|+==||.+|. ++..+++.+.+++-+-...+-++...+.++..+-..++.++.+|+.+.. ++
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 47789999998874 7777777888888777777777776555554443235999999998863 23
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|++|.|--
T Consensus 91 ~vDvLVNNAG 100 (282)
T KOG1205|consen 91 RVDVLVNNAG 100 (282)
T ss_pred CCCEEEecCc
Confidence 5799998843
No 376
>PRK08703 short chain dehydrogenase; Provisional
Probab=82.25 E-value=11 Score=29.51 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
++.++|=.|++ |.++.. +++.+.+|++++.++.-.+...+.+...+. ..+.++..|..+
T Consensus 5 ~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~ 67 (239)
T PRK08703 5 SDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMS 67 (239)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecc
Confidence 45688888864 444444 444788999999998766655555443321 235566777654
No 377
>PRK08265 short chain dehydrogenase; Provisional
Probab=82.09 E-value=10 Score=30.39 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.| .++..+++.+.+|+.++.+++-.+...+.. + .++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3567887885443 244445557889999999876444333322 2 46888999998753 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.++.|..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 4688887753
No 378
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=82.04 E-value=3.6 Score=27.82 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=32.0
Q ss_pred EcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeecccC
Q 047897 37 IGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVANIP 104 (232)
Q Consensus 37 iG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n~p 104 (232)
+-||+|.-|..++. ...++.+...|.+ +++.+.+..+.+. ..+|+|++..+
T Consensus 7 vvCgsG~~TS~m~~---------------~ki~~~l~~~gi~--~~v~~~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 7 VACGGAVATSTMAA---------------EEIKELCQSHNIP--VELIQCRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred EECCCchhHHHHHH---------------HHHHHHHHHCCCe--EEEEEecHHHHhhhcCCCCEEEECCc
Confidence 67899987766642 2344555556653 6777777765543 46787776544
No 379
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=81.99 E-value=10 Score=30.23 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=45.3
Q ss_pred EEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCcc
Q 047897 33 TVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQFD 97 (232)
Q Consensus 33 ~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~D 97 (232)
++|=.|++.|. ++..+++.+.+|+.++.++..++.+.+.+... +++.++.+|+.+.. ++..|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 46667765442 44445557899999999987776665555433 35788899987642 23578
Q ss_pred eeeccc
Q 047897 98 LVVANI 103 (232)
Q Consensus 98 ~Vi~n~ 103 (232)
++|.|.
T Consensus 79 ~li~na 84 (259)
T PRK08340 79 ALVWNA 84 (259)
T ss_pred EEEECC
Confidence 888775
No 380
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.95 E-value=10 Score=29.62 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
.+..+|=+|. +|.++..+++ .+.+|++++.++.......+.+... .++.++.+|+.+.. .
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567888884 5655555544 6789999999887665554444322 35888999987642 1
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
+..|.|+.+.
T Consensus 81 ~~~d~vi~~a 90 (237)
T PRK07326 81 GGLDVLIANA 90 (237)
T ss_pred CCCCEEEECC
Confidence 2467777653
No 381
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.90 E-value=11 Score=30.05 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897 30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------ 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------ 93 (232)
++.++|=.|+ +|.++.. +++.+.+|++++.++...+.+.+.+...+ .++.++.+|+.+...
T Consensus 6 ~~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 6 NGKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3567775555 4444444 44478899999999876666666555443 468889999876531
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
++.|.||.+.
T Consensus 83 ~~~d~vi~~a 92 (262)
T PRK13394 83 GSVDILVSNA 92 (262)
T ss_pred CCCCEEEECC
Confidence 2468888764
No 382
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=81.84 E-value=12 Score=29.79 Aligned_cols=71 Identities=17% Similarity=0.297 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.++...+ ..+.+...+ .++.++.+|+.+.. .+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHE-VAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHH-HHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 35678888865442 45555557889999998864333 233333323 45788899987742 12
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|.++.|.
T Consensus 84 ~id~lv~nA 92 (260)
T PRK12823 84 RIDVLINNV 92 (260)
T ss_pred CCeEEEECC
Confidence 578888775
No 383
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=81.77 E-value=4.7 Score=29.78 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcC
Q 047897 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEID 61 (232)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~ 61 (232)
+..++.........+| -|||+|-|.|..=-.|-+ ++.+++.+|..
T Consensus 15 R~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 15 RDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 4555666666654444 699999999997777777 67899999853
No 384
>PRK06194 hypothetical protein; Provisional
Probab=81.50 E-value=12 Score=30.40 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=46.0
Q ss_pred CCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+.++|=.|+ +|.++.. +++.+.+|+.+|.+.+..+...+.+...+ .++.++.+|+.+.. .+
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 457886664 4444444 44478899999998776655544444333 36888999997642 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.|+.|.-
T Consensus 83 ~id~vi~~Ag 92 (287)
T PRK06194 83 AVHLLFNNAG 92 (287)
T ss_pred CCCEEEECCC
Confidence 4688887753
No 385
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=81.31 E-value=8.8 Score=31.71 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----CCcceeec
Q 047897 31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----PQFDLVVA 101 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~D~Vi~ 101 (232)
+.+||=.| |+|.++..+++ .+.+|+++..++.............+..++++++.+|+.+... ...|.|+.
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 45677666 46777666655 6789999887754322222221111112478999999987531 25687776
Q ss_pred cc
Q 047897 102 NI 103 (232)
Q Consensus 102 n~ 103 (232)
..
T Consensus 83 ~A 84 (322)
T PLN02662 83 TA 84 (322)
T ss_pred eC
Confidence 43
No 386
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.24 E-value=13 Score=29.24 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
++.++|=.|+ +|.++..+ ++.+.+|+.++.++.-.+.+.+.....+ .++.++..|+.+.. .
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4667888885 34444444 3467899999999876665555554433 46888999986632 1
Q ss_pred CCcceeecccC
Q 047897 94 PQFDLVVANIP 104 (232)
Q Consensus 94 ~~~D~Vi~n~p 104 (232)
..+|.||.|..
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 24688887753
No 387
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.12 E-value=1.2 Score=37.71 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=38.7
Q ss_pred CCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897 31 DDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~ 89 (232)
..++||+|.|+|.-..++.. ....++.+|.++.+-++.......... .......+|+.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt 174 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVT 174 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccc
Confidence 45799999999987766655 346788899998877776666554433 23334444443
No 388
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=81.07 E-value=5.9 Score=33.52 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=16.3
Q ss_pred CCCCEEEEEcCCccHhHHHHHh
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE 50 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~ 50 (232)
...-+|+|+||.+|..|..+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 3455899999999999988776
No 389
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=80.95 E-value=7.5 Score=31.41 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=27.7
Q ss_pred CCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897 31 DDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRR 71 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~ 71 (232)
...|||+|+|+|..+..++. .+..|+.-|.-. .++....+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~ 127 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFN 127 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHh
Confidence 45799999999977777666 567888877643 33333333
No 390
>PRK12829 short chain dehydrogenase; Provisional
Probab=80.90 E-value=13 Score=29.62 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.++.++|=.|++ |.++..+++ .+.+|++++.+++..+...+.... .++.++.+|+.+..
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG----AKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 366789988875 555555444 688999999988766554433321 24688899987643
Q ss_pred CCCcceeecccC
Q 047897 93 FPQFDLVVANIP 104 (232)
Q Consensus 93 ~~~~D~Vi~n~p 104 (232)
....|.|+.+..
T Consensus 84 ~~~~d~vi~~ag 95 (264)
T PRK12829 84 FGGLDVLVNNAG 95 (264)
T ss_pred hCCCCEEEECCC
Confidence 125788887643
No 391
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.83 E-value=6.5 Score=33.53 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=40.0
Q ss_pred CCEEEEEcCCccHhHHHHHh--cCCeEEE---EEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897 31 DDTVLEIGPGTGNLTLKLLE--VSKKVHA---IEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~--~~~~v~~---vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~ 94 (232)
+..++|.|||.|.++..+.. ....++- +|....-...=+....... ..++-+..|+.++.+.
T Consensus 183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~--~vi~R~riDI~dLkL~ 249 (420)
T KOG2811|consen 183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNS--LVIKRIRIDIEDLKLN 249 (420)
T ss_pred cceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCc--chhheeEeeHHhcCcc
Confidence 36899999999999999987 3344444 7776655544333333221 3456677788776544
No 392
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=80.83 E-value=13 Score=29.47 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+++.++.+....+.+...+...+ .++.++.+|+.+.. ..
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46789999965552 444455578899999988777666555554433 45788899987653 12
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
.+|.++.+.
T Consensus 88 ~~d~li~~a 96 (255)
T PRK06113 88 KVDILVNNA 96 (255)
T ss_pred CCCEEEECC
Confidence 468887764
No 393
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=80.58 E-value=7.3 Score=36.20 Aligned_cols=87 Identities=20% Similarity=0.073 Sum_probs=50.4
Q ss_pred CCEEEEEcCCccHhHHHHHh---------c-----CCeEEEEEcCHHH--------------HHHHHHHHhh-----cCC
Q 047897 31 DDTVLEIGPGTGNLTLKLLE---------V-----SKKVHAIEIDERM--------------VEILNRRAAD-----SGF 77 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~---------~-----~~~v~~vD~~~~~--------------~~~a~~~~~~-----~~~ 77 (232)
.-+|+|+|-|+|......++ . .-+++++|.+|-. .+.+++.... .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 45899999999986666553 1 1378999986522 2222222211 121
Q ss_pred ------Cc--cEEEEEcCCCCCCC---CCcceeeccc------CcccchHHHHHHhc
Q 047897 78 ------HD--RLNVISKDALKTEF---PQFDLVVANI------PYGISSPLVAKLVY 117 (232)
Q Consensus 78 ------~~--~~~~~~~D~~~~~~---~~~D~Vi~n~------p~~~~~~~l~~~~~ 117 (232)
.+ ++++..||+.+.-. ..+|+++.+. |--|+.+++..+..
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~ 194 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALAR 194 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHH
Confidence 11 45678889875321 3589999873 33355666555443
No 394
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=80.40 E-value=10 Score=30.69 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897 29 NPDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~ 89 (232)
..+..++|+|+|+-.-|..+++ ...+.+.+|+|...++...+.+......-.+.-+.+|..
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~ 143 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYE 143 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHH
Confidence 3567899999999999988887 236899999999887654444433211112444555553
No 395
>PRK07102 short chain dehydrogenase; Provisional
Probab=80.10 E-value=13 Score=29.21 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=44.5
Q ss_pred EEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---------CCccee
Q 047897 33 TVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---------PQFDLV 99 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~D~V 99 (232)
+++=.|+ +|.++..+ ++.+.+|++++.+++-.+...+.....+- .++.++.+|..+... ..+|.+
T Consensus 3 ~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA-VAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 5776774 45555544 44688999999988765544444333221 478999999987532 136888
Q ss_pred eccc
Q 047897 100 VANI 103 (232)
Q Consensus 100 i~n~ 103 (232)
+.|.
T Consensus 81 v~~a 84 (243)
T PRK07102 81 LIAV 84 (243)
T ss_pred EECC
Confidence 8764
No 396
>PRK06196 oxidoreductase; Provisional
Probab=80.05 E-value=11 Score=31.32 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=48.8
Q ss_pred HHHHHHhcCCCCCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-- 92 (232)
Q Consensus 19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-- 92 (232)
...+....++ .+.+||=.|++ |.++..++ +.+.+|++++.+++..+.+.+.+ .++.++.+|+.+..
T Consensus 15 ~~~~~~~~~l-~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v 86 (315)
T PRK06196 15 AEEVLAGHDL-SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESV 86 (315)
T ss_pred HHHHhcCCCC-CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHH
Confidence 4444433333 45678888864 44554444 47889999999877655443333 23778899987753
Q ss_pred ----------CCCcceeecccC
Q 047897 93 ----------FPQFDLVVANIP 104 (232)
Q Consensus 93 ----------~~~~D~Vi~n~p 104 (232)
....|++|.|..
T Consensus 87 ~~~~~~~~~~~~~iD~li~nAg 108 (315)
T PRK06196 87 RAFAERFLDSGRRIDILINNAG 108 (315)
T ss_pred HHHHHHHHhcCCCCCEEEECCC
Confidence 135788888753
No 397
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=80.05 E-value=2.2 Score=32.75 Aligned_cols=35 Identities=40% Similarity=0.477 Sum_probs=19.7
Q ss_pred EEEcCCccH--hHHHHHhcCCeEEEEEcCHHHHHHHH
Q 047897 35 LEIGPGTGN--LTLKLLEVSKKVHAIEIDERMVEILN 69 (232)
Q Consensus 35 LDiG~G~G~--~t~~l~~~~~~v~~vD~~~~~~~~a~ 69 (232)
-=+|.|-=+ ++..+++.+.+|+|+|+|++.++..+
T Consensus 4 ~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 4 AVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp EEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred EEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 334544433 22334447899999999999877654
No 398
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=79.83 E-value=15 Score=28.89 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=47.3
Q ss_pred CCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+.++|=.|++ |.++.. +++.+.+|++++.+......+...+...+ .++.++.+|+.+.. .+
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5677777754 444444 44467899999998876666655554433 46889999987642 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.+|.+..
T Consensus 80 ~~d~vi~~ag 89 (250)
T TIGR03206 80 PVDVLVNNAG 89 (250)
T ss_pred CCCEEEECCC
Confidence 4688887764
No 399
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=79.75 E-value=8.7 Score=32.38 Aligned_cols=46 Identities=26% Similarity=0.494 Sum_probs=34.4
Q ss_pred hcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897 25 KSSINPDDTVLEIGPGT-GNLTLKLLE-VSKKVHAIEIDERMVEILNR 70 (232)
Q Consensus 25 ~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~ 70 (232)
...+.++++||=.|+|. |.++..+++ .+.+|++++.+++-.+.+++
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 35667889999999854 555555555 56789999999988877754
No 400
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.48 E-value=10 Score=33.16 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=43.4
Q ss_pred EEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC------CCCCcceeecc
Q 047897 33 TVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT------EFPQFDLVVAN 102 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~------~~~~~D~Vi~n 102 (232)
+|+=+|+ |.++..+++ .+..|+.+|.+++.++.+++. ..+.++.||+.+. .....|.|++-
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 3555555 777777766 578999999999987766542 1377889998764 23367777765
Q ss_pred cC
Q 047897 103 IP 104 (232)
Q Consensus 103 ~p 104 (232)
.+
T Consensus 73 ~~ 74 (453)
T PRK09496 73 TD 74 (453)
T ss_pred cC
Confidence 44
No 401
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.47 E-value=6.7 Score=32.89 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=39.6
Q ss_pred HHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHH
Q 047897 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRR 71 (232)
Q Consensus 21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~ 71 (232)
..++.+++.+|+++.=+|+|.=.++...-. ...+++|+|++++=.+.|++.
T Consensus 183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 345667888999999999887666655533 458999999999988887764
No 402
>PRK05872 short chain dehydrogenase; Provisional
Probab=79.47 E-value=15 Score=30.22 Aligned_cols=72 Identities=24% Similarity=0.345 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+++-++...+.+.. + .++..+.+|+.+.. ++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D--DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46688888865542 4444555788999999998766655444421 1 34666678887642 23
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.+|.|.-
T Consensus 85 ~id~vI~nAG 94 (296)
T PRK05872 85 GIDVVVANAG 94 (296)
T ss_pred CCCEEEECCC
Confidence 5798888753
No 403
>PRK09242 tropinone reductase; Provisional
Probab=79.45 E-value=17 Score=28.82 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+++-.+...+.+.......++.++.+|+.+.. ++
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45678888875442 4444455788999999988777666555543311146888999987642 23
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.|+.+.-
T Consensus 88 ~id~li~~ag 97 (257)
T PRK09242 88 GLHILVNNAG 97 (257)
T ss_pred CCCEEEECCC
Confidence 5788887654
No 404
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=79.24 E-value=8.6 Score=31.84 Aligned_cols=45 Identities=29% Similarity=0.517 Sum_probs=34.5
Q ss_pred cCCCCCCEEEEEcCC-ccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897 26 SSINPDDTVLEIGPG-TGNLTLKLLE-VSKKVHAIEIDERMVEILNR 70 (232)
Q Consensus 26 ~~~~~~~~vLDiG~G-~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~ 70 (232)
..+.++++||..|+| .|..+..+++ .+.+|++++.+++..+.+++
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 346678888888876 3667777776 67889999999988877754
No 405
>PRK08643 acetoin reductase; Validated
Probab=78.90 E-value=17 Score=28.80 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=46.4
Q ss_pred CEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897 32 DTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ 95 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~ 95 (232)
..+|=.|+. |.++.. +++.+.+|+.++.+++..+.+...+...+ .++.++.+|+.+.. .+.
T Consensus 3 k~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 466766754 444444 44478899999998877666655554433 46788999998753 125
Q ss_pred cceeecccC
Q 047897 96 FDLVVANIP 104 (232)
Q Consensus 96 ~D~Vi~n~p 104 (232)
.|.+|.|..
T Consensus 80 id~vi~~ag 88 (256)
T PRK08643 80 LNVVVNNAG 88 (256)
T ss_pred CCEEEECCC
Confidence 688887753
No 406
>PRK05855 short chain dehydrogenase; Validated
Probab=78.74 E-value=15 Score=33.02 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=47.5
Q ss_pred CCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+.++|=+|+ +|.++.. +++.+.+|+.++.+..-.+.+.+.....+ .++.++.+|+.+.. .+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 456776775 4444444 44478899999999877666555555444 46889999998753 12
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|+++.|.
T Consensus 392 ~id~lv~~A 400 (582)
T PRK05855 392 VPDIVVNNA 400 (582)
T ss_pred CCcEEEECC
Confidence 478888774
No 407
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=78.44 E-value=16 Score=35.92 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=53.4
Q ss_pred CCEEEEEcCCc-cHhHHHHH-h-cCC-------------eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897 31 DDTVLEIGPGT-GNLTLKLL-E-VSK-------------KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-- 92 (232)
Q Consensus 31 ~~~vLDiG~G~-G~~t~~l~-~-~~~-------------~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-- 92 (232)
..+|+=||||. |......+ + ... .|+..|.+++..+.+.+.. ++++.+..|+.+..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------ENAEAVQLDVSDSESL 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc------CCCceEEeecCCHHHH
Confidence 45789999974 54333333 3 222 3778898876665444432 24556666665532
Q ss_pred ---CCCcceeecccCcccchHHHHHHhcCCCCc
Q 047897 93 ---FPQFDLVVANIPYGISSPLVAKLVYGTKSF 122 (232)
Q Consensus 93 ---~~~~D~Vi~n~p~~~~~~~l~~~~~~~~~~ 122 (232)
....|+|++-+|+....+++...+....+.
T Consensus 643 ~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHv 675 (1042)
T PLN02819 643 LKYVSQVDVVISLLPASCHAVVAKACIELKKHL 675 (1042)
T ss_pred HHhhcCCCEEEECCCchhhHHHHHHHHHcCCCE
Confidence 135899999999988777766666554443
No 408
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.25 E-value=14 Score=32.92 Aligned_cols=77 Identities=19% Similarity=0.322 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCccHhHHH--HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcc
Q 047897 29 NPDDTVLEIGPGTGNLTLK--LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYG 106 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~--l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~ 106 (232)
.++.+|+=+|.|.-.++.. +...+.+|++.|..+...+. +...| +.+..++-.......+|+||.++...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~----l~~~g----~~~~~~~~~~~~l~~~D~VV~SpGi~ 81 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRP----HAERG----VATVSTSDAVQQIADYALVVTSPGFR 81 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH----HHhCC----CEEEcCcchHhHhhcCCEEEECCCCC
Confidence 3677899999987665555 44478999999977654332 22223 44444432211223578888877555
Q ss_pred cchHHHH
Q 047897 107 ISSPLVA 113 (232)
Q Consensus 107 ~~~~~l~ 113 (232)
...|.+.
T Consensus 82 ~~~p~~~ 88 (488)
T PRK03369 82 PTAPVLA 88 (488)
T ss_pred CCCHHHH
Confidence 5555543
No 409
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=78.22 E-value=19 Score=28.38 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|++++.++. +.+.+.....+ .++.++.+|+.+.. .+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46678888875542 44445557889999987652 22333333333 46889999988752 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.+|.|.-
T Consensus 80 ~~d~li~~ag 89 (248)
T TIGR01832 80 HIDILVNNAG 89 (248)
T ss_pred CCCEEEECCC
Confidence 4788887753
No 410
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.17 E-value=16 Score=29.54 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCcc-H----hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPGTG-N----LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G~G-~----~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+.++|=.|+|.| . ++..+++.+.+|+.++.+...-+.+.+..... +...++.+|+.+..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhh
Confidence 4567888888652 3 55556667889998887743333333332221 24567888987642
Q ss_pred CCCcceeecccC
Q 047897 93 FPQFDLVVANIP 104 (232)
Q Consensus 93 ~~~~D~Vi~n~p 104 (232)
++.+|++|.|.-
T Consensus 82 ~g~iD~linnAg 93 (262)
T PRK07984 82 WPKFDGFVHSIG 93 (262)
T ss_pred cCCCCEEEECCc
Confidence 235799998864
No 411
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.04 E-value=17 Score=29.52 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCCEEEEEcCC----ccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPG----TGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G----~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+..+|=.|++ .|. ++..+++.+.+|+.++.+....+.+.+.....+ .. .++.+|+.+..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 35678888875 332 444455578899999888643333333333323 23 56788988753
Q ss_pred CCCcceeecccC
Q 047897 93 FPQFDLVVANIP 104 (232)
Q Consensus 93 ~~~~D~Vi~n~p 104 (232)
+...|++|.|.-
T Consensus 81 ~g~iDilVnnAG 92 (274)
T PRK08415 81 LGKIDFIVHSVA 92 (274)
T ss_pred cCCCCEEEECCc
Confidence 235788888753
No 412
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.99 E-value=19 Score=28.11 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
++.+||=.|++ |.++.. +++.+.+|++++.+++-.+.+.+..... .++.++.+|..+.. .
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35688888875 443333 4447889999999887666554444332 35888999988643 1
Q ss_pred CCcceeecccC
Q 047897 94 PQFDLVVANIP 104 (232)
Q Consensus 94 ~~~D~Vi~n~p 104 (232)
...|.++.+..
T Consensus 80 ~~id~ii~~ag 90 (238)
T PRK05786 80 NAIDGLVVTVG 90 (238)
T ss_pred CCCCEEEEcCC
Confidence 23577776653
No 413
>PRK05599 hypothetical protein; Provisional
Probab=77.62 E-value=19 Score=28.56 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=45.4
Q ss_pred EEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCcc
Q 047897 33 TVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQFD 97 (232)
Q Consensus 33 ~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~D 97 (232)
.+|=.|++.|. ++..++ .+.+|+.++.+++-++.+.+.+...+- .++.++.+|+.+.. .+..|
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 46666766553 344444 578999999888777666666654432 34778899987752 13578
Q ss_pred eeecccC
Q 047897 98 LVVANIP 104 (232)
Q Consensus 98 ~Vi~n~p 104 (232)
.++.|.-
T Consensus 80 ~lv~nag 86 (246)
T PRK05599 80 LAVVAFG 86 (246)
T ss_pred EEEEecC
Confidence 8887643
No 414
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.57 E-value=18 Score=28.59 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=47.1
Q ss_pred CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+.++|=.| |+|.++..+++ .+.+|++++.++.-.+.........+ .++.++.+|+.+.. .+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45677555 45666666555 67899999998876665555554433 46889999987642 12
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|.|+.+.
T Consensus 81 ~~d~vi~~a 89 (258)
T PRK12429 81 GVDILVNNA 89 (258)
T ss_pred CCCEEEECC
Confidence 468888765
No 415
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=77.56 E-value=11 Score=29.74 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCCc-cHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897 28 INPDDTVLEIGPGT-GNLTLKLLE-VSKKVHAIEIDERMVEILNR 70 (232)
Q Consensus 28 ~~~~~~vLDiG~G~-G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~ 70 (232)
+.++++||-.|+|. |..+..+++ .+.+|++++.+++..+.+++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 36788999999985 666666666 67899999999887776654
No 416
>PRK06181 short chain dehydrogenase; Provisional
Probab=77.55 E-value=19 Score=28.74 Aligned_cols=69 Identities=22% Similarity=0.312 Sum_probs=44.9
Q ss_pred CEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897 32 DTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ 95 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~ 95 (232)
.++|=.| |+|.++..+ ++.+.+|++++.++.-.+...+.+...+ .++.++.+|+.+.. ...
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3566566 445555544 4467899999998776665555554433 46888999987753 124
Q ss_pred cceeeccc
Q 047897 96 FDLVVANI 103 (232)
Q Consensus 96 ~D~Vi~n~ 103 (232)
.|.|+.+.
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 68888763
No 417
>PRK07904 short chain dehydrogenase; Provisional
Probab=77.50 E-value=16 Score=29.19 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCccH---hHHHHHhc-CCeEEEEEcCHHH-HHHHHHHHhhcCCCccEEEEEcCCCCCCC----------
Q 047897 29 NPDDTVLEIGPGTGN---LTLKLLEV-SKKVHAIEIDERM-VEILNRRAADSGFHDRLNVISKDALKTEF---------- 93 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~---~t~~l~~~-~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---------- 93 (232)
..+.+||=.|++.|. ++..+++. +.+|+.++.+++- ++.+.+.+...+. .++.++.+|+.+...
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 356678888885442 33334445 4799999988763 5544444443332 368899999876531
Q ss_pred -CCcceeecccCc
Q 047897 94 -PQFDLVVANIPY 105 (232)
Q Consensus 94 -~~~D~Vi~n~p~ 105 (232)
...|.++.|...
T Consensus 85 ~g~id~li~~ag~ 97 (253)
T PRK07904 85 GGDVDVAIVAFGL 97 (253)
T ss_pred cCCCCEEEEeeec
Confidence 257888876543
No 418
>PLN02780 ketoreductase/ oxidoreductase
Probab=77.31 E-value=15 Score=30.67 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=41.6
Q ss_pred CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897 30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90 (232)
Q Consensus 30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 90 (232)
.|..+|=.|++.| .++..+++.+.+|+.++.+++-++...+.+....-..++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 3678888887665 355556667899999999998777666655432111356777778763
No 419
>PRK06114 short chain dehydrogenase; Provisional
Probab=77.29 E-value=23 Score=28.11 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHH-HHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDER-MVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+..+|=.|++ |.++..++ +.+.+|+.++.++. .++...+.+...+ .++.++.+|+.+..
T Consensus 7 ~~k~~lVtG~s-~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 7 DGQVAFVTGAG-SGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35678877754 44555544 46889999997642 3333334443333 46888899987652
Q ss_pred CCCcceeecccC
Q 047897 93 FPQFDLVVANIP 104 (232)
Q Consensus 93 ~~~~D~Vi~n~p 104 (232)
+...|.+|.|..
T Consensus 84 ~g~id~li~~ag 95 (254)
T PRK06114 84 LGALTLAVNAAG 95 (254)
T ss_pred cCCCCEEEECCC
Confidence 124688887754
No 420
>PRK09072 short chain dehydrogenase; Provisional
Probab=77.18 E-value=20 Score=28.68 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=47.0
Q ss_pred CCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------CCCc
Q 047897 31 DDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----------FPQF 96 (232)
Q Consensus 31 ~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----------~~~~ 96 (232)
+.++|=.|++.|. ++..+++.+.+|++++.+++-.+.....+ .. +.++.++.+|..+.. ....
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 4567777765432 44445557899999999987666555444 22 247889999987753 1346
Q ss_pred ceeecccC
Q 047897 97 DLVVANIP 104 (232)
Q Consensus 97 D~Vi~n~p 104 (232)
|.++.+..
T Consensus 82 d~lv~~ag 89 (263)
T PRK09072 82 NVLINNAG 89 (263)
T ss_pred CEEEECCC
Confidence 88887643
No 421
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=77.09 E-value=21 Score=28.04 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
.+.++|=.|+ +|.++..+ ++.+.+|++++.++.-.....+.+...+ .++.++.+|..+.. .
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3557886665 45555554 4468899999998765554444444333 45889999987642 1
Q ss_pred CCcceeecccC
Q 047897 94 PQFDLVVANIP 104 (232)
Q Consensus 94 ~~~D~Vi~n~p 104 (232)
+.+|.|+.+..
T Consensus 82 ~~~d~vi~~ag 92 (251)
T PRK12826 82 GRLDILVANAG 92 (251)
T ss_pred CCCCEEEECCC
Confidence 25788887653
No 422
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.95 E-value=29 Score=30.73 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCccHh--HHHHHhcCCeEEEEEcCHH-HHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcc
Q 047897 30 PDDTVLEIGPGTGNL--TLKLLEVSKKVHAIEIDER-MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYG 106 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~--t~~l~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~ 106 (232)
.+.+|+=+|+|.-++ +..+.+.+.+|+++|.++. ......+.++..| +++..++... ....+|+||..+-..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~~~~-~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG----ATVRLGPGPT-LPEDTDLVVTSPGWR 89 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC----CEEEECCCcc-ccCCCCEEEECCCcC
Confidence 356899999886544 3333447889999996543 3333344455443 5666655433 223578777654333
Q ss_pred cchHH
Q 047897 107 ISSPL 111 (232)
Q Consensus 107 ~~~~~ 111 (232)
...+.
T Consensus 90 ~~~~~ 94 (480)
T PRK01438 90 PDAPL 94 (480)
T ss_pred CCCHH
Confidence 33333
No 423
>PRK11524 putative methyltransferase; Provisional
Probab=76.82 E-value=1.3 Score=36.50 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCC----CCCCcceeecccCccc
Q 047897 79 DRLNVISKDALKT----EFPQFDLVVANIPYGI 107 (232)
Q Consensus 79 ~~~~~~~~D~~~~----~~~~~D~Vi~n~p~~~ 107 (232)
++-.++++|+++. +.+++|+|++||||+.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~ 39 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNI 39 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCccc
Confidence 3457899999874 3458999999999976
No 424
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.63 E-value=15 Score=29.22 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCc-cH----hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPGT-GN----LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G~-G~----~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+.++|=.|.+. +. ++..+++.+.+|+.++.+....+.+.+.. + .++.++.+|+.+..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV---D--EEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc---c--CceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 456788888753 23 55555557899999887754333333221 1 35778899997642
Q ss_pred CCCcceeecccC
Q 047897 93 FPQFDLVVANIP 104 (232)
Q Consensus 93 ~~~~D~Vi~n~p 104 (232)
++..|+++.|.-
T Consensus 81 ~g~iD~lv~nAg 92 (252)
T PRK06079 81 VGKIDGIVHAIA 92 (252)
T ss_pred hCCCCEEEEccc
Confidence 135788888753
No 425
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=75.92 E-value=5.5 Score=35.07 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=40.1
Q ss_pred cCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcccchHHHH
Q 047897 38 GPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVA 113 (232)
Q Consensus 38 G~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~~~~l~ 113 (232)
|+|...++..+.+.+..|++.|.++.. +. ...++..| +.+..+.-.+.....+|+||.++-.....+.+.
T Consensus 9 G~gm~~la~~l~~~G~~V~~~D~~~~~-~~-~~~l~~~g----i~~~~~~~~~~~~~~~d~vV~SpgI~~~~~~~~ 78 (448)
T TIGR01081 9 GTFMGGLAMIAKQLGHEVTGSDANVYP-PM-STQLEAQG----IEIIEGFDAAQLEPKPDLVVIGNAMKRGNPCVE 78 (448)
T ss_pred HHhHHHHHHHHHhCCCEEEEECCCCCc-HH-HHHHHHCC----CEEeCCCCHHHCCCCCCEEEECCCCCCCCHHHH
Confidence 456667888888899999999986532 11 11233333 445443322211235788887765544544443
No 426
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.84 E-value=24 Score=27.74 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=46.1
Q ss_pred CCEEEEEcCCcc--H-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTG--N-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------PQ 95 (232)
Q Consensus 31 ~~~vLDiG~G~G--~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------~~ 95 (232)
+.++|=+|++.| . ++..+++.+.+|++++.++.-.+.+...... + .++.++.+|+.+... +.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 456777775433 2 4444555788999999998766555444432 2 458899999876531 24
Q ss_pred cceeecccC
Q 047897 96 FDLVVANIP 104 (232)
Q Consensus 96 ~D~Vi~n~p 104 (232)
+|.||.+..
T Consensus 82 ~d~vi~~ag 90 (251)
T PRK07231 82 VDILVNNAG 90 (251)
T ss_pred CCEEEECCC
Confidence 688887654
No 427
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=75.56 E-value=24 Score=27.54 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=46.7
Q ss_pred CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+.++|=.|+ +|.++..+++ .+.+|++++.++.-.+.........+ .++.++.+|+.+.. ..
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 457887775 6666666654 67889999998876665555444333 46888889987642 12
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
+.|.|+.+.
T Consensus 82 ~id~vi~~a 90 (246)
T PRK05653 82 ALDILVNNA 90 (246)
T ss_pred CCCEEEECC
Confidence 458777664
No 428
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.55 E-value=19 Score=28.93 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=43.9
Q ss_pred CCCEEEEEcC-CccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGP-GTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~-G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+..+|=.|+ |++.++.+ +++.+.+|+....+....+.+++.....+ ....+.+|+.+..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD---SELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC---CceEEECCCCCHHHHHHHHHHHHHH
Confidence 4567888886 34444444 44578899887665444444444433322 2446888987752
Q ss_pred CCCcceeecccC
Q 047897 93 FPQFDLVVANIP 104 (232)
Q Consensus 93 ~~~~D~Vi~n~p 104 (232)
+...|++|.|.-
T Consensus 82 ~g~iD~lVnnAG 93 (261)
T PRK08690 82 WDGLDGLVHSIG 93 (261)
T ss_pred hCCCcEEEECCc
Confidence 235788888853
No 429
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.25 E-value=38 Score=26.97 Aligned_cols=66 Identities=21% Similarity=0.132 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-------------E 92 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-------------~ 92 (232)
....||=.||..|+++.+++. .++.|++.-.+-+-...+... . ++.....|+.+. +
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~---~----gl~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ---F----GLKPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh---h----CCeeEEeccCChHHHHHHHHHHhhCC
Confidence 456799999999988777766 689999987654333322222 2 244555555443 3
Q ss_pred CCCcceeecc
Q 047897 93 FPQFDLVVAN 102 (232)
Q Consensus 93 ~~~~D~Vi~n 102 (232)
+++.|+.+-|
T Consensus 79 ~Gkld~L~NN 88 (289)
T KOG1209|consen 79 DGKLDLLYNN 88 (289)
T ss_pred CCceEEEEcC
Confidence 4466777766
No 430
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=75.02 E-value=30 Score=28.53 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=38.6
Q ss_pred CCCEEEEEcCCccHhHHHH----HhcCC-eEEEEEcCHH---HHHHHHHHHhhcCCCccEEEEEcCCCCCC-----CCCc
Q 047897 30 PDDTVLEIGPGTGNLTLKL----LEVSK-KVHAIEIDER---MVEILNRRAADSGFHDRLNVISKDALKTE-----FPQF 96 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l----~~~~~-~v~~vD~~~~---~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~ 96 (232)
.+.++|=+|+| |. ++++ +..+. +|+.++.+++ -.+...+.+...+ ..+.+...|..+.. ....
T Consensus 125 ~~k~vlI~GAG-Ga-grAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 125 KGKKLTVIGAG-GA-ATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV--PECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred CCCEEEEECCc-HH-HHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC--CCceeEEechhhhhHHHhhhccC
Confidence 46688989986 43 3333 34554 5999998863 2333333332221 23344445554321 1256
Q ss_pred ceeecccCc
Q 047897 97 DLVVANIPY 105 (232)
Q Consensus 97 D~Vi~n~p~ 105 (232)
|+||.+.|-
T Consensus 201 DilINaTp~ 209 (289)
T PRK12548 201 DILVNATLV 209 (289)
T ss_pred CEEEEeCCC
Confidence 888877663
No 431
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.97 E-value=19 Score=28.79 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=42.9
Q ss_pred CCCEEEEEcCCc-cHh----HHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPGT-GNL----TLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G~-G~~----t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+.++|=.|.++ +.+ +..+++.+.+|+.++.+....+.+++...... ..++.++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 466888899762 444 44445578899988654321222222222211 146788899997752
Q ss_pred CCCcceeecccC
Q 047897 93 FPQFDLVVANIP 104 (232)
Q Consensus 93 ~~~~D~Vi~n~p 104 (232)
++..|+++.|.-
T Consensus 85 ~g~ld~lv~nag 96 (257)
T PRK08594 85 VGVIHGVAHCIA 96 (257)
T ss_pred CCCccEEEECcc
Confidence 235788887653
No 432
>PRK05650 short chain dehydrogenase; Provisional
Probab=74.88 E-value=23 Score=28.38 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=44.2
Q ss_pred EEEEEcCCccHhH----HHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCc
Q 047897 33 TVLEIGPGTGNLT----LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQF 96 (232)
Q Consensus 33 ~vLDiG~G~G~~t----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~ 96 (232)
++|=.|+ +|.++ ..+++.+.+|+.++.+.+-.+.+...+...+ .++.++.+|+.+.. ...+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4666665 44444 4444578899999998776655555444433 46888999987642 1257
Q ss_pred ceeeccc
Q 047897 97 DLVVANI 103 (232)
Q Consensus 97 D~Vi~n~ 103 (232)
|.+|.|.
T Consensus 79 d~lI~~a 85 (270)
T PRK05650 79 DVIVNNA 85 (270)
T ss_pred CEEEECC
Confidence 8888764
No 433
>PRK07201 short chain dehydrogenase; Provisional
Probab=74.77 E-value=21 Score=32.90 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=47.7
Q ss_pred CCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+.++|=.|++ |.++..+ ++.+.+|++++.+++-++...+.....+ .++.++.+|+.+.. .+
T Consensus 371 ~k~vlItGas-~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 371 GKVVLITGAS-SGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4567766654 4444444 4478899999999877666555554433 46889999987752 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|+++.|.-
T Consensus 448 ~id~li~~Ag 457 (657)
T PRK07201 448 HVDYLVNNAG 457 (657)
T ss_pred CCCEEEECCC
Confidence 4788887754
No 434
>PRK13699 putative methylase; Provisional
Probab=74.54 E-value=1.6 Score=34.79 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.0
Q ss_pred EEEEEcCCCCC----CCCCcceeecccCccc
Q 047897 81 LNVISKDALKT----EFPQFDLVVANIPYGI 107 (232)
Q Consensus 81 ~~~~~~D~~~~----~~~~~D~Vi~n~p~~~ 107 (232)
++++++|.++. +.+++|+|+.+|||++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i 32 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLV 32 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCccc
Confidence 46788998764 5568999999999985
No 435
>PRK09291 short chain dehydrogenase; Provisional
Probab=74.47 E-value=22 Score=28.15 Aligned_cols=69 Identities=25% Similarity=0.180 Sum_probs=45.4
Q ss_pred CEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----C-CCcceeec
Q 047897 32 DTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----F-PQFDLVVA 101 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----~-~~~D~Vi~ 101 (232)
.++|=.|++ |.++.. +++.+.+|+++..++.-.+..++.....+ .++.++.+|+.+.. . ...|.|+.
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 467777764 444444 44478899999988776665555554444 35888999987642 1 15788887
Q ss_pred cc
Q 047897 102 NI 103 (232)
Q Consensus 102 n~ 103 (232)
|.
T Consensus 80 ~a 81 (257)
T PRK09291 80 NA 81 (257)
T ss_pred CC
Confidence 64
No 436
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.38 E-value=35 Score=28.62 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCcc--H-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTG--N-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G--~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+..++=.|+-+| . .+..++..+.+|+-.-.|.+..+.+.+.........++.+++.|..++. ..
T Consensus 34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~ 113 (314)
T KOG1208|consen 34 SGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKEG 113 (314)
T ss_pred CCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 3456777776444 3 5555666889999999998777777777765333467889999998762 23
Q ss_pred Ccceeecc
Q 047897 95 QFDLVVAN 102 (232)
Q Consensus 95 ~~D~Vi~n 102 (232)
+.|+.|.|
T Consensus 114 ~ldvLInN 121 (314)
T KOG1208|consen 114 PLDVLINN 121 (314)
T ss_pred CccEEEeC
Confidence 56888776
No 437
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=74.26 E-value=13 Score=32.88 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCEEEEEcCCccHhH--HHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcccc
Q 047897 31 DDTVLEIGPGTGNLT--LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGIS 108 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t--~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~ 108 (232)
+.+|+=+|-|--+.+ ..|.+.+..|++.|.++............ +++++..+.-.......+|+|+-+|-....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~----~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~ 82 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLL----EGIEVELGSHDDEDLAEFDLVVKSPGIPPT 82 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhc----cCceeecCccchhccccCCEEEECCCCCCC
Confidence 678888887755433 33445799999999887762222221111 467777776555555688999999877777
Q ss_pred hHHHHHHh
Q 047897 109 SPLVAKLV 116 (232)
Q Consensus 109 ~~~l~~~~ 116 (232)
.|.+....
T Consensus 83 ~p~v~~A~ 90 (448)
T COG0771 83 HPLVEAAK 90 (448)
T ss_pred CHHHHHHH
Confidence 76654443
No 438
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=74.11 E-value=31 Score=25.02 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=39.5
Q ss_pred CCCEEEEEcCCccHhHHHHHh----c-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE----V-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP 104 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~----~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p 104 (232)
.+.+++=+|+| ..+..++. . ...|+.+|.+++..+...+...... +.....|..+. .+..|+|++..|
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~Dvvi~~~~ 90 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL-LAEADLIINTTP 90 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc-cccCCEEEeCcC
Confidence 46789999986 44444443 4 3689999999876655444432210 11112222221 346799888766
Q ss_pred c
Q 047897 105 Y 105 (232)
Q Consensus 105 ~ 105 (232)
.
T Consensus 91 ~ 91 (155)
T cd01065 91 V 91 (155)
T ss_pred C
Confidence 3
No 439
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=74.09 E-value=13 Score=28.39 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=37.1
Q ss_pred CEEEEEcCCccHhHHHHHhcCCeEEEEEcC-HHHHHHHHHHHhhcCC--CccEEEEEcCCCCC
Q 047897 32 DTVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGF--HDRLNVISKDALKT 91 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~--~~~~~~~~~D~~~~ 91 (232)
..|+.+|||.=.....+......+.-+|+| |++++.-++.+...+. +.+.+++.+|+.+.
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~ 142 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDD 142 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSH
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccch
Confidence 489999999988888887744366666666 5566666666655421 12356788888763
No 440
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=74.02 E-value=6.9 Score=34.44 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=36.1
Q ss_pred HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcccchHHHHH
Q 047897 43 NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAK 114 (232)
Q Consensus 43 ~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~~~~l~~ 114 (232)
.++..|.+.+.+|++.|.++.. . .+.++..| +.+..+ ........+|+||.++-.....|.+..
T Consensus 14 ~la~~L~~~G~~v~~~D~~~~~--~-~~~l~~~g----i~~~~g-~~~~~~~~~d~vV~spgi~~~~p~~~~ 77 (448)
T TIGR01082 14 GIAEILLNRGYQVSGSDIAENA--T-TKRLEALG----IPIYIG-HSAENLDDADVVVVSAAIKDDNPEIVE 77 (448)
T ss_pred HHHHHHHHCCCeEEEECCCcch--H-HHHHHHCc----CEEeCC-CCHHHCCCCCEEEECCCCCCCCHHHHH
Confidence 3566677789999999976542 1 12233333 455544 111123357888877655555554443
No 441
>PRK09186 flagellin modification protein A; Provisional
Probab=73.90 E-value=27 Score=27.62 Aligned_cols=73 Identities=22% Similarity=0.216 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897 30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------ 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------ 93 (232)
.+.++|=.|++. .++.. +++.+.+|+++..+++-++.+.+.+........+.++.+|+.+...
T Consensus 3 ~~k~vlItGas~-giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAGG-LIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 356788778643 34444 4447889999998887766555554322111356778899987521
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
...|.||.|.
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 1368888764
No 442
>PRK12743 oxidoreductase; Provisional
Probab=73.66 E-value=29 Score=27.59 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=43.4
Q ss_pred CCEEEEEcCCccHhHHHHH----hcCCeEEEEEc-CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 31 DDTVLEIGPGTGNLTLKLL----EVSKKVHAIEI-DERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
+.++|=.|++ |.++..++ +.+.+|+.+.. +....+.+.+.....+ .++.++.+|..+.. +
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3467778864 44455444 46888987753 4444444444444433 46889999987742 1
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
...|.++.|.
T Consensus 79 ~~id~li~~a 88 (256)
T PRK12743 79 GRIDVLVNNA 88 (256)
T ss_pred CCCCEEEECC
Confidence 2568888764
No 443
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=73.58 E-value=38 Score=27.67 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCC-CccEEEEEcCCCCCC-------------
Q 047897 30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF-HDRLNVISKDALKTE------------- 92 (232)
Q Consensus 30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~D~~~~~------------- 92 (232)
.+..+|--|.++| .++..+++.+++|+..+.+++.++...+.....+. .+++..+.+|+.+.+
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~ 86 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF 86 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence 5677888888776 46677777999999999999988777776655443 256889999997653
Q ss_pred CCCcceeeccc
Q 047897 93 FPQFDLVVANI 103 (232)
Q Consensus 93 ~~~~D~Vi~n~ 103 (232)
+...|+++.|.
T Consensus 87 ~GkidiLvnna 97 (270)
T KOG0725|consen 87 FGKIDILVNNA 97 (270)
T ss_pred CCCCCEEEEcC
Confidence 23578888774
No 444
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.54 E-value=25 Score=27.98 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.+.++|=.|++.|. ++..+++.+.+|+.++.+.. .+.+.+.....+ .++.++.+|+.+.. .+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTN-WDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788888876652 44445557899999988733 344444444333 46889999998743 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|.++.|..
T Consensus 91 ~id~li~~ag 100 (258)
T PRK06935 91 KIDILVNNAG 100 (258)
T ss_pred CCCEEEECCC
Confidence 5688887643
No 445
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=73.48 E-value=17 Score=30.37 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=33.7
Q ss_pred HhcCCCCCCEEEEEcCC-ccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897 24 RKSSINPDDTVLEIGPG-TGNLTLKLLE-VSKKVHAIEIDERMVEILNRR 71 (232)
Q Consensus 24 ~~~~~~~~~~vLDiG~G-~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~ 71 (232)
...++.++++||=.|+| .|.++..+++ .+.+|++++.+++-.+.+++.
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 34567789999999874 3334444555 677899999998877766553
No 446
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=73.46 E-value=51 Score=28.68 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCccH-----hHHHHHhcCCeEEEEEcCHHHH------------HHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 29 NPDDTVLEIGPGTGN-----LTLKLLEVSKKVHAIEIDERMV------------EILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~-----~t~~l~~~~~~v~~vD~~~~~~------------~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
..+.++|=+|+++|. ++..+ ..+..+++++...+-. +...+.+...| ..+..+.+|+.+.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G--~~a~~i~~DVss~ 115 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAG--LYAKSINGDAFSD 115 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcC--CceEEEEcCCCCH
Confidence 345789999998775 23455 5788888887533111 12333333334 2467789999874
Q ss_pred C------------CCCcceeecccCcc
Q 047897 92 E------------FPQFDLVVANIPYG 106 (232)
Q Consensus 92 ~------------~~~~D~Vi~n~p~~ 106 (232)
. +...|+++.|.-+.
T Consensus 116 E~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 116 EIKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 2 23679999887655
No 447
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=73.25 E-value=16 Score=31.02 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=33.5
Q ss_pred HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897 24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR 70 (232)
Q Consensus 24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~ 70 (232)
+...+.++++||=.|+|. |.++..+++ .+. +|+++|.+++-.+.+++
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 345667889998888743 344455555 565 79999999988877755
No 448
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=73.00 E-value=30 Score=27.42 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=43.7
Q ss_pred CEEEEEcCCccHhHH----HHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897 32 DTVLEIGPGTGNLTL----KLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ 95 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~ 95 (232)
.++|=.|++ |.++. .+++.+.+|+.++.+....+...+.+....-..++.++.+|+.+.. +..
T Consensus 3 k~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467777854 44444 4445788999999887655444433322110135889999987642 124
Q ss_pred cceeeccc
Q 047897 96 FDLVVANI 103 (232)
Q Consensus 96 ~D~Vi~n~ 103 (232)
.|.|+.+.
T Consensus 82 id~vv~~a 89 (259)
T PRK12384 82 VDLLVYNA 89 (259)
T ss_pred CCEEEECC
Confidence 68888764
No 449
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=72.91 E-value=28 Score=32.56 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhh-cCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAAD-SGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+.++|=.|++ |.++.. +++.+.+|++++.+.+..+...+.+.. .+. +++..+.+|+.+..
T Consensus 413 ~gkvvLVTGas-ggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~-~~~~~v~~Dvtd~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 413 ARRVAFVTGGA-GGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGA-GRAVALKMDVTDEQAVKAAFADVALA 490 (676)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCC-CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 35678877765 444444 444789999999998776655544432 121 35778899987642
Q ss_pred CCCcceeecccC
Q 047897 93 FPQFDLVVANIP 104 (232)
Q Consensus 93 ~~~~D~Vi~n~p 104 (232)
++..|++|.|.-
T Consensus 491 ~g~iDilV~nAG 502 (676)
T TIGR02632 491 YGGVDIVVNNAG 502 (676)
T ss_pred cCCCcEEEECCC
Confidence 125788888754
No 450
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=72.63 E-value=35 Score=28.33 Aligned_cols=72 Identities=18% Similarity=0.103 Sum_probs=45.9
Q ss_pred CCEEEEEcCCccH---hHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGN---LTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~---~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+.++|=.|++.|. ++..+++.+ .+|+.+..+.+-.+.+.+.+...+ .++.++.+|+.+.. .+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPK--DSYTIMHLDLGSLDSVRQFVQQFRESGR 80 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4467777765542 444455577 899999888766655544443222 45788889987652 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|++|.|..
T Consensus 81 ~iD~lI~nAG 90 (314)
T TIGR01289 81 PLDALVCNAA 90 (314)
T ss_pred CCCEEEECCC
Confidence 4788888753
No 451
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.62 E-value=27 Score=28.28 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCc--c---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPGT--G---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G~--G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
++..+|=.|++. | .++..|++.+.+|+.++.+....+..++.....+ ....+.+|+.+..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 466788888764 3 3555566688999998877544444444333222 2346788987752
Q ss_pred CCCcceeeccc
Q 047897 93 FPQFDLVVANI 103 (232)
Q Consensus 93 ~~~~D~Vi~n~ 103 (232)
+...|++|.|.
T Consensus 83 ~g~iD~lVnnA 93 (271)
T PRK06505 83 WGKLDFVVHAI 93 (271)
T ss_pred hCCCCEEEECC
Confidence 23578888775
No 452
>PRK05875 short chain dehydrogenase; Provisional
Probab=72.57 E-value=33 Score=27.55 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897 30 PDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------ 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------ 93 (232)
++.++|=.|++ |.++..+ ++.+.+|++++.+++-.+...+.....+...++.++.+|+.+...
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35688888864 3344444 447889999998876555444443322111468889999876531
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
...|.++.+.
T Consensus 85 ~~~d~li~~a 94 (276)
T PRK05875 85 GRLHGVVHCA 94 (276)
T ss_pred CCCCEEEECC
Confidence 2468888764
No 453
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=72.34 E-value=34 Score=27.25 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEE-cCHHHHHHHHHHHhh-cCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIE-IDERMVEILNRRAAD-SGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD-~~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~------------ 92 (232)
++.++|=.|++.|. ++..+++.+.+|+.+. .+++.++...+.... .+ .++.++.+|+.+..
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYG--IKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 46678877866552 5555666788988774 344444443333322 22 46889999998742
Q ss_pred CCCcceeeccc
Q 047897 93 FPQFDLVVANI 103 (232)
Q Consensus 93 ~~~~D~Vi~n~ 103 (232)
+..+|+++.|.
T Consensus 85 ~g~id~lv~nA 95 (260)
T PRK08416 85 FDRVDFFISNA 95 (260)
T ss_pred cCCccEEEECc
Confidence 23578888775
No 454
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.34 E-value=17 Score=29.03 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=43.1
Q ss_pred CCCEEEEEcCC-ccHhHHHH----HhcCCeEEEEEcCH--HHHHHHHHHHhhcCCCccEEEEEcCCCCCC----------
Q 047897 30 PDDTVLEIGPG-TGNLTLKL----LEVSKKVHAIEIDE--RMVEILNRRAADSGFHDRLNVISKDALKTE---------- 92 (232)
Q Consensus 30 ~~~~vLDiG~G-~G~~t~~l----~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---------- 92 (232)
.+.++|=.|+| ++.++.++ ++.+.+|+..+.+. +..+...+.. + .++.++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P--EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C--CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 45688999984 44444444 44788999988653 3333332222 1 24668888987652
Q ss_pred --CCCcceeeccc
Q 047897 93 --FPQFDLVVANI 103 (232)
Q Consensus 93 --~~~~D~Vi~n~ 103 (232)
+...|++|.|.
T Consensus 81 ~~~g~iD~li~nA 93 (256)
T PRK07889 81 EHVDGLDGVVHSI 93 (256)
T ss_pred HHcCCCcEEEEcc
Confidence 23578888875
No 455
>PRK07024 short chain dehydrogenase; Provisional
Probab=72.04 E-value=25 Score=27.94 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=43.7
Q ss_pred CEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897 32 DTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ 95 (232)
Q Consensus 32 ~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~ 95 (232)
.++|=.|++ |.++.. +++.+.+|+.++.+++.++...+..... .++.++.+|+.+.. .+.
T Consensus 3 ~~vlItGas-~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 3 LKVFITGAS-SGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CEEEEEcCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 356667754 444444 4447889999999887665544443221 26889999998742 124
Q ss_pred cceeeccc
Q 047897 96 FDLVVANI 103 (232)
Q Consensus 96 ~D~Vi~n~ 103 (232)
.|+++.|.
T Consensus 79 id~lv~~a 86 (257)
T PRK07024 79 PDVVIANA 86 (257)
T ss_pred CCEEEECC
Confidence 68888764
No 456
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.97 E-value=12 Score=29.04 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCCCEEEEEcC-CccHhHHHHHhcCCeEEEEEcCHHHHHH
Q 047897 29 NPDDTVLEIGP-GTGNLTLKLLEVSKKVHAIEIDERMVEI 67 (232)
Q Consensus 29 ~~~~~vLDiG~-G~G~~t~~l~~~~~~v~~vD~~~~~~~~ 67 (232)
..+..+|=+|. =+|..+..++...++|+.+|+.|.+-..
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~ 82 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGF 82 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhc
Confidence 35678999997 4788888888888999999999977544
No 457
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=71.92 E-value=19 Score=31.73 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHH-HHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeec
Q 047897 30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERM-VEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVA 101 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~ 101 (232)
+..+||=.| |+|.++..+++ .+.+|+++|..... .+..... .+. .+++++.+|..+.....+|.|+.
T Consensus 119 ~~mkILVTG-atGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~---~~~-~~~~~~~~Di~~~~~~~~D~ViH 190 (436)
T PLN02166 119 KRLRIVVTG-GAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHL---FGN-PRFELIRHDVVEPILLEVDQIYH 190 (436)
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhh---ccC-CceEEEECccccccccCCCEEEE
Confidence 345676655 78888777766 57899999964211 1111111 111 36889999987755556787774
No 458
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.81 E-value=2 Score=32.27 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADS 75 (232)
Q Consensus 18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~ 75 (232)
++-.++...+.-.|.+|||+|.|.-.++-.+.. ....|...|-+...++..++....+
T Consensus 17 la~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 17 LAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred HHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 333344433333467899999998777766655 5688999999999988877766543
No 459
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=71.68 E-value=17 Score=30.89 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=38.8
Q ss_pred HHHHhcCCCCCCEEEEEcCCccHhHHHH-Hh--cCCeEEEEEcCHHHHHHHHHH
Q 047897 21 SIVRKSSINPDDTVLEIGPGTGNLTLKL-LE--VSKKVHAIEIDERMVEILNRR 71 (232)
Q Consensus 21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l-~~--~~~~v~~vD~~~~~~~~a~~~ 71 (232)
..++.++.++|++|.=+|||-=.++.-. +. ...+++|+|++++-++.|++.
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 4567778889999999999754444333 33 467999999999999888775
No 460
>PRK06138 short chain dehydrogenase; Provisional
Probab=70.95 E-value=33 Score=26.96 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCccHhHH----HHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTL----KLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
++.++|=.|++ |.++. .+++.+.+|++++.+.+..+...+... .+ .++.++.+|+.+.. .
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--GRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35577888874 44444 444578899999988766554444443 22 46889999997752 1
Q ss_pred CCcceeecccC
Q 047897 94 PQFDLVVANIP 104 (232)
Q Consensus 94 ~~~D~Vi~n~p 104 (232)
+.+|.|+.+..
T Consensus 80 ~~id~vi~~ag 90 (252)
T PRK06138 80 GRLDVLVNNAG 90 (252)
T ss_pred CCCCEEEECCC
Confidence 35788887643
No 461
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=70.70 E-value=15 Score=30.95 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=40.8
Q ss_pred CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHH-HHHHHh---hcCCCccEEEEEcCCCCCC-----CCCcc
Q 047897 31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEI-LNRRAA---DSGFHDRLNVISKDALKTE-----FPQFD 97 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~-a~~~~~---~~~~~~~~~~~~~D~~~~~-----~~~~D 97 (232)
+.+||=.| |+|.++..+++ .+.+|+++|........ ...... .... .++.++.+|+.+.. ...+|
T Consensus 15 ~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Di~d~~~l~~~~~~~d 92 (348)
T PRK15181 15 PKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQW-SRFIFIQGDIRKFTDCQKACKNVD 92 (348)
T ss_pred CCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccC-CceEEEEccCCCHHHHHHHhhCCC
Confidence 35677666 77877766665 57899999975432111 111111 1111 36889999998753 23567
Q ss_pred eeec
Q 047897 98 LVVA 101 (232)
Q Consensus 98 ~Vi~ 101 (232)
.||.
T Consensus 93 ~ViH 96 (348)
T PRK15181 93 YVLH 96 (348)
T ss_pred EEEE
Confidence 7664
No 462
>PRK06701 short chain dehydrogenase; Provisional
Probab=70.50 E-value=29 Score=28.45 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCH-HHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDE-RMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
++.++|=.|++.|. ++..+++.+.+|+.+..++ ...+.....+...+ .++.++.+|+.+.. .
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45678888865542 4445555789999998764 23333334443333 46888999987642 1
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
...|.||.|.
T Consensus 123 ~~iD~lI~~A 132 (290)
T PRK06701 123 GRLDILVNNA 132 (290)
T ss_pred CCCCEEEECC
Confidence 2468888664
No 463
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.23 E-value=11 Score=33.30 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=47.6
Q ss_pred CCEEEEEcCCccHhHH--HHHhcCCeEEEEEcCHHHH-HHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCccc
Q 047897 31 DDTVLEIGPGTGNLTL--KLLEVSKKVHAIEIDERMV-EILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGI 107 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~--~l~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~ 107 (232)
+.+|+=+|-|..+.+. .|.+.+..|++.|.++... ....+.+...| +.+..++........+|+|+..+-...
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~~~~~~~~~~~~dlVV~Spgi~~ 89 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELG----VKLVLGENYLDKLDGFDVIFKTPSMRI 89 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCC----CEEEeCCCChHHhccCCEEEECCCCCC
Confidence 5678889988875443 5666889999999875322 11112233333 555555432222246788887765555
Q ss_pred chHHHHHH
Q 047897 108 SSPLVAKL 115 (232)
Q Consensus 108 ~~~~l~~~ 115 (232)
..+.+...
T Consensus 90 ~~p~~~~a 97 (458)
T PRK01710 90 DSPELVKA 97 (458)
T ss_pred CchHHHHH
Confidence 55655443
No 464
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=69.81 E-value=15 Score=30.07 Aligned_cols=74 Identities=27% Similarity=0.415 Sum_probs=42.2
Q ss_pred EEEEcCCc--cHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcccchHH
Q 047897 34 VLEIGPGT--GNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPL 111 (232)
Q Consensus 34 vLDiG~G~--G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~~~~ 111 (232)
|.=||+|. |.++..+.+.+.+|+++|.+++.++.+.+. |. +.....+. + .....|+|+..+|-......
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~-~~~~aDlVilavp~~~~~~~ 73 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL-S-LLKDCDLVILALPIGLLLPP 73 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h-HhcCCCEEEEcCCHHHHHHH
Confidence 44567664 345555655778999999999877766543 21 11111111 1 12356888877775554444
Q ss_pred HHHHh
Q 047897 112 VAKLV 116 (232)
Q Consensus 112 l~~~~ 116 (232)
+..+.
T Consensus 74 ~~~l~ 78 (279)
T PRK07417 74 SEQLI 78 (279)
T ss_pred HHHHH
Confidence 44443
No 465
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.80 E-value=48 Score=25.49 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=51.5
Q ss_pred CcccccCCHHHHHHHHHhc--CCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEE
Q 047897 8 KGQHILTNQRVLDSIVRKS--SINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLN 82 (232)
Q Consensus 8 ~gq~fl~~~~~~~~i~~~~--~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 82 (232)
+.|-|. ++.+++.++... ....+.+|--+.|-+=.+-...-. ..-+|+..|.|..+ ...| -+
T Consensus 50 lsqfwy-~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRF--------e~yg----~e 116 (217)
T KOG3350|consen 50 LSQFWY-SDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRF--------ELYG----TE 116 (217)
T ss_pred hhhhhc-CHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhH--------Hhcc----ce
Confidence 445444 356666655432 224566777777766442222222 35689999998754 3333 45
Q ss_pred EEEcCCCC---CCC---CCcceeecccCcccc
Q 047897 83 VISKDALK---TEF---PQFDLVVANIPYGIS 108 (232)
Q Consensus 83 ~~~~D~~~---~~~---~~~D~Vi~n~p~~~~ 108 (232)
|++-|... +|. ..||+|+++|||=..
T Consensus 117 FvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~ 148 (217)
T KOG3350|consen 117 FVFYDYNCPLDLPDELKAHFDIIVADPPFLSE 148 (217)
T ss_pred eEEeccCCCCCCHHHHHhcccEEEeCCccccc
Confidence 66666643 332 269999999998543
No 466
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=69.70 E-value=29 Score=27.11 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCccHh--HHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeeccc
Q 047897 30 PDDTVLEIGPGTGNL--TLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANI 103 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~--t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~ 103 (232)
.+.+||=||.|.=+. ...+++.+++|+.++.+.. +..++.... ++++++.++........+|+|+..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~--~~l~~l~~~----~~i~~~~~~~~~~dl~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE--SELTLLAEQ----GGITWLARCFDADILEGAFLVIAAT 77 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC--HHHHHHHHc----CCEEEEeCCCCHHHhCCcEEEEECC
Confidence 467899999997653 3455667889998865432 222222221 4689999887755556788888643
No 467
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.59 E-value=35 Score=28.16 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcC-HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKTE-----------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----------~~ 94 (232)
++.++|=.|++.|. ++..+++.+.+|+.++.+ ....+.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~~g 88 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVGLG 88 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 46688888876653 555556678899999874 333333333343333 46888999987641 23
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|.+|.|.
T Consensus 89 ~iD~li~nA 97 (306)
T PRK07792 89 GLDIVVNNA 97 (306)
T ss_pred CCCEEEECC
Confidence 578888764
No 468
>PLN02253 xanthoxin dehydrogenase
Probab=69.34 E-value=31 Score=27.79 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
.+.++|=.|+ +|.++..+ ++.+.+|+.++.+++..+...+.... ..++.++.+|+.+.. .
T Consensus 17 ~~k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 17 LGKVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 3567887775 44444444 44789999999887665544443321 146889999998752 1
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
+..|.+|.|.
T Consensus 93 g~id~li~~A 102 (280)
T PLN02253 93 GTLDIMVNNA 102 (280)
T ss_pred CCCCEEEECC
Confidence 2468888764
No 469
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=69.18 E-value=12 Score=28.50 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=27.2
Q ss_pred EEEEcCCccH--hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh
Q 047897 34 VLEIGPGTGN--LTLKLLEVSKKVHAIEIDERMVEILNRRAAD 74 (232)
Q Consensus 34 vLDiG~G~G~--~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 74 (232)
|-=||+|+=+ ++..++..+.+|+.+|.+++.++.+++.+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 3346665422 3444445789999999999999888877654
No 470
>PRK08324 short chain dehydrogenase; Validated
Probab=69.10 E-value=28 Score=32.50 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCcc--H-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTG--N-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G--~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
.++++|=.|++.| . ++..+++.+.+|++++.++.-.+.+.+.+... .++.++.+|+.+.. .+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4678888876433 2 33334447889999999987766655544322 36888999987642 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
.+|+||.|.-
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 5788887753
No 471
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=69.06 E-value=30 Score=28.14 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=39.7
Q ss_pred CCEEEEEcCCccHhHHHHHhcCCeEEEEEcC-HHHHHHHHHHHhhcCC--CccEEEEEcCCC
Q 047897 31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGF--HDRLNVISKDAL 89 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~--~~~~~~~~~D~~ 89 (232)
...|+.+|||.=.-...+... ..+.-+|+| |+.++.-++.+...+. .++..++..|+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 456999999987766666433 246677777 5567766666665432 357888888886
No 472
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=68.93 E-value=32 Score=25.05 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=45.9
Q ss_pred EEEEEcCCccH---hHHHHHhc-CCeEEEEEcC--HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 33 TVLEIGPGTGN---LTLKLLEV-SKKVHAIEID--ERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 33 ~vLDiG~G~G~---~t~~l~~~-~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
++|=.|++.|. ++..+++. +..|+.+..+ .+..+.....+...+ .++.++.+|+.+.. ..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 45667766552 55555556 5578888888 555665555555444 57999999987652 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
+.|.+|.|..
T Consensus 80 ~ld~li~~ag 89 (167)
T PF00106_consen 80 PLDILINNAG 89 (167)
T ss_dssp SESEEEEECS
T ss_pred cccccccccc
Confidence 5788887743
No 473
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=68.89 E-value=21 Score=30.36 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=32.6
Q ss_pred HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897 24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR 70 (232)
Q Consensus 24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~ 70 (232)
+...++++++||=.|+|. |.++..+++ .+. +|+++|.+++-.+.+++
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 345667888888888643 334444555 565 69999999988877754
No 474
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.67 E-value=33 Score=27.25 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=42.5
Q ss_pred CCEEEEEcCCc-cHhH----HHHHhcCCeEEEEEcC------------HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897 31 DDTVLEIGPGT-GNLT----LKLLEVSKKVHAIEID------------ERMVEILNRRAADSGFHDRLNVISKDALKTE- 92 (232)
Q Consensus 31 ~~~vLDiG~G~-G~~t----~~l~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~- 92 (232)
+..+|=.|++. |.++ ..+++.+.+|+.++.+ +.... +.+.....+ .++.++.+|+.+..
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG--VRCEHMEIDLSQPYA 81 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC--CeEEEEECCCCCHHH
Confidence 45788888753 3444 4444578899998765 22222 223333333 46889999987743
Q ss_pred -----------CCCcceeeccc
Q 047897 93 -----------FPQFDLVVANI 103 (232)
Q Consensus 93 -----------~~~~D~Vi~n~ 103 (232)
....|.|+.+.
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECC
Confidence 13578888764
No 475
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=68.63 E-value=37 Score=28.13 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------P 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------~ 94 (232)
.+.++|=.|+..|. ++..+++.+.+|+.++.+.+-.+.+.+.+...+ .++.++.+|+.+... +
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP--DSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC--CceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 45678877764431 334444478899999988776655544443221 468889999876531 2
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|++|.|.
T Consensus 83 ~iD~li~nA 91 (322)
T PRK07453 83 PLDALVCNA 91 (322)
T ss_pred CccEEEECC
Confidence 478888774
No 476
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=68.46 E-value=7 Score=32.69 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCC----CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHH
Q 047897 17 RVLDSIVRKSSI----NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65 (232)
Q Consensus 17 ~~~~~i~~~~~~----~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~ 65 (232)
.+++.+-..... +..-++|=.|||.|.++..++..+..+-|-|.|--|+
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Ml 185 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFML 185 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHH
Confidence 345555544432 2345799999999999999999888888888887665
No 477
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.29 E-value=37 Score=27.50 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=43.3
Q ss_pred CCCEEEEEcCC-ccHh----HHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPG-TGNL----TLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G-~G~~----t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+..+|=.|++ ++.+ +..+++.+.+|+.+..++...+.+.+.....+ ....+.+|+.+..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHh
Confidence 45678888875 2344 44455578899888665433444444333322 3456888987642
Q ss_pred CCCcceeecccC
Q 047897 93 FPQFDLVVANIP 104 (232)
Q Consensus 93 ~~~~D~Vi~n~p 104 (232)
++..|++|.|.-
T Consensus 86 ~g~iD~lv~nAG 97 (272)
T PRK08159 86 WGKLDFVVHAIG 97 (272)
T ss_pred cCCCcEEEECCc
Confidence 235788888753
No 478
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.81 E-value=42 Score=26.85 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=43.4
Q ss_pred CCCEEEEEcCCc--c---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGPGT--G---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~G~--G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+..+|=.|++. | .++..+++.+.+|+..+.++...+.+++.....+ ...++.+|+.+..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g---~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG---CNFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC---CceEEEccCCCHHHHHHHHHHHHHH
Confidence 456788888865 3 2445556678899988877543333443333222 1235678887752
Q ss_pred CCCcceeecccC
Q 047897 93 FPQFDLVVANIP 104 (232)
Q Consensus 93 ~~~~D~Vi~n~p 104 (232)
+...|+++.|..
T Consensus 84 ~g~iDilVnnag 95 (260)
T PRK06603 84 WGSFDFLLHGMA 95 (260)
T ss_pred cCCccEEEEccc
Confidence 235788888754
No 479
>PRK08226 short chain dehydrogenase; Provisional
Probab=67.74 E-value=40 Score=26.76 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
.+.++|=.|++ |.++.. +++.+.+|+.++.++...+.+.+. ...+ .++.++.+|+.+.. +
T Consensus 5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADEL-CGRG--HRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-HHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45678877765 444444 444788999999887644444333 2222 45788899997642 1
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
...|.++.|.
T Consensus 81 ~~id~vi~~a 90 (263)
T PRK08226 81 GRIDILVNNA 90 (263)
T ss_pred CCCCEEEECC
Confidence 2468888764
No 480
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=67.57 E-value=21 Score=30.11 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=32.0
Q ss_pred hcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897 25 KSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR 70 (232)
Q Consensus 25 ~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~ 70 (232)
...+.++++||=.|+|. |.++..+++ .+. +|+++|.+++-.+.+++
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 44567889999888643 334444555 565 59999999988877754
No 481
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=67.42 E-value=37 Score=26.90 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=43.9
Q ss_pred CCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+.++|=.|+ +|.++..++ +.+.+|+.++.+.+..+...+.. + .++.++.+|+.+.. .+
T Consensus 6 ~~~vlItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTGA-ASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G--PAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 457787774 444444444 47889999999987665544433 1 35888899987642 12
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
..|.++.+.
T Consensus 80 ~id~li~~a 88 (257)
T PRK07067 80 GIDILFNNA 88 (257)
T ss_pred CCCEEEECC
Confidence 468887764
No 482
>PRK07074 short chain dehydrogenase; Provisional
Probab=67.35 E-value=39 Score=26.76 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=43.2
Q ss_pred CEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------CCc
Q 047897 32 DTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------PQF 96 (232)
Q Consensus 32 ~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~ 96 (232)
.++|=.|++.|. ++..+++.+.+|++++.++.-.+...+... + .++.++.+|+.+... +.+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG--D--ARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 456767765542 344444578899999998766554444332 1 358889999977531 236
Q ss_pred ceeeccc
Q 047897 97 DLVVANI 103 (232)
Q Consensus 97 D~Vi~n~ 103 (232)
|.|+.+.
T Consensus 79 d~vi~~a 85 (257)
T PRK07074 79 DVLVANA 85 (257)
T ss_pred CEEEECC
Confidence 8888765
No 483
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=67.18 E-value=17 Score=32.73 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcCCccHh-HHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897 28 INPDDTVLEIGPGTGNL-TLKLLE-VSKKVHAIEIDERMVEILNRR 71 (232)
Q Consensus 28 ~~~~~~vLDiG~G~G~~-t~~l~~-~~~~v~~vD~~~~~~~~a~~~ 71 (232)
..++++|+=+|||.=.+ +...++ .+..|+++|.+++..+.+++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 34689999999998654 444455 678999999999998887763
No 484
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=66.98 E-value=22 Score=23.09 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=31.4
Q ss_pred EcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897 37 IGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP 104 (232)
Q Consensus 37 iG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p 104 (232)
+-||+|.-+..++. ...++.+...+.. ..+-..|..+.....+|+|++..+
T Consensus 4 vvC~~G~~tS~ll~---------------~kl~~~f~~~~i~--~~~~~~~~~~~~~~~~DlIisT~~ 54 (86)
T cd05563 4 AVCGSGLGSSLMLK---------------MNVEKVLKELGIE--AEVEHTDLGSAKASSADIIVTSKD 54 (86)
T ss_pred EECCCCccHHHHHH---------------HHHHHHHHHCCCc--EEEEEecccccCCCCCCEEEEchh
Confidence 45777776655543 3455566555542 445556666655558899998765
No 485
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=66.92 E-value=48 Score=26.74 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+++.++==|.++|. .+..+++.+.+|+++....+.++.+...+.. ..+.....|+.+.. +.
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~~~~g 80 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALPEEFG 80 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHHHhhC
Confidence 34567777877773 6666777899999999999988877776643 35778888888752 23
Q ss_pred Ccceeeccc
Q 047897 95 QFDLVVANI 103 (232)
Q Consensus 95 ~~D~Vi~n~ 103 (232)
+.|+++.|-
T Consensus 81 ~iDiLvNNA 89 (246)
T COG4221 81 RIDILVNNA 89 (246)
T ss_pred cccEEEecC
Confidence 679999884
No 486
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.80 E-value=51 Score=25.84 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=41.9
Q ss_pred CCEEEEEcCCccHhHHHHH----hcCCeEEEE-EcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897 31 DDTVLEIGPGTGNLTLKLL----EVSKKVHAI-EIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F 93 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~----~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~ 93 (232)
+.++|=.|.+ |.++..++ +.+.+|+.+ ..++...+.+.+.....+ .++.++.+|+.+.. .
T Consensus 4 ~~~vlItGa~-g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 4 GKVALVTGSS-RGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4567766654 55555544 467787764 445554444444444333 46888999987653 1
Q ss_pred CCcceeeccc
Q 047897 94 PQFDLVVANI 103 (232)
Q Consensus 94 ~~~D~Vi~n~ 103 (232)
+..|+|+.|.
T Consensus 81 ~~id~vi~~a 90 (250)
T PRK08063 81 GRLDVFVNNA 90 (250)
T ss_pred CCCCEEEECC
Confidence 2468888875
No 487
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.73 E-value=46 Score=29.60 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCccH--hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCccc
Q 047897 30 PDDTVLEIGPGTGN--LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGI 107 (232)
Q Consensus 30 ~~~~vLDiG~G~G~--~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~ 107 (232)
.+.+|+=+|+|--. ++..+.+.+..|++.|.+.... .+.....| +.+..+.-.......+|+||.++-...
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~~~l~~~g----i~~~~~~~~~~~~~~~d~vV~Spgi~~ 86 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETAR---HKLIEVTG----VADISTAEASDQLDSFSLVVTSPGWRP 86 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHH---HHHHHhcC----cEEEeCCCchhHhcCCCEEEeCCCCCC
Confidence 45679999987655 4444555788999999765422 12222223 555554221122346788887764444
Q ss_pred chHHHH
Q 047897 108 SSPLVA 113 (232)
Q Consensus 108 ~~~~l~ 113 (232)
..+.+.
T Consensus 87 ~~p~~~ 92 (473)
T PRK00141 87 DSPLLV 92 (473)
T ss_pred CCHHHH
Confidence 545443
No 488
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=66.52 E-value=46 Score=26.43 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=38.3
Q ss_pred EEEEEcCCccH---hHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897 33 TVLEIGPGTGN---LTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91 (232)
Q Consensus 33 ~vLDiG~G~G~---~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~ 91 (232)
.+|=.|++.|. ++..+++ .+.+|+.+..+++.++.+.+.+.......++.++.+|+.+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~ 67 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAE 67 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCH
Confidence 35666765542 3444554 47889999998887776666554321123688899998764
No 489
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=66.46 E-value=2.1 Score=28.81 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=12.2
Q ss_pred EEEcCCccHhHHHHHh
Q 047897 35 LEIGPGTGNLTLKLLE 50 (232)
Q Consensus 35 LDiG~G~G~~t~~l~~ 50 (232)
+|||||.|...-+..+
T Consensus 7 IDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 7 IDIGCGAGNTMDAAFR 22 (124)
T ss_pred cccccCCCcchhhhhh
Confidence 7999999986555444
No 490
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=66.33 E-value=33 Score=30.00 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHhcCC-CCCCEEEEEcCCccH-hHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897 14 TNQRVLDSIVRKSSI-NPDDTVLEIGPGTGN-LTLKLLE-VSKKVHAIEIDERMVEILNR 70 (232)
Q Consensus 14 ~~~~~~~~i~~~~~~-~~~~~vLDiG~G~G~-~t~~l~~-~~~~v~~vD~~~~~~~~a~~ 70 (232)
+.+.+.+.+.+..+. .+|++|+=+|+|.=+ .....++ .+.+|+.+|.++.-.+.|++
T Consensus 184 ~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 184 CRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred hchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 445667777776654 478999999999733 3333444 67899999999987766654
No 491
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=66.29 E-value=70 Score=25.98 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=40.1
Q ss_pred CCCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897 29 NPDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP 104 (232)
Q Consensus 29 ~~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p 104 (232)
..+.+++=+|+| | .+..+ ++.+.+|+.++.+++-.+...+.+...+ .+.....+ +......|+||...|
T Consensus 115 ~~~k~vliiGaG-g-~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~---~~~~~~~~--~~~~~~~DivInatp 187 (270)
T TIGR00507 115 RPNQRVLIIGAG-G-AARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG---EIQAFSMD--ELPLHRVDLIINATS 187 (270)
T ss_pred ccCCEEEEEcCc-H-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC---ceEEechh--hhcccCccEEEECCC
Confidence 346789989987 3 33333 3356789999988765554444443322 12222222 122236799988776
Q ss_pred c
Q 047897 105 Y 105 (232)
Q Consensus 105 ~ 105 (232)
.
T Consensus 188 ~ 188 (270)
T TIGR00507 188 A 188 (270)
T ss_pred C
Confidence 4
No 492
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=66.28 E-value=49 Score=25.80 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=41.3
Q ss_pred EEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcC-CCccEEEEEcCCCCCC------------CCC
Q 047897 33 TVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSG-FHDRLNVISKDALKTE------------FPQ 95 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~~~------------~~~ 95 (232)
++|=.| |+|.++..+++ .+.+|++++.++. +.+.+...... ...++.++.+|+.+.. ...
T Consensus 4 ~vlItG-~s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 4 IALVTG-AKRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred EEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 566667 45555555544 6789999998854 22222221111 1246889999998742 124
Q ss_pred cceeecccC
Q 047897 96 FDLVVANIP 104 (232)
Q Consensus 96 ~D~Vi~n~p 104 (232)
+|.++.+.-
T Consensus 81 id~vi~~ag 89 (245)
T PRK12824 81 VDILVNNAG 89 (245)
T ss_pred CCEEEECCC
Confidence 788887653
No 493
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=66.25 E-value=49 Score=26.02 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=44.1
Q ss_pred EEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCc
Q 047897 33 TVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQF 96 (232)
Q Consensus 33 ~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~ 96 (232)
++|=.|+ +|.++..+ ++.+.+|+.++.++...+...+.+...+ .++.++.+|+.+.. .+..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 3555664 45544444 4478899999988766555544444433 46889999987642 1246
Q ss_pred ceeecccC
Q 047897 97 DLVVANIP 104 (232)
Q Consensus 97 D~Vi~n~p 104 (232)
|.|+.|..
T Consensus 79 d~vi~~ag 86 (254)
T TIGR02415 79 DVMVNNAG 86 (254)
T ss_pred CEEEECCC
Confidence 88887754
No 494
>PRK06484 short chain dehydrogenase; Validated
Probab=66.23 E-value=39 Score=30.13 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897 31 DDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ 95 (232)
Q Consensus 31 ~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~ 95 (232)
+..+|=.|++.| .++..+++.+.+|+.++.+++-++.+.+.. + .++..+.+|+.+.. ++.
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---G--DEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 456777776555 244445557889999999887666555433 2 34667888887652 135
Q ss_pred cceeeccc
Q 047897 96 FDLVVANI 103 (232)
Q Consensus 96 ~D~Vi~n~ 103 (232)
.|++|.|.
T Consensus 344 id~li~nA 351 (520)
T PRK06484 344 LDVLVNNA 351 (520)
T ss_pred CCEEEECC
Confidence 78888874
No 495
>PRK06179 short chain dehydrogenase; Provisional
Probab=66.23 E-value=21 Score=28.65 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=41.4
Q ss_pred CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP 94 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~ 94 (232)
+..++=.|+ +|.++..+++ .+.+|++++.++...+. . .+++++.+|+.+.. +.
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~-~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARAAP---------I-PGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------c-CCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 456777785 4555555544 78899999988643321 1 35788999987652 12
Q ss_pred CcceeecccC
Q 047897 95 QFDLVVANIP 104 (232)
Q Consensus 95 ~~D~Vi~n~p 104 (232)
..|+++.|.-
T Consensus 73 ~~d~li~~ag 82 (270)
T PRK06179 73 RIDVLVNNAG 82 (270)
T ss_pred CCCEEEECCC
Confidence 4688887754
No 496
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.19 E-value=36 Score=27.28 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=40.7
Q ss_pred CCCEEEEEcC-CccHh----HHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897 30 PDDTVLEIGP-GTGNL----TLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------ 92 (232)
Q Consensus 30 ~~~~vLDiG~-G~G~~----t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------ 92 (232)
.+.++|=.|+ |++.+ +..+++.+.+|+.++......+.+.+.....+ ...++.+|+.+..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SDLVFPCDVASDEQIDALFASLGQH 81 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcC---CcceeeccCCCHHHHHHHHHHHHHH
Confidence 4567888886 34444 44445578899887654322233333222222 2346778887652
Q ss_pred CCCcceeeccc
Q 047897 93 FPQFDLVVANI 103 (232)
Q Consensus 93 ~~~~D~Vi~n~ 103 (232)
+...|+++.|.
T Consensus 82 ~g~iD~lvnnA 92 (260)
T PRK06997 82 WDGLDGLVHSI 92 (260)
T ss_pred hCCCcEEEEcc
Confidence 23579888875
No 497
>PRK12744 short chain dehydrogenase; Provisional
Probab=65.96 E-value=50 Score=26.20 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=40.6
Q ss_pred CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcC----HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----------
Q 047897 31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEID----ERMVEILNRRAADSGFHDRLNVISKDALKTE---------- 92 (232)
Q Consensus 31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~----~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---------- 92 (232)
+.++|=.|++. .++..+++ .+.+|+.+..+ .+..+...+.+...+ .++.++.+|+.+..
T Consensus 8 ~k~vlItGa~~-gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 8 GKVVLIAGGAK-NLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CcEEEEECCCc-hHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence 56788788544 44444444 67787777543 233333333333223 36888999997642
Q ss_pred --CCCcceeeccc
Q 047897 93 --FPQFDLVVANI 103 (232)
Q Consensus 93 --~~~~D~Vi~n~ 103 (232)
.+..|.++.|.
T Consensus 85 ~~~~~id~li~~a 97 (257)
T PRK12744 85 AAFGRPDIAINTV 97 (257)
T ss_pred HhhCCCCEEEECC
Confidence 12568888764
No 498
>PRK06180 short chain dehydrogenase; Provisional
Probab=65.78 E-value=35 Score=27.51 Aligned_cols=68 Identities=21% Similarity=0.121 Sum_probs=43.5
Q ss_pred CCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------CC
Q 047897 31 DDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------PQ 95 (232)
Q Consensus 31 ~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------~~ 95 (232)
+..+|=.|++.|. ++..+++.+.+|++++.+++.++..... .+ .++.++.+|+.+... +.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL---HP--DRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---cC--CCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4568877775442 4444445788999999988765443332 11 468888999876531 24
Q ss_pred cceeeccc
Q 047897 96 FDLVVANI 103 (232)
Q Consensus 96 ~D~Vi~n~ 103 (232)
+|.|+.|.
T Consensus 79 ~d~vv~~a 86 (277)
T PRK06180 79 IDVLVNNA 86 (277)
T ss_pred CCEEEECC
Confidence 68888764
No 499
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=65.77 E-value=9.7 Score=35.75 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=39.2
Q ss_pred CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHh
Q 047897 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAA 73 (232)
Q Consensus 30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~ 73 (232)
.+..++|.-.|-|.+....++.++.|+++|.+|-+.-++++.++
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHh
Confidence 45679999999999999999999999999999998877777764
No 500
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=65.41 E-value=29 Score=27.80 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=32.9
Q ss_pred hcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCe-EEEEEcCHHHHHHHHHH
Q 047897 25 KSSINPDDTVLEIGPGT-GNLTLKLLE-VSKK-VHAIEIDERMVEILNRR 71 (232)
Q Consensus 25 ~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~-v~~vD~~~~~~~~a~~~ 71 (232)
...+.+++++|=.|+|. |..+..+++ .+.+ |++++.+++..+.+++.
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 45667888888888754 445555555 5666 99999988877766553
Done!