BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047902
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXC|A Chain A, Seramidase Complexed With C2
pdb|2ZXC|B Chain B, Seramidase Complexed With C2
pdb|2ZWS|A Chain A, Crystal Structure Analysis Of Neutral Ceramidase From
Pseudomonas Aeruginosa
Length = 646
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 258/722 (35%), Positives = 379/722 (52%), Gaps = 90/722 (12%)
Query: 3 YLVGVGSYDMTGPAAGTNMMGYANLFQNTAGIHFRLRARTFIVAESSNGTRFAFVNLDAG 62
Y G+G D+TG AA MMGY++L Q TAGIH R AR F++ E+++G R +VN D G
Sbjct: 5 YRFGLGKADITGEAAEVGMMGYSSLEQKTAGIHMRQWARAFVIEEAASGRRLVYVNTDLG 64
Query: 63 MASQLVTTKVLEKLKTRFGNLYTEENIAISGIHTHAGPGGYLQYLIYSITSLGFVQQSFD 122
M Q V KVL +LK ++ +Y E N+ ++ HTH+GPGG+ Y +Y+++ LGF +++F+
Sbjct: 65 MIFQAVHLKVLARLKAKYPGVYDENNVMLAATHTHSGPGGFSHYAMYNLSVLGFQEKTFN 124
Query: 123 AIVSAIVQSIVQAHNNLKPGSIFIRKGDVENAGINRSPSAYLLNPAEERARYPENVDKEM 182
AIV IV+SI +A L+PG +F G++ NA NRS ++L NP + A Y + +D +M
Sbjct: 125 AIVDGIVRSIERAQARLQPGRLFYGSGELRNASRNRSLLSHLKNP--DIAGYEDGIDPQM 182
Query: 183 TLLKFVDAASGKSIGAFNWYATHGTSMSRDNLLISGDNKGAAARFFEDWFSSKNESSSIT 242
++L FVDA +G+ GA +W+ H TSM+ N LIS DNKG A+ +E S K
Sbjct: 183 SVLSFVDA-NGELAGAISWFPVHSTSMTNANHLISPDNKGYASYHWEHDVSRK------- 234
Query: 243 TNIGKLMEKSKTIKATGGQQCGKTTSQGFKVRKNDGSLFVGAFCQSNVGDVTPNVLGAFC 302
S FV AF Q+N G+++PN+
Sbjct: 235 ------------------------------------SGFVAAFAQTNAGNLSPNL----- 253
Query: 303 IDSGKPCDFNHSSCHGDDQLCIGRGPGYPDEILSTKIIGERQFQKAVDLFNSATDQLSGK 362
L G GP + +E +T+ IG RQF KA ++ A +++ G+
Sbjct: 254 ------------------NLKPGSGP-FDNEFDNTREIGLRQFAKAYEIAGQAQEEVLGE 294
Query: 363 IDYRHVYINFTNIEVVLDGTGNNTVKTCPAALGPGFAAGTT-DGPGVFGFQQGDTEINKL 421
+D R +++FT + + + T + C AA+G AAG+T DGPG G ++G+ N
Sbjct: 295 LDSRFRFVDFTRLPIRPEFTDGQPRQLCTAAIGTSLAAGSTEDGPGPLGLEEGN---NPF 351
Query: 422 WKQLRDVLKK-PSQYQEECQKPKAVLLSSGEMFEPYAWAPAVLPIQILRLGKLIILSVPG 480
L +L P Q +CQ K +L +G +PY W P VLPIQ+ R+G+L +L P
Sbjct: 352 LSALGGLLTGVPPQELVQCQAEKTILADTGNK-KPYPWTPTVLPIQMFRIGQLELLGAPA 410
Query: 481 EFTTMAGRRLREAVKDTLINNGNGEFDNDTHIVIAGLTNAYSQYIATFEEYAHQRYEAAS 540
EFT MAG R+R AV+ E H+V G NAY+ Y+ T EEYA Q YE S
Sbjct: 411 EFTVMAGVRIRRAVQ------AASEAAGIRHVVFNGYANAYASYVTTREEYAAQEYEGGS 464
Query: 541 TLYGPHTLPAYIQEFKKLAQAMAKGEKTTKGPSPPDLSSVQLSLSLNPTGDSPPAGKMFG 600
TLYGP T AY Q F +A A+ + PDLS Q++ D P GK FG
Sbjct: 465 TLYGPWTQAAYQQLFVDMAVALRERLPVETSAIAPDLSCCQMNFQTGVVADDPYIGKSFG 524
Query: 601 DIKEDINQPKDGSFNKGDRPSATFWSANPRYDLLTEGTY-AVVEMLQGKRWIP--VYDDD 657
D+ + QP++ S+ GD+ + F + +P+ DL TE T+ VV + + + P V D+
Sbjct: 525 DV---LQQPRE-SYRIGDKVTVAFVTGHPKNDLRTEKTFLEVVNIGKDGKQTPVTVATDN 580
Query: 658 DFSLYFKWSLENTSFHGLATIEWEVPTKAIPGVYRLRHFGSSKKAVNSTNHYFTGASSAF 717
D+ ++W S ATI W +P PG Y +RH+G++K G++ +F
Sbjct: 581 DWDTQYRWERVGIS-ASKATISWSIPPGTEPGHYYIRHYGNAKNFWTQKISEIGGSTRSF 639
Query: 718 TV 719
V
Sbjct: 640 EV 641
>pdb|3D54|B Chain B, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|C Chain C, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|F Chain F, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|G Chain G, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|J Chain J, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|K Chain K, Stucture Of Purlqs From Thermotoga Maritima
Length = 82
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 434 QYQEECQKPKAVLLSSGEMFEPYAWAPAVLPIQILRLGKLIILSVPGEFTTMAGRRLREA 493
QY+ + P+ GE E LP++ LRLGK I L V E A +++A
Sbjct: 11 QYRSNVRDPR------GETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVKKA 64
Query: 494 VKDTLIN 500
++ L+N
Sbjct: 65 CEELLVN 71
>pdb|1VQ3|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Synthase, Purs Subunit (Ec 6.3.5.3) (Tm1244) From
Thermotoga Maritima At 1.90 A Resolution
pdb|1VQ3|B Chain B, Crystal Structure Of Phosphoribosylformylglycinamidine
Synthase, Purs Subunit (Ec 6.3.5.3) (Tm1244) From
Thermotoga Maritima At 1.90 A Resolution
pdb|1VQ3|C Chain C, Crystal Structure Of Phosphoribosylformylglycinamidine
Synthase, Purs Subunit (Ec 6.3.5.3) (Tm1244) From
Thermotoga Maritima At 1.90 A Resolution
pdb|1VQ3|D Chain D, Crystal Structure Of Phosphoribosylformylglycinamidine
Synthase, Purs Subunit (Ec 6.3.5.3) (Tm1244) From
Thermotoga Maritima At 1.90 A Resolution
Length = 94
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 434 QYQEECQKPKAVLLSSGEMFEPYAWAPAVLPIQILRLGKLIILSVPGEFTTMAGRRLREA 493
QY+ + P+ GE E LP++ LRLGK I L V E A +++A
Sbjct: 23 QYRSNVRDPR------GETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVKKA 76
Query: 494 VKDTLIN 500
++ L+N
Sbjct: 77 CEELLVN 83
>pdb|3PME|A Chain A, Crystal Structure Of The Receptor Binding Domain Of
Botulinum Neurotoxin CD MOSAIC SEROTYPE
pdb|4F83|A Chain A, Crystal Structure Of The Receptor Binding Domain Of
Botulinum Neurotoxin Mosaic Serotype CD WITH A
TETRAETHYLENE GLYCOL MOLECULE Bound On The Hcn
Sub-Domain And A Sulfate Ion At The Putative Active Site
Length = 420
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 248 LMEKSKTIKATGGQQCGKTTSQGFKVRKNDGSLFVGAFCQSNV 290
++ + TI AT G QC K K++ N G+ +G F N+
Sbjct: 306 IIRDTDTIYATQGGQCSKNCVYALKLQSNLGNYGIGIFSIKNI 348
>pdb|3LXY|A Chain A, Crystal Structure Of 4-Hydroxythreonine-4-Phosphate
Dehydrogenase From Yersinia Pestis Co92
Length = 334
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 68 VTTKVLEKLKTRFGNLYTEENIAISGIHTHAGPGGYL 104
V T + LKT+FG T+ I + G++ HAG GG++
Sbjct: 188 VITILDNDLKTKFG--ITQPQIYVCGLNPHAGEGGHM 222
>pdb|4G4G|A Chain A, Crystal Structure Of Recombinant Glucuronoyl Esterase From
Sporotrichum Thermophile Determined At 1.55 A Resolution
Length = 433
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 255 IKATGGQQCGKTTSQGFKVRKNDGSLFVGAF--CQ--SNVGDVTPNVLGAFCIDSGKPCD 310
+ TG G+ + + V N G VG CQ S+ + + F + G P
Sbjct: 328 VSTTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQFPSSQNQDLNSYINYFLLGQGSPSG 387
Query: 311 FNHSSCHGDDQLCIGRGPGYPDEILSTKIIGERQFQKAVD 350
HS + + G G P L K+I E AVD
Sbjct: 388 VEHSDVNVNVAEWAPWGAGAPTLALEQKLISEEDLNSAVD 427
>pdb|4G4I|A Chain A, Crystal Structure Of Glucuronoyl Esterase S213a Mutant
From Sporotrichum Thermophile Determined At 1.9 A
Resolution
pdb|4G4J|A Chain A, Crystal Structure Of Glucuronoyl Esterase S213a Mutant
From Sporotrichum Thermophile In Complex With Methyl
4-o-methyl-beta-d- Glucopyranuronate Determined At 2.35
A Resolution
Length = 433
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 255 IKATGGQQCGKTTSQGFKVRKNDGSLFVGAF--CQ--SNVGDVTPNVLGAFCIDSGKPCD 310
+ TG G+ + + V N G VG CQ S+ + + F + G P
Sbjct: 328 VSTTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQFPSSQNQDLNSYINYFLLGQGSPSG 387
Query: 311 FNHSSCHGDDQLCIGRGPGYPDEILSTKIIGERQFQKAVD 350
HS + + G G P L K+I E AVD
Sbjct: 388 VEHSDVNVNVAEWAPWGAGAPTLALEQKLISEEDLNSAVD 427
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,073,215
Number of Sequences: 62578
Number of extensions: 1042282
Number of successful extensions: 2074
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2062
Number of HSP's gapped (non-prelim): 16
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)