RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 047897
(232 letters)
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 291 bits (747), Expect = e-100
Identities = 131/225 (58%), Positives = 156/225 (69%), Gaps = 1/225 (0%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
+ F+K GQHIL N VLD IV K++I P DTVLEIGPGTGNLT KLL+++KKV AIEID
Sbjct: 8 MVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEID 67
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
RMV L +R +S +L VI DALKTEFP FD+ VAN+PY ISSPLV KL+
Sbjct: 68 PRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVANVPYQISSPLVFKLLAHRPL 127
Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
FR A L+ QKEFA RLLA PGD + RL+VN +L+ V +M VSK F P PKV+SSVV
Sbjct: 128 FRCAVLMFQKEFALRLLAQPGDELYCRLSVNTQLLCRVTHLMKVSKNSFNPPPKVESSVV 187
Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
I PK PDV+ +EW R CFS+KNKTL A FK K V++ L
Sbjct: 188 RIEPKNPPPDVDFEEWDGLLRICFSRKNKTLSAIFK-TKSVLQTL 231
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 247 bits (633), Expect = 5e-83
Identities = 101/229 (44%), Positives = 139/229 (60%), Gaps = 8/229 (3%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
+K GQ+ L ++ V+D IV ++I+P D VLEIGPG G LT LLE + +V AIEID R
Sbjct: 4 PNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRR 63
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFP---QFDLVVANIPYGISSPLVAKLVYGTK 120
+ E+L R A +D L VI+ DALK +FP Q VVAN+PY ISSP++ KL+
Sbjct: 64 LAEVLKERFA---PYDNLTVINGDALKFDFPSLAQPYKVVANLPYNISSPILFKLLEEKF 120
Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
+ L++QKE A RL+A PG ++ RL+V V+ ADVE V DV F P PKVDS+V
Sbjct: 121 IIQDMVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYADVEIVFDVPPSAFYPPPKVDSAV 180
Query: 181 VIIRPKAE--IPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLR 227
V + PK E P + +++ F + FS++ KTL K + E+L
Sbjct: 181 VRLVPKKEKPSPVKDEEKFFKFVKAAFSQRRKTLRNNLKNLFGLEEVLE 229
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 233 bits (596), Expect = 2e-77
Identities = 90/220 (40%), Positives = 125/220 (56%), Gaps = 7/220 (3%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
KS GQ+ L ++ V+ IV +++ D VLEIGPG G LT LL+ +KKV AIEID
Sbjct: 1 FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEID 60
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD---LVVANIPYGISSPLVAKLVYG 118
R+ E L + ++ L +I DALK + +F VV+N+PY ISSPL+ KL+
Sbjct: 61 RRLAERLRKLL---SLYENLEIIEGDALKVDLNEFPKQLKVVSNLPYNISSPLIFKLLEK 117
Query: 119 TKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDS 178
K FR A L++QKE A RL A PG ++ RL+V V+ A+VE V V F P PKVDS
Sbjct: 118 DK-FRLAVLMVQKEVAERLTAKPGSKDYGRLSVLVQYFANVEIVFKVPPSAFYPPPKVDS 176
Query: 179 SVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
+VV + P+ P + + + F ++ KTL K
Sbjct: 177 AVVRLIPRETFPVKDEALFEKLLKAAFQQRRKTLRNNLKN 216
>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 221 bits (567), Expect = 1e-72
Identities = 90/233 (38%), Positives = 128/233 (54%), Gaps = 12/233 (5%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
KS GQ+ L ++ +LD IV + P D VLEIGPG G LT LLE + KV A+EID
Sbjct: 14 HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEID 73
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD--LVVANIPYGISSPLVAKLVYGT 119
+ IL A D L +I DALK + + VVAN+PY I++PL+ L+
Sbjct: 74 RDLAPILAETFA----EDNLTIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLLEER 129
Query: 120 KSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSS 179
R +++QKE A R++A PG + RL+V V+ DVE V DV F+P PKVDS+
Sbjct: 130 DPIRDMVVMVQKEVAERIVAKPGSKAYGRLSVLVQYYCDVEKVFDVPPSAFVPPPKVDSA 189
Query: 180 VVIIRPKAE--IPDVNLDEWRAFTRTCFSKKNKTLGATFKQ----KKKVIELL 226
VV + P+ E +P + + + + F+++ KTL K K+K+ E L
Sbjct: 190 VVRLVPRKEPPVPVKDEELFFRVVKAAFAQRRKTLRNNLKNLFGSKEKLEEAL 242
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 215 bits (551), Expect = 9e-72
Identities = 81/172 (47%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF 77
V+D IVR +++ P DTVLEIGPG G LT +LLE +K+V AIEID R+ L + A
Sbjct: 1 VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLREKFAA--- 57
Query: 78 HDRLNVISKDALKTEFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFAR 135
D L VI DALK + P Q VV N+PY IS+P++ KL+ +FR A L++QKE AR
Sbjct: 58 ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVAR 117
Query: 136 RLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKA 187
RL A PG ++ RL+V ++ ADV+ + V F P PKVDS+VV + +
Sbjct: 118 RLAAKPGSKDYGRLSVLLQPYADVKILFKVPPSAFRPPPKVDSAVVRLERRP 169
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 209 bits (535), Expect = 4e-68
Identities = 90/208 (43%), Positives = 124/208 (59%), Gaps = 6/208 (2%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
K GQH L + RV+D IV + D VLEIGPG G LT +L + +KKV+AIE+D R+
Sbjct: 5 KKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLA 64
Query: 66 EILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSA 125
E L +G + +I DALK + P+F+ VV+N+PY ISSP+ KL+ F A
Sbjct: 65 EFLRDDEIAAG---NVEIIEGDALKVDLPEFNKVVSNLPYQISSPITFKLL--KHGFEPA 119
Query: 126 TLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRP 185
L+ QKEFA R++A PG E+ RL+V V+ ADVE V V F P PKVDS+VV + P
Sbjct: 120 VLMYQKEFAERMVAKPGTKEYGRLSVMVQYYADVEIVEKVPPGAFSPKPKVDSAVVRLTP 179
Query: 186 KAEIPDVNLDEWRA-FTRTCFSKKNKTL 212
+ +V +++ F + F + KTL
Sbjct: 180 REPKYEVYDEDFFDDFVKALFQHRRKTL 207
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 195 bits (499), Expect = 1e-62
Identities = 84/217 (38%), Positives = 130/217 (59%), Gaps = 8/217 (3%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
+ GQ+ LTN +V++ IV K+++ DTVLEIGPG G LT +L + +K+V AIEID R
Sbjct: 3 GRRKYGQNFLTNPKVINRIVDKANLQESDTVLEIGPGKGALTTELAKRAKQVVAIEIDPR 62
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFD--LVVANIPYGISSPLVAKLVYGTKS 121
+ + L + A H + V+ +D LK FP+ D LVV NIPY I++P+V KL++ ++
Sbjct: 63 LAKRLQEKLAL---HPNVEVVHQDFLKFSFPKDDPFLVVGNIPYNITTPIVKKLLFESRF 119
Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
L++QKEFARRLLA P +RL V + D++ V V + F P PKVDS++V
Sbjct: 120 GVKMLLVVQKEFARRLLARPKIR--SRLTVLTEPFTDIKLVAKVPRSSFRPPPKVDSALV 177
Query: 182 IIRPKAE-IPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
+ + +P +L ++ R F+ K ++L + +
Sbjct: 178 RLERRDTPLPVKDLKKYDYLVRKLFNGKGRSLFTSLR 214
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 64.8 bits (158), Expect = 1e-13
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 31 DDTVLEIGPGTGNLTLKLLEVSKK--VHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
D VL+ G G+G L V +E+D + RR A +G R+ V+ DA
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 89 LKTEF---PQFDLVVANIPYGISSP 110
+ FDLV+ N PYG +
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAG 85
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 55.8 bits (135), Expect = 2e-10
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
P VL+IG GTG+L ++L + +V +++ M+E+ A R+ + D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK-LALGPRITFVQGD 59
Query: 88 ALK--TEFPQFDLVVAN 102
A FD V
Sbjct: 60 APDALDLLEGFDAVFIG 76
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 53.9 bits (130), Expect = 9e-10
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 35 LEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHD--RLNVISKDALK 90
L+IG GTG L LLE + ++I +E R A G D R+ + DA+
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 91 TEFPQFDLVVAN 102
+ FD+VVA+
Sbjct: 61 LDPGSFDVVVAS 72
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 53.6 bits (129), Expect = 1e-09
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 33 TVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK- 90
VL++G GTG L L L +V ++I +E+ R+AA + D + V+ DA +
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELA-RKAAAALLADNVEVLKGDAEEL 59
Query: 91 --TEFPQFDLVVANIPYGISSPLVAKLV 116
FD+++++ P +A+ +
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDLARFL 87
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 49.3 bits (118), Expect = 4e-08
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 34 VLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92
+L++G GTG + L V ++I + +E+ R D G R V L E
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60
Query: 93 FPQFDLVVA 101
FDLV+
Sbjct: 61 EGSFDLVIC 69
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 49.9 bits (120), Expect = 2e-07
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVH--AIEIDERMVEILNRRAADSGFHDRLNVISKDAL- 89
+L++G G G L L L + ++K +EI E E+ R A + +R+ VI D
Sbjct: 47 RILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKE 106
Query: 90 ---KTEFPQFDLVVANIPY 105
F FDL++ N PY
Sbjct: 107 FLKALVFASFDLIICNPPY 125
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 49.3 bits (118), Expect = 3e-07
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 31 DDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
D +L++G G+G + + L + +V A++I + + A +G L V S D
Sbjct: 111 DKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQS-DL 169
Query: 89 LKTEFPQFDLVVANIPY 105
+ +FDL+V+N PY
Sbjct: 170 FEPLRGKFDLIVSNPPY 186
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 48.8 bits (117), Expect = 5e-07
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSK--KVHAIEIDERMVEILNRRAADSGFH 78
IV + I+P VLE G G+G LT L V V EI E + ++ G
Sbjct: 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG 145
Query: 79 DRLNVISKDALKTEFPQ-FDLVVANIP 104
DR+ + D + + D V ++P
Sbjct: 146 DRVTLKLGDVREGIDEEDVDAVFLDLP 172
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 46.7 bits (111), Expect = 1e-06
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFH----DR 80
+ VL++G GTG LT L E +V I+I E +E A G+ +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 81 LNVISKDALKTEFPQFDLVVAN 102
++ L+ E FD+V++N
Sbjct: 61 GDIEELPQLQLEDNSFDVVISN 82
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 47.2 bits (113), Expect = 2e-06
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTL--KLLEVSKKVHAIEIDERMVEILNRRAADSG 76
L+S+V+ P +TVL++G G+G L + L KKV ++ID V A +G
Sbjct: 154 LESLVK-----PGETVLDVGCGSGILAIAALKLGA-KKVVGVDIDPVAVRAAKENAELNG 207
Query: 77 FHDRLNVI-SKDALKTEFPQFDLVVANIPYGISSPLVA 113
+L V D + + D+VVANI ++ PL+
Sbjct: 208 VEAQLEVYLPGDLPEG---KADVVVANI---LADPLIE 239
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 46.9 bits (112), Expect = 2e-06
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLL-EVSK--KVHAIEIDERMVEILNRRA 72
+R ++ P D VL++G G GN +L V +V I+ E M+ + RA
Sbjct: 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA 64
Query: 73 ADSGFHDRLNVISKDALKTEFPQ--FDLVVA 101
A G + + DA FP FD V +
Sbjct: 65 AGLG--PNVEFVRGDADGLPFPDGSFDAVRS 93
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 46.4 bits (111), Expect = 3e-06
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92
+L+ G G G+L++ L KV A +I +MVE RA ++G + D L++
Sbjct: 66 RILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD-LESL 124
Query: 93 FPQFDLVVA 101
+FD VV
Sbjct: 125 LGRFDTVVC 133
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 45.5 bits (109), Expect = 5e-06
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEID--ER 63
S G H + ++ ++ + P D VL++ GTG+L + L + V K + +D E
Sbjct: 32 SFGLHRVWRRKT----IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG 87
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGI 107
M+ + + D G + + DA FP FD V I +G+
Sbjct: 88 MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAV--TIAFGL 131
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 46.0 bits (109), Expect = 6e-06
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLT--LKLLEVSKKVHAIEIDERMVEILNRRAADSG 76
L+ + K D V+++G G+G L+ L +K V I+ID VE + A +
Sbjct: 153 LEDLDLK-----DKNVIDVGCGSGILSIAALKLGAAK-VVGIDIDPLAVESARKNAELNQ 206
Query: 77 FHDRLNVISKDALKTEFPQFDLVVANI 103
DRL V + + D++VANI
Sbjct: 207 VSDRLQVKLIYLEQPIEGKADVIVANI 233
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 44.6 bits (106), Expect = 1e-05
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID--ERM 64
S G H L + + + I P D VL++ GTG++ L L + + +D E M
Sbjct: 32 SFGLHRLWRRAL----ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESM 87
Query: 65 VEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGI 107
+E+ + G + + + DA FP FD V I +G+
Sbjct: 88 LEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVT--ISFGL 129
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 44.2 bits (105), Expect = 1e-05
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 3 FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEI 60
F + +G + T + + + K P D + +IG GTG++T++ S +V AIE
Sbjct: 8 LFERDEGGPM-TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIER 66
Query: 61 DERMVEILNRRAADSGFHDRLNVISKDALKT 91
DE +E++ R AA G D L V+ DA +
Sbjct: 67 DEEALELIERNAARFGV-DNLEVVEGDAPEA 96
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 41.1 bits (97), Expect = 3e-05
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 35 LEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF 93
L++G GTG L L +V +++ M+ + +R + DA F
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-------APRKFVVGDAEDLPF 53
Query: 94 P--QFDLVVAN 102
P FD+VV++
Sbjct: 54 PDESFDVVVSS 64
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 43.2 bits (103), Expect = 4e-05
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 18 VLDSIVRKSSINPDDTVLEIGPGTGN--LTLKLLEVSKKVHAIEIDERMVEILNRRAADS 75
+++ + + VL++G G+G L L +V A++I + + RR A
Sbjct: 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVA-RRNAKH 154
Query: 76 GFHDRLNVISKDALKT-EFPQFDLVVANIPY 105
G R+ + D + +FDL+V+N PY
Sbjct: 155 GLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 42.9 bits (101), Expect = 4e-05
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92
VL+ G GTG L+++L + V A++I E+MV++ RA + D L
Sbjct: 58 RVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117
Query: 93 FPQFDLVVA 101
+FD+VV
Sbjct: 118 -GEFDIVVC 125
>gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional.
Length = 232
Score = 43.1 bits (102), Expect = 4e-05
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKK------VHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
T+L+IG G G+L + L +++ V AI+ D R V G
Sbjct: 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--TFRQAVS 120
Query: 87 DALKTEFPQFDLVVAN 102
D L E +FD+V +N
Sbjct: 121 DELVAEGERFDVVTSN 136
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 42.6 bits (101), Expect = 5e-05
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
+ P D VLEIG G+G L + +V +IE E + E R G+ + + V D
Sbjct: 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGD 128
Query: 88 ALK--TEFPQFDLVV 100
K E +D ++
Sbjct: 129 GSKGWPEEAPYDRII 143
>gnl|CDD|226472 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid
metabolism].
Length = 194
Score = 41.6 bits (98), Expect = 9e-05
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 23/109 (21%)
Query: 26 SSINPDDT--VLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDR 80
S I+P+ VLE+GPGTG +T +L + + AIE V LN+ +
Sbjct: 42 SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL------YPG 95
Query: 81 LNVISKDALKTEF-------PQFDLVV-----ANIPYGISSPLVAKLVY 117
+N+I+ DA FD V+ N P ++ L+Y
Sbjct: 96 VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLY 144
>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function
prediction only].
Length = 252
Score = 41.0 bits (96), Expect = 2e-04
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
+DT ++G G+G L++ +++V AIE D + + G V+ DA
Sbjct: 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARD 91
Query: 91 TEFPQFDLVVA 101
+F D+V+
Sbjct: 92 YDFENADVVIC 102
>gnl|CDD|223194 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA
replication, recombination, and repair].
Length = 381
Score = 41.1 bits (97), Expect = 2e-04
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 53 KKVHAIEIDERMVEI--LNRRAADSGFHDRLNVISKDA--LKTEFPQFDLVVANIPYGI- 107
++ +ID R +E N RAA G D + DA LK ++ +V++N PYG
Sbjct: 255 PIIYGSDIDPRHIEGAKANARAA--GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER 312
Query: 108 --SSPLVAKL 115
S LVAKL
Sbjct: 313 LGSEALVAKL 322
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 40.3 bits (95), Expect = 3e-04
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDER 63
S G H L +R V+ + VL++ GTG+L ++L + + KV ++
Sbjct: 20 SFGLHRLWRRRA----VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE 75
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGI 107
M+E+ +++ + I DA F FD V I +G+
Sbjct: 76 MLEVAKKKSEL---PLNIEFIQADAEALPFEDNSFDAV--TIAFGL 116
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 40.0 bits (94), Expect = 3e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 33 TVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91
TVL++G GTG L + + +V A++ID +EI RA + + D +
Sbjct: 48 TVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIA--RANAEELLGDVEFVVADV--S 103
Query: 92 EFP-QFDLVVANIPYGI 107
+F +FD V+ N P+G
Sbjct: 104 DFRGKFDTVIMNPPFGS 120
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 40.5 bits (96), Expect = 3e-04
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 22/91 (24%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVE--ILNRRAA 73
L+ +V P TVL++G G+G L KL +KKV A++ID + VE N
Sbjct: 113 LEKLVL-----PGKTVLDVGCGSGILAIAAAKLG--AKKVLAVDIDPQAVEAARENAE-- 163
Query: 74 DSGFHDRLN-VISKDALKTEFPQFDLVVANI 103
LN V L + D++VANI
Sbjct: 164 -------LNGVELNVYLPQGDLKADVIVANI 187
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 40.3 bits (95), Expect = 4e-04
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKL-LEVSKKVHAIEIDERMVEILNRRAADSGF 77
LD I+ K + P T+L+IG G G L + E V + + E + +R A G
Sbjct: 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL 120
Query: 78 HDRLNVISKDALKTEFPQFDLVVA 101
D + V +D + FD +V+
Sbjct: 121 EDNVEVRLQD-YRDFEEPFDRIVS 143
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 39.8 bits (93), Expect = 4e-04
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 32 DTVLEIGPGTGNLTLK---LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
D +L+IG GTG++T++ L+ + KV+A++ DE+ + + R A G + + +I +A
Sbjct: 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA 101
Query: 89 ---LKTEFPQFD 97
L T +FD
Sbjct: 102 PEILFTINEKFD 113
>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and
metabolism].
Length = 282
Score = 39.7 bits (93), Expect = 6e-04
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 34 VLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVEILNRR----AADSGFHDRLNVISK 86
VL IG G G LK L V +++ +EID ++E L R+ + R+ +I
Sbjct: 80 VLIIGGGDGGTLREVLKHLPV-ERITMVEIDPAVIE-LARKYLPEPSGGADDPRVEIIID 137
Query: 87 DALK--TEFP-QFDLVVANI--PYGISSPLVAKLVYG 118
D ++ + +FD+++ + P G + L + Y
Sbjct: 138 DGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYE 174
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 39.6 bits (92), Expect = 7e-04
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNR 70
I ++L I +N + VL+IG G G + E VH ++I E+MV I
Sbjct: 38 IEATTKILSDI----ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKL 93
Query: 71 RAADSGFHDRLNVISKDALKTEFPQ--FDLV 99
R +D +++ + D LK +FP+ FD++
Sbjct: 94 RNSDK---NKIEFEANDILKKDFPENTFDMI 121
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 38.7 bits (91), Expect = 8e-04
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVSKK--VHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
VL++G G G L L + S V ++I+ R +E A +G + V
Sbjct: 30 PLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL-ENGEVFWS 88
Query: 87 DALKTEFP-QFDLVVANIP 104
D P +FDL+++N P
Sbjct: 89 DLYSAVEPGKFDLIISNPP 107
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 38.3 bits (90), Expect = 0.001
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDR-LNVISK 86
D VLE+G G+G + + + KKV ++I+ VE A + + + VI
Sbjct: 21 DKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRS 80
Query: 87 DALK--TEFPQFDLVVANIPY 105
D + FD+++ N PY
Sbjct: 81 DLFEPFRGDK-FDVILFNPPY 100
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 38.5 bits (90), Expect = 0.001
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 6 KSKGQHIL--TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
+ K H + + + R P VL++G G G L+ L + V I+ E+
Sbjct: 33 EFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEK 92
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVV 100
+E+ A +SG + + + L + QFD+V
Sbjct: 93 PIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVT 129
>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase. The
gene hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. This
model represents an archaeal and eukaryotic protein
family that lacks an N-terminal domain found in HemK and
its eubacterial homologs. It is found in a single copy
in the first six completed archaeal and eukaryotic
genomes [Unknown function, Enzymes of unknown
specificity].
Length = 179
Score = 37.9 bits (88), Expect = 0.002
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
+ PDD VLEIG GTG + ++L K + +I+ V+ L A + L+V+ D
Sbjct: 18 LKPDD-VLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG--LDVVMTD 74
Query: 88 ALKTEFPQFDLVVANIPY 105
K +FD+++ N PY
Sbjct: 75 LFKGVRGKFDVILFNPPY 92
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 37.7 bits (88), Expect = 0.002
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 27 SINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNV 83
++ +LEIG G L + ++ IE DE EI A++G DR+ +
Sbjct: 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIEL 115
Query: 84 I-SKDAL----KTEFPQFDLV 99
+ DAL + FDLV
Sbjct: 116 LLGGDALDVLSRLLDGSFDLV 136
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 37.3 bits (87), Expect = 0.004
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTL--KLLEVSKKVHAIEIDERMVEILNRRAADSG 76
L+ +++K TVL++G G+G L + L KKV ++ID + VE A +G
Sbjct: 156 LEKLLKK-----GKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNG 209
Query: 77 FH--DRLNVISKDALKTEFPQFDLVVANI 103
+ + P FD++VANI
Sbjct: 210 VELLVQAKGFLLLEVPENGP-FDVIVANI 237
>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This
group contains proteins identified as sorbitol
dehydrogenases and other sugar dehydrogenases of the
medium-chain dehydrogenase/reductase family (MDR), which
includes zinc-dependent alcohol dehydrogenase and
related proteins. Sorbitol and aldose reductase are
NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose. Sorbitol
dehydrogenase is tetrameric and has a single catalytic
zinc per subunit. NAD(P)(H)-dependent oxidoreductases
are the major enzymes in the interconversion of alcohols
and aldehydes, or ketones. Related proteins include
threonine dehydrogenase, formaldehyde dehydrogenase, and
butanediol dehydrogenase. The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit. Horse
liver alcohol dehydrogenase is a dimeric enzyme and each
subunit has two domains. The NAD binding domain is in a
Rossmann fold and the catalytic domain contains a zinc
ion to which substrates bind. There is a cleft between
the domains that closes upon formation of the ternary
complex.
Length = 343
Score = 37.2 bits (87), Expect = 0.004
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 23 VRKSSINPDDTVLEIGPGT-GNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHD 79
VR + I DTV+ IG GT G L ++ L++ K+V A++ID+ + + A + G D
Sbjct: 152 VRLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAV----ARELGADD 207
Query: 80 RLNVISKDALK----TEFPQFDLVV 100
+N +D K TE DLV+
Sbjct: 208 TINPKEEDVEKVRELTEGRGADLVI 232
>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020. This
domain is probably a methylase. It is associated with
the THUMP domain that also occurs with RNA modification
domains.
Length = 172
Score = 35.7 bits (83), Expect = 0.008
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 21 SIVRKSSINPDDTVLEIGPGTGNLTLKL-LEVSKKVH--AIEIDERMVE--ILNRRAADS 75
++V + P D +L+ G+G + ++ L + +ID RMV+ +N A
Sbjct: 19 AMVNLAGWKPGDPLLDPMCGSGTILIEAALMGANIAPLYGSDIDWRMVQGARINAENA-- 76
Query: 76 GFHDRLNVISKDALKTEFP--QFDLVVANIPYGIS 108
G D++ + DA K D +V N PYGI
Sbjct: 77 GVGDKIEFVQADAAKLPLLNGSVDAIVTNPPYGIR 111
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In
many organisms, this protein is fused to the CbiE
subunit. The fused protein, when found in organisms
catalyzing the oxidative version of the cobalamin
biosynthesis pathway, is called CobL [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 124
Score = 35.0 bits (81), Expect = 0.009
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEI 67
+T + V + K + P D + +IG GTG++T +E ++ +V+AIE + +++
Sbjct: 2 MTKREVRALTLSKLRLRPGDVLWDIGAGTGSVT---IEAARLVPNGRVYAIERNPEALDL 58
Query: 68 LNRRAADSGFHDRLNVISKDA 88
+ R G + ++ DA
Sbjct: 59 IERNLRRFG-VSNIVIVEGDA 78
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 35.9 bits (83), Expect = 0.009
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDER 63
S G H L D ++ + + L++ GTG+ T L + S KV ++I+E
Sbjct: 28 SFGIHRLWK----DFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINEN 83
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQ--FDLVVANIPYGI 107
M++ ++A + G ++ + + +A + F FD+V I +G+
Sbjct: 84 MLKEGEKKAKEEGKYN-IEFLQGNAEELPFEDDSFDIV--TISFGL 126
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 35.8 bits (83), Expect = 0.012
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
+ VLEIG GTG L V ++E+D + A +G+ V++
Sbjct: 105 VEDGHRVLEIGTGTGYSAALLCHRLGDDNVTSVEVDPGLAARAASALAAAGYAPT--VVT 162
Query: 86 KDALKTEFPQ--FDLVVA-----NIPYG 106
D L P+ +D ++A +P
Sbjct: 163 GDGLLGHPPRAPYDRIIATCAVRRVPPA 190
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 35.1 bits (82), Expect = 0.015
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 33 TVLEIGPGTGN--LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD--- 87
VL++G G+G L L +V A++I + + + AA G D + + D
Sbjct: 90 RVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-DNVEFLQSDWFE 148
Query: 88 ALKTEFPQFDLVVANIPY 105
L +FDL+V+N PY
Sbjct: 149 PLPGG--KFDLIVSNPPY 164
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 154
Score = 34.4 bits (79), Expect = 0.020
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
+ P VL+IG GTG L L E V ++ V I
Sbjct: 20 LKPGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLI 59
>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases. The gene
hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. Both
E. coli and H. influenzae have two members rather than
one. The members from the Mycoplasmas have an additional
C-terminal domain [Protein fate, Protein modification
and repair].
Length = 284
Score = 35.0 bits (81), Expect = 0.021
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 26 SSINPDDTVLEIGPGTG--NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNV 83
S NP +L++G G+G L L + +V A++I + + A + R+
Sbjct: 110 ISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEF 169
Query: 84 ISKDALKT-EFPQFDLVVANIPY 105
I + + + D++V+N PY
Sbjct: 170 IQSNLFEPLAGQKIDIIVSNPPY 192
>gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase/tRNA
(m7G46) methyltransferase; Reviewed.
Length = 506
Score = 35.2 bits (81), Expect = 0.022
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLL-EV-SKKVHAIEIDERM 64
K + + S +N +LE+G G+G + + LL E+ + V A +I
Sbjct: 119 KKQLNPCFRGNDISSNCNDKFLN----ILELGTGSGCIAISLLCELPNANVIATDISLDA 174
Query: 65 VEILNRRAADSGFHDRLNVISKDAL-KTEFPQFDLVVANIPY 105
+E+ A DR+ +I + E +FD +V+N PY
Sbjct: 175 IEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPY 216
>gnl|CDD|149273 pfam08123, DOT1, Histone methylation protein DOT1. The DOT1 domain
regulates gene expression by methylating histone H3. H3
methylation by DOT1 has been shown to be required for
the DNA damage checkpoint in yeast.
Length = 205
Score = 34.2 bits (79), Expect = 0.030
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKL-LEVSKKV--------HAIEIDERMVEILN 69
L ++ K ++ P D +++G G GN L+ LE K+ +A + E E
Sbjct: 31 LSDVLDKCNLGPQDVFVDLGSGVGNCVLQAALEFGCKLSFGCEIMDNASNLAELQDEEFK 90
Query: 70 RRAADSGF-HDRLNVISKDALKTEF-----PQFDLVVAN 102
+R G ++ I L E P+ D+++ N
Sbjct: 91 KRCKLFGKKLGKIEFIRGSFLDNERVEEIIPEADVILVN 129
>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
[General function prediction only].
Length = 287
Score = 34.4 bits (79), Expect = 0.036
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
L ++ K+ + P +L++G GTG L +++ ++ ++I E M+ A + G +
Sbjct: 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAK----AHEKGLY 169
Query: 79 DRLNVI-SKDALKTEFPQ-FDLVVA 101
D L V + L+ + FDL+VA
Sbjct: 170 DTLYVAEAVLFLEDLTQERFDLIVA 194
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 33.9 bits (78), Expect = 0.061
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 28 INPDDTVLEIGPGTGNLTL--KLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
+ P VLEIG G N L +L+ S +V ++IDE + + A +G+ ++ V+
Sbjct: 80 VEPGMRVLEIGSGGYNAALLAELVGPSGEVTTVDIDEDVTDRARACLAAAGYP-QVTVVL 138
Query: 86 KDALK--TEFPQFDLVVA 101
DA E +D ++
Sbjct: 139 ADAEAGVPELAPYDRIIV 156
>gnl|CDD|235139 PRK03612, PRK03612, spermidine synthase; Provisional.
Length = 521
Score = 33.7 bits (78), Expect = 0.063
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 26/102 (25%)
Query: 32 DTVLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEI---------LNRRAADSGF 77
VL +G G G L L EV K +V +++D M E+ LN A
Sbjct: 299 RRVLVLGGGDG---LALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGA----L 351
Query: 78 HD-RLNVISKDA---LKTEFPQFDLVVANIPYGISSPLVAKL 115
D R+ V++ DA L+ +FD+++ ++P S+P + KL
Sbjct: 352 DDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDP-SNPALGKL 392
>gnl|CDD|218506 pfam05219, DREV, DREV methyltransferase. This family contains DREV
protein homologues from several eukaryotes. The function
of this protein is unknown. However, these proteins
appear to be related to other methyltransferases
(Bateman A pers obs).
Length = 265
Score = 33.3 bits (76), Expect = 0.071
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
T+L++G G G +TL++ ++V+A E+ M + L ++ NV+++ +
Sbjct: 95 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK--------NYNVLTEIEWQ 146
Query: 91 TEFPQFDLVVA 101
DL++
Sbjct: 147 ETDVNLDLILC 157
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 33.4 bits (77), Expect = 0.073
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
+ VL++G G G L L L + S K+ ++++ R VE + A +G + S
Sbjct: 157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASN 216
Query: 87 DALKTEFPQFDLVVANIP 104
E +FDL+++N P
Sbjct: 217 LYEPVE-GKFDLIISNPP 233
>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
Length = 677
Score = 33.7 bits (77), Expect = 0.075
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 32 DTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
DT++++G G G + L ++E K+++ I+I E +++ L ++ + NVI DA
Sbjct: 420 DTIVDVGAG-GGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE--GRSWNVIKGDA 476
Query: 89 L 89
+
Sbjct: 477 I 477
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 33.3 bits (73), Expect = 0.083
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 34 VLEIGPGTGNLTL--KLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91
VL+IG GTG L L +L V +++ M+ + RA +G ++ + DAL
Sbjct: 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGG 110
Query: 92 EFP-----QFDLVVANIPYGISSPLVA 113
P FDLV++ + + P A
Sbjct: 111 VLPFEDSASFDLVISLLVLHLLPPAKA 137
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 32.7 bits (75), Expect = 0.10
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRA 72
+ ++L + + P VL++ G+G L + + V A++I R V A
Sbjct: 20 EDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNA 79
Query: 73 ADSGFHDRLNVISKD-ALKTEFPQFDLVVANIPYGISSPLVA 113
+G V D A EF FD+VV+N PY + P
Sbjct: 80 LLAGVDVD--VRRGDWARAVEFRPFDVVVSNPPYVPAPPDAP 119
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 33.1 bits (76), Expect = 0.12
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
+ VL++ G G L L + KKVH +EI VE AA +G D + I+ DA
Sbjct: 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAE 351
Query: 90 K-----TEFPQFDLVVANIP 104
+ E + D+VV + P
Sbjct: 352 EFTPAWWEGYKPDVVVVDPP 371
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 32.9 bits (75), Expect = 0.14
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 3 FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDE 62
FF + GQ N++++D + + ++ V++ G G TL L + +K V IE+
Sbjct: 269 FFQVNSGQ----NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVP 324
Query: 63 RMVEILNRRA 72
VE + A
Sbjct: 325 ESVEKAQQNA 334
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 143
Score = 31.4 bits (72), Expect = 0.18
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 29 NPDDTVLEIGPGTGNLT------LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLN 82
TV++ G G G L L + +V I+ +VE N RA GF+ R++
Sbjct: 24 TGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKANARAQKLGFNKRMS 83
Query: 83 -----VISKDALKTEFPQFDLVVA 101
+ D+V A
Sbjct: 84 FLEGTIAGATVSARLPDPVDVVTA 107
>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase. Putative
L-iditol 2-dehydrogenase based on annotation of some
members in this subgroup. L-iditol 2-dehydrogenase
catalyzes the NAD+-dependent conversion of L-iditol to
L-sorbose in fructose and mannose metabolism. This
enzyme is related to sorbitol dehydrogenase, alcohol
dehydrogenase, and other medium chain
dehydrogenase/reductases. The zinc-dependent alcohol
dehydrogenase (ADH-Zn)-like family of proteins is a
diverse group of proteins related to the first
identified member, class I mammalian ADH. This group is
also called the medium chain dehydrogenases/reductase
family (MDR) to highlight its broad range of activities
and to distinguish from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal GroES-like catalytic
domain. The MDR group contains a host of activities,
including the founding alcohol dehydrogenase (ADH),
quinone reductase, sorbitol dehydrogenase, formaldehyde
dehydrogenase, butanediol DH, ketose reductase, cinnamyl
reductase, and numerous others. The zinc-dependent
alcohol dehydrogenases (ADHs) catalyze the
NAD(P)(H)-dependent interconversion of alcohols to
aldehydes or ketones. Active site zinc has a catalytic
role, while structural zinc aids in stability. ADH-like
proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
generally have 2 tightly bound zinc atoms per subunit.
The active site zinc is coordinated by a histidine, two
cysteines, and a water molecule. The second zinc seems
to play a structural role, affects subunit interactions,
and is typically coordinated by 4 cysteines.
Length = 343
Score = 32.2 bits (74), Expect = 0.19
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 23 VRKSSINPDDTVLEIGPG-TGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHD 79
RK+ I P DTVL IG G G L L + S +KV +++E +E A G
Sbjct: 158 QRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEF----AKKLGADY 213
Query: 80 RLNVISKDALK-----TEFPQFDLVVANIP 104
++ +D ++ T+ D+V+
Sbjct: 214 TIDAAEEDLVEKVRELTDGRGADVVIVATG 243
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 31.1 bits (71), Expect = 0.39
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 34 VLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA--LKT 91
VL+IG GTG LT LL+ + I D + + S + I DA L
Sbjct: 38 VLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSE---NVQFICGDAEKLPL 94
Query: 92 EFPQFDLVVAN 102
E FDL+V+N
Sbjct: 95 EDSSFDLIVSN 105
>gnl|CDD|117255 pfam08682, DUF1780, Protein of unknown function (DUF1780). This is
a family of uncharacterized proteins. The structure of a
hypothetical protein from Pseudomonas aeruginosa has
shown it to adopt an alpha/beta fold.
Length = 208
Score = 30.7 bits (69), Expect = 0.40
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 50 EVSKKVHAIEIDERMVEILNRRA---ADSGF-HDRLNVISKDALKTEFPQFDLVVANIPY 105
K++ A E+ R+ L ++A + G H L++I+ ALK F+
Sbjct: 103 AKPKRIAAAELLARLAPTLRKKAHNYQERGIDHGELDIIAFAALKRAVLDFN-------- 154
Query: 106 GISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADV 159
S Y + +RS +L+ FAR L A P EF R + ++ D
Sbjct: 155 ---SHFPPPTEYLRQGWRSLSLV-GPTFARVLFAHPDAPEFLRANLGRSILFDA 204
>gnl|CDD|217158 pfam02636, Methyltransf_28, Putative
S-adenosyl-L-methionine-dependent methyltransferase.
This family is a putative S-adenosyl-L-methionine
(SAM)-dependent methyltransferase. In eukaryotes it
plays a role in mitochondrial complex I activity.
Length = 241
Score = 31.1 bits (71), Expect = 0.42
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKK----------VHAIEIDERMVEILNRRAADSGFHDRLN 82
++EIG G G L +L +K H +EI + E R A G L
Sbjct: 20 RLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPALRERQKERLA--GSAPSLA 77
Query: 83 VISKDALKTEFPQFDLVVAN 102
+ D L E P ++AN
Sbjct: 78 IRWLDELP-ELPFPGFILAN 96
>gnl|CDD|224460 COG1543, COG1543, Uncharacterized conserved protein [Function
unknown].
Length = 504
Score = 31.2 bits (71), Expect = 0.43
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 62 ERMVEILNRRAADSGFHDR-LNVISKDALKTE 92
+RM+ + + +A +G DR LN +++ L
Sbjct: 407 DRMIALAAKYSAPTGLEDRALNQAARELLLAV 438
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 30.7 bits (70), Expect = 0.50
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 27 SINPDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF 77
+ P +TVL++G G G L + + + KV +++ M+ A +G+
Sbjct: 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY 127
>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family. This
group shares the zinc coordination sites of the
zinc-dependent alcohol dehydrogenases. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of an
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 306
Score = 30.7 bits (70), Expect = 0.57
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 21 SIVRKSSINPDDTVLEIGPGT 41
++ +S I P DTV+ GPG
Sbjct: 155 AVAERSGIRPGDTVVVFGPGP 175
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 30.4 bits (69), Expect = 0.61
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 21 SIVRKSSINPDDTVLEIGPGT-GNLTLKLL-EVSKKVHAIEIDERMVEILNRRAADSGFH 78
++ R + P DTVL +G G G L +L +V + + +E+ AD
Sbjct: 125 ALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVID 184
Query: 79 DRLNVISKDALKTEFPQFDLVV 100
+ + ++ T D+V+
Sbjct: 185 YKEEDLEEELRLTGGGGADVVI 206
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This family
consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation of
homoserine to yield an acyl-L-homoserine. This reaction
is catalyzed by the products of the metXW genes and is
equivalent to the first step in enterobacteria,
gram-positive bacteria and fungi, except that in these
microorganisms the reaction is catalyzed by a single
polypeptide (the product of the metA gene in Escherichia
coli and the met5 gene product in Neurospora crassa). In
Pseudomonas putida, as in gram-positive bacteria and
certain fungi, the second and third steps are a direct
sulfhydrylation that converts the O-acyl-L-homoserine
into homocysteine and further methylation to yield
methionine. The latter reaction can be mediated by
either of the two methionine synthetases present in the
cells.
Length = 193
Score = 30.1 bits (68), Expect = 0.72
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHA--IEIDERMVEILNRRAADSGFHDRLNVIS 85
I P VL++G G G+L L LL+ K+V IE+D V G L+VI
Sbjct: 11 IPPGSRVLDLGCGDGSL-LYLLQEEKQVDGRGIELDAAGVA----ECVAKG----LSVIQ 61
Query: 86 KDALK--TEFP--QFDLVVAN 102
DA K FP FD V+ +
Sbjct: 62 GDADKGLEHFPDKSFDYVILS 82
>gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional.
Length = 702
Score = 30.5 bits (70), Expect = 0.85
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 50 EVSKKVHAIEIDERMVEIL--NRRAADSGFHDRLNVISKDA--LKTEFPQFD--LVVANI 103
E+ K + +ID R+++ N R A G + + KD LK P+ LV++N
Sbjct: 254 ELPSKFYGSDIDPRVIQAARKNARRA--GVAELITFEVKDVADLKNPLPKGPTGLVISNP 311
Query: 104 PYG 106
PYG
Sbjct: 312 PYG 314
>gnl|CDD|216745 pfam01861, DUF43, Protein of unknown function DUF43. This family
includes archaebacterial proteins of unknown function.
All the members are 350-400 amino acids long.
Length = 243
Score = 29.7 bits (67), Expect = 1.0
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 44 LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ-----FDL 98
L L + K++ ++IDER+++ + R A + G ++ D L+ P+ FD+
Sbjct: 59 LAAALTGLPKRIAVVDIDERLIKFIERVAKEEGL--KIEAFVHD-LRNPLPEDLKHKFDV 115
Query: 99 VVANIPYGI 107
+ + P +
Sbjct: 116 FITDPPETV 124
>gnl|CDD|224484 COG1568, COG1568, Predicted methyltransferases [General function
prediction only].
Length = 354
Score = 29.7 bits (67), Expect = 1.2
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 44 LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ-----FDL 98
+ L L + K++ ++IDER+++ + + A + G+++ + D L+ P+ FD+
Sbjct: 167 IALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFD-LRNPLPEDLKRKFDV 224
Query: 99 VVANIPYGI 107
+ + P I
Sbjct: 225 FITDPPETI 233
>gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase.
Length = 340
Score = 29.7 bits (67), Expect = 1.4
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDD-----TVLEIGPGTGNLTLKLLEVSKK----VH 56
S+G H R+++ + + + DD ++++G G G + L ++K V
Sbjct: 89 ASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYL---ARKYGANVK 145
Query: 57 AIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLV 99
I + N AA G D+++ DAL F QFDLV
Sbjct: 146 GITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLV 190
>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 29.1 bits (66), Expect = 1.4
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 53 KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-----TEFPQFDLVVANIPYG 106
+V +E D + V+IL G V+ DAL+ FDLV + PY
Sbjct: 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA 125
>gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein. This family is
found exclusively in the Archaea [Hypothetical proteins,
Conserved].
Length = 329
Score = 29.3 bits (66), Expect = 1.6
Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 16/143 (11%)
Query: 23 VRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVE--ILN-RRAADSGFHD 79
V + + D VL+ GTG ++ + KV +ID +MV +N F
Sbjct: 175 VNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFF- 233
Query: 80 RLNVISKDALKTEFP--QFDLVVANIPYGISSP----LVAKLVYGTKSFRSATLLLQKEF 133
V DA K D + + PYG S+ + L +S +L+ E
Sbjct: 234 ---VKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLY--ERSLEEFHEVLKSE- 287
Query: 134 ARRLLASPGDSEFNRLAVNVKLV 156
+ A P + LA + V
Sbjct: 288 GWIVYAVPTRIDLESLAEDAFRV 310
>gnl|CDD|220246 pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase.
RNA cap guanine-N2 methyltransferases such as
Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2
catalyze methylation of the exocyclic N2 amine of
7-methylguanosine.
Length = 165
Score = 28.8 bits (65), Expect = 1.7
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD----- 87
+L++ G G T++ V V I+I+ + A G DR+ I D
Sbjct: 3 IILDVFCGAGGNTIQFANVFCSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELL 62
Query: 88 -ALKTEFPQFDLVVANIPYG 106
LK +D V + P+G
Sbjct: 63 AKLKFGKIPYDCVFLSPPWG 82
>gnl|CDD|180961 PRK07402, PRK07402, precorrin-6B methylase; Provisional.
Length = 196
Score = 28.8 bits (65), Expect = 1.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 30 PDDTVLEIGPGTGNLTLK--LLEVSKKVHAIEIDERMVEILNR 70
PD + +IG GTG + ++ LL +V AIE DE +V ++ R
Sbjct: 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR 82
>gnl|CDD|223471 COG0394, Wzb, Protein-tyrosine-phosphatase [Signal transduction
mechanisms].
Length = 139
Score = 28.4 bits (64), Expect = 2.0
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 60 IDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVA 101
D R VE+L D H SK + +F +FDL++
Sbjct: 46 PDPRAVEVLAEHGIDISGH-----RSKQLTEEDFDEFDLIIT 82
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 28.6 bits (65), Expect = 2.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 27 SINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
+ P D VLEIG G+G L + ++V ++E + + RR G H NV +
Sbjct: 75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLH---NVSVR 131
>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase. This is a
family of putative methyltransferases. The aligned
region contains the GXGXG S-AdoMet binding site
suggesting a putative methyltransferase activity.
Length = 198
Score = 28.4 bits (64), Expect = 2.4
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 29 NPDDTVLEIGPGTGNLTLKL--LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
N LEIG G G+ + + K IEI V+ ++ L ++
Sbjct: 19 NEQPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCG 78
Query: 87 DALK 90
DA+K
Sbjct: 79 DAMK 82
>gnl|CDD|238063 cd00115, LMWPc, Low molecular weight phosphatase family;.
Length = 141
Score = 28.0 bits (63), Expect = 2.7
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 59 EIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVA 101
D R + +L D H ++ + +F +FDL++
Sbjct: 45 RPDPRAIAVLAEHGIDISGH-----RARQLTEDDFDEFDLIIT 82
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 28.3 bits (63), Expect = 3.2
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
+ P VLEIG G+G L E+ V +IE + E RR G NVI
Sbjct: 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD---NVI 131
Query: 85 SKDALKT----EFPQFD-LVVANIPYGISSPLVAKLVYGTK 120
T +D + V I L+ +L G
Sbjct: 132 VIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGI 172
>gnl|CDD|215319 PLN02585, PLN02585, magnesium protoporphyrin IX methyltransferase.
Length = 315
Score = 28.3 bits (63), Expect = 3.3
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNR 70
H T ++VL + S+ TV + G GTG+L + L V A +I MV R
Sbjct: 126 HAQTVEKVLLWLAEDGSLA-GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAER 184
Query: 71 RA 72
RA
Sbjct: 185 RA 186
>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU. Members
of this protein family are the
S-adenosylmethionine-depenedent C-20 methyltransferase
BchU, part of the pathway of bacteriochlorophyll c
production in photosynthetic green sulfur bacteria. The
position modified by this enzyme represents the
difference between bacteriochlorophylls c and d; strains
lacking this protein can only produced
bacteriochlorophyll d [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 306
Score = 28.5 bits (63), Expect = 3.3
Identities = 21/119 (17%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAAD 74
+ + ++ ++ ++ ++++G G G+++ +L+ ++ + ++ ++++N AA+
Sbjct: 135 KFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAE 194
Query: 75 SGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEF 133
G DR+ I+ D K +P+ D V L +++Y + +T++ +K F
Sbjct: 195 KGVADRMRGIAVDIYKESYPEADAV-----------LFCRILYSANE-QLSTIMCKKAF 241
>gnl|CDD|177639 PHA03411, PHA03411, putative methyltransferase; Provisional.
Length = 279
Score = 28.1 bits (62), Expect = 3.7
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 34 VLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91
VL++ G G L+ +L K K+ +E++ I R ++ + I+ D +
Sbjct: 68 VLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEW------ITSDVFEF 121
Query: 92 EF-PQFDLVVANIPYGISSPLVAKLV--YGTKSFRSATLLLQKEFA 134
E +FD+V++N P+G + K V Y F + L ++FA
Sbjct: 122 ESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFA 167
>gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA
replication, recombination, and repair].
Length = 347
Score = 28.1 bits (63), Expect = 3.7
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 26 SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNR-----RAADSGFHDR 80
+ + + VL+ GTG + ++ + +V +IDERMV D
Sbjct: 193 ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV 252
Query: 81 LNVISKDALKTEFPQ--FDLVVANIPYGISS 109
L DA D + + PYG S+
Sbjct: 253 L-----DATNLPLRDNSVDAIATDPPYGRST 278
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 27.7 bits (62), Expect = 4.8
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
+ P VLEIG G+G LT + V +IE +VEI R G NVI
Sbjct: 71 LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGLE---NVI 127
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family
consist of Cyclopropane-fatty-acyl-phospholipid synthase
or CFA synthase EC:2.1.1.79 this enzyme catalyze the
reaction: S-adenosyl-L-methionine + phospholipid
olefinic fatty acid <=> S-adenosyl-L-homocysteine +
phospholipid cyclopropane fatty acid.
Length = 273
Score = 27.3 bits (61), Expect = 6.3
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAAD 74
Q LD I+ K + P T+L+IG G G L + E V + + + + +R A
Sbjct: 48 QAKLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQRVAA 107
Query: 75 SGFHDRLNVISKDALKTEFP-QFDLVV 100
G ++ V+ +D +F FD +V
Sbjct: 108 EGLQRKVEVLLQDY--RDFDEPFDRIV 132
>gnl|CDD|183177 PRK11524, PRK11524, putative methyltransferase; Provisional.
Length = 284
Score = 27.4 bits (61), Expect = 6.7
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLL--EVSKKVHAIEIDERMVEILNRR 71
L I+ SS NP D VL+ P G+ T + +K IEI+ +++ RR
Sbjct: 198 LKRIILASS-NPGDIVLD--PFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRR 249
>gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS)
enzymes.
Length = 224
Score = 27.0 bits (60), Expect = 7.5
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 34 VLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91
VL+ G G G+ + L E ++H I E+ R G R+ + +D+ K
Sbjct: 3 VLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD 62
Query: 92 EFPQFDLVV 100
FP +V
Sbjct: 63 PFPDTYDLV 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.382
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,672,029
Number of extensions: 1112922
Number of successful extensions: 1095
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 114
Length of query: 232
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 138
Effective length of database: 6,768,326
Effective search space: 934028988
Effective search space used: 934028988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)