Query 047903
Match_columns 430
No_of_seqs 301 out of 3095
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-42 2.6E-47 358.5 18.8 385 2-404 395-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.8E-33 1.7E-37 299.7 21.8 360 3-405 421-904 (1153)
3 KOG0444 Cytoskeletal regulator 99.9 1.3E-24 2.7E-29 206.6 -2.7 248 146-405 107-373 (1255)
4 PLN00113 leucine-rich repeat r 99.9 8.7E-22 1.9E-26 213.0 15.1 269 117-405 92-391 (968)
5 PLN00113 leucine-rich repeat r 99.9 4.8E-22 1E-26 215.0 12.9 282 116-405 116-439 (968)
6 KOG4194 Membrane glycoprotein 99.8 2.2E-21 4.8E-26 183.4 1.8 170 117-293 124-302 (873)
7 KOG4194 Membrane glycoprotein 99.8 2.8E-21 6E-26 182.7 -1.2 287 103-409 159-460 (873)
8 KOG0444 Cytoskeletal regulator 99.8 1.2E-20 2.7E-25 179.7 -6.3 263 118-404 55-326 (1255)
9 PLN03210 Resistant to P. syrin 99.7 1.2E-17 2.6E-22 181.9 14.4 271 118-405 532-836 (1153)
10 KOG0472 Leucine-rich repeat pr 99.7 6.9E-20 1.5E-24 166.2 -5.5 139 146-293 164-306 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 1.9E-20 4.1E-25 169.9 -9.8 257 120-405 47-308 (565)
12 PRK15387 E3 ubiquitin-protein 99.6 1.5E-15 3.4E-20 154.8 11.7 241 121-405 204-456 (788)
13 PRK15370 E3 ubiquitin-protein 99.6 1.5E-15 3.3E-20 155.7 7.7 243 119-405 179-426 (754)
14 KOG0617 Ras suppressor protein 99.6 2.2E-17 4.8E-22 133.5 -4.5 167 139-323 32-201 (264)
15 KOG0618 Serine/threonine phosp 99.5 2.9E-16 6.2E-21 156.4 -6.6 107 118-229 219-326 (1081)
16 PRK15370 E3 ubiquitin-protein 99.5 2.1E-14 4.6E-19 147.3 6.6 225 116-381 197-426 (754)
17 KOG0617 Ras suppressor protein 99.5 2.3E-16 5E-21 127.6 -6.1 147 116-269 31-184 (264)
18 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.6E-20 138.7 -3.2 259 131-405 58-357 (498)
19 PRK15387 E3 ubiquitin-protein 99.5 5.2E-14 1.1E-18 143.8 8.0 227 117-385 221-460 (788)
20 KOG0618 Serine/threonine phosp 99.5 9.1E-16 2E-20 152.9 -5.1 240 116-382 239-488 (1081)
21 KOG4658 Apoptotic ATPase [Sign 99.3 6.5E-12 1.4E-16 131.2 11.4 187 134-326 516-731 (889)
22 KOG4237 Extracellular matrix p 99.3 4.8E-13 1E-17 121.9 -0.1 110 116-229 65-180 (498)
23 cd00116 LRR_RI Leucine-rich re 99.2 1.2E-12 2.7E-17 123.7 -1.3 140 254-405 132-289 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 2.8E-12 6E-17 121.3 -2.2 252 139-405 22-318 (319)
25 KOG0532 Leucine-rich repeat (L 99.1 3E-12 6.4E-17 121.9 -3.3 170 122-328 79-250 (722)
26 PF14580 LRR_9: Leucine-rich r 99.1 7E-11 1.5E-15 99.7 4.4 105 139-269 18-124 (175)
27 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3E-16 114.0 -0.9 212 156-380 112-336 (505)
28 PF14580 LRR_9: Leucine-rich r 99.0 3.5E-10 7.6E-15 95.4 5.2 124 117-245 18-152 (175)
29 PF13855 LRR_8: Leucine rich r 98.9 6.5E-10 1.4E-14 77.1 3.0 60 165-224 1-61 (61)
30 COG4886 Leucine-rich repeat (L 98.9 2.4E-09 5.2E-14 104.4 5.3 173 139-326 115-291 (394)
31 PF13855 LRR_8: Leucine rich r 98.8 5.4E-09 1.2E-13 72.5 3.8 60 140-201 1-61 (61)
32 COG4886 Leucine-rich repeat (L 98.7 9.3E-09 2E-13 100.2 4.9 165 118-293 116-286 (394)
33 KOG0532 Leucine-rich repeat (L 98.7 8.1E-10 1.8E-14 105.6 -4.1 211 146-381 54-271 (722)
34 KOG1259 Nischarin, modulator o 98.7 3.7E-09 7.9E-14 93.7 0.1 120 146-269 288-410 (490)
35 PLN03150 hypothetical protein; 98.6 8.7E-08 1.9E-12 98.2 7.6 83 146-229 422-507 (623)
36 KOG3207 Beta-tubulin folding c 98.6 1.4E-08 3.1E-13 94.4 1.4 149 116-269 119-282 (505)
37 KOG1259 Nischarin, modulator o 98.6 8E-09 1.7E-13 91.6 -0.4 122 117-245 283-411 (490)
38 KOG4341 F-box protein containi 98.4 1.4E-08 3E-13 93.9 -2.5 262 139-415 163-447 (483)
39 KOG2120 SCF ubiquitin ligase, 98.4 1.5E-08 3.1E-13 89.9 -2.9 103 166-269 186-297 (419)
40 KOG2120 SCF ubiquitin ligase, 98.4 3E-08 6.4E-13 87.9 -1.9 182 190-405 186-374 (419)
41 PF12799 LRR_4: Leucine Rich r 98.4 3.8E-07 8.3E-12 58.0 3.5 41 165-206 1-41 (44)
42 KOG1909 Ran GTPase-activating 98.3 2E-07 4.4E-12 84.5 2.4 86 139-226 29-134 (382)
43 PLN03150 hypothetical protein; 98.3 1.3E-06 2.9E-11 89.6 8.0 103 120-226 420-529 (623)
44 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3.1E-11 55.4 3.1 38 189-226 1-38 (44)
45 KOG1909 Ran GTPase-activating 98.1 1.1E-06 2.4E-11 79.9 2.6 92 253-355 208-307 (382)
46 KOG2982 Uncharacterized conser 98.1 1.1E-06 2.4E-11 78.2 1.4 82 309-401 197-286 (418)
47 KOG4579 Leucine-rich repeat (L 98.0 1.6E-06 3.4E-11 68.4 0.5 82 146-229 57-139 (177)
48 KOG0531 Protein phosphatase 1, 98.0 5.5E-07 1.2E-11 88.2 -2.6 233 146-405 76-316 (414)
49 PRK15386 type III secretion pr 97.9 1.1E-05 2.5E-10 76.6 5.4 156 139-322 51-210 (426)
50 KOG3665 ZYG-1-like serine/thre 97.9 1.2E-05 2.6E-10 82.7 5.1 83 209-293 170-259 (699)
51 KOG0531 Protein phosphatase 1, 97.8 3.7E-06 7.9E-11 82.4 -0.9 104 117-226 94-200 (414)
52 KOG1859 Leucine-rich repeat pr 97.8 5.5E-07 1.2E-11 89.0 -7.1 97 167-269 166-265 (1096)
53 KOG2982 Uncharacterized conser 97.7 6.7E-06 1.4E-10 73.3 0.2 203 139-353 70-286 (418)
54 KOG1859 Leucine-rich repeat pr 97.7 9.9E-07 2.2E-11 87.3 -5.9 121 116-243 162-289 (1096)
55 KOG4579 Leucine-rich repeat (L 97.7 9E-06 1.9E-10 64.2 0.1 87 118-208 53-142 (177)
56 KOG1644 U2-associated snRNP A' 97.7 5.3E-05 1.1E-09 64.0 4.2 104 146-269 46-151 (233)
57 KOG4341 F-box protein containi 97.6 6.5E-06 1.4E-10 76.7 -2.4 251 141-405 139-412 (483)
58 COG5238 RNA1 Ran GTPase-activa 97.5 5.1E-05 1.1E-09 67.0 1.7 233 139-381 29-314 (388)
59 KOG3665 ZYG-1-like serine/thre 97.4 9.4E-05 2E-09 76.2 3.3 104 118-226 122-234 (699)
60 PRK15386 type III secretion pr 97.3 0.00061 1.3E-08 65.1 7.0 78 118-208 52-134 (426)
61 KOG1644 U2-associated snRNP A' 97.2 0.00049 1.1E-08 58.3 4.4 106 165-293 42-149 (233)
62 KOG2123 Uncharacterized conser 97.1 8.8E-05 1.9E-09 65.7 -0.8 100 164-268 18-127 (388)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00052 1.1E-08 60.5 2.0 59 165-225 43-104 (260)
64 KOG1947 Leucine rich repeat pr 96.9 0.00026 5.7E-09 70.8 0.1 130 163-293 186-330 (482)
65 KOG2123 Uncharacterized conser 96.8 0.00018 4E-09 63.8 -1.6 96 146-244 23-128 (388)
66 KOG1947 Leucine rich repeat pr 96.6 0.0005 1.1E-08 68.8 -0.3 107 186-293 185-304 (482)
67 KOG2739 Leucine-rich acidic nu 96.5 0.002 4.3E-08 56.9 2.9 79 146-226 47-130 (260)
68 PF00560 LRR_1: Leucine Rich R 96.4 0.0014 3E-08 34.7 0.8 17 191-207 2-18 (22)
69 PF00560 LRR_1: Leucine Rich R 96.1 0.0015 3.2E-08 34.5 0.2 21 166-187 1-21 (22)
70 COG5238 RNA1 Ran GTPase-activa 95.8 0.021 4.5E-07 51.0 5.6 40 254-293 210-251 (388)
71 KOG0473 Leucine-rich repeat pr 95.4 0.00062 1.3E-08 58.9 -4.8 85 139-226 41-125 (326)
72 PF13504 LRR_7: Leucine rich r 95.2 0.012 2.6E-07 28.8 1.4 15 190-204 2-16 (17)
73 PF13306 LRR_5: Leucine rich r 95.1 0.037 8.1E-07 44.2 4.8 65 154-220 23-89 (129)
74 PF13306 LRR_5: Leucine rich r 95.0 0.083 1.8E-06 42.1 6.5 104 110-221 4-112 (129)
75 smart00369 LRR_TYP Leucine-ric 94.8 0.023 4.9E-07 31.3 2.0 20 165-184 2-21 (26)
76 smart00370 LRR Leucine-rich re 94.8 0.023 4.9E-07 31.3 2.0 20 165-184 2-21 (26)
77 PF13504 LRR_7: Leucine rich r 94.7 0.017 3.7E-07 28.2 1.1 17 165-181 1-17 (17)
78 KOG0473 Leucine-rich repeat pr 93.7 0.0031 6.8E-08 54.7 -4.7 76 154-231 30-106 (326)
79 KOG3864 Uncharacterized conser 93.0 0.0077 1.7E-07 51.2 -3.3 83 313-405 102-187 (221)
80 smart00370 LRR Leucine-rich re 93.0 0.096 2.1E-06 28.7 2.2 21 188-208 1-21 (26)
81 smart00369 LRR_TYP Leucine-ric 93.0 0.096 2.1E-06 28.7 2.2 21 188-208 1-21 (26)
82 KOG3864 Uncharacterized conser 91.0 0.18 3.9E-06 43.1 2.6 75 146-220 105-184 (221)
83 smart00364 LRR_BAC Leucine-ric 80.0 1.1 2.3E-05 24.6 1.1 17 166-182 3-19 (26)
84 smart00365 LRR_SD22 Leucine-ri 78.1 1.8 3.9E-05 23.8 1.6 15 189-203 2-16 (26)
85 PF13516 LRR_6: Leucine Rich r 75.1 1.8 3.8E-05 23.0 1.1 14 189-202 2-15 (24)
86 smart00367 LRR_CC Leucine-rich 74.0 1.4 3.1E-05 24.0 0.6 15 370-384 2-16 (26)
87 smart00368 LRR_RI Leucine rich 52.0 11 0.00023 21.0 1.4 13 166-178 3-15 (28)
88 KOG3763 mRNA export factor TAP 47.3 14 0.0003 36.9 2.3 81 163-244 216-312 (585)
89 TIGR00864 PCC polycystin catio 37.1 25 0.00054 42.2 2.7 28 149-176 2-30 (2740)
90 PF14162 YozD: YozD-like prote 28.9 97 0.0021 20.0 3.2 30 44-73 21-52 (57)
91 COG3432 Predicted transcriptio 27.6 2.3E+02 0.005 21.3 5.5 39 53-94 43-81 (95)
92 PF12802 MarR_2: MarR family; 27.0 1.4E+02 0.0029 19.7 4.1 59 14-80 2-60 (62)
93 PF13463 HTH_27: Winged helix 25.7 1.4E+02 0.0031 20.1 4.1 31 58-88 35-65 (68)
94 PRK04841 transcriptional regul 23.2 2E+02 0.0042 31.4 6.6 73 12-99 260-332 (903)
95 PF13730 HTH_36: Helix-turn-he 22.9 2.2E+02 0.0047 18.3 4.9 51 14-71 2-55 (55)
96 PF15385 SARG: Specifically an 21.8 43 0.00094 33.4 1.0 16 11-26 7-22 (497)
97 PF09150 Carot_N: Orange carot 21.7 1.8E+02 0.0039 24.0 4.3 44 8-65 88-136 (159)
98 KOG3763 mRNA export factor TAP 21.2 1.1E+02 0.0024 30.8 3.7 37 186-222 215-254 (585)
99 PF05725 FNIP: FNIP Repeat; I 20.9 1.4E+02 0.003 18.4 2.9 10 310-319 10-19 (44)
100 cd04443 DEP_GPR155 DEP (Dishev 20.4 2.6E+02 0.0056 20.3 4.6 39 36-76 32-70 (83)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-42 Score=358.45 Aligned_cols=385 Identities=28% Similarity=0.327 Sum_probs=280.2
Q ss_pred chhhhHHHHhhcCChhhhHHHHhhhcccCCCceechhHHHHHHHhcCCCCC-----ChHHHHHHHHHHHHHCCceeeeec
Q 047903 2 EKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPD-----NSEATAEKDLELLINRGFVDTRKR 76 (430)
Q Consensus 2 ~~i~~~l~~sY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~-----~~~~~~~~~~~~L~~~~ll~~~~~ 76 (430)
+.|+++|++|||+||+++|.||+|||+|||||+|++++|+.+|||+|||.+ .++|.|..|+.+|++++|+...+.
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 478999999999999999999999999999999999999999999999976 899999999999999999998775
Q ss_pred CCCCcEeEEEEChhHHHHHHHHhh-----hcCcEeeecCC-----CCCCCCCCeeEEEEeecCCCccccccc-cCcceEE
Q 047903 77 GAGGTINTCSVHGRCRPVLLSVAF-----EAKFVFFPFGD-----PKGKSRKNVKRINVFEKQSDFAHLDDY-DSHMHSL 145 (430)
Q Consensus 77 ~~~~~~~~~~mhd~~~~l~~~~~~-----~~~~~~~~~~~-----~~~~~~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L 145 (430)
. ++..+|+|||+|||+|.++++ +++.+.. .+. .....+..+|+++++ ++.+..++... +++|++|
T Consensus 475 ~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~-~~~~~~~~~~~~~~~~~rr~s~~-~~~~~~~~~~~~~~~L~tL 550 (889)
T KOG4658|consen 475 E--GRKETVKMHDVVREMALWIASDFGKQEENQIVS-DGVGLSEIPQVKSWNSVRRMSLM-NNKIEHIAGSSENPKLRTL 550 (889)
T ss_pred c--cceeEEEeeHHHHHHHHHHhccccccccceEEE-CCcCccccccccchhheeEEEEe-ccchhhccCCCCCCccceE
Confidence 4 567899999999999999999 6665544 321 122256678999999 88888788888 8899954
Q ss_pred EEEecCCc--cccccc-ccccccCCceeecCCCC-CcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCC
Q 047903 146 VLDLGSLV--LIHYLS-GIENLFLLRYLKLNIPS-LKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGS 221 (430)
Q Consensus 146 ~L~l~~~~--l~~lp~-~~~~l~~L~~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 221 (430)
-+.+|. +..++. .|..++.|++|||++|. +.++|.+| ++|.+|++|+++++.+..+|.++++|++|.+|++..
T Consensus 551 --ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 551 --LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred --EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 444553 566664 47789999999999876 78999999 999999999999999999999999999999999998
Q ss_pred cccCCCcC---ccCCCCcccceeecC--CCCcchhhhcCCCCCCceEEEEcccc-----------------------ccH
Q 047903 222 ITLPAHPR---KYCRSLENLNFISAL--HPCCCTEDILGRLPNLRNLRIWGDLS-----------------------YYQ 273 (430)
Q Consensus 222 ~~~~~~lp---~~l~~L~~L~~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~-----------------------~~~ 273 (430)
+.....+| ..+++|+.|.+.... .......+ +..+.+|+.+.+..... ...
T Consensus 628 ~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~ 706 (889)
T KOG4658|consen 628 TGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK 706 (889)
T ss_pred ccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc
Confidence 87655456 557788877776554 23445556 66666666666544331 011
Q ss_pred HHHHHHhcCCCCCCEEEEecCCC----------------CCCceEEEE---------EcccccCCcceEEEEccccCCcc
Q 047903 274 SLLSQSLCTLTCLESLKLVSESK----------------MPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDP 328 (430)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~~~~----------------~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~ 328 (430)
...+.++..+.+|+.|.+.+... ++++.++.+ ....+|++|+.|.+..|...++|
T Consensus 707 ~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 707 RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 12233455667778887776110 001111111 11234599999999999988876
Q ss_pred cccc---cCCCeEEEcCCCCCcccEE-EEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecC
Q 047903 329 KSRA---SSSRKLTCGSDGFPNLKVL-HLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWP 404 (430)
Q Consensus 329 ~~~~---~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 404 (430)
+... ...... ...|+++..+ .+.+...+..+....-.++.|+.+.+..||+++.+| .+.++.+.+|
T Consensus 787 i~~~k~~~~l~~~---i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 787 IPKLKALLELKEL---ILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred CCHHHHhhhcccE---EecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCc-------cccccceecc
Confidence 5111 111111 2345566666 466666666665555567778888888888777766 3444555554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.8e-33 Score=299.71 Aligned_cols=360 Identities=18% Similarity=0.145 Sum_probs=228.5
Q ss_pred hhhhHHHHhhcCChh-hhHHHHhhhcccCCCceechhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCCc
Q 047903 3 KPLGLWYFKYCRLPF-CLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGT 81 (430)
Q Consensus 3 ~i~~~l~~sY~~L~~-~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~ 81 (430)
+|+++|++|||+|++ ..|.||+|||+||.++.+ +.+..|.+.+.+. ++..++.|++++|++...
T Consensus 421 ~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~------ 485 (1153)
T PLN03210 421 KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE------ 485 (1153)
T ss_pred HHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC------
Confidence 689999999999987 599999999999998754 3466777776552 344588999999998743
Q ss_pred EeEEEEChhHHHHHHHHhhhcC-------cEee------------------------------ecCCCCCCCCCCeeEEE
Q 047903 82 INTCSVHGRCRPVLLSVAFEAK-------FVFF------------------------------PFGDPKGKSRKNVKRIN 124 (430)
Q Consensus 82 ~~~~~mhd~~~~l~~~~~~~~~-------~~~~------------------------------~~~~~~~~~~~~~r~L~ 124 (430)
..++|||++|++|+.+++++. +... .+....+....+++.|.
T Consensus 486 -~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~ 564 (1153)
T PLN03210 486 -DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLK 564 (1153)
T ss_pred -CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEE
Confidence 368999999999999987542 1100 00000011223334443
Q ss_pred Eee------------------------------cCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecC
Q 047903 125 VFE------------------------------KQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLN 173 (430)
Q Consensus 125 l~~------------------------------~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~ 173 (430)
+.. .+....+|..+ ..+|+ .|++++|.+..+|..+..+++|++|+++
T Consensus 565 ~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~--~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls 642 (1153)
T PLN03210 565 FYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV--KLQMQGSKLEKLWDGVHSLTGLRNIDLR 642 (1153)
T ss_pred EecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCc--EEECcCccccccccccccCCCCCEEECC
Confidence 331 22222223333 33444 7888888888888888888888999988
Q ss_pred CCC-CcccChHhhhcCCCccEEecCCC-CccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcc
Q 047903 174 IPS-LKSLPSPLLSNLLNLYTLDMPFS-YIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCC 249 (430)
Q Consensus 174 ~~~-i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~ 249 (430)
++. ++.+|. + +.+++|++|++++| .+..+|..++++++|++|++++|.....+| ..+++|+.|.+.+|......
T Consensus 643 ~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 643 GSKNLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred CCCCcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc
Confidence 765 667764 6 88889999999888 778888888889999999998876544477 45677777766655421111
Q ss_pred hhhhcCCCCCCceEEEEcccc---------------------------------------------------ccHHHHHH
Q 047903 250 TEDILGRLPNLRNLRIWGDLS---------------------------------------------------YYQSLLSQ 278 (430)
Q Consensus 250 ~~~~l~~l~~L~~L~l~~~~~---------------------------------------------------~~~~~~~~ 278 (430)
+. ..++|+.|++.++.. .....+|.
T Consensus 721 p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~ 796 (1153)
T PLN03210 721 PD----ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796 (1153)
T ss_pred cc----ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh
Confidence 10 012333333333320 02222333
Q ss_pred HhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCC
Q 047903 279 SLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLW 358 (430)
Q Consensus 279 ~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 358 (430)
+++.+++|+.|++++ |++++.++..+ .+ ++|+.|++++|..... + ....++|+.|++++ +.
T Consensus 797 si~~L~~L~~L~Ls~---C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~----------~---p~~~~nL~~L~Ls~-n~ 857 (1153)
T PLN03210 797 SIQNLHKLEHLEIEN---CINLETLPTGI-NL-ESLESLDLSGCSRLRT----------F---PDISTNISDLNLSR-TG 857 (1153)
T ss_pred hhhCCCCCCEEECCC---CCCcCeeCCCC-Cc-cccCEEECCCCCcccc----------c---cccccccCEeECCC-CC
Confidence 344444444444443 33333332111 23 4444454444432110 0 01234566666665 45
Q ss_pred CCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 359 LEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 359 l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
++.+|...+.+++|+.|++.+|++++.+|..+..+++|+.+++++|+
T Consensus 858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 66666666778999999999999999999888889999999999998
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.3e-24 Score=206.63 Aligned_cols=248 Identities=20% Similarity=0.255 Sum_probs=203.1
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP 225 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 225 (430)
+|||++|++.+.|..+..-+++-+|+|++|+|.++|.++|-+|..|-.|||++|.+..+|..+.+|..|++|+|++|.+.
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCcC----ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCc
Q 047903 226 AHPR----KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTL 300 (430)
Q Consensus 226 ~~lp----~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L 300 (430)
. .. .++++|+.|.+.+... ....+.. +..+.||+.++++.| ....+|..+..+++|+.|+|++ +.+
T Consensus 187 h-fQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~----N~i 257 (1255)
T KOG0444|consen 187 H-FQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG----NKI 257 (1255)
T ss_pred H-HHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc----Cce
Confidence 6 43 4556666666655554 3345566 888999999999998 5778899999999999999994 667
Q ss_pred eEEEEEcccccCCcceEEEEccccCCccc--------------ccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcC
Q 047903 301 SKIVLVEYQFPPRLTHLSFSNTELMEDPK--------------SRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGI 366 (430)
Q Consensus 301 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 366 (430)
+.|....+.- .+|++|+++.|++...|. ....+-+.++...+.+.+|+.+...+ ++++-+|...
T Consensus 258 teL~~~~~~W-~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEgl 335 (1255)
T KOG0444|consen 258 TELNMTEGEW-ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGL 335 (1255)
T ss_pred eeeeccHHHH-hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhh
Confidence 7777644455 788888888888877664 01111233444556677888888876 6777777777
Q ss_pred CccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 367 GAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 367 ~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
.-++.|+.|.++. +.+..+|+++.-++.|+.|++..+|
T Consensus 336 cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCc
Confidence 7899999999985 5788999999999999999999998
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=8.7e-22 Score=213.02 Aligned_cols=269 Identities=19% Similarity=0.192 Sum_probs=145.6
Q ss_pred CCCeeEEEEeecCCCc-cccccc---cCcceEEEEEecCCccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCCC
Q 047903 117 RKNVKRINVFEKQSDF-AHLDDY---DSHMHSLVLDLGSLVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLN 190 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~-~~~~~~---~~~L~~L~L~l~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~ 190 (430)
.+.++.|.+. ++... .++..+ +.+|+ +|++++|.++ .+|. +.+++|++|++++|.+. .+|..+ +++++
T Consensus 92 l~~L~~L~Ls-~n~~~~~ip~~~~~~l~~L~--~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~ 165 (968)
T PLN00113 92 LPYIQTINLS-NNQLSGPIPDDIFTTSSSLR--YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSS 165 (968)
T ss_pred CCCCCEEECC-CCccCCcCChHHhccCCCCC--EEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCC
Confidence 3445555555 33322 233332 44455 5555555554 3332 34556666666666655 455555 66666
Q ss_pred ccEEecCCCCcc-ccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEE
Q 047903 191 LYTLDMPFSYID-HTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIW 266 (430)
Q Consensus 191 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 266 (430)
|++|++++|.+. .+|..++++++|++|++++|.+.+.+| +.+++|+.|.+..+......+.. ++.+++|++|++.
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECc
Confidence 777776666544 556666666667777666666665455 45555555555544444445555 6666777777776
Q ss_pred ccccccHHHHHHHhcCCCCCCEEEEecCC---C-------CCCceEEEE-----------EcccccCCcceEEEEccccC
Q 047903 267 GDLSYYQSLLSQSLCTLTCLESLKLVSES---K-------MPTLSKIVL-----------VEYQFPPRLTHLSFSNTELM 325 (430)
Q Consensus 267 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~-------~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~ 325 (430)
+|. .....+..+..+++|+.|+++.+. . +++|+.|++ ++..+ ++|+.|++++|.+.
T Consensus 245 ~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~ 321 (968)
T PLN00113 245 YNN--LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFT 321 (968)
T ss_pred Cce--eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccC
Confidence 665 444555666666677777666410 0 223333333 12233 34444444444332
Q ss_pred CcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 326 EDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
.. .+.....+++|+.|+++++.-...++...+.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 322 ~~----------~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 322 GK----------IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred Cc----------CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 11 11223446666666666643323344444556667777777665445566666666677777776655
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=4.8e-22 Score=215.02 Aligned_cols=282 Identities=20% Similarity=0.219 Sum_probs=195.4
Q ss_pred CCCCeeEEEEeecCCCc-cccccccCcceEEEEEecCCccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCCCcc
Q 047903 116 SRKNVKRINVFEKQSDF-AHLDDYDSHMHSLVLDLGSLVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLY 192 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~-~~~~~~~~~L~~L~L~l~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~ 192 (430)
...++|+|.+. ++... .++...+++|+ +|++++|.+. .+|..++++++|++|++++|.+. .+|..+ +++++|+
T Consensus 116 ~l~~L~~L~Ls-~n~l~~~~p~~~l~~L~--~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLS-NNNFTGSIPRGSIPNLE--TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLE 191 (968)
T ss_pred cCCCCCEEECc-CCccccccCccccCCCC--EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCC
Confidence 45678888888 55543 34444477888 8888888876 67778888888888888888876 667777 8888888
Q ss_pred EEecCCCCcc-ccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903 193 TLDMPFSYID-HTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 268 (430)
Q Consensus 193 ~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 268 (430)
+|++++|.+. .+|..++++++|++|++++|.+.+.+| +.+++|+.|.+.++......+.. ++++++|+.|++.++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n 270 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQN 270 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCC
Confidence 8888888665 578888888888888888888877677 66777777777666544455666 888888888888877
Q ss_pred ccccHHHHHHHhcCCCCCCEEEEecC---CC-------CCCceEEEE-----------EcccccCCcceEEEEccccCCc
Q 047903 269 LSYYQSLLSQSLCTLTCLESLKLVSE---SK-------MPTLSKIVL-----------VEYQFPPRLTHLSFSNTELMED 327 (430)
Q Consensus 269 ~~~~~~~~~~~l~~l~~L~~L~l~~~---~~-------~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~ 327 (430)
. .....+..+..+++|+.|+++++ +. +++|+.|++ ++..+ ++|+.|++++|.+...
T Consensus 271 ~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 271 K--LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGE 347 (968)
T ss_pred e--eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCc
Confidence 5 44556667777888888888761 11 456777766 34567 8888888888877532
Q ss_pred -cc--ccc-------cCCCe----EEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCC
Q 047903 328 -PK--SRA-------SSSRK----LTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCI 393 (430)
Q Consensus 328 -~~--~~~-------~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l 393 (430)
|. ... ..... ++.....+++|+.|++.++.-...++...+.+++|+.|++.+|.....+|..+..+
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 21 000 00000 01112234556666666533222334444567888888888877656778778888
Q ss_pred CCCCEEEEecCh
Q 047903 394 KSLNKFNCWWPQ 405 (430)
Q Consensus 394 ~~L~~L~l~~~~ 405 (430)
++|+.|++++|.
T Consensus 428 ~~L~~L~Ls~N~ 439 (968)
T PLN00113 428 PLVYFLDISNNN 439 (968)
T ss_pred CCCCEEECcCCc
Confidence 888888888876
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-21 Score=183.36 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=127.2
Q ss_pred CCCeeEEEEeecCCCccc-cccc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903 117 RKNVKRINVFEKQSDFAH-LDDY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY 192 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~-~~~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~ 192 (430)
.+.+..|++. ++.+..+ .+.+ .+.|| +|||+.|.++.+| ..|..=.++++|+|++|.|+.+-..-|.++.+|.
T Consensus 124 sghl~~L~L~-~N~I~sv~se~L~~l~alr--slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 124 SGHLEKLDLR-HNLISSVTSEELSALPALR--SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred ccceeEEeee-ccccccccHHHHHhHhhhh--hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 3456777777 5554433 2333 66677 9999999999888 5777778999999999999988766669999999
Q ss_pred EEecCCCCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEc
Q 047903 193 TLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWG 267 (430)
Q Consensus 193 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 267 (430)
+|.|+.|.++.+|.- |++|++|+.|+|..|++.- +. ..+++|+.|++-.++.+.-.-.. |-.+.++++|++..
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve~ltFqgL~Sl~nlklqrN~I~kL~DG~-Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI-VEGLTFQGLPSLQNLKLQRNDISKLDDGA-FYGLEKMEHLNLET 278 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccccceee-ehhhhhcCchhhhhhhhhhcCcccccCcc-eeeecccceeeccc
Confidence 999999999999864 7779999999999998875 43 56677777766655532222223 67788888888888
Q ss_pred cccccHHHHHHHhcCCCCCCEEEEec
Q 047903 268 DLSYYQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 268 ~~~~~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
|+ ....-..++.+++.|+.|+++.
T Consensus 279 N~--l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 279 NR--LQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred ch--hhhhhcccccccchhhhhccch
Confidence 86 4444456777888888888875
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.8e-21 Score=182.71 Aligned_cols=287 Identities=19% Similarity=0.184 Sum_probs=196.3
Q ss_pred CcEeeecCCCCCCCCCCeeEEEEeecCCCccccccccCcceEE-EEEecCCcccccc-cccccccCCceeecCCCCCccc
Q 047903 103 KFVFFPFGDPKGKSRKNVKRINVFEKQSDFAHLDDYDSHMHSL-VLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSL 180 (430)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~r~L~l~~~~~~~~~~~~~~~~L~~L-~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l 180 (430)
+.+.. ++...+....++.+|.+. .+.+..+..+-+..|.+| +|.|+.|+++.+| ..|++|++|+.|+|..|+|..+
T Consensus 159 N~is~-i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 159 NLISE-IPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred chhhc-ccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 34444 555555555667788877 665554544443333333 7888888888777 4677788888888888877755
Q ss_pred ChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCcccCCCcC-c---cCCCCcccceeecCCCCcchhhhcC
Q 047903 181 PSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR-K---YCRSLENLNFISALHPCCCTEDILG 255 (430)
Q Consensus 181 p~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~---~l~~L~~L~~~~~~~~~~~~~~~l~ 255 (430)
--.-|.+|++|+.|.|..|.|.++..+ |..+.++++|+|+.|++.. +. + .+++|+.|++.++......+.. ..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-vn~g~lfgLt~L~~L~lS~NaI~rih~d~-Ws 314 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-VNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WS 314 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-hhcccccccchhhhhccchhhhheeecch-hh
Confidence 333348888888888888888877766 7778888888888888776 55 3 4455555555555444455566 67
Q ss_pred CCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccC
Q 047903 256 RLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASS 334 (430)
Q Consensus 256 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~ 334 (430)
..++|++|+++.|. ...-.+.+|..+..|+.|.|+. +++..+.- .|..+ ++|++|||++|.+..-. .
T Consensus 315 ftqkL~~LdLs~N~--i~~l~~~sf~~L~~Le~LnLs~----Nsi~~l~e~af~~l-ssL~~LdLr~N~ls~~I-----E 382 (873)
T KOG4194|consen 315 FTQKLKELDLSSNR--ITRLDEGSFRVLSQLEELNLSH----NSIDHLAEGAFVGL-SSLHKLDLRSNELSWCI-----E 382 (873)
T ss_pred hcccceeEeccccc--cccCChhHHHHHHHhhhhcccc----cchHHHHhhHHHHh-hhhhhhcCcCCeEEEEE-----e
Confidence 77888888888886 4444556777788888888873 43443321 45678 89999999999874321 1
Q ss_pred CCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEe------cChHH
Q 047903 335 SRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCW------WPQLE 407 (430)
Q Consensus 335 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~------~~~~~ 407 (430)
+ -.....++++|+.|.+.+ ++++.++.. ...+++|+.|++.+++....-|..+..+ .|++|.+. +|.-.
T Consensus 383 D--aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 383 D--AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred c--chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHH
Confidence 1 122345699999999998 778887643 3468999999999987555557788888 89998765 46644
Q ss_pred HH
Q 047903 408 LR 409 (430)
Q Consensus 408 ~~ 409 (430)
|.
T Consensus 459 Wl 460 (873)
T KOG4194|consen 459 WL 460 (873)
T ss_pred HH
Confidence 43
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=1.2e-20 Score=179.72 Aligned_cols=263 Identities=17% Similarity=0.176 Sum_probs=159.1
Q ss_pred CCeeEEEEeecCCCccccccc--cCcceEEEEEecCCccc--ccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903 118 KNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~ 193 (430)
+++.+|++. .+....+...+ ++.|| .+++..|++. .+|+.+..+..|..|+|+.|++++.|..+ ..-+++-+
T Consensus 55 qkLEHLs~~-HN~L~~vhGELs~Lp~LR--sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L-E~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMA-HNQLISVHGELSDLPRLR--SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL-EYAKNSIV 130 (1255)
T ss_pred hhhhhhhhh-hhhhHhhhhhhccchhhH--HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh-hhhcCcEE
Confidence 345555555 33333333333 55666 6666667655 67777777777777777777777777777 77777777
Q ss_pred EecCCCCccccchh-hccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 194 LDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 194 L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
|+|++|+|..+|.. +.+|+.|-.||||+|++.. +| ..+..|++|.+.++...-..... +..+++|+.|.+++.+
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccccc
Confidence 77777777777766 5677777777777777777 66 56666777766655543334445 5556666666666654
Q ss_pred cccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCccc
Q 047903 270 SYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLK 349 (430)
Q Consensus 270 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 349 (430)
.....+|.++..+.+|+.++++ +++|..++-.+-.+ ++|+.|+|++|.+++.. ...+...+|+
T Consensus 209 -RTl~N~Ptsld~l~NL~dvDlS----~N~Lp~vPecly~l-~~LrrLNLS~N~iteL~-----------~~~~~W~~lE 271 (1255)
T KOG0444|consen 209 -RTLDNIPTSLDDLHNLRDVDLS----ENNLPIVPECLYKL-RNLRRLNLSGNKITELN-----------MTEGEWENLE 271 (1255)
T ss_pred -chhhcCCCchhhhhhhhhcccc----ccCCCcchHHHhhh-hhhheeccCcCceeeee-----------ccHHHHhhhh
Confidence 2344556677777777777777 44444443233456 88888999988875532 2223344555
Q ss_pred EEEEeeCCCCCceEEcCCccccccEeEEeecC-CCCcCCCCCCCCCCCCEEEEecC
Q 047903 350 VLHLKSMLWLEEWTMGIGAMPKLECLIINPCA-YLKKMPEQPWCIKSLNKFNCWWP 404 (430)
Q Consensus 350 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~-~l~~lp~~l~~l~~L~~L~l~~~ 404 (430)
+|+++. +.+..+|.....+++|++|++.++. ....+|++++.+.+|+.+...++
T Consensus 272 tLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 272 TLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred hhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 555554 4444444444445555555555432 11335555555555554444443
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=1.2e-17 Score=181.89 Aligned_cols=271 Identities=21% Similarity=0.224 Sum_probs=186.2
Q ss_pred CCeeEEEEeecCCCcc--cc-ccc--cCcceEEEEEecCCc------cc-cccccccccc-CCceeecCCCCCcccChHh
Q 047903 118 KNVKRINVFEKQSDFA--HL-DDY--DSHMHSLVLDLGSLV------LI-HYLSGIENLF-LLRYLKLNIPSLKSLPSPL 184 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~~--~~-~~~--~~~L~~L~L~l~~~~------l~-~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i 184 (430)
.+++.+++. -..... +. +.+ +++|+ .|.+..+. +. .+|..+..++ +||+|++.++.++.+|..+
T Consensus 532 ~~v~~i~l~-~~~~~~~~i~~~aF~~m~~L~--~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f 608 (1153)
T PLN03210 532 KKVLGITLD-IDEIDELHIHENAFKGMRNLL--FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF 608 (1153)
T ss_pred ceeeEEEec-cCccceeeecHHHHhcCcccc--EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC
Confidence 456666665 333321 12 223 67777 55554432 22 5677777664 6999999999999998776
Q ss_pred hhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCce
Q 047903 185 LSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRN 262 (430)
Q Consensus 185 ~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~ 262 (430)
...+|+.|++++|++..+|.++..+++|+.|+++++.....+| ..+++|+.|.+.+|......+.. ++.+++|+.
T Consensus 609 --~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~ 685 (1153)
T PLN03210 609 --RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLNKLED 685 (1153)
T ss_pred --CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-hhccCCCCE
Confidence 4689999999999999999888899999999999876444478 77888888888887765566777 888999999
Q ss_pred EEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCccccc-ccC-------
Q 047903 263 LRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSR-ASS------- 334 (430)
Q Consensus 263 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~-~~~------- 334 (430)
|++.+|. ....+|..+ ++++|+.|++++ |..++.++ ..+++|+.|++++|.+...|... ...
T Consensus 686 L~L~~c~--~L~~Lp~~i-~l~sL~~L~Lsg---c~~L~~~p----~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 686 LDMSRCE--NLEILPTGI-NLKSLYRLNLSG---CSRLKSFP----DISTNISWLDLDETAIEEFPSNLRLENLDELILC 755 (1153)
T ss_pred EeCCCCC--CcCccCCcC-CCCCCCEEeCCC---CCCccccc----cccCCcCeeecCCCcccccccccccccccccccc
Confidence 9999886 444555443 678889998887 55554432 12256666666666554433100 000
Q ss_pred ---CCeE--------EEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEec
Q 047903 335 ---SRKL--------TCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWW 403 (430)
Q Consensus 335 ---~~~~--------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 403 (430)
...+ .......++|+.|++++++.+..+|...+.+++|+.|++.+|++++.+|..+ ++++|+.|++++
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSG 834 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCC
Confidence 0000 0011224678888888877777777777788888888888888888888766 678888888888
Q ss_pred Ch
Q 047903 404 PQ 405 (430)
Q Consensus 404 ~~ 405 (430)
|.
T Consensus 835 c~ 836 (1153)
T PLN03210 835 CS 836 (1153)
T ss_pred CC
Confidence 76
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=6.9e-20 Score=166.24 Aligned_cols=139 Identities=25% Similarity=0.185 Sum_probs=80.3
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP 225 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 225 (430)
.+++.+|.+..+|+..-+++.|+.|+...|-++.+|+++ +.+.+|+.|+++.|++..+| +|..+..|++|+++.|.+.
T Consensus 164 ~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l-g~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL-GGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE 241 (565)
T ss_pred HhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh-cchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH
Confidence 566666666655544444666666666666666666666 66666666666666666666 3666666666666666666
Q ss_pred CCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903 226 AHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 226 ~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
- +| ..+.++..|++.++.. ...+.+ +..+.+|..|+++++ ....+|.+++++ +|+.|-+.+
T Consensus 242 ~-lpae~~~~L~~l~vLDLRdNkl-ke~Pde-~clLrsL~rLDlSNN---~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 242 M-LPAEHLKHLNSLLVLDLRDNKL-KEVPDE-ICLLRSLERLDLSNN---DISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred h-hHHHHhcccccceeeecccccc-ccCchH-HHHhhhhhhhcccCC---ccccCCcccccc-eeeehhhcC
Confidence 5 66 2333344444333321 234445 556666666676666 455556666666 666665543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.9e-20 Score=169.87 Aligned_cols=257 Identities=18% Similarity=0.145 Sum_probs=212.2
Q ss_pred eeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecC
Q 047903 120 VKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP 197 (430)
Q Consensus 120 ~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~ 197 (430)
+..+.+. +++...+.+.+ +..+. ||++.+|.+.++|++++.+..++.|+.+.|++.++|+.+ +.+.+|..|+.+
T Consensus 47 l~~lils-~N~l~~l~~dl~nL~~l~--vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILS-HNDLEVLREDLKNLACLT--VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLDCS 122 (565)
T ss_pred hhhhhhc-cCchhhccHhhhccccee--EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhhcc
Confidence 4555666 66666566655 77777 999999999999999999999999999999999999999 999999999999
Q ss_pred CCCccccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHH
Q 047903 198 FSYIDHTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQS 274 (430)
Q Consensus 198 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 274 (430)
+|.+..+|.+++.+..|..++..+|++.. +| ..+.++..+...+.... ..+.+ .-.++.|++|+...+ ..+
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~-~i~m~~L~~ld~~~N---~L~ 196 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPEN-HIAMKRLKHLDCNSN---LLE 196 (565)
T ss_pred ccceeecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHH-HHHHHHHHhcccchh---hhh
Confidence 99999999999999999999999999998 88 44444555544444332 23333 344888999988887 788
Q ss_pred HHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEe
Q 047903 275 LLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLK 354 (430)
Q Consensus 275 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 354 (430)
.+|..++.+.+|+.|++. -..++.++ .|++. ..|.+|.+..|++...|. .....++++..|++.
T Consensus 197 tlP~~lg~l~~L~~LyL~----~Nki~~lP-ef~gc-s~L~Elh~g~N~i~~lpa----------e~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLR----RNKIRFLP-EFPGC-SLLKELHVGENQIEMLPA----------EHLKHLNSLLVLDLR 260 (565)
T ss_pred cCChhhcchhhhHHHHhh----hcccccCC-CCCcc-HHHHHHHhcccHHHhhHH----------HHhcccccceeeecc
Confidence 899999999999999998 56777776 66777 889999999998765431 113468899999999
Q ss_pred eCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 355 SMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 355 ~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+ +++++.|.+..-+.+|++|+++++ .+..+|..++++ .|+.|.+.|+|
T Consensus 261 d-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 261 D-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred c-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 8 889999988878899999999985 589999999999 99999999999
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.5e-15 Score=154.84 Aligned_cols=241 Identities=20% Similarity=0.094 Sum_probs=135.7
Q ss_pred eEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC
Q 047903 121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY 200 (430)
Q Consensus 121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~ 200 (430)
..|.+. ++....+|+.+.++++ .|++.+|.++.+|.. .++|++|++++|+++.+|.. .++|+.|++++|.
T Consensus 204 ~~LdLs-~~~LtsLP~~l~~~L~--~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVG-ESGLTTLPDCLPAHIT--TLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNP 273 (788)
T ss_pred cEEEcC-CCCCCcCCcchhcCCC--EEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCc
Confidence 345555 4455556665555666 666677777666642 35667777777777766632 2455666666666
Q ss_pred ccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHh
Q 047903 201 IDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSL 280 (430)
Q Consensus 201 l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 280 (430)
+..+|... .+|+.|++++|.+.. +|..+++|+.|.+.++... .++. + ..+|+.|.+.+|. ...+|.
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~~p~~L~~LdLS~N~L~--~Lp~-l--p~~L~~L~Ls~N~---L~~LP~-- 339 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGNQLTS-LPVLPPGLQELSVSDNQLA--SLPA-L--PSELCKLWAYNNQ---LTSLPT-- 339 (788)
T ss_pred hhhhhhch---hhcCEEECcCCcccc-ccccccccceeECCCCccc--cCCC-C--cccccccccccCc---cccccc--
Confidence 65555422 345555555555555 5533444555544433221 1111 0 1234444444442 111111
Q ss_pred cCCCCCCEEEEecCC------CCCCceEEEE------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcc
Q 047903 281 CTLTCLESLKLVSES------KMPTLSKIVL------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNL 348 (430)
Q Consensus 281 ~~l~~L~~L~l~~~~------~~~~L~~L~l------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 348 (430)
...+|+.|+++++. .+++|+.|.+ .+..+|.+|+.|++++|.+...| ...++|
T Consensus 340 -lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP--------------~l~s~L 404 (788)
T PRK15387 340 -LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP--------------VLPSEL 404 (788)
T ss_pred -cccccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCC--------------CcccCC
Confidence 01244555554310 0122333322 11222357788888888765433 123578
Q ss_pred cEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 349 KVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 349 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+.|++++ +.+..+|. .+.+|+.|++++| +++.+|..+.++++|+.|++++|+
T Consensus 405 ~~LdLS~-N~LssIP~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 405 KELMVSG-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CEEEccC-CcCCCCCc---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 9999998 55776653 2457889999985 588999999999999999999988
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=1.5e-15 Score=155.70 Aligned_cols=243 Identities=14% Similarity=0.141 Sum_probs=171.1
Q ss_pred CeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903 119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~ 198 (430)
+...|.+. +.....+|..+.++++ .|++++|.++.+|..+. .+|++|++++|.++.+|..+ . .+|+.|++++
T Consensus 179 ~~~~L~L~-~~~LtsLP~~Ip~~L~--~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLK-ILGLTTIPACIPEQIT--TLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-P--DTIQEMELSI 250 (754)
T ss_pred CceEEEeC-CCCcCcCCcccccCCc--EEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-h--ccccEEECcC
Confidence 45677777 6666667776677788 88899999998887654 58999999999999998766 3 4789999999
Q ss_pred CCccccchhhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH
Q 047903 199 SYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS 277 (430)
Q Consensus 199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 277 (430)
|.+..+|..+. .+|+.|++++|.+.. +| .-.++|+.|.+.++... ..+.. +. ++|+.|++++|. ...++
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~~sL~~L~Ls~N~Lt-~LP~~-lp--~sL~~L~Ls~N~---Lt~LP 320 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISC-LPENLPEELRYLSVYDNSIR-TLPAH-LP--SGITHLNVQSNS---LTALP 320 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCc-cccccCCCCcEEECCCCccc-cCccc-ch--hhHHHHHhcCCc---cccCC
Confidence 98888888764 578999999998887 88 34457777776655432 12222 22 467788888775 22233
Q ss_pred HHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCC
Q 047903 278 QSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSML 357 (430)
Q Consensus 278 ~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 357 (430)
..+ .++|+.|++++ ..++.++ ..+|++|+.|++++|++...| ....++|+.|++++ +
T Consensus 321 ~~l--~~sL~~L~Ls~----N~Lt~LP---~~l~~sL~~L~Ls~N~L~~LP-------------~~lp~~L~~LdLs~-N 377 (754)
T PRK15370 321 ETL--PPGLKTLEAGE----NALTSLP---ASLPPELQVLDVSKNQITVLP-------------ETLPPTITTLDVSR-N 377 (754)
T ss_pred ccc--cccceeccccC----CccccCC---hhhcCcccEEECCCCCCCcCC-------------hhhcCCcCEEECCC-C
Confidence 222 25778888774 3344432 234478999999999875433 11236899999998 4
Q ss_pred CCCceEEcCCccccccEeEEeecCCCCcCCCCCC----CCCCCCEEEEecCh
Q 047903 358 WLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPW----CIKSLNKFNCWWPQ 405 (430)
Q Consensus 358 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l~~~~ 405 (430)
++..+|... .++|+.|++++| ++..+|..+. .++++..+++.++|
T Consensus 378 ~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 378 ALTNLPENL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCCCCCHhH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 576665432 347999999996 5778876543 35788999999988
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.2e-17 Score=133.47 Aligned_cols=167 Identities=22% Similarity=0.250 Sum_probs=138.1
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
+++.+ .|-+++|.++.+|+.+..+.+|+.|++.+|+++++|.++ +.+++|+.|+++-|.+..+|.+|+.++.|++||
T Consensus 32 ~s~IT--rLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNIT--RLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhh--hhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 66666 788899999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCCcccCCC-cCccCCCCcccceeecCC--CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC
Q 047903 219 FGSITLPAH-PRKYCRSLENLNFISALH--PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES 295 (430)
Q Consensus 219 l~~~~~~~~-lp~~l~~L~~L~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 295 (430)
+++|++... +|+++-.+++|.-.+.+. ....+.+ ++++++|+.|.+..+ ..-.+|..++.+..|+.|.+.+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqg-- 182 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQG-- 182 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhccc--
Confidence 999998765 777766666665555553 3456778 999999999999888 5667788888888888888874
Q ss_pred CCCCceEEEEEcccccCCcceEEEEccc
Q 047903 296 KMPTLSKIVLVEYQFPPRLTHLSFSNTE 323 (430)
Q Consensus 296 ~~~~L~~L~l~~~~lp~~L~~L~L~~~~ 323 (430)
..|+.+ ||.|-.|++.++.
T Consensus 183 --nrl~vl-------ppel~~l~l~~~k 201 (264)
T KOG0617|consen 183 --NRLTVL-------PPELANLDLVGNK 201 (264)
T ss_pred --ceeeec-------ChhhhhhhhhhhH
Confidence 445544 3666666666553
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=2.9e-16 Score=156.43 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=72.4
Q ss_pred CCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEec
Q 047903 118 KNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM 196 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L 196 (430)
.++++|... .+......... ..+|. .++++.|.++.+|.+++.+.+|..++...|.++.+|..+ ....+|+.|.+
T Consensus 219 ~~l~~L~a~-~n~l~~~~~~p~p~nl~--~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri-~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYAD-HNPLTTLDVHPVPLNLQ--YLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRI-SRITSLVSLSA 294 (1081)
T ss_pred cchheeeec-cCcceeeccccccccce--eeecchhhhhcchHHHHhcccceEecccchhHHhhHHHH-hhhhhHHHHHh
Confidence 445566655 44443233333 45555 777777777777777777777777777777777777777 77777777777
Q ss_pred CCCCccccchhhccCcccceeecCCcccCCCcC
Q 047903 197 PFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR 229 (430)
Q Consensus 197 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp 229 (430)
..|.+..+|....+++.|++|+|..|.+.. +|
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp 326 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LP 326 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhccccc-cc
Confidence 777777777766667777777777777666 44
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=2.1e-14 Score=147.33 Aligned_cols=225 Identities=18% Similarity=0.206 Sum_probs=163.9
Q ss_pred CCCCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD 195 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~ 195 (430)
.+..++.|.+. ++.+..++..+.++|+ .|++++|.++.+|..+. .+|+.|++++|.+..+|..+ . .+|+.|+
T Consensus 197 Ip~~L~~L~Ls-~N~LtsLP~~l~~nL~--~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l-~--s~L~~L~ 268 (754)
T PRK15370 197 IPEQITTLILD-NNELKSLPENLQGNIK--TLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL-P--SALQSLD 268 (754)
T ss_pred cccCCcEEEec-CCCCCcCChhhccCCC--EEECCCCccccCChhhh--ccccEEECcCCccCcCChhH-h--CCCCEEE
Confidence 35578999999 8888878877778999 99999999999987654 47999999999999999877 4 5899999
Q ss_pred cCCCCccccchhhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHH
Q 047903 196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQS 274 (430)
Q Consensus 196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 274 (430)
+++|+++.+|..+. ++|++|++++|.+.. +| .-.++|+.|.+.++... ..+.. + .++|+.|++.+|. ..
T Consensus 269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt-~LP~~-l--~~sL~~L~Ls~N~---Lt 338 (754)
T PRK15370 269 LFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLT-ALPET-L--PPGLKTLEAGENA---LT 338 (754)
T ss_pred CcCCccCccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccc-cCCcc-c--cccceeccccCCc---cc
Confidence 99999999998654 589999999999998 88 33456777777665432 12222 2 3688999998885 23
Q ss_pred HHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEe
Q 047903 275 LLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLK 354 (430)
Q Consensus 275 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 354 (430)
.++..+. ++|+.|++++ .+++.++ ..+|++|+.|++++|.+...|. ...++|+.|+++
T Consensus 339 ~LP~~l~--~sL~~L~Ls~----N~L~~LP---~~lp~~L~~LdLs~N~Lt~LP~-------------~l~~sL~~LdLs 396 (754)
T PRK15370 339 SLPASLP--PELQVLDVSK----NQITVLP---ETLPPTITTLDVSRNALTNLPE-------------NLPAALQIMQAS 396 (754)
T ss_pred cCChhhc--CcccEEECCC----CCCCcCC---hhhcCCcCEEECCCCcCCCCCH-------------hHHHHHHHHhhc
Confidence 3444442 6899999985 3444432 1334789999999998765431 112367778887
Q ss_pred eCCCCCceEEcC----CccccccEeEEeecC
Q 047903 355 SMLWLEEWTMGI----GAMPKLECLIINPCA 381 (430)
Q Consensus 355 ~~~~l~~~~~~~----~~~~~L~~L~l~~c~ 381 (430)
+ +++..+|... +.++++..|.+.+++
T Consensus 397 ~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 397 R-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred c-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 7 5566554322 235777888888876
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=2.3e-16 Score=127.61 Aligned_cols=147 Identities=21% Similarity=0.310 Sum_probs=132.1
Q ss_pred CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~ 193 (430)
....+.+|.++ .++...++..+ +.+|+ +|++.+|+++++|.++++++.||.|++.-|++..+|..+ +.++-|+.
T Consensus 31 ~~s~ITrLtLS-HNKl~~vppnia~l~nle--vln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLS-HNKLTVVPPNIAELKNLE--VLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFPALEV 106 (264)
T ss_pred chhhhhhhhcc-cCceeecCCcHHHhhhhh--hhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCchhhh
Confidence 35678899999 88888888888 99999 999999999999999999999999999999999999999 99999999
Q ss_pred EecCCCCcc--ccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903 194 LDMPFSYID--HTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 268 (430)
Q Consensus 194 L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 268 (430)
||+.+|++. .+|..|..+..|+-|+++.|.+.- +| +.+++||.|.+.++.. ...+.+ ++.+++|++|.|.++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndl-l~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDL-LSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCch-hhCcHH-HHHHHHHHHHhcccc
Confidence 999999665 789999999999999999999998 88 8888888887776652 367888 999999999999998
Q ss_pred c
Q 047903 269 L 269 (430)
Q Consensus 269 ~ 269 (430)
.
T Consensus 184 r 184 (264)
T KOG0617|consen 184 R 184 (264)
T ss_pred e
Confidence 4
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=1.2e-15 Score=138.68 Aligned_cols=259 Identities=16% Similarity=0.159 Sum_probs=152.9
Q ss_pred CccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC-CCccccchh-
Q 047903 131 DFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF-SYIDHTADE- 207 (430)
Q Consensus 131 ~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp~~- 207 (430)
..++|..+.+... .++|..|.|+.+| .+|+.+++||.|+|+.|+|+.|.+..|.++..|-.|-+.+ |+|+.+|.+
T Consensus 58 L~eVP~~LP~~tv--eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 58 LTEVPANLPPETV--EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cccCcccCCCcce--EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 3446666555555 6777777777777 4777788888888888887777444447777777776666 577777765
Q ss_pred hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc----------cccH
Q 047903 208 FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL----------SYYQ 273 (430)
Q Consensus 208 i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~ 273 (430)
|++|..|+.|.+.-|++.- ++ ..++++..|.+.++......-.. +..+..++.+.+..+. ....
T Consensus 136 F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~t-f~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGT-FQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred hhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhhcccc-ccchhccchHhhhcCccccccccchhhhHH
Confidence 7777777777777777666 55 45555555555544321111112 4444455544443332 0011
Q ss_pred HHHHHHhcCCCCCCEEEEec---CCC-----CCCceEEEE---------------EcccccCCcceEEEEccccCCcccc
Q 047903 274 SLLSQSLCTLTCLESLKLVS---ESK-----MPTLSKIVL---------------VEYQFPPRLTHLSFSNTELMEDPKS 330 (430)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~---~~~-----~~~L~~L~l---------------~~~~lp~~L~~L~L~~~~l~~~~~~ 330 (430)
...+..++..+......+.. +.+ .-+++.+.- .|..+ ++|++|+|++|.+....
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~-- 290 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIE-- 290 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhh--
Confidence 11122222222111111111 000 000111100 35567 99999999999886531
Q ss_pred cccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 331 RASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
.....+...+++|.+.. ++++.+... ...+..|+.|++.++..-.-.|..+..+.+|.+|.+-++|
T Consensus 291 --------~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 291 --------DGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred --------hhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 11234566788888887 556655322 2357899999999976445567788999999999997655
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=5.2e-14 Score=143.80 Aligned_cols=227 Identities=14% Similarity=0.037 Sum_probs=151.5
Q ss_pred CCCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEec
Q 047903 117 RKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM 196 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L 196 (430)
+..++.|.+. ++.+..++. ..++|+ .|++++|.++.+|.. .++|+.|++++|.++.+|... .+|+.|++
T Consensus 221 ~~~L~~L~L~-~N~Lt~LP~-lp~~Lk--~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp----~~L~~L~L 289 (788)
T PRK15387 221 PAHITTLVIP-DNNLTSLPA-LPPELR--TLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP----SGLCKLWI 289 (788)
T ss_pred hcCCCEEEcc-CCcCCCCCC-CCCCCc--EEEecCCccCcccCc---ccccceeeccCCchhhhhhch----hhcCEEEC
Confidence 3468999999 777776654 367888 999999999988864 357889999999988887532 56778888
Q ss_pred CCCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCC-CCCceEEEEccccccHHH
Q 047903 197 PFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRL-PNLRNLRIWGDLSYYQSL 275 (430)
Q Consensus 197 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~ 275 (430)
++|+++.+|.. .++|++|++++|.+.. +|....+|+.|.+.++.. .. +..+ .+|+.|++++|. ...
T Consensus 290 s~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L-----~~-LP~lp~~Lq~LdLS~N~---Ls~ 356 (788)
T PRK15387 290 FGNQLTSLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQL-----TS-LPTLPSGLQELSVSDNQ---LAS 356 (788)
T ss_pred cCCcccccccc---ccccceeECCCCcccc-CCCCcccccccccccCcc-----cc-ccccccccceEecCCCc---cCC
Confidence 88888888863 4678888999888887 774444555555544332 11 2222 367777777764 112
Q ss_pred HHHHhcCCCCCCEEEEecCC------CCCCceEEEE------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCC
Q 047903 276 LSQSLCTLTCLESLKLVSES------KMPTLSKIVL------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSD 343 (430)
Q Consensus 276 ~~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~ 343 (430)
+|.. ..+|+.|+++.+. .+.+|+.|++ .+...|++|+.|++++|.+...| .
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP--------------~ 419 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP--------------M 419 (788)
T ss_pred CCCC---CcccceehhhccccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCC--------------c
Confidence 2211 1234444443310 0234555554 12223378999999999886543 1
Q ss_pred CCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCc
Q 047903 344 GFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKK 385 (430)
Q Consensus 344 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 385 (430)
.+.+|+.|++++ +++..+|...+.+++|+.|++++|+--..
T Consensus 420 l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 420 LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCch
Confidence 234788899987 66888887777899999999999874333
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=9.1e-16 Score=152.91 Aligned_cols=240 Identities=21% Similarity=0.207 Sum_probs=181.4
Q ss_pred CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~ 193 (430)
.+.++.++++. .+....+++-+ +.+|. .++..+|.+..+|..+.....|++|....|.++.+|+.. ++++.|++
T Consensus 239 ~p~nl~~~dis-~n~l~~lp~wi~~~~nle--~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l-e~~~sL~t 314 (1081)
T KOG0618|consen 239 VPLNLQYLDIS-HNNLSNLPEWIGACANLE--ALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL-EGLKSLRT 314 (1081)
T ss_pred ccccceeeecc-hhhhhcchHHHHhcccce--EecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc-cccceeee
Confidence 57789999998 66666677555 99999 999999999999999999999999999999999999988 99999999
Q ss_pred EecCCCCccccchh-hccCcc-cceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEc
Q 047903 194 LDMPFSYIDHTADE-FWKMNN-LRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWG 267 (430)
Q Consensus 194 L~L~~~~l~~lp~~-i~~L~~-L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 267 (430)
|+|..|++..+|.. +..+.. |+.|+.+.|.+.. .| ..++.|+.|.+.++.......+. +.++.+|+.|++++
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSY 392 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecc
Confidence 99999999999986 444444 8889888888887 77 56788888888888777777887 99999999999999
Q ss_pred cccccHHHHH-HHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCC
Q 047903 268 DLSYYQSLLS-QSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFP 346 (430)
Q Consensus 268 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (430)
|. ...+| ..+.+++.|+.|++++ +.|+.|...+..+ +.|++|...+|++...| ....++
T Consensus 393 Nr---L~~fpas~~~kle~LeeL~LSG----NkL~~Lp~tva~~-~~L~tL~ahsN~l~~fP------------e~~~l~ 452 (1081)
T KOG0618|consen 393 NR---LNSFPASKLRKLEELEELNLSG----NKLTTLPDTVANL-GRLHTLRAHSNQLLSFP------------ELAQLP 452 (1081)
T ss_pred cc---cccCCHHHHhchHHhHHHhccc----chhhhhhHHHHhh-hhhHHHhhcCCceeech------------hhhhcC
Confidence 94 44444 5678888899999985 4555554434444 56666666666553221 234566
Q ss_pred cccEEEEeeCCCCCceEEcCCc-cccccEeEEeecCC
Q 047903 347 NLKVLHLKSMLWLEEWTMGIGA-MPKLECLIINPCAY 382 (430)
Q Consensus 347 ~L~~L~l~~~~~l~~~~~~~~~-~~~L~~L~l~~c~~ 382 (430)
+|+.++++. +++..+...... .|+|++|++++++.
T Consensus 453 qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 453 QLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 666666664 555554333222 25666666666654
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=6.5e-12 Score=131.17 Aligned_cols=187 Identities=20% Similarity=0.125 Sum_probs=137.7
Q ss_pred ccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCC--CcccChHhhhcCCCccEEecCCC-Cccccchhhc
Q 047903 134 HLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPS--LKSLPSPLLSNLLNLYTLDMPFS-YIDHTADEFW 209 (430)
Q Consensus 134 ~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~--i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~ 209 (430)
.++.. ....| .+.+-+|.+..++.... .+.|+.|-+.+|. +..++..+|..++.|++|||++| .+..+|..|+
T Consensus 516 ~~~~~~~~~~r--r~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 516 IPQVKSWNSVR--RMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred cccccchhhee--EEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence 44444 56667 77777788777776543 3479999999987 78888888899999999999999 8999999999
Q ss_pred cCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCC
Q 047903 210 KMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCL 286 (430)
Q Consensus 210 ~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 286 (430)
+|.+||+|+++++.+.. +| +++..|..|++.........+.. ...+++|+.|.+..............+..+++|
T Consensus 593 ~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred hhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 99999999999999998 99 56666666666655543333444 666999999999876423444555667888888
Q ss_pred CEEEEecCC----C---------------C---CCceEEEEEcccccCCcceEEEEccccCC
Q 047903 287 ESLKLVSES----K---------------M---PTLSKIVLVEYQFPPRLTHLSFSNTELME 326 (430)
Q Consensus 287 ~~L~l~~~~----~---------------~---~~L~~L~l~~~~lp~~L~~L~L~~~~l~~ 326 (430)
+.+.....+ + . ...+.+...+..+ .+|+.|.+.+|...+
T Consensus 671 ~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 671 ENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL-GNLEELSILDCGISE 731 (889)
T ss_pred hhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccc-cCcceEEEEcCCCch
Confidence 888776511 1 0 1222222245677 899999999998754
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=4.8e-13 Score=121.94 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=74.7
Q ss_pred CCCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCccccc-ccccccccCCceeecCC-CCCcccChHhhhcCCC
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNI-PSLKSLPSPLLSNLLN 190 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~-~~i~~lp~~i~~~L~~ 190 (430)
.+.....+.+. .+.+..+|+.. +++|| .|||+.|.|+.+ |++|.++..|..|-+.+ |+|+.+|...|++|..
T Consensus 65 LP~~tveirLd-qN~I~~iP~~aF~~l~~LR--rLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 65 LPPETVEIRLD-QNQISSIPPGAFKTLHRLR--RLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred CCCcceEEEec-cCCcccCChhhccchhhhc--eecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 45566677777 66666666665 55566 777777777744 46777777776666555 6777777777777777
Q ss_pred ccEEecCCCCccccchh-hccCcccceeecCCcccCCCcC
Q 047903 191 LYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR 229 (430)
Q Consensus 191 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp 229 (430)
|+-|.+.-|++.-++.. +..|++|..|.+..|.+.. ++
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~ 180 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-IC 180 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh-hc
Confidence 77777777766655443 6677777777666666555 44
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=1.2e-12 Score=123.67 Aligned_cols=140 Identities=19% Similarity=0.103 Sum_probs=74.4
Q ss_pred cCCC-CCCceEEEEccccc--cHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-----EcccccCCcceEEEEccccC
Q 047903 254 LGRL-PNLRNLRIWGDLSY--YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-----VEYQFPPRLTHLSFSNTELM 325 (430)
Q Consensus 254 l~~l-~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~ 325 (430)
+..+ ++|++|++.++.-. ....+...+..+++|+.|++++ ..+..-.+ .+... ++|+.|++++|.+.
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~----n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~ 206 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN----NGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLT 206 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC----CCCchHHHHHHHHHHHhC-CCCCEEeccCCccC
Confidence 4555 67777777777511 1223445566666777777764 11221000 12233 57788888777654
Q ss_pred CcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc--CC----ccccccEeEEeecCCC----CcCCCCCCCCCC
Q 047903 326 EDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG--IG----AMPKLECLIINPCAYL----KKMPEQPWCIKS 395 (430)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~----~~~~L~~L~l~~c~~l----~~lp~~l~~l~~ 395 (430)
.... ..+......+++|+.|+++++ .+...... .. ..+.|++|++.+|... ..++..+..+++
T Consensus 207 ~~~~------~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 207 DEGA------SALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred hHHH------HHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 3210 000111234677888888774 33321100 01 1367888888887522 123334455678
Q ss_pred CCEEEEecCh
Q 047903 396 LNKFNCWWPQ 405 (430)
Q Consensus 396 L~~L~l~~~~ 405 (430)
|+++++++|.
T Consensus 280 L~~l~l~~N~ 289 (319)
T cd00116 280 LLELDLRGNK 289 (319)
T ss_pred ccEEECCCCC
Confidence 8888888876
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=2.8e-12 Score=121.29 Aligned_cols=252 Identities=16% Similarity=0.062 Sum_probs=145.4
Q ss_pred cCcceEEEEEecCCccc-----ccccccccccCCceeecCCCCCcc-------cChHhhhcCCCccEEecCCCCcc-ccc
Q 047903 139 DSHMHSLVLDLGSLVLI-----HYLSGIENLFLLRYLKLNIPSLKS-------LPSPLLSNLLNLYTLDMPFSYID-HTA 205 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~~L~~L~~L~L~~~~l~-~lp 205 (430)
..+++ +++++++.++ .++..+...+.|++|+++++.+.. ++..+ .++++|+.|++++|.+. ..+
T Consensus 22 l~~L~--~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 22 LLCLQ--VLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred Hhhcc--EEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCChhHH
Confidence 34455 7777777763 344555566667777777766542 22334 67777777777777655 344
Q ss_pred hhhccCcc---cceeecCCcccCCC----cC---ccC-CCCcccceeecCCCCc----chhhhcCCCCCCceEEEEcccc
Q 047903 206 DEFWKMNN---LRHLNFGSITLPAH----PR---KYC-RSLENLNFISALHPCC----CTEDILGRLPNLRNLRIWGDLS 270 (430)
Q Consensus 206 ~~i~~L~~---L~~L~l~~~~~~~~----lp---~~l-~~L~~L~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~ 270 (430)
..+..+.+ |++|++++|.+... +. ..+ ++|+.|.+.++..... .... +..+++|++|++.++.-
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 44544444 77777777776631 11 333 5666666666553311 2233 66677888888888761
Q ss_pred c--cHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-----EcccccCCcceEEEEccccCCcccccccCCCeEEEcCC
Q 047903 271 Y--YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-----VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSD 343 (430)
Q Consensus 271 ~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~ 343 (430)
. ....++..+...++|+.|++++ + .+..... .+..+ ++|++|++++|.+......... ..+ ..
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~---n-~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l~--~~~---~~ 247 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNN---N-GLTDEGASALAETLASL-KSLEVLNLGDNNLTDAGAAALA--SAL---LS 247 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccC---C-ccChHHHHHHHHHhccc-CCCCEEecCCCcCchHHHHHHH--HHH---hc
Confidence 1 1123445566667888888886 2 1211110 23456 8899999999876542110000 000 01
Q ss_pred CCCcccEEEEeeCCCCCc-----eEEcCCccccccEeEEeecCCCCc----CCCCCCCC-CCCCEEEEecCh
Q 047903 344 GFPNLKVLHLKSMLWLEE-----WTMGIGAMPKLECLIINPCAYLKK----MPEQPWCI-KSLNKFNCWWPQ 405 (430)
Q Consensus 344 ~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~----lp~~l~~l-~~L~~L~l~~~~ 405 (430)
..++|++|++.++. +.. +......+++|+.+++++|.--.. +...+... +.|+++++.++|
T Consensus 248 ~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 248 PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 34789999998853 331 111223467899999998763322 23334444 678888877665
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=3e-12 Score=121.93 Aligned_cols=170 Identities=22% Similarity=0.238 Sum_probs=110.9
Q ss_pred EEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903 122 RINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS 199 (430)
Q Consensus 122 ~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~ 199 (430)
...++ .+....+++.+ +..|. .+.+..|.+..+|..++++..|.+|+|+.|++..+|..+ +.|+ |+.|.+++|
T Consensus 79 ~aDls-rNR~~elp~~~~~f~~Le--~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLS-RNRFSELPEEACAFVSLE--SLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVSNN 153 (722)
T ss_pred hhhcc-ccccccCchHHHHHHHHH--HHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEecC
Confidence 33444 44444455555 66666 666777777778888888888888888888888888877 7776 788888888
Q ss_pred CccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHH
Q 047903 200 YIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQS 279 (430)
Q Consensus 200 ~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 279 (430)
+++.+|.+++.++.|.+||.+.|.+.. +| .. ++.+.+|+.|.+..+ ....+|..
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~s-lp---------------------sq-l~~l~slr~l~vrRn---~l~~lp~E 207 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQS-LP---------------------SQ-LGYLTSLRDLNVRRN---HLEDLPEE 207 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhh-ch---------------------HH-hhhHHHHHHHHHhhh---hhhhCCHH
Confidence 888888888877788888888887766 44 33 455555555555544 33444444
Q ss_pred hcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcc
Q 047903 280 LCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDP 328 (430)
Q Consensus 280 l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~ 328 (430)
+..+ .|..|+++ |+++..+++.|..+ ++|++|.|.+|.+...|
T Consensus 208 l~~L-pLi~lDfS----cNkis~iPv~fr~m-~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 208 LCSL-PLIRLDFS----CNKISYLPVDFRKM-RHLQVLQLENNPLQSPP 250 (722)
T ss_pred HhCC-ceeeeecc----cCceeecchhhhhh-hhheeeeeccCCCCCCh
Confidence 4433 35555555 55566665555566 66666666666665554
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=7e-11 Score=99.66 Aligned_cols=105 Identities=24% Similarity=0.276 Sum_probs=34.4
Q ss_pred cCcceEEEEEecCCcccccccccc-cccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhh-ccCcccce
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIE-NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEF-WKMNNLRH 216 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~ 216 (430)
..+++ .|+|+||.++.+. .++ .+.+|+.|++++|.|++++ .+ ..+++|++|++++|.|+.++..+ ..+++|++
T Consensus 18 ~~~~~--~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLR--ELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccc--ccccccccccccc-chhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 44556 7777888777653 344 5677888888888888774 45 77888888888888888776555 35788888
Q ss_pred eecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 217 LNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 217 L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
|++++|++.. + ..+.. ++.+++|+.|++.+|.
T Consensus 93 L~L~~N~I~~-l-------------------~~l~~-L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 93 LYLSNNKISD-L-------------------NELEP-LSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EE-TTS---S-C-------------------CCCGG-GGG-TT--EEE-TT-G
T ss_pred EECcCCcCCC-h-------------------HHhHH-HHcCCCcceeeccCCc
Confidence 8888887765 1 12233 5556666666666664
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.4e-11 Score=113.99 Aligned_cols=212 Identities=20% Similarity=0.150 Sum_probs=142.2
Q ss_pred ccccccccccCCceeecCCCCCcccCh--HhhhcCCCccEEecCCCC---ccccchhhccCcccceeecCCcccCCCcC-
Q 047903 156 HYLSGIENLFLLRYLKLNIPSLKSLPS--PLLSNLLNLYTLDMPFSY---IDHTADEFWKMNNLRHLNFGSITLPAHPR- 229 (430)
Q Consensus 156 ~lp~~~~~l~~L~~L~L~~~~i~~lp~--~i~~~L~~L~~L~L~~~~---l~~lp~~i~~L~~L~~L~l~~~~~~~~lp- 229 (430)
++...-+++++|+...|.++.+...+. .. ..|++++.|||++|- ...+-....+|++|+.|+++.|++.....
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHHhhhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 344444678889999999888876653 55 789999999999883 33444556789999999999998875322
Q ss_pred ---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-
Q 047903 230 ---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL- 305 (430)
Q Consensus 230 ---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l- 305 (430)
..++.|+.|.+..|+.+...+...+..+++|..|.+..|. ...........+..|+.|+|++ +++-.++.
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~----N~li~~~~~ 264 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSN----NNLIDFDQG 264 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccC----Ccccccccc
Confidence 5677888888888886666665546778889999988885 2222223334456788888875 33333332
Q ss_pred -EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcC--CccccccEeEEeec
Q 047903 306 -VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGI--GAMPKLECLIINPC 380 (430)
Q Consensus 306 -~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~c 380 (430)
..+++ +.|+.|+++.|.+.......+.... -...|++|++|++.. ++..+|+.-. ..+++|+.|.+..+
T Consensus 265 ~~~~~l-~~L~~Lnls~tgi~si~~~d~~s~~----kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 265 YKVGTL-PGLNQLNLSSTGIASIAEPDVESLD----KTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccc-cchhhhhccccCcchhcCCCccchh----hhcccccceeeeccc-Cccccccccchhhccchhhhhhcccc
Confidence 45677 8899999999887653211111111 135689999999987 5566664432 34667777776543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=3.5e-10 Score=95.43 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L 194 (430)
+.+.|.|++. ++.+..+..-- +.+|+ +|++++|.++.+. .+..+++|+.|++++|.|+++++.+...+++|+.|
T Consensus 18 ~~~~~~L~L~-~n~I~~Ie~L~~~l~~L~--~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLR-GNQISTIENLGATLDKLE--VLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT----EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccc-ccccccccchhhhhcCCC--EEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 4567899999 77777554321 67888 9999999999885 57889999999999999999977663579999999
Q ss_pred ecCCCCccccch--hhccCcccceeecCCcccCCCcC-------ccCCCCcccceeecCC
Q 047903 195 DMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPAHPR-------KYCRSLENLNFISALH 245 (430)
Q Consensus 195 ~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp-------~~l~~L~~L~~~~~~~ 245 (430)
++++|+|..+.. .++.+++|++|++.+|.+.. -+ ..+++|+.|+...+..
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETTS
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEccH
Confidence 999998876643 37889999999999999887 34 5677777777666653
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=6.5e-10 Score=77.14 Aligned_cols=60 Identities=32% Similarity=0.399 Sum_probs=42.6
Q ss_pred cCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903 165 FLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL 224 (430)
Q Consensus 165 ~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 224 (430)
++|++|++++|+++.+|+..|.++++|++|++++|.++.+|.+ +.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777777766667777777777777777777653 67777777777777753
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.85 E-value=2.4e-09 Score=104.35 Aligned_cols=173 Identities=26% Similarity=0.307 Sum_probs=128.1
Q ss_pred cCcceEEEEEecCCccccccccccccc-CCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCccccee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLF-LLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHL 217 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 217 (430)
.+.++ .|++.++.++.++.....+. +|+.|++++|++..+|..+ +.+++|+.|++++|++.++|...+.++.|+.|
T Consensus 115 ~~~l~--~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLT--SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccee--EEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 45566 89999999999998888885 9999999999999998788 99999999999999999999877789999999
Q ss_pred ecCCcccCCCcCc---cCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecC
Q 047903 218 NFGSITLPAHPRK---YCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSE 294 (430)
Q Consensus 218 ~l~~~~~~~~lp~---~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 294 (430)
++++|.+.. +|. ....|+.+...... ....+.. +..+.++..|.+.++. ...++..+..+.+++.|+++.
T Consensus 192 ~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~---~~~~~~~~~~l~~l~~L~~s~- 264 (394)
T COG4886 192 DLSGNKISD-LPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNK---LEDLPESIGNLSNLETLDLSN- 264 (394)
T ss_pred eccCCcccc-CchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCce---eeeccchhccccccceecccc-
Confidence 999999998 882 44447777666553 1234444 6677777777766553 222245666777777777773
Q ss_pred CCCCCceEEEEEcccccCCcceEEEEccccCC
Q 047903 295 SKMPTLSKIVLVEYQFPPRLTHLSFSNTELME 326 (430)
Q Consensus 295 ~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~ 326 (430)
..+..++ .+..+ .+++.|+++++.+..
T Consensus 265 ---n~i~~i~-~~~~~-~~l~~L~~s~n~~~~ 291 (394)
T COG4886 265 ---NQISSIS-SLGSL-TNLRELDLSGNSLSN 291 (394)
T ss_pred ---ccccccc-ccccc-CccCEEeccCccccc
Confidence 3444443 24555 778888888776644
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=5.4e-09 Score=72.47 Aligned_cols=60 Identities=32% Similarity=0.369 Sum_probs=54.3
Q ss_pred CcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCc
Q 047903 140 SHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYI 201 (430)
Q Consensus 140 ~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 201 (430)
++|+ +|++++|.++.+| ..|.++++|++|++++|.++.+|+..|.++++|++|++++|++
T Consensus 1 p~L~--~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLE--SLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTES--EEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCc--EEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567 8999999999998 5889999999999999999999877779999999999999964
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=9.3e-09 Score=100.24 Aligned_cols=165 Identities=25% Similarity=0.256 Sum_probs=132.3
Q ss_pred CCeeEEEEeecCCCccccccc--cC-cceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903 118 KNVKRINVFEKQSDFAHLDDY--DS-HMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~~~~~~~--~~-~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L 194 (430)
..+..+.+. ++.+..++... .. +|+ .|++++|.+..+|..++.+++|+.|+++.|+++++|... +.+++|+.|
T Consensus 116 ~~l~~L~l~-~n~i~~i~~~~~~~~~nL~--~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLD-NNNITDIPPLIGLLKSNLK--ELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNL 191 (394)
T ss_pred cceeEEecC-CcccccCccccccchhhcc--cccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhhhhe
Confidence 468888888 77777777766 43 899 999999999999988999999999999999999999887 799999999
Q ss_pred ecCCCCccccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccc
Q 047903 195 DMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSY 271 (430)
Q Consensus 195 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 271 (430)
++++|++..+|..+.....|++|.+++|.... ++ ..+.++..+....... ...+.. ++.+++++.|+++++.
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~-~~~~~~-~~~l~~l~~L~~s~n~-- 266 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKL-EDLPES-IGNLSNLETLDLSNNQ-- 266 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCcee-eeccch-hccccccceecccccc--
Confidence 99999999999987788889999999996554 44 5566666555222211 112455 8889999999999985
Q ss_pred cHHHHHHHhcCCCCCCEEEEec
Q 047903 272 YQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 272 ~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
...++. +..+.+++.|++++
T Consensus 267 -i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 267 -ISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred -cccccc-ccccCccCEEeccC
Confidence 333333 77888999999875
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=8.1e-10 Score=105.64 Aligned_cols=211 Identities=19% Similarity=0.199 Sum_probs=130.0
Q ss_pred EEEecCCccccccc-ccc-cccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcc
Q 047903 146 VLDLGSLVLIHYLS-GIE-NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSIT 223 (430)
Q Consensus 146 ~L~l~~~~l~~lp~-~~~-~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 223 (430)
+|.|++-.+..+|. ... .+.--...+++.|++.++|..+ +.+..|+.+.|..|.+..+|..+.++..|.++|++.|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 44555555555552 222 3344445666666666666666 66666777777666666666666677777777777666
Q ss_pred cCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCce
Q 047903 224 LPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLS 301 (430)
Q Consensus 224 ~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~ 301 (430)
+.. +| -..--|+.|-... ++....+.+ ++.+..|..|+.+.| ....+++.++.+.+|+.|.++. +++.
T Consensus 133 lS~-lp~~lC~lpLkvli~sN-Nkl~~lp~~-ig~~~tl~~ld~s~n---ei~slpsql~~l~slr~l~vrR----n~l~ 202 (722)
T KOG0532|consen 133 LSH-LPDGLCDLPLKVLIVSN-NKLTSLPEE-IGLLPTLAHLDVSKN---EIQSLPSQLGYLTSLRDLNVRR----NHLE 202 (722)
T ss_pred hhc-CChhhhcCcceeEEEec-CccccCCcc-cccchhHHHhhhhhh---hhhhchHHhhhHHHHHHHHHhh----hhhh
Confidence 666 55 1122233332222 223345666 787888899999988 5778888888998998888873 3444
Q ss_pred EEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc---CCccccccEeEEe
Q 047903 302 KIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG---IGAMPKLECLIIN 378 (430)
Q Consensus 302 ~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~L~~L~l~ 378 (430)
+|.-....| .|..||++.|++... +.....+..|++|.+.+ +-+++-|.. .|...=-++|++.
T Consensus 203 ~lp~El~~L--pLi~lDfScNkis~i-----------Pv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 203 DLPEELCSL--PLIRLDFSCNKISYL-----------PVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred hCCHHHhCC--ceeeeecccCceeec-----------chhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecch
Confidence 432122223 478888888877543 34456677888888886 445554433 2344445677777
Q ss_pred ecC
Q 047903 379 PCA 381 (430)
Q Consensus 379 ~c~ 381 (430)
.|.
T Consensus 269 A~q 271 (722)
T KOG0532|consen 269 ACQ 271 (722)
T ss_pred hcc
Confidence 773
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=3.7e-09 Score=93.68 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=59.5
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP 225 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 225 (430)
.+|+++|.++.+-.++.-++.+|.|+++.|++..+.. + ..|++|+.|||++|.+..+-..=.+|-+.++|.+++|.+.
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-L-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-L-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEeccccceeeehh-h-hhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 5566666655555555555556666666666555532 4 5556666666666555554443344555555555555554
Q ss_pred CCcC--ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccc
Q 047903 226 AHPR--KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 226 ~~lp--~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
. +. +++-+|..|+..++.. ....++. +++++.|+.+.+.+|.
T Consensus 366 ~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 366 T-LSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred h-hhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC
Confidence 4 32 2333333333333221 1223333 4555555555544443
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=8.7e-08 Score=98.24 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=61.6
Q ss_pred EEEecCCccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCCCccEEecCCCCcc-ccchhhccCcccceeecCCc
Q 047903 146 VLDLGSLVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLYTLDMPFSYID-HTADEFWKMNNLRHLNFGSI 222 (430)
Q Consensus 146 ~L~l~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~ 222 (430)
.|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..+ +++++|+.|+|++|++. .+|..++++++|++|++++|
T Consensus 422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 6777777766 66677777777777777777776 667666 77777777777777666 56777777777777777777
Q ss_pred ccCCCcC
Q 047903 223 TLPAHPR 229 (430)
Q Consensus 223 ~~~~~lp 229 (430)
.+.+.+|
T Consensus 501 ~l~g~iP 507 (623)
T PLN03150 501 SLSGRVP 507 (623)
T ss_pred cccccCC
Confidence 7776666
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.4e-08 Score=94.38 Aligned_cols=149 Identities=17% Similarity=0.097 Sum_probs=96.8
Q ss_pred CCCCeeEEEEeecCCCccccc--cc--cCcceEEEEEecCCccccc---ccccccccCCceeecCCCCCcccCh--Hhhh
Q 047903 116 SRKNVKRINVFEKQSDFAHLD--DY--DSHMHSLVLDLGSLVLIHY---LSGIENLFLLRYLKLNIPSLKSLPS--PLLS 186 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~--~~--~~~L~~L~L~l~~~~l~~l---p~~~~~l~~L~~L~L~~~~i~~lp~--~i~~ 186 (430)
..+++|.+++. +........ -. ++++| .|||++|-+... -.....|++|+.|+++.|.+..... .- .
T Consensus 119 n~kkL~~IsLd-n~~V~~~~~~~~~k~~~~v~--~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~ 194 (505)
T KOG3207|consen 119 NLKKLREISLD-NYRVEDAGIEEYSKILPNVR--DLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-L 194 (505)
T ss_pred hHHhhhheeec-CccccccchhhhhhhCCcce--eecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-h
Confidence 35568888888 777664442 22 88888 888888876632 2344578888888888888664321 12 4
Q ss_pred cCCCccEEecCCCCcc--ccchhhccCcccceeecCCcccCC--CcC-ccCCCCcccceeecCC-CCcchhhhcCCCCCC
Q 047903 187 NLLNLYTLDMPFSYID--HTADEFWKMNNLRHLNFGSITLPA--HPR-KYCRSLENLNFISALH-PCCCTEDILGRLPNL 260 (430)
Q Consensus 187 ~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~--~lp-~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L 260 (430)
.+++|+.|.|++|.+. .+-.....+|+|+.|++.+|.... ..+ ..+..|+.|++.++.. ....... .+.++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~-~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK-VGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc-cccccch
Confidence 5788888888888766 344445678888888888884221 022 5556666666665553 2223333 5677777
Q ss_pred ceEEEEccc
Q 047903 261 RNLRIWGDL 269 (430)
Q Consensus 261 ~~L~l~~~~ 269 (430)
+.|+++.++
T Consensus 274 ~~Lnls~tg 282 (505)
T KOG3207|consen 274 NQLNLSSTG 282 (505)
T ss_pred hhhhccccC
Confidence 777777665
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=8e-09 Score=91.57 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=103.9
Q ss_pred CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L 194 (430)
++.+..+.++ .+.+..+.+++ .+++| +|++++|.+..+-. +..+++|..|||++|.++++-.-- .+|-|.++|
T Consensus 283 Wq~LtelDLS-~N~I~~iDESvKL~Pkir--~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLS-GNLITQIDESVKLAPKLR--RLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWH-LKLGNIKTL 357 (490)
T ss_pred Hhhhhhcccc-ccchhhhhhhhhhcccee--EEeccccceeeehh-hhhcccceEeecccchhHhhhhhH-hhhcCEeee
Confidence 4567888888 77777788887 99999 99999999886644 889999999999999999885444 789999999
Q ss_pred ecCCCCccccchhhccCcccceeecCCcccCCCcC-----ccCCCCcccceeecCC
Q 047903 195 DMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-----KYCRSLENLNFISALH 245 (430)
Q Consensus 195 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-----~~l~~L~~L~~~~~~~ 245 (430)
.|.+|.+..+.. +++|-+|..||+++|++.. +. ++++.|+.+.+.++..
T Consensus 358 ~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIETLSG-LRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhhhhh-hHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCc
Confidence 999999888865 8999999999999999987 54 8899999988877763
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.45 E-value=1.4e-08 Score=93.94 Aligned_cols=262 Identities=18% Similarity=0.131 Sum_probs=151.0
Q ss_pred cCcceEEEEEecCCc-cccc-ccccc-cccCCceeecCCCC-Cccc-ChHhhhcCCCccEEecCCC-Cccc--cchhhcc
Q 047903 139 DSHMHSLVLDLGSLV-LIHY-LSGIE-NLFLLRYLKLNIPS-LKSL-PSPLLSNLLNLYTLDMPFS-YIDH--TADEFWK 210 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~-l~~l-p~~~~-~l~~L~~L~L~~~~-i~~l-p~~i~~~L~~L~~L~L~~~-~l~~--lp~~i~~ 210 (430)
++++. .|++.+|. ++.. -.+++ .+.+|++|++..|. ++.. -..+-..+++|++++++|| .+.. +..-..+
T Consensus 163 CpnIe--hL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 163 CPNIE--HLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred CCchh--hhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 66666 55666665 3311 12333 56777788777743 5532 1212266778888888887 5543 2222445
Q ss_pred CcccceeecCCcccCCCcC------ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCC
Q 047903 211 MNNLRHLNFGSITLPAHPR------KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTL 283 (430)
Q Consensus 211 L~~L~~L~l~~~~~~~~lp------~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 283 (430)
...++.+.+.||.-.+ .. +....+.++++..|.. +......+-.....|+.|+.+++.......+.+--.+.
T Consensus 241 ~~~l~~~~~kGC~e~~-le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELE-LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred chhhhhhhhccccccc-HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 5556666555543322 11 2333333344334432 22222221344567778887777643333333444456
Q ss_pred CCCCEEEEecCCCCCCceEEEE-Ecc-cccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCc
Q 047903 284 TCLESLKLVSESKMPTLSKIVL-VEY-QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEE 361 (430)
Q Consensus 284 ~~L~~L~l~~~~~~~~L~~L~l-~~~-~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 361 (430)
.+|+.|.+.. |..+..... .++ +- +.|+.+++..|....+. .+.......+.|+.|.+++|.....
T Consensus 320 ~~L~~l~l~~---c~~fsd~~ft~l~rn~-~~Le~l~~e~~~~~~d~--------tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 320 HNLQVLELSG---CQQFSDRGFTMLGRNC-PHLERLDLEECGLITDG--------TLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred CceEEEeccc---cchhhhhhhhhhhcCC-hhhhhhcccccceehhh--------hHhhhccCCchhccCChhhhhhhhh
Confidence 7777777776 444333321 111 33 78889988888654321 1222345788999999998765543
Q ss_pred e-----EEcCCccccccEeEEeecCCCCc-CCCCCCCCCCCCEEEEecChHHHHHHhhhc
Q 047903 362 W-----TMGIGAMPKLECLIINPCAYLKK-MPEQPWCIKSLNKFNCWWPQLELRQKLREF 415 (430)
Q Consensus 362 ~-----~~~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 415 (430)
- .....++..|+.+++.+|+.+++ .-+.+...++|+.+++.+|.....+.++..
T Consensus 388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 388 EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF 447 (483)
T ss_pred hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH
Confidence 3 22234678899999999997765 234566788999999999996666666653
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.5e-08 Score=89.88 Aligned_cols=103 Identities=20% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCceeecCCCCCc--ccChHhhhcCCCccEEecCCCCcc-ccchhhccCcccceeecCCcccCCCc--C---ccCCCCcc
Q 047903 166 LLRYLKLNIPSLK--SLPSPLLSNLLNLYTLDMPFSYID-HTADEFWKMNNLRHLNFGSITLPAHP--R---KYCRSLEN 237 (430)
Q Consensus 166 ~L~~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~l--p---~~l~~L~~ 237 (430)
.|++|||+...|+ .+.- +++.+.+|+.|.+.++.+. .+-..+.+-.+|+.|+++.+.-...- . .+++.|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~-iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHG-ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHH-HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4667777766655 3322 2366677777777666554 34445666666777766665433211 1 34444444
Q ss_pred cceeecCCCCcchhhhcCC-CCCCceEEEEccc
Q 047903 238 LNFISALHPCCCTEDILGR-LPNLRNLRIWGDL 269 (430)
Q Consensus 238 L~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 269 (430)
|.+..|......+..++.+ -++|+.|+++++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 4444444322222221222 2456666666654
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3e-08 Score=87.95 Aligned_cols=182 Identities=19% Similarity=0.170 Sum_probs=100.1
Q ss_pred CccEEecCCCCcc--ccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEc
Q 047903 190 NLYTLDMPFSYID--HTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWG 267 (430)
Q Consensus 190 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 267 (430)
.||+|||+...|+ .+..-+..+.+|+.|.+.|+.+.. ..... +++=.+|+.|+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD---------------------~I~~~-iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD---------------------PIVNT-IAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc---------------------HHHHH-Hhccccceeecccc
Confidence 3777777776555 334446677777777777666665 33444 55566677777776
Q ss_pred cccccHHHHHHHhcCCCCCCEEEEecCCCC-CCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCC
Q 047903 268 DLSYYQSLLSQSLCTLTCLESLKLVSESKM-PTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFP 346 (430)
Q Consensus 268 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (430)
+......+.-..+..++.|..|+|+|++.. +..+. .+.+..++|+.|+|++|.-.-. ...+..-....|
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~-------~sh~~tL~~rcp 313 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQ-------KSHLSTLVRRCP 313 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhh-------hhHHHHHHHhCC
Confidence 653333333444556666777777762211 01111 2233336677777777642100 000111124567
Q ss_pred cccEEEEeeCCCCCce-EEcCCccccccEeEEeecCCCCcCCC---CCCCCCCCCEEEEecCh
Q 047903 347 NLKVLHLKSMLWLEEW-TMGIGAMPKLECLIINPCAYLKKMPE---QPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 347 ~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~~~ 405 (430)
+|.+|+++++..++.- ......|+.|++|.++.|-.+ .|. .+...|+|.+|++.||-
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 7777777776555431 111235777777777777533 222 34566777777777765
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.38 E-value=3.8e-07 Score=58.02 Aligned_cols=41 Identities=34% Similarity=0.361 Sum_probs=28.1
Q ss_pred cCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch
Q 047903 165 FLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD 206 (430)
Q Consensus 165 ~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~ 206 (430)
++|++|++++|+|+++|+.+ ++|++|++|++++|.++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCcC
Confidence 35777777777777777666 777777777777777766653
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.35 E-value=2e-07 Score=84.51 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=59.2
Q ss_pred cCcceEEEEEecCCccc-----ccccccccccCCceeecCCC--C--CcccChHh------hhcCCCccEEecCCCCcc-
Q 047903 139 DSHMHSLVLDLGSLVLI-----HYLSGIENLFLLRYLKLNIP--S--LKSLPSPL------LSNLLNLYTLDMPFSYID- 202 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~-----~lp~~~~~l~~L~~L~L~~~--~--i~~lp~~i------~~~L~~L~~L~L~~~~l~- 202 (430)
...++ .++++||.+. .+-..+.+.++||.-+++.- + ..++|+.+ +..+++|++|+||+|.+.
T Consensus 29 ~~s~~--~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 29 MDSLT--KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cCceE--EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 55566 8999999976 34456777888999888862 1 22455432 256778999999999443
Q ss_pred ccch----hhccCcccceeecCCcccCC
Q 047903 203 HTAD----EFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 203 ~lp~----~i~~L~~L~~L~l~~~~~~~ 226 (430)
.-++ -+..+..|++|.|.+|-+..
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGP 134 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence 2222 26778889999888887654
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1.3e-06 Score=89.58 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=85.7
Q ss_pred eeEEEEeecCCCc-cccccc--cCcceEEEEEecCCccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCCCccEE
Q 047903 120 VKRINVFEKQSDF-AHLDDY--DSHMHSLVLDLGSLVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLYTL 194 (430)
Q Consensus 120 ~r~L~l~~~~~~~-~~~~~~--~~~L~~L~L~l~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~~L 194 (430)
++.|.+. ++... .++..+ +++|+ .|+|++|.+. .+|..++.+++|++|+|++|++. .+|..+ +++++|++|
T Consensus 420 v~~L~L~-~n~L~g~ip~~i~~L~~L~--~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLD-NQGLRGFIPNDISKLRHLQ--SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRIL 495 (623)
T ss_pred EEEEECC-CCCccccCCHHHhCCCCCC--EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEE
Confidence 6777777 55443 456666 88888 9999999997 88889999999999999999998 678888 999999999
Q ss_pred ecCCCCcc-ccchhhccC-cccceeecCCcccCC
Q 047903 195 DMPFSYID-HTADEFWKM-NNLRHLNFGSITLPA 226 (430)
Q Consensus 195 ~L~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~~~ 226 (430)
+|++|.+. .+|..++.+ .++..+++.+|....
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 99999877 889887764 467788888886544
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.4e-06 Score=55.40 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=34.1
Q ss_pred CCccEEecCCCCccccchhhccCcccceeecCCcccCC
Q 047903 189 LNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 189 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 226 (430)
++|++|++++|+++.+|..+++|++|++|++++|.+..
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999999999999999999999999886
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=1.1e-06 Score=79.87 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=54.1
Q ss_pred hcCCCCCCceEEEEccc--cccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE------EcccccCCcceEEEEcccc
Q 047903 253 ILGRLPNLRNLRIWGDL--SYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL------VEYQFPPRLTHLSFSNTEL 324 (430)
Q Consensus 253 ~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l------~~~~lp~~L~~L~L~~~~l 324 (430)
++..+++|+.|++.+|. ..-...+...+..+++|+.|++++ |. ++.=-. .-... |+|+.|.+.+|.+
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d---cl-l~~~Ga~a~~~al~~~~-p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD---CL-LENEGAIAFVDALKESA-PSLEVLELAGNEI 282 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc---cc-cccccHHHHHHHHhccC-CCCceeccCcchh
Confidence 37888999999999987 222334556777888899888886 11 000000 00123 7777888777776
Q ss_pred CCcccccccCCCeEEEcCCCCCcccEEEEee
Q 047903 325 MEDPKSRASSSRKLTCGSDGFPNLKVLHLKS 355 (430)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 355 (430)
+.+.. ..+......-|.|+.|++++
T Consensus 283 t~da~------~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 283 TRDAA------LALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHH------HHHHHHHhcchhhHHhcCCc
Confidence 54321 00111123366777777776
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=1.1e-06 Score=78.16 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=54.0
Q ss_pred cccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc--CCccccccEeEEeecCCCCcC
Q 047903 309 QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG--IGAMPKLECLIINPCAYLKKM 386 (430)
Q Consensus 309 ~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~l 386 (430)
-+ |++..+-+..|.++... -.-....||.+..|++.. +++.+|... ...||.|..|.+.+.|....+
T Consensus 197 ~F-pnv~sv~v~e~PlK~~s---------~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IF-PNVNSVFVCEGPLKTES---------SEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hc-ccchheeeecCcccchh---------hcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 35 88888888888775432 112345688888888876 566666422 246999999999998866555
Q ss_pred CC------CCCCCCCCCEEEE
Q 047903 387 PE------QPWCIKSLNKFNC 401 (430)
Q Consensus 387 p~------~l~~l~~L~~L~l 401 (430)
-. -+.++++++.|+=
T Consensus 266 ~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 266 RGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred cCCcceEEEEeeccceEEecC
Confidence 32 2355666666643
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=1.6e-06 Score=68.44 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=60.9
Q ss_pred EEEecCCcccccccccc-cccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCccc
Q 047903 146 VLDLGSLVLIHYLSGIE-NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITL 224 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 224 (430)
..++++|.+.++|..|. .++..+.|++++|.|.++|.++ ..++.|+.|+++.|.+...|+-+..|.+|-.|+..+|..
T Consensus 57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred EEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 66777777777776655 4557777778777777777776 777888888888777777777777777777777777776
Q ss_pred CCCcC
Q 047903 225 PAHPR 229 (430)
Q Consensus 225 ~~~lp 229 (430)
.. +|
T Consensus 136 ~e-id 139 (177)
T KOG4579|consen 136 AE-ID 139 (177)
T ss_pred cc-Cc
Confidence 66 65
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.99 E-value=5.5e-07 Score=88.18 Aligned_cols=233 Identities=22% Similarity=0.250 Sum_probs=135.2
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP 225 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 225 (430)
.+.+..|.+..+-..+..+++|.+|++.+|+|..+...+ ..+++|++|++++|.|+.+.. +..++.|+.|++++|.+.
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLIS 153 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccchhhcccch-hhhhcchheeccccccccccc-hhhccchhhheeccCcch
Confidence 666777777776666888999999999999999886546 889999999999999988866 777888999999999988
Q ss_pred CCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEE
Q 047903 226 AHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKI 303 (430)
Q Consensus 226 ~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L 303 (430)
. ++ ..+.+|+.+.+.++......... +..+.+++.+.+.++.. ... ..+..+..+..+++.. ..+..+
T Consensus 154 ~-~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i--~~i--~~~~~~~~l~~~~l~~----n~i~~~ 223 (414)
T KOG0531|consen 154 D-ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI--REI--EGLDLLKKLVLLSLLD----NKISKL 223 (414)
T ss_pred h-ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch--hcc--cchHHHHHHHHhhccc----ccceec
Confidence 8 66 44666666666555431111100 14556667777776641 110 0111111111122221 122222
Q ss_pred EEEcccccCC--cceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecC
Q 047903 304 VLVEYQFPPR--LTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCA 381 (430)
Q Consensus 304 ~l~~~~lp~~--L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 381 (430)
. -+..+ .. |+.++++++++...+ .....++.+..|++.+ +....+.. ....+.+..+...+.+
T Consensus 224 ~-~l~~~-~~~~L~~l~l~~n~i~~~~-----------~~~~~~~~l~~l~~~~-n~~~~~~~-~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 224 E-GLNEL-VMLHLRELYLSGNRISRSP-----------EGLENLKNLPVLDLSS-NRISNLEG-LERLPKLSELWLNDNK 288 (414)
T ss_pred c-Ccccc-hhHHHHHHhcccCcccccc-----------ccccccccccccchhh-cccccccc-ccccchHHHhccCcch
Confidence 1 11122 22 788888888764321 1234566777777665 22222211 1123444444444433
Q ss_pred CC---CcCCC-CCCCCCCCCEEEEecCh
Q 047903 382 YL---KKMPE-QPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 382 ~l---~~lp~-~l~~l~~L~~L~l~~~~ 405 (430)
.. ..... .....+++..+.+.+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 289 LALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred hcchhhhhccccccccccccccccccCc
Confidence 22 11111 24556778888887777
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=1.1e-05 Score=76.58 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=87.0
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCC-CcccChHhhhcCCCccEEecCCC-CccccchhhccCcccce
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPS-LKSLPSPLLSNLLNLYTLDMPFS-YIDHTADEFWKMNNLRH 216 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~ 216 (430)
+.+++ .|++++|.++.+|. + -.+|+.|.+++|. ++.+|..+ ..+|++|++++| .+..+|.. |++
T Consensus 51 ~~~l~--~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 51 ARASG--RLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred hcCCC--EEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cce
Confidence 66777 88888888888872 2 2358888988754 67777655 358899999988 77777754 566
Q ss_pred eecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcC-CC-CCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecC
Q 047903 217 LNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILG-RL-PNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSE 294 (430)
Q Consensus 217 L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 294 (430)
|+++++.... ++.-.++|+.|.+..... ..... +. .+ ++|+.|.+.+|. .. .+|..+. .+|+.|+++.
T Consensus 117 L~L~~n~~~~-L~~LPssLk~L~I~~~n~--~~~~~-lp~~LPsSLk~L~Is~c~--~i-~LP~~LP--~SLk~L~ls~- 186 (426)
T PRK15386 117 LEIKGSATDS-IKNVPNGLTSLSINSYNP--ENQAR-IDNLISPSLKTLSLTGCS--NI-ILPEKLP--ESLQSITLHI- 186 (426)
T ss_pred EEeCCCCCcc-cccCcchHhheecccccc--ccccc-cccccCCcccEEEecCCC--cc-cCccccc--ccCcEEEecc-
Confidence 6666655433 222223344444322111 00011 11 12 568888888775 11 2222221 4677777653
Q ss_pred CCCCCceEEEEEcccccCCcceEEEEcc
Q 047903 295 SKMPTLSKIVLVEYQFPPRLTHLSFSNT 322 (430)
Q Consensus 295 ~~~~~L~~L~l~~~~lp~~L~~L~L~~~ 322 (430)
.....+.+....+|+++ .|++.+|
T Consensus 187 ---n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 187 ---EQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred ---cccccccCccccccccc-Eechhhh
Confidence 11122222223455556 6666655
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=1.2e-05 Score=82.72 Aligned_cols=83 Identities=20% Similarity=0.116 Sum_probs=43.2
Q ss_pred ccCcccceeecCCcccCCCcC--ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccc----cHHHHHHHhc
Q 047903 209 WKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSY----YQSLLSQSLC 281 (430)
Q Consensus 209 ~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~l~ 281 (430)
.++++|..||+|++.+.. +- +.+++|+.|.+.+... ......+ +..|++|+.|+++..... ......+.-.
T Consensus 170 ~sFpNL~sLDIS~TnI~n-l~GIS~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISN-LSGISRLKNLQVLSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred hccCccceeecCCCCccC-cHHHhccccHHHHhccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence 444445555555444444 33 4444444444444442 2244556 777888888888766511 1222333444
Q ss_pred CCCCCCEEEEec
Q 047903 282 TLTCLESLKLVS 293 (430)
Q Consensus 282 ~l~~L~~L~l~~ 293 (430)
.+++|+.|+.++
T Consensus 248 ~LpeLrfLDcSg 259 (699)
T KOG3665|consen 248 VLPELRFLDCSG 259 (699)
T ss_pred cCccccEEecCC
Confidence 566666666665
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=3.7e-06 Score=82.41 Aligned_cols=104 Identities=19% Similarity=0.299 Sum_probs=50.2
Q ss_pred CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L 194 (430)
..++..+.+. ++.+..+...+ +++|+ +|++++|.|+.+. .+..++.|+.|++++|.|+.+.. + ..+++|+.+
T Consensus 94 ~~~l~~l~l~-~n~i~~i~~~l~~~~~L~--~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~-~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLY-DNKIEKIENLLSSLVNLQ--VLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-L-ESLKSLKLL 167 (414)
T ss_pred ccceeeeecc-ccchhhcccchhhhhcch--heecccccccccc-chhhccchhhheeccCcchhccC-C-ccchhhhcc
Confidence 3445555555 44444333312 55555 5555555555442 23344445555555555555422 2 345555555
Q ss_pred ecCCCCccccchh-hccCcccceeecCCcccCC
Q 047903 195 DMPFSYIDHTADE-FWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 195 ~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 226 (430)
++++|.+..+... ...+.+++.+.+.+|.+..
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 5555555544432 3445555555555555443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=5.5e-07 Score=89.03 Aligned_cols=97 Identities=18% Similarity=0.193 Sum_probs=54.6
Q ss_pred CceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcC-ccCC--CCcccceeec
Q 047903 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KYCR--SLENLNFISA 243 (430)
Q Consensus 167 L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~--~L~~L~~~~~ 243 (430)
|.+.+.++|.+..+-.++ .-++.|+.|+|++|+++.+. .+..+++|+||||++|.+.. +| -.+. .|+.|.+.++
T Consensus 166 L~~a~fsyN~L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-ccccchhhhhheeeeeccc
Confidence 444555556665555555 66666777777777666665 36667777777777776666 66 1111 1444443332
Q ss_pred CCCCcchhhhcCCCCCCceEEEEccc
Q 047903 244 LHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 244 ~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
. .....+ +.++.+|+.|++++|-
T Consensus 243 ~--l~tL~g-ie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 243 A--LTTLRG-IENLKSLYGLDLSYNL 265 (1096)
T ss_pred H--HHhhhh-HHhhhhhhccchhHhh
Confidence 2 133444 5555666666666653
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=6.7e-06 Score=73.32 Aligned_cols=203 Identities=16% Similarity=0.156 Sum_probs=109.8
Q ss_pred cCcceEEEEEecCCcccccc---cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCcc--ccchhhccCcc
Q 047903 139 DSHMHSLVLDLGSLVLIHYL---SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYID--HTADEFWKMNN 213 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~--~lp~~i~~L~~ 213 (430)
+.+++ .+||.+|.++... ..+.+|+.|++|+++.|++..-..+.=..+.+|++|.|.++.+. .....+..+|.
T Consensus 70 ~~~v~--elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVK--ELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhh--hhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 67777 9999999987443 44568999999999999865321111035689999999988544 55556788999
Q ss_pred cceeecCCcccCCC-cC-----ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCC
Q 047903 214 LRHLNFGSITLPAH-PR-----KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCL 286 (430)
Q Consensus 214 L~~L~l~~~~~~~~-lp-----~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 286 (430)
++.|+++.|.+..- +. ..-+.+.+|....|.. ........-..++++..+-+..+. ............++.+
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcc
Confidence 99999999865541 11 2223444444444431 000111102334556555555552 0111112223333444
Q ss_pred CEEEEecCCCCCCceEEEE--EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEE
Q 047903 287 ESLKLVSESKMPTLSKIVL--VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353 (430)
Q Consensus 287 ~~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 353 (430)
.-|.|+. .++-+..- .+..+ +.|..|.++++.+.+.- ..++....-.+.+++++.|+=
T Consensus 227 ~~LnL~~----~~idswasvD~Ln~f-~~l~dlRv~~~Pl~d~l----~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 227 SCLNLGA----NNIDSWASVDALNGF-PQLVDLRVSENPLSDPL----RGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hhhhhcc----cccccHHHHHHHcCC-chhheeeccCCcccccc----cCCcceEEEEeeccceEEecC
Confidence 3444432 11111110 33466 77777777777654321 012222333445666666653
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.72 E-value=9.9e-07 Score=87.27 Aligned_cols=121 Identities=14% Similarity=0.084 Sum_probs=84.8
Q ss_pred CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChH-hhhcCCCcc
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSP-LLSNLLNLY 192 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~~L~~L~ 192 (430)
.+-++...++. .+....+.+++ ++.++ .|+|++|.+++.- .+..+++|++|||++|.+..+|.- . ..+. |+
T Consensus 162 ~Wn~L~~a~fs-yN~L~~mD~SLqll~ale--~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~-~gc~-L~ 235 (1096)
T KOG1859|consen 162 VWNKLATASFS-YNRLVLMDESLQLLPALE--SLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSM-VGCK-LQ 235 (1096)
T ss_pred hhhhHhhhhcc-hhhHHhHHHHHHHHHHhh--hhccchhhhhhhH-HHHhcccccccccccchhccccccch-hhhh-he
Confidence 34456666666 44444455555 77888 8889999888664 677888899999999988877632 2 3444 88
Q ss_pred EEecCCCCccccchhhccCcccceeecCCcccCCC---cC-ccCCCCcccceeec
Q 047903 193 TLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAH---PR-KYCRSLENLNFISA 243 (430)
Q Consensus 193 ~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~---lp-~~l~~L~~L~~~~~ 243 (430)
.|.+++|.++.+-. +.+|.+|+.||+++|-+.+. .| +.+..|..|.+-++
T Consensus 236 ~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 236 LLNLRNNALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred eeeecccHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 89999888887754 88888999999998887763 22 55555555555443
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.68 E-value=9e-06 Score=64.25 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=76.6
Q ss_pred CCeeEEEEeecCCCccccccc---cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903 118 KNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L 194 (430)
..+..++++ ++....+++.+ ++-++ .+++++|.++.+|..+..++.||.|+++.|.+...|.-+ ..|.+|-.|
T Consensus 53 ~el~~i~ls-~N~fk~fp~kft~kf~t~t--~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLS-DNGFKKFPKKFTIKFPTAT--TLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLDML 128 (177)
T ss_pred ceEEEEecc-cchhhhCCHHHhhccchhh--hhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHHHh
Confidence 346778888 88777788877 66778 999999999999988999999999999999999999988 779999999
Q ss_pred ecCCCCccccchhh
Q 047903 195 DMPFSYIDHTADEF 208 (430)
Q Consensus 195 ~L~~~~l~~lp~~i 208 (430)
+..+|.+..+|..+
T Consensus 129 ds~~na~~eid~dl 142 (177)
T KOG4579|consen 129 DSPENARAEIDVDL 142 (177)
T ss_pred cCCCCccccCcHHH
Confidence 99999888888764
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=5.3e-05 Score=63.99 Aligned_cols=104 Identities=23% Similarity=0.160 Sum_probs=76.1
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch--hhccCcccceeecCCcc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD--EFWKMNNLRHLNFGSIT 223 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~ 223 (430)
.+||++|.+..+ +.|..++.|.+|.+.+|+|+.+-+.+-.-+++|++|.|.+|+|.++.+ .+..+++|++|.+-+|.
T Consensus 46 ~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 46 AIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred eecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 889999988765 346788899999999999998866663557789999999998887654 26778888888887777
Q ss_pred cCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 224 LPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 224 ~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
+.. -+ . -..-. +..+++|+.|+.....
T Consensus 125 v~~-k~----------~-------YR~yv-l~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 125 VEH-KK----------N-------YRLYV-LYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhc-cc----------C-------ceeEE-EEecCcceEeehhhhh
Confidence 765 11 0 01111 5666777777776665
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.58 E-value=6.5e-06 Score=76.66 Aligned_cols=251 Identities=16% Similarity=0.097 Sum_probs=144.4
Q ss_pred cceEEEEEecCCccc---ccccccccccCCceeecCCCC-Cccc-ChHhhhcCCCccEEecCCC-Cccccch--hhccCc
Q 047903 141 HMHSLVLDLGSLVLI---HYLSGIENLFLLRYLKLNIPS-LKSL-PSPLLSNLLNLYTLDMPFS-YIDHTAD--EFWKMN 212 (430)
Q Consensus 141 ~L~~L~L~l~~~~l~---~lp~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~~L~~L~~L~L~~~-~l~~lp~--~i~~L~ 212 (430)
.|+ .|.++|+.-. .+-..-..++++..|.+.+|. +++- -.++-..+++|++|++..| .++...- -...++
T Consensus 139 ~lk--~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLK--ELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccc--cccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 455 6777777632 222333467788888888776 3321 1223256888888888887 6664332 245678
Q ss_pred ccceeecCCcccCCC--cC---ccCCCCcccceeecCCCC-cchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCC
Q 047903 213 NLRHLNFGSITLPAH--PR---KYCRSLENLNFISALHPC-CCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCL 286 (430)
Q Consensus 213 ~L~~L~l~~~~~~~~--lp---~~l~~L~~L~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 286 (430)
+|++++++.|.-... +. ...++++.+...+|.... ..+..+-+....+.++++..+.......+...-.....|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 888888877653321 21 334445555444444211 111110133344455555555422222333333445667
Q ss_pred CEEEEecCCCCCCceEEEEE--cccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCce--
Q 047903 287 ESLKLVSESKMPTLSKIVLV--EYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEW-- 362 (430)
Q Consensus 287 ~~L~l~~~~~~~~L~~L~l~--~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-- 362 (430)
+.|..++ +..+....+| ..+- ++|+.|.++.|+.- .+..+..-....+.|+.+++..|.....-
T Consensus 297 q~l~~s~---~t~~~d~~l~aLg~~~-~~L~~l~l~~c~~f--------sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 297 QVLCYSS---CTDITDEVLWALGQHC-HNLQVLELSGCQQF--------SDRGFTMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred hhhcccC---CCCCchHHHHHHhcCC-CceEEEeccccchh--------hhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence 7777766 4444433321 2244 78899999888631 22223333456788999998876544322
Q ss_pred EEcCCccccccEeEEeecCCCCcC-----CCCCCCCCCCCEEEEecCh
Q 047903 363 TMGIGAMPKLECLIINPCAYLKKM-----PEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 363 ~~~~~~~~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~~~ 405 (430)
.....++|.|+.|.++.|...++. ..+-..+..|+.+.+++||
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 222346899999999999876654 3444567789999999999
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.46 E-value=5.1e-05 Score=66.97 Aligned_cols=233 Identities=18% Similarity=0.091 Sum_probs=126.6
Q ss_pred cCcceEEEEEecCCccc-----ccccccccccCCceeecCCCC---Cc-ccCh-------HhhhcCCCccEEecCCCCcc
Q 047903 139 DSHMHSLVLDLGSLVLI-----HYLSGIENLFLLRYLKLNIPS---LK-SLPS-------PLLSNLLNLYTLDMPFSYID 202 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~-----~lp~~~~~l~~L~~L~L~~~~---i~-~lp~-------~i~~~L~~L~~L~L~~~~l~ 202 (430)
+..+. .++||||.+. .+...+.+-.+|+..+++.-- .+ ++|+ .+ -+|++|++.+||.|.+.
T Consensus 29 ~d~~~--evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL-lkcp~l~~v~LSDNAfg 105 (388)
T COG5238 29 MDELV--EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL-LKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hccee--EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHH-hcCCcceeeeccccccC
Confidence 44455 8999999976 334556677888888887632 11 3333 34 78999999999999544
Q ss_pred -ccchh----hccCcccceeecCCcccCCCcC--------------ccCCCCcccceeecCC----CCcc-hh-hhcCCC
Q 047903 203 -HTADE----FWKMNNLRHLNFGSITLPAHPR--------------KYCRSLENLNFISALH----PCCC-TE-DILGRL 257 (430)
Q Consensus 203 -~lp~~----i~~L~~L~~L~l~~~~~~~~lp--------------~~l~~L~~L~~~~~~~----~~~~-~~-~~l~~l 257 (430)
..|+. |+.-+.|.||.+++|-+.. +- .+..+-..|..+.|.. ++.. .. ..+..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp-~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGP-IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCc-cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 44443 6778889999999887654 22 1122222333344432 1111 00 002233
Q ss_pred CCCceEEEEccccc---cHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE--EcccccCCcceEEEEccccCCcccccc
Q 047903 258 PNLRNLRIWGDLSY---YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL--VEYQFPPRLTHLSFSNTELMEDPKSRA 332 (430)
Q Consensus 258 ~~L~~L~l~~~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~L~L~~~~l~~~~~~~~ 332 (430)
.+|+++.+..|... ...-....+..+.+|+.|+|.++- ++...+..+ ....- +.|+.|.+.+|-+........
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W-~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEW-NLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhccc-chhhhccccchhhccccHHHH
Confidence 56777777776511 122223444556677777776511 111111111 12233 667888888887654321000
Q ss_pred cCCCeEEEcCCCCCcccEEEEeeCCCCCceE-------EcCCccccccEeEEeecC
Q 047903 333 SSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-------MGIGAMPKLECLIINPCA 381 (430)
Q Consensus 333 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~~~~L~~L~l~~c~ 381 (430)
+. .+....+|+|..|...+...-..+. +..+++|-|..|.+.++.
T Consensus 263 ~~----~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 263 LR----RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HH----HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 00 1112346777777776522111111 223578888888888754
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=9.4e-05 Score=76.22 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=67.4
Q ss_pred CCeeEEEEeecCCC--ccccccc---cCcceEEEEEecCCccc--ccccccccccCCceeecCCCCCcccChHhhhcCCC
Q 047903 118 KNVKRINVFEKQSD--FAHLDDY---DSHMHSLVLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLN 190 (430)
Q Consensus 118 ~~~r~L~l~~~~~~--~~~~~~~---~~~L~~L~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~ 190 (430)
.++++|.+. .... ...+..+ +|.|+ .|.++|-.+. ++..-..++++|+.||+++++++.+ .++ ++|++
T Consensus 122 ~nL~~LdI~-G~~~~s~~W~~kig~~LPsL~--sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDIS-GSELFSNGWPKKIGTMLPSLR--SLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKN 196 (699)
T ss_pred HhhhhcCcc-ccchhhccHHHHHhhhCcccc--eEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hcccc
Confidence 456666665 3221 1122222 78888 6666666543 3334456788888888888888877 677 88888
Q ss_pred ccEEecCCCCccccc--hhhccCcccceeecCCcccCC
Q 047903 191 LYTLDMPFSYIDHTA--DEFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 191 L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~ 226 (430)
||+|.+++=.+..-. ..+.+|++|++||+|......
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence 888888765554322 247778888888888766554
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.31 E-value=0.00061 Score=65.07 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=50.9
Q ss_pred CCeeEEEEeecCCCccccccccCcceEEEEEecCCc-ccccccccccccCCceeecCCC-CCcccChHhhhcCCCccEEe
Q 047903 118 KNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLV-LIHYLSGIENLFLLRYLKLNIP-SLKSLPSPLLSNLLNLYTLD 195 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~-l~~lp~~~~~l~~L~~L~L~~~-~i~~lp~~i~~~L~~L~~L~ 195 (430)
.++++|.+. ++....+| .+.++|+ .|.+++|. ++.+|..+. .+|++|++++| .+..+|++ |+.|+
T Consensus 52 ~~l~~L~Is-~c~L~sLP-~LP~sLt--sL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s-------Le~L~ 118 (426)
T PRK15386 52 RASGRLYIK-DCDIESLP-VLPNELT--EITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES-------VRSLE 118 (426)
T ss_pred cCCCEEEeC-CCCCcccC-CCCCCCc--EEEccCCCCcccCCchhh--hhhhheEccCcccccccccc-------cceEE
Confidence 446678887 66666565 3456688 77777755 667776553 47888888887 57777754 45666
Q ss_pred cCCCC---ccccchhh
Q 047903 196 MPFSY---IDHTADEF 208 (430)
Q Consensus 196 L~~~~---l~~lp~~i 208 (430)
++.+. +..+|.++
T Consensus 119 L~~n~~~~L~~LPssL 134 (426)
T PRK15386 119 IKGSATDSIKNVPNGL 134 (426)
T ss_pred eCCCCCcccccCcchH
Confidence 66553 45566543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00049 Score=58.28 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=63.0
Q ss_pred cCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhc-cCcccceeecCCcccCCCcCccCCCCcccceeec
Q 047903 165 FLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFW-KMNNLRHLNFGSITLPAHPRKYCRSLENLNFISA 243 (430)
Q Consensus 165 ~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~ 243 (430)
.+.-.++|++|.+..++. + ..++.|.+|.+.+|.|+.+...+. -+++|+.|.+.+|.+.. +
T Consensus 42 d~~d~iDLtdNdl~~l~~-l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l--------------- 103 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-L-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-L--------------- 103 (233)
T ss_pred cccceecccccchhhccc-C-CCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-h---------------
Confidence 345567777777666532 3 667777777777777777755543 34557777777776655 1
Q ss_pred CCCCcchhhhcCCCCCCceEEEEccccc-cHHHHHHHhcCCCCCCEEEEec
Q 047903 244 LHPCCCTEDILGRLPNLRNLRIWGDLSY-YQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 244 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
..+.. +..+++|+.|.+.++.-. ....-.-.+..+++|+.|++..
T Consensus 104 ----~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 104 ----GDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ----hhcch-hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 22333 677888888888888500 0000111244556666666654
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=8.8e-05 Score=65.74 Aligned_cols=100 Identities=20% Similarity=0.103 Sum_probs=47.1
Q ss_pred ccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcC-----ccCCCCccc
Q 047903 164 LFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-----KYCRSLENL 238 (430)
Q Consensus 164 l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-----~~l~~L~~L 238 (430)
+.+.+.|+..+|++..+ .-+ .+++.|++|.|+-|+|+.+.. +..+++|++|+|..|.+.. +. .++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI-sic-~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SIC-EKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH-HHH-HhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 33444455555555544 112 445555555555555555533 4455555555555555444 22 333344443
Q ss_pred ceeecCC---CCc--chhhhcCCCCCCceEEEEcc
Q 047903 239 NFISALH---PCC--CTEDILGRLPNLRNLRIWGD 268 (430)
Q Consensus 239 ~~~~~~~---~~~--~~~~~l~~l~~L~~L~l~~~ 268 (430)
.+..+.- .+. .... +.-+++|++|+=...
T Consensus 94 WL~ENPCc~~ag~nYR~~V-LR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKV-LRVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchhHHHHH-HHHcccchhccCccc
Confidence 3333221 111 1222 667788888754443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.00052 Score=60.50 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=25.7
Q ss_pred cCCceeecCCCCCcccChHhhhcCCCccEEecCCC--Ccc-ccchhhccCcccceeecCCcccC
Q 047903 165 FLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS--YID-HTADEFWKMNNLRHLNFGSITLP 225 (430)
Q Consensus 165 ~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~~ 225 (430)
..|..|++.+..++++- .+ -.|++|++|.++.| .+. .++.-..++++|+++++++|++.
T Consensus 43 ~~le~ls~~n~gltt~~-~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceeecc-cC-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33444444444433331 12 34455555555555 222 22222334455555555555544
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.86 E-value=0.00026 Score=70.79 Aligned_cols=130 Identities=25% Similarity=0.210 Sum_probs=85.3
Q ss_pred cccCCceeecCCCC-Ccc--cChHhhhcCCCccEEecCCC--Cccccc----hhhccCcccceeecCCcc-cCCC-cC--
Q 047903 163 NLFLLRYLKLNIPS-LKS--LPSPLLSNLLNLYTLDMPFS--YIDHTA----DEFWKMNNLRHLNFGSIT-LPAH-PR-- 229 (430)
Q Consensus 163 ~l~~L~~L~L~~~~-i~~--lp~~i~~~L~~L~~L~L~~~--~l~~lp----~~i~~L~~L~~L~l~~~~-~~~~-lp-- 229 (430)
.++.|+.|.+.++. +.. +-+.. ..+++|+.|+++++ .+...+ .....+++|++|+++++. ++.. +.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 47888888888874 544 33444 88999999999873 333222 234567889999999887 4431 22
Q ss_pred -ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903 230 -KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 230 -~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
..+++|+.|....+.. +...+..+...+++|++|+++++.......+.......++|+.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 4477888888555663 445555536678889999999887433444444455566666665544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00018 Score=63.75 Aligned_cols=96 Identities=21% Similarity=0.201 Sum_probs=66.1
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh--hccCcccceeecCCcc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE--FWKMNNLRHLNFGSIT 223 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~--i~~L~~L~~L~l~~~~ 223 (430)
.|+.-||.++.+ ....+|+.|++|.|+-|+|+++ ..+ ..|++|+.|.|+.|.|..+.+- +.++++|+.|-|..|.
T Consensus 23 KLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl-~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 23 KLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APL-QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhH-HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 566667766654 2234678888888888888877 335 7888888888888877776553 6788888888777766
Q ss_pred cCCCcC--------ccCCCCcccceeecC
Q 047903 224 LPAHPR--------KYCRSLENLNFISAL 244 (430)
Q Consensus 224 ~~~~lp--------~~l~~L~~L~~~~~~ 244 (430)
-.+.-+ ..+++|++|+-..+.
T Consensus 100 Cc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred cccccchhHHHHHHHHcccchhccCcccc
Confidence 554322 457777777665543
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.58 E-value=0.0005 Score=68.76 Aligned_cols=107 Identities=21% Similarity=0.166 Sum_probs=77.4
Q ss_pred hcCCCccEEecCCC-Cccc--cchhhccCcccceeecCCc-ccCCCcC-------ccCCCCcccceeecC-CCCcchhhh
Q 047903 186 SNLLNLYTLDMPFS-YIDH--TADEFWKMNNLRHLNFGSI-TLPAHPR-------KYCRSLENLNFISAL-HPCCCTEDI 253 (430)
Q Consensus 186 ~~L~~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~l~~~-~~~~~lp-------~~l~~L~~L~~~~~~-~~~~~~~~~ 253 (430)
..+++|+.|.+.++ .+.. +-......++|+.|+++++ ......+ ..+.+|+.|.+..+. .+...+..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~- 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA- 263 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH-
Confidence 56899999999999 7775 4455788999999999973 2221111 556788888888777 34455555
Q ss_pred cC-CCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903 254 LG-RLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 254 l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
+. .+++|+.|.+..+.......+......+++|++|++++
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence 44 37899999977775334556666677888999999997
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.002 Score=56.90 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=51.8
Q ss_pred EEEecCCcccccccccccccCCceeecCCC--CCc-ccChHhhhcCCCccEEecCCCCccccc--hhhccCcccceeecC
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIP--SLK-SLPSPLLSNLLNLYTLDMPFSYIDHTA--DEFWKMNNLRHLNFG 220 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~--~i~-~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~ 220 (430)
.+++.++.++.+ ..+-.|++|++|.++.| .+. .++..+ .++++|++|++++|++..+. +.+..+.+|..|++.
T Consensus 47 ~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 47 LLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF 124 (260)
T ss_pred hhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence 444444444432 23456778888988888 444 555555 66789999999988666432 126677778888887
Q ss_pred CcccCC
Q 047903 221 SITLPA 226 (430)
Q Consensus 221 ~~~~~~ 226 (430)
.|...+
T Consensus 125 n~~~~~ 130 (260)
T KOG2739|consen 125 NCSVTN 130 (260)
T ss_pred cCCccc
Confidence 777665
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.39 E-value=0.0014 Score=34.67 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=7.7
Q ss_pred ccEEecCCCCccccchh
Q 047903 191 LYTLDMPFSYIDHTADE 207 (430)
Q Consensus 191 L~~L~L~~~~l~~lp~~ 207 (430)
|++|++++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.15 E-value=0.0015 Score=34.55 Aligned_cols=21 Identities=48% Similarity=0.657 Sum_probs=14.3
Q ss_pred CCceeecCCCCCcccChHhhhc
Q 047903 166 LLRYLKLNIPSLKSLPSPLLSN 187 (430)
Q Consensus 166 ~L~~L~L~~~~i~~lp~~i~~~ 187 (430)
+|++|++++|+++.+|+++ ++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~-~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF-SN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTT-TT
T ss_pred CccEEECCCCcCEeCChhh-cC
Confidence 4677777777777777664 54
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.76 E-value=0.021 Score=50.98 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=26.8
Q ss_pred cCCCCCCceEEEEccc--cccHHHHHHHhcCCCCCCEEEEec
Q 047903 254 LGRLPNLRNLRIWGDL--SYYQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 254 l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
+..+.+|+.|++.+|. ...+..+...+...+.|+.|.+.+
T Consensus 210 l~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred HHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 4566788888888886 122334455667777788887765
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.43 E-value=0.00062 Score=58.92 Aligned_cols=85 Identities=16% Similarity=0.040 Sum_probs=73.2
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
+...+ +||++.|++..+-..|+-++.|..|+++.|++..+|.++ +++..++.+++..|+....|.++++++++++++
T Consensus 41 ~kr~t--vld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVT--VLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceee--eehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 44555 899999988877788888889999999999999999988 999999999999889999999999999999998
Q ss_pred cCCcccCC
Q 047903 219 FGSITLPA 226 (430)
Q Consensus 219 l~~~~~~~ 226 (430)
+.++.+..
T Consensus 118 ~k~~~~~~ 125 (326)
T KOG0473|consen 118 QKKTEFFR 125 (326)
T ss_pred hccCcchH
Confidence 88877643
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.22 E-value=0.012 Score=28.78 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=5.2
Q ss_pred CccEEecCCCCcccc
Q 047903 190 NLYTLDMPFSYIDHT 204 (430)
Q Consensus 190 ~L~~L~L~~~~l~~l 204 (430)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.11 E-value=0.037 Score=44.21 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=25.7
Q ss_pred ccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecC
Q 047903 154 LIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFG 220 (430)
Q Consensus 154 l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~ 220 (430)
+..++ ..|..+.+|+.+.+..+ +..++...|.++++|+.+.+.. .+..++.. +..+++|+.+++.
T Consensus 23 ~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 23 IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp --EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 44443 34445555555555443 5555444445555555555543 33333332 3445555555443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.98 E-value=0.083 Score=42.15 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCCCCCCCCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhh
Q 047903 110 GDPKGKSRKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLL 185 (430)
Q Consensus 110 ~~~~~~~~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~ 185 (430)
+...+....+++.+.+. +. ...+.+.. +.+++ .+.+.++ +..++ ..|.++..|+.+.+.. .+..++...|
T Consensus 4 ~~~~F~~~~~l~~i~~~-~~-~~~I~~~~F~~~~~l~--~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFP-NT-IKKIGENAFSNCTSLK--SINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp -TTTTTT-TT--EEEET-ST---EE-TTTTTT-TT-S--EEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred CHHHHhCCCCCCEEEEC-CC-eeEeChhhcccccccc--ccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence 34444455567777776 43 33344443 55777 7777764 66666 4677787888888865 6777776676
Q ss_pred hcCCCccEEecCCCCccccchh-hccCcccceeecCC
Q 047903 186 SNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGS 221 (430)
Q Consensus 186 ~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~ 221 (430)
..+.+|+.+++..+ +..++.. +.+. +|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 88888988888664 6666554 5665 777775554
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.84 E-value=0.023 Score=31.29 Aligned_cols=20 Identities=40% Similarity=0.345 Sum_probs=11.3
Q ss_pred cCCceeecCCCCCcccChHh
Q 047903 165 FLLRYLKLNIPSLKSLPSPL 184 (430)
Q Consensus 165 ~~L~~L~L~~~~i~~lp~~i 184 (430)
++|++|+|++|+++.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45555666666555555554
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.84 E-value=0.023 Score=31.29 Aligned_cols=20 Identities=40% Similarity=0.345 Sum_probs=11.3
Q ss_pred cCCceeecCCCCCcccChHh
Q 047903 165 FLLRYLKLNIPSLKSLPSPL 184 (430)
Q Consensus 165 ~~L~~L~L~~~~i~~lp~~i 184 (430)
++|++|+|++|+++.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45555666666555555554
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.72 E-value=0.017 Score=28.24 Aligned_cols=17 Identities=47% Similarity=0.460 Sum_probs=9.7
Q ss_pred cCCceeecCCCCCcccC
Q 047903 165 FLLRYLKLNIPSLKSLP 181 (430)
Q Consensus 165 ~~L~~L~L~~~~i~~lp 181 (430)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36788888888877765
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.66 E-value=0.0031 Score=54.70 Aligned_cols=76 Identities=17% Similarity=0.080 Sum_probs=66.4
Q ss_pred ccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcCcc
Q 047903 154 LIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKY 231 (430)
Q Consensus 154 l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 231 (430)
++.+| ..+..+...+.||++.|++..+...+ +.+..|..|+++.|.+..+|.+++++..++++++..|.... .|.+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~-~p~s 106 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ-QPKS 106 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh-CCcc
Confidence 44666 56778889999999999988887777 89999999999999999999999999999999999998887 7733
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=0.0077 Score=51.23 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=60.7
Q ss_pred CcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc--CCccccccEeEEeecCCCCcCC-CC
Q 047903 313 RLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG--IGAMPKLECLIINPCAYLKKMP-EQ 389 (430)
Q Consensus 313 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~lp-~~ 389 (430)
.++.++-+++.+.... ......+++++.|.+.+|.++..+... .+..++|+.|++++|+.+++-. ..
T Consensus 102 ~IeaVDAsds~I~~eG----------le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG----------LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCchHHHHH----------HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 4667777777654322 112356788889999999988877533 3468999999999999988743 35
Q ss_pred CCCCCCCCEEEEecCh
Q 047903 390 PWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 390 l~~l~~L~~L~l~~~~ 405 (430)
+..+++|+.|.+.+-+
T Consensus 172 L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHhhhhHHHHhcCch
Confidence 6778999999998876
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.97 E-value=0.096 Score=28.70 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=16.7
Q ss_pred CCCccEEecCCCCccccchhh
Q 047903 188 LLNLYTLDMPFSYIDHTADEF 208 (430)
Q Consensus 188 L~~L~~L~L~~~~l~~lp~~i 208 (430)
+++|++|+|++|.++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888763
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.97 E-value=0.096 Score=28.70 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=16.7
Q ss_pred CCCccEEecCCCCccccchhh
Q 047903 188 LLNLYTLDMPFSYIDHTADEF 208 (430)
Q Consensus 188 L~~L~~L~L~~~~l~~lp~~i 208 (430)
+++|++|+|++|.++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888763
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.04 E-value=0.18 Score=43.12 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=51.0
Q ss_pred EEEecCCccccc-ccccccccCCceeecCCCC-Cccc-ChHhhhcCCCccEEecCCC-Cccccch-hhccCcccceeecC
Q 047903 146 VLDLGSLVLIHY-LSGIENLFLLRYLKLNIPS-LKSL-PSPLLSNLLNLYTLDMPFS-YIDHTAD-EFWKMNNLRHLNFG 220 (430)
Q Consensus 146 ~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~l~ 220 (430)
.+|-+++.+... -+.+.+++.++.|.+.+|. +..- -+.+-+-.++|+.|++++| .|++--- .+..+++|+.|.+.
T Consensus 105 aVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 105 AVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred EEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 778888877633 3667788888888888876 2211 1222134688999999999 8886532 37788888888554
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.98 E-value=1.1 Score=24.58 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=8.9
Q ss_pred CCceeecCCCCCcccCh
Q 047903 166 LLRYLKLNIPSLKSLPS 182 (430)
Q Consensus 166 ~L~~L~L~~~~i~~lp~ 182 (430)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34555555555555543
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.07 E-value=1.8 Score=23.76 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=8.3
Q ss_pred CCccEEecCCCCccc
Q 047903 189 LNLYTLDMPFSYIDH 203 (430)
Q Consensus 189 ~~L~~L~L~~~~l~~ 203 (430)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455666666665543
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.12 E-value=1.8 Score=23.01 Aligned_cols=14 Identities=43% Similarity=0.413 Sum_probs=7.8
Q ss_pred CCccEEecCCCCcc
Q 047903 189 LNLYTLDMPFSYID 202 (430)
Q Consensus 189 ~~L~~L~L~~~~l~ 202 (430)
++|++|+|++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56677777776654
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.02 E-value=1.4 Score=23.98 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=7.5
Q ss_pred ccccEeEEeecCCCC
Q 047903 370 PKLECLIINPCAYLK 384 (430)
Q Consensus 370 ~~L~~L~l~~c~~l~ 384 (430)
|+|+.|++.+|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 445555555555443
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=52.04 E-value=11 Score=20.95 Aligned_cols=13 Identities=38% Similarity=0.324 Sum_probs=7.0
Q ss_pred CCceeecCCCCCc
Q 047903 166 LLRYLKLNIPSLK 178 (430)
Q Consensus 166 ~L~~L~L~~~~i~ 178 (430)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.35 E-value=14 Score=36.89 Aligned_cols=81 Identities=22% Similarity=0.116 Sum_probs=50.3
Q ss_pred cccCCceeecCCCCCccc--ChHhhhcCCCccEEecCCC--Cccccchhhcc--CcccceeecCCcccCCCcC-------
Q 047903 163 NLFLLRYLKLNIPSLKSL--PSPLLSNLLNLYTLDMPFS--YIDHTADEFWK--MNNLRHLNFGSITLPAHPR------- 229 (430)
Q Consensus 163 ~l~~L~~L~L~~~~i~~l--p~~i~~~L~~L~~L~L~~~--~l~~lp~~i~~--L~~L~~L~l~~~~~~~~lp------- 229 (430)
+.+.+..++|++|++..+ -.++-..-++|.+|+|++| .+...++ +.+ ...|++|-+.||.+....-
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 455666777888876644 1233356788888888888 4443333 333 3347788888887766421
Q ss_pred ---ccCCCCcccceeecC
Q 047903 230 ---KYCRSLENLNFISAL 244 (430)
Q Consensus 230 ---~~l~~L~~L~~~~~~ 244 (430)
..+++|..|+...+.
T Consensus 295 ~i~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGVEVQ 312 (585)
T ss_pred HHHHhcchheeecCcccC
Confidence 467777777665554
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.13 E-value=25 Score=42.23 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=14.6
Q ss_pred ecCCcccccc-cccccccCCceeecCCCC
Q 047903 149 LGSLVLIHYL-SGIENLFLLRYLKLNIPS 176 (430)
Q Consensus 149 l~~~~l~~lp-~~~~~l~~L~~L~L~~~~ 176 (430)
|++|.|+.+| ..|..+.+|+.|+|++|.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNP 30 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNP 30 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCc
Confidence 4555555554 344455555555555544
No 90
>PF14162 YozD: YozD-like protein
Probab=28.87 E-value=97 Score=20.04 Aligned_cols=30 Identities=23% Similarity=0.582 Sum_probs=21.2
Q ss_pred HHhcCCCCC--ChHHHHHHHHHHHHHCCceee
Q 047903 44 WIAEGFIPD--NSEATAEKDLELLINRGFVDT 73 (430)
Q Consensus 44 w~~~g~i~~--~~~~~~~~~~~~L~~~~ll~~ 73 (430)
.+.-||++. ..+++|..-|+-|+.++++..
T Consensus 21 L~kRGyvP~e~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 21 LVKRGYVPTEEELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HHHccCCCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344577776 777777777888887777653
No 91
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=27.57 E-value=2.3e+02 Score=21.26 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHHHCCceeeeecCCCCcEeEEEEChhHHHH
Q 047903 53 NSEATAEKDLELLINRGFVDTRKRGAGGTINTCSVHGRCRPV 94 (430)
Q Consensus 53 ~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhd~~~~l 94 (430)
-.++.|.+|++.|+++|++...+.. +...+.+-+--.++
T Consensus 43 lny~~~~~yi~~L~~~Gli~~~~~~---~~~~y~lT~KG~~f 81 (95)
T COG3432 43 LNYKRAQKYIEMLVEKGLIIKQDNG---RRKVYELTEKGKRF 81 (95)
T ss_pred cCHHHHHHHHHHHHhCCCEEeccCC---ccceEEEChhHHHH
Confidence 5688999999999999988776643 22356666554444
No 92
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=26.97 E-value=1.4e+02 Score=19.71 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=37.7
Q ss_pred CChhhhHHHHhhhcccCCCceechhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCC
Q 047903 14 RLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGG 80 (430)
Q Consensus 14 ~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~ 80 (430)
+|....-.++.++.-+|++ .+...+|.+.+-- ........++.|.+++++.......|+
T Consensus 2 glt~~q~~vL~~l~~~~~~-~~t~~~la~~l~~-------~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGE-ELTQSELAERLGI-------SKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTS-GEEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred ccCHHHHHHHHHHHHCCCC-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 3455566677777777765 4556666665511 223455788999999999987765554
No 93
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=25.71 E-value=1.4e+02 Score=20.06 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCceeeeecCCCCcEeEEEEC
Q 047903 58 AEKDLELLINRGFVDTRKRGAGGTINTCSVH 88 (430)
Q Consensus 58 ~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mh 88 (430)
+...++.|+++++++...+..+++...++.-
T Consensus 35 vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT 65 (68)
T PF13463_consen 35 VSRIIKKLEEKGLVEKERDPHDKRSKRYRLT 65 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCTTSEEEEE-
T ss_pred HHHHHHHHHHCCCEEecCCCCcCCeeEEEeC
Confidence 4478999999999998888778776666553
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=23.16 E-value=2e+02 Score=31.45 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=49.9
Q ss_pred hcCChhhhHHHHhhhcccCCCceechhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCCcEeEEEEChhH
Q 047903 12 YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTINTCSVHGRC 91 (430)
Q Consensus 12 Y~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhd~~ 91 (430)
|+.||+..+..+...|+++ .++ .++...-.+. +.+...+++|.+.+++...... .+ ..++.|+++
T Consensus 260 ~~~l~~~~~~~l~~~a~~~---~~~-~~l~~~l~~~--------~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~ 324 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLR---SMN-DALIVRVTGE--------ENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLF 324 (903)
T ss_pred HhcCCHHHHHHHHHhcccc---cCC-HHHHHHHcCC--------CcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHH
Confidence 7899999999999999986 344 3343322221 1257789999999997543221 11 357789999
Q ss_pred HHHHHHHh
Q 047903 92 RPVLLSVA 99 (430)
Q Consensus 92 ~~l~~~~~ 99 (430)
++......
T Consensus 325 r~~l~~~l 332 (903)
T PRK04841 325 ASFLRHRC 332 (903)
T ss_pred HHHHHHHH
Confidence 99987654
No 95
>PF13730 HTH_36: Helix-turn-helix domain
Probab=22.93 E-value=2.2e+02 Score=18.26 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=30.0
Q ss_pred CChhhhHHHHhhhcccCCCc--ee-chhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCce
Q 047903 14 RLPFCLKLCFLYLSVFPAHL--EI-STRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFV 71 (430)
Q Consensus 14 ~L~~~~k~cfl~~~~fp~~~--~i-~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll 71 (430)
+|.+..+..+.++.-|..+. -+ ..+.+-. .. | ........++++|+++|+|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~-~~--g----~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAK-DL--G----VSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHH-HH--C----cCHHHHHHHHHHHHHCcCC
Confidence 57777888887765554221 12 2222222 22 2 2266777889999998875
No 96
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=21.76 E-value=43 Score=33.37 Aligned_cols=16 Identities=31% Similarity=0.384 Sum_probs=14.9
Q ss_pred hhcCChhhhHHHHhhh
Q 047903 11 KYCRLPFCLKLCFLYL 26 (430)
Q Consensus 11 sY~~L~~~~k~cfl~~ 26 (430)
|||+|..++|.|++|+
T Consensus 7 Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAEEKECLLFL 22 (497)
T ss_pred cccccchhhHHHHHHH
Confidence 8999999999999985
No 97
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=21.74 E-value=1.8e+02 Score=24.05 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHhhcCChhhhHHHHhhhcccCCCceechhHHHHHHHhcCCCCC-----ChHHHHHHHHHHH
Q 047903 8 WYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPD-----NSEATAEKDLELL 65 (430)
Q Consensus 8 l~~sY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~-----~~~~~~~~~~~~L 65 (430)
+.-.|..+..+.|-.|||- .-.||++|.|-+ .+-..+...+..+
T Consensus 88 isR~Y~~ls~n~KL~fWY~--------------Lae~M~~G~VipvP~~Y~ls~~a~~vl~~I 136 (159)
T PF09150_consen 88 ISRAYGALSANTKLGFWYQ--------------LAEGMEQGTVIPVPSGYQLSENANEVLEAI 136 (159)
T ss_dssp HHHHHHCC-HHHHHHHHHH--------------HHHHHHTTSS--S-TT----HHHHHHHHHH
T ss_pred HHHHHhccCCcchHHHHHH--------------HHHHhcCCcEecCCCCCCcCHHHHHHHHHH
Confidence 3567999999999999993 347999998865 4444455555544
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.22 E-value=1.1e+02 Score=30.82 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=28.6
Q ss_pred hcCCCccEEecCCCCccccc---hhhccCcccceeecCCc
Q 047903 186 SNLLNLYTLDMPFSYIDHTA---DEFWKMNNLRHLNFGSI 222 (430)
Q Consensus 186 ~~L~~L~~L~L~~~~l~~lp---~~i~~L~~L~~L~l~~~ 222 (430)
.+-+.+..+.|++|++..+. .-....++|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 56777888999999666553 33466789999999999
No 99
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.87 E-value=1.4e+02 Score=18.45 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=6.1
Q ss_pred ccCCcceEEE
Q 047903 310 FPPRLTHLSF 319 (430)
Q Consensus 310 lp~~L~~L~L 319 (430)
+|+++++|.+
T Consensus 10 iP~~l~~L~~ 19 (44)
T PF05725_consen 10 IPSSLKSLIF 19 (44)
T ss_pred eCCCCeEEEE
Confidence 3566666666
No 100
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=20.45 E-value=2.6e+02 Score=20.34 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=29.7
Q ss_pred chhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeec
Q 047903 36 STRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKR 76 (430)
Q Consensus 36 ~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~ 76 (430)
.=.++|.+.+..|.+ .-.+.|..+-+.|++.|+|..+..
T Consensus 32 ~GselVdWL~~~~~~--~sR~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 32 CGCDLVSWLIEVGLA--QDRGEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred cHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHCCCEEecCC
Confidence 345788877777777 344558888899999999998764
Done!