RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047897
(232 letters)
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 308 bits (791), Expect = e-106
Identities = 106/221 (47%), Positives = 142/221 (64%)
Query: 5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERM 64
+ GQHIL N +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D R+
Sbjct: 3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRL 62
Query: 65 VEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRS 124
V L++R + +L V+ D LKT+ P FD VAN+PY ISSP V KL+ FR
Sbjct: 63 VAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRC 122
Query: 125 ATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIR 184
A L+ Q+EFA RL+A PGD + RL++N +L+A V+ +M V K +F P PKV+SSVV I
Sbjct: 123 AILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIE 182
Query: 185 PKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIEL 225
PK P +N EW R F +KNKTL A FK L
Sbjct: 183 PKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLL 223
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 300 bits (769), Expect = e-103
Identities = 106/228 (46%), Positives = 140/228 (61%), Gaps = 1/228 (0%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
+GQH+L N +LD I+ + I D VLEIG GTGNLT+KLL ++KKV I+ID R
Sbjct: 16 NLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSR 75
Query: 64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
M+ + +R G ++ L V DA+KT FP+FD+ ANIPY ISSPL+ KL+ F+
Sbjct: 76 MISEVKKRCLYEG-YNNLEVYEGDAIKTVFPKFDVCTANIPYKISSPLIFKLISHRPLFK 134
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
A L+ QKEFA R+LA+ GDS ++RL +NVKL V V +V++ F P PKVDS +V +
Sbjct: 135 CAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKL 194
Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLSKQ 231
PK N DEW R CFS+K KTL A FK+ + L K
Sbjct: 195 IPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEHNYKN 242
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 240 bits (615), Expect = 7e-80
Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 8/227 (3%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
K GQ L ++ ++ V +++ DD VLEIG G G LT +L + +KKV+ IEID
Sbjct: 22 FKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEID 81
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL--VVANIPYGISSPLVAKLVYGT 119
+ + N+ ++ + +I DALK + + D VVAN+PY ISSP+ KL+
Sbjct: 82 KSLEPYANKLKEL---YNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--K 136
Query: 120 KSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSS 179
+ F A L+ Q EFA+R++A+ G ++ RL+V V+ ADVE V V F P PKV S+
Sbjct: 137 RGFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSA 196
Query: 180 VVIIRPKAEIPDV-NLDEWRAFTRTCFSKKNKTLGATFKQKKKVIEL 225
+V I+P + N + + F R F +NK++ K +
Sbjct: 197 IVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNY 243
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 205 bits (525), Expect = 9e-67
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 12/235 (5%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
+ K GQH L + VL IV DT++EIGPG G LT LL + +EID
Sbjct: 1 MPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEID 60
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLV 116
+V L ++ + + DAL+ +F VV N+PY IS+PL+ L
Sbjct: 61 RDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKTDKPLRVVGNLPYNISTPLLFHLF 117
Query: 117 YGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKV 176
+LQKE RR+ A G ++ RL+V + D ++ VS + F P P+V
Sbjct: 118 SQIHCIEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRV 177
Query: 177 DSSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFKQKKKVIELLRL 228
+S+++ + P+ V + + FS + KT+G K+ + L
Sbjct: 178 ESAIIRLIPRHNFTPVAKNL-DQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLL 231
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 204 bits (522), Expect = 1e-66
Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 16/224 (7%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
Q+ +T++ +D I+ +N D + EIG G G+ TL+L++ V AIEID ++
Sbjct: 6 IKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLC 65
Query: 66 EILNRRAADSGFHDRLNVISKDALKTEFPQFD--LVVANIPYGISSPLVAKLVYGTKSFR 123
+ + D HD V++KD L+ +FP+ + NIPY IS+ ++ K+V+
Sbjct: 66 KTTENKLVD---HDNFQVLNKDILQFKFPKNQSYKIFGNIPYNISTDIIRKIVF-DSIAD 121
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
L+++ FA+RLL + LA+ + D+ + V + F P PKV+SS++ +
Sbjct: 122 EIYLIVEYGFAKRLLNTKR-----SLALFLMAEVDISILSMVPREYFHPKPKVNSSLIRL 176
Query: 184 RPKAE-IPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
K I + ++ F +K+ K + K + L
Sbjct: 177 NRKKSRISHKDKQKYNYFVMKWVNKEYKKI----FTKNQFNNSL 216
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 204 bits (522), Expect = 2e-66
Identities = 65/218 (29%), Positives = 101/218 (46%), Gaps = 12/218 (5%)
Query: 10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
Q+ L +Q V+DSIV + ++EIGPG LT + E ++ IE+D + L
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 70 RRAADSGFHDRLNVISKDALKTEFPQFDL-------VVANIPYGISSPLVAKLVYGTKSF 122
+L + +DA+ F + V N+PY IS+PL+ L T +
Sbjct: 61 THPFL---GPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAI 117
Query: 123 RSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVI 182
+LQKE RL+A P + RL+V + +V V++V F P PKVDS+VV
Sbjct: 118 ADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVR 177
Query: 183 IRPKAEIPDVNLDEWRAF--TRTCFSKKNKTLGATFKQ 218
+ P A +P D T F+++ KT+ +
Sbjct: 178 LVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGN 215
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 202 bits (515), Expect = 2e-65
Identities = 55/226 (24%), Positives = 116/226 (51%), Gaps = 13/226 (5%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
Q+ LT+++VL+ I+++ ++ DTV EIG G G+LT KL ++SK+V +IE+D +
Sbjct: 5 IKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLF 64
Query: 66 EILNRRAADSGFHDRLNVISKDALKTEFPQFD--LVVANIPYGISSPLVAKLVYGTKSFR 123
+ + + + R+ +I +D L+ +FP +V NIPY +S+ ++ K+V+
Sbjct: 65 NLSSEKLKL---NTRVTLIHQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVF-ESRAS 120
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
L++++ F +R L L + + ++ ++ + F P PKV+S ++ +
Sbjct: 121 DIYLIVEEGFYKRTLDIHR-----TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKL 175
Query: 184 RPK-AEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRL 228
++PD + F +++ + L T Q + ++ ++
Sbjct: 176 TRHTTDVPDKYWKLYTYFVSKWVNREYRQL-FTKNQFHQAMKHAKV 220
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 200 bits (512), Expect = 1e-64
Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 21/240 (8%)
Query: 4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIE 59
K GQ+ L + V+D+IV + ++EIGPG G LT ++ +HA+E
Sbjct: 16 ARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVE 75
Query: 60 IDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL--------VVANIPYGISSPL 111
+D ++ L +R F + L + + DAL +F ++ N+PY ISSPL
Sbjct: 76 LDRDLIGRLEQR-----FGELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNISSPL 130
Query: 112 VAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFL 171
+ L+ +LQ E R++A PG F+RL+V ++ ++ ++DV F
Sbjct: 131 LFHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLIDVPPESFQ 190
Query: 172 PCPKVDSSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFKQKKKVIELLRL 228
P PKVDS++V + P A ++ + FS++ K L T + +++ L
Sbjct: 191 PPPKVDSAIVRMIPHAP-HELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDLVDFDAL 249
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 196 bits (502), Expect = 4e-63
Identities = 71/219 (32%), Positives = 103/219 (47%), Gaps = 12/219 (5%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
+F K GQ+ L ++ L IV + V E+GPG G LT LLE +V AIE D
Sbjct: 19 LFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVTAIEKD 77
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD---LVVANIPYGISSPLVAKLVYG 118
R+ +L + + ++ +DAL + + L+VAN+PY I++PLV +L+
Sbjct: 78 LRLRPVLEETLS----GLPVRLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLL-K 132
Query: 119 TKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDS 178
T F L+QKE A R+ A P + L + V A E + D+ F P PKV S
Sbjct: 133 TGRFARLVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWS 192
Query: 179 SVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
S+V + P + D L F K+ KTL
Sbjct: 193 SLVRLTPTGALDDPGL---FRLVEAAFGKRRKTLLNALA 228
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 195 bits (499), Expect = 6e-63
Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 12/222 (5%)
Query: 2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEI 60
+ KS GQH+L ++ VL I + +I +TV+E+G GTGNLT LL+ KK++ IE+
Sbjct: 3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62
Query: 61 DERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD---LVVANIPYGISSPLVAKLVY 117
D MVE L +RL VI++DA K F VV N+PY ++S ++ VY
Sbjct: 63 DREMVENLKSI-----GDERLEVINEDASKFPFCSLGKELKVVGNLPYNVASLIIENTVY 117
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
A ++QKE A +L G + L+V V+ DV +VM V R F+P PKV
Sbjct: 118 NKDCVPLAVFMVQKEVAEKL---QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQ 174
Query: 178 SSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQK 219
S+V+ + + P +L ++ F F + K L ++
Sbjct: 175 SAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIPEE 216
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 151 bits (382), Expect = 2e-44
Identities = 45/272 (16%), Positives = 79/272 (29%), Gaps = 64/272 (23%)
Query: 5 HKSKGQHILTNQRVLDSIVRKSSINP------DDTVLEIGPGTGNLTLKLLEVS--KKVH 56
G L N V + I K + + VL++ PG G + ++
Sbjct: 27 KFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYS 86
Query: 57 AIEIDERMVEILNRRAADSGFHDRLNVISKDALK---------------TEFPQFD---- 97
+E + + LN + L ++ +D E D
Sbjct: 87 LLEKRSSLYKFLNAKFEG----SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHIND 142
Query: 98 --LVVANIPYGISSPLVAKLVYGTKSFRSA--------TLLLQKEFARRLLASPGDSEFN 147
L VAN+ S L+ + + + L + AR+LLA PG +
Sbjct: 143 KFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLLARPGMHSRS 202
Query: 148 RLAVNVKLVADVEFV---------------------MDVSKRDFLPCPKVDSSVVIIRPK 186
+ +V + D + + + S + P ++V + P
Sbjct: 203 KCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMDPI 262
Query: 187 AEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
D +D W TR K L
Sbjct: 263 DFDFD--VDNWDYVTRHLMILKRTPLNTVMDS 292
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 67.2 bits (164), Expect = 8e-14
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSG 76
+ I+ VLE G GTGNLT KLL + V+ IE M I +
Sbjct: 32 AHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--- 88
Query: 77 FHDRLNVISKDALKTEFP-QFDLVVAN 102
++ D L E P D +V+
Sbjct: 89 --KEFSITEGDFLSFEVPTSIDTIVST 113
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 68.0 bits (166), Expect = 8e-14
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 3 FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEID 61
FF + Q + + L ++ ++ + +IG GTG T+ L V+ +V ++
Sbjct: 19 FFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFL 78
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
++I NR A SG +R+ I F + DL+ +
Sbjct: 79 SGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSE 121
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 64.9 bits (158), Expect = 7e-13
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDR 80
+ + + D + +IG GTG TL L + V ++ I++ +EI N A + DR
Sbjct: 38 VSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADR 97
Query: 81 LNVISKDALKTEFP--QFDLVVAN 102
+ I+ F + DL+ +
Sbjct: 98 VKGITGSMDNLPFQNEELDLIWSE 121
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 64.4 bits (157), Expect = 2e-12
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAAD 74
R+ D ++ + D VL++G G G ++L +V I I V N RA
Sbjct: 47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATA 106
Query: 75 SGFHDRLNVISKDALKTEFP--QFDLVVA 101
+G +R+ DA+ F FD V A
Sbjct: 107 AGLANRVTFSYADAMDLPFEDASFDAVWA 135
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 62.1 bits (151), Expect = 5e-12
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFH 78
++I+ + I T ++IG G G L++ L + + A++ + M EI + AD+ +
Sbjct: 34 ENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN 92
Query: 79 DRLNVISKDALKTEFP--QFDLVVAN 102
DR+ ++ D DL+V+
Sbjct: 93 DRIQIVQGDVHNIPIEDNYADLIVSR 118
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 62.2 bits (151), Expect = 8e-12
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 1 YIFFHKSKGQHILTNQ--RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK--KVH 56
Y+ + + L+ Q + + + P VLE G G G T+ L + + ++
Sbjct: 6 YVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEIT 65
Query: 57 AIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
+I+I +E +G + + + F FD +
Sbjct: 66 SIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPFEDSSFDHIFVC 112
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 61.7 bits (150), Expect = 1e-11
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGF 77
++ R + P +L++G G+G + I++ RRA + G
Sbjct: 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV 84
Query: 78 HDRLNVISKDALKTEFP-QFDLVVA 101
+R++ I DA + D+
Sbjct: 85 SERVHFIHNDAAGYVANEKCDVAAC 109
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 61.4 bits (149), Expect = 2e-11
Identities = 12/95 (12%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILN 69
+ T++ + + + L++G G G L+ + + I +
Sbjct: 63 SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE 122
Query: 70 RRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
+G D + V L+ +D + +
Sbjct: 123 EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 59.7 bits (145), Expect = 2e-11
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
+D +++G GTG +TL+L ++V+AI+ + + G D + ++ D
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90
Query: 88 ALKT--EFPQFDLVVANI 103
A + + P D+ V
Sbjct: 91 APEALCKIPDIDIAVVGG 108
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 60.1 bits (146), Expect = 3e-11
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 4 FHKSKGQHILTNQRVL----DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVH 56
F SK + + R+ + ++++ + TVL++G G G L ++ KV+
Sbjct: 7 FDPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVY 66
Query: 57 AIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
AI++ E MV + G + V+ + K P D +
Sbjct: 67 AIDVQEEMVNYAWEKVNKLGL-KNVEVLKSEENKIPLPDNTVDFIFMA 113
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 60.3 bits (146), Expect = 4e-11
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
+ LE+G GTG + L L+ + A++ D M+E+ ++ A ++ V+ DA
Sbjct: 39 EEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVD--RKVQVVQADAR 96
Query: 90 KTEFP--QFDLVVAN 102
P V+
Sbjct: 97 AIPLPDESVHGVIVV 111
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 58.5 bits (142), Expect = 5e-11
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD 79
+ + +++ G G G LLE + K++ I+I+ ++ +
Sbjct: 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKE--------- 57
Query: 80 RLNVISKDALKTEFP--QFDLVVAN 102
+ + + + E P D ++
Sbjct: 58 KFDSVITLSDPKEIPDNSVDFILFA 82
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 58.9 bits (142), Expect = 1e-10
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
+ P V + G + L L + ++ I+ D ++ R AA ++ +
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLH 175
Query: 85 SKDALKTEFP-QFDLVVAN 102
+DA K + +DL+ +N
Sbjct: 176 RQDAWKLDTREGYDLLTSN 194
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 58.1 bits (140), Expect = 2e-10
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
+ P VLE G G G + + + A + ++++ A + ++
Sbjct: 46 LTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEW-----NG 100
Query: 88 ALKTEFP---QFDLVVAN 102
+ F L+V+
Sbjct: 101 KGELPAGLGAPFGLIVSR 118
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 58.3 bits (141), Expect = 2e-10
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGF 77
I+ +N + VL+IG G G + + E H I+I +V + N R + +
Sbjct: 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-- 101
Query: 78 HDRLNVISKDALKTEFP--QFDLVVA 101
+++ + D L EFP FDL+ +
Sbjct: 102 -NKIIFEANDILTKEFPENNFDLIYS 126
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 57.6 bits (139), Expect = 4e-10
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF--HDRLNVISK 86
VLE+ G G LT L++ +V A+E+ ++ +R A++ DR ++
Sbjct: 81 PVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140
Query: 87 DALKTEFP-QFDLVV 100
D +F VV
Sbjct: 141 DMSAFALDKRFGTVV 155
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 56.8 bits (137), Expect = 5e-10
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 25 KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
+ VL++ G G + L + +V ++I E M+ A + I
Sbjct: 33 MKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFI 90
Query: 85 SKDALKTEFP--QFDLVVA 101
DA K F FD V+
Sbjct: 91 VGDARKLSFEDKTFDYVIF 109
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 56.8 bits (137), Expect = 5e-10
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 13/97 (13%)
Query: 15 NQRVLDSIVRK-------SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
+Q + DS R + + VL++G G G T KL K ++I E M++
Sbjct: 31 SQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQK 90
Query: 68 LNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
R L+ I D F QF+ ++A
Sbjct: 91 GKERGE----GPDLSFIKGDLSSLPFENEQFEAIMAI 123
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 56.9 bits (137), Expect = 6e-10
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 11 HILTNQRVLDSIVRKS-SINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVE 66
+ N + +V I +++ G G G L L L+ + K I+ E ++
Sbjct: 2 DLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 61
Query: 67 ILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN 102
+ + DA + E ++D+ + +
Sbjct: 62 EARELFRLLPY--DSEFLEGDATEIELNDKYDIAICH 96
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 56.3 bits (136), Expect = 7e-10
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
L +++ + + VL+IG G G+ L ++ ++ + MVE+ + A + G
Sbjct: 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG-V 68
Query: 79 DRLNVISKDALKTEFP--QFDLVVAN 102
+ + A FP FD++
Sbjct: 69 ENVRFQQGTAESLPFPDDSFDIITCR 94
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 56.1 bits (135), Expect = 1e-09
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSG 76
R++++I+ ++ + +IG GTG ++ L V+A+E M +
Sbjct: 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP---- 76
Query: 77 FHDRLNVISKDALKTEFP--QFDLVVAN 102
++ + A P D V++
Sbjct: 77 ---QVEWFTGYAENLALPDKSVDGVISI 101
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 55.2 bits (133), Expect = 2e-09
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHD 79
+ S + +L++G GTG L+ L+E +++ E+M+EI R +
Sbjct: 36 VSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG---NL 92
Query: 80 RLNVISKDALKTEFPQ-FDLVVAN 102
++ I D K +F + +D+VV+
Sbjct: 93 KVKYIEADYSKYDFEEKYDMVVSA 116
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 54.9 bits (132), Expect = 2e-09
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 28 INPDDTVLEIGPGTGNLTLKLL-EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
N D TVL+ G G L + E K + IEI + ++ + ++ F +LN+
Sbjct: 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKG 78
Query: 87 DALKTEFP--QFDLVVA 101
D K F V +
Sbjct: 79 DIRKLPFKDESMSFVYS 95
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 55.2 bits (133), Expect = 2e-09
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
++ I ++ + VL++ GTG TL+L E +V +++ E M+ + R+A +
Sbjct: 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK 89
Query: 79 DRLNVISKDALKTEFP-QFDLVV 100
+ + D L+ F +FD V
Sbjct: 90 --IEFLQGDVLEIAFKNEFDAVT 110
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 54.8 bits (132), Expect = 2e-09
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
LEIG G T KL K++ I++ R + +R ++ + D L
Sbjct: 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR---WSHISWAATDIL 107
Query: 90 KTEFP-QFDLVVAN 102
+ FDL+V
Sbjct: 108 QFSTAELFDLIVVA 121
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 54.4 bits (131), Expect = 3e-09
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
++++ G G + L L K+ +EI ER+ ++ R A + D++ +I D
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYD 107
Query: 88 --ALKTEFP--QFDLVVANIPY 105
+ P + D+V N PY
Sbjct: 108 LKKITDLIPKERADIVTCNPPY 129
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 54.8 bits (131), Expect = 4e-09
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 28 INPDDTVLEIGPGTGNLTLKLL--EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
+ + IG G LT LL +V+ +EI+ + E+ + G D +NVI+
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVIT 178
Query: 86 KDALKTEFPQFDLV 99
D + +FD++
Sbjct: 179 GDETVIDGLEFDVL 192
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 54.4 bits (131), Expect = 4e-09
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS 75
+ + +++ + P + +L++G GTG LT K+ + +V + M+E +
Sbjct: 43 WQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHL 102
Query: 76 GFHDRLNVISKDALKTEFPQ-FDLVVAN 102
F DA + D V +N
Sbjct: 103 HFDVA------DARNFRVDKPLDAVFSN 124
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 53.7 bits (129), Expect = 4e-09
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 25 KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
+ + + +IG G+G+++++ + IE +E + + G R+ +
Sbjct: 50 ALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAV 109
Query: 85 SKDALK--TEFPQFDLVVAN 102
A + P + V
Sbjct: 110 QGTAPAALADLPLPEAVFIG 129
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 54.4 bits (131), Expect = 4e-09
Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
L +++ +++ ++ VL++ G G++ KKV A ++ E ++++ +G H
Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-H 84
Query: 79 DRLNVISKDALKTEFP--QFDLVV 100
++ + DA + F +F +V
Sbjct: 85 QQVEYVQGDAEQMPFTDERFHIVT 108
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 53.8 bits (129), Expect = 4e-09
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
VLE+ GTG T L ++ +V A++ M+ R D + +D
Sbjct: 46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHG-----LDNVEFRQQDLF 100
Query: 90 KTEFP-QFDLVVAN 102
Q+D V
Sbjct: 101 DWTPDRQWDAVFFA 114
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 54.2 bits (130), Expect = 4e-09
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 14 TNQRVLDSIVRK-SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRA 72
T +++ + I + S D V++ G G T++ +V AI+ID + + A
Sbjct: 61 TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNA 120
Query: 73 ADSGFHDRLNVISKDALK-TEFPQFDLVVANIPYG 106
G D++ I D L F + D+V + P+G
Sbjct: 121 EVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 53.9 bits (129), Expect = 9e-09
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDE 62
+S G+ T V+D +V + VLE G E + + +EID
Sbjct: 16 RSLGRV-ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDP 74
Query: 63 RMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYG 106
+ +++ I D L E FDL++ N PYG
Sbjct: 75 KALDL----------PPWAEGILADFLLWEPGEAFDLILGNPPYG 109
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 52.7 bits (126), Expect = 1e-08
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
+ P+D +L +G G L+ +L V +++ +V + A +L +
Sbjct: 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP---QLRWETM 96
Query: 87 DALKTEFP--QFDLVV 100
D K +FP FD+V+
Sbjct: 97 DVRKLDFPSASFDVVL 112
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 52.7 bits (126), Expect = 1e-08
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
NP+ +++ G G T L + +V +++ + +EI + + RL
Sbjct: 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVP 113
Query: 88 ALKTEFP--QFDLVV 100
+ D +
Sbjct: 114 EQAAQIHSEIGDANI 128
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 51.8 bits (124), Expect = 2e-08
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 25 KSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRL 81
K + DTV++ G GN T L + + +V +I ++ + ++ D DR+
Sbjct: 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV 76
Query: 82 NVISKDALKTEFP---QFDLVVANIPY 105
+I + V+ N+ Y
Sbjct: 77 TLIKDGHQNMDKYIDCPVKAVMFNLGY 103
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 51.4 bits (123), Expect = 3e-08
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 6 KSKGQHILTNQRVLDSIVRK-SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERM 64
K + + +VR + +LE+G G+ T +L E + +E E
Sbjct: 17 GHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA 76
Query: 65 VEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN 102
+ R D + I + P ++D +V
Sbjct: 77 ISHAQGR-----LKDGITYIHSRFEDAQLPRRYDNIVLT 110
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 51.0 bits (122), Expect = 4e-08
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
+ VL++G G G L L + + ++ D +V+ A +
Sbjct: 52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQL--AEA 109
Query: 90 KTEFPQ-FDLVVAN 102
K + +DL+ AN
Sbjct: 110 KVPVGKDYDLICAN 123
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 51.2 bits (122), Expect = 6e-08
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDE------RMVEILNRRA 72
I + P + +LEIG G G+L+ L + S V I+I +
Sbjct: 35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL 94
Query: 73 ADSGFHDRLNVISKDALKTE---FP--QFDLVV 100
DRL V L + FD VV
Sbjct: 95 LAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVV 127
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 49.9 bits (119), Expect = 7e-08
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 25 KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
++ + V++ G GN T L +SKKV+A ++ E+ + ++R +D G
Sbjct: 17 AEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 50.2 bits (120), Expect = 9e-08
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 25 KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
+ + VL++G GTG +L L E +V ++ + M+E+ + NV+
Sbjct: 49 EEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-------NVV 101
Query: 85 SKDALKTEFP--QFDLVVA 101
A FP F+ V+A
Sbjct: 102 EAKAEDLPFPSGAFEAVLA 120
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 49.7 bits (119), Expect = 1e-07
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
+ ++++ D L++ GTGNLT L K A+++ + M+ + G
Sbjct: 27 IIEKCVENNLVFD-DYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL- 84
Query: 79 DRLNVISKDALKTEFP-QFDLVV 100
+ + +D +FDL+
Sbjct: 85 -KPRLACQDISNLNINRKFDLIT 106
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 49.4 bits (118), Expect = 2e-07
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 23 VRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSG----FH 78
+ + + DD +L+IG G+G ++L+L V I+I+ + + A G
Sbjct: 23 IIHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTG 82
Query: 79 DRLNVISKDALKTEFP--QFDLVV 100
+ ++A F FD V
Sbjct: 83 GKAEFKVENASSLSFHDSSFDFAV 106
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 49.0 bits (117), Expect = 3e-07
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
+ P + +IG GTG TL L + +V +++ E M+EI +A ++ H ++ +D
Sbjct: 31 VEPGKRIADIGCGTGTATLLLAD-HYEVTGVDLSEEMLEIAQEKAMETNRH--VDFWVQD 87
Query: 88 ALKTEFP-QFDLVV 100
+ E P D +
Sbjct: 88 MRELELPEPVDAIT 101
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 48.6 bits (116), Expect = 3e-07
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
++L++ GTG + +E+ E M+ +R D+ H D
Sbjct: 39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQ------GDM 92
Query: 89 LKTEFP-QFDLVV 100
+F VV
Sbjct: 93 RDFRLGRKFSAVV 105
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 48.2 bits (115), Expect = 3e-07
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
G I R++D++ +L+ G G G + L + V ++D +++
Sbjct: 29 AGNDIYGEARLIDAMAP-----RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDY 83
Query: 68 LNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
+ + + D + FDL+V+
Sbjct: 84 AKQDFPE------ARWVVGDLSVDQISETDFDLIVSA 114
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 48.1 bits (115), Expect = 3e-07
Identities = 14/80 (17%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD-RLNVISK 86
++ DD +L++G G G + + L + K +I+ R +++ + + + V+
Sbjct: 50 VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS 109
Query: 87 DALK-TEFPQFDLVVANIPY 105
D + + +++ ++ N P
Sbjct: 110 DLYENVKDRKYNKIITNPPI 129
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 48.7 bits (116), Expect = 3e-07
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 16/131 (12%)
Query: 28 INPDDTVLEIGPGTGNLTLKLL-EVSK-KVHAIEIDERMVEILNRRAAD---SGFHDRLN 82
+ + ++G G G + + + K +V E + M E R + F R+
Sbjct: 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93
Query: 83 VISKDALKTEFP---------QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQK-- 131
V+ D F V+ N PY + ++ L +
Sbjct: 94 VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWI 153
Query: 132 EFARRLLASPG 142
A ++ S G
Sbjct: 154 RTASAIMVSGG 164
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 48.3 bits (115), Expect = 3e-07
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
D +L++G GTG T L + ++ +E R+VE+ + H +
Sbjct: 41 VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT------HPSVTFHHGTIT 94
Query: 90 KTEFP--QFDLVVAN 102
++ ++A
Sbjct: 95 DLSDSPKRWAGLLAW 109
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 48.5 bits (115), Expect = 4e-07
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
+ L+ G G G +T LL + +E + M+E R A I
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---MPVGKFILAS 148
Query: 88 ALKTEFP--QFDLVVAN 102
P +DL+V
Sbjct: 149 METATLPPNTYDLIVIQ 165
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 47.5 bits (113), Expect = 6e-07
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81
++ + L++G G G +L L V A + + + + R + D L
Sbjct: 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIEN-LDNL 82
Query: 82 NVISKDALKTEFP-QFDLVVANI 103
+ D F Q+D +++ +
Sbjct: 83 HTRVVDLNNLTFDRQYDFILSTV 105
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 47.9 bits (114), Expect = 6e-07
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
++L++ GTG L + V +E+ M+ I RR D+ D
Sbjct: 49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVL------HHGDM 102
Query: 89 LKTEFP-QFDLVV 100
+F V
Sbjct: 103 RDFSLGRRFSAVT 115
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 47.9 bits (114), Expect = 7e-07
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 16 QRVLDSIVRK-SSINPDDTVLEIGPGTGNLTLKL-LEVSKKVHAIEIDERMVEILNRRAA 73
+ ++ PDDT+++ G G G + +V + + + NRRA
Sbjct: 102 SAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAR 161
Query: 74 DSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
+ D + + L T F N
Sbjct: 162 ELRIDDHVRSRVCNMLDTPFDKGAVTASWNN 192
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 48.1 bits (114), Expect = 7e-07
Identities = 11/96 (11%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADS 75
++ + ++++G G G TL++ L+ +++ ++ M++ S
Sbjct: 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS 84
Query: 76 GF-HDRLNVISKDALKTEFP--------QFDLVVAN 102
+ ++ + +F + D++ A
Sbjct: 85 PDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAV 120
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 46.8 bits (112), Expect = 8e-07
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 3 FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDE 62
F + +T + + + K ++N DD V+++G G+G +T+++ + K V+AI+ +
Sbjct: 10 FIRREGVP--ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLD 67
Query: 63 RMVEILNRRAADSGFHDRLNVISKDA 88
+E+ + A +I A
Sbjct: 68 GAIEVTKQNLAKFNI-KNCQIIKGRA 92
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 47.1 bits (112), Expect = 1e-06
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 10 QHILTNQRVLDSIVRK-SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
+ L ++ S ++ + P+ +EIG GTG + L K +E ERM EI
Sbjct: 26 RWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIA 81
Query: 69 NRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
+R V+ A FD +
Sbjct: 82 RKRGVF--------VLKGTAENLPLKDESFDFALMV 109
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 47.0 bits (111), Expect = 2e-06
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFH 78
I+ + + P +LE+G G+GN++ +L + +E DE ++ ++
Sbjct: 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI 161
Query: 79 DRLNVISKDALKTEFPQ-FDLVVANIP 104
+ D Q +D V+A+IP
Sbjct: 162 GNVRTSRSDIADFISDQMYDAVIADIP 188
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 46.7 bits (111), Expect = 2e-06
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
++++G G G E + V +++ E+M+ D+G D
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGIT----YERADL 98
Query: 89 LKTEFP--QFDLVVAN 102
K P FDL ++
Sbjct: 99 DKLHLPQDSFDLAYSS 114
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 46.5 bits (110), Expect = 2e-06
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNR 70
L QR ++ +V + V+++G G GNL LL+ S +++ +++ R +EI
Sbjct: 13 LNQQR-MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE 71
Query: 71 RAADSGFHDR------LNVISKDALKTEFPQFDLVVANIPY 105
R L + F +D
Sbjct: 72 RLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVI 112
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 46.5 bits (110), Expect = 2e-06
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFH 78
IV + I+P D ++E G G+G LTL L + +V + EI E ++ +GF
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD 144
Query: 79 DRLNVISKDALK-TEFPQFDLVVANIP 104
DR+ + KD + E D V+ ++P
Sbjct: 145 DRVTIKLKDIYEGIEEENVDHVILDLP 171
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 46.0 bits (109), Expect = 2e-06
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
+LE+G G G +L V A + + +RR + +
Sbjct: 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQL----- 97
Query: 90 KTEFPQFDLVVAN 102
+D V A+
Sbjct: 98 -DAIDAYDAVWAH 109
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 46.0 bits (109), Expect = 2e-06
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 5/107 (4%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
+ +L++G L + LL+ A E+ + + ++ G +++V
Sbjct: 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78
Query: 86 KDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSF--RSATLLLQ 130
+ L F + D + G+ L+A ++ TL+LQ
Sbjct: 79 ANGLS-AFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQ 124
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 46.2 bits (109), Expect = 3e-06
Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH- 78
++ + VL++ GTG ++ L+E V +++ ++M++ + +
Sbjct: 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEP 106
Query: 79 -------DRLNVISKDALKTEFPQFDLVV 100
+ N ++ D FD V+
Sbjct: 107 AFDKWVIEEANWLTLDKDVPAGDGFDAVI 135
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 45.7 bits (108), Expect = 3e-06
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
TVL++G G G + E +KKV I++ ERM+ R+ + K
Sbjct: 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS----PVVCYEQKAI 99
Query: 89 LKTEFP--QFDLVVAN 102
+++V+++
Sbjct: 100 EDIAIEPDAYNVVLSS 115
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 45.6 bits (108), Expect = 3e-06
Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 32/170 (18%)
Query: 9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
I +R L ++ P +++LE+G GTG +L + +E E M+ +
Sbjct: 20 AYVIAEEERALKGLLP-----PGESLLEVGAGTGYWLRRLPY--PQKVGVEPSEAMLAVG 72
Query: 69 NRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGI---SSPLVA---------- 113
RRA ++ + + FP FD+V+ +
Sbjct: 73 RRRAPEATW------VRAWGEALPFPGESFDVVLLF--TTLEFVEDVERVLLEARRVLRP 124
Query: 114 --KLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEF 161
LV G S L + + + + F L+ E
Sbjct: 125 GGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLGPPEA 174
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 46.1 bits (109), Expect = 4e-06
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
VL++G G G LTL L + +V +E D V L + + + D
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEA 292
Query: 90 KTEFPQFDLVVANIPY 105
TE +FD++V N P+
Sbjct: 293 LTEEARFDIIVTNPPF 308
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 45.9 bits (108), Expect = 4e-06
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 18/160 (11%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH 78
+I++ + D VL++G G+G L+ + ++K++A+E M + +
Sbjct: 148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT 206
Query: 79 DRLNVISKDALKTEFP-QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRL 137
DR+ VI + P Q D+++ S P+ L +L A++
Sbjct: 207 DRIVVIPGKVEEVSLPEQVDIII-------SEPMGYMLFNE-------RMLESYLHAKKY 252
Query: 138 LASPGDSEFNRLAVNVKLVADVEFVMDV-SKRDFLPCPKV 176
L G+ V++ D + M+ +K +F P
Sbjct: 253 LKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSF 292
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 44.9 bits (107), Expect = 5e-06
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 34 VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
V+ G G G + +V I+ D VE R D+G DR+ + D L
Sbjct: 60 VVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG 119
Query: 91 T--EFPQFDLV 99
D++
Sbjct: 120 IAAGQRDIDIL 130
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 44.7 bits (106), Expect = 6e-06
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 4 FHKSKGQHIL--TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
++ K H N +L I ++ VL+IG +G L + E +V IE
Sbjct: 9 LYEEKSGHYYNAVNPNLLKHIKKEWK-----EVLDIGCSSGALGAAIKENGTRVSGIEAF 63
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVAN 102
E A + H L I + E QFD V+
Sbjct: 64 PEAAEQ----AKEKLDHVVLGDIETMDMPYEEEQFDCVIFG 100
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 44.9 bits (106), Expect = 6e-06
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
++ +L++G L ++L+E K A E+ E + + G +++ V
Sbjct: 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72
Query: 86 KDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSF--RSATLLLQ 130
+ L + V I G+ L+A+++ L+LQ
Sbjct: 73 ANGLAAFEETDQVSVITIA-GMGGRLIARILEEGLGKLANVERLILQ 118
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 44.5 bits (105), Expect = 6e-06
Identities = 11/86 (12%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81
+V ++ P +L + G G L + +V A++ + + A + G ++
Sbjct: 21 LVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV--KI 78
Query: 82 NVISKDALKTEFP--QFDLVVANIPY 105
+ + + ++ +V+ +
Sbjct: 79 TTVQSNLADFDIVADAWEGIVSIFCH 104
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 45.4 bits (107), Expect = 7e-06
Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH 78
+I++ + D VL++G G+G L+ + +K++A+E M + +
Sbjct: 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT 98
Query: 79 DRLNVISKDALKTEFP-QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRL 137
DR+ VI + P Q D+++ S P+ L +L A++
Sbjct: 99 DRIVVIPGKVEEVSLPEQVDIII-------SEPMGYMLFNE-------RMLESYLHAKKY 144
Query: 138 LASPGDSEFNRLAVNVKLVADVEFVMDV-SKRDFLPCPKV 176
L G+ V++ D + M+ +K +F P
Sbjct: 145 LKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSF 184
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 44.6 bits (105), Expect = 7e-06
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAA 73
QR L ++V V+++G G GNL LL+ +++ +++ ++E R
Sbjct: 16 QR-LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK 74
Query: 74 DSGFHDR------LNVISKDALKTEFPQFDLVVAN 102
+ L S F +D
Sbjct: 75 IDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 44.7 bits (106), Expect = 8e-06
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
+ VL++G G G L++ S ++ ++ VE A +G V +
Sbjct: 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGE--VFAS 252
Query: 87 DALKTEFPQFDLVVANIPY 105
+ +FD++++N P+
Sbjct: 253 NVFSEVKGRFDMIISNPPF 271
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 44.5 bits (105), Expect = 1e-05
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
++G G GN T L + + I+ D+ M+E R + N D
Sbjct: 33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPN------TNFGKAD 86
Query: 88 ALKTEFPQ-FDLVVAN 102
+ Q DL+ AN
Sbjct: 87 LATWKPAQKADLLYAN 102
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 43.6 bits (103), Expect = 1e-05
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLT--LKLLEVSKKVHAIEIDERMVEILNR 70
LT Q V + + P +T+ +IG G+G++ EI E E +
Sbjct: 8 LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS 67
Query: 71 RAADSGFHDRLNVISK--DALKTEFPQFDLVV 100
A + G DR+ V A D++
Sbjct: 68 NAINLGVSDRIAVQQGAPRAFDDVPDNPDVIF 99
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 44.7 bits (105), Expect = 1e-05
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 40 GTGNLT---LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-- 94
G +LT L L + K++ ++IDER+ + + + A + G+ + + + + D K
Sbjct: 180 GDDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY-EDIEIFTFDLRKPLPDYA 238
Query: 95 --QFDLVVANIPYGISS 109
+FD + + P + +
Sbjct: 239 LHKFDTFITDPPETLEA 255
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 43.9 bits (103), Expect = 1e-05
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLL-EVSKKVHAIEIDERMVEILNRRAADSGFHDR 80
+ + L+ G G G +T +LL + ++V ++I E + + G
Sbjct: 71 LREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRV 129
Query: 81 LNVISKDALKTEFP--QFDLVVAN 102
N +D++
Sbjct: 130 RNYFCCGLQDFTPEPDSYDVIWIQ 153
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 44.2 bits (104), Expect = 1e-05
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFH 78
I + D +++ G G+G + L KV A E E ++ G
Sbjct: 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI 163
Query: 79 DRLNV-ISKDALKTEFPQFDLVVANI--PYGISSPLVAKLVYGTK 120
+R+ + + + + D + ++ P+ L G +
Sbjct: 164 ERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGR 208
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 43.7 bits (104), Expect = 1e-05
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 15 NQRVLD------SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVE 66
+ + L I K+ + + LEIG G + + E KV A E+DE E
Sbjct: 34 HPKGLVTTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFE 93
Query: 67 ILNRRAADSGFHDRLNVISKDALKTEFPQ-FDLVVANIPYGISSPLVAKL 115
R + + RL + +K FD++ + PY PL L
Sbjct: 94 YARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY-YDKPLGRVL 142
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 43.3 bits (103), Expect = 2e-05
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVEILNRRAADS 75
++ + TV ++G G+G L KL +K V A +I + + AA +
Sbjct: 54 IERAMV-----KPLTVADVGTGSGILAIAAHKLG--AKSVLATDISDESMTAAEENAALN 106
Query: 76 GFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVA 113
G +D + L +FDL+VANI ++ L+
Sbjct: 107 GIYDIA-LQKTSLLADVDGKFDLIVANI---LAEILLD 140
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 43.7 bits (102), Expect = 2e-05
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH 78
+++ + TVL++G G+G L + + ++KV+A+E + M + +
Sbjct: 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK-MADHARALVKANNLD 111
Query: 79 DRLNVISKDALKTEFP-QFDLVVANI 103
+ VI P + D++++
Sbjct: 112 HIVEVIEGSVEDISLPEKVDVIISEW 137
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 43.0 bits (101), Expect = 3e-05
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
VL+IG G G E + ++I+E M++ + NV+ D
Sbjct: 39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG---------KFNVVKSD 89
Query: 88 ALKTEFP----QFDLVVAN 102
A++ D V+ +
Sbjct: 90 AIEYLKSLPDKYLDGVMIS 108
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 42.9 bits (101), Expect = 3e-05
Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
I ++ + +IG L ++ + A E+ + + ++ SG ++++V
Sbjct: 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK 78
Query: 86 KDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSF--RSATLLLQ 130
+ L + D + + G+ L+ ++ + L+LQ
Sbjct: 79 GNGLA-VIEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQ 124
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 42.7 bits (100), Expect = 4e-05
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH 78
+S+ + D VL++G GTG L + + ++KV IE + + + +
Sbjct: 56 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLD 114
Query: 79 DRLNVISKDALKTEFP--QFDLVVANI 103
+ +I + E P + D++++
Sbjct: 115 HVVTIIKGKVEEVELPVEKVDIIISEW 141
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 42.3 bits (99), Expect = 4e-05
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
P L G G G+ + + + V ++I E + N S + + + +D
Sbjct: 66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVF 125
Query: 90 KTEFP-QFDLVVA 101
FDL+
Sbjct: 126 TWRPTELFDLIFD 138
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 42.9 bits (101), Expect = 4e-05
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGF 77
+++R + P VL+ G+G + L+ V+A ++DE+ + + A SG
Sbjct: 194 ALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL 253
Query: 78 HDRLNVISKDALKTEFP--QFDLVVANIPYGIS 108
+ + DA + D ++AN P+G+
Sbjct: 254 -SWIRFLRADARHLPRFFPEVDRILANPPHGLR 285
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 42.3 bits (99), Expect = 4e-05
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81
I K ++N + VLE G G+G L L EV+ +V E E + + +
Sbjct: 83 IALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNV 142
Query: 82 NVISKDALKTEFPQ--FDLVVANIP 104
+ D E P+ F ++
Sbjct: 143 KFFNVDFKDAEVPEGIFHAAFVDVR 167
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 42.1 bits (100), Expect = 5e-05
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
TV +IG G+G + + + + S V A ++ + VEI + A G DR V +
Sbjct: 122 YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE 181
Query: 88 ---ALKTEFPQFDLVVANIPY 105
K +F +++++N PY
Sbjct: 182 FLEPFKEKFASIEMILSNPPY 202
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 42.9 bits (100), Expect = 5e-05
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRA 72
QR ++ ++ + T+++ G G+G+L LL+ + + ++I + + +
Sbjct: 708 QR-VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKML 766
Query: 73 ADSGFHDRLNVISKDALKT-------EFPQFDLVVAN 102
+ NV S D+
Sbjct: 767 HVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCL 803
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 41.8 bits (98), Expect = 6e-05
Identities = 12/98 (12%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHD 79
+ K + D + +IG G+ +++++ + + ++ A+E + + + +
Sbjct: 32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-R 90
Query: 80 RLNVISKDALKT--EFPQFDLVVANIPYGISSPLVAKL 115
+ ++ A + + P D V G+ ++ +
Sbjct: 91 NVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAV 128
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 41.8 bits (99), Expect = 6e-05
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 34 VLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91
+LEIG G +++ +S V IE +E M++ + A F +++ +I +AL+
Sbjct: 75 ILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ 134
Query: 92 ----EFPQFDLV 99
+D++
Sbjct: 135 FENVNDKVYDMI 146
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 41.9 bits (99), Expect = 6e-05
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 34 VLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91
+LEIG G +++ + + +IE DER E ++ G R+ ++ DAL+
Sbjct: 58 ILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117
Query: 92 -----EFPQFDLV 99
+P FD++
Sbjct: 118 GEKLELYPLFDVL 130
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 42.0 bits (99), Expect = 7e-05
Identities = 12/89 (13%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVSKK-------VHAIEIDERMVEILNRRAADSGFHD-R 80
+ ++L+ GT NL ++ + +++D+ + ++ + +
Sbjct: 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLL---ISLALVGADLQRQK 185
Query: 81 LNVISKDAL-KTEFPQFDLVVANIPYGIS 108
+ ++ +D L D+V++++P G
Sbjct: 186 MTLLHQDGLANLLVDPVDVVISDLPVGYY 214
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 42.0 bits (98), Expect = 7e-05
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFH 78
+V + P VLE G G+G LTL L V + E + R
Sbjct: 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV 147
Query: 79 DRLNVISKDALKTEFPQ--FDLVVANIP 104
+ + + E + +D V ++
Sbjct: 148 ENVRFHLGKLEEAELEEAAYDGVALDLM 175
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 41.5 bits (98), Expect = 8e-05
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 34 VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
+LEIG G T+ + ++ +E D ++ +G R+ + AL+
Sbjct: 67 ILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ 126
Query: 91 T-----EFPQFDLV 99
+ E P FDL+
Sbjct: 127 SLESLGECPAFDLI 140
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 41.7 bits (97), Expect = 9e-05
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEIL--NRRAADSG 76
IV + I P VLE G G+G LTL LL + +V + E E N
Sbjct: 91 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ 150
Query: 77 FHDRLNVISKDALKTEFPQ--FDLVVANIP 104
D ++ D +E P D V ++
Sbjct: 151 PPDNWRLVVSDLADSELPDGSVDRAVLDML 180
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 41.1 bits (97), Expect = 9e-05
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 34 VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
VLEIG G L + ++ A + D I + +G +++++ AL
Sbjct: 76 VLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135
Query: 91 T--------EFPQFDLV 99
T P+FDL+
Sbjct: 136 TLEQLTQGKPLPEFDLI 152
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 41.5 bits (97), Expect = 1e-04
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
VL++G G G +L L + V + + +E + LN + ++ D
Sbjct: 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLN--ISTALYDIN 177
Query: 90 KTEFP-QFDLVVAN 102
+D +V+
Sbjct: 178 AANIQENYDFIVST 191
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 41.4 bits (97), Expect = 1e-04
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFH--DRLNVI 84
N + ++++G G G + L LL+ + KV ++ V + DR +
Sbjct: 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM 280
Query: 85 SKDALKTEFP-QFDLVVANIPY 105
+AL P +F+ V+ N P+
Sbjct: 281 INNALSGVEPFRFNAVLCNPPF 302
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 40.6 bits (96), Expect = 1e-04
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVE 66
+ P VLEIG G+G T L + + V ++E + +
Sbjct: 75 LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQW 113
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 40.3 bits (95), Expect = 2e-04
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 34 VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
V++IG TG + + + ++DE+ + +G D++ + A
Sbjct: 68 VIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD 127
Query: 91 T--------EFPQFDLV 99
T + Q+DL+
Sbjct: 128 TLAELIHAGQAWQYDLI 144
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 40.3 bits (95), Expect = 2e-04
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
L +R P D VL++G G+G L + ++ K ++ID ++ A +G
Sbjct: 114 LARHLR-----PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR 168
Query: 79 DRLNVISKDALKTEFPQFDLVVANIPYGISSPLVA 113
R S +A P FDL+VAN+ + A
Sbjct: 169 PRFLEGSLEAALPFGP-FDLLVANL---YAELHAA 199
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 40.3 bits (95), Expect = 2e-04
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVE 66
++ VLEIG G G T + E+ KV ++EI+E+M
Sbjct: 68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYN 106
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 40.0 bits (94), Expect = 2e-04
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 34 VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHD-RLNVISKDAL 89
+ I P G + L +L + I+ + ++G+ R+ + L
Sbjct: 60 AIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPL 119
Query: 90 KT----EFPQFDLV 99
+ LV
Sbjct: 120 DVMSRLANDSYQLV 133
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 40.1 bits (93), Expect = 3e-04
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHD 79
+ + + D+VL++G G G LK + + ++I E + RA +
Sbjct: 55 ACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF 114
Query: 80 RLNVISKDALKTEFP---QFDLVVAN 102
++ ++D+ +FD++ +
Sbjct: 115 KVFFRAQDSYGRHMDLGKEFDVISSQ 140
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 40.7 bits (94), Expect = 3e-04
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 25 KSSINPDDTVLEIGPGTGNLTLKLLE-----VSKKVHAIEIDERMVEILNRRAADSGFH- 78
+ D+ + + G+GNL + + +++ A +I+ +E+L+ R
Sbjct: 316 GRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL 375
Query: 79 ----DRLNVISKDAL---KTEFPQFDLVVANIPYGISS 109
+ + +D +F +VV N PY
Sbjct: 376 VSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGV 413
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 40.1 bits (93), Expect = 3e-04
Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 10/147 (6%)
Query: 24 RKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL--NRRAADSGFHDRL 81
+ I V+++ G G + L+ + + IE ++ N + +
Sbjct: 87 KSRFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KDV 145
Query: 82 NVISKDAL----KTEFPQFDLVVANIPYGISSP--LVAKLVYGTKSFRSATLLLQKEFAR 135
N+++ D + D + + + + A AT LL +
Sbjct: 146 NILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSI 205
Query: 136 RLLASPGDSEFNRLAVNVKLVADVEFV 162
SP ++ L ++ V ++ V
Sbjct: 206 LAKLSPMIDLWDTLQ-SLLHVQELHVV 231
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 39.5 bits (93), Expect = 3e-04
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 34 VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
+LEIG G T+ L +V +E E+ +I + +DR+ V + AL
Sbjct: 62 ILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD 121
Query: 91 T-------EFPQFDLV 99
+ ++ FD +
Sbjct: 122 SLQQIENEKYEPFDFI 137
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 39.3 bits (92), Expect = 4e-04
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 34 VLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
L++G TG L L L +V E+D + E+ + ++++ K AL+
Sbjct: 73 ALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132
Query: 91 T--------EFPQFDLV 99
T E FD+
Sbjct: 133 TLDELLAAGEAGTFDVA 149
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 39.7 bits (92), Expect = 4e-04
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH 78
D I + I D VL++G GTG L++ + +KKV ++ E + + + +
Sbjct: 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAM-DIIRLNKLE 112
Query: 79 DRLNVISKDA--LKTEFPQFDLVVANI 103
D + +I + + D++++
Sbjct: 113 DTITLIKGKIEEVHLPVEKVDVIISEW 139
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 39.8 bits (93), Expect = 5e-04
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLK--LLEVSKKVHAIEIDERMVEILNRRAADSGFHD 79
++ + ++ VL+ G+G + ++ L S ++ IE + + A +G D
Sbjct: 210 MIELAELDGGS-VLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLD 268
Query: 80 RLNVISKDALKTEFP--QFDLVVANIPYG 106
++ I DA + D ++N+PYG
Sbjct: 269 KIKFIQGDATQLSQYVDSVDFAISNLPYG 297
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 38.8 bits (90), Expect = 5e-04
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 17/122 (13%)
Query: 30 PDDTVLEIGPGTGNLTL--KLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
+V++ G G G L LL + V A +ID +E R +N + D
Sbjct: 51 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC------GGVNFMVAD 103
Query: 88 ALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLL------QKEFARRLLASP 141
+ ++D + N P+G + + K+F ++ + ++F RR ++
Sbjct: 104 VSEIS-GKYDTWIMNPPFGSVVKH-SDRAFIDKAFETSMWIYSIGNAKARDFLRREFSAR 161
Query: 142 GD 143
GD
Sbjct: 162 GD 163
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 38.8 bits (91), Expect = 6e-04
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 34 VLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
VLE+G TG L + L +V +I+E + + ++ ++ + AL
Sbjct: 64 VLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD 123
Query: 91 T--------EFPQFDLV 99
T QFD +
Sbjct: 124 TLHSLLNEGGEHQFDFI 140
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 38.9 bits (91), Expect = 7e-04
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 28 INPDDTVLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD 79
++ VLEIG GTG +++ V ++E ++ EI R G +
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN 127
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 38.9 bits (91), Expect = 7e-04
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 34 VLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
+EIG TG L + K+ A++I++ E+ +G +++ AL
Sbjct: 83 TMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 142
Query: 91 T---------EFPQFDLV 99
+D +
Sbjct: 143 VLDEMIKDEKNHGSYDFI 160
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 38.9 bits (90), Expect = 7e-04
Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 18/105 (17%)
Query: 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--------VSKKVHAIEIDERMVE 66
++++ I R + +L IG G G + L++L V +E +
Sbjct: 37 DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIA 96
Query: 67 ILNRRAADSGFHDRLNVISKDALKTEFP----------QFDLVVA 101
A + + + +E+ ++D +
Sbjct: 97 KYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM 141
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 38.4 bits (90), Expect = 8e-04
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 34 VLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
+E+G TG L + K+ AI+ D EI +G ++N I DA+
Sbjct: 74 TIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML 133
Query: 91 T---------EFPQFDLV 99
+D
Sbjct: 134 ALDNLLQGQESEGSYDFG 151
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY,
structural genomics, structural genomics consortium,
SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A*
3c6m_A*
Length = 364
Score = 38.7 bits (90), Expect = 0.001
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 32/133 (24%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEV----SKKVHAIEIDERMVEI-------LNRRAADSGFH 78
VL +G G G L E+ K V +EID+ +++ D+
Sbjct: 188 TGKDVLILGGGDG-GILC--EIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKG 244
Query: 79 DRLNVISKDALK------TEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKE 132
D V+ +D + E +FD V+ ++ S + +T +
Sbjct: 245 DCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEED---------STWEFLRL 295
Query: 133 F---ARRLLASPG 142
+ ++L G
Sbjct: 296 ILDLSMKVLKQDG 308
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 37.7 bits (88), Expect = 0.001
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 34 VLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
++EIG TG +L L K+ ++ E + + ++G +++ + AL+
Sbjct: 64 IIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE 123
Query: 91 T 91
T
Sbjct: 124 T 124
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 38.1 bits (88), Expect = 0.001
Identities = 23/146 (15%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH 78
++I++ + D VL++G GTG L++ + +K V +++ ++E+ +GF
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS 86
Query: 79 DRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLL 138
D++ ++ P + IS + L+Y + + L
Sbjct: 87 DKITLLRGKLEDVHLP-----FPKVDIIISEWMGYFLLYESM------MDTVLYARDHYL 135
Query: 139 ASPGDSEFNRLAVNVKLVADVEFVMD 164
G ++ ++++ + D ++ +
Sbjct: 136 VEGGLIFPDKCSIHLAGLEDSQYKDE 161
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics,
niaid, national institute of allergy AN infectious
diseases; 1.75A {Burkholderia thailandensis}
Length = 432
Score = 37.9 bits (88), Expect = 0.002
Identities = 17/77 (22%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKK-------VHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
V+E G GTG L LL +++ + V
Sbjct: 140 RVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRW 199
Query: 86 KDALKTEFPQFDLVVAN 102
DAL F VV N
Sbjct: 200 LDALPERFEGV--VVGN 214
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 37.6 bits (86), Expect = 0.002
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 3/113 (2%)
Query: 25 KSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLN 82
K VL++G G+LTL + ++ ++ID R++ + + L
Sbjct: 41 KPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLS-EELR 99
Query: 83 VISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFAR 135
+ + + + + P G + L
Sbjct: 100 LPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVF 152
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 37.3 bits (87), Expect = 0.002
Identities = 16/94 (17%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAA 73
+++D+++R+ S + VLE+G G +++ L+ ++ +EI+ I +
Sbjct: 48 QIMDAVIREYSPS---LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN 104
Query: 74 DSGFHDRLNVISKDALKT--------EFPQFDLV 99
+G D++ +++ + + D+V
Sbjct: 105 FAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 37.3 bits (86), Expect = 0.002
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
N ++ V+++ G G T+ L + SK V+AIE + L + ++ + +++
Sbjct: 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILA 176
Query: 86 KDALKTEFPQFDLVVANIPYGI 107
+ D V+ +
Sbjct: 177 DNRDVELKDVADRVIMGYVHKT 198
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET:
AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A*
3b7p_A* 3rie_A* 2pwp_A*
Length = 283
Score = 37.2 bits (87), Expect = 0.002
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEILNR--RAADSGFHD-RLNVIS 85
VL +G G G ++ E+ K + EIDE ++E+ + G+ D R+NV
Sbjct: 82 VLVVGGGDG-GIIR--ELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI 138
Query: 86 KDA---LKTEFPQFDLVVANI--PYGISSPL 111
+DA L+ +D+++ + P G + L
Sbjct: 139 EDASKFLENVTNTYDVIIVDSSDPIGPAETL 169
>1xj5_A Spermidine synthase 1; structural genomics, protein structure
initiative, CESG, AT1G23820, putrescine aminopropyl
transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP:
c.66.1.17 PDB: 2q41_A
Length = 334
Score = 37.4 bits (87), Expect = 0.002
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEILNR--RAADSGFHD-RLNVIS 85
VL IG G G L+ EV++ ++ EID+ +V++ + G+ D R+N++
Sbjct: 124 VLVIGGGDG-GVLR--EVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI 180
Query: 86 KDALK----TEFPQFDLVVANI--PYGISSPLVAKLVYG 118
D + +D V+ + P G + L K +
Sbjct: 181 GDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQ 219
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 37.4 bits (86), Expect = 0.002
Identities = 13/115 (11%), Positives = 31/115 (26%), Gaps = 10/115 (8%)
Query: 25 KSSINPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLN 82
S + ++IG G + L A E+D+ + + D +
Sbjct: 60 DSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIK 119
Query: 83 V--------ISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLL 129
V + + +D + N P+ + + + +
Sbjct: 120 VVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVN 174
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics,
PSI, protein structure initiative; 1.80A {Pyrococcus
furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Length = 281
Score = 37.2 bits (87), Expect = 0.003
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Query: 34 VLEIGPGTGNLTLKLLEVSK----KVHAIEIDERMVEI---------LNRRAADSGFHDR 80
VL IG G G T++ EV + +V +EIDE ++ + A +G H++
Sbjct: 79 VLVIGGGDG-GTVR--EVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEK 135
Query: 81 LNVISKDALK--TEFPQFDLVVANI--PYGISSPLVAKLVYG 118
+ D + FD+++A+ P G + L ++ Y
Sbjct: 136 AKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYR 177
>2pt6_A Spermidine synthase; transferase, structural genomics consor
SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium
falciparum} PDB: 2pss_A* 2pt9_A*
Length = 321
Score = 37.3 bits (87), Expect = 0.003
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEILNR--RAADSGFHD-RLNVIS 85
VL +G G G ++ E+ K + EIDE ++E+ + G+ D R+NV
Sbjct: 120 VLVVGGGDG-GIIR--ELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI 176
Query: 86 KDA---LKTEFPQFDLVVANI--PYGISSPL 111
+DA L+ +D+++ + P G + L
Sbjct: 177 EDASKFLENVTNTYDVIIVDSSDPIGPAETL 207
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine
synthase, riken STR genomics/proteomics initiative,
RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB:
3anx_A*
Length = 314
Score = 37.3 bits (87), Expect = 0.003
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEI----LNRRAADSGFHDRLNVI 84
VL +G G G TL+ EV K K ++ID +VE+ + + R ++
Sbjct: 81 VLIVGGGEG-ATLR--EVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLV 137
Query: 85 SKDA---LKTEFPQFDLVVANI--PYGISSPLVAKLVYGTKSF 122
DA L+ ++D+V+ ++ P G +P A+L+Y T F
Sbjct: 138 IDDARAYLERTEERYDVVIIDLTDPVGEDNP--ARLLY-TVEF 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.003
Identities = 50/287 (17%), Positives = 81/287 (28%), Gaps = 130/287 (45%)
Query: 1 YIFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
I F KG+ I N +++ ++ D + T K+ + EI
Sbjct: 1673 TIHFGGEKGKRIREN---YSAMIFET--IVDGKL---------KTEKIFK--------EI 1710
Query: 61 DERMVEILNRRAADSGFHDRLNVISKDAL-KTEFPQ---------------------FDL 98
+E F K L T+F Q D
Sbjct: 1711 NEHSTSYT--------FRS-----EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 99 VVANIPYGIS----SPLVAKLVYGTKSFRSATLLLQKEFAR-RLL--ASPGD----SEFN 147
A G S + L + + S S ++ F R + A P D S +
Sbjct: 1758 TFA----GHSLGEYAALAS--LADVMSIESLVEVV---FYRGMTMQVAVPRDELGRSNYG 1808
Query: 148 RLAVNVKLVA------DVEFVMD-VSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAF 200
+A+N VA +++V++ V KR +V EI VN
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKR--------TGWLV------EI--VNY------ 1846
Query: 201 TRTCFSKKN---------------KTLGATFKQ-KKKVIELLRLSKQ 231
N T+ K + I+++ L K
Sbjct: 1847 --------NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Score = 32.3 bits (73), Expect = 0.12
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 17/63 (26%)
Query: 4 FHKSKGQHI------LTNQRVLDSIVRK-----SSINPDDT-VLEIGPGT----GNLTLK 47
+ G + ++ +R++D I+R ++ T +L+ GPG G LT +
Sbjct: 460 YDTFDGSDLRVLSGSIS-ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 48 LLE 50
+
Sbjct: 519 NKD 521
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 36.5 bits (85), Expect = 0.004
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVE 66
+ P +LE+G G+G + E V V+ IE +VE
Sbjct: 89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVE 128
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 37.0 bits (85), Expect = 0.004
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 18/100 (18%)
Query: 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGF 77
S + TVL++G GTG ++ KV +++ + +E+ +
Sbjct: 74 STLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAE 133
Query: 78 HDRL-----NV--------ISKDALKTEFP--QFDLVVAN 102
NV A P D+V++N
Sbjct: 134 KFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISN 173
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 36.6 bits (85), Expect = 0.004
Identities = 16/84 (19%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSG 76
+ ++ ++ ++ ++++G G G+++ +L+ ++ + ++ ++++N AA+ G
Sbjct: 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKG 237
Query: 77 FHDRLNVISKDALKTEFPQFDLVV 100
DR+ I+ D K +P+ D V+
Sbjct: 238 VADRMRGIAVDIYKESYPEADAVL 261
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis
elegans} SCOP: c.66.1.17
Length = 314
Score = 36.6 bits (85), Expect = 0.004
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEILNR--RAADSGFHD-RLNVIS 85
VL IG G G L+ EV K KV EIDE ++++ + GF +L++
Sbjct: 112 VLIIGGGDG-GILR--EVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC 168
Query: 86 KDA---LKTEFPQFDLVVANI--PYGISSPL 111
D LK +FD+++ + P G + L
Sbjct: 169 GDGFEFLKNHKNEFDVIITDSSDPVGPAESL 199
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 36.6 bits (85), Expect = 0.005
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKT 91
+L+IG TG + ++ +K+V +D + +E++ ++ A +R++ + L
Sbjct: 182 RLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDR 241
Query: 92 EFP---QFDLVV 100
+ P FD V
Sbjct: 242 DVPFPTGFDAVW 253
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 36.4 bits (83), Expect = 0.005
Identities = 14/101 (13%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRR 71
T+ ++ ++ + + DD +++G G G + L++ + K + +E + +
Sbjct: 157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 216
Query: 72 AADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLV 112
+ F + K + + D + I++ V
Sbjct: 217 DRE--FRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSV 255
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 36.0 bits (84), Expect = 0.005
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 28 INPDDTVLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVE 66
+ P VLEIG G G +++ V +IE + E
Sbjct: 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAE 116
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.8 bits (82), Expect = 0.006
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 15/49 (30%)
Query: 168 RDFLPCP--KVDSSVVIIRP-KAE---------IPDVNLD---EWRAFT 201
L CP KV ++ R + + + D +D EWR F+
Sbjct: 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFS 67
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 36.2 bits (84), Expect = 0.007
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKT 91
TV+++ G G ++L ++ D + + R+ K+ L
Sbjct: 182 TVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDA 241
Query: 92 EFP---QFDLVV 100
D+V+
Sbjct: 242 RNFEGGAADVVM 253
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 35.9 bits (82), Expect = 0.007
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFH 78
I+ INP DTVLE G G+G ++L L + +V + E+ + ++ +
Sbjct: 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 156
Query: 79 DRLN 82
+L+
Sbjct: 157 WKLS 160
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 35.6 bits (83), Expect = 0.007
Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 28 INPDDTVLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVE 66
++ L++G G+G LT +++ + KV I+ + +V+
Sbjct: 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVD 116
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 36.0 bits (84), Expect = 0.008
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD 74
NQ+++ + + P+D VL++ G GN TL L + V +E +VE + A
Sbjct: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330
Query: 75 SGFH 78
+G
Sbjct: 331 NGLQ 334
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 36.0 bits (83), Expect = 0.008
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
++ +D V+++ G G ++ KK++AI+I+ +E+L + + ++ I D
Sbjct: 193 VSLNDVVVDMFAGVGPFSIACKNA-KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSD 251
Query: 88 ALKTEFPQFDLVVANIPYG 106
+ + + + V+ N+P
Sbjct: 252 VREVD-VKGNRVIMNLPKF 269
>2o07_A Spermidine synthase; structural genomics, structural genomics
consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo
sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A*
3rw9_A*
Length = 304
Score = 35.4 bits (82), Expect = 0.009
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEILNR--RAADSGFHD-RLNVIS 85
VL IG G G L+ EV K V EIDE ++++ + G+ +L +
Sbjct: 99 VLIIGGGDG-GVLR--EVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV 155
Query: 86 KDA---LKTEFPQFDLVV 100
D +K FD+++
Sbjct: 156 GDGFEFMKQNQDAFDVII 173
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein
structure initiative, structural GEN pathogenic protozoa
consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB:
3bwb_A*
Length = 304
Score = 35.4 bits (82), Expect = 0.011
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEILNRRAAD--SGFHD-RLNVIS 85
VL IG G G L+ EV + ++ID ++E + D R V
Sbjct: 99 VLIIGGGDG-GVLR--EVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV 155
Query: 86 KDALK----TEFPQFDLVVANI--PYGISSPLVAKLVYG 118
D L T +D+V+ + P G +S L + Y
Sbjct: 156 GDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYK 194
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 34.5 bits (80), Expect = 0.015
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 28 INPDDTVLEIGPGTG-------NLTLKLLEVSKKVHAIEIDERMVE 66
+ P +++G G+G L + V +E + +V
Sbjct: 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVN 123
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 34.9 bits (80), Expect = 0.015
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 28 INPDDTVLEIGPGTGNLTLKLL-EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
PD+ V+++ G G+L+L + KV AIE D + L + DR++ +
Sbjct: 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182
Query: 87 DALKTEFPQ-FDLVVANIPYG 106
D D ++
Sbjct: 183 DNRDFPGENIADRILMGYVVR 203
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 35.0 bits (81), Expect = 0.015
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKT 91
VL+I G + + + + +D ++E+ A G R + I+ A +
Sbjct: 168 KVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV 227
Query: 92 EFPQ-FDLVV 100
++ +DLV+
Sbjct: 228 DYGNDYDLVL 237
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 34.3 bits (78), Expect = 0.021
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
+ D +L +G +G + ++ +++ +E R++ L DR N+
Sbjct: 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVV-----RDRRNIF 129
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 34.3 bits (78), Expect = 0.021
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSG 76
+ ++ I D +L +G G + +++ V+AIE R++ L A
Sbjct: 63 IIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA--- 119
Query: 77 FHDRLNVI 84
+R N+I
Sbjct: 120 --ERENII 125
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.30A {Bacillus subtilis}
SCOP: c.66.1.17
Length = 275
Score = 34.1 bits (79), Expect = 0.024
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 22/94 (23%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEI------LNRRAADSGFHDRLN 82
VL +G G G ++ E+ K K ++ID +++E D R++
Sbjct: 79 VLVVGGGDG-GVIR--EILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD---DPRVD 132
Query: 83 VISKDA---LKTEFPQFDLVVANI--PYGISSPL 111
V D + Q+D+++ + P G + L
Sbjct: 133 VQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNL 166
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase,
rossmann fold, polyamine biosynthesis, spermidine
biosynthesis, transferase; 2.90A {Escherichia coli} PDB:
3o4f_A
Length = 294
Score = 34.2 bits (79), Expect = 0.027
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEI----LNRRAADSGFHDRLNVI 84
VL IG G G L+ EV++ + +EID +V L A S R ++
Sbjct: 87 VLIIGGGDG-AMLR--EVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLV 143
Query: 85 SKDA---LKTEFPQFDLVVANI--PYGISSPL 111
D + FD+++++ P G L
Sbjct: 144 IDDGVNFVNQTSQTFDVIISDCTDPIGPGESL 175
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Length = 385
Score = 34.2 bits (79), Expect = 0.030
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 54 KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYG 106
K++ +IDE ++I A +G + + DA + + +F ++ N PYG
Sbjct: 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYG 312
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 33.2 bits (76), Expect = 0.032
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
VL++G TG +T +L + V + +++ R +E R + D L I+++
Sbjct: 23 EMKIVLDLGTSTGVITEQLRK-RNTVVSTDLNIRALESH--RGGNLVRADLLCSINQE-- 77
Query: 90 KTEFPQFDLVVANIPYGISSPLVA 113
D+VV N PY +
Sbjct: 78 -----SVDVVVFNPPYVPDTDDPI 96
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural
genomics, PSI, protein structure initiative; 1.50A
{Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Length = 296
Score = 33.8 bits (78), Expect = 0.032
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 20/81 (24%)
Query: 34 VLEIGPGTGNLTLKLLEVSK-----KVHAIEIDERMVEI------LNRRAADSGFHDRLN 82
VL IG G G TL+ EV K K E+D ++E D R
Sbjct: 94 VLIIGGGDG-GTLR--EVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD---DPRAE 147
Query: 83 VISKDA---LKTEFPQFDLVV 100
++ + ++ +FD+++
Sbjct: 148 IVIANGAEYVRKFKNEFDVII 168
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 33.4 bits (77), Expect = 0.034
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 25 KSSINPDDTVLEIGPGTGNLT--------LKLLEVSKKVHAIEIDERMVE 66
+ + P +L++G G+G LT K ++ ++ IE +V
Sbjct: 79 RDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVR 128
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170,
putative RNA methylase, PSI,MCSG, structu genomics;
1.50A {Listeria monocytogenes str}
Length = 393
Score = 33.8 bits (78), Expect = 0.035
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 54 KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYG 106
+ +ID R++EI + A ++G D + + ++ +VVAN PYG
Sbjct: 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYG 318
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 33.8 bits (76), Expect = 0.036
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 25 KSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSG------- 76
+ D TVL++G G G LK + K+ +I + V+ +R D
Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY 88
Query: 77 -------FHDRLNVISKDALKTEFPQFDLVVAN 102
D + D + FD+
Sbjct: 89 IFSAEFITADSSKELLIDKFRDPQMCFDICSCQ 121
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 33.7 bits (76), Expect = 0.039
Identities = 12/101 (11%), Positives = 34/101 (33%), Gaps = 2/101 (1%)
Query: 14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRR 71
L + ++ + DT +++G G GN ++ EI + ++ +
Sbjct: 226 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 285
Query: 72 AADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLV 112
+ +L + + ++ + + + I V
Sbjct: 286 YEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDV 326
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 33.4 bits (76), Expect = 0.045
Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 11/100 (11%)
Query: 7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID--ERM 64
G + ++ + + VL+IG G G T + ++ +D +
Sbjct: 63 DAGHYQPLRDAIVAQLRERLDDKAT-AVLDIGCGEGYYTHAFADALPEITTFGLDVSKVA 121
Query: 65 VEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
+ + AA + ++ + + F D ++
Sbjct: 122 I----KAAAKR--YPQVTFCVASSHRLPFSDTSMDAIIRI 155
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 32.9 bits (76), Expect = 0.056
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGF 77
+D + K + P T+L++G G G ++ +E V + + + + + A+S
Sbjct: 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN 112
Query: 78 HDRLNVISKD 87
V+
Sbjct: 113 LRSKRVLLAG 122
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 33.0 bits (76), Expect = 0.068
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGF 77
+D + K + P T+L+IG G G + +E V + + + + A
Sbjct: 79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT 138
Query: 78 HDRLNVISKD 87
+ V+ +
Sbjct: 139 NRSRQVLLQG 148
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 33.0 bits (75), Expect = 0.070
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 32/145 (22%)
Query: 34 VLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA-- 88
+ +G G + + S+ +E+D + L+R D R+ + DA
Sbjct: 93 ITHLGGGACTMARYFADVYPQSR-NTVVELDAELAR-LSREWFDIPRAPRVKIRVDDARM 150
Query: 89 -LKTEFP-QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEF---ARRLLASPGD 143
++ P D+++ ++ G +P EF R LA G
Sbjct: 151 VAESFTPASRDVIIRDVFAGAITPQN---------------FTTVEFFEHCHRGLAPGG- 194
Query: 144 SEFNRLAVNVKLVADVEFVMDVSKR 168
N +D+
Sbjct: 195 ----LYVANCGDHSDLRGAKSELAG 215
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase,
transferase; HET: SAH; 1.96A {Streptococcus mutans}
Length = 384
Score = 32.7 bits (75), Expect = 0.088
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 54 KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYG 106
+ + D RMVEI + A + G D + + + ++++N PYG
Sbjct: 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYG 311
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 32.2 bits (74), Expect = 0.096
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGF 77
+ K ++ P T+L+IG G G+ + V + + E +
Sbjct: 61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS 120
Query: 78 HDRLNVISKD 87
R V +
Sbjct: 121 PRRKEVRIQG 130
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET:
SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A*
3pb3_A* 3mte_A*
Length = 225
Score = 32.1 bits (72), Expect = 0.098
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVSKK--VHAIEIDERMVEILNRRAADSGFHDRL-NVI 84
D +++G G G KL + I+ + + ++++ L NV+
Sbjct: 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVV 81
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 32.4 bits (73), Expect = 0.10
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 27 SINPDDTVLEIGPGTGNLTLKLLEVS----KKVHAIEIDERMVEILNRRAADSGFHDRLN 82
+ + +++ G G L+ V+ ++V IE D ++ L + +
Sbjct: 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFAS 282
Query: 83 VI 84
I
Sbjct: 283 RI 284
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal
domain, methyltransferase, plasmid, transferase; HET:
SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Length = 253
Score = 32.1 bits (72), Expect = 0.11
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 11 HILTNQRV--LDSIVRK-SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
H T +R+ LD++ S VL+I G L L ++ V +I + + ++
Sbjct: 83 HASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLALYERGIAS-VWGCDIHQGLGDV 141
Query: 68 LNRRAADSGFHDRLNVISKDALKTEFPQ-FDLVVA 101
+ +D L + DL +
Sbjct: 142 IT--PFAREKDWDFTFALQDVLCAPPAEAGDLALI 174
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 31.9 bits (73), Expect = 0.17
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 54 KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD----LVVANIPYG 106
+ + D R+++ A +G + + KD + P V++N PYG
Sbjct: 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYG 314
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 31.8 bits (73), Expect = 0.17
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 23 VRKSSINPDDTVLEIGPGT-GNLTLKLLEVS--KKVHAIEI-DERMVEILNRRAADSGFH 78
V S I TV +G G G LT++L ++ V + R A + G
Sbjct: 175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKR-----RLAEEVGAT 229
Query: 79 DRLNVISKDALK 90
++ + D ++
Sbjct: 230 ATVDPSAGDVVE 241
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 31.9 bits (72), Expect = 0.17
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 34 VLEIGPG-TGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92
VL +G G G L+ V+ +++ +E + + +++ + D L
Sbjct: 19 VLILGAGNIGRAIAWDLKDEFDVYIGDVNNENLE----KVKEFATPLKVDASNFDKLVEV 74
Query: 93 FPQFDLVVANIPYGISSPLVAKLV-----YGTKSFRSATLLLQKEFARR 136
+F+LV+ +P + + + SF L ++ A +
Sbjct: 75 MKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEK 123
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 31.5 bits (72), Expect = 0.18
Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKT 91
+ +++G G+G LT +L+ + +D E + + + +R++++ D L+
Sbjct: 170 SFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE 229
Query: 92 EFPQFDLVV 100
D+ +
Sbjct: 230 VPSNGDIYL 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.22
Identities = 23/197 (11%), Positives = 62/197 (31%), Gaps = 57/197 (28%)
Query: 16 QRVLDSIVRKSSIN--PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAA 73
V++ + + S + P ++ + I +I ++ ++ ++ N A
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI------------------PSIYLELKV-KLENEYA- 444
Query: 74 DSGFHDRLNVISKDALKTEFPQFDLVVAN--------IPYGISSPLVAKLVYGTKSFRSA 125
H + + + F DL+ I + + + + + FR
Sbjct: 445 ---LHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM---TLFR-- 494
Query: 126 TLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVE----FVMDVSKR---------DFLP 172
+ L F + + + +N + + ++ ++ D + DFLP
Sbjct: 495 MVFLDFRFLEQKIRHDS-TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 173 CPKVDSSVVIIRPKAEI 189
+I ++
Sbjct: 554 KI---EENLICSKYTDL 567
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 31.2 bits (70), Expect = 0.26
Identities = 12/93 (12%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
+ +++G G T +L++ + V++++ M + L ++ + +D
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQSLMD-------TGQVTWLRED 260
Query: 88 ALKTEFPQ--FDLVVA--NIPYGISSPLVAKLV 116
K + +V + L+A+ +
Sbjct: 261 GFKFRPTRSNISWMVCDMVEKPAKVAALMAQWL 293
>2cmg_A Spermidine synthase; transferase, putrescine
aminopropyltransferase, spermidine biosynthesis,
polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori}
PDB: 2cmh_A
Length = 262
Score = 30.9 bits (70), Expect = 0.26
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD-RLNVISKDA--- 88
VL + L +L + + ++ DE++++ FH+ + N A
Sbjct: 75 EVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPH--FHEVKNNKNFTHAKQL 132
Query: 89 LKTEFPQFDLVV 100
L + ++DL+
Sbjct: 133 LDLDIKKYDLIF 144
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 30.6 bits (70), Expect = 0.33
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 23 VRKSSINPDDTVLEIGPGT-GNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHD 79
+ + V+ IG GT G L ++ K V AI+I + + A G
Sbjct: 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLAL----AKSFGAMQ 208
Query: 80 RLNVISKDALK-----TEFPQFDLVV 100
N A + E L++
Sbjct: 209 TFNSSEMSAPQMQSVLRELRFNQLIL 234
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 30.7 bits (70), Expect = 0.33
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
+LE+ G GN +L L +V A EI + V A +
Sbjct: 212 GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHID 261
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 30.4 bits (69), Expect = 0.43
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKT 91
VL++G G G + + + + ++ E RR AD+G DR+ V D K
Sbjct: 185 HVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP 244
Query: 92 EFPQFDLVV 100
D+V+
Sbjct: 245 LPVTADVVL 253
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure
INI northeast structural genomics consortium, unknown
function; 2.10A {Rhodopseudomonas palustris} SCOP:
c.66.1.52
Length = 387
Score = 30.0 bits (68), Expect = 0.54
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKK---------VHAIEIDERMVEILNRRAADSGFHDRLNV 83
++EIGPG G + L + VH +EI+ + + A N+
Sbjct: 83 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIR-----NI 137
Query: 84 ISKDALKTEFPQFDLVVAN 102
D+ + +++AN
Sbjct: 138 HWHDSFEDVPEGPAVILAN 156
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 29.4 bits (67), Expect = 0.85
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 33 TVLEIGPGTGNLTLKLL-EVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKD--- 87
+L++G GTG + L L E ++ A++ V + R A ++++ D
Sbjct: 112 RILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFS 170
Query: 88 ALKTEFPQFDLVVANIPY 105
AL + QF ++V+N PY
Sbjct: 171 ALAGQ--QFAMIVSNPPY 186
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide
complex, ADP-ribosylation, arginine finger binding,
lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A
{Homo sapiens}
Length = 40
Score = 26.6 bits (58), Expect = 0.94
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD 97
E +VE+LNR SG HD+ ++S + + FD
Sbjct: 3 EGLVELLNR-VQSSGAHDQRGLLSNEEVFRALRDFD 37
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA
methylase, type I restriction enzyme ST protein; HET:
SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP:
c.66.1.45
Length = 445
Score = 28.8 bits (65), Expect = 1.5
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 79 DRLNVISKDAL-KTEFPQFDLVVANIPYGIS 108
DR ++ +D+L K D+++AN P+G
Sbjct: 236 DRSPIVCEDSLEKEPSTLVDVILANPPFGTR 266
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH;
2.70A {Vaccinia virus}
Length = 302
Score = 28.6 bits (63), Expect = 1.5
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 24 RKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAAD 74
+ VL I G G K + A + D + N R
Sbjct: 42 TFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNK 93
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 28.6 bits (63), Expect = 1.6
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN-------RRA 72
+ I + + TV + G G + L + V A E + +L+
Sbjct: 73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNP 132
Query: 73 ADSGFHDRLNVISKDAL 89
R+N+ +A
Sbjct: 133 ETQDTAARINLHFGNAA 149
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 28.5 bits (64), Expect = 1.8
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 22 IVRKSSINPDDTVLEIGPGT-GNLTLKLLEVS--KKVHAIEIDERMVEILNRR--AADSG 76
IVR I P D V+ +G G G + +L+ + KV E E RR A + G
Sbjct: 205 IVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSE------VRRNLAKELG 258
Query: 77 FHDRLNVISKDALK 90
++ ++ ++
Sbjct: 259 ADHVIDPTKENFVE 272
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 28.4 bits (64), Expect = 2.1
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKT 91
V+++G G+G L LL + + +D + +RR D+G R V+
Sbjct: 172 HVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP 231
Query: 92 EFPQFDLVV 100
V
Sbjct: 232 LPAGAGGYV 240
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 28.0 bits (63), Expect = 2.5
Identities = 12/86 (13%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 23 VRKSSINPDDTVLEIGPGT-GNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHD 79
++++ + D VL G G G +T+ + + + +IDE ++ + H
Sbjct: 172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHK 231
Query: 80 RLNVISKDALK-----TEFPQFDLVV 100
+ ++++ K + + +
Sbjct: 232 VERLSAEESAKKIVESFGGIEPAVAL 257
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 28.3 bits (62), Expect = 2.5
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 34 VLEIGPG-TGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDALKT 91
VL +G G + L + ++ + + R + A SG L+V AL
Sbjct: 26 VLLLGSGFVAQPVIDTLAANDDIN-VTVACRTLANAQALAKPSGSKAISLDVTDDSALDK 84
Query: 92 EFPQFDLVVANIPYGISSPLV-----AKLVYGTKSFRSATLLLQKEFARR 136
D+V++ IPY +V K T S+ S L + +
Sbjct: 85 VLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVK 134
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 28.1 bits (63), Expect = 2.7
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 74 DSGFHDRLNVISKDAL---KTEFPQFDLVVANIPYGISS 109
+ + + L P+ +V N P+G ++
Sbjct: 237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA 275
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 27.9 bits (63), Expect = 3.0
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNV-ISKDA 88
+ +L++ G G + L + V + +E +E+ R +
Sbjct: 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD---AEFEVASD 346
Query: 89 LKTEFPQFDLVV 100
+ FD V+
Sbjct: 347 REVSVKGFDTVI 358
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 27.5 bits (60), Expect = 3.2
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSG 76
+ VLE+G G K+ E + IE ++ + + L A
Sbjct: 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT 107
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 27.6 bits (60), Expect = 4.0
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 33 TVLEIGPG--TGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
+VL +G G T L + KV + L+ S L+V AL
Sbjct: 5 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPI-SLDVNDDAALD 63
Query: 91 TEFPQFDLVVANIPYGISSPLV-----AKLVYGTKSFRSATLLLQKEFARR 136
E + DLV++ IPY + ++ K T S+ S ++ + A+
Sbjct: 64 AEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKD 114
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 27.3 bits (61), Expect = 4.0
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 33 TVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKT 91
VL++G G G + + V A ++ V+ D G DR++V+ D +
Sbjct: 186 HVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP 245
Query: 92 EFPQFDLVV 100
+ D ++
Sbjct: 246 LPRKADAII 254
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 27.4 bits (60), Expect = 4.2
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 14/113 (12%)
Query: 1 YIFFHKSKGQHILTNQRV-LDSIVRKSSINPDD--TVLEIGPGTGNLTLKLLEVSKKVHA 57
++ F H +++ + I D V++ G G L V +V
Sbjct: 56 FVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRM 115
Query: 58 IEIDERMVEILN---RRAADSGFH-----DRLNVI---SKDALKTEFPQFDLV 99
+E + + +L+ R +RL +I S AL P+ +V
Sbjct: 116 LERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 27.0 bits (59), Expect = 5.0
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLN---V 83
DD VL++G G G K+ S+ V A++ D+ +E ++ +AA L
Sbjct: 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLY 85
Query: 84 ISKDALKTEFPQFDLVVANIPY 105
+ A + P + ++
Sbjct: 86 LWATA-ERLPPLSGVGELHVLM 106
>3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A
{Gibberella zeae}
Length = 445
Score = 27.0 bits (60), Expect = 5.9
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 17/67 (25%)
Query: 16 QRVLDSIVRKSSINPDDTVLEI--GPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAA 73
+R + +V + ++ D + + GPG G +E+D + L+++
Sbjct: 374 KRRDEDVVIEGALKWKDGGVIVPSGPGLG---------------VELDRERLAKLHQQYV 418
Query: 74 DSGFHDR 80
D G R
Sbjct: 419 DCGLKKR 425
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 26.6 bits (59), Expect = 7.5
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGT-GNLTLKLLEVS--KKVHAIEIDERMVEI 67
IL Q+ + VL +G G G L L + A + VE
Sbjct: 161 EILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQ 220
Query: 68 LNRRAADSGFHDRLNVISKDALKTEFPQFDLVV 100
++ + + D LK +FD+++
Sbjct: 221 --TVIEETKTNYYNSSNGYDKLKDSVGKFDVII 251
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 26.3 bits (59), Expect = 8.0
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 33 TVLEIGPGTG--NLTLKLLEVSKKVHAIEIDERMVEI--LNRRA--ADSGFH--DRLNVI 84
V+++G G+G +++ L V A+++ + + N A + D + +
Sbjct: 33 RVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWL 92
Query: 85 SKDALKTEFPQFDLVVANIPY 105
+ A + + +V+N PY
Sbjct: 93 IERAERGR--PWHAIVSNPPY 111
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 26.4 bits (59), Expect = 8.1
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 23 VRKSSINPDDTVLEIGPGT-GNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHD 79
R+ + VL G G G +TL + + +V ++ + A + G
Sbjct: 164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK----AKEIGADL 219
Query: 80 RLNVISKDA 88
L + +
Sbjct: 220 VLQISKESP 228
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 26.0 bits (58), Expect = 8.8
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 53 KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK------TEFPQFDLVVANIPYG 106
K IE + ++++ A + ++ V DA + E QFDLV+ + PY
Sbjct: 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 127
>3lkd_A Type I restriction-modification system methyltransferase subunit;
Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics,
PSI-2; 2.25A {Streptococcus thermophilus}
Length = 542
Score = 26.5 bits (59), Expect = 9.1
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 84 ISKDALKTEFPQFDLVVANIPYGIS 108
+ +D E FD V+ N PY
Sbjct: 286 LDEDWPTQEPTNFDGVLMNPPYSAK 310
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.89A {Parabacteroides distasonis}
Length = 238
Score = 26.0 bits (58), Expect = 9.1
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 34 VLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
L+ N+ L + E+ K E + + + R + IS
Sbjct: 88 YLKRAKKLKNIRL-IFEL-KSHDTPERNRDAARLSVQMVKRMKLAKRTDYIS 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.382
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,429,347
Number of extensions: 202078
Number of successful extensions: 737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 223
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)