Query 047902
Match_columns 720
No_of_seqs 224 out of 539
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:24:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2232 Ceramidases [Signal tr 100.0 5E-201 1E-205 1589.5 49.6 691 1-720 30-734 (734)
2 PTZ00487 ceramidase; Provision 100.0 5E-189 1E-193 1605.9 71.8 667 2-720 39-715 (715)
3 PF04734 Ceramidase_alk: Neutr 100.0 2E-189 3E-194 1623.6 54.9 669 2-720 1-674 (674)
4 COG3356 Predicted membrane pro 97.3 0.002 4.4E-08 73.6 12.0 117 21-152 413-533 (578)
5 PF09843 DUF2070: Predicted me 97.1 0.0051 1.1E-07 61.7 11.2 102 37-152 60-163 (179)
6 PF01835 A2M_N: MG2 domain; I 94.2 0.46 1E-05 42.3 10.0 76 612-698 9-86 (99)
7 PTZ00397 macrophage migration 52.2 36 0.00079 31.3 5.9 44 51-96 55-103 (116)
8 PF01282 Ribosomal_S24e: Ribos 49.2 41 0.0009 29.7 5.4 37 63-101 9-45 (84)
9 PF10633 NPCBM_assoc: NPCBM-as 41.8 32 0.00069 29.3 3.5 22 675-696 51-74 (78)
10 PF07485 DUF1529: Domain of Un 40.9 79 0.0017 30.1 6.3 45 43-98 47-91 (123)
11 PRK10301 hypothetical protein; 38.2 1.8E+02 0.004 27.4 8.4 7 618-624 46-52 (124)
12 PF14552 Tautomerase_2: Tautom 37.5 44 0.00096 29.3 3.8 46 51-98 26-76 (82)
13 PF15418 DUF4625: Domain of un 36.2 74 0.0016 30.5 5.4 41 656-696 74-114 (132)
14 TIGR03769 P_ac_wall_RPT actino 36.2 30 0.00065 26.5 2.2 24 679-706 6-29 (41)
15 PF01960 ArgJ: ArgJ family; I 34.4 1.2E+02 0.0026 34.4 7.4 48 36-94 52-101 (388)
16 PF10342 GPI-anchored: Ser-Thr 31.2 88 0.0019 27.0 4.7 81 612-719 7-93 (93)
17 PF04234 CopC: CopC domain; I 26.8 4.3E+02 0.0092 23.5 8.5 78 600-695 12-96 (97)
18 TIGR03196 pucD xanthine dehydr 26.7 2.8E+02 0.006 34.4 9.4 98 51-151 476-574 (768)
19 PTZ00450 macrophage migration 25.7 1.6E+02 0.0034 27.5 5.5 49 43-95 49-102 (113)
20 COG1470 Predicted membrane pro 25.5 92 0.002 35.9 4.6 43 658-700 425-470 (513)
21 KOG3006 Transthyretin and rela 23.8 1.4E+02 0.0031 28.3 4.7 18 679-696 67-85 (132)
22 TIGR02962 hdxy_isourate hydrox 23.8 1.2E+02 0.0025 28.4 4.3 12 685-696 54-65 (112)
23 COG3657 Uncharacterized protei 23.4 38 0.00083 30.7 1.0 26 286-330 36-61 (100)
24 PRK01178 rps24e 30S ribosomal 22.0 1.8E+02 0.0039 26.7 5.0 47 53-101 17-63 (99)
25 PF09580 Spore_YhcN_YlaJ: Spor 21.5 1.9E+02 0.0041 28.5 5.6 45 39-93 92-140 (177)
26 PRK15036 hydroxyisourate hydro 20.6 1.4E+02 0.0029 28.9 4.2 11 686-696 80-90 (137)
27 PF00868 Transglut_N: Transglu 20.1 3.7E+02 0.008 25.1 6.9 67 616-695 48-114 (118)
No 1
>KOG2232 consensus Ceramidases [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-201 Score=1589.48 Aligned_cols=691 Identities=59% Similarity=1.012 Sum_probs=668.6
Q ss_pred CceEEEEEEEeccCCCCccccccccCCCCccceeecceEEEEEEEEeCCCCCEEEEEEeccccccHHHHHHHHHHHHHHh
Q 047902 1 GQYLVGVGSYDMTGPAAGTNMMGYANLFQNTAGIHFRLRARTFIVAESSNGTRFAFVNLDAGMASQLVTTKVLEKLKTRF 80 (720)
Q Consensus 1 ~~~~vG~a~~DITgP~~~v~m~GYa~~~~~a~Gihd~L~ARA~vl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~ 80 (720)
++|+||+|++|||||+++|+||||++..|.+.|||.||+|||||++++ .++|++||++|.+|+++.++.+|.+||+++|
T Consensus 30 s~Y~iGvG~~DiTGp~advNmMGYan~~QvasGIh~Rl~aRaFIvaep-~gnRv~FVs~DagM~sq~lkleVi~RLqarY 108 (734)
T KOG2232|consen 30 SQYLIGVGSYDITGPAADVNMMGYANSEQVASGIHFRLRARAFIVAEP-QGNRVAFVSLDAGMASQGLKLEVIERLQARY 108 (734)
T ss_pred cceEeecccccccCChhheeeccccchhhhhchheeeeeeeeEEEecC-CCceEEEEecchhhhhhhhHHHHHHHHHHhh
Confidence 469999999999999999999999999999999999999999999997 6899999999999999999999999999999
Q ss_pred CCCCCCCcEEEEeeecCCCCCcCchhhhccccccccchHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEecCccccCCh
Q 047902 81 GNLYTEENIAISGIHTHAGPGGYLQYLIYSITSLGFVQQSFDAIVSAIVQSIVQAHNNLKPGSIFIRKGDVENAGINRSP 160 (720)
Q Consensus 81 G~~i~~~nViisaTHTHSgP~g~~~~~~~~~~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NRs~ 160 (720)
|++|.++||+||+||||+||+||++|++|.++++||.++.|+.+|++|.++|.+||+||+|++|.+++|++.++++||||
T Consensus 109 G~lY~~~NVaiSGtHTHagPgGylqy~~y~vtslGFv~QsF~~mv~Gi~~sI~qAhenlrpG~iflnkg~llda~vNRSP 188 (734)
T KOG2232|consen 109 GNLYTEDNVAISGTHTHAGPGGYLQYVLYIVTSLGFVRQSFDVMVDGIEQSIIQAHENLRPGSIFLNKGELLDAGVNRSP 188 (734)
T ss_pred cccccccceeEecccccCCCcceeeeeeeeehhcccchHHHHHHHHHHHHHHHHHHhcCCCCeEEecccceecccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCHhhhhcCCCCCCCeeEEEEEEECCCCceEE---EEEeeeecccccC---CCCcccc---CChHhHHHHHHHHH
Q 047902 161 SAYLLNPAEERARYPENVDKEMTLLKFVDAASGKSIG---AFNWYATHGTSMS---RDNLLIS---GDNKGAAARFFEDW 231 (720)
Q Consensus 161 ~ay~~NP~~er~~~~~~vD~~~~vL~f~~~~dG~~ia---~L~~yA~HpTsl~---~~n~lIS---~D~~G~a~~~lE~~ 231 (720)
++|++||++||++|+.++|++|++|||.+. .+.++| +..||++|+++|+ +.|+++| +||.||++++||++
T Consensus 189 ssYL~NPa~ERsky~~d~DKemtllkfVD~-q~~~~Gar~m~dWf~~h~~~~n~~~n~~r~Vss~isd~~~~a~~Lle~~ 267 (734)
T KOG2232|consen 189 SSYLNNPAEERSKYEYDVDKEMTLLKFVDL-QWGPLGARFMEDWFEVHNGSMNSSRNSPRRVSSIISDNVGYASLLLEKA 267 (734)
T ss_pred hHHhcChHhhhhcCccccCceeEEEEEEec-cCCccchHHHHHHHHhcccccccccCCcceecccccccccHHHHHHHHh
Confidence 999999999999999999999999999998 677999 5999999999999 8999999 99999999999987
Q ss_pred hcCCCCCCcchhcchhhhhhhhhhhccCCCccCcccccccccccCCCCceEEEEEcccccCCCcCCCCcccccCCCCCCC
Q 047902 232 FSSKNESSSITTNIGKLMEKSKTIKATGGQQCGKTTSQGFKVRKNDGSLFVGAFCQSNVGDVTPNVLGAFCIDSGKPCDF 311 (720)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvsPn~~g~~~~d~g~~c~~ 311 (720)
.+ ....+|.++++.++.++..+..+++.||+||||+|+||||||++|++|.|||+||||
T Consensus 268 ~~---------------------~~~~pG~~v~~~~~~~~rvr~~~k~~FVsAFcqsN~GDVSPNilG~~CidtG~~Cd~ 326 (734)
T KOG2232|consen 268 SN---------------------PNSMPGKSVTRSSSVARRVRNADKGKFVSAFCQSNCGDVSPNILGPFCIDTGLPCDF 326 (734)
T ss_pred hC---------------------cccCCCcccccchhhhhhhhcccccchhhhhhhccCCCCCcccccchhhcCCCcccc
Confidence 53 468899999999999998888889999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCCCCcchhhHHHHHHHHHHHHHHHHHhhccccccCCceeEEEEeeeeeeEeecCCC--CCccccc
Q 047902 312 NHSSCHGDDQLCIGRGPGYPDEILSTKIIGERQFQKAVDLFNSATDQLSGKIDYRHVYINFTNIEVVLDGT--GNNTVKT 389 (720)
Q Consensus 312 ~~s~c~~~~~~~~~~GP~~~d~~~~~~~iG~~~~~~A~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~p~~--~~~~~~t 389 (720)
.||||+|++++|.++||+++||||+++|||+||++.|++||++++++++|+|+++|+||||+++.|.+|.. ..+.++|
T Consensus 327 ~~StC~g~~~~C~~rGPG~pD~FeSTrIiGer~~k~A~eLfnkaSeevqG~v~~~H~~vD~s~l~vt~n~~~~~se~vkt 406 (734)
T KOG2232|consen 327 NHSTCPGGNEMCYGRGPGYPDEFESTRIIGERQFKMALELFNKASEEVQGKVDYRHQYVDFSNLNVTLNKLSGKSEVVKT 406 (734)
T ss_pred ccCcCCCCCcceeccCCCCcchhhhhhHHhHHHHHHHHHHHHhhHHHhcCcccceeEeeccccceeEecCcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754 5578999
Q ss_pred cccccCccccccccCCCCccccccCcccchhhHHHhhhhhcCCchhhhhhcCCccEEecCCCCCCCCcCCCceeeEEEEE
Q 047902 390 CPAALGPGFAAGTTDGPGVFGFQQGDTEINKLWKQLRDVLKKPSQYQEECQKPKAVLLSSGEMFEPYAWAPAVLPIQILR 469 (720)
Q Consensus 390 c~~a~G~sfaaGt~DG~g~~~f~qg~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~~~p~~~~vqilr 469 (720)
||||||++|||||+||||+|+|+||++.+||||+++|++|+.|++|+.+||+||||||+||+|++||+|+|.||++||||
T Consensus 407 C~~AmGf~FAAGTtDGpGafdF~QG~~~gnpfW~~VRn~l~~P~~e~i~Ch~PKPILL~TGemt~PydW~P~Iv~~Qilr 486 (734)
T KOG2232|consen 407 CPAAMGFSFAAGTTDGPGAFDFTQGDDQGNPFWRLVRNVLKTPTEEQIKCHKPKPILLDTGEMTKPYDWAPSIVSVQILR 486 (734)
T ss_pred CcccccccccccccCCCCccccccCCcCCChHHHHHHHHHcCCCHHHhcccCCCceEecccccCCCcCCCccccchheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCEEEEecCCchhHHHHHHHHHHHHHHhhhCCCCCCCCCceEEEEeecccccCCCCChhhhccceeeceecccCCCcHH
Q 047902 470 LGKLIILSVPGEFTTMAGRRLREAVKDTLINNGNGEFDNDTHIVIAGLTNAYSQYIATFEEYAHQRYEAASTLYGPHTLP 549 (720)
Q Consensus 470 iG~l~iv~vPgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~~~vvv~G~aNgy~gYitT~EeY~~q~YEg~sT~~Gp~tl~ 549 (720)
||+|+|++||||||||+|||||++|++++++.|+ ..+.+|+|+||+|.|++||+|+|||+.|||||+||+||||||.
T Consensus 487 iGql~I~aVPgEFTTMaGRRLR~avka~~~~~g~---~~~~~VVIaGLtN~YsqYi~T~EEYqvQRYE~ASTlyGpHtlS 563 (734)
T KOG2232|consen 487 IGQLVILAVPGEFTTMAGRRLRDAVKAALKSSGN---SINMHVVIAGLTNIYSQYITTFEEYQVQRYEGASTLYGPHTLS 563 (734)
T ss_pred eccEEEEecCccceehhhHHHHHHHHHHHHhcCC---CcceEEEEeccccchhhhcccHHHHhHHHhhccccccCcchhh
Confidence 9999999999999999999999999999988764 2478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCcccccccccCCCCCCCCCCCccccceeecccCCCCCccCCCCceEEEEEcccC
Q 047902 550 AYIQEFKKLAQAMAKGEKTTKGPSPPDLSSVQLSLSLNPTGDSPPAGKMFGDIKEDINQPKDGSFNKGDRPSATFWSANP 629 (720)
Q Consensus 550 a~~~~~~~L~~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~d~~p~g~~fGdv~~~~~~~~~~~y~~g~~v~~~F~~a~P 629 (720)
+|||+|++|+++|..+..+++||.|||+.++|+++++||++|..|.|..||||+.|+ |++..|++|+.|+|+|++|||
T Consensus 564 ~Yiq~FkkLakal~~~~t~~~GPqPPdl~dk~islltpv~~D~tP~g~~FGdV~s~v--p~k~~~r~g~~v~v~f~sanP 641 (734)
T KOG2232|consen 564 AYIQEFKKLAKALVRDETVDRGPQPPDLLDKQISLLTPVVVDGTPIGTDFGDVKSDV--PNKSYFRRGTQVKVTFRSANP 641 (734)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCchHhhhhhhccCceeeccCccCCccccccCCC--CCchhhccccEEEEEEeccCC
Confidence 999999999999999999999999999999999999999999999999999999997 466788999999999999999
Q ss_pred CCCCCCCCCeEEEEEecCC--ceEEEeeCCCcceEEEEE-ecCCCeeeEEEEEEEcCCCCCCcceEEEEeccccccCCCC
Q 047902 630 RYDLLTEGTYAVVEMLQGK--RWIPVYDDDDFSLYFKWS-LENTSFHGLATIEWEVPTKAIPGVYRLRHFGSSKKAVNST 706 (720)
Q Consensus 630 rn~l~~~~t~~~Ve~~~~~--~W~~v~~D~d~~t~~~w~-~~~~~~~s~~~i~W~ip~~~~~G~YRi~~~G~~k~~~~g~ 706 (720)
||||++|+||++|||+..+ .|++|+||+||+|||+|+ .+.+++.|++||+|+||+.+.||.|||||||.+|.++ |.
T Consensus 642 rNdl~Te~Tf~~VEr~~~~~~tW~~vydD~~~~~rf~W~r~~kl~~~S~atieW~Ipeta~pGvYRIrhfG~~k~il-g~ 720 (734)
T KOG2232|consen 642 RNDLMTEGTFATVERLEEGDKTWKPVYDDDDWELRFKWSRPNKLSGFSQATIEWRIPETASPGVYRIRHFGAAKKIL-GS 720 (734)
T ss_pred CcccccccceeeehhhhccCceeeeeecCccceeEEEeccCccccccccceEEEecCCcCCCceEEEEecccccccc-cc
Confidence 9999999999999998766 699999999999999999 6778999999999999999999999999999999999 99
Q ss_pred ceeeEEecceeEEC
Q 047902 707 NHYFTGASSAFTVS 720 (720)
Q Consensus 707 ~~~~~g~s~~F~v~ 720 (720)
|++|+|.|++|+|.
T Consensus 721 i~~f~Gss~aF~V~ 734 (734)
T KOG2232|consen 721 IHSFEGSSSAFVVV 734 (734)
T ss_pred ccccccCccceEeC
Confidence 99999999999984
No 2
>PTZ00487 ceramidase; Provisional
Probab=100.00 E-value=4.8e-189 Score=1605.93 Aligned_cols=667 Identities=45% Similarity=0.776 Sum_probs=632.7
Q ss_pred ceEEEEEEEeccCCCCccccccccCCCCccceeecceEEEEEEEEeCCCCCEEEEEEeccccccHHHHHHHHHHHHHHhC
Q 047902 2 QYLVGVGSYDMTGPAAGTNMMGYANLFQNTAGIHFRLRARTFIVAESSNGTRFAFVNLDAGMASQLVTTKVLEKLKTRFG 81 (720)
Q Consensus 2 ~~~vG~a~~DITgP~~~v~m~GYa~~~~~a~Gihd~L~ARA~vl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G 81 (720)
.|+||++++|||||+.++.||||+.+.|+++|||||||||||||++. +++|++||++|++|++++++++|+++|++++|
T Consensus 39 ~~~aG~gk~DITpP~~~v~m~GYa~~~q~a~GvhdrLyARAfVl~d~-~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G 117 (715)
T PTZ00487 39 SYQIGSGIYDITGPAAEVNMMGYAMPDQRTKGIHFRQRARAFVFADS-PGNRAVYVSTDSCMIFQEVKIGVVPKLQEIFG 117 (715)
T ss_pred ceEeEEEEEecCCCCccccccccccCCcCccceecceeEEEEEEEeC-CCCEEEEEEEcccCCCHHHHHHHHHHHHHHhC
Confidence 59999999999999899999999999999999999999999999763 38999999999999999999999999999999
Q ss_pred -CCCCCCcEEEEeeecCCCCCcCchhhhccccccccchHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEecCccccCCh
Q 047902 82 -NLYTEENIAISGIHTHAGPGGYLQYLIYSITSLGFVQQSFDAIVSAIVQSIVQAHNNLKPGSIFIRKGDVENAGINRSP 160 (720)
Q Consensus 82 -~~i~~~nViisaTHTHSgP~g~~~~~~~~~~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NRs~ 160 (720)
++|+.+||+|++|||||||++|.++.+|+++.+||+++|+++|+++|++||++||++|+|++|.++++++.++++|||+
T Consensus 118 i~~y~~~NVllsATHTHSGPgg~~~~~l~~~ts~Gf~~qy~~~lvdgIv~AI~~A~~nL~Pa~l~~g~g~~~~aniNRs~ 197 (715)
T PTZ00487 118 PDLYTLDNVLLSGTHTHSGPAGFSFYALYGITTLGFYKKNFDTICEGIVQAIVKAHKSVQPARMYTNSGELWNSNINRSP 197 (715)
T ss_pred cCcCChhhEEEEeeecCCCCcccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeeEEeccccccCCh
Confidence 6779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCHhhhhcCCCCCCCeeEEEEEEECCCCceEEEEEeeeecccccCCCCccccCChHhHHHHHHHHHhcCCCCCCc
Q 047902 161 SAYLLNPAEERARYPENVDKEMTLLKFVDAASGKSIGAFNWYATHGTSMSRDNLLISGDNKGAAARFFEDWFSSKNESSS 240 (720)
Q Consensus 161 ~ay~~NP~~er~~~~~~vD~~~~vL~f~~~~dG~~ia~L~~yA~HpTsl~~~n~lIS~D~~G~a~~~lE~~~~~~~~~~~ 240 (720)
.+|++||++||.+|++++|++|+||+|++. ||+++|+|+|||||||+|+++|++||+||||+++++||+.+++
T Consensus 198 ~ay~~NP~~er~~y~g~vD~~m~vLrf~~~-dGkpig~L~~fA~H~Tsl~~~N~lISgD~~G~Aa~~lEk~~~~------ 270 (715)
T PTZ00487 198 TAYDNNPEEEKAMYDGNVDKNMTVLRIEDM-NGNPFAAISFFAVHCTSMNNTNHLISGDNKGYASYLWEKYKNG------ 270 (715)
T ss_pred hhhhcCchhhccccCCCCCCceEEEEEEcC-CCCEEEEEEEEeecccccCCCCceecCchHHHHHHHHHHHhcc------
Confidence 999999999999999999999999999998 8999999999999999999999999999999999999998754
Q ss_pred chhcchhhhhhhhhhhccCCCccCcccccccccccCCCCceEEEEEcccccCCCcCCCCcccccCCCCCCCCCCCCCCCC
Q 047902 241 ITTNIGKLMEKSKTIKATGGQQCGKTTSQGFKVRKNDGSLFVGAFCQSNVGDVTPNVLGAFCIDSGKPCDFNHSSCHGDD 320 (720)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvsPn~~g~~~~d~g~~c~~~~s~c~~~~ 320 (720)
....+|.++|||+|+|||+||||||++|++|+| |+|||+++|||+|++
T Consensus 271 -------------------------------~~~~pg~~~FVAaF~qg~~GDvsPn~~g~~c~~-g~~c~~~~stc~g~~ 318 (715)
T PTZ00487 271 -------------------------------NDSFPGVGPFIAAFGQSNEGDVSPNTRGPTCRD-GIPCDYKTSTCNGTT 318 (715)
T ss_pred -------------------------------CccCCCCCceeEEEccCCcccCCCCCCCCcccc-CCcccccccccCCcc
Confidence 112233446999999999999999999999999 999999999999999
Q ss_pred ccccccCCCCc-chhhHHHHHHHHHHHHHHHHHhhccccccCCceeEEEEeeeeeeEeecCCC-CCccccccccccCccc
Q 047902 321 QLCIGRGPGYP-DEILSTKIIGERQFQKAVDLFNSATDQLSGKIDYRHVYINFTNIEVVLDGT-GNNTVKTCPAALGPGF 398 (720)
Q Consensus 321 ~~~~~~GP~~~-d~~~~~~~iG~~~~~~A~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~p~~-~~~~~~tc~~a~G~sf 398 (720)
++|+++||++. |+|+++++||+||+++|++||+++.++|+|+|+++|+|+||++++|..+.. +....+|||||||+||
T Consensus 319 ~~c~~~GP~~~~d~~~~t~~iG~rq~~~A~~l~~~~~~~l~G~v~~~h~~~dm~~~~v~~~~~~~~~~~~tC~aa~G~sf 398 (715)
T PTZ00487 319 EECWGLGPGKDGDMFESTQIIGGNQFNKALELFNNASIQVSGPIQYRHTWLNFTNVSVEPPYNSGVQVATTCRGAMGYSF 398 (715)
T ss_pred cceeccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCcccccccceEEEEEeccccEeccccCCCCCcceecccccCccc
Confidence 99999999987 799999999999999999999988889999999999999999999975532 3378899999999999
Q ss_pred cccccCCCCccccccCccc--chhhHHHhhhhhcCCchhhhhhcCCccEEecCCCCCCCCcCCCceeeEEEEEECCEEEE
Q 047902 399 AAGTTDGPGVFGFQQGDTE--INKLWKQLRDVLKKPSQYQEECQKPKAVLLSSGEMFEPYAWAPAVLPIQILRLGKLIIL 476 (720)
Q Consensus 399 aaGt~DG~g~~~f~qg~~~--~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~~~p~~~~vqilriG~l~iv 476 (720)
||||+||||.|+|+||++. +||||+.+++++..|++++++||+||||||++| +..||+|.|++|||||+|||+|+|+
T Consensus 399 aAGt~DGpg~f~f~qg~~~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpiLl~~G-~~~p~~w~p~iv~iQi~riG~l~i~ 477 (715)
T PTZ00487 399 AAGTTDGPGAFNFKQGDNSTKGNPFWNFIGSFIAKPTPEQILCQSPKPILLDVG-MVEPIPWVPDVMPIQIMTIGQIVLV 477 (715)
T ss_pred ccccCCCCCCccccCCCCCcCCCcHHHHHhhhccCCChHHhcccCCCceeecCC-CCCCCCCcCceeeeEEEEEeeEEEE
Confidence 9999999999999999865 589999999999999999999999999999999 6789999999999999999999999
Q ss_pred ecCCchhHHHHHHHHHHHHHHhhhCCCCCCCCCceEEEEeecccccCCCCChhhhccceeeceecccCCCcHHHHHHHHH
Q 047902 477 SVPGEFTTMAGRRLREAVKDTLINNGNGEFDNDTHIVIAGLTNAYSQYIATFEEYAHQRYEAASTLYGPHTLPAYIQEFK 556 (720)
Q Consensus 477 ~vPgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~~~vvv~G~aNgy~gYitT~EeY~~q~YEg~sT~~Gp~tl~a~~~~~~ 556 (720)
++|||+|||+|||||++|++++.. +. .+++|+|+||||+|+|||||+|||+.|||||+||+||||||+||+|++.
T Consensus 478 ~~P~E~TtmaGrRlr~aV~~~~~~-~~----~~~~Vvl~G~aN~Y~~YvtT~EEY~~QrYEGaSTlyGp~TL~ay~q~~~ 552 (715)
T PTZ00487 478 AVPGEFTTMSGRRLRNTVREIIGT-SI----ENPIVLIAGLSNTYSGYIATFEEFQVQRYEGASTVFGPHTLGAYQQEFD 552 (715)
T ss_pred ecCcccchhHHHHHHHHHHHHhhc-CC----CCceEEEEecccccccccCCHHHhhhhhhccccceeCchHHHHHHHHHH
Confidence 999999999999999999999865 21 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcccccccccCCCCCCCCCCCccccceeecccCCCCCc--cCCCCceEEEEEcccCCCCCC
Q 047902 557 KLAQAMAKGEKTTKGPSPPDLSSVQLSLSLNPTGDSPPAGKMFGDIKEDINQPKDGS--FNKGDRPSATFWSANPRYDLL 634 (720)
Q Consensus 557 ~L~~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~d~~p~g~~fGdv~~~~~~~~~~~--y~~g~~v~~~F~~a~Prn~l~ 634 (720)
+||++|..+.++++||.|||+++++++|+++|++|++|+|++||||+++| . .+ |++|++|+|+|++||||||||
T Consensus 553 ~la~al~~~~~~~~Gp~Pp~~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~---~-~~~~y~~g~~v~~~F~~a~Prn~l~ 628 (715)
T PTZ00487 553 KLAQSIVDGQPISPGLKPRNLYGHTWFFLPPVIVDSAPFFDDFGDLYQDV---D-TEKVYSNNDTVSAEFYGGNPRNNFM 628 (715)
T ss_pred HHHHHHhcCCCCCCCCCCCcccCCcccccCCcccCCCCCCCccCcEeccC---C-cccccCCCCEEEEEEEecCCCCccc
Confidence 99999999999999999999999999999999999999999999999998 3 35 999999999999999999999
Q ss_pred CCCCeEEEEEecCC-ceEEEeeCCCcceEEEEEecCCCeeeEEEEEEEcCCCCCCcceEEEEeccccc--cCCCCceeeE
Q 047902 635 TEGTYAVVEMLQGK-RWIPVYDDDDFSLYFKWSLENTSFHGLATIEWEVPTKAIPGVYRLRHFGSSKK--AVNSTNHYFT 711 (720)
Q Consensus 635 ~~~t~~~Ve~~~~~-~W~~v~~D~d~~t~~~w~~~~~~~~s~~~i~W~ip~~~~~G~YRi~~~G~~k~--~~~g~~~~~~ 711 (720)
+++||++|||++++ .|++|+||+||+|+|+|++. .++.|++||+|+||++++||+|||+|||+||+ +. |+|++|+
T Consensus 629 ~~~tf~~Ve~~~~~~~W~~v~~D~dw~t~~~W~r~-~~~~S~~ti~W~i~~~~~~G~YRi~~~G~~k~~~~~-g~i~~f~ 706 (715)
T PTZ00487 629 TESSFLTVDKLNEKNQWTTILVDGDWDTKWHWKMH-DLGFSLITIIWSIGPTTEPGTYRITHSGYAKKNPFS-QNLTPYQ 706 (715)
T ss_pred cCcceEEEEEecCCCceeEeccCCCcceEEEEecc-CCCceeEEEEEECCCCCCCeeeEEEEeecccccccC-CCceeeE
Confidence 99999999999776 79999999999999999964 46799999999999999999999999999998 67 9999999
Q ss_pred EecceeEEC
Q 047902 712 GASSAFTVS 720 (720)
Q Consensus 712 g~s~~F~v~ 720 (720)
|+|++|+|.
T Consensus 707 G~s~~F~v~ 715 (715)
T PTZ00487 707 GISSNFKVQ 715 (715)
T ss_pred EecCceEeC
Confidence 999999985
No 3
>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]. They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.
Probab=100.00 E-value=1.5e-189 Score=1623.56 Aligned_cols=669 Identities=55% Similarity=0.900 Sum_probs=471.7
Q ss_pred ceEEEEEEEeccCCCCccccccccCCCCccceeecceEEEEEEEEeCCCCCEEEEEEeccccccHHHHHHHHHHHHHHhC
Q 047902 2 QYLVGVGSYDMTGPAAGTNMMGYANLFQNTAGIHFRLRARTFIVAESSNGTRFAFVNLDAGMASQLVTTKVLEKLKTRFG 81 (720)
Q Consensus 2 ~~~vG~a~~DITgP~~~v~m~GYa~~~~~a~Gihd~L~ARA~vl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G 81 (720)
.|+||+|++|||||+.++.||||+.+.|+++|||||||||||||++.++++|+|||++|++++++.++++|+++|+++++
T Consensus 1 ~y~vG~g~~DITgP~~~v~m~GYa~~~q~a~GihdrLyARAfVl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~g 80 (674)
T PF04734_consen 1 NYLVGVGKADITGPPAGVPMMGYANRSQVATGIHDRLYARAFVLEDDDGGTRVVFVSLDLLMIPQEVRDEVRERLAAKYG 80 (674)
T ss_dssp -EEEEEEEEE----SEEEEEESS--SS-EEEEESS--EEEEEEEEESSS--EEEEEEESSS---HHHHHHHHHHHHHHST
T ss_pred CeeeeEeeeecCCCCCCcccCCCCCCCCCccceecceEEEEEEEEecCCCCEEEEEEeCccccCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999999999999999999999999999954358999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeeecCCCCCcCchhhhccccccccchHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEecCccccCChh
Q 047902 82 NLYTEENIAISGIHTHAGPGGYLQYLIYSITSLGFVQQSFDAIVSAIVQSIVQAHNNLKPGSIFIRKGDVENAGINRSPS 161 (720)
Q Consensus 82 ~~i~~~nViisaTHTHSgP~g~~~~~~~~~~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NRs~~ 161 (720)
.+|+++||+|++|||||||+||.++++++++..||+++|+++|+++|++||++|+++|+|++|.++++++.++++|||+.
T Consensus 81 ~~y~~~nViIsaTHTHSgPgg~~~~~~~~~~~~gf~~~~~~~lv~gIv~aI~~A~~~L~pa~l~~g~g~~~~a~~NRs~~ 160 (674)
T PF04734_consen 81 ILYDEENVIISATHTHSGPGGYSHYLLYNITSGGFDPEYYDALVDGIVEAIEQAHENLQPARLGFGTGELSDANINRSPS 160 (674)
T ss_dssp TT-SGGGEEEEE--BSBEE----SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHH
T ss_pred CCCChheEEEEeEecCCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeEEEecceeecCCch
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHhhhhcCCCCCCCeeEEEEEEECCCCceEEEEEeeeecccccCCCCccccCChHhHHHHHHHHHhcCCCCCCcc
Q 047902 162 AYLLNPAEERARYPENVDKEMTLLKFVDAASGKSIGAFNWYATHGTSMSRDNLLISGDNKGAAARFFEDWFSSKNESSSI 241 (720)
Q Consensus 162 ay~~NP~~er~~~~~~vD~~~~vL~f~~~~dG~~ia~L~~yA~HpTsl~~~n~lIS~D~~G~a~~~lE~~~~~~~~~~~~ 241 (720)
+|++||++||.+|++++||+|+||+|++. ||+++|+|+|||||||+|+++|++||+||||+++++||+.++.
T Consensus 161 ay~~NP~~er~~y~g~vD~~~~vLrf~~~-dG~~ig~L~nfAvHpTsl~~~N~lIS~D~~G~aa~~lE~~~~~------- 232 (674)
T PF04734_consen 161 AYLRNPAEERARYDGPVDPEMTVLRFRDA-DGKPIGVLNNFAVHPTSLGNTNRLISGDNKGYAAYLLEKELGG------- 232 (674)
T ss_dssp HHTT-T--T-TT-TTS---EEEEEEEEET-TS-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT---------
T ss_pred hhhcCccccccccCCCcCCceeEEEEEeC-CCCEEEEEEEEcccceeccCCCCeecCCcHhHHHHHHHHhhcc-------
Confidence 99999999999999999999999999997 8999999999999999999999999999999999999998752
Q ss_pred hhcchhhhhhhhhhhccCCCccCcccccccccccCCCCceEEEEEcccccCCCcCCCCcccccCCCCCCCCCCCCCCCCc
Q 047902 242 TTNIGKLMEKSKTIKATGGQQCGKTTSQGFKVRKNDGSLFVGAFCQSNVGDVTPNVLGAFCIDSGKPCDFNHSSCHGDDQ 321 (720)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qg~~GDvsPn~~g~~~~d~g~~c~~~~s~c~~~~~ 321 (720)
..+++++|||+|+|+|+||||||+.|+||+|||++|||++|||+|+.+
T Consensus 233 --------------------------------~~~~~~~fVaaFaq~n~GDvsPN~~g~~c~~~g~~c~~~~s~c~~~~~ 280 (674)
T PF04734_consen 233 --------------------------------DLAGKPPFVAAFAQGNAGDVSPNTLGPFCEDTGLPCDFEHSTCGGKNE 280 (674)
T ss_dssp ------------------------------------STT-EEEEE-SS-TTEES-SS-----------------------
T ss_pred --------------------------------cccCCCCeEEEEccCCcccccccccccccccccccccccccccccccc
Confidence 223468999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcchhhHHHHHHHHHHHHHHHHHhhccccccCCceeEEEEeeeeeeEeecCCC-CCccccccccccCccccc
Q 047902 322 LCIGRGPGYPDEILSTKIIGERQFQKAVDLFNSATDQLSGKIDYRHVYINFTNIEVVLDGT-GNNTVKTCPAALGPGFAA 400 (720)
Q Consensus 322 ~~~~~GP~~~d~~~~~~~iG~~~~~~A~~l~~~~~~~l~g~v~~~~~~vd~~~~~v~~p~~-~~~~~~tc~~a~G~sfaa 400 (720)
+|+++||+. |||++++|||+||+++|++||+++.++|+|+|+++|+||||++++|..+.. +.+..+||+||||+||||
T Consensus 281 ~~~~~Gp~~-d~~~s~~iig~rq~~~A~~l~~~~~~~~~g~v~~~~~~vdm~~~~v~~~~~~~~~~~~tc~~a~G~sfaA 359 (674)
T PF04734_consen 281 LCHGRGPGK-DMFESTRIIGERQFDKARELYDSASEELTGPVDSRHQYVDMSNVTVDPPFTGDGKTVRTCPAAMGYSFAA 359 (674)
T ss_dssp SSSTSSSTS--HHHHHHHHHHHHHHHHHHHHHHT-EEE-S-EEEEEEEEE-TT-EE-GGGT-TSS-EE-----EE----S
T ss_pred ccCCCCCCc-cchHHHHHHHHHHHHHHHHHhhccCcccCCCEeEEEEEEcCCCeEEccCCCCCCCcCccccccccccccc
Confidence 999999984 999999999999999999999988999999999999999999999997643 447899999999999999
Q ss_pred cccCCCCccccccCcc--cchhhHHHhhhhhcCCchhhhhhcCCccEEecCCCCCCCCcCCCceeeEEEEEECCEEEEec
Q 047902 401 GTTDGPGVFGFQQGDT--EINKLWKQLRDVLKKPSQYQEECQKPKAVLLSSGEMFEPYAWAPAVLPIQILRLGKLIILSV 478 (720)
Q Consensus 401 Gt~DG~g~~~f~qg~~--~~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~~~p~~~~vqilriG~l~iv~v 478 (720)
||+||||.|+|+||++ .+||||+.+++++.+|++++.+||+||||||++|+|++||+|+|++|||||+|||+|+|+++
T Consensus 360 Gt~DGpg~~~f~qg~~~~~~~p~w~~v~~~~~~p~~~~~~cq~pKpiLl~~G~~~~p~~w~p~i~~~Qi~riG~l~i~~~ 439 (674)
T PF04734_consen 360 GTEDGPGAFDFTQGDTEVEGNPFWDLVRDFLKKPSPEQVACQAPKPILLPTGEMNFPYPWVPNIVPIQIVRIGQLVIVAV 439 (674)
T ss_dssp SSSSSS-SS---SSS------HHHHHHT-SSS---HHHHHHTTT--EEE--TT--SSS-SS-SEEEEEEEEETTEEEEE-
T ss_pred ccccCCCcccccCCCcccccchHHHHHhhhccCCCHHHHhccCCCcEEEeccccCCCcccCCceEEEEEEEEcCEEEEEc
Confidence 9999999999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhCCCCCCCCCceEEEEeecccccCCCCChhhhccceeeceecccCCCcHHHHHHHHHHH
Q 047902 479 PGEFTTMAGRRLREAVKDTLINNGNGEFDNDTHIVIAGLTNAYSQYIATFEEYAHQRYEAASTLYGPHTLPAYIQEFKKL 558 (720)
Q Consensus 479 PgE~tt~~G~rlr~~v~~~~~~~~~~~~~~~~~vvv~G~aNgy~gYitT~EeY~~q~YEg~sT~~Gp~tl~a~~~~~~~L 558 (720)
|||+|||+|||||++|++++.+.+. .+++|+|+||+|+|+|||||+|||+.|+|||+||+||||||+||+|++.+|
T Consensus 440 P~E~TtmaGrRlr~~v~~~~~~~~~----~~~~vvi~g~sN~Y~~YvtT~EEY~~Q~YEg~sTl~Gp~tl~a~~q~~~~l 515 (674)
T PF04734_consen 440 PGEFTTMAGRRLREAVAEALGAAGI----DDPHVVIAGLSNGYSHYVTTPEEYQVQRYEGASTLYGPHTLAAYIQEFARL 515 (674)
T ss_dssp SSEE-HHHHHHHHHHHHHHHGGGT--------EEEEE-SBSS---EE--HHHHHH--HHHHT-TT-TTHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhhcCC----CceEEEEEeeccCcccccCCHHHhhcCcccccceeeCHhHHHHHHHHHHHH
Confidence 9999999999999999999988653 267999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCcccccccccCCCCCCCCCCCccccceeecccCCCCCccCCCCceEEEEEcccCCCCCCCCCC
Q 047902 559 AQAMAKGEKTTKGPSPPDLSSVQLSLSLNPTGDSPPAGKMFGDIKEDINQPKDGSFNKGDRPSATFWSANPRYDLLTEGT 638 (720)
Q Consensus 559 ~~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~d~~p~g~~fGdv~~~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~t 638 (720)
+++|.+++++++||+|+|+++++++++++|++|++|+|++||||+.|| . .+|++|++|+|+|++||||||||+++|
T Consensus 516 a~~l~~~~~~~~gp~p~~~~~~~~~~~~~v~~D~~p~g~~fGdv~~~~---~-~~y~~g~~v~~~F~~a~Prn~l~~~~t 591 (674)
T PF04734_consen 516 ARALADGEPVPPGPSPPDLSSKQISLPPGVVFDAPPLGKSFGDVLQQP---N-PSYRPGDTVSATFVGANPRNNLRLEGT 591 (674)
T ss_dssp HHHHHHT------------GGG--B-S--------STT--TT-EEE-------SEEETT-EEEEEEEE--GGG---TTS-
T ss_pred HHHHhhcccCCCCCCCcccccccccccccCCCCCCCCCCCcCceEeCC---c-CccCCCCeEEEEEeeeCCCCccCCCCC
Confidence 999999999999999999999999999999999999999999999998 3 589999999999999999999999999
Q ss_pred eEEEEEec-CCceEEEeeCCCcceEEEEE-ecCCCeeeEEEEEEEcCCCCCCcceEEEEeccccccCCCCceeeEEecce
Q 047902 639 YAVVEMLQ-GKRWIPVYDDDDFSLYFKWS-LENTSFHGLATIEWEVPTKAIPGVYRLRHFGSSKKAVNSTNHYFTGASSA 716 (720)
Q Consensus 639 ~~~Ve~~~-~~~W~~v~~D~d~~t~~~w~-~~~~~~~s~~~i~W~ip~~~~~G~YRi~~~G~~k~~~~g~~~~~~g~s~~ 716 (720)
||+|||++ ++.|++|+||+||+|+|+|+ .+..++.|++||+|+||++++||+|||+|||++|+++ |+|+||+|+|++
T Consensus 592 fl~Ver~~~~~~W~~v~~D~dw~t~f~W~r~~~~~~~S~~ti~W~ip~~~~~G~YRi~~~G~~k~~~-g~i~~f~G~S~~ 670 (674)
T PF04734_consen 592 FLTVERLESGGSWQTVADDADWSTRFRWKRTGSLLGTSEVTIEWEIPPDTPPGTYRIRHFGDAKSLF-GGITPFEGTSRE 670 (674)
T ss_dssp SEEEEEEES-S--EEEEETTSTTEEEEEEEETTT--EEEEEEEEE--TT--SEEEEEEEEEEEE-TT-T-EEEEEEE---
T ss_pred eEEEEEecCCCCeEEEEeCCCccEEEEEEecCCccccEEEEEEEECCCCCCCCCEEEEEEeeccCCC-CCeEeEEEECCc
Confidence 99999999 56999999999999999999 5555689999999999999999999999999999998 999999999999
Q ss_pred eEEC
Q 047902 717 FTVS 720 (720)
Q Consensus 717 F~v~ 720 (720)
|+|+
T Consensus 671 F~V~ 674 (674)
T PF04734_consen 671 FTVT 674 (674)
T ss_dssp EEE-
T ss_pred eEeC
Confidence 9995
No 4
>COG3356 Predicted membrane protein [Function unknown]
Probab=97.28 E-value=0.002 Score=73.56 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=91.1
Q ss_pred cccccCCC---CccceeecceEEEEEEEEeCCCCCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeecC
Q 047902 21 MMGYANLF---QNTAGIHFRLRARTFIVAESSNGTRFAFVNLDAGMASQLVTTKVLEKLKTRFGNLYTEENIAISGIHTH 97 (720)
Q Consensus 21 m~GYa~~~---~~a~Gihd~L~ARA~vl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViisaTHTH 97 (720)
++||+..+ +...|+ -+..+||++++.+ ++|.++|.+|.=-+..+++++|++++.+ + .+++.+..|-||
T Consensus 413 rvG~ar~~~~~~~~~Gl-g~~Gi~a~v~d~g--~~Rta~Vl~DsNNi~~~L~~~v~~~v~~-----l-v~~veV~TTDtH 483 (578)
T COG3356 413 RVGYARGKPLVDAEDGL-GPGGIRAAVVDTG--DTRTAYVLFDSNNITTELREEVRKAVRD-----L-VSEVEVVTTDTH 483 (578)
T ss_pred cceeeccCCCCCCCCCc-CcCceEEEEEecC--CeEEEEEEEeCCCCcHHHHHHHHHHHHh-----h-hcEEEEEecCCc
Confidence 57887532 233443 4689999999998 9999999999999999999999998887 3 579999999999
Q ss_pred CCCC-cCchhhhccccccccchHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEec
Q 047902 98 AGPG-GYLQYLIYSITSLGFVQQSFDAIVSAIVQSIVQAHNNLKPGSIFIRKGDVE 152 (720)
Q Consensus 98 SgP~-g~~~~~~~~~~~~g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~ 152 (720)
.-=+ ....| ...|.. .-.+.|.+.|+.++++|.++++|++.+..+.+++
T Consensus 484 ~vn~~~~~~~-----~pvg~r-~d~~~I~~~v~~~v~~A~~dle~ve~g~~~v~v~ 533 (578)
T COG3356 484 YVNGRLVLGY-----NPVGSR-EDLGEIADEVAKAVEEAEKDLEPVEVGVRTVKVK 533 (578)
T ss_pred eecccccccc-----cccccc-ccHHHHHHHHHHHHHHHHhccccceeEEEEEEEE
Confidence 8654 33221 122322 2356899999999999999999999998888774
No 5
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=97.06 E-value=0.0051 Score=61.66 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=80.9
Q ss_pred ceEEEEEEEEeCCCCCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeecCCCCCcCch--hhhcccccc
Q 047902 37 RLRARTFIVAESSNGTRFAFVNLDAGMASQLVTTKVLEKLKTRFGNLYTEENIAISGIHTHAGPGGYLQ--YLIYSITSL 114 (720)
Q Consensus 37 ~L~ARA~vl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViisaTHTHSgP~g~~~--~~~~~~~~~ 114 (720)
+.-.+|++++.+ ++|.++|.+|.--+.+.++++|++++.+. .+.+.|..|.||+--+-... |+.+.
T Consensus 60 ~~gi~~~~v~~~--g~~~~lv~~DsNNm~~~lr~~i~~~~~~~------~d~~ev~TTDtH~~~~~~~g~~y~~vG---- 127 (179)
T PF09843_consen 60 IGGISALVVEVG--GQRSALVLADSNNMEPGLREKIREALGDV------VDEVEVMTTDTHFVNGESGGNGYWPVG---- 127 (179)
T ss_pred ccccEEEEEEeC--CcEEEEEEEECCCCCHHHHHHHHHHHhhh------cceeEEecCcccEEccEECCccceecc----
Confidence 456789999987 99999999999999999999999888873 46899999999997642222 22221
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEec
Q 047902 115 GFVQQSFDAIVSAIVQSIVQAHNNLKPGSIFIRKGDVE 152 (720)
Q Consensus 115 g~~~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~ 152 (720)
... --+.+.+.+.+++.+|.++++|+++++.+..++
T Consensus 128 ~~~--~~~~i~~~~~~~~~~A~~~l~~v~~~~~~~~~~ 163 (179)
T PF09843_consen 128 PLI--PPREIIESRREAVSEAERDLEPVEVGYKEVYVK 163 (179)
T ss_pred ccC--CHHHHHHHHHHHHHHHHhcccccEEEEEEEEEE
Confidence 010 346788889999999999999999999998863
No 6
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=94.19 E-value=0.46 Score=42.34 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=41.4
Q ss_pred CccCCCCceEEEEEcccCCCCC-CCCCCeEEEEEecCCceEEEeeCCCcceEEEEEe-cCCCeeeEEEEEEEcCCCCCCc
Q 047902 612 GSFNKGDRPSATFWSANPRYDL-LTEGTYAVVEMLQGKRWIPVYDDDDFSLYFKWSL-ENTSFHGLATIEWEVPTKAIPG 689 (720)
Q Consensus 612 ~~y~~g~~v~~~F~~a~Prn~l-~~~~t~~~Ve~~~~~~W~~v~~D~d~~t~~~w~~-~~~~~~s~~~i~W~ip~~~~~G 689 (720)
..|+|||+|.+..+.-+..+++ ...+.-+.|+-.+. +=...++|.. . ......+..+|.+|.+++.|
T Consensus 9 ~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp----------~g~~v~~~~~~~-~~~~G~~~~~~~lp~~~~~G 77 (99)
T PF01835_consen 9 PIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDP----------SGNEVFRWSVNT-TNENGIFSGSFQLPDDAPLG 77 (99)
T ss_dssp SEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEET----------TSEEEEEEEEEE-TTCTTEEEEEEE--SS---E
T ss_pred cCcCCCCEEEEEEEEeccccccccccCCceEEEEECC----------CCCEEEEEEeee-eCCCCEEEEEEECCCCCCCE
Confidence 3899999999887743443321 12223333432222 2223345553 1 12455788899999999999
Q ss_pred ceEEEEecc
Q 047902 690 VYRLRHFGS 698 (720)
Q Consensus 690 ~YRi~~~G~ 698 (720)
+|+|+...+
T Consensus 78 ~y~i~~~~~ 86 (99)
T PF01835_consen 78 TYTIRVKTD 86 (99)
T ss_dssp EEEEEEEET
T ss_pred eEEEEEEEc
Confidence 999999885
No 7
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=52.24 E-value=36 Score=31.34 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=35.4
Q ss_pred CCEEEEEEeccccc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEeeec
Q 047902 51 GTRFAFVNLDAGMA-SQ----LVTTKVLEKLKTRFGNLYTEENIAISGIHT 96 (720)
Q Consensus 51 ~~rvv~Vs~Dl~~i-~~----~v~~~V~~~L~~~~G~~i~~~nViisaTHT 96 (720)
...+++|.+.+++. .. .+..+|.+.|++.+| +++++|+|.-+=.
T Consensus 55 ~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lg--i~~~rv~I~f~~~ 103 (116)
T PTZ00397 55 HDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLK--VKSERVYIEFKDC 103 (116)
T ss_pred CCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEEEC
Confidence 67999999997664 33 566788888899999 9999999987544
No 8
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=49.20 E-value=41 Score=29.69 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeecCCCCC
Q 047902 63 MASQLVTTKVLEKLKTRFGNLYTEENIAISGIHTHAGPG 101 (720)
Q Consensus 63 ~i~~~v~~~V~~~L~~~~G~~i~~~nViisaTHTHSgP~ 101 (720)
+-+..-+.+|+++|++.++ .+.++|+|-.-+||-|=+
T Consensus 9 g~~Tpsr~ei~~klA~~~~--~~~~~ivv~~~~t~fG~~ 45 (84)
T PF01282_consen 9 GKPTPSRKEIREKLAAMLN--VDPDLIVVFGIKTEFGGG 45 (84)
T ss_dssp SSSS--HHHHHHHHHHHHT--STGCCEEEEEEEESSSSS
T ss_pred CCCCCCHHHHHHHHHHHhC--CCCCeEEEeccEecCCCc
Confidence 3345668899999999999 899999999999999875
No 9
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=41.84 E-value=32 Score=29.30 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=13.6
Q ss_pred EEEEEE--EcCCCCCCcceEEEEe
Q 047902 675 LATIEW--EVPTKAIPGVYRLRHF 696 (720)
Q Consensus 675 ~~~i~W--~ip~~~~~G~YRi~~~ 696 (720)
.++++| ++|.++.+|.|+|...
T Consensus 51 s~~~~~~V~vp~~a~~G~y~v~~~ 74 (78)
T PF10633_consen 51 SVTVTFTVTVPADAAPGTYTVTVT 74 (78)
T ss_dssp EEEEEEEEEE-TT--SEEEEEEEE
T ss_pred EEEEEEEEECCCCCCCceEEEEEE
Confidence 345555 5699999999999753
No 10
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=40.91 E-value=79 Score=30.06 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=30.1
Q ss_pred EEEEeCCCCCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeecCC
Q 047902 43 FIVAESSNGTRFAFVNLDAGMASQLVTTKVLEKLKTRFGNLYTEENIAISGIHTHA 98 (720)
Q Consensus 43 ~vl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViisaTHTHS 98 (720)
+-|+.. ++--+++.-|+.+...++.. |.++|.+ ..|.|+|-|+|-
T Consensus 47 ~aF~~~--~~G~A~~~Gd~vll~~EV~p-vi~aL~~--------~GI~vtAlHNH~ 91 (123)
T PF07485_consen 47 IAFEPD--GDGKAMVMGDFVLLEDEVNP-VISALRK--------NGIEVTALHNHW 91 (123)
T ss_pred EEEEEC--CCCcEEEeecEEecHHHHHH-HHHHHHH--------CCceEEEEeccc
Confidence 344442 33357888999887666554 4445544 468999999997
No 11
>PRK10301 hypothetical protein; Provisional
Probab=38.21 E-value=1.8e+02 Score=27.42 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=5.5
Q ss_pred CceEEEE
Q 047902 618 DRPSATF 624 (720)
Q Consensus 618 ~~v~~~F 624 (720)
+.|+.+|
T Consensus 46 ~~V~L~F 52 (124)
T PRK10301 46 QALTLNF 52 (124)
T ss_pred CEEEEEc
Confidence 5688888
No 12
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=37.52 E-value=44 Score=29.33 Aligned_cols=46 Identities=15% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCEEEEEEecccccc-----HHHHHHHHHHHHHHhCCCCCCCcEEEEeeecCC
Q 047902 51 GTRFAFVNLDAGMAS-----QLVTTKVLEKLKTRFGNLYTEENIAISGIHTHA 98 (720)
Q Consensus 51 ~~rvv~Vs~Dl~~i~-----~~v~~~V~~~L~~~~G~~i~~~nViisaTHTHS 98 (720)
...+++|.+.+.... +.+...+.++|++++| |++++|+|+-+-++.
T Consensus 26 s~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~g--i~p~Dv~I~l~e~~~ 76 (82)
T PF14552_consen 26 SDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLG--IRPEDVMIVLVENPR 76 (82)
T ss_dssp -TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH-----GGGEEEEEEEE-G
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcC--CCHHHEEEEEEECCc
Confidence 567788888777322 4677788889999999 999999999988763
No 13
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=36.23 E-value=74 Score=30.55 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=27.4
Q ss_pred CCCcceEEEEEecCCCeeeEEEEEEEcCCCCCCcceEEEEe
Q 047902 656 DDDFSLYFKWSLENTSFHGLATIEWEVPTKAIPGVYRLRHF 696 (720)
Q Consensus 656 D~d~~t~~~w~~~~~~~~s~~~i~W~ip~~~~~G~YRi~~~ 696 (720)
...|.....|...+....-.+...-.||.++++|.|.|...
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~h~~i~IPa~a~~G~YH~~i~ 114 (132)
T PF15418_consen 74 EKPWVFEQDYDIYGGKKNYDFHEHIDIPADAPAGDYHFMIT 114 (132)
T ss_pred ccCcEEEEEEcccCCcccEeEEEeeeCCCCCCCcceEEEEE
Confidence 45677777887322223334444446899999999999885
No 14
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=36.22 E-value=30 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=18.4
Q ss_pred EEEcCCCCCCcceEEEEeccccccCCCC
Q 047902 679 EWEVPTKAIPGVYRLRHFGSSKKAVNST 706 (720)
Q Consensus 679 ~W~ip~~~~~G~YRi~~~G~~k~~~~g~ 706 (720)
.|-- +.||+|+|.+.-..+... |+
T Consensus 6 nW~F---T~PG~Y~l~~~a~~~~~~-G~ 29 (41)
T TIGR03769 6 NWVF---TKPGTYTLTVQATATLTD-GK 29 (41)
T ss_pred ceee---CCCeEEEEEEEEEEEeCC-Cc
Confidence 5655 679999999988876665 65
No 15
>PF01960 ArgJ: ArgJ family; InterPro: IPR002813 ArgJ is a bifunctional protein that catalyses the first 2.3.1.35 from EC and fifth steps 2.3.1.1 from EC in arginine biosynthesis []. The structure has been determined for glutamate N-acetyltransferase 2 (ornithine acetyltransferase; 2.3.1.35 from EC), an ArgJ-like protein from Streptomyces clavuligerus [].; GO: 0004358 glutamate N-acetyltransferase activity, 0006526 arginine biosynthetic process; PDB: 1VRA_A 1VZ7_A 1VZ8_D 2VZK_H 2V4I_A 2YEP_E 1VZ6_A 3IT4_A 3IT6_D.
Probab=34.39 E-value=1.2e+02 Score=34.37 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=35.4
Q ss_pred cceEEEEEEEEeCCCCCEEEEEEeccccccHHH--HHHHHHHHHHHhCCCCCCCcEEEEee
Q 047902 36 FRLRARTFIVAESSNGTRFAFVNLDAGMASQLV--TTKVLEKLKTRFGNLYTEENIAISGI 94 (720)
Q Consensus 36 d~L~ARA~vl~~~~~~~rvv~Vs~Dl~~i~~~v--~~~V~~~L~~~~G~~i~~~nViisaT 94 (720)
..=.+||+|+.++ +.-.|-..+.+ ..++.+.+++.+| +++++|++++|
T Consensus 52 ~~~~~ravvvNSG---------nANA~TG~~G~~da~~~~~~~A~~l~--~~~~~VlvaST 101 (388)
T PF01960_consen 52 KGGRIRAVVVNSG---------NANACTGEQGLEDAEAMAEAVAEALG--IPPEEVLVAST 101 (388)
T ss_dssp CCSBEEEEEEEES---------E---S-HHHHHHHHHHHHHHHHHHHT--CHGGGEEEEEE
T ss_pred cCCceEEEEEccC---------CCCCCCcHHHHHHHHHHHHHHHHHhC--CCcccEEEecc
Confidence 3446899999887 45556555544 4588899999999 99999999999
No 16
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=31.24 E-value=88 Score=26.99 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=46.6
Q ss_pred CccCCCCceEEEEEcccCCCCCCCCCCeEEEEEecCC-----ceEEEeeCCCcceEEEEEecCCCeeeEEEEEEEcCCCC
Q 047902 612 GSFNKGDRPSATFWSANPRYDLLTEGTYAVVEMLQGK-----RWIPVYDDDDFSLYFKWSLENTSFHGLATIEWEVPTKA 686 (720)
Q Consensus 612 ~~y~~g~~v~~~F~~a~Prn~l~~~~t~~~Ve~~~~~-----~W~~v~~D~d~~t~~~w~~~~~~~~s~~~i~W~ip~~~ 686 (720)
..+..|+.+++++-..+ ++ ..-+.|.-..++ .+..++++-+ .+.=.+.|.+|.+.
T Consensus 7 ~~~~~g~~~~I~W~~~~--~~----~~~~~I~L~~g~~~~~~~~~~ia~~v~--------------~~~gs~~~~~p~~l 66 (93)
T PF10342_consen 7 TVWTAGQPITITWTSDG--TD----PGNVTIYLCNGNNTNLNFVQTIASNVS--------------NSDGSYTWTIPSDL 66 (93)
T ss_pred CEEECCCcEEEEEeCCC--CC----CcEEEEEEEcCCCCCcceeEEEEeccc--------------CCCCEEEEEcCCCC
Confidence 46778888998887653 11 134456544333 2333332221 22234689998876
Q ss_pred CC-cceEEEEeccccccCCCCceeeEEecceeEE
Q 047902 687 IP-GVYRLRHFGSSKKAVNSTNHYFTGASSAFTV 719 (720)
Q Consensus 687 ~~-G~YRi~~~G~~k~~~~g~~~~~~g~s~~F~v 719 (720)
++ +.|+|+.. +... . ..-..|..|+|
T Consensus 67 ~~~~~Y~i~~~-~~~~----~--~~~~~S~~FtI 93 (93)
T PF10342_consen 67 PSGGDYFIQIV-NSSN----N--TIYAYSPRFTI 93 (93)
T ss_pred CCCCcEEEEEE-ECCC----C--ceEEECccEEC
Confidence 65 89999998 4321 1 23556777775
No 17
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=26.84 E-value=4.3e+02 Score=23.50 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred cceeecccCCCCCccCCCCceEEEEEcccCCCCCCCCCCeEEEEEecCC----ceEEEeeCCCcceEEEEEecCCCeeeE
Q 047902 600 GDIKEDINQPKDGSFNKGDRPSATFWSANPRYDLLTEGTYAVVEMLQGK----RWIPVYDDDDFSLYFKWSLENTSFHGL 675 (720)
Q Consensus 600 Gdv~~~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~t~~~Ve~~~~~----~W~~v~~D~d~~t~~~w~~~~~~~~s~ 675 (720)
|.+|..+ | +.|+.+| .-.++...+-+.|-..+|. ....+.. ....+.......+....
T Consensus 12 ga~l~~~--P--------~~v~L~F-----~e~v~~~~s~v~v~~~~g~~v~~~~~~~~~---~~~~~~~~l~~~l~~G~ 73 (97)
T PF04234_consen 12 GATLAAA--P--------EEVTLTF-----SEPVEPGFSSVTVTDPDGKRVDLGEPTVDG---DGKTLTVPLPPPLPPGT 73 (97)
T ss_dssp TBEE-S------------SSEEEEE-----SS---CCC-EEEEEEEEETTSCTCEEEEEE---STTEEEEEESS---SEE
T ss_pred CCEeecC--C--------CEEEEEe-----CCCCccCccEEEEEcCCCceeecCcceecC---CceEEEEECCCCCCCce
Q ss_pred EEEEEEc---CCCCCCcceEEEE
Q 047902 676 ATIEWEV---PTKAIPGVYRLRH 695 (720)
Q Consensus 676 ~~i~W~i---p~~~~~G~YRi~~ 695 (720)
++|.|++ ......|.|+|..
T Consensus 74 YtV~wrvvs~DGH~~~G~~~F~V 96 (97)
T PF04234_consen 74 YTVSWRVVSADGHPVSGSFSFTV 96 (97)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEE
T ss_pred EEEEEEEEecCCCCcCCEEEEEE
No 18
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=26.71 E-value=2.8e+02 Score=34.36 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=61.0
Q ss_pred CCEEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeecCCCCCcCchhhhcc-ccccccchHHHHHHHHHHH
Q 047902 51 GTRFAFVNLDAGMASQLVTTKVLEKLKTRFGNLYTEENIAISGIHTHAGPGGYLQYLIYS-ITSLGFVQQSFDAIVSAIV 129 (720)
Q Consensus 51 ~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViisaTHTHSgP~g~~~~~~~~-~~~~g~~~~y~~~lv~~iv 129 (720)
++-.+-|.+-..-+.+.....+.+.+++.+| ++.++|-|...-|...|-+...+---. ...+.....--+.|.+++.
T Consensus 476 Gsv~v~v~~g~~d~GQG~~T~~aQiaAe~LG--ip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~kl~ 553 (768)
T TIGR03196 476 GTVKIRAHFACAECGQGFLAAAEQIAMEELG--CAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAIQGACAAFAAQLK 553 (768)
T ss_pred CCeEEEEEECCCCcCCCHHHHHHHHHHHHhC--CCHHHEEEecCCCCCCCCCCCCchhhhhHhHHHHHHHHHHHHHHHHH
Confidence 5435666677777778888888889999999 999999999999988884332111000 0112245555566777776
Q ss_pred HHHHHHHhcCCcEEEEEEEEEe
Q 047902 130 QSIVQAHNNLKPGSIFIRKGDV 151 (720)
Q Consensus 130 ~AI~~A~~~l~Pa~l~~g~g~~ 151 (720)
+...+.+ ...|..+.+..+.+
T Consensus 554 ~~aa~~l-~~~~~~~~~~~g~~ 574 (768)
T TIGR03196 554 ARAAETA-GLPAEVVEAPAENL 574 (768)
T ss_pred HHHHHHh-CCChhhEEEeCCee
Confidence 5543322 34444455544433
No 19
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=25.66 E-value=1.6e+02 Score=27.46 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=37.6
Q ss_pred EEEEeCCCCCEEEEEEeccccc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEeee
Q 047902 43 FIVAESSNGTRFAFVNLDAGMA-SQ----LVTTKVLEKLKTRFGNLYTEENIAISGIH 95 (720)
Q Consensus 43 ~vl~~~~~~~rvv~Vs~Dl~~i-~~----~v~~~V~~~L~~~~G~~i~~~nViisaTH 95 (720)
+.+.. +..+.+||.+-.++. .. .+...+-+.|++++| |+.++|.|.-.-
T Consensus 49 m~fgG--s~~P~A~~~l~siG~~~~~~n~~~s~~i~~~l~~~Lg--Ip~dRiYI~f~d 102 (113)
T PTZ00450 49 MSFQG--STAPAAYVRVEAWGEYAPSKPKMMTPRITAAITKECG--IPAERIYVFYYS 102 (113)
T ss_pred EEEcC--CCCCEEEEEEEEecCcCHHHHHHHHHHHHHHHHHHcC--CCcccEEEEEEc
Confidence 44543 366999999988774 43 456677788899999 999999998774
No 20
>COG1470 Predicted membrane protein [Function unknown]
Probab=25.53 E-value=92 Score=35.95 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=30.9
Q ss_pred CcceEEEEEe-cCC--CeeeEEEEEEEcCCCCCCcceEEEEecccc
Q 047902 658 DFSLYFKWSL-ENT--SFHGLATIEWEVPTKAIPGVYRLRHFGSSK 700 (720)
Q Consensus 658 d~~t~~~w~~-~~~--~~~s~~~i~W~ip~~~~~G~YRi~~~G~~k 700 (720)
+|++++.=.+ ..+ -..-.+.++=++|+++.+|.|||...+.+-
T Consensus 425 gWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 425 GWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred cceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 4666665441 111 135578888899999999999999988775
No 21
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=23.82 E-value=1.4e+02 Score=28.30 Aligned_cols=18 Identities=44% Similarity=0.837 Sum_probs=13.7
Q ss_pred EEEcCCC-CCCcceEEEEe
Q 047902 679 EWEVPTK-AIPGVYRLRHF 696 (720)
Q Consensus 679 ~W~ip~~-~~~G~YRi~~~ 696 (720)
.|-.+.. ..||+|||++-
T Consensus 67 ~~~~~~~tl~~GtYr~~~d 85 (132)
T KOG3006|consen 67 DWVSPDFTLIPGTYRLVFD 85 (132)
T ss_pred ecccchhhhccceEEEEEe
Confidence 4776654 46899999994
No 22
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=23.81 E-value=1.2e+02 Score=28.41 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=9.2
Q ss_pred CCCCcceEEEEe
Q 047902 685 KAIPGVYRLRHF 696 (720)
Q Consensus 685 ~~~~G~YRi~~~ 696 (720)
..++|+|||++.
T Consensus 54 ~~~~G~Y~l~F~ 65 (112)
T TIGR02962 54 TLAAGIYKLRFD 65 (112)
T ss_pred cCCCeeEEEEEE
Confidence 457899999973
No 23
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.44 E-value=38 Score=30.68 Aligned_cols=26 Identities=46% Similarity=0.747 Sum_probs=20.5
Q ss_pred EcccccCCCcCCCCcccccCCCCCCCCCCCCCCCCccccccCCCC
Q 047902 286 CQSNVGDVTPNVLGAFCIDSGKPCDFNHSSCHGDDQLCIGRGPGY 330 (720)
Q Consensus 286 ~qg~~GDvsPn~~g~~~~d~g~~c~~~~s~c~~~~~~~~~~GP~~ 330 (720)
++||.||+.|--. |-.|+.+-.||+|
T Consensus 36 ~~GN~GD~kpvge-------------------GV~ELRId~GpGy 61 (100)
T COG3657 36 ALGNFGDVKPVGE-------------------GVSELRIDHGPGY 61 (100)
T ss_pred hcCCCcCcccccc-------------------chhhheeccCCce
Confidence 6899999998432 4567888899987
No 24
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.99 E-value=1.8e+02 Score=26.67 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=37.1
Q ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeecCCCCC
Q 047902 53 RFAFVNLDAGMASQLVTTKVLEKLKTRFGNLYTEENIAISGIHTHAGPG 101 (720)
Q Consensus 53 rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nViisaTHTHSgP~ 101 (720)
+=+.+.+-.-+-...-+.+|+++|++.++ .+.+.|+|-.-.||-|-+
T Consensus 17 ke~~~~v~h~g~~tpsr~eirekLa~~~~--~~~~~vvv~~~~t~fG~g 63 (99)
T PRK01178 17 REIKFEVYHEGSATPSRKDVRKKLAAMLN--ADKELVVVRKIKTEYGMG 63 (99)
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHC--cCCCEEEEEccCccCCCc
Confidence 33444444445445668899999999999 899999999999999975
No 25
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=21.46 E-value=1.9e+02 Score=28.46 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=30.5
Q ss_pred EEEEEEEEeCCCCCEEEEEEeccc---cccHHHHHHHHHHHHHHhCCCCCC-CcEEEEe
Q 047902 39 RARTFIVAESSNGTRFAFVNLDAG---MASQLVTTKVLEKLKTRFGNLYTE-ENIAISG 93 (720)
Q Consensus 39 ~ARA~vl~~~~~~~rvv~Vs~Dl~---~i~~~v~~~V~~~L~~~~G~~i~~-~nViisa 93 (720)
-|+++|.++ -|+|.+++- .....+.++|.++|++. .+. .+|.||+
T Consensus 92 ~A~vvv~~~------~a~Vav~~~~~~~~~~~i~~~V~~~v~~~----~p~~~~V~Vs~ 140 (177)
T PF09580_consen 92 DATVVVTDD------NAYVAVDLDFNRFNTKKIKKKVEKAVKSA----DPRIYNVYVST 140 (177)
T ss_pred EEEEEEECC------EEEEEEEecccccchhHHHHHHHHHHHHh----CCCccEEEEEc
Confidence 567777654 377777666 55567777777777764 345 7998885
No 26
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=20.64 E-value=1.4e+02 Score=28.94 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=8.8
Q ss_pred CCCcceEEEEe
Q 047902 686 AIPGVYRLRHF 696 (720)
Q Consensus 686 ~~~G~YRi~~~ 696 (720)
.++|+|||++.
T Consensus 80 ~~~G~Y~L~F~ 90 (137)
T PRK15036 80 ATTGDYRVVFK 90 (137)
T ss_pred CCCeeEEEEEE
Confidence 46899999884
No 27
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=20.15 E-value=3.7e+02 Score=25.06 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=38.7
Q ss_pred CCCceEEEEEcccCCCCCCCCCCeEEEEEecCCceEEEeeCCCcceEEEEEecCCCeeeEEEEEEEcCCCCCCcceEEEE
Q 047902 616 KGDRPSATFWSANPRYDLLTEGTYAVVEMLQGKRWIPVYDDDDFSLYFKWSLENTSFHGLATIEWEVPTKAIPGVYRLRH 695 (720)
Q Consensus 616 ~g~~v~~~F~~a~Prn~l~~~~t~~~Ve~~~~~~W~~v~~D~d~~t~~~w~~~~~~~~s~~~i~W~ip~~~~~G~YRi~~ 695 (720)
..|.++.+|.-| |+-.. ..+|.+.+.--. -.++..|+-++.=.. ...++|.=.+|.+++=|.|++.-
T Consensus 48 ~~d~l~l~~~~G-~~P~~-~~gT~~~~~~~~------~~~~~~W~a~v~~~~-----~~~~tv~V~spa~A~VG~y~l~v 114 (118)
T PF00868_consen 48 SKDQLSLEFETG-PNPSE-SKGTKVVFPVSS------SLDSSSWSARVESQD-----GNSVTVSVTSPANAPVGRYKLSV 114 (118)
T ss_dssp TTEEEEEEEEES-SS--T-TTTSEEEEEECS------SS-TSSSEEEEEEEE-----TTEEEEEEE--TTS--EEEEEEE
T ss_pred CCcEEEEEEEEe-ccccc-CCCcEEEEEEcc------CCCCCCEEEEEEecC-----CCEEEEEEECCCCCceEEEEEEE
Confidence 357888888766 43333 456887775411 124556655554442 22488898999999999999864
Done!