Query 047903
Match_columns 430
No_of_seqs 301 out of 3095
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 99.9 4.7E-24 1.6E-28 206.2 13.8 270 116-405 43-350 (390)
2 2id5_A Lingo-1, leucine rich r 99.9 5.4E-24 1.9E-28 211.3 14.4 270 116-405 30-331 (477)
3 4fcg_A Uncharacterized protein 99.9 1.5E-24 5E-29 204.5 9.6 233 139-405 80-312 (328)
4 3rgz_A Protein brassinosteroid 99.9 2.8E-24 9.6E-29 225.3 10.8 108 312-429 632-765 (768)
5 3oja_B Anopheles plasmodium-re 99.9 1.5E-23 5.1E-28 213.8 13.3 270 117-405 50-356 (597)
6 2id5_A Lingo-1, leucine rich r 99.9 9.9E-23 3.4E-27 202.2 17.7 266 121-405 14-307 (477)
7 4eco_A Uncharacterized protein 99.9 1.8E-23 6.2E-28 214.5 10.8 268 116-405 247-577 (636)
8 3v47_A TOLL-like receptor 5B a 99.9 4.2E-23 1.4E-27 203.6 12.3 281 116-405 28-406 (455)
9 3o6n_A APL1; leucine-rich repe 99.9 2.1E-22 7.1E-27 194.6 16.8 240 116-381 67-350 (390)
10 4ecn_A Leucine-rich repeat pro 99.9 9.2E-23 3.1E-27 213.7 15.0 278 116-405 446-817 (876)
11 4fmz_A Internalin; leucine ric 99.9 1.9E-22 6.5E-27 191.7 15.6 260 117-405 43-322 (347)
12 4fmz_A Internalin; leucine ric 99.9 3E-22 1E-26 190.4 14.7 259 116-405 64-344 (347)
13 2z80_A TOLL-like receptor 2, v 99.9 1.2E-22 4E-27 193.7 11.5 262 123-405 36-312 (353)
14 2z7x_B TOLL-like receptor 1, v 99.9 5.2E-22 1.8E-26 199.2 16.1 103 118-226 21-129 (520)
15 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.7E-22 2.6E-26 199.8 17.1 120 117-243 51-179 (562)
16 3oja_B Anopheles plasmodium-re 99.9 7.1E-22 2.4E-26 201.4 16.5 240 116-381 73-356 (597)
17 1o6v_A Internalin A; bacterial 99.9 1.4E-21 4.8E-26 193.3 17.4 268 117-405 45-342 (466)
18 2z81_A CD282 antigen, TOLL-lik 99.9 6.9E-22 2.4E-26 199.6 14.6 281 117-405 25-421 (549)
19 3v47_A TOLL-like receptor 5B a 99.9 1.8E-22 6E-27 199.1 9.9 259 111-387 47-412 (455)
20 3t6q_A CD180 antigen; protein- 99.9 6.9E-22 2.4E-26 202.0 14.6 148 116-269 31-190 (606)
21 3rgz_A Protein brassinosteroid 99.9 1.3E-22 4.5E-27 212.7 9.0 245 146-405 273-549 (768)
22 1ogq_A PGIP-2, polygalacturona 99.9 3.8E-23 1.3E-27 193.6 4.3 241 118-405 50-302 (313)
23 4eco_A Uncharacterized protein 99.9 2.6E-22 9E-27 205.9 9.8 265 116-405 271-598 (636)
24 1xku_A Decorin; proteoglycan, 99.9 2E-21 7E-26 183.3 15.1 257 119-405 32-304 (330)
25 3bz5_A Internalin-J, INLJ; leu 99.9 3.8E-21 1.3E-25 189.2 15.5 263 117-405 41-350 (457)
26 3t6q_A CD180 antigen; protein- 99.9 3.3E-22 1.1E-26 204.4 8.0 268 119-405 255-558 (606)
27 3j0a_A TOLL-like receptor 5; m 99.9 2.8E-21 9.5E-26 204.7 15.3 125 116-244 22-159 (844)
28 1ogq_A PGIP-2, polygalacturona 99.9 9.3E-23 3.2E-27 191.0 3.4 224 116-387 74-308 (313)
29 3vq2_A TLR4, TOLL-like recepto 99.9 5.1E-21 1.7E-25 195.6 16.6 168 116-291 54-236 (606)
30 4ecn_A Leucine-rich repeat pro 99.9 9.3E-22 3.2E-26 206.1 10.9 265 116-405 513-838 (876)
31 1o6v_A Internalin A; bacterial 99.9 7.5E-21 2.6E-25 188.1 16.5 270 116-405 66-386 (466)
32 2z66_A Variable lymphocyte rec 99.9 8.8E-22 3E-26 183.8 9.1 241 122-405 11-259 (306)
33 2z7x_B TOLL-like receptor 1, v 99.9 9.2E-21 3.1E-25 190.1 17.1 138 121-268 3-148 (520)
34 1xku_A Decorin; proteoglycan, 99.8 2.6E-21 8.9E-26 182.6 12.0 261 116-405 50-330 (330)
35 4fcg_A Uncharacterized protein 99.8 1.2E-21 4E-26 184.7 9.0 219 117-379 80-310 (328)
36 2ft3_A Biglycan; proteoglycan, 99.8 6.9E-22 2.4E-26 186.7 7.4 232 120-380 35-274 (332)
37 1jl5_A Outer protein YOPM; leu 99.8 1.3E-20 4.6E-25 185.2 14.8 263 118-405 111-407 (454)
38 1ziw_A TOLL-like receptor 3; i 99.8 4.9E-21 1.7E-25 198.4 12.2 273 116-405 23-364 (680)
39 3zyj_A Leucine-rich repeat-con 99.8 1.5E-20 5.1E-25 184.6 14.5 239 119-405 44-290 (440)
40 2ft3_A Biglycan; proteoglycan, 99.8 3.1E-21 1E-25 182.3 9.1 240 140-405 33-275 (332)
41 3g06_A SSPH2 (leucine-rich rep 99.8 4.3E-20 1.5E-24 187.4 17.1 235 118-405 61-295 (622)
42 3zyi_A Leucine-rich repeat-con 99.8 2E-20 6.8E-25 184.3 14.3 238 120-405 56-301 (452)
43 2z63_A TOLL-like receptor 4, v 99.8 8.7E-21 3E-25 192.3 11.5 124 117-243 27-159 (570)
44 3vq2_A TLR4, TOLL-like recepto 99.8 1.7E-20 5.8E-25 191.7 13.4 263 117-405 31-361 (606)
45 2z63_A TOLL-like receptor 4, v 99.8 7.7E-21 2.6E-25 192.7 10.5 114 110-226 44-163 (570)
46 4g8a_A TOLL-like receptor 4; l 99.8 2.3E-20 7.9E-25 191.4 14.1 123 116-241 50-181 (635)
47 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-19 4.2E-24 192.1 19.6 157 109-269 39-215 (844)
48 2z81_A CD282 antigen, TOLL-lik 99.8 3.2E-20 1.1E-24 187.4 14.1 192 128-325 14-236 (549)
49 3bz5_A Internalin-J, INLJ; leu 99.8 6.8E-20 2.3E-24 180.3 15.0 231 139-405 41-297 (457)
50 1ozn_A Reticulon 4 receptor; N 99.8 6E-21 2.1E-25 176.2 4.6 213 121-355 14-234 (285)
51 1ziw_A TOLL-like receptor 3; i 99.8 5.9E-20 2E-24 190.3 12.1 266 122-405 8-340 (680)
52 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-20 6.1E-25 175.8 7.1 212 139-405 33-248 (317)
53 2z80_A TOLL-like receptor 2, v 99.8 2.9E-20 9.8E-25 177.1 8.0 247 116-381 50-312 (353)
54 3o53_A Protein LRIM1, AGAP0063 99.8 9.6E-22 3.3E-26 184.5 -3.0 234 117-384 33-276 (317)
55 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-19 4.6E-24 185.7 12.3 138 128-269 40-184 (635)
56 1ozn_A Reticulon 4 receptor; N 99.8 6.4E-20 2.2E-24 169.3 8.8 213 146-405 15-236 (285)
57 3oja_A Leucine-rich immune mol 99.8 9E-21 3.1E-25 188.2 1.1 142 139-292 33-177 (487)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 8E-19 2.7E-23 177.6 15.2 143 120-269 33-180 (562)
59 1wwl_A Monocyte differentiatio 99.8 1.3E-20 4.6E-25 176.3 1.3 235 146-405 47-307 (312)
60 3zyj_A Leucine-rich repeat-con 99.8 5.7E-19 1.9E-23 173.3 12.6 217 146-405 47-266 (440)
61 3zyi_A Leucine-rich repeat-con 99.8 4E-19 1.4E-23 174.9 11.5 217 146-405 58-277 (452)
62 2z66_A Variable lymphocyte rec 99.8 1.3E-19 4.4E-24 169.0 6.5 222 116-381 26-259 (306)
63 3oja_A Leucine-rich immune mol 99.8 1.4E-19 4.8E-24 179.6 7.1 215 163-405 32-248 (487)
64 1jl5_A Outer protein YOPM; leu 99.8 3.5E-18 1.2E-22 167.9 16.3 259 116-405 89-368 (454)
65 2o6q_A Variable lymphocyte rec 99.8 9E-19 3.1E-23 160.3 9.8 149 116-269 14-168 (270)
66 2z62_A TOLL-like receptor 4, v 99.8 6.9E-19 2.4E-23 161.6 6.9 209 129-403 17-233 (276)
67 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-17 3.7E-22 169.8 15.4 232 119-405 41-272 (622)
68 1wwl_A Monocyte differentiatio 99.7 9.2E-20 3.1E-24 170.6 0.0 236 120-381 45-307 (312)
69 2z62_A TOLL-like receptor 4, v 99.7 7.1E-18 2.4E-22 154.8 8.9 130 116-269 26-160 (276)
70 4ay9_X Follicle-stimulating ho 99.7 4.8E-18 1.6E-22 161.5 6.8 234 121-379 12-255 (350)
71 2o6q_A Variable lymphocyte rec 99.7 1.8E-17 6E-22 151.7 9.3 123 141-269 17-144 (270)
72 1h6u_A Internalin H; cell adhe 99.7 3.7E-17 1.3E-21 152.5 10.8 188 117-326 40-231 (308)
73 1h6u_A Internalin H; cell adhe 99.7 6.8E-17 2.3E-21 150.6 12.5 192 139-363 40-233 (308)
74 2xwt_C Thyrotropin receptor; s 99.7 1.5E-17 5.2E-22 149.2 7.5 206 131-382 23-238 (239)
75 1p9a_G Platelet glycoprotein I 99.7 2.7E-17 9.4E-22 151.9 9.0 167 117-292 9-180 (290)
76 2xwt_C Thyrotropin receptor; s 99.7 3.4E-17 1.1E-21 147.0 7.7 205 154-405 23-237 (239)
77 3rfs_A Internalin B, repeat mo 99.7 3.7E-17 1.3E-21 149.7 8.1 147 117-269 40-192 (272)
78 2ast_B S-phase kinase-associat 99.7 3.5E-18 1.2E-22 161.4 0.0 241 119-405 48-304 (336)
79 1p9a_G Platelet glycoprotein I 99.7 6.8E-17 2.3E-21 149.2 8.3 192 139-355 9-204 (290)
80 3rfs_A Internalin B, repeat mo 99.7 5E-17 1.7E-21 148.8 6.5 202 139-395 40-247 (272)
81 3m19_A Variable lymphocyte rec 99.7 2.9E-16 9.8E-21 142.0 10.5 145 120-269 16-166 (251)
82 1z7x_W Ribonuclease inhibitor; 99.7 1.7E-17 6E-22 163.6 2.2 36 369-405 369-409 (461)
83 4ay9_X Follicle-stimulating ho 99.6 1.5E-16 5.2E-21 151.1 8.1 233 146-403 13-255 (350)
84 1h6t_A Internalin B; cell adhe 99.6 4.7E-16 1.6E-20 143.7 10.4 169 139-327 45-215 (291)
85 1z7x_W Ribonuclease inhibitor; 99.6 2.9E-17 9.8E-22 162.0 1.3 148 141-293 86-265 (461)
86 3m19_A Variable lymphocyte rec 99.6 8E-16 2.7E-20 139.0 8.9 141 146-292 18-163 (251)
87 3ogk_B Coronatine-insensitive 99.6 1.2E-15 4.1E-20 155.3 10.6 279 118-405 138-524 (592)
88 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.5E-21 150.6 2.7 232 118-391 70-314 (336)
89 3goz_A Leucine-rich repeat-con 99.6 2E-16 6.8E-21 151.0 3.0 84 140-226 22-123 (362)
90 2ca6_A RAN GTPase-activating p 99.6 4.1E-17 1.4E-21 157.2 -2.8 234 134-381 24-314 (386)
91 4glp_A Monocyte differentiatio 99.6 1.7E-15 5.7E-20 141.4 7.7 223 119-405 65-305 (310)
92 1m9s_A Internalin B; cell inva 99.6 1.7E-15 5.9E-20 153.4 8.1 168 119-327 44-212 (605)
93 3e6j_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 129.2 11.2 143 122-269 23-170 (229)
94 1h6t_A Internalin B; cell adhe 99.6 1.6E-14 5.4E-19 133.4 12.1 162 117-293 45-209 (291)
95 1xeu_A Internalin C; cellular 99.6 3E-15 1E-19 136.1 6.4 169 139-328 18-188 (263)
96 2v9t_B SLIT homolog 2 protein 99.6 1.9E-14 6.6E-19 127.1 11.3 143 122-269 15-163 (220)
97 2v70_A SLIT-2, SLIT homolog 2 99.5 2.2E-14 7.6E-19 126.8 11.5 145 121-269 14-164 (220)
98 4ezg_A Putative uncharacterize 99.5 4E-15 1.4E-19 129.2 6.4 82 139-225 43-125 (197)
99 2p1m_B Transport inhibitor res 99.5 5.6E-15 1.9E-19 150.3 7.7 281 117-405 129-517 (594)
100 2v9t_B SLIT homolog 2 protein 99.5 1.1E-14 3.8E-19 128.7 8.5 120 146-269 15-139 (220)
101 4glp_A Monocyte differentiatio 99.5 2.7E-15 9.2E-20 140.0 4.8 147 118-269 91-262 (310)
102 3ogk_B Coronatine-insensitive 99.5 2E-14 6.9E-19 146.1 11.5 280 117-405 111-499 (592)
103 2o6s_A Variable lymphocyte rec 99.5 5.7E-14 1.9E-18 123.0 11.8 166 122-325 11-178 (208)
104 2o6s_A Variable lymphocyte rec 99.5 9.9E-15 3.4E-19 127.8 6.8 178 146-371 11-190 (208)
105 3goz_A Leucine-rich repeat-con 99.5 1.9E-15 6.5E-20 144.2 1.7 83 141-225 52-151 (362)
106 4ezg_A Putative uncharacterize 99.5 1E-13 3.5E-18 120.3 11.5 144 116-269 42-192 (197)
107 3cvr_A Invasion plasmid antige 99.5 2.2E-14 7.7E-19 143.8 8.0 132 119-269 60-191 (571)
108 2v70_A SLIT-2, SLIT homolog 2 99.5 3.2E-14 1.1E-18 125.7 7.8 120 146-269 15-140 (220)
109 3cvr_A Invasion plasmid antige 99.5 1.8E-13 6.3E-18 137.2 13.7 78 141-230 60-137 (571)
110 2xot_A Amphoterin-induced prot 99.5 4.9E-14 1.7E-18 134.3 8.2 143 122-269 22-174 (361)
111 2ca6_A RAN GTPase-activating p 99.5 3.9E-14 1.3E-18 136.3 7.5 244 117-379 31-339 (386)
112 1m9s_A Internalin B; cell inva 99.5 1.1E-13 3.8E-18 140.1 10.9 145 115-269 62-208 (605)
113 1xeu_A Internalin C; cellular 99.5 8.7E-14 3E-18 126.4 8.8 140 139-293 40-181 (263)
114 2a5y_B CED-4; apoptosis; HET: 99.5 1.1E-14 3.8E-19 146.3 2.9 95 2-104 361-473 (549)
115 2xot_A Amphoterin-induced prot 99.5 2.5E-14 8.7E-19 136.3 4.7 168 146-325 22-202 (361)
116 3e6j_A Variable lymphocyte rec 99.5 2.4E-13 8.3E-18 120.8 10.7 124 116-243 38-169 (229)
117 2p1m_B Transport inhibitor res 99.4 1.7E-14 5.9E-19 146.7 2.7 273 117-405 104-492 (594)
118 2je0_A Acidic leucine-rich nuc 99.4 9.9E-14 3.4E-18 114.6 6.3 127 139-292 16-148 (149)
119 2ell_A Acidic leucine-rich nuc 99.4 1.9E-13 6.3E-18 115.4 7.3 104 118-226 24-134 (168)
120 2wfh_A SLIT homolog 2 protein 99.4 4.5E-13 1.5E-17 115.8 9.8 123 122-269 14-137 (193)
121 2ell_A Acidic leucine-rich nuc 99.4 8.6E-13 2.9E-17 111.2 11.0 125 139-269 23-158 (168)
122 1a9n_A U2A', U2A'; complex (nu 99.4 8.9E-13 3E-17 112.1 9.4 131 116-269 17-151 (176)
123 2je0_A Acidic leucine-rich nuc 99.4 6.4E-13 2.2E-17 109.7 7.6 105 117-226 16-127 (149)
124 2wfh_A SLIT homolog 2 protein 99.4 2E-12 6.7E-17 111.7 10.5 121 146-293 14-135 (193)
125 1w8a_A SLIT protein; signaling 99.4 1.2E-12 4E-17 113.0 8.6 123 122-269 12-137 (192)
126 2o6r_A Variable lymphocyte rec 99.3 4.2E-12 1.4E-16 108.0 10.1 103 121-226 10-114 (177)
127 1w8a_A SLIT protein; signaling 99.3 2E-12 6.8E-17 111.6 8.2 110 117-229 28-143 (192)
128 4b8c_D Glucose-repressible alc 99.3 1.6E-12 5.5E-17 134.8 8.5 148 117-269 172-327 (727)
129 1dce_A Protein (RAB geranylger 99.3 1.9E-12 6.5E-17 130.2 8.7 100 166-269 442-544 (567)
130 2r9u_A Variable lymphocyte rec 99.3 3.9E-12 1.3E-16 107.8 9.1 103 121-226 15-119 (174)
131 3g39_A Variable lymphocyte rec 99.3 4.6E-12 1.6E-16 107.0 8.8 103 121-226 12-116 (170)
132 1ds9_A Outer arm dynein; leuci 99.3 1.1E-13 3.9E-18 120.1 -1.6 124 139-290 47-180 (198)
133 2o6r_A Variable lymphocyte rec 99.3 9.3E-12 3.2E-16 105.8 10.2 120 146-269 11-135 (177)
134 1a9n_A U2A', U2A'; complex (nu 99.3 4E-12 1.4E-16 108.1 6.7 126 139-293 18-149 (176)
135 1dce_A Protein (RAB geranylger 99.3 6.1E-12 2.1E-16 126.5 9.1 119 141-264 442-566 (567)
136 4b8c_D Glucose-repressible alc 99.3 6.7E-12 2.3E-16 130.1 8.6 102 139-244 223-327 (727)
137 3g39_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 100.7 8.5 100 146-269 13-113 (170)
138 2r9u_A Variable lymphocyte rec 99.2 5.4E-11 1.8E-15 100.8 8.5 81 146-229 16-97 (174)
139 1ds9_A Outer arm dynein; leuci 99.1 7.2E-13 2.5E-17 115.0 -4.6 105 116-226 46-154 (198)
140 3sb4_A Hypothetical leucine ri 99.1 2E-10 6.8E-15 107.8 11.2 213 164-401 100-328 (329)
141 3sfz_A APAF-1, apoptotic pepti 99.0 1.6E-10 5.5E-15 127.4 7.4 90 3-102 363-452 (1249)
142 1vt4_I APAF-1 related killer D 99.0 1.7E-10 6E-15 119.7 5.9 84 2-96 353-437 (1221)
143 2ifg_A High affinity nerve gro 98.9 1.6E-09 5.4E-14 102.4 8.1 94 130-226 20-117 (347)
144 2ifg_A High affinity nerve gro 98.9 2.3E-09 7.9E-14 101.2 8.4 97 146-244 12-114 (347)
145 4fdw_A Leucine rich hypothetic 98.8 7.9E-08 2.7E-12 92.4 16.1 238 141-405 136-381 (401)
146 1z6t_A APAF-1, apoptotic prote 98.7 1.4E-08 4.8E-13 103.0 7.7 86 3-98 363-448 (591)
147 4fdw_A Leucine rich hypothetic 98.7 1.4E-07 4.7E-12 90.7 12.9 239 110-379 128-379 (401)
148 3sb4_A Hypothetical leucine ri 98.7 3.1E-08 1.1E-12 92.7 7.2 167 139-317 100-326 (329)
149 3un9_A NLR family member X1; l 98.6 1.3E-08 4.3E-13 96.9 3.3 38 188-225 154-196 (372)
150 3un9_A NLR family member X1; l 98.6 4.9E-09 1.7E-13 99.8 0.3 163 139-326 71-253 (372)
151 4fs7_A Uncharacterized protein 98.3 1.4E-05 4.7E-10 76.6 15.1 270 109-405 62-377 (394)
152 2ra8_A Uncharacterized protein 98.2 6.3E-07 2.2E-11 84.6 3.5 131 186-325 169-320 (362)
153 3rw6_A Nuclear RNA export fact 98.1 1.5E-06 5.2E-11 77.9 3.8 65 162-228 167-236 (267)
154 3e4g_A ATP synthase subunit S, 98.0 7.9E-06 2.7E-10 68.1 5.9 30 146-175 65-95 (176)
155 1io0_A Tropomodulin; LRR prote 98.0 4.2E-06 1.4E-10 71.1 4.3 110 139-269 35-162 (185)
156 1io0_A Tropomodulin; LRR prote 97.9 4.4E-06 1.5E-10 71.0 3.6 117 158-293 29-160 (185)
157 2ra8_A Uncharacterized protein 97.9 4.7E-06 1.6E-10 78.6 3.3 171 117-293 106-316 (362)
158 3e4g_A ATP synthase subunit S, 97.8 1.8E-05 6.3E-10 65.9 5.5 91 156-269 52-150 (176)
159 3rw6_A Nuclear RNA export fact 97.8 2.1E-05 7.1E-10 70.5 6.0 76 139-218 169-257 (267)
160 4fs7_A Uncharacterized protein 97.7 9.4E-05 3.2E-09 70.7 9.7 56 344-403 295-352 (394)
161 4gt6_A Cell surface protein; l 97.4 0.0041 1.4E-07 59.2 16.4 109 109-222 54-170 (394)
162 3rfe_A Platelet glycoprotein I 97.1 0.00065 2.2E-08 53.7 5.8 54 146-201 12-67 (130)
163 3rfe_A Platelet glycoprotein I 96.7 0.0017 5.9E-08 51.2 4.7 56 168-226 11-69 (130)
164 4gt6_A Cell surface protein; l 96.3 0.014 4.9E-07 55.4 9.2 124 159-292 259-386 (394)
165 4h09_A Hypothetical leucine ri 95.7 0.047 1.6E-06 51.4 10.0 58 161-219 259-317 (379)
166 4h09_A Hypothetical leucine ri 95.6 0.046 1.6E-06 51.4 9.4 100 117-222 239-343 (379)
167 1pgv_A TMD-1, tropomodulin TMD 95.5 0.013 4.4E-07 49.6 4.6 41 186-226 67-112 (197)
168 1pgv_A TMD-1, tropomodulin TMD 93.8 0.07 2.4E-06 45.0 4.9 81 139-222 40-136 (197)
169 2lz0_A Uncharacterized protein 52.6 12 0.00041 27.3 3.4 38 160-198 15-52 (100)
170 2lz0_A Uncharacterized protein 45.9 16 0.00053 26.6 3.1 48 174-222 5-53 (100)
171 3lqv_P Splicing factor 3B subu 28.2 18 0.0006 21.1 0.7 9 27-35 30-38 (39)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=4.7e-24 Score=206.23 Aligned_cols=270 Identities=18% Similarity=0.171 Sum_probs=173.7
Q ss_pred CCCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
...+++.+.+. ++....++..+ +++|+ +|++++|.++.++ ..|+.+++|++|++++|.++.+|+..|+++++|
T Consensus 43 ~l~~l~~l~l~-~~~l~~l~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFK-NSTMRKLPAALLDSFRQVE--LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEE-SCEESEECTHHHHHCCCCS--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEec-CCchhhCChhHhcccccCc--EEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 34678899998 77777777764 78888 8999999988776 488899999999999999988866655899999
Q ss_pred cEEecCCCCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEE
Q 047903 192 YTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIW 266 (430)
Q Consensus 192 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 266 (430)
++|++++|.++.+|.. ++++++|++|++++|.+.. ++ +.+++|+.|.+.++..... . ++.+++|+.|+++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~---~-~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---D-LSLIPSLFHANVS 194 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC---C-GGGCTTCSEEECC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc---c-cccccccceeecc
Confidence 9999999998888877 5889999999999998887 54 4455566655554443222 2 4445666666665
Q ss_pred ccccccHHHHHHHhcCCCCCCEEEEecCC-------CCCCceEEEE---------EcccccCCcceEEEEccccCCccc-
Q 047903 267 GDLSYYQSLLSQSLCTLTCLESLKLVSES-------KMPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPK- 329 (430)
Q Consensus 267 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~- 329 (430)
++. .. .+....+|+.|+++++. .+++|+.|++ ++..+ ++|++|++++|.+...+.
T Consensus 195 ~n~--l~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 195 YNL--LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp SSC--CS-----EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESG
T ss_pred ccc--cc-----ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC-CCccEEECCCCcCCCcChh
Confidence 553 10 11222334444443310 0223333333 22333 444444444444332110
Q ss_pred ------------ccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCC
Q 047903 330 ------------SRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLN 397 (430)
Q Consensus 330 ------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 397 (430)
...-....++.....+++|+.|+++++ .+..++...+.+++|++|++++|+ +..+| +..+++|+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~ 342 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLK 342 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCS
T ss_pred HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC--chhhccCC
Confidence 000000122233456788888888873 566665555667888888888865 66665 67788999
Q ss_pred EEEEecCh
Q 047903 398 KFNCWWPQ 405 (430)
Q Consensus 398 ~L~l~~~~ 405 (430)
+|++++|+
T Consensus 343 ~L~l~~N~ 350 (390)
T 3o6n_A 343 NLTLSHND 350 (390)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 99999887
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=5.4e-24 Score=211.30 Aligned_cols=270 Identities=20% Similarity=0.152 Sum_probs=200.0
Q ss_pred CCCCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 116 SRKNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
.+..++.|.+. ++.+..+. ..+ +++|+ +|++++|.++.+ |..|+++++|++|++++|.++.+|...|+++++|
T Consensus 30 ~~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 30 IPTETRLLDLG-KNRIKTLNQDEFASFPHLE--ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp CCTTCSEEECC-SSCCCEECTTTTTTCTTCC--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCCcEEECC-CCccceECHhHccCCCCCC--EEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 35678899998 66666554 344 78888 899999988866 6788899999999999999998887766899999
Q ss_pred cEEecCCCCcccc-chhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEE
Q 047903 192 YTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIW 266 (430)
Q Consensus 192 ~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 266 (430)
++|++++|.+..+ |..+.++++|++|++++|.+.. ++ ..+++|+.|.+..+......... +..+++|+.|++.
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~ 184 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTEA-LSHLHGLIVLRLR 184 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCCHHH-HTTCTTCCEEEEE
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccChhH-hcccCCCcEEeCC
Confidence 9999999988866 4458889999999999998877 44 56677777777666554444455 8888999999998
Q ss_pred ccccccHHHHHHHhcCCCCCCEEEEecCCC----------CCCceEEEE-----------EcccccCCcceEEEEccccC
Q 047903 267 GDLSYYQSLLSQSLCTLTCLESLKLVSESK----------MPTLSKIVL-----------VEYQFPPRLTHLSFSNTELM 325 (430)
Q Consensus 267 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----------~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~ 325 (430)
++. .....+..+..+++|+.|+++++.. ..+|+.|++ .+..+ ++|+.|+|++|.+.
T Consensus 185 ~n~--i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 185 HLN--INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-VYLRFLNLSYNPIS 261 (477)
T ss_dssp SCC--CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC-TTCCEEECCSSCCC
T ss_pred CCc--CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc-cccCeeECCCCcCC
Confidence 886 3333345677888899999886110 225666666 23455 67777777777654
Q ss_pred CcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE-EcCCccccccEeEEeecCCCCcCCC-CCCCCCCCCEEEEec
Q 047903 326 EDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCAYLKKMPE-QPWCIKSLNKFNCWW 403 (430)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 403 (430)
..+ ......+++|+.|++++ +.+..+. .....+++|+.|++++| .++.+|. .+..+++|++|++++
T Consensus 262 ~~~----------~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 262 TIE----------GSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp EEC----------TTSCTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred ccC----------hhhccccccCCEEECCC-CccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence 321 01135678999999998 4566553 33457899999999997 5777765 468899999999998
Q ss_pred Ch
Q 047903 404 PQ 405 (430)
Q Consensus 404 ~~ 405 (430)
|+
T Consensus 330 N~ 331 (477)
T 2id5_A 330 NP 331 (477)
T ss_dssp SC
T ss_pred CC
Confidence 66
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.5e-24 Score=204.53 Aligned_cols=233 Identities=21% Similarity=0.190 Sum_probs=188.5
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
..+++ .|++++|.++.+|..++++++|++|++++|.++.+|..+ +++++|++|++++|.++.+|..++++++|++|+
T Consensus 80 ~~~l~--~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRV--ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCC--EEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccee--EEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 46777 999999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred cCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCC
Q 047903 219 FGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMP 298 (430)
Q Consensus 219 l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 298 (430)
+++|...+.+|..+... ..... ++.+++|++|++++|. .. .++..+..+++|+.|++++ .
T Consensus 157 L~~n~~~~~~p~~~~~~------------~~~~~-~~~l~~L~~L~L~~n~--l~-~lp~~l~~l~~L~~L~L~~----N 216 (328)
T 4fcg_A 157 IRACPELTELPEPLAST------------DASGE-HQGLVNLQSLRLEWTG--IR-SLPASIANLQNLKSLKIRN----S 216 (328)
T ss_dssp EEEETTCCCCCSCSEEE------------C-CCC-EEESTTCCEEEEEEEC--CC-CCCGGGGGCTTCCEEEEES----S
T ss_pred CCCCCCccccChhHhhc------------cchhh-hccCCCCCEEECcCCC--cC-cchHhhcCCCCCCEEEccC----C
Confidence 99988777576322211 11123 6667888888888875 22 5566677888888888885 2
Q ss_pred CceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEe
Q 047903 299 TLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIIN 378 (430)
Q Consensus 299 ~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 378 (430)
.+..+.-.+..+ ++|++|++++|.+... ++.....+++|+.|++++++....++...+.+++|+.|+++
T Consensus 217 ~l~~l~~~l~~l-~~L~~L~Ls~n~~~~~----------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 217 PLSALGPAIHHL-PKLEELDLRGCTALRN----------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp CCCCCCGGGGGC-TTCCEEECTTCTTCCB----------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCcCchhhccC-CCCCEEECcCCcchhh----------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 333332245677 8999999999886542 22335678999999999988888888777889999999999
Q ss_pred ecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 379 PCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 379 ~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+|+.++.+|..+.++++|+.+++....
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCchhhccHHHhhccCceEEeCCHHH
Confidence 999999999999999999999887543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=2.8e-24 Score=225.35 Aligned_cols=108 Identities=13% Similarity=0.056 Sum_probs=63.8
Q ss_pred CCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCC
Q 047903 312 PRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPW 391 (430)
Q Consensus 312 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~ 391 (430)
++|+.|++++|.+... ++...+.+++|+.|+++++.-...+|...+.+++|+.|++++|.....+|..+.
T Consensus 632 ~~L~~LdLs~N~l~g~----------ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGY----------IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp BCCCEEECCSSCCBSC----------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccccEEECcCCccccc----------CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 5566666666665432 122345677888888887433335676677888999999998876668888888
Q ss_pred CCCCCCEEEEecChH--------HH------------------HHHhhhccCccceeeecccCC
Q 047903 392 CIKSLNKFNCWWPQL--------EL------------------RQKLREFEDKEQYGIQLYPYG 429 (430)
Q Consensus 392 ~l~~L~~L~l~~~~~--------~~------------------~~~~~~~~~~~~~~i~~ip~~ 429 (430)
.+++|++|++++|+- .+ ...+...++++|++|+|+|.+
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 999999999876530 00 114555678899999999864
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-23 Score=213.76 Aligned_cols=270 Identities=18% Similarity=0.167 Sum_probs=166.7
Q ss_pred CCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY 192 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~ 192 (430)
..+++.+.+. ++....++..+ +++|+ +|++++|.++.++ ..|+.+++|++|++++|.++.+|+..|+++++|+
T Consensus 50 l~~l~~l~l~-~~~l~~lp~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFK-NSTMRKLPAALLDSFRQVE--LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEES-SCEESEECTHHHHHCCCCS--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEee-CCCCCCcCHHHHccCCCCc--EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3567788887 66666666654 67777 8888888887665 4788888888888888888877766558888888
Q ss_pred EEecCCCCccccchh-hccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903 193 TLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 268 (430)
Q Consensus 193 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 268 (430)
+|+|++|.++.+|.. ++++++|++|++++|.+.+..| +.+++|+.|.+.++..... . ++.+++|+.|+++++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D-LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---C-GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---C-hhhhhhhhhhhcccC
Confidence 888888888888776 4788888888888888877223 3445555555444432211 2 444566666666555
Q ss_pred ccccHHHHHHHhcCCCCCCEEEEecCC-------CCCCceEEEE---------EcccccCCcceEEEEccccCCccc---
Q 047903 269 LSYYQSLLSQSLCTLTCLESLKLVSES-------KMPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPK--- 329 (430)
Q Consensus 269 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~--- 329 (430)
. .. .+....+|+.|+++++. .+++|+.|.+ ++..+ ++|+.|+|++|.+...+.
T Consensus 203 ~--l~-----~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 203 L--LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp C--CS-----EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGG
T ss_pred c--cc-----cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHHh
Confidence 3 10 12223344444444310 0223343333 23334 444555554444433210
Q ss_pred ----------ccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEE
Q 047903 330 ----------SRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKF 399 (430)
Q Consensus 330 ----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 399 (430)
........++.....+++|+.|++++ +.+..++...+.+++|+.|++++|. +..+| +..+++|+.|
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L 350 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNL 350 (597)
T ss_dssp TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEE
T ss_pred cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEE
Confidence 00000112233345578888888887 4566666555668888888888865 56665 6678899999
Q ss_pred EEecCh
Q 047903 400 NCWWPQ 405 (430)
Q Consensus 400 ~l~~~~ 405 (430)
++++|+
T Consensus 351 ~l~~N~ 356 (597)
T 3oja_B 351 TLSHND 356 (597)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 999887
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=9.9e-23 Score=202.21 Aligned_cols=266 Identities=17% Similarity=0.138 Sum_probs=205.1
Q ss_pred eEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCccc-ChHhhhcCCCccEEecCC
Q 047903 121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~ 198 (430)
+.+... +.....+|..+.++++ +|++++|.++.++ ..|.++++|++|++++|.++.+ |..+ +++++|++|+|++
T Consensus 14 ~~v~c~-~~~l~~ip~~~~~~l~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCH-RKRFVAVPEGIPTETR--LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECC-SCCCSSCCSCCCTTCS--EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCS
T ss_pred CEEEeC-CCCcCcCCCCCCCCCc--EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCC
Confidence 345555 5566668887788999 9999999999775 6899999999999999999988 4555 9999999999999
Q ss_pred CCccccchh-hccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHH
Q 047903 199 SYIDHTADE-FWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQS 274 (430)
Q Consensus 199 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 274 (430)
|.++.+|.. +.++++|++|++++|.+....| ..+++|+.|.+.++......+.. +..+++|++|++.++. ...
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--l~~ 166 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCN--LTS 166 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCC--CSS
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCc--Ccc
Confidence 999999876 7899999999999999988334 56677777777665544445556 8999999999999996 444
Q ss_pred HHHHHhcCCCCCCEEEEecCC----------CCCCceEEEEE----c-------ccccCCcceEEEEccccCCccccccc
Q 047903 275 LLSQSLCTLTCLESLKLVSES----------KMPTLSKIVLV----E-------YQFPPRLTHLSFSNTELMEDPKSRAS 333 (430)
Q Consensus 275 ~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l~----~-------~~lp~~L~~L~L~~~~l~~~~~~~~~ 333 (430)
..+..+..+++|+.|+++++. .+++|+.|++. + ... .+|+.|++++|.+...+.
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~---- 241 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPY---- 241 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCH----
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCH----
Confidence 445678899999999998721 05577777661 1 122 377888888887654320
Q ss_pred CCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 334 SSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 334 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
.....+++|+.|++++ +.+..++.. ...+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 242 ------~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 242 ------LAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ------HHHTTCTTCCEEECCS-SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ------HHhcCccccCeeECCC-CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 1235688999999998 446655432 3568999999999976444457788999999999999986
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.8e-23 Score=214.52 Aligned_cols=268 Identities=15% Similarity=0.118 Sum_probs=152.7
Q ss_pred CCCCeeEEEEeecCC-Cccccccc--cCcceEEEEEecCCc-cc--ccccccccc------cCCceeecCCCCCcccCh-
Q 047903 116 SRKNVKRINVFEKQS-DFAHLDDY--DSHMHSLVLDLGSLV-LI--HYLSGIENL------FLLRYLKLNIPSLKSLPS- 182 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~-~~~~~~~~--~~~L~~L~L~l~~~~-l~--~lp~~~~~l------~~L~~L~L~~~~i~~lp~- 182 (430)
...++++|.+. ++. ...+|+.+ +++|+ +|++++|. ++ .+|..++.+ ++|++|++++|+++.+|.
T Consensus 247 ~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~--~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 247 NLKDLTDVEVY-NCPNLTKLPTFLKALPEMQ--LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp GCTTCCEEEEE-CCTTCSSCCTTTTTCSSCC--EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred ccCCCCEEEec-CCcCCccChHHHhcCCCCC--EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 45678888888 544 44566666 77888 88888887 77 477777766 788888888888888887
Q ss_pred -HhhhcCCCccEEecCCCCcc-ccchhhccCcccceeecCCcccCCCcC---ccCCC-CcccceeecCCCCcchhhhcCC
Q 047903 183 -PLLSNLLNLYTLDMPFSYID-HTADEFWKMNNLRHLNFGSITLPAHPR---KYCRS-LENLNFISALHPCCCTEDILGR 256 (430)
Q Consensus 183 -~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~-L~~L~~~~~~~~~~~~~~~l~~ 256 (430)
.+ +++++|++|++++|.+. .+| .++++++|++|++++|.+.. +| ..+++ |+.|.+.++... ..+.. ++.
T Consensus 324 ~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~ 398 (636)
T 4eco_A 324 TSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNI-FDA 398 (636)
T ss_dssp HHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCSSCCS-SCCSC-CCT
T ss_pred hhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccCCcCc-ccchh-hhh
Confidence 66 88888888888888777 777 67777777777777777764 66 44444 555555444432 22222 333
Q ss_pred CC--CCceEEEEccccccHHHHHHHhc-------CCCCCCEEEEecCC--C--------CCCceEEEE---Eccccc---
Q 047903 257 LP--NLRNLRIWGDLSYYQSLLSQSLC-------TLTCLESLKLVSES--K--------MPTLSKIVL---VEYQFP--- 311 (430)
Q Consensus 257 l~--~L~~L~l~~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~--~--------~~~L~~L~l---~~~~lp--- 311 (430)
++ +|+.|++++|. .....+..+. .+.+|+.|+++++. . +++|+.|++ .+..+|
T Consensus 399 ~~l~~L~~L~Ls~N~--l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 399 KSVSVMSAIDFSYNE--IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp TCSSCEEEEECCSSC--TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred cccCccCEEECcCCc--CCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 32 55666666554 3333333333 44455555555411 0 234444444 011110
Q ss_pred -----------CCcceEEEEccccCCcccccccCCCeEEEcCC--CCCcccEEEEeeCCCCCceEEcCCccccccEeEEe
Q 047903 312 -----------PRLTHLSFSNTELMEDPKSRASSSRKLTCGSD--GFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIIN 378 (430)
Q Consensus 312 -----------~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 378 (430)
++|+.|++++|.+...| .... .+++|+.|++++ +.+..++...+.+++|+.|+++
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-----------~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLTKLS-----------DDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCCBCC-----------GGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECC
T ss_pred hccccccccccCCccEEECcCCcCCccC-----------hhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECC
Confidence 15666666666554322 1111 445555555555 3344444444445555555553
Q ss_pred e------cCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 379 P------CAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 379 ~------c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+ |.....+|..+..+++|++|++++|.
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 2 22233445555555555555555544
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=4.2e-23 Score=203.62 Aligned_cols=281 Identities=17% Similarity=0.157 Sum_probs=159.3
Q ss_pred CCCCeeEEEEeecCCCccc-cccc--cCcceEEEEEecCCccc-ccc-cccccccCCceeecCCCCCccc-ChHhhhcCC
Q 047903 116 SRKNVKRINVFEKQSDFAH-LDDY--DSHMHSLVLDLGSLVLI-HYL-SGIENLFLLRYLKLNIPSLKSL-PSPLLSNLL 189 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~-~~~~--~~~L~~L~L~l~~~~l~-~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~ 189 (430)
.++++++|.+. ++.+..+ +..+ +++|+ +|++++|.+. .++ ..|+++++|++|++++|.++.+ |..+ ++++
T Consensus 28 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~--~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLS-LNSIAELNETSFSRLQDLQ--FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLA 103 (455)
T ss_dssp CCTTCCEEECC-SSCCCEECTTTTSSCTTCC--EEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCT
T ss_pred CCCccCEEEec-CCccCcCChhHhccCcccc--EEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCcc
Confidence 34667777777 5555544 3444 67777 7777777765 443 5677777777777777777766 4444 7777
Q ss_pred CccEEecCCCCccc-cchh--hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhh----------
Q 047903 190 NLYTLDMPFSYIDH-TADE--FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTED---------- 252 (430)
Q Consensus 190 ~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~---------- 252 (430)
+|++|++++|.++. +|.. ++++++|++|++++|.+.+..| ..+++|+.|.+.++......+..
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 77777777777664 3443 6777777777777777776334 24455555554443321111111
Q ss_pred -----------------------hcCCCCCCceEEEEccccccHHHHHHHhcC---CCCCCEEEEecCC-----------
Q 047903 253 -----------------------ILGRLPNLRNLRIWGDLSYYQSLLSQSLCT---LTCLESLKLVSES----------- 295 (430)
Q Consensus 253 -----------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~---l~~L~~L~l~~~~----------- 295 (430)
.+..+++|++|+++++. .....+..+.. ..+|+.|+++.+.
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 01244678889988886 44444443322 2444444444200
Q ss_pred -----------CCCCceEEEE-----------EcccccCCcceEEEEccccCCccc---cc--------cc--CCCeE-E
Q 047903 296 -----------KMPTLSKIVL-----------VEYQFPPRLTHLSFSNTELMEDPK---SR--------AS--SSRKL-T 339 (430)
Q Consensus 296 -----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~~---~~--------~~--~~~~~-~ 339 (430)
.+++|+.|++ ++..+ ++|++|++++|.+...+. .. .. ....+ +
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred ccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 0123444443 23334 445555555544433210 00 00 00001 1
Q ss_pred EcCCCCCcccEEEEeeCCCCCce-EEcCCccccccEeEEeecCCCCcCCC-CCCCCCCCCEEEEecCh
Q 047903 340 CGSDGFPNLKVLHLKSMLWLEEW-TMGIGAMPKLECLIINPCAYLKKMPE-QPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 340 ~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 405 (430)
.....+++|++|++++ +.+..+ +...+.+++|++|++++| .++.+|. .+..+++|++|++++|+
T Consensus 341 ~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 RMFENLDKLEVLDLSY-NHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCcccCCEEECCC-CcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 1235577888888887 345554 333456788888888886 4666665 45778888888888766
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.1e-22 Score=194.64 Aligned_cols=240 Identities=20% Similarity=0.198 Sum_probs=157.6
Q ss_pred CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
..++++.|.+. ++.+..++. .+ +++|+ +|++++|.++.++ ..++++++|++|++++|.++.+|..+|+++++|
T Consensus 67 ~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 67 SFRQVELLNLN-DLQIEEIDTYAFAYAHTIQ--KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HCCCCSEEECT-TSCCCEECTTTTTTCTTCC--EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCcEEECC-CCcccccChhhccCCCCcC--EEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 34678888887 666655544 33 77777 8888888887665 457788888888888888888887766888888
Q ss_pred cEEecCCCCccccch-hhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCC-----------------------
Q 047903 192 YTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHP----------------------- 246 (430)
Q Consensus 192 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~----------------------- 246 (430)
++|++++|.+..++. .++++++|++|++++|.+.. ++ +.+++|+.|.+..+...
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence 888888887777654 47788888888888888776 55 55555544433222110
Q ss_pred ---------------CcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEccccc
Q 047903 247 ---------------CCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFP 311 (430)
Q Consensus 247 ---------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp 311 (430)
...... ++.+++|++|+++++. .....+..+..+++|+.|++++ ..++.++..+..+
T Consensus 223 ~~~~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~l- 294 (390)
T 3o6n_A 223 PVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISN----NRLVALNLYGQPI- 294 (390)
T ss_dssp CCCSSCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC--CCEEESGGGTTCSSCCEEECCS----SCCCEEECSSSCC-
T ss_pred cccccccEEECCCCCCcccHH-HcCCCCccEEECCCCc--CCCcChhHccccccCCEEECCC----CcCcccCcccCCC-
Confidence 011123 4445555555555553 2222334445555555555552 3344443344567
Q ss_pred CCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecC
Q 047903 312 PRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCA 381 (430)
Q Consensus 312 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 381 (430)
++|+.|++++|.+...| .....+++|+.|++++ +.+..++ .+.+++|+.|++++|+
T Consensus 295 ~~L~~L~L~~n~l~~~~-----------~~~~~l~~L~~L~L~~-N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 295 PTLKVLDLSHNHLLHVE-----------RNQPQFDRLENLYLDH-NSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TTCCEEECCSSCCCCCG-----------GGHHHHTTCSEEECCS-SCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCEEECCCCcceecC-----------ccccccCcCCEEECCC-CccceeC--chhhccCCEEEcCCCC
Confidence 88899999988875433 1124589999999998 4566664 5679999999999976
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=9.2e-23 Score=213.71 Aligned_cols=278 Identities=12% Similarity=0.076 Sum_probs=175.6
Q ss_pred CCCCeeEEEEeecCCCcc------------------ccccc----cCcceEEEEEecCCccc-ccccccccccCCceeec
Q 047903 116 SRKNVKRINVFEKQSDFA------------------HLDDY----DSHMHSLVLDLGSLVLI-HYLSGIENLFLLRYLKL 172 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~------------------~~~~~----~~~L~~L~L~l~~~~l~-~lp~~~~~l~~L~~L~L 172 (430)
...+++.|.+. ++.... +|+.+ +++|+ +|++++|.+. .+|..++++++|++|++
T Consensus 446 ~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~--~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 446 RLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT--DVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC--EEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred cCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhhhccCCCCC--EEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 45678889988 666655 66654 56666 8888888855 78888888889999999
Q ss_pred CCCC-Ccc--cChHhhhcCC-------CccEEecCCCCccccch--hhccCcccceeecCCcccCCCcC--ccCCCCccc
Q 047903 173 NIPS-LKS--LPSPLLSNLL-------NLYTLDMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPAHPR--KYCRSLENL 238 (430)
Q Consensus 173 ~~~~-i~~--lp~~i~~~L~-------~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L 238 (430)
++|+ ++. +|..+ ++++ +|++|++++|.+..+|. .++++++|++|++++|.+.. +| +.+++|+.|
T Consensus 523 s~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp~~~~L~~L~~L 600 (876)
T 4ecn_A 523 ACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-LEAFGTNVKLTDL 600 (876)
T ss_dssp TTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB-CCCCCTTSEESEE
T ss_pred cCCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc-chhhcCCCcceEE
Confidence 9887 774 78777 6665 88899998888888888 78888889999888888884 88 556666666
Q ss_pred ceeecCCCCcchhhhcCCCCC-CceEEEEccccccHHHHHHHhcCCC--CCCEEEEecC---CC------------CCCc
Q 047903 239 NFISALHPCCCTEDILGRLPN-LRNLRIWGDLSYYQSLLSQSLCTLT--CLESLKLVSE---SK------------MPTL 300 (430)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~---~~------------~~~L 300 (430)
.+..+... ..+.. +..+++ |+.|++++|. .. .+|..+..+. +|+.|+++++ +. .++|
T Consensus 601 ~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~--L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 601 KLDYNQIE-EIPED-FCAFTDQVEGLGFSHNK--LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ECCSSCCS-CCCTT-SCEECTTCCEEECCSSC--CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ECcCCccc-cchHH-HhhccccCCEEECcCCC--CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 66555543 44555 777887 8888888885 22 4444444443 3777777651 11 1256
Q ss_pred eEEEE-----------EcccccCCcceEEEEccccCCccccccc----------CCC----------eEEEcCC--CCCc
Q 047903 301 SKIVL-----------VEYQFPPRLTHLSFSNTELMEDPKSRAS----------SSR----------KLTCGSD--GFPN 347 (430)
Q Consensus 301 ~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~~~~~~----------~~~----------~~~~~~~--~~~~ 347 (430)
+.|++ .+..+ ++|+.|+|++|.+...|..... ... .++.... .+++
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATG-SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTT-CCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTT
T ss_pred CEEEccCCcCCccCHHHHccC-CCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCC
Confidence 66665 11244 6677777777766543310000 000 0111111 4555
Q ss_pred ccEEEEeeCCCCCceEEcCCccccccEeEEee------cCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 348 LKVLHLKSMLWLEEWTMGIGAMPKLECLIINP------CAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 348 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
|+.|++++ +.+..++...+.+++|+.|++++ |.....+|..+.++++|++|++++|.
T Consensus 755 L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 755 LSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 66666655 33444444444555566665544 32334455555555666666665555
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.9e-22 Score=191.70 Aligned_cols=260 Identities=16% Similarity=0.164 Sum_probs=125.8
Q ss_pred CCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD 195 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~ 195 (430)
.++++++.+. ++....++.-. +++|+ +|++++|.++.++. ++.+++|++|++++|.++.+| .+ .++++|++|+
T Consensus 43 l~~L~~L~l~-~~~i~~~~~~~~~~~L~--~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~-~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVA-GEKVASIQGIEYLTNLE--YLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-AL-QNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECC-SSCCCCCTTGGGCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG-TTCTTCSEEE
T ss_pred cccccEEEEe-CCccccchhhhhcCCcc--EEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HH-cCCCcCCEEE
Confidence 3455666666 44444343311 56666 66666666665555 566666666666666666554 34 6666666666
Q ss_pred cCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903 196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ 273 (430)
Q Consensus 196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 273 (430)
+++|.+..+|. +..+++|++|++++|.....++ ..+++|+.|.+.++.. ..... ++.+++|++|+++++. ..
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~-~~~l~~L~~L~l~~n~--l~ 190 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV--KDVTP-IANLTDLYSLSLNYNQ--IE 190 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC--CCCGG-GGGCTTCSEEECTTSC--CC
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc--CCchh-hccCCCCCEEEccCCc--cc
Confidence 66666666555 5666666666666664333233 4455555554444332 22222 4455555555555553 11
Q ss_pred HHHHHHhcCCCCCCEEEEecCCC--------CCCceEEEE---------EcccccCCcceEEEEccccCCcccccccCCC
Q 047903 274 SLLSQSLCTLTCLESLKLVSESK--------MPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPKSRASSSR 336 (430)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~~~~--------~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~ 336 (430)
.++. +..+++|+.|+++++.- +++|+.|++ .+..+ ++|++|++++|.+...+
T Consensus 191 -~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~~-------- 259 (347)
T 4fmz_A 191 -DISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANL-SQLTWLEIGTNQISDIN-------- 259 (347)
T ss_dssp -CCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTC-TTCCEEECCSSCCCCCG--------
T ss_pred -cccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcC-CCCCEEECCCCccCCCh--------
Confidence 1111 44445555555543110 233333333 12344 55555555555543321
Q ss_pred eEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 337 KLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 337 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
....+++|+.|+++++ .+..++ ....+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 260 ----~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 260 ----AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ----GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ----hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 1234445555555542 233331 12334455555555543222233334444455555555444
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3e-22 Score=190.38 Aligned_cols=259 Identities=15% Similarity=0.177 Sum_probs=186.6
Q ss_pred CCCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L 194 (430)
..+++++|.+. ++.+..++.-. +++|+ +|++++|.++.++ .++.+++|++|++++|.++.+|. + .++++|++|
T Consensus 64 ~~~~L~~L~l~-~n~i~~~~~~~~l~~L~--~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~-~~l~~L~~L 137 (347)
T 4fmz_A 64 YLTNLEYLNLN-GNQITDISPLSNLVKLT--NLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-L-ANLTKMYSL 137 (347)
T ss_dssp GCTTCCEEECC-SSCCCCCGGGTTCTTCC--EEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-G-TTCTTCCEE
T ss_pred hcCCccEEEcc-CCccccchhhhcCCcCC--EEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-h-ccCCceeEE
Confidence 46778899988 66666555522 88888 8888888888765 58888899999999988888866 5 888888888
Q ss_pred ecCCC-CccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccc
Q 047903 195 DMPFS-YIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSY 271 (430)
Q Consensus 195 ~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 271 (430)
++++| .+..++. +..+++|++|++++|.+.. ++ ..+++|+.|.+.++.. ..... +..+++|+.|++.++.
T Consensus 138 ~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~l~~n~-- 210 (347)
T 4fmz_A 138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQI--EDISP-LASLTSLHYFTAYVNQ-- 210 (347)
T ss_dssp ECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECTTSCC--CCCGG-GGGCTTCCEEECCSSC--
T ss_pred ECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chhhccCCCCCEEEccCCcc--ccccc-ccCCCccceeecccCC--
Confidence 88888 4444444 7888888888888888777 54 6677777776665543 22333 5666777777777665
Q ss_pred cHHHHHHHhcCCCCCCEEEEecCC--------CCCCceEEEE---------EcccccCCcceEEEEccccCCcccccccC
Q 047903 272 YQSLLSQSLCTLTCLESLKLVSES--------KMPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPKSRASS 334 (430)
Q Consensus 272 ~~~~~~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~ 334 (430)
.....+ +..+++|+.|+++++. .+++|+.|++ .+..+ ++|++|++++|.+...+
T Consensus 211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~~------ 281 (347)
T 4fmz_A 211 ITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDL-TKLKMLNVGSNQISDIS------ 281 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTC-TTCCEEECCSSCCCCCG------
T ss_pred CCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcC-CCcCEEEccCCccCCCh------
Confidence 111111 5566677777776511 1456666666 45677 99999999999875532
Q ss_pred CCeEEEcCCCCCcccEEEEeeCCCCCce-EEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 335 SRKLTCGSDGFPNLKVLHLKSMLWLEEW-TMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 335 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
....+++|+.|+++++. +... +...+.+++|+.|++++|+ ++.++. +..+++|++|++++|+
T Consensus 282 ------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 ------VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp ------GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred ------hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 23578999999999854 4443 2334568999999999986 666655 8889999999999997
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=193.72 Aligned_cols=262 Identities=16% Similarity=0.109 Sum_probs=196.3
Q ss_pred EEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCc
Q 047903 123 INVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYI 201 (430)
Q Consensus 123 L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 201 (430)
.... ++....+|..+.++++ +|++++|.++.+|. .++++++|++|++++|.++.+++..|+++++|++|++++|.+
T Consensus 36 c~~~-~~~l~~iP~~~~~~L~--~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGS-SGSLNSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECC-STTCSSCCTTCCTTCC--EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCC-CCCcccccccccccCc--EEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 4444 6666678887788999 99999999998875 789999999999999999988655449999999999999999
Q ss_pred cccchh-hccCcccceeecCCcccCCCcC-----ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccccHH
Q 047903 202 DHTADE-FWKMNNLRHLNFGSITLPAHPR-----KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQS 274 (430)
Q Consensus 202 ~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-----~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 274 (430)
+.+|.. ++++++|++|++++|.+.. +| ..+++|+.|.+.++.. ....+.. ++.+++|++|+++++. ...
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~--l~~ 188 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD--LQS 188 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT--CCE
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC--cCc
Confidence 999877 8899999999999999887 76 3566777777776642 2233445 8889999999999986 444
Q ss_pred HHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEE
Q 047903 275 LLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353 (430)
Q Consensus 275 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 353 (430)
..+..+..+++|+.|++++ ..+..+.- ++..+ ++|+.|++++|.+...+. ..+ ......+.++.+++
T Consensus 189 ~~~~~l~~l~~L~~L~l~~----n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~------~~l-~~~~~~~~l~~l~L 256 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHM----KQHILLLEIFVDVT-SSVECLELRDTDLDTFHF------SEL-STGETNSLIKKFTF 256 (353)
T ss_dssp ECTTTTTTCSEEEEEEEEC----SCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCC------C-------CCCCCCEEEE
T ss_pred cCHHHHhccccCCeecCCC----Cccccchhhhhhhc-ccccEEECCCCccccccc------ccc-ccccccchhhcccc
Confidence 4566788888999999985 22332211 23346 899999999998866431 111 11234567888888
Q ss_pred eeCCCCCc-----eEEcCCccccccEeEEeecCCCCcCCCCC-CCCCCCCEEEEecCh
Q 047903 354 KSMLWLEE-----WTMGIGAMPKLECLIINPCAYLKKMPEQP-WCIKSLNKFNCWWPQ 405 (430)
Q Consensus 354 ~~~~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~ 405 (430)
.++ .+.. ++...+.+++|+.|++++| .++.+|..+ .++++|++|++++|+
T Consensus 257 ~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 257 RNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 863 2322 2323356899999999997 578899875 899999999999876
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=199.19 Aligned_cols=103 Identities=21% Similarity=0.256 Sum_probs=76.9
Q ss_pred CCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903 118 KNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~ 193 (430)
+++++|.+. ++.+..++ +.+ +++|+ +|++++|.++.+ |..|+++++|++|++++|+++.+|.. .+++|++
T Consensus 21 ~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNIS-QNYISELWTSDILSLSKLR--ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKH 94 (520)
T ss_dssp TTCSEEECC-SSCCCCCCHHHHTTCTTCC--EEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSE
T ss_pred ccccEEECC-CCcccccChhhcccccccc--EEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccE
Confidence 678888888 66665554 334 77788 888888887755 56788888888888888888877763 6788888
Q ss_pred EecCCCCccc--cchhhccCcccceeecCCcccCC
Q 047903 194 LDMPFSYIDH--TADEFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 194 L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~ 226 (430)
|++++|.++. +|..++++++|++|++++|.+.+
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 8888887765 46678888888888888777654
No 15
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=7.7e-22 Score=199.81 Aligned_cols=120 Identities=18% Similarity=0.149 Sum_probs=91.0
Q ss_pred CCCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903 117 RKNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY 192 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~ 192 (430)
++++++|.+. ++.+..++ +.+ +++|+ +|++++|.++.+ |..|+++++|++|++++|.++.+|.. .+++|+
T Consensus 51 ~~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~--~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~ 124 (562)
T 3a79_B 51 PPRTKALSLS-QNSISELRMPDISFLSELR--VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLR 124 (562)
T ss_dssp CTTCCEEECC-SSCCCCCCGGGTTTCTTCC--EEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCS
T ss_pred CCCcCEEECC-CCCccccChhhhccCCCcc--EEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCC
Confidence 4678888888 66666555 344 77888 888888888866 56788888899999999888888864 788899
Q ss_pred EEecCCCCccccc--hhhccCcccceeecCCcccCCCcC-ccCCCC--cccceeec
Q 047903 193 TLDMPFSYIDHTA--DEFWKMNNLRHLNFGSITLPAHPR-KYCRSL--ENLNFISA 243 (430)
Q Consensus 193 ~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L--~~L~~~~~ 243 (430)
+|++++|.++.+| ..++++++|++|++++|.+.. .. ..+++| +.|.+..+
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTSCEEEEEEEES
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCcccc-CchhhhhhceeeEEEeecc
Confidence 9999988888764 678888999999998888776 33 444444 55544443
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=7.1e-22 Score=201.36 Aligned_cols=240 Identities=20% Similarity=0.198 Sum_probs=166.1
Q ss_pred CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
...+++.|.+. ++.+..++. .+ +++|+ +|++++|.++.+| ..|+++++|++|++++|.++.+|..+|+++++|
T Consensus 73 ~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 73 SFRQVELLNLN-DLQIEEIDTYAFAYAHTIQ--KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HCCCCSEEECT-TSCCCEECTTTTTTCTTCC--EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCCcEEECC-CCCCCCCChHHhcCCCCCC--EEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 35678888888 666665554 44 77888 8888998888766 457888999999999998888888777889999
Q ss_pred cEEecCCCCccccch-hhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCC-----------------------
Q 047903 192 YTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHP----------------------- 246 (430)
Q Consensus 192 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~----------------------- 246 (430)
++|++++|.+..++. .++++++|++|++++|.+.+ +| +.+++|+.|.+.++...
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence 999999988887755 48888899999999888877 66 55666555443322110
Q ss_pred ---------------CcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEccccc
Q 047903 247 ---------------CCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFP 311 (430)
Q Consensus 247 ---------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp 311 (430)
...+.. ++.+++|+.|++++|. .....+..+..+++|+.|++++ ..+..++..+..+
T Consensus 229 ~~~~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~~~l- 300 (597)
T 3oja_B 229 PVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISN----NRLVALNLYGQPI- 300 (597)
T ss_dssp SCCSCCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC--CCEEESGGGTTCSSCCEEECTT----SCCCEEECSSSCC-
T ss_pred ccCCCCCEEECCCCCCCCChh-hccCCCCCEEECCCCc--cCCCCHHHhcCccCCCEEECCC----CCCCCCCcccccC-
Confidence 011233 4455555555555554 3333344455555555555552 3444444344567
Q ss_pred CCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecC
Q 047903 312 PRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCA 381 (430)
Q Consensus 312 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 381 (430)
++|+.|+|++|.+...| .....+++|+.|++++ +.+..++ .+.+++|+.|++++|+
T Consensus 301 ~~L~~L~Ls~N~l~~i~-----------~~~~~l~~L~~L~L~~-N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 301 PTLKVLDLSHNHLLHVE-----------RNQPQFDRLENLYLDH-NSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TTCCEEECCSSCCCCCG-----------GGHHHHTTCSEEECCS-SCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCcEEECCCCCCCccC-----------cccccCCCCCEEECCC-CCCCCcC--hhhcCCCCEEEeeCCC
Confidence 88999999999876433 1234689999999998 4566554 5679999999999987
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.4e-21 Score=193.31 Aligned_cols=268 Identities=19% Similarity=0.208 Sum_probs=186.0
Q ss_pred CCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD 195 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~ 195 (430)
..+++.|.+. ++....++.-. +++|+ +|++++|.++.+|. ++++++|++|++++|.++.+++ + +++++|++|+
T Consensus 45 l~~l~~L~l~-~~~i~~l~~~~~l~~L~--~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQAD-RLGIKSIDGVEYLNNLT--QINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECC-SSCCCCCTTGGGCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEE
T ss_pred hccccEEecC-CCCCccCcchhhhcCCC--EEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCCEEE
Confidence 3578899988 76666565423 88999 99999999998877 8999999999999999998876 6 9999999999
Q ss_pred cCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903 196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ 273 (430)
Q Consensus 196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 273 (430)
+++|.++.+|. ++++++|++|++++|.+.. +| +.+++|+.|.+... ...... ++.+++|+.|+++++.- .
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~---~~~~~~-~~~l~~L~~L~l~~n~l--~ 190 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQ---VTDLKP-LANLTTLERLDISSNKV--S 190 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEES---CCCCGG-GTTCTTCCEEECCSSCC--C
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCc---ccCchh-hccCCCCCEEECcCCcC--C
Confidence 99999998886 8999999999999999888 77 77777887776432 223345 77788888888887751 1
Q ss_pred HHHHHHhcCCCCCCEEEEecCC---C-----CCCceEEEE---------EcccccCCcceEEEEccccCCccc-ccccCC
Q 047903 274 SLLSQSLCTLTCLESLKLVSES---K-----MPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPK-SRASSS 335 (430)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~~~---~-----~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~-~~~~~~ 335 (430)
. + ..+..+++|+.|+++++. . +++|+.|++ .+..+ ++|+.|++++|.+...+. ......
T Consensus 191 ~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~l~~L 267 (466)
T 1o6v_A 191 D-I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAPLSGLTKL 267 (466)
T ss_dssp C-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred C-C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCccccchhhhcCCCC
Confidence 1 1 235667777777777521 0 456666665 33445 677777777776654321 000000
Q ss_pred CeEE---------EcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 336 RKLT---------CGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 336 ~~~~---------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
..+. .....+++|+.|++++ +.+..++. .+.+++|+.|++++|. +..++. +..+++|++|++++|+
T Consensus 268 ~~L~l~~n~l~~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 268 TELKLGANQISNISPLAGLTALTNLELNE-NQLEDISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp SEEECCSSCCCCCGGGTTCTTCSEEECCS-SCCSCCGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSC
T ss_pred CEEECCCCccCccccccCCCccCeEEcCC-CcccCchh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCc
Confidence 0000 0134566777777776 33444432 3567788888888774 555443 6678888888888876
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=6.9e-22 Score=199.58 Aligned_cols=281 Identities=18% Similarity=0.143 Sum_probs=188.0
Q ss_pred CCCeeEEEEeecCCCccc-cccc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903 117 RKNVKRINVFEKQSDFAH-LDDY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY 192 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~-~~~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~ 192 (430)
+..+++|.+. ++.+..+ +..+ +++|+ +|++++|.++.++ ..|+++++|++|++++|.++.+|+..|+++++|+
T Consensus 25 ~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~--~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 25 TAAMKSLDLS-FNKITYIGHGDLRACANLQ--VLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CTTCCEEECC-SSCCCEECSSTTSSCTTCC--EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCCccEEECc-CCccCccChhhhhcCCccc--EEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 4679999999 6666555 3445 88899 9999999998666 6899999999999999999998877449999999
Q ss_pred EEecCCCCccc--cchhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEE
Q 047903 193 TLDMPFSYIDH--TADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIW 266 (430)
Q Consensus 193 ~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 266 (430)
+|++++|.++. +|..++++++|++|++++|...+.+| ..+++|+.|.+.++......+.. ++.+++|++|++.
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecc
Confidence 99999998885 46678999999999999998544466 55666777777666654455666 7888888888888
Q ss_pred ccccccHHHHHHHhcCCCCCCEEEEecC---C----------CCCCceEEEE---------------Ecccc--------
Q 047903 267 GDLSYYQSLLSQSLCTLTCLESLKLVSE---S----------KMPTLSKIVL---------------VEYQF-------- 310 (430)
Q Consensus 267 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~---~----------~~~~L~~L~l---------------~~~~l-------- 310 (430)
.+. ........+..+++|+.|+++++ + .+++|+.|.+ .+..+
T Consensus 181 ~n~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 181 LSE--SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp CSB--STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cCc--ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 775 22222223345677777777651 1 0233444433 00011
Q ss_pred --------------------------------------------------cCCcceEEEEccccCCcccc---cccCCCe
Q 047903 311 --------------------------------------------------PPRLTHLSFSNTELMEDPKS---RASSSRK 337 (430)
Q Consensus 311 --------------------------------------------------p~~L~~L~L~~~~l~~~~~~---~~~~~~~ 337 (430)
.++|+.|++++|.+...|.. .....+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence 02344444444444333210 0000000
Q ss_pred EE--------------EcCCCCCcccEEEEeeCCCCCceEE---cCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEE
Q 047903 338 LT--------------CGSDGFPNLKVLHLKSMLWLEEWTM---GIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFN 400 (430)
Q Consensus 338 ~~--------------~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 400 (430)
+. .....+++|+.|++++ +.+..++. ..+.+++|++|++++| .++.+|..+..+++|++|+
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~ 416 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLN 416 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTT-SCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEE
T ss_pred EEccCCccccccccchhhhhccccCcEEEccC-CcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEE
Confidence 00 0134567788888877 34555432 2456888888888887 5778888888888888888
Q ss_pred EecCh
Q 047903 401 CWWPQ 405 (430)
Q Consensus 401 l~~~~ 405 (430)
+++|.
T Consensus 417 Ls~N~ 421 (549)
T 2z81_A 417 LSSTG 421 (549)
T ss_dssp CTTSC
T ss_pred CCCCC
Confidence 88876
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1.8e-22 Score=199.12 Aligned_cols=259 Identities=17% Similarity=0.174 Sum_probs=172.5
Q ss_pred CCCCCCCCCeeEEEEeecCCCc-ccc-ccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcc-cChH-
Q 047903 111 DPKGKSRKNVKRINVFEKQSDF-AHL-DDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKS-LPSP- 183 (430)
Q Consensus 111 ~~~~~~~~~~r~L~l~~~~~~~-~~~-~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~-lp~~- 183 (430)
...+....++++|.+. ++... .++ +.+ +++|+ +|++++|.++.+ |..|+++++|++|++++|.++. +|..
T Consensus 47 ~~~~~~l~~L~~L~L~-~n~~~~~i~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 123 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVE-QQTPGLVIRNNTFRGLSSLI--ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123 (455)
T ss_dssp TTTTSSCTTCCEEECC-CCSTTCEECTTTTTTCTTCC--EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSS
T ss_pred hhHhccCccccEEECc-CCcccceECcccccccccCC--EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcc
Confidence 3344567789999998 65543 343 334 78888 999999998855 6788999999999999999885 3333
Q ss_pred hhhcCCCccEEecCCCCcccc-chh-hccCcccceeecCCcccCCCcCccC-----------------------------
Q 047903 184 LLSNLLNLYTLDMPFSYIDHT-ADE-FWKMNNLRHLNFGSITLPAHPRKYC----------------------------- 232 (430)
Q Consensus 184 i~~~L~~L~~L~L~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~lp~~l----------------------------- 232 (430)
.|+++++|++|++++|.+..+ |.. ++++++|++|++++|.+.+..|..+
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~ 203 (455)
T 3v47_A 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203 (455)
T ss_dssp TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH
T ss_pred cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccc
Confidence 238999999999999988876 554 7889999999999998877323211
Q ss_pred --------CCCcccceeecCCCCcchhhhcC---------------------------------------CCCCCceEEE
Q 047903 233 --------RSLENLNFISALHPCCCTEDILG---------------------------------------RLPNLRNLRI 265 (430)
Q Consensus 233 --------~~L~~L~~~~~~~~~~~~~~~l~---------------------------------------~l~~L~~L~l 265 (430)
++|+.|.+.++......+.. +. ..++|+.|++
T Consensus 204 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 282 (455)
T 3v47_A 204 KCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282 (455)
T ss_dssp HHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred ccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEe
Confidence 33444444333221111111 10 1145666666
Q ss_pred EccccccHHHHHHHhcCCCCCCEEEEecCC----------CCCCceEEEE-----------EcccccCCcceEEEEcccc
Q 047903 266 WGDLSYYQSLLSQSLCTLTCLESLKLVSES----------KMPTLSKIVL-----------VEYQFPPRLTHLSFSNTEL 324 (430)
Q Consensus 266 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l 324 (430)
+++. .....+..+..+++|+.|+++++. .+++|+.|++ ++..+ ++|++|++++|.+
T Consensus 283 ~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l 359 (455)
T 3v47_A 283 SKSK--IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL-DKLEVLDLSYNHI 359 (455)
T ss_dssp CSSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC-TTCCEEECCSSCC
T ss_pred cCcc--ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc-ccCCEEECCCCcc
Confidence 6665 333444556667777777776511 0345566555 34566 7888888888876
Q ss_pred CCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcC-CccccccEeEEeecCCCCcCC
Q 047903 325 MEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGI-GAMPKLECLIINPCAYLKKMP 387 (430)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~lp 387 (430)
...+ +.....+++|++|++++ +.+..++... +.+++|+.|++++|+--...|
T Consensus 360 ~~~~----------~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 360 RALG----------DQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEC----------TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccC----------hhhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 4321 11245789999999998 5677776543 678999999999987544444
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=6.9e-22 Score=202.00 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=110.2
Q ss_pred CCCCeeEEEEeecCCCccc-cccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCccc-ChHhhhcCCC
Q 047903 116 SRKNVKRINVFEKQSDFAH-LDDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLN 190 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~-~~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~ 190 (430)
.+..+++|.+. ++.+..+ +..+ +++|+ +|++++|.+..+ |..|+++++|++|++++|.++.+ |..+ +++++
T Consensus 31 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~--~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 106 (606)
T 3t6q_A 31 LPNSTECLEFS-FNVLPTIQNTTFSRLINLT--FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPKA 106 (606)
T ss_dssp SCTTCCEEECT-TCCCSEECTTTSTTCTTCS--EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT-SSCTT
T ss_pred CCCcCcEEEcc-CCccCcCChhHhccCccce--EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh-ccccc
Confidence 45678888888 6666655 3444 77888 888888888755 57788888888888888888876 4445 88888
Q ss_pred ccEEecCCCCcccc-chhhccCcccceeecCCcccCCCc--C--ccCCCCcccceeecCCCCcchhhhcCCCCCCc--eE
Q 047903 191 LYTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSITLPAHP--R--KYCRSLENLNFISALHPCCCTEDILGRLPNLR--NL 263 (430)
Q Consensus 191 L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~l--p--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~--~L 263 (430)
|++|++++|.++.+ |..++++++|++|++++|.+.+ + | ..+++|+.|.+.++......+.. ++.+++|+ +|
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L 184 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSL 184 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEE
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhh-hhhhcccceeEE
Confidence 88888888888877 4558888888888888888887 4 4 44677777776666544444555 77888888 66
Q ss_pred EEEccc
Q 047903 264 RIWGDL 269 (430)
Q Consensus 264 ~l~~~~ 269 (430)
++.++.
T Consensus 185 ~l~~n~ 190 (606)
T 3t6q_A 185 NLNGND 190 (606)
T ss_dssp ECTTCC
T ss_pred ecCCCc
Confidence 666664
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.3e-22 Score=212.68 Aligned_cols=245 Identities=17% Similarity=0.143 Sum_probs=157.7
Q ss_pred EEEecCCccc-ccccccccc-cCCceeecCCCCCc-ccChHhhhcCCCccEEecCCCCcc-ccchh-hccCcccceeecC
Q 047903 146 VLDLGSLVLI-HYLSGIENL-FLLRYLKLNIPSLK-SLPSPLLSNLLNLYTLDMPFSYID-HTADE-FWKMNNLRHLNFG 220 (430)
Q Consensus 146 ~L~l~~~~l~-~lp~~~~~l-~~L~~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~-i~~L~~L~~L~l~ 220 (430)
+|++++|.++ .+|..+..+ ++|++|++++|.++ .+|..+ +++++|++|++++|.+. .+|.. ++++++|++|+++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 5555555555 555555543 66777777766666 445555 77777777777777665 66655 6667777777777
Q ss_pred CcccCCCcC---ccCC-CCcccceeecCCCCcchhhhcCC--CCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecC
Q 047903 221 SITLPAHPR---KYCR-SLENLNFISALHPCCCTEDILGR--LPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSE 294 (430)
Q Consensus 221 ~~~~~~~lp---~~l~-~L~~L~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 294 (430)
+|.+.+.+| ..++ +|+.|.+..+......+.. +.. +++|++|++.+|. .....+..+..+++|+.|+++++
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNG--FTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSE--EEEECCGGGGGCTTCCEEECCSS
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCc--cccccCHHHhcCCCCCEEECcCC
Confidence 776664455 2333 5555555444322223333 333 5666677666665 33445556666677777776651
Q ss_pred ---CC-------CCCceEEEE-----------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEE
Q 047903 295 ---SK-------MPTLSKIVL-----------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353 (430)
Q Consensus 295 ---~~-------~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 353 (430)
+. +++|+.|++ .+..+ ++|++|++++|.+... .+.....+++|+.|++
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~----------~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGE----------IPSGLSNCTNLNWISL 497 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSC----------CCGGGGGCTTCCEEEC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEEecCCcccCc----------CCHHHhcCCCCCEEEc
Confidence 11 345555555 23455 7788888888876432 1223456889999999
Q ss_pred eeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 354 KSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+++.-...++...+.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 9855444666667789999999999987667899999999999999999876
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=3.8e-23 Score=193.61 Aligned_cols=241 Identities=15% Similarity=0.158 Sum_probs=142.3
Q ss_pred CCeeEEEEeecCCCc---cccccc--cCcceEEEEEecC-Cccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCC
Q 047903 118 KNVKRINVFEKQSDF---AHLDDY--DSHMHSLVLDLGS-LVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLL 189 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~---~~~~~~--~~~L~~L~L~l~~-~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~ 189 (430)
.+++.|.+. ++... .++..+ +++|+ +|++++ |.+. .+|..++++++|++|++++|.++ .+|..+ ++++
T Consensus 50 ~~l~~L~L~-~~~l~~~~~~~~~l~~l~~L~--~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLS-GLNLPKPYPIPSSLANLPYLN--FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIK 125 (313)
T ss_dssp CCEEEEEEE-CCCCSSCEECCGGGGGCTTCS--EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCT
T ss_pred ceEEEEECC-CCCccCCcccChhHhCCCCCC--eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCC
Confidence 456666666 44433 344444 56666 666663 5554 55566666666666666666665 455555 6666
Q ss_pred CccEEecCCCCcc-ccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCC-CCceEEEEc
Q 047903 190 NLYTLDMPFSYID-HTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLP-NLRNLRIWG 267 (430)
Q Consensus 190 ~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~ 267 (430)
+|++|++++|.+. .+|..++++++|++|++++|.+.+ ..+.. ++.++ +|+.|++++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---------------------~~p~~-l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG---------------------AIPDS-YGSFSKLFTSMTISR 183 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE---------------------ECCGG-GGCCCTTCCEEECCS
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC---------------------cCCHH-HhhhhhcCcEEECcC
Confidence 6666666666555 456566666666666666666553 23334 55555 666666666
Q ss_pred cccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCC
Q 047903 268 DLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFP 346 (430)
Q Consensus 268 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (430)
+. .....+..+..++ |+.|++++ ..+....- .+..+ ++|+.|++++|.+...+ .....++
T Consensus 184 N~--l~~~~~~~~~~l~-L~~L~Ls~----N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~-----------~~~~~l~ 244 (313)
T 1ogq_A 184 NR--LTGKIPPTFANLN-LAFVDLSR----NMLEGDASVLFGSD-KNTQKIHLAKNSLAFDL-----------GKVGLSK 244 (313)
T ss_dssp SE--EEEECCGGGGGCC-CSEEECCS----SEEEECCGGGCCTT-SCCSEEECCSSEECCBG-----------GGCCCCT
T ss_pred Ce--eeccCChHHhCCc-ccEEECcC----CcccCcCCHHHhcC-CCCCEEECCCCceeeec-----------CcccccC
Confidence 54 3333444455554 66666653 12221100 34556 77777888777765322 0124567
Q ss_pred cccEEEEeeCCCCC-ceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 347 NLKVLHLKSMLWLE-EWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 347 ~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+|++|+++++ .+. .++...+.+++|+.|++++|.....+|.. ..+++|+.+++++++
T Consensus 245 ~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 245 NLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 7888888773 343 44444566788888888887644567764 677888888887776
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=2.6e-22 Score=205.86 Aligned_cols=265 Identities=17% Similarity=0.204 Sum_probs=211.1
Q ss_pred CCCCeeEEEEeecCC-Cc--cccccc--c------CcceEEEEEecCCccccccc--ccccccCCceeecCCCCCc-ccC
Q 047903 116 SRKNVKRINVFEKQS-DF--AHLDDY--D------SHMHSLVLDLGSLVLIHYLS--GIENLFLLRYLKLNIPSLK-SLP 181 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~-~~--~~~~~~--~------~~L~~L~L~l~~~~l~~lp~--~~~~l~~L~~L~L~~~~i~-~lp 181 (430)
..++++.|.+. ++. .. .+|..+ + ++|+ +|++++|.++.+|. .++++++|++|++++|.++ .+|
T Consensus 271 ~l~~L~~L~Ls-~n~~l~~~~lp~~~~~L~~~~~l~~L~--~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 271 ALPEMQLINVA-CNRGISGEQLKDDWQALADAPVGEKIQ--IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TCSSCCEEECT-TCTTSCHHHHHHHHHHHHHSGGGGTCC--EEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred cCCCCCEEECc-CCCCCccccchHHHHhhhccccCCCCC--EEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 46689999999 665 54 366665 4 8999 99999999999998 9999999999999999999 999
Q ss_pred hHhhhcCCCccEEecCCCCccccchhhccCcc-cceeecCCcccCCCcCc---c--CCCCcccceeecCCCCcchhhhcC
Q 047903 182 SPLLSNLLNLYTLDMPFSYIDHTADEFWKMNN-LRHLNFGSITLPAHPRK---Y--CRSLENLNFISALHPCCCTEDILG 255 (430)
Q Consensus 182 ~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~-L~~L~l~~~~~~~~lp~---~--l~~L~~L~~~~~~~~~~~~~~~l~ 255 (430)
.+ +++++|++|++++|.+..+|..++++++ |++|++++|.+.. +|. . +++|+.|.+.++......+.. +.
T Consensus 348 -~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~ 423 (636)
T 4eco_A 348 -AF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FD 423 (636)
T ss_dssp -CC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SC
T ss_pred -hh-CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhh-hc
Confidence 77 9999999999999999999999999999 9999999999996 882 2 336777777666654445555 66
Q ss_pred -------CCCCCceEEEEccccccHHHHH-HHhcCCCCCCEEEEecCCC----------CC-------CceEEEE-----
Q 047903 256 -------RLPNLRNLRIWGDLSYYQSLLS-QSLCTLTCLESLKLVSESK----------MP-------TLSKIVL----- 305 (430)
Q Consensus 256 -------~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~----------~~-------~L~~L~l----- 305 (430)
.+++|+.|++++|. .. .++ ..+..+++|+.|+++++.- .. +|+.|++
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~--l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQ--IS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSC--CC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred ccccccccCCCCCEEECcCCc--cC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 77899999999986 33 333 4456689999999987210 11 7888888
Q ss_pred -----Ecc--cccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeC------CCCCceEEcCCccccc
Q 047903 306 -----VEY--QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSM------LWLEEWTMGIGAMPKL 372 (430)
Q Consensus 306 -----~~~--~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------~~l~~~~~~~~~~~~L 372 (430)
.+. .+ ++|+.|++++|.+... +.....+++|+.|+++++ .-...++...+.+++|
T Consensus 501 ~~lp~~~~~~~l-~~L~~L~Ls~N~l~~i-----------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 501 TKLSDDFRATTL-PYLVGIDLSYNSFSKF-----------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp CBCCGGGSTTTC-TTCCEEECCSSCCSSC-----------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CccChhhhhccC-CCcCEEECCCCCCCCc-----------ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 333 77 8999999999988643 233457899999999642 2234455566789999
Q ss_pred cEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 373 ECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 373 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
++|++++|. ++.+|..+. ++|++|++++|+
T Consensus 569 ~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 569 TQLQIGSND-IRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CEEECCSSC-CCBCCSCCC--TTCCEEECCSCT
T ss_pred CEEECCCCc-CCccCHhHh--CcCCEEECcCCC
Confidence 999999986 599998765 899999999996
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2e-21 Score=183.32 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=192.0
Q ss_pred CeeEEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCccc-ChHhhhcCCCccEEec
Q 047903 119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDM 196 (430)
Q Consensus 119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L 196 (430)
+++.+.+. +.....++..+.++++ +|++++|.++.++. .|+++++|++|++++|.++.+ |..+ +++++|++|++
T Consensus 32 ~l~~l~~~-~~~l~~lp~~~~~~l~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCS-DLGLEKVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYL 107 (330)
T ss_dssp ETTEEECT-TSCCCSCCCSCCTTCC--EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEEC
T ss_pred CCeEEEec-CCCccccCccCCCCCe--EEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEEC
Confidence 46777777 6666667777788888 89999999987775 788999999999999999988 5556 99999999999
Q ss_pred CCCCccccchhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCC--cchhhhcCCCCCCceEEEEcccc
Q 047903 197 PFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPC--CCTEDILGRLPNLRNLRIWGDLS 270 (430)
Q Consensus 197 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~ 270 (430)
++|.++.+|..+. ++|++|++++|.+.. ++ ..+++|+.|.+..+.... ..+.. ++.+++|+.|++.++.
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~- 182 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTN- 182 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSC-
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCc-
Confidence 9999998887654 789999999999887 66 567777777666555321 33445 7888999999998885
Q ss_pred ccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCccc
Q 047903 271 YYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLK 349 (430)
Q Consensus 271 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 349 (430)
. ..++..+ .++|+.|++++ ..++.+.. ++..+ ++|+.|++++|.+...+ ......+++|+
T Consensus 183 -l-~~l~~~~--~~~L~~L~l~~----n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~ 243 (330)
T 1xku_A 183 -I-TTIPQGL--PPSLTELHLDG----NKITKVDAASLKGL-NNLAKLGLSFNSISAVD----------NGSLANTPHLR 243 (330)
T ss_dssp -C-CSCCSSC--CTTCSEEECTT----SCCCEECTGGGTTC-TTCCEEECCSSCCCEEC----------TTTGGGSTTCC
T ss_pred -c-ccCCccc--cccCCEEECCC----CcCCccCHHHhcCC-CCCCEEECCCCcCceeC----------hhhccCCCCCC
Confidence 1 1222222 26888888874 34554422 46677 89999999999875432 00134678999
Q ss_pred EEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCC-CC------CCCCCCEEEEecCh
Q 047903 350 VLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQ-PW------CIKSLNKFNCWWPQ 405 (430)
Q Consensus 350 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~------~l~~L~~L~l~~~~ 405 (430)
.|++++ +.+..++.....+++|++|++++|+ ++.+|.. +. ..++|+.++++++|
T Consensus 244 ~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 244 ELHLNN-NKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp EEECCS-SCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred EEECCC-CcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 999998 4677777667788999999999875 6666542 22 24788999999988
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3.8e-21 Score=189.24 Aligned_cols=263 Identities=17% Similarity=0.075 Sum_probs=179.0
Q ss_pred CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L 194 (430)
..++++|.+. ++.+..++ .+ +++|+ +|++++|.++.+| ++.+++|++|++++|.++.+| + +++++|++|
T Consensus 41 l~~L~~L~Ls-~n~l~~~~-~l~~l~~L~--~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCH-NSSITDMT-GIEKLTGLT--KLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECC-SSCCCCCT-TGGGCTTCS--EEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCCEE
T ss_pred cCCCCEEEcc-CCCcccCh-hhcccCCCC--EEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCCEE
Confidence 5678888888 66666555 44 78888 8888888888775 788888888888888888875 5 888888888
Q ss_pred ecCCCCccccchhhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903 195 DMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ 273 (430)
Q Consensus 195 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 273 (430)
++++|.++.+| ++++++|++|++++|.+.+ +| +.+++|+.|.+..+...... . ++.+++|+.|+++++. ..
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~--l~ 183 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKL--D-VTPQTQLTTLDCSFNK--IT 183 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCC--C-CTTCTTCCEEECCSSC--CC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCccccc--c-cccCCcCCEEECCCCc--cc
Confidence 88888888876 7888888888888888888 77 77777777776655432122 4 6777778888887775 11
Q ss_pred HHHHHHhcCCCCCCEEEEecCC-------CCCCceEEEE--------EcccccCCcceEEEEccccCCccccccc-----
Q 047903 274 SLLSQSLCTLTCLESLKLVSES-------KMPTLSKIVL--------VEYQFPPRLTHLSFSNTELMEDPKSRAS----- 333 (430)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l--------~~~~lp~~L~~L~L~~~~l~~~~~~~~~----- 333 (430)
. ++ +..+++|+.|+++++. .+++|+.|++ .+..+ ++|+.|++++|.+...+.....
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l-~~L~~L~l~~N~l~~~~~~~l~~L~~L 259 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPL-TQLTYFDCSVNPLTELDVSTLSKLTTL 259 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred e-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCcccc-CCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence 1 22 5666777777776511 0455566655 23455 6777777777776654421000
Q ss_pred ----------------CCCeEEEcCCCCCcccEEEEeeCCCCCceEEc--------CCccccccEeEEeecCCCCcCCCC
Q 047903 334 ----------------SSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG--------IGAMPKLECLIINPCAYLKKMPEQ 389 (430)
Q Consensus 334 ----------------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~~~~~~L~~L~l~~c~~l~~lp~~ 389 (430)
.... .....+++|+.|+++++..++.++.. ...+++|+.|++++| .++.++
T Consensus 260 ~l~~n~L~~L~l~~n~~~~~--~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~-- 334 (457)
T 3bz5_A 260 HCIQTDLLEIDLTHNTQLIY--FQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD-- 334 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCE--EECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--
T ss_pred eccCCCCCEEECCCCccCCc--ccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--
Confidence 0111 12345677888888776655555432 234566777777765 355564
Q ss_pred CCCCCCCCEEEEecCh
Q 047903 390 PWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 390 l~~l~~L~~L~l~~~~ 405 (430)
+.++++|+.|+++++.
T Consensus 335 l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCTTCSEEECCSSC
T ss_pred cccCCcCcEEECCCCC
Confidence 7788889999888776
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=3.3e-22 Score=204.38 Aligned_cols=268 Identities=19% Similarity=0.153 Sum_probs=183.1
Q ss_pred CeeEEEEeecCCCcccccc-c--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903 119 NVKRINVFEKQSDFAHLDD-Y--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD 195 (430)
Q Consensus 119 ~~r~L~l~~~~~~~~~~~~-~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~ 195 (430)
+++.+.+. ++....++.. + +++|+ +|++++|.++.+|..++.+++|++|++++|.++.+++..|+++++|++|+
T Consensus 255 ~L~~L~l~-~n~l~~~~~~~~~~l~~L~--~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQ-KHYFFNISSNTFHCFSGLQ--ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECT-TCCCSSCCTTTTTTCTTCS--EEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred ceeEEEee-cCccCccCHHHhccccCCC--EEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 57788887 6666555554 3 67777 88888888888888888888888888888888877443338888888888
Q ss_pred cCCCCcc-ccchh-hccCcccceeecCCcccCCCc--C---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903 196 MPFSYID-HTADE-FWKMNNLRHLNFGSITLPAHP--R---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 268 (430)
Q Consensus 196 L~~~~l~-~lp~~-i~~L~~L~~L~l~~~~~~~~l--p---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 268 (430)
+++|.+. .+|.. ++++++|++|++++|.+.... | +.+++|+.|.+.++......+.. ++.+++|++|+++++
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFT 410 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCC
Confidence 8888665 56554 778888888888888877622 3 45566666665554433334445 777888888888777
Q ss_pred ccccHHHHH-HHhcCCCCCCEEEEecCC---C-------CCCceEEEE--------------EcccccCCcceEEEEccc
Q 047903 269 LSYYQSLLS-QSLCTLTCLESLKLVSES---K-------MPTLSKIVL--------------VEYQFPPRLTHLSFSNTE 323 (430)
Q Consensus 269 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~---~-------~~~L~~L~l--------------~~~~lp~~L~~L~L~~~~ 323 (430)
. .....+ ..+..+++|+.|+++++. . +++|+.|++ ++..+ ++|+.|++++|.
T Consensus 411 ~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 411 R--LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVLSFCD 487 (606)
T ss_dssp C--EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-TTCCEEECTTSC
T ss_pred c--CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC-CCccEEECCCCc
Confidence 5 222222 236677788888877611 0 455666655 24456 778888888887
Q ss_pred cCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCce-EEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEe
Q 047903 324 LMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEW-TMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCW 402 (430)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 402 (430)
+...+ +.....+++|+.|+++++ .+... +.....+++| .|++++|......|..+..+++|+.++++
T Consensus 488 l~~~~----------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 488 LSSID----------QHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp CCEEC----------TTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred cCccC----------hhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 64321 112456889999999884 45443 3344567888 88999876444345557888999999998
Q ss_pred cCh
Q 047903 403 WPQ 405 (430)
Q Consensus 403 ~~~ 405 (430)
+||
T Consensus 556 ~N~ 558 (606)
T 3t6q_A 556 QNP 558 (606)
T ss_dssp TCC
T ss_pred CCC
Confidence 866
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=204.69 Aligned_cols=125 Identities=19% Similarity=0.274 Sum_probs=79.4
Q ss_pred CCCCeeEEEEeecCCCccc-cccc--cCcceEEEEEecCCc-cccc-ccccccccCCceeecCCCCCccc-ChHhhhcCC
Q 047903 116 SRKNVKRINVFEKQSDFAH-LDDY--DSHMHSLVLDLGSLV-LIHY-LSGIENLFLLRYLKLNIPSLKSL-PSPLLSNLL 189 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~-~~~~--~~~L~~L~L~l~~~~-l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~ 189 (430)
.+.++++|.+. .+.+..+ +..+ +++|+ +|++++|. ...+ |..|+++++|++|+|++|.++.+ |..+ ++++
T Consensus 22 lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~--~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLS-FNYIRTVTASSFPFLEQLQ--LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLF 97 (844)
T ss_dssp SCTTCCEEEEE-SCCCCEECSSSCSSCCSCS--EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCS
T ss_pred CCCCcCEEECC-CCcCCccChhHCcccccCe--EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCc
Confidence 45667777777 5555443 3344 66666 77777774 3345 45677777777777777777766 4444 7777
Q ss_pred CccEEecCCCCccc-cchh--hccCcccceeecCCcccCCCcC----ccCCCCcccceeecC
Q 047903 190 NLYTLDMPFSYIDH-TADE--FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISAL 244 (430)
Q Consensus 190 ~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~ 244 (430)
+|++|+|++|.+.. +|.. ++++++|++|++++|.+.+..| +.+++|+.|.+..+.
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 77777777776664 4443 6777777777777777766222 456666666655544
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=9.3e-23 Score=191.00 Aligned_cols=224 Identities=13% Similarity=0.074 Sum_probs=154.9
Q ss_pred CCCCeeEEEEee-cCCCccccccc--cCcceEEEEEecCCccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCCC
Q 047903 116 SRKNVKRINVFE-KQSDFAHLDDY--DSHMHSLVLDLGSLVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLN 190 (430)
Q Consensus 116 ~~~~~r~L~l~~-~~~~~~~~~~~--~~~L~~L~L~l~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~ 190 (430)
..+.+++|.+.. +.....++..+ +++|+ +|++++|.++ .+|..++++++|++|++++|.++ .+|..+ +++++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~ 150 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLH--YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPN 150 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCS--EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCC--EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCC
Confidence 567899999983 44444577777 89999 9999999998 88899999999999999999999 678888 99999
Q ss_pred ccEEecCCCCcc-ccchhhccCc-ccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEE
Q 047903 191 LYTLDMPFSYID-HTADEFWKMN-NLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRI 265 (430)
Q Consensus 191 L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l 265 (430)
|++|++++|.++ .+|..+++++ +|++|++++|.+.+.+| ..++ |+.|.+.++......+.. ++.+++|+.|++
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L 228 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL-FGSDKNTQKIHL 228 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG-CCTTSCCSEEEC
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH-HhcCCCCCEEEC
Confidence 999999999998 8899999998 99999999999986455 2222 333333333222223333 555555555555
Q ss_pred EccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCC
Q 047903 266 WGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGF 345 (430)
Q Consensus 266 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (430)
+++. ..... + .+..+ ++|++|++++|.+... ++.....+
T Consensus 229 ~~N~--l~~~~---------------------~-------~~~~l-~~L~~L~Ls~N~l~~~----------~p~~l~~l 267 (313)
T 1ogq_A 229 AKNS--LAFDL---------------------G-------KVGLS-KNLNGLDLRNNRIYGT----------LPQGLTQL 267 (313)
T ss_dssp CSSE--ECCBG---------------------G-------GCCCC-TTCCEEECCSSCCEEC----------CCGGGGGC
T ss_pred CCCc--eeeec---------------------C-------ccccc-CCCCEEECcCCcccCc----------CChHHhcC
Confidence 5553 11110 0 12234 6777777777765421 11123456
Q ss_pred CcccEEEEeeCCCCC-ceEEcCCccccccEeEEeecCCCCcCC
Q 047903 346 PNLKVLHLKSMLWLE-EWTMGIGAMPKLECLIINPCAYLKKMP 387 (430)
Q Consensus 346 ~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~lp 387 (430)
++|+.|++++ +.+. .+|. .+.+++|+.+++.+++.+...|
T Consensus 268 ~~L~~L~Ls~-N~l~~~ip~-~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 268 KFLHSLNVSF-NNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTCCEEECCS-SEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred cCCCEEECcC-CcccccCCC-CccccccChHHhcCCCCccCCC
Confidence 7777777776 3344 3333 3678888888888877665544
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=5.1e-21 Score=195.57 Aligned_cols=168 Identities=16% Similarity=0.185 Sum_probs=79.7
Q ss_pred CCCCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccC-hHhhhcCCC
Q 047903 116 SRKNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLP-SPLLSNLLN 190 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~~L~~ 190 (430)
...++++|.+. ++.+..++ ..+ +++|+ +|++++|.++.+ |..|+++++|++|++++|.++.+| ..+ +++++
T Consensus 54 ~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~--~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~ 129 (606)
T 3vq2_A 54 NFSELQWLDLS-RCEIETIEDKAWHGLHHLS--NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI-GQLIT 129 (606)
T ss_dssp TCTTCCEEECT-TCCCCEECTTTTTTCTTCC--EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC-TTCTT
T ss_pred CCccCcEEeCC-CCcccccCHHHhhchhhcC--EeECCCCcccccChhhcCCcccCCEEEccCCcccccccccc-CCCCC
Confidence 34445555554 33333332 222 44444 555555555543 344555555555555555555443 223 55555
Q ss_pred ccEEecCCCCcc--ccchhhccCcccceeecCCcccCCCcC-ccCCCCcc-------cceeecCCCCcchhhhcCCCCCC
Q 047903 191 LYTLDMPFSYID--HTADEFWKMNNLRHLNFGSITLPAHPR-KYCRSLEN-------LNFISALHPCCCTEDILGRLPNL 260 (430)
Q Consensus 191 L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~-------L~~~~~~~~~~~~~~~l~~l~~L 260 (430)
|++|++++|.+. .+|..++++++|++|++++|.+.+ ++ ..+..+.. |.+..+... ..+.. .....+|
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~-~~~~~~L 206 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQ-AFQGIKL 206 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCC-EECTT-TTTTCEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcc-eeCcc-cccCcee
Confidence 555555555444 245555555555555555555544 32 22222211 211111111 11222 2233378
Q ss_pred ceEEEEccccccHHHHHHHhcCCCCCCEEEE
Q 047903 261 RNLRIWGDLSYYQSLLSQSLCTLTCLESLKL 291 (430)
Q Consensus 261 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 291 (430)
+.|+++++. ......+..+..+++|+.+++
T Consensus 207 ~~L~L~~n~-~~~~~~~~~~~~l~~L~~l~l 236 (606)
T 3vq2_A 207 HELTLRGNF-NSSNIMKTCLQNLAGLHVHRL 236 (606)
T ss_dssp EEEEEESCC-SCHHHHHHHHHTTTTCEEEEE
T ss_pred eeeeccCCc-cchhHHHHHhccccccccccc
Confidence 888888875 122455666677777666655
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=9.3e-22 Score=206.11 Aligned_cols=265 Identities=14% Similarity=0.165 Sum_probs=200.5
Q ss_pred CCCCeeEEEEeecCC-Cc--cccccc--c-------CcceEEEEEecCCccccccc--ccccccCCceeecCCCCCcccC
Q 047903 116 SRKNVKRINVFEKQS-DF--AHLDDY--D-------SHMHSLVLDLGSLVLIHYLS--GIENLFLLRYLKLNIPSLKSLP 181 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~-~~--~~~~~~--~-------~~L~~L~L~l~~~~l~~lp~--~~~~l~~L~~L~L~~~~i~~lp 181 (430)
...+++.|.+. ++. .. .+|..+ + ++|+ .|++++|.++.+|. .++++++|++|++++|.++.+|
T Consensus 513 ~L~~L~~L~Ls-~N~~lsg~~iP~~i~~L~~~~~~l~~L~--~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 513 DLPELQSLNIA-CNRGISAAQLKADWTRLADDEDTGPKIQ--IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE 589 (876)
T ss_dssp GCSSCCEEECT-TCTTSCHHHHHHHHHHHHHCTTTTTTCC--EEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC
T ss_pred CCCCCCEEECc-CCCCcccccchHHHHhhhhcccccCCcc--EEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch
Confidence 56789999999 665 54 355544 3 4889 99999999999998 8999999999999999999999
Q ss_pred hHhhhcCCCccEEecCCCCccccchhhccCcc-cceeecCCcccCCCcCcc---C--CCCcccceeecCCCCcch---hh
Q 047903 182 SPLLSNLLNLYTLDMPFSYIDHTADEFWKMNN-LRHLNFGSITLPAHPRKY---C--RSLENLNFISALHPCCCT---ED 252 (430)
Q Consensus 182 ~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~-L~~L~l~~~~~~~~lp~~---l--~~L~~L~~~~~~~~~~~~---~~ 252 (430)
.+ +++++|+.|++++|.+..+|..+.++++ |++|++++|.+.. +|.. + ++|+.|.+.++......+ ..
T Consensus 590 -~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 67 9999999999999999999999999999 9999999999996 8822 2 236666666554322111 12
Q ss_pred hcC--CCCCCceEEEEccccccHHHHHH-HhcCCCCCCEEEEecCC--C-----C----------CCceEEEE-------
Q 047903 253 ILG--RLPNLRNLRIWGDLSYYQSLLSQ-SLCTLTCLESLKLVSES--K-----M----------PTLSKIVL------- 305 (430)
Q Consensus 253 ~l~--~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~--~-----~----------~~L~~L~l------- 305 (430)
++ .+++|+.|++++|. .. .++. .+..+++|+.|+++++. . + ++|+.|++
T Consensus 667 -l~~~~~~~L~~L~Ls~N~--L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 667 -MDDYKGINASTVTLSYNE--IQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp -TTTCCCCCEEEEECCSSC--CC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred -hccccCCCcCEEEccCCc--CC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 22 34588999999886 33 3443 34578899999998621 0 1 16777776
Q ss_pred ---Ecc--cccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCC-----C-CCceEEcCCccccccE
Q 047903 306 ---VEY--QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSML-----W-LEEWTMGIGAMPKLEC 374 (430)
Q Consensus 306 ---~~~--~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~-l~~~~~~~~~~~~L~~ 374 (430)
.+. .+ ++|+.|+|++|.+... +.....+++|+.|++++++ + ...++...+.+++|+.
T Consensus 743 lp~~l~~~~l-~~L~~L~Ls~N~L~~l-----------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 743 LSDDFRATTL-PYLSNMDVSYNCFSSF-----------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810 (876)
T ss_dssp CCGGGSTTTC-TTCCEEECCSSCCSSC-----------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred chHHhhhccC-CCcCEEEeCCCCCCcc-----------chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE
Confidence 233 66 7888888888877542 2334578999999997622 2 3345555677999999
Q ss_pred eEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 375 LIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 375 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
|++++|. ++.+|..+. ++|+.|++++|+
T Consensus 811 L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 811 LQIGSND-IRKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp EECCSSC-CCBCCSCCC--SSSCEEECCSCT
T ss_pred EECCCCC-CCccCHhhc--CCCCEEECCCCC
Confidence 9999986 599998765 699999999997
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=7.5e-21 Score=188.06 Aligned_cols=270 Identities=16% Similarity=0.177 Sum_probs=138.4
Q ss_pred CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~ 193 (430)
...++++|.+. ++....++. + +++|+ +|++++|.+..++. ++++++|++|++++|.++.+|. + +++++|++
T Consensus 66 ~l~~L~~L~Ls-~n~l~~~~~-~~~l~~L~--~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~ 138 (466)
T 1o6v_A 66 YLNNLTQINFS-NNQLTDITP-LKNLTKLV--DILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-L-KNLTNLNR 138 (466)
T ss_dssp GCTTCCEEECC-SSCCCCCGG-GTTCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCSE
T ss_pred hhcCCCEEECC-CCccCCchh-hhccccCC--EEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-H-cCCCCCCE
Confidence 45677888887 666655554 4 77777 77777777776665 7777778888887777777754 5 77777777
Q ss_pred EecCCCCccccch--------------------hhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchh
Q 047903 194 LDMPFSYIDHTAD--------------------EFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTE 251 (430)
Q Consensus 194 L~L~~~~l~~lp~--------------------~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~ 251 (430)
|++++|.+..+|. .++++++|++|++++|.+.. ++ ..+++|+.|.+.++... ...
T Consensus 139 L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~--~~~ 215 (466)
T 1o6v_A 139 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQIS--DIT 215 (466)
T ss_dssp EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCC--CCG
T ss_pred EECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-ChhhccCCCCCEEEecCCccc--ccc
Confidence 7777776665543 13344445555555555444 33 44444444444433321 111
Q ss_pred hhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC--------CCCCceEEEE---------EcccccCCc
Q 047903 252 DILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES--------KMPTLSKIVL---------VEYQFPPRL 314 (430)
Q Consensus 252 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l---------~~~~lp~~L 314 (430)
. ++.+++|++|+++++.- .. + ..+..+++|+.|+++++. .+++|+.|++ .+..+ ++|
T Consensus 216 ~-~~~l~~L~~L~l~~n~l--~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l-~~L 289 (466)
T 1o6v_A 216 P-LGILTNLDELSLNGNQL--KD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL-TAL 289 (466)
T ss_dssp G-GGGCTTCCEEECCSSCC--CC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTC-TTC
T ss_pred c-ccccCCCCEEECCCCCc--cc-c-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCC-Ccc
Confidence 2 33344444444444431 10 0 123444445555444310 0334444443 12233 445
Q ss_pred ceEEEEccccCCccccc-ccCCCeE---------EEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCC
Q 047903 315 THLSFSNTELMEDPKSR-ASSSRKL---------TCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLK 384 (430)
Q Consensus 315 ~~L~L~~~~l~~~~~~~-~~~~~~~---------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 384 (430)
+.|++++|.+...+... ......+ ......+++|+.|+++++ .+..++ ....+++|+.|++++|. +.
T Consensus 290 ~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~ 366 (466)
T 1o6v_A 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ-IS 366 (466)
T ss_dssp SEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CC
T ss_pred CeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc-cC
Confidence 55555555443322100 0000000 000234556666666653 344332 23456666666666654 33
Q ss_pred cCCCCCCCCCCCCEEEEecCh
Q 047903 385 KMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 385 ~lp~~l~~l~~L~~L~l~~~~ 405 (430)
.++. +..+++|++|++++|+
T Consensus 367 ~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 367 DLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp BCGG-GTTCTTCCEEECCCEE
T ss_pred ccch-hhcCCCCCEEeccCCc
Confidence 3333 5666777777776665
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=8.8e-22 Score=183.79 Aligned_cols=241 Identities=18% Similarity=0.137 Sum_probs=166.3
Q ss_pred EEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCccc---ChHhhhcCCCccEEecC
Q 047903 122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSL---PSPLLSNLLNLYTLDMP 197 (430)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~l---p~~i~~~L~~L~~L~L~ 197 (430)
.+... +.....+|..+.++++ +|++++|.++.+|. .|+++++|++|++++|.++.+ |..+ .++++|++|+++
T Consensus 11 ~l~c~-~~~l~~ip~~~~~~l~--~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCN-SKGLTSVPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLS 86 (306)
T ss_dssp EEECC-SSCCSSCCSCCCTTCC--EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECC
T ss_pred EEEcC-CCCcccCCCCCCCCCC--EEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECC
Confidence 44454 5556667777778888 89999999988885 478899999999999988755 5667 789999999999
Q ss_pred CCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH
Q 047903 198 FSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS 277 (430)
Q Consensus 198 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 277 (430)
+|.+..+|..+.++++|++|++++|.+.. +|. ... +..+++|+.|+++++. .....+
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~-~~~-------------------~~~-~~~l~~L~~L~l~~n~--l~~~~~ 143 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQ-MSE-------------------FSV-FLSLRNLIYLDISHTH--TRVAFN 143 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEES-STT-------------------TTT-TTTCTTCCEEECTTSC--CEECST
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccc-ccc-------------------chh-hhhccCCCEEECCCCc--CCccch
Confidence 99988888888899999999999998876 330 112 4455555555555554 222233
Q ss_pred HHhcCCCCCCEEEEecCCCCCCceE--EEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEee
Q 047903 278 QSLCTLTCLESLKLVSESKMPTLSK--IVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKS 355 (430)
Q Consensus 278 ~~l~~l~~L~~L~l~~~~~~~~L~~--L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 355 (430)
..+..+++|+.|++++ ..+.. +.-++..+ ++|++|++++|.+...+ +.....+++|+.|++++
T Consensus 144 ~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAG----NSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLS----------PTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp TTTTTCTTCCEEECTT----CEEGGGEECSCCTTC-TTCCEEECTTSCCCEEC----------TTTTTTCTTCCEEECTT
T ss_pred hhcccCcCCCEEECCC----CccccccchhHHhhC-cCCCEEECCCCCcCCcC----------HHHhcCCCCCCEEECCC
Confidence 3445555566665553 11221 11145566 78888888888764321 11234577888888887
Q ss_pred CCCCCceEE-cCCccccccEeEEeecCCCCcCCCCCCCCC-CCCEEEEecCh
Q 047903 356 MLWLEEWTM-GIGAMPKLECLIINPCAYLKKMPEQPWCIK-SLNKFNCWWPQ 405 (430)
Q Consensus 356 ~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~ 405 (430)
+.+..++. ....+++|+.|++++|......|..+..++ +|++|++++|+
T Consensus 209 -N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 209 -NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred -CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 44555433 335688999999999875555677788884 89999998865
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=9.2e-21 Score=190.10 Aligned_cols=138 Identities=16% Similarity=0.104 Sum_probs=112.0
Q ss_pred eEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCccc-ChHhhhcCCCccEEecCC
Q 047903 121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~ 198 (430)
+.+.+. ++....+|..+.++++ +|++++|.++.++ ..|+++++|++|++++|.++.+ |..+ +++++|++|++++
T Consensus 3 ~~l~ls-~n~l~~ip~~~~~~L~--~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRS-KNGLIHVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSH 78 (520)
T ss_dssp CEEECT-TSCCSSCCCSCCTTCS--EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCS
T ss_pred ceEecC-CCCccccccccccccc--EEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCC
Confidence 567777 7777778877788999 9999999999776 6899999999999999999988 4555 9999999999999
Q ss_pred CCccccchhhccCcccceeecCCcccCC-CcC---ccCCCCcccceeecCCCCcchhhhcCCCCCC--ceEEEEcc
Q 047903 199 SYIDHTADEFWKMNNLRHLNFGSITLPA-HPR---KYCRSLENLNFISALHPCCCTEDILGRLPNL--RNLRIWGD 268 (430)
Q Consensus 199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L--~~L~l~~~ 268 (430)
|.++.+|.. .+++|++|++++|.+.+ .+| +.+++|+.|.+.++.... .. ++.+++| +.|++.++
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLG 148 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEEC
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeecc
Confidence 999999986 89999999999999987 355 678888888777765422 22 4444555 66666654
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=2.6e-21 Score=182.60 Aligned_cols=261 Identities=17% Similarity=0.153 Sum_probs=197.9
Q ss_pred CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
.++.++.|.+. ++.+..++. .+ +++|+ +|++++|.++.+ |..|+++++|++|++++|.++.+|..+ . ++|
T Consensus 50 ~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~--~~L 123 (330)
T 1xku_A 50 LPPDTALLDLQ-NNKITEIKDGDFKNLKNLH--TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-P--KTL 123 (330)
T ss_dssp CCTTCCEEECC-SSCCCCBCTTTTTTCTTCC--EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-C--TTC
T ss_pred CCCCCeEEECC-CCcCCEeChhhhccCCCCC--EEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-c--ccc
Confidence 35679999999 777766665 34 88899 999999999976 788999999999999999999999877 3 899
Q ss_pred cEEecCCCCccccchh-hccCcccceeecCCcccCC--CcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEE
Q 047903 192 YTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPA--HPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRI 265 (430)
Q Consensus 192 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~--~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l 265 (430)
++|++++|.+..++.. +.++++|++|++++|.+.. ..| ..+++|+.|.+.++... ..+.. + .++|++|++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~-~--~~~L~~L~l 199 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG-L--PPSLTELHL 199 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS-C--CTTCSEEEC
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcc-c--cccCCEEEC
Confidence 9999999999988764 8999999999999999864 133 55666776666555432 12222 2 388999999
Q ss_pred EccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCC
Q 047903 266 WGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDG 344 (430)
Q Consensus 266 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~ 344 (430)
+++. .....+..+..+++|+.|++++ ..++.+.. ++..+ ++|++|++++|.+...| .....
T Consensus 200 ~~n~--l~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~lp-----------~~l~~ 261 (330)
T 1xku_A 200 DGNK--ITKVDAASLKGLNNLAKLGLSF----NSISAVDNGSLANT-PHLRELHLNNNKLVKVP-----------GGLAD 261 (330)
T ss_dssp TTSC--CCEECTGGGTTCTTCCEEECCS----SCCCEECTTTGGGS-TTCCEEECCSSCCSSCC-----------TTTTT
T ss_pred CCCc--CCccCHHHhcCCCCCCEEECCC----CcCceeChhhccCC-CCCCEEECCCCcCccCC-----------hhhcc
Confidence 9986 4444456788999999999985 44555533 46677 99999999999886543 22457
Q ss_pred CCcccEEEEeeCCCCCceEEcC-------CccccccEeEEeecCCCC--cCCCCCCCCCCCCEEEEecCh
Q 047903 345 FPNLKVLHLKSMLWLEEWTMGI-------GAMPKLECLIINPCAYLK--KMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 345 ~~~L~~L~l~~~~~l~~~~~~~-------~~~~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+++|++|++++ +.+..++... ...++|+.|++.+++... ..|..+..+++++.+++++|.
T Consensus 262 l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 89999999998 4566654322 125789999999987432 345678889999999998863
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.2e-21 Score=184.67 Aligned_cols=219 Identities=18% Similarity=0.214 Sum_probs=165.6
Q ss_pred CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L 194 (430)
..+++.|.+. ++....++..+ +++|+ +|++++|.++.+|..++++++|++|++++|.++.+|..+ +++++|++|
T Consensus 80 ~~~l~~L~L~-~n~l~~lp~~l~~l~~L~--~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELR-SVPLPQFPDQAFRLSHLQ--HMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLREL 155 (328)
T ss_dssp STTCCEEEEE-SSCCSSCCSCGGGGTTCS--EEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCCEE
T ss_pred ccceeEEEcc-CCCchhcChhhhhCCCCC--EEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCCEE
Confidence 4678999999 77777788877 88999 999999999999999999999999999999999999998 999999999
Q ss_pred ecCCC-Cccccchhhcc---------CcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEE
Q 047903 195 DMPFS-YIDHTADEFWK---------MNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLR 264 (430)
Q Consensus 195 ~L~~~-~l~~lp~~i~~---------L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~ 264 (430)
++++| .+..+|..++. +++|++|++++|.+.. +| .. ++.+++|++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp---------------------~~-l~~l~~L~~L~ 212 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LP---------------------AS-IANLQNLKSLK 212 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CC---------------------GG-GGGCTTCCEEE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-ch---------------------Hh-hcCCCCCCEEE
Confidence 99998 66688887654 9999999999998875 55 22 44555566666
Q ss_pred EEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCC
Q 047903 265 IWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDG 344 (430)
Q Consensus 265 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~ 344 (430)
+++|. . ..++..+..+++|+.|++++ +.....+.-++..+ ++|++|++++|.+... ++.....
T Consensus 213 L~~N~--l-~~l~~~l~~l~~L~~L~Ls~---n~~~~~~p~~~~~l-~~L~~L~L~~n~~~~~----------~p~~~~~ 275 (328)
T 4fcg_A 213 IRNSP--L-SALGPAIHHLPKLEELDLRG---CTALRNYPPIFGGR-APLKRLILKDCSNLLT----------LPLDIHR 275 (328)
T ss_dssp EESSC--C-CCCCGGGGGCTTCCEEECTT---CTTCCBCCCCTTCC-CCCCEEECTTCTTCCB----------CCTTGGG
T ss_pred ccCCC--C-CcCchhhccCCCCCEEECcC---CcchhhhHHHhcCC-CCCCEEECCCCCchhh----------cchhhhc
Confidence 66554 1 12333455566666666654 22222222245566 8888888888876432 1222456
Q ss_pred CCcccEEEEeeCCCCCceEEcCCccccccEeEEee
Q 047903 345 FPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINP 379 (430)
Q Consensus 345 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 379 (430)
+++|+.|++++++....+|...+.+++|+.+.+..
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 88899999998888888887778888888887765
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=6.9e-22 Score=186.71 Aligned_cols=232 Identities=16% Similarity=0.135 Sum_probs=117.1
Q ss_pred eeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903 120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~ 198 (430)
++.+.+. ++....+|..+.++++ +|++++|.++.++ ..|+++++|++|++++|.++.+++..|+++++|++|++++
T Consensus 35 l~~l~~~-~~~l~~ip~~~~~~l~--~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCS-DLGLKAVPKEISPDTT--LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECC-SSCCSSCCSCCCTTCC--EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECC-CCCccccCCCCCCCCe--EEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4555555 5555555555566666 6666666666554 4566666777777776666665332226667777777766
Q ss_pred CCccccchhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCC--CcchhhhcCCCCCCceEEEEcccccc
Q 047903 199 SYIDHTADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHP--CCCTEDILGRLPNLRNLRIWGDLSYY 272 (430)
Q Consensus 199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~ 272 (430)
|.++.+|..+. ++|++|++++|.+.. +| ..+++|+.|.+.++... ...+.. ++.+ +|+.|+++++.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~--- 183 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAK--- 183 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSB---
T ss_pred CcCCccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECcCCC---
Confidence 66666665544 566667666666665 54 33444444444433321 122233 4444 56666666553
Q ss_pred HHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEE
Q 047903 273 QSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVL 351 (430)
Q Consensus 273 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 351 (430)
...++..+ .++|+.|++++ ..++.+.. .+..+ ++|+.|++++|.+...+ ......+++|+.|
T Consensus 184 l~~l~~~~--~~~L~~L~l~~----n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L 246 (332)
T 2ft3_A 184 LTGIPKDL--PETLNELHLDH----NKIQAIELEDLLRY-SKLYRLGLGHNQIRMIE----------NGSLSFLPTLREL 246 (332)
T ss_dssp CSSCCSSS--CSSCSCCBCCS----SCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCC----------TTGGGGCTTCCEE
T ss_pred CCccCccc--cCCCCEEECCC----CcCCccCHHHhcCC-CCCCEEECCCCcCCcCC----------hhHhhCCCCCCEE
Confidence 11122111 14555555553 11221110 23344 55555555555443321 0011234455555
Q ss_pred EEeeCCCCCceEEcCCccccccEeEEeec
Q 047903 352 HLKSMLWLEEWTMGIGAMPKLECLIINPC 380 (430)
Q Consensus 352 ~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 380 (430)
++++ +.+..++...+.+++|+.|++++|
T Consensus 247 ~L~~-N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 247 HLDN-NKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp ECCS-SCCCBCCTTGGGCTTCCEEECCSS
T ss_pred ECCC-CcCeecChhhhcCccCCEEECCCC
Confidence 5554 234444433444555555555553
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=1.3e-20 Score=185.17 Aligned_cols=263 Identities=18% Similarity=0.123 Sum_probs=161.2
Q ss_pred CCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecC
Q 047903 118 KNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP 197 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~ 197 (430)
.+++.|.+. ++....++. ..++|+ +|++++|.++.+| .++++++|++|++++|+++.+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~-~n~l~~l~~-~~~~L~--~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~----~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVD-NNNLKALSD-LPPLLE--YLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECC-SSCCSCCCS-CCTTCC--EEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC----TTCCEEECC
T ss_pred CCCcEEECC-CCccCcccC-CCCCCC--EEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc----ccccEEECc
Confidence 456666665 444443322 135677 8888888888877 5888888888888888888887533 588888888
Q ss_pred CCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH
Q 047903 198 FSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS 277 (430)
Q Consensus 198 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 277 (430)
+|.++.+| +++++++|++|++++|.+.+ +|...++|+.|.+.++... .+.+ ++.+++|+.|+++++. .. .++
T Consensus 182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~--l~-~l~ 253 (454)
T 1jl5_A 182 NNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE--ELPE-LQNLPFLTTIYADNNL--LK-TLP 253 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS--SCCC-CTTCTTCCEEECCSSC--CS-SCC
T ss_pred CCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC--cccc-cCCCCCCCEEECCCCc--CC-ccc
Confidence 88888888 48888889999999888887 7755567777777766542 3346 7888888899888875 11 111
Q ss_pred HHhcCCCCCCEEEEecCC------CCCCceEEEE------EcccccCCcceEEEEccccCCcccccccCCCeEE------
Q 047903 278 QSLCTLTCLESLKLVSES------KMPTLSKIVL------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLT------ 339 (430)
Q Consensus 278 ~~l~~l~~L~~L~l~~~~------~~~~L~~L~l------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~------ 339 (430)
. .+++|+.|+++++. .+++|+.|++ .+..+|++|+.|++++|.+...+... .....+.
T Consensus 254 ~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~-~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 254 D---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP-PSLEELNVSNNKL 329 (454)
T ss_dssp S---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCC-TTCCEEECCSSCC
T ss_pred c---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCc-CcCCEEECCCCcc
Confidence 1 23577777776511 1345666655 12233355666666666544321000 0000000
Q ss_pred -EcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCC--cCCCCCCCC-------------CCCCEEEEec
Q 047903 340 -CGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLK--KMPEQPWCI-------------KSLNKFNCWW 403 (430)
Q Consensus 340 -~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~ 403 (430)
.-...+++|+.|++++ +.+..++. .+++|++|++++|.... .+|..+..+ ++|+.|++++
T Consensus 330 ~~lp~~~~~L~~L~L~~-N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 330 IELPALPPRLERLIASF-NHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp SCCCCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------
T ss_pred ccccccCCcCCEEECCC-Cccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC
Confidence 0012357888888887 45666554 47889999999876444 577777777 7899999988
Q ss_pred Ch
Q 047903 404 PQ 405 (430)
Q Consensus 404 ~~ 405 (430)
|+
T Consensus 406 N~ 407 (454)
T 1jl5_A 406 NP 407 (454)
T ss_dssp --
T ss_pred Cc
Confidence 77
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=4.9e-21 Score=198.38 Aligned_cols=273 Identities=16% Similarity=0.140 Sum_probs=172.5
Q ss_pred CCCCeeEEEEeecCCCcccccc-c--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 116 SRKNVKRINVFEKQSDFAHLDD-Y--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~-~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
.+.++++|.+. ++.+..++.. + +++|+ +|++++|.++.+ |..|+++++|++|++++|.++.+|...|+++++|
T Consensus 23 ~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 23 LPTNITVLNLT-HNQLRRLPAANFTRYSQLT--SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp SCTTCSEEECC-SSCCCCCCGGGGGGGTTCS--EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCCcEEECC-CCCCCCcCHHHHhCCCcCc--EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 34678999998 6666655543 4 78888 888998888855 4678888999999999998888887544889999
Q ss_pred cEEecCCCCccccc-hhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcC--CCCCCceEEE
Q 047903 192 YTLDMPFSYIDHTA-DEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILG--RLPNLRNLRI 265 (430)
Q Consensus 192 ~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~--~l~~L~~L~l 265 (430)
++|++++|.+..+| ..++++++|++|++++|.+.+..| +.+++|+.|.+..+......... ++ .+++|++|++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-LDIFANSSLKKLEL 178 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH-HGGGTTCEESEEEC
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH-hhccccccccEEEC
Confidence 99999998888776 458888999999999988887333 45666666665555433333333 32 4567778877
Q ss_pred EccccccHHHHHHHhcCC---------------------------CCCCEEEEecCCC----------C--CCceEEEE-
Q 047903 266 WGDLSYYQSLLSQSLCTL---------------------------TCLESLKLVSESK----------M--PTLSKIVL- 305 (430)
Q Consensus 266 ~~~~~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~~----------~--~~L~~L~l- 305 (430)
+++. .....+..+..+ ++|+.|+++++.- + ++|+.|++
T Consensus 179 ~~n~--l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 179 SSNQ--IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp TTCC--CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred CCCc--ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 7764 221222222222 4566666654110 1 23555555
Q ss_pred ----------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCC-----ceEE----cC
Q 047903 306 ----------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLE-----EWTM----GI 366 (430)
Q Consensus 306 ----------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~----~~ 366 (430)
++..+ ++|++|++++|.+...+ +.....+++|+.|++.++..-. .++. ..
T Consensus 257 ~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~----------~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLF----------SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp TSCCCEECTTTTTTC-TTCCEEECCSCCBSEEC----------TTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CCCcCccCcccccCc-ccccEeeCCCCccCccC----------hhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 23445 66666666666553321 1123456677777776421110 1211 23
Q ss_pred CccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 367 GAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 367 ~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+.+++|++|++++|......|..+.++++|++|++++|.
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 456778888888765333344557777888888877763
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=184.55 Aligned_cols=239 Identities=15% Similarity=0.148 Sum_probs=168.7
Q ss_pred CeeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecC
Q 047903 119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP 197 (430)
Q Consensus 119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~ 197 (430)
..+.+... +.....+|..+.++++ +|++++|.++.++ ..|+++++|++|++++|.++.++...|.++++|++|+|+
T Consensus 44 ~~~~v~c~-~~~l~~iP~~~~~~l~--~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICV-RKNLREVPDGISTNTR--LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECC-SCCCSSCCSCCCTTCS--EEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeC-CCCcCcCCCCCCCCCc--EEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34566666 6667778888888999 9999999999776 689999999999999999998876666999999999999
Q ss_pred CCCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcccccc
Q 047903 198 FSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY 272 (430)
Q Consensus 198 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 272 (430)
+|.++.+|.. +..+++|++|++++|.+.. +| ..+++|+.|.+..+.........++..+++|+.|++++|.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--- 196 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN--- 196 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC---
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc---
Confidence 9999999874 8999999999999999887 55 3334444444433222111222114455555555555543
Q ss_pred HHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEE
Q 047903 273 QSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLH 352 (430)
Q Consensus 273 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 352 (430)
++.++ .+..+ ++|+.|+|++|.+...+ +.....+++|+.|+
T Consensus 197 ---------------------------l~~~~-~~~~l-~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 197 ---------------------------LREIP-NLTPL-IKLDELDLSGNHLSAIR----------PGSFQGLMHLQKLW 237 (440)
T ss_dssp ---------------------------CSSCC-CCTTC-SSCCEEECTTSCCCEEC----------TTTTTTCTTCCEEE
T ss_pred ---------------------------Ccccc-ccCCC-cccCEEECCCCccCccC----------hhhhccCccCCEEE
Confidence 22221 23455 78888888888764321 11235678888888
Q ss_pred EeeCCCCCceEEc-CCccccccEeEEeecCCCCcCCC-CCCCCCCCCEEEEecCh
Q 047903 353 LKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMPE-QPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 353 l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 405 (430)
+++ +.+..+... ...+++|+.|++++| .++.+|. .+..+++|+.|++++||
T Consensus 238 L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 238 MIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 887 455555332 356789999999986 4666664 46788999999998865
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.1e-21 Score=182.27 Aligned_cols=240 Identities=17% Similarity=0.141 Sum_probs=189.6
Q ss_pred CcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCcccc-chhhccCcccceee
Q 047903 140 SHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNNLRHLN 218 (430)
Q Consensus 140 ~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~ 218 (430)
.+++ +++++++.++.+|..+. ++|++|++++|.++.+++..|+++++|++|++++|.++.+ |..++++++|++|+
T Consensus 33 c~l~--~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLR--VVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETT--EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCC--EEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 3677 99999999999998764 6899999999999988654449999999999999999987 66799999999999
Q ss_pred cCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCC
Q 047903 219 FGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKM 297 (430)
Q Consensus 219 l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 297 (430)
+++|.+.. +| ...++|+.|.+.++......... ++.+++|+.|++.++........+..+..+ +|+.|++++
T Consensus 109 L~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~---- 181 (332)
T 2ft3_A 109 ISKNHLVE-IPPNLPSSLVELRIHDNRIRKVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE---- 181 (332)
T ss_dssp CCSSCCCS-CCSSCCTTCCEEECCSSCCCCCCSGG-GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS----
T ss_pred CCCCcCCc-cCccccccCCEEECCCCccCccCHhH-hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC----
Confidence 99999997 88 55588888888777654444455 899999999999998622223445566666 899999885
Q ss_pred CCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEE-cCCccccccEeE
Q 047903 298 PTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTM-GIGAMPKLECLI 376 (430)
Q Consensus 298 ~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~ 376 (430)
..++.++ ..++++|++|++++|.+...+ ......+++|+.|++++ +.+..++. ..+.+++|+.|+
T Consensus 182 n~l~~l~---~~~~~~L~~L~l~~n~i~~~~----------~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 182 AKLTGIP---KDLPETLNELHLDHNKIQAIE----------LEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp SBCSSCC---SSSCSSCSCCBCCSSCCCCCC----------TTSSTTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEE
T ss_pred CCCCccC---ccccCCCCEEECCCCcCCccC----------HHHhcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEE
Confidence 3344332 122278999999999876532 11245688999999998 45666543 345789999999
Q ss_pred EeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 377 INPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 377 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+++| .+..+|..+..+++|++|++++|+
T Consensus 248 L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 248 LDNN-KLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred CCCC-cCeecChhhhcCccCCEEECCCCC
Confidence 9997 588999999999999999999987
No 41
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=4.3e-20 Score=187.39 Aligned_cols=235 Identities=16% Similarity=0.051 Sum_probs=153.0
Q ss_pred CCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecC
Q 047903 118 KNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP 197 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~ 197 (430)
.+++.|.+. ++.+..++. .+++|+ +|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 61 ~~L~~L~L~-~N~l~~lp~-~l~~L~--~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIP-DNNLTSLPA-LPPELR--TLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEEC-SCCCSCCCC-CCTTCC--EEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECC
T ss_pred CCCcEEEec-CCCCCCCCC-cCCCCC--EEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECC
Confidence 456666666 555554444 456666 66666666666665 45666666666666666653 35666666666
Q ss_pred CCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH
Q 047903 198 FSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS 277 (430)
Q Consensus 198 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 277 (430)
+|+++.+|.. +++|++|++++|.+.+ +|..+++|+.|.+.++.... +. ..+++|+.|++++|. .. .++
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~--l~-~l~ 197 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQ--LA-SLP 197 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC--CS-CCC
T ss_pred CCCCCcCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCC--CC-CCC
Confidence 6666666653 3666667777666665 66545555555554443211 11 234666777776664 11 111
Q ss_pred HHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCC
Q 047903 278 QSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSML 357 (430)
Q Consensus 278 ~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 357 (430)
..+++|+.|++++ ..++.+ ...+++|+.|++++|.+...| ..+++|+.|++++ +
T Consensus 198 ---~~~~~L~~L~L~~----N~l~~l----~~~~~~L~~L~Ls~N~L~~lp--------------~~l~~L~~L~Ls~-N 251 (622)
T 3g06_A 198 ---TLPSELYKLWAYN----NRLTSL----PALPSGLKELIVSGNRLTSLP--------------VLPSELKELMVSG-N 251 (622)
T ss_dssp ---CCCTTCCEEECCS----SCCSSC----CCCCTTCCEEECCSSCCSCCC--------------CCCTTCCEEECCS-S
T ss_pred ---CccchhhEEECcC----Cccccc----CCCCCCCCEEEccCCccCcCC--------------CCCCcCcEEECCC-C
Confidence 1235666666653 223322 122288999999999875432 4678999999998 5
Q ss_pred CCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 358 WLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 358 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
.+..++. .+++|+.|++++| .++.+|..+.++++|+.|++++|+
T Consensus 252 ~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 252 RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 6777665 6899999999997 578999999999999999999998
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=2e-20 Score=184.30 Aligned_cols=238 Identities=16% Similarity=0.115 Sum_probs=166.4
Q ss_pred eeEEEEeecCCCccccccccCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903 120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~ 198 (430)
.+.+... +.....+|..+.++++ +|++++|.++.+ |..|+++++|++|++++|.++.++...|.++++|++|+|++
T Consensus 56 ~~~v~c~-~~~l~~iP~~~~~~l~--~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCT-RRGLSEVPQGIPSNTR--YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECC-SSCCSSCCSCCCTTCS--EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEEC-CCCcCccCCCCCCCcc--EEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4556666 6666678877788999 999999999866 47899999999999999999988755559999999999999
Q ss_pred CCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903 199 SYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ 273 (430)
Q Consensus 199 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 273 (430)
|.++.+|.. +.++++|++|++++|.+.. +| ..+++|+.|.+..+..........+..+++|+.|++++|.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~---- 207 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN---- 207 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC----
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc----
Confidence 999988876 8889999999999999887 55 3334444444433322111111114455555555555443
Q ss_pred HHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEE
Q 047903 274 SLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353 (430)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 353 (430)
++.+. .+..+ ++|+.|++++|.+...+ +.....+++|+.|++
T Consensus 208 --------------------------l~~~~-~~~~l-~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 208 --------------------------IKDMP-NLTPL-VGLEELEMSGNHFPEIR----------PGSFHGLSSLKKLWV 249 (452)
T ss_dssp --------------------------CSSCC-CCTTC-TTCCEEECTTSCCSEEC----------GGGGTTCTTCCEEEC
T ss_pred --------------------------ccccc-ccccc-ccccEEECcCCcCcccC----------cccccCccCCCEEEe
Confidence 22111 23455 78888888888764421 112356788888888
Q ss_pred eeCCCCCceEE-cCCccccccEeEEeecCCCCcCCC-CCCCCCCCCEEEEecCh
Q 047903 354 KSMLWLEEWTM-GIGAMPKLECLIINPCAYLKKMPE-QPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 354 ~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 405 (430)
++ +.+..+.. ....+++|+.|++++| .++.+|. .+..+++|++|++++||
T Consensus 250 ~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 250 MN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 87 44555432 2356889999999987 4667664 46788999999998865
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=8.7e-21 Score=192.34 Aligned_cols=124 Identities=18% Similarity=0.141 Sum_probs=72.9
Q ss_pred CCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903 117 RKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY 192 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~ 192 (430)
+..+++|++. ++.+..+.. .+ +++|+ +|++++|.++.++ ..|+++++|++|++++|.++.+|+..|+++++|+
T Consensus 27 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~--~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 27 PFSTKNLDLS-FNPLRHLGSYSFFSFPELQ--VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp CSSCCEEECC-SCCCCEECTTTTTTCSSCC--EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cccccEEEcc-CCccCccChhHhhCCCCce--EEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 4456667666 555443332 33 66666 6666666666554 4566666666666666666666543336666666
Q ss_pred EEecCCCCccccch-hhccCcccceeecCCcccCC-CcC---ccCCCCcccceeec
Q 047903 193 TLDMPFSYIDHTAD-EFWKMNNLRHLNFGSITLPA-HPR---KYCRSLENLNFISA 243 (430)
Q Consensus 193 ~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~lp---~~l~~L~~L~~~~~ 243 (430)
+|++++|.++.+|. .++++++|++|++++|.+.. .+| +.+++|+.|.+.++
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 66666666666654 36666666666666666654 234 34455555544433
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=1.7e-20 Score=191.71 Aligned_cols=263 Identities=14% Similarity=0.092 Sum_probs=149.0
Q ss_pred CCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCccc-ChHhhhcCCCc
Q 047903 117 RKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNL 191 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L 191 (430)
+.++++|.+. ++.+..++. .+ +++|+ +|++++|.++.+ |..|+++++|++|++++|.++.+ |..+ +++++|
T Consensus 31 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L 106 (606)
T 3vq2_A 31 PSSTKNIDLS-FNPLKILKSYSFSNFSELQ--WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSL 106 (606)
T ss_dssp CTTCCEEECT-TSCCCEECTTTTTTCTTCC--EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS-TTCTTC
T ss_pred CCCcCEEECC-CCCcCEeChhhccCCccCc--EEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc-CCcccC
Confidence 3556666666 554444433 33 55666 666666666654 34566666666666666666665 3444 666666
Q ss_pred cEEecCCCCccccc-hhhccCcccceeecCCcccCC-CcC---ccCCCCcccceeecCCCCcchhhhcCCCCC----Cce
Q 047903 192 YTLDMPFSYIDHTA-DEFWKMNNLRHLNFGSITLPA-HPR---KYCRSLENLNFISALHPCCCTEDILGRLPN----LRN 262 (430)
Q Consensus 192 ~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~-~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~----L~~ 262 (430)
++|++++|.+..+| ..++++++|++|++++|.+.. .+| +.+++|+.|.+.++......+.. ++.+++ +..
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-THHHHHCTTCCCE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hhhhhccccccce
Confidence 66666666666555 346666666666666666654 245 44555555554444332222222 333332 235
Q ss_pred EEEEccccccHHHHHHHhcCCCCCCEEEEecCCC-----------CCCceEEEEE-------------------------
Q 047903 263 LRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK-----------MPTLSKIVLV------------------------- 306 (430)
Q Consensus 263 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-----------~~~L~~L~l~------------------------- 306 (430)
|+++++. .. .++.......+|+.|+++++.- +++++.+.++
T Consensus 186 L~l~~n~--l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 186 LDMSLNP--ID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp EECTTCC--CC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred eeccCCC--cc-eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 6666554 11 1122222223677777765210 2333333321
Q ss_pred ------------------cccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCc
Q 047903 307 ------------------EYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGA 368 (430)
Q Consensus 307 ------------------~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 368 (430)
+..+ ++|+.|++++|.+...+ ....+++|+.|+++++. +..++ .. .
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~l~------------~l~~~~~L~~L~l~~n~-l~~lp-~~-~ 326 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCL-ANVSAMSLAGVSIKYLE------------DVPKHFKWQSLSIIRCQ-LKQFP-TL-D 326 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGG-TTCSEEEEESCCCCCCC------------CCCTTCCCSEEEEESCC-CSSCC-CC-C
T ss_pred HhheeccccccccccccccccC-CCCCEEEecCccchhhh------------hccccccCCEEEccccc-Ccccc-cC-C
Confidence 2234 56677777776653321 34567788888888754 46666 33 7
Q ss_pred cccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 369 MPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 369 ~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+++|++|++.+|..+..+ .+..+++|++|++++|.
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA 361 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred CCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence 888888888888666555 35678888888888775
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=7.7e-21 Score=192.73 Aligned_cols=114 Identities=21% Similarity=0.203 Sum_probs=88.6
Q ss_pred CCCCCCCCCCeeEEEEeecCCCcccccc-c--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhh
Q 047903 110 GDPKGKSRKNVKRINVFEKQSDFAHLDD-Y--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLL 185 (430)
Q Consensus 110 ~~~~~~~~~~~r~L~l~~~~~~~~~~~~-~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~ 185 (430)
....+...+++++|.+. ++.+..++.. + +++|+ +|++++|.++.++ ..|+++++|++|++++|.++.+|...|
T Consensus 44 ~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 120 (570)
T 2z63_A 44 GSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLS--TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120 (570)
T ss_dssp CTTTTTTCSSCCEEECT-TCCCCEECTTTTTTCTTCC--EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSC
T ss_pred ChhHhhCCCCceEEECC-CCcCCccCcccccCchhCC--EEeCcCCcCCccCHhhhcCccccccccccccccccCCCccc
Confidence 33344567788899988 6666655443 4 77888 8888988888665 678888889999998888888865323
Q ss_pred hcCCCccEEecCCCCccc--cchhhccCcccceeecCCcccCC
Q 047903 186 SNLLNLYTLDMPFSYIDH--TADEFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 186 ~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~ 226 (430)
+++++|++|++++|.+.. +|..++++++|++|++++|.+..
T Consensus 121 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 888889999998887775 67888888888888888888776
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=2.3e-20 Score=191.40 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=88.4
Q ss_pred CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
.+..+++|.+. .+.+..+++ .+ +++|+ +|+|++|.++.+| .+|+++++|++|+|++|+++.+|+..|+++++|
T Consensus 50 lp~~~~~LdLs-~N~i~~l~~~~f~~l~~L~--~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 50 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQ--VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCC--EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCcCCCEEEee-CCCCCCCCHHHHhCCCCCC--EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 35578888888 666666654 34 77777 8888888888776 467788888888888888888877666888888
Q ss_pred cEEecCCCCccccchh-hccCcccceeecCCcccCCC-cC---ccCCCCccccee
Q 047903 192 YTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAH-PR---KYCRSLENLNFI 241 (430)
Q Consensus 192 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~-lp---~~l~~L~~L~~~ 241 (430)
++|++++|+++.+|.. ++++++|++|++++|.+... +| +.+++|+.|.+.
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 8888888887777654 77788888888888777651 33 445555555443
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=192.06 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=118.4
Q ss_pred cCCCCCCCCCCeeEEEEeecC-CCccc-cccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcc-cCh
Q 047903 109 FGDPKGKSRKNVKRINVFEKQ-SDFAH-LDDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKS-LPS 182 (430)
Q Consensus 109 ~~~~~~~~~~~~r~L~l~~~~-~~~~~-~~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~-lp~ 182 (430)
+....+....+++.|.+. ++ ....+ ++.+ +++|+ +|++++|.+..+ |..|+++++|++|++++|.++. +|.
T Consensus 39 i~~~~~~~l~~L~~LdLs-~n~~~~~i~~~~f~~L~~L~--~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 39 VTASSFPFLEQLQLLELG-SQYTPLTIDKEAFRNLPNLR--ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp ECSSSCSSCCSCSEEEEC-TTCCCCEECTTTTSSCTTCC--EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred cChhHCcccccCeEEeCC-CCCCccccCHHHhcCCCCCC--EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc
Confidence 444455678889999999 55 44445 4555 88899 999999999865 7899999999999999999985 455
Q ss_pred H-hhhcCCCccEEecCCCCccccc--hhhccCcccceeecCCcccCCCcC---ccC--CCCcccceeecCCCCcchhhhc
Q 047903 183 P-LLSNLLNLYTLDMPFSYIDHTA--DEFWKMNNLRHLNFGSITLPAHPR---KYC--RSLENLNFISALHPCCCTEDIL 254 (430)
Q Consensus 183 ~-i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp---~~l--~~L~~L~~~~~~~~~~~~~~~l 254 (430)
. .|+++++|++|++++|.+..++ ..++++++|++|++++|.+.+..| ..+ ++|+.|.+..+......+.. +
T Consensus 116 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~ 194 (844)
T 3j0a_A 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-W 194 (844)
T ss_dssp TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-C
T ss_pred CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-h
Confidence 4 2399999999999999888663 569999999999999999987444 233 67777777665543333333 4
Q ss_pred CCCCC------CceEEEEccc
Q 047903 255 GRLPN------LRNLRIWGDL 269 (430)
Q Consensus 255 ~~l~~------L~~L~l~~~~ 269 (430)
+.+++ |+.|+++++.
T Consensus 195 ~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CSSSCTTTTCCBSEEBCSSCC
T ss_pred hhcCCccccCceeEEecCCCc
Confidence 44443 8888888774
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=3.2e-20 Score=187.36 Aligned_cols=192 Identities=17% Similarity=0.135 Sum_probs=151.9
Q ss_pred cCCCccccccccCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch
Q 047903 128 KQSDFAHLDDYDSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD 206 (430)
Q Consensus 128 ~~~~~~~~~~~~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~ 206 (430)
++....+|..+.++++ +|++++|.++.+ |..|+++++|++|++++|.++.+++..|+++++|++|++++|.+..+|.
T Consensus 14 ~~~l~~ip~~~~~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 14 SRSFTSIPSGLTAAMK--SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp TSCCSSCCSCCCTTCC--EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCccccccccCCCCcc--EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 4556667777788999 999999999966 4789999999999999999998875544999999999999999998877
Q ss_pred h-hccCcccceeecCCcccCC-CcC---ccCCCCcccceeecCCCCcch-hhhcCCCCCCceEEEEccccccHHHHHHHh
Q 047903 207 E-FWKMNNLRHLNFGSITLPA-HPR---KYCRSLENLNFISALHPCCCT-EDILGRLPNLRNLRIWGDLSYYQSLLSQSL 280 (430)
Q Consensus 207 ~-i~~L~~L~~L~l~~~~~~~-~lp---~~l~~L~~L~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 280 (430)
. ++++++|++|++++|.+.. .+| +.+++|+.|.+.++......+ .. ++.+++|++|++.++. .....+..+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n~--l~~~~~~~l 168 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKALS--LRNYQSQSL 168 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT--CCEECTTTT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCCc--ccccChhhh
Confidence 6 9999999999999999986 144 678888888888776323333 45 8999999999999987 555566778
Q ss_pred cCCCCCCEEEEecCC----------CCCCceEEEE---Ecc-----------cccCCcceEEEEccccC
Q 047903 281 CTLTCLESLKLVSES----------KMPTLSKIVL---VEY-----------QFPPRLTHLSFSNTELM 325 (430)
Q Consensus 281 ~~l~~L~~L~l~~~~----------~~~~L~~L~l---~~~-----------~lp~~L~~L~L~~~~l~ 325 (430)
..+++|+.|+++.+. .+++|+.|++ .+. .+ ++|+.|++++|.+.
T Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS-SPMKKLAFRGSVLT 236 (549)
T ss_dssp TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCC-CCCCEEEEESCEEE
T ss_pred hccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhh-hcccceeccccccc
Confidence 889999999998621 1567777776 111 23 56777777766543
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=6.8e-20 Score=180.28 Aligned_cols=231 Identities=18% Similarity=0.108 Sum_probs=166.3
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
+++|+ +|++++|.++.+| .++.+++|++|++++|.++.+| + +++++|++|++++|.++.+| ++++++|++|+
T Consensus 41 l~~L~--~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~-~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLT--SLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--L-SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCC--EEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--C-TTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cCCCC--EEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--c-ccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 78888 9999999999887 6899999999999999999987 6 99999999999999999886 88999999999
Q ss_pred cCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC--
Q 047903 219 FGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES-- 295 (430)
Q Consensus 219 l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-- 295 (430)
+++|.+.+ +| +.+++|+.|.+.++.... + . ++.+++|+.|+++++. ....+ .+..+++|+.|+++++.
T Consensus 113 L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~--l-~-l~~l~~L~~L~l~~n~--~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLTK-LDVSQNPLLTYLNCARNTLTE--I-D-VSHNTQLTELDCHLNK--KITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCSC-CCCTTCTTCCEEECTTSCCSC--C-C-CTTCTTCCEEECTTCS--CCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCe-ecCCCCCcCCEEECCCCccce--e-c-cccCCcCCEEECCCCC--ccccc--ccccCCcCCEEECCCCccc
Confidence 99999998 88 888888888777665433 2 5 7889999999999985 22222 36788999999998621
Q ss_pred -----CCCCceEEEE--------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCce
Q 047903 296 -----KMPTLSKIVL--------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEW 362 (430)
Q Consensus 296 -----~~~~L~~L~l--------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 362 (430)
.+++|+.|++ .+..+ ++|+.|++++|.+...| ...+++|+.|++++ +.+..+
T Consensus 184 ~l~l~~l~~L~~L~l~~N~l~~~~l~~l-~~L~~L~Ls~N~l~~ip-------------~~~l~~L~~L~l~~-N~l~~~ 248 (457)
T 3bz5_A 184 ELDVSQNKLLNRLNCDTNNITKLDLNQN-IQLTFLDCSSNKLTEID-------------VTPLTQLTYFDCSV-NPLTEL 248 (457)
T ss_dssp CCCCTTCTTCCEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSCCC-------------CTTCTTCSEEECCS-SCCSCC
T ss_pred eeccccCCCCCEEECcCCcCCeeccccC-CCCCEEECcCCcccccC-------------ccccCCCCEEEeeC-CcCCCc
Confidence 0344555544 23344 55555555555543211 34566777777766 344444
Q ss_pred EEcCCcccccc----------EeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 363 TMGIGAMPKLE----------CLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 363 ~~~~~~~~~L~----------~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+ .+.+++|+ .|++++|..+..+| ...+++|+.|++++|+
T Consensus 249 ~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 249 D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred C--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence 3 23344443 33444444344444 3456777777777776
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=6e-21 Score=176.24 Aligned_cols=213 Identities=17% Similarity=0.136 Sum_probs=145.1
Q ss_pred eEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCccc-ChHhhhcCCCccEEecCC
Q 047903 121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~ 198 (430)
+.+... +.....+|..+.++++ .|++++|.++.++ ..|+.+++|++|++++|.++.+ |..+ +++++|++|++++
T Consensus 14 ~~~~c~-~~~l~~ip~~~~~~l~--~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCP-QQGLQAVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSD 89 (285)
T ss_dssp CEEECC-SSCCSSCCTTCCTTCS--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCS
T ss_pred eEEEcC-cCCcccCCcCCCCCce--EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc-CCccCCCEEeCCC
Confidence 455555 5556667776678888 8899999988776 5688899999999999998887 4445 9999999999999
Q ss_pred CC-cccc-chhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903 199 SY-IDHT-ADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ 273 (430)
Q Consensus 199 ~~-l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 273 (430)
|. +..+ |..+.++++|++|++++|.+....| ..+++|+.|.+.++......... ++.+++|++|+++++. ..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--l~ 166 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNR--IS 166 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC--CC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH-hccCCCccEEECCCCc--cc
Confidence 95 8877 5568889999999999998887223 44555555555554433333344 6777888888888775 22
Q ss_pred HHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEE
Q 047903 274 SLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLH 352 (430)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 352 (430)
...+..+..+++|+.|++++ ..+..+.. ++..+ ++|+.|++++|.+...+ ......+++|+.|+
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~----------~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQ----NRVAHVHPHAFRDL-GRLMTLYLFANNLSALP----------TEALAPLRALQYLR 231 (285)
T ss_dssp EECTTTTTTCTTCCEEECCS----SCCCEECTTTTTTC-TTCCEEECCSSCCSCCC----------HHHHTTCTTCCEEE
T ss_pred ccCHHHhcCccccCEEECCC----CcccccCHhHccCc-ccccEeeCCCCcCCcCC----------HHHcccCcccCEEe
Confidence 22223466677777777764 33443321 34556 77777777777665432 01124567777777
Q ss_pred Eee
Q 047903 353 LKS 355 (430)
Q Consensus 353 l~~ 355 (430)
+++
T Consensus 232 l~~ 234 (285)
T 1ozn_A 232 LND 234 (285)
T ss_dssp CCS
T ss_pred ccC
Confidence 776
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=5.9e-20 Score=190.27 Aligned_cols=266 Identities=18% Similarity=0.154 Sum_probs=180.6
Q ss_pred EEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC
Q 047903 122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY 200 (430)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~ 200 (430)
.+... +.....+|..+.++++ +|++++|.++.+|. .|+++++|++|++++|.++.+++..|+++++|++|++++|.
T Consensus 8 ~~~cs-~~~L~~ip~~~~~~l~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCS-HLKLTQVPDDLPTNIT--VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECC-SSCCSSCCSCSCTTCS--EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECC-CCCccccccccCCCCc--EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 34455 5556667777778999 99999999998874 69999999999999999998855555999999999999999
Q ss_pred ccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHH
Q 047903 201 IDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSL 275 (430)
Q Consensus 201 l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 275 (430)
++.+|.. ++++++|++|++++|.+.+ +| +.+++|+.|.+..+......+.. ++.+++|++|++.++. ....
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~--l~~~ 160 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNK--IQAL 160 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSC--CCCB
T ss_pred cCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCc--cccc
Confidence 9999974 9999999999999999988 66 45667777766666544455566 8899999999999986 3333
Q ss_pred HHHHh--cCCCCCCEEEEecCC---C-------CCCceEE---------------------------EE-----------
Q 047903 276 LSQSL--CTLTCLESLKLVSES---K-------MPTLSKI---------------------------VL----------- 305 (430)
Q Consensus 276 ~~~~l--~~l~~L~~L~l~~~~---~-------~~~L~~L---------------------------~l----------- 305 (430)
.+..+ ..+++|+.|+++++. . +++|+.+ ++
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 33333 356899999998621 0 2233333 32
Q ss_pred Eccccc-CCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE-EcCCccccccEeEEeecCCC
Q 047903 306 VEYQFP-PRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCAYL 383 (430)
Q Consensus 306 ~~~~lp-~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l 383 (430)
++..++ ++|+.|++++|.+...+ +.....+++|++|+++++ .+..+. ...+.+++|+.|++.+|..-
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVG----------NDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEEC----------TTTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred HhhccCcCCCCEEECCCCCcCccC----------cccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhh
Confidence 111220 12555555555432211 011345677777777763 344332 23355777777777654311
Q ss_pred C-----cCCC----CCCCCCCCCEEEEecCh
Q 047903 384 K-----KMPE----QPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 384 ~-----~lp~----~l~~l~~L~~L~l~~~~ 405 (430)
. .+|. .+..+++|++|++++|.
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred cccccccccccChhhcccCCCCCEEECCCCc
Confidence 1 2332 56677888888888775
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=1.8e-20 Score=175.81 Aligned_cols=212 Identities=16% Similarity=0.125 Sum_probs=113.6
Q ss_pred cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCccccee
Q 047903 139 DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHL 217 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 217 (430)
+++|+ .|++++|.++.++ ..++.+++|++|++++|.++.+++ + +.+++|++|++++|.++.+|. .++|++|
T Consensus 33 ~~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 33 AWNVK--ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (317)
T ss_dssp GGGCS--EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred CCCCC--EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCccccccC----CCCcCEE
Confidence 34555 6666666655443 455566666666666666554443 3 666666666666665555442 2556666
Q ss_pred ecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC
Q 047903 218 NFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK 296 (430)
Q Consensus 218 ~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 296 (430)
++++|.+.. ++ ..+++| ++|+++++. .....+..+..+++|+.|++++
T Consensus 105 ~l~~n~l~~-~~~~~~~~L-------------------------~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~--- 153 (317)
T 3o53_A 105 HAANNNISR-VSCSRGQGK-------------------------KNIYLANNK--ITMLRDLDEGCRSRVQYLDLKL--- 153 (317)
T ss_dssp ECCSSCCSE-EEECCCSSC-------------------------EEEECCSSC--CCSGGGBCTGGGSSEEEEECTT---
T ss_pred ECCCCccCC-cCccccCCC-------------------------CEEECCCCC--CCCccchhhhccCCCCEEECCC---
Confidence 666665555 33 344444 444444443 2222222333444455555442
Q ss_pred CCCceEEEE-E-cccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccE
Q 047903 297 MPTLSKIVL-V-EYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLEC 374 (430)
Q Consensus 297 ~~~L~~L~l-~-~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 374 (430)
..+..+.. . ...+ ++|++|++++|.+...+ ....+++|++|++++ +.+..++.....+++|+.
T Consensus 154 -N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~------------~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 154 -NEIDTVNFAELAASS-DTLEHLNLQYNFIYDVK------------GQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTW 218 (317)
T ss_dssp -SCCCEEEGGGGGGGT-TTCCEEECTTSCCCEEE------------CCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSE
T ss_pred -CCCCcccHHHHhhcc-CcCCEEECCCCcCcccc------------cccccccCCEEECCC-CcCCcchhhhcccCcccE
Confidence 23333321 1 1244 66666666666553221 122366677777666 445555544555667777
Q ss_pred eEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 375 LIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 375 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
|++++| .++.+|..+..+++|+.|++++|+
T Consensus 219 L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 219 ISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred EECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 777765 456666666667777777777665
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=177.13 Aligned_cols=247 Identities=16% Similarity=0.139 Sum_probs=187.7
Q ss_pred CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
..+++++|.+. ++.+..++. .+ +++|+ +|++++|.++.++ ..|+++++|++|++++|.++.+|...|+++++|
T Consensus 50 ~~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 50 LTEAVKSLDLS-NNRITYISNSDLQRCVNLQ--ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp CCTTCCEEECT-TSCCCEECTTTTTTCTTCC--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred ccccCcEEECC-CCcCcccCHHHhccCCCCC--EEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 34589999999 777776665 44 88999 9999999999775 679999999999999999999998855999999
Q ss_pred cEEecCCCCccccch--hhccCcccceeecCCcc-cCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEE
Q 047903 192 YTLDMPFSYIDHTAD--EFWKMNNLRHLNFGSIT-LPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLR 264 (430)
Q Consensus 192 ~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~-~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~ 264 (430)
++|++++|.++.+|. .+.++++|++|++++|. +.. ++ +.+++|+.|.+.++......+.. ++.+++|++|+
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~ 204 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNVSHLI 204 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHHH-HhccccCCeec
Confidence 999999999999987 58999999999999995 555 64 56677777777776655555667 99999999999
Q ss_pred EEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE----EcccccCCcceEEEEccccCCcccccccCCCeEEE
Q 047903 265 IWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL----VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTC 340 (430)
Q Consensus 265 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l----~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 340 (430)
++++. ........+..+++|+.|+++++ .++.+.. ..... +.++.++++++.+....+. .++.
T Consensus 205 l~~n~--l~~~~~~~~~~~~~L~~L~L~~n----~l~~~~~~~l~~~~~~-~~l~~l~L~~~~l~~~~l~------~l~~ 271 (353)
T 2z80_A 205 LHMKQ--HILLLEIFVDVTSSVECLELRDT----DLDTFHFSELSTGETN-SLIKKFTFRNVKITDESLF------QVMK 271 (353)
T ss_dssp EECSC--STTHHHHHHHHTTTEEEEEEESC----BCTTCCCC------CC-CCCCEEEEESCBCCHHHHH------HHHH
T ss_pred CCCCc--cccchhhhhhhcccccEEECCCC----cccccccccccccccc-chhhccccccccccCcchh------hhHH
Confidence 99996 33333344556899999999962 1221110 11233 6788888888876442110 0111
Q ss_pred cCCCCCcccEEEEeeCCCCCceEEcC-CccccccEeEEeecC
Q 047903 341 GSDGFPNLKVLHLKSMLWLEEWTMGI-GAMPKLECLIINPCA 381 (430)
Q Consensus 341 ~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~ 381 (430)
....+++|+.|++++ +.+..++... +.+++|++|++++|+
T Consensus 272 ~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 272 LLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 235688999999998 5677777664 678999999999986
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=9.6e-22 Score=184.49 Aligned_cols=234 Identities=17% Similarity=0.116 Sum_probs=144.5
Q ss_pred CCCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903 117 RKNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~ 193 (430)
.+++++|.+. ++.+..++ +.+ +++|+ +|++++|.++..++ ++.+++|++|++++|.++.+| ..++|++
T Consensus 33 ~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~ 103 (317)
T 3o53_A 33 AWNVKELDLS-GNPLSQISAADLAPFTKLE--LLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (317)
T ss_dssp GGGCSEEECT-TSCCCCCCHHHHTTCTTCC--EEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred CCCCCEEECc-CCccCcCCHHHhhCCCcCC--EEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence 4579999999 77766555 344 88999 99999999987665 899999999999999998875 4589999
Q ss_pred EecCCCCccccchhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhc-CCCCCCceEEEEcc
Q 047903 194 LDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDIL-GRLPNLRNLRIWGD 268 (430)
Q Consensus 194 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~ 268 (430)
|++++|.+..++.. .+++|++|++++|.+.. ++ +.+++|+.|.+.++......+.. + ..+++|++|++++|
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQYN 179 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEECTTS
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHH-HhhccCcCCEEECCCC
Confidence 99999999988753 47899999999999988 54 33455555555444433333333 3 35666777777666
Q ss_pred ccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcc
Q 047903 269 LSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNL 348 (430)
Q Consensus 269 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 348 (430)
. .... .....+++|+.|++++ ..++.+.-.+..+ ++|+.|++++|.+...| .....+++|
T Consensus 180 ~--l~~~--~~~~~l~~L~~L~Ls~----N~l~~l~~~~~~l-~~L~~L~L~~N~l~~l~-----------~~~~~l~~L 239 (317)
T 3o53_A 180 F--IYDV--KGQVVFAKLKTLDLSS----NKLAFMGPEFQSA-AGVTWISLRNNKLVLIE-----------KALRFSQNL 239 (317)
T ss_dssp C--CCEE--ECCCCCTTCCEEECCS----SCCCEECGGGGGG-TTCSEEECTTSCCCEEC-----------TTCCCCTTC
T ss_pred c--Cccc--ccccccccCCEEECCC----CcCCcchhhhccc-CcccEEECcCCcccchh-----------hHhhcCCCC
Confidence 4 1111 1122345555555552 3333332233444 55555555555543211 112344555
Q ss_pred cEEEEeeCCCCC--ceEEcCCccccccEeEEeecCCCC
Q 047903 349 KVLHLKSMLWLE--EWTMGIGAMPKLECLIINPCAYLK 384 (430)
Q Consensus 349 ~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~c~~l~ 384 (430)
+.|++++. .+. .++...+.+++|+.|++.+|+.++
T Consensus 240 ~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 240 EHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CEEEccCC-CccCcCHHHHHhccccceEEECCCchhcc
Confidence 55555542 222 122222345555555555444443
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.3e-19 Score=185.71 Aligned_cols=138 Identities=20% Similarity=0.149 Sum_probs=115.5
Q ss_pred cCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch
Q 047903 128 KQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD 206 (430)
Q Consensus 128 ~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~ 206 (430)
+.....+|..+.+.++ +|||++|.++.+| .+|+++++|++|+|++|+|+.+|+..|++|++|++|+|++|+++.+|.
T Consensus 40 ~~~l~~vP~~lp~~~~--~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 40 ELNFYKIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TSCCSSCCSSSCTTCC--EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCcCccCCCCCcCCC--EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 3445668888778899 9999999999887 589999999999999999999988766999999999999999999986
Q ss_pred h-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCC-cchhhhcCCCCCCceEEEEccc
Q 047903 207 E-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPC-CCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 207 ~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
+ |.++++|++|++++|.+.. +| +.+++|+.|.+.++.... ..+.. ++.+++|++|+++++.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK 184 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred HHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcc
Confidence 5 8999999999999999998 77 556666666666555332 33455 7888999999988765
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=6.4e-20 Score=169.33 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=143.4
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCcccc-chhhccCcccceeecCCcc-
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSIT- 223 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~- 223 (430)
+++.+++.++.+|..+ .++|++|++++|.++.+|...|+++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 7888999999998765 46899999999999999866559999999999999999987 6679999999999999997
Q ss_pred cCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCC
Q 047903 224 LPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPT 299 (430)
Q Consensus 224 ~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 299 (430)
+.. ++ ..+++|+.|.+.++......+.. +..+++|++|+++++.
T Consensus 93 l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~------------------------------ 140 (285)
T 1ozn_A 93 LRS-VDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNA------------------------------ 140 (285)
T ss_dssp CCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSC------------------------------
T ss_pred ccc-cCHHHhcCCcCCCEEECCCCcCCEECHhH-hhCCcCCCEEECCCCc------------------------------
Confidence 665 43 33344444443333322222333 4555555555555543
Q ss_pred ceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCce-EEcCCccccccEeEE
Q 047903 300 LSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEW-TMGIGAMPKLECLII 377 (430)
Q Consensus 300 L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l 377 (430)
++.+.. .+..+ ++|++|++++|.+...+ ......+++|+.|++++ +.+..+ +...+.+++|+.|++
T Consensus 141 l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~----------~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 141 LQALPDDTFRDL-GNLTHLFLHGNRISSVP----------ERAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp CCCCCTTTTTTC-TTCCEEECCSSCCCEEC----------TTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccCHhHhccC-CCccEEECCCCcccccC----------HHHhcCccccCEEECCC-CcccccCHhHccCcccccEeeC
Confidence 111110 23445 67777777777654321 00134567777888776 334444 333456788888888
Q ss_pred eecCCCCcCCC-CCCCCCCCCEEEEecCh
Q 047903 378 NPCAYLKKMPE-QPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 378 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 405 (430)
++|. +..+|. .+..+++|++|++++|+
T Consensus 209 ~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 209 FANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 8864 666653 47788899999998765
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=9e-21 Score=188.16 Aligned_cols=142 Identities=18% Similarity=0.143 Sum_probs=104.0
Q ss_pred cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCccccee
Q 047903 139 DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHL 217 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 217 (430)
+++|+ .|++++|.++.++ ..|+.+++|++|++++|.++..++ + +.+++|++|++++|.++.+|. .++|++|
T Consensus 33 ~~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 33 AWNVK--ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp GGGCC--EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred CCCcc--EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 44788 9999999988665 688999999999999999987655 5 999999999999998888774 3889999
Q ss_pred ecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhc-CCCCCCEEEEe
Q 047903 218 NFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLC-TLTCLESLKLV 292 (430)
Q Consensus 218 ~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~ 292 (430)
++++|.+.+ +| ..+++|+.|.+.++......+.. ++.+++|+.|++++|. .....+..+. .+++|+.|+++
T Consensus 105 ~L~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 105 HAANNNISR-VSCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp ECCSSCCCC-EEECCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECT
T ss_pred ECcCCcCCC-CCccccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCC--CCCcChHHHhhhCCcccEEecC
Confidence 999999988 66 66777777777666554444445 6667777777777765 2222233332 34555555554
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=8e-19 Score=177.65 Aligned_cols=143 Identities=17% Similarity=0.082 Sum_probs=115.8
Q ss_pred eeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903 120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~ 198 (430)
.+.+.+. ++....+|..+.++++ +|++++|.++.++ ..|+++++|++|++++|.++.+++..|+++++|++|++++
T Consensus 33 ~~~l~ls-~~~L~~ip~~~~~~L~--~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYS-NRNLTHVPKDLPPRTK--ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECT-TSCCCSCCTTSCTTCC--EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcC-CCCCccCCCCCCCCcC--EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3788888 7777778887789999 9999999999877 6899999999999999999988555449999999999999
Q ss_pred CCccccchhhccCcccceeecCCcccCC-CcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 199 SYIDHTADEFWKMNNLRHLNFGSITLPA-HPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
|.++.+|.. .+++|++|++++|.+.. .+| +.+++|+.|.+.++......... +..+ +|+.|++.++.
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~L-~L~~L~L~~n~ 180 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP-VAHL-HLSCILLDLVS 180 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGG-GTTS-CEEEEEEEESS
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhh-hhhc-eeeEEEeeccc
Confidence 999999986 89999999999999987 234 66777777777765543333333 3333 34888888764
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=1.3e-20 Score=176.25 Aligned_cols=235 Identities=17% Similarity=0.145 Sum_probs=148.5
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCc--ccChHhhh-------cCCCccEEecCCCCcc-ccchhh--ccCcc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLK--SLPSPLLS-------NLLNLYTLDMPFSYID-HTADEF--WKMNN 213 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~--~lp~~i~~-------~L~~L~~L~L~~~~l~-~lp~~i--~~L~~ 213 (430)
.+++++|.+ .+|..+... |++|++++|.++ .+|..+ . ++++|++|++++|.++ .+|..+ +.+++
T Consensus 47 ~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 122 (312)
T 1wwl_A 47 YLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRI-LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122 (312)
T ss_dssp THHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHH-HHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred eEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHH-HHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence 555566666 555544433 666666666654 345444 3 5666666666666665 455544 56666
Q ss_pred cceeecCCcccCCCcC---ccC-----CCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHh--cCC
Q 047903 214 LRHLNFGSITLPAHPR---KYC-----RSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSL--CTL 283 (430)
Q Consensus 214 L~~L~l~~~~~~~~lp---~~l-----~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l--~~l 283 (430)
|++|++++|.+.+ +| +.+ ++|+.|.+.++......+.. ++.+++|++|++++|........+..+ ..+
T Consensus 123 L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 123 LNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred ccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-hccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 6666666666666 34 222 56666666555543344455 778888888888887511112234444 777
Q ss_pred CCCCEEEEecCCCCCCceEEEE----EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCC
Q 047903 284 TCLESLKLVSESKMPTLSKIVL----VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWL 359 (430)
Q Consensus 284 ~~L~~L~l~~~~~~~~L~~L~l----~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 359 (430)
++|+.|++++ ..++.+.- .+..+ ++|++|++++|.+...+. ......+++|+.|++++ +.+
T Consensus 201 ~~L~~L~L~~----N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~---------~~~~~~l~~L~~L~Ls~-N~l 265 (312)
T 1wwl_A 201 PTLQVLALRN----AGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAG---------APSCDWPSQLNSLNLSF-TGL 265 (312)
T ss_dssp TTCCEEECTT----SCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCC---------CSCCCCCTTCCEEECTT-SCC
T ss_pred CCCCEEECCC----CcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccc---------hhhhhhcCCCCEEECCC-Ccc
Confidence 8888888875 23332110 23456 788999999988755320 01123468999999988 456
Q ss_pred CceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 360 EEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 360 ~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+.++.... ++|++|++++| .++.+|. +..+++|++|++++++
T Consensus 266 ~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 266 KQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred Chhhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 66655443 89999999986 5787877 8899999999999987
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=5.7e-19 Score=173.27 Aligned_cols=217 Identities=18% Similarity=0.121 Sum_probs=163.9
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccc-hhhccCcccceeecCCccc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNNLRHLNFGSITL 224 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~ 224 (430)
.++.++..++.+|..+. +++++|++++|+++.++...|.++++|++|+|++|.+..++ ..+.++++|++|++++|.+
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 78888888999998775 68999999999999887555599999999999999999886 4589999999999999998
Q ss_pred CCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEE
Q 047903 225 PAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIV 304 (430)
Q Consensus 225 ~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~ 304 (430)
.. +| ... +..+++|++|++++|. .....+..+..+++|+.|+++. ...+..+.
T Consensus 125 ~~-~~--------------------~~~-~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~---~~~l~~i~ 177 (440)
T 3zyj_A 125 TT-IP--------------------NGA-FVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGE---LKRLSYIS 177 (440)
T ss_dssp SS-CC--------------------TTT-SCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCC---CTTCCEEC
T ss_pred Ce-eC--------------------HhH-hhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCC---CCCcceeC
Confidence 87 44 112 4555556666666554 2222223455666666766665 44455443
Q ss_pred E-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE-EcCCccccccEeEEeecCC
Q 047903 305 L-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCAY 382 (430)
Q Consensus 305 l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~ 382 (430)
- .+..+ ++|+.|++++|.+...| ....+++|+.|++++ +.+..+. .....+++|+.|++.+|..
T Consensus 178 ~~~~~~l-~~L~~L~L~~n~l~~~~------------~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 178 EGAFEGL-SNLRYLNLAMCNLREIP------------NLTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp TTTTTTC-SSCCEEECTTSCCSSCC------------CCTTCSSCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cchhhcc-cccCeecCCCCcCcccc------------ccCCCcccCEEECCC-CccCccChhhhccCccCCEEECCCCce
Confidence 2 45677 99999999999886543 246789999999998 4566653 3346789999999999764
Q ss_pred CCcCCCCCCCCCCCCEEEEecCh
Q 047903 383 LKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 383 l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
-...|..+.++++|++|++++|.
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSC
T ss_pred eEEChhhhcCCCCCCEEECCCCC
Confidence 34346678899999999999986
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=4e-19 Score=174.94 Aligned_cols=217 Identities=17% Similarity=0.119 Sum_probs=165.1
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccc-hhhccCcccceeecCCccc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNNLRHLNFGSITL 224 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~ 224 (430)
.++.++..++.+|..+. ++|++|++++|.++.+++..|+++++|++|+|++|.+..++ ..+.++++|++|++++|.+
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 78888888999998765 68999999999999885554599999999999999999886 5589999999999999998
Q ss_pred CCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEE
Q 047903 225 PAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIV 304 (430)
Q Consensus 225 ~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~ 304 (430)
.. +| ... ++.+++|++|++++|. .....+..+..+++|+.|+++. +..++.+.
T Consensus 136 ~~-~~--------------------~~~-~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~---~~~l~~i~ 188 (452)
T 3zyi_A 136 TV-IP--------------------SGA-FEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGE---LKKLEYIS 188 (452)
T ss_dssp SB-CC--------------------TTT-SSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECCC---CTTCCEEC
T ss_pred Cc-cC--------------------hhh-hcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeCCC---CCCccccC
Confidence 87 44 112 4555666666666654 2222223456666777777765 45555554
Q ss_pred E-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE-EcCCccccccEeEEeecCC
Q 047903 305 L-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCAY 382 (430)
Q Consensus 305 l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~ 382 (430)
. .+..+ ++|+.|++++|.+...| ....+++|+.|++++ +.+..+. .....+++|+.|++++|..
T Consensus 189 ~~~~~~l-~~L~~L~L~~n~l~~~~------------~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 189 EGAFEGL-FNLKYLNLGMCNIKDMP------------NLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp TTTTTTC-TTCCEEECTTSCCSSCC------------CCTTCTTCCEEECTT-SCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred hhhccCC-CCCCEEECCCCcccccc------------cccccccccEEECcC-CcCcccCcccccCccCCCEEEeCCCcC
Confidence 3 35677 99999999999886543 246789999999998 5566653 3456789999999999864
Q ss_pred CCcCCCCCCCCCCCCEEEEecCh
Q 047903 383 LKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 383 l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
....|..+..+++|++|++++|.
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC
T ss_pred ceECHHHhcCCCCCCEEECCCCc
Confidence 44456778999999999999986
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.3e-19 Score=169.04 Aligned_cols=222 Identities=18% Similarity=0.187 Sum_probs=143.7
Q ss_pred CCCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCccccc---ccccccccCCceeecCCCCCcccChHhhhcCC
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHY---LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLL 189 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~l---p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~ 189 (430)
.+.++++|.+. ++.+..++... +++|+ +|++++|.++.+ |..+..+++|++|++++|.++.+|..+ .+++
T Consensus 26 ~~~~l~~L~L~-~n~l~~i~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~-~~l~ 101 (306)
T 2z66_A 26 IPSSATRLELE-SNKLQSLPHGVFDKLTQLT--KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLE 101 (306)
T ss_dssp CCTTCCEEECC-SSCCCCCCTTTTTTCTTCS--EEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE-ETCT
T ss_pred CCCCCCEEECC-CCccCccCHhHhhccccCC--EEECCCCccCcccCcccccccccccCEEECCCCccccChhhc-CCCC
Confidence 35689999999 77777777654 78888 999999998754 567778999999999999999999888 9999
Q ss_pred CccEEecCCCCccccch--hhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEc
Q 047903 190 NLYTLDMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWG 267 (430)
Q Consensus 190 ~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 267 (430)
+|++|++++|.++.++. .+.++++|++|++++|.+....|.. ++.+++|++|++++
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------------------~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI----------------------FNGLSSLEVLKMAG 159 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT----------------------TTTCTTCCEEECTT
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh----------------------cccCcCCCEEECCC
Confidence 99999999999998875 6899999999999999887622222 33344444444444
Q ss_pred cccccHH-HHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCC
Q 047903 268 DLSYYQS-LLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGF 345 (430)
Q Consensus 268 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (430)
+. ... ..+..+..+++|+.|++++ ..++.+.. ++..+ ++|++|++++|.+...+ ......+
T Consensus 160 n~--l~~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~----------~~~~~~l 222 (306)
T 2z66_A 160 NS--FQENFLPDIFTELRNLTFLDLSQ----CQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLD----------TFPYKCL 222 (306)
T ss_dssp CE--EGGGEECSCCTTCTTCCEEECTT----SCCCEECTTTTTTC-TTCCEEECTTSCCSBCC----------SGGGTTC
T ss_pred Cc--cccccchhHHhhCcCCCEEECCC----CCcCCcCHHHhcCC-CCCCEEECCCCccCccC----------hhhccCc
Confidence 42 111 1233344444444444442 22232211 33444 56666666666554321 0012345
Q ss_pred CcccEEEEeeCCCCCce-EEcCCccc-cccEeEEeecC
Q 047903 346 PNLKVLHLKSMLWLEEW-TMGIGAMP-KLECLIINPCA 381 (430)
Q Consensus 346 ~~L~~L~l~~~~~l~~~-~~~~~~~~-~L~~L~l~~c~ 381 (430)
++|+.|+++++ .+... +.....++ +|++|++++|+
T Consensus 223 ~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 223 NSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 66666666653 33332 22233443 66677666654
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.4e-19 Score=179.58 Aligned_cols=215 Identities=15% Similarity=0.111 Sum_probs=172.9
Q ss_pred cccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceee
Q 047903 163 NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFIS 242 (430)
Q Consensus 163 ~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~ 242 (430)
.+++|++|++++|.++.+|+..|+++++|++|+|++|.+..++. ++.+++|++|++++|.+.+ +|. .++|+.|.+.+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~-~~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLV-GPSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EEE-CTTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CCC-CCCcCEEECcC
Confidence 34489999999999998865444999999999999999987765 9999999999999999987 762 27788887776
Q ss_pred cCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-Ecc-cccCCcceEEEE
Q 047903 243 ALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEY-QFPPRLTHLSFS 320 (430)
Q Consensus 243 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~-~lp~~L~~L~L~ 320 (430)
+...... ...+++|+.|++++|. .....+..+..+++|+.|++++ ..+..... .+. .+ ++|+.|+|+
T Consensus 109 N~l~~~~----~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~l~~~l-~~L~~L~Ls 177 (487)
T 3oja_A 109 NNISRVS----CSRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKL----NEIDTVNFAELAASS-DTLEHLNLQ 177 (487)
T ss_dssp SCCCCEE----ECCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTT----SCCCEEEGGGGGGGT-TTCCEEECT
T ss_pred CcCCCCC----ccccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCC----CCCCCcChHHHhhhC-CcccEEecC
Confidence 6543222 3456889999999997 5555556778899999999984 45665533 333 67 999999999
Q ss_pred ccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEE
Q 047903 321 NTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFN 400 (430)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 400 (430)
+|.+... .....+++|+.|++++ +.+..++...+.+++|+.|++++| .+..+|..+..+++|+.|+
T Consensus 178 ~N~l~~~------------~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 178 YNFIYDV------------KGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp TSCCCEE------------ECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEE
T ss_pred CCccccc------------cccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEE
Confidence 9987543 2234589999999998 567887777778999999999996 4778999999999999999
Q ss_pred EecCh
Q 047903 401 CWWPQ 405 (430)
Q Consensus 401 l~~~~ 405 (430)
+++|+
T Consensus 244 l~~N~ 248 (487)
T 3oja_A 244 LRGNG 248 (487)
T ss_dssp CTTCC
T ss_pred cCCCC
Confidence 99987
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=3.5e-18 Score=167.94 Aligned_cols=259 Identities=18% Similarity=0.138 Sum_probs=185.8
Q ss_pred CCCCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD 195 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~ 195 (430)
.+++++.|.+. ++....+++ ..++|+ +|++++|.++.+|... ++|++|++++|.++.+| ++ +++++|++|+
T Consensus 89 ~~~~L~~L~l~-~n~l~~lp~-~~~~L~--~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp-~~-~~l~~L~~L~ 159 (454)
T 1jl5_A 89 LPPHLESLVAS-CNSLTELPE-LPQSLK--SLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP-EL-QNSSFLKIID 159 (454)
T ss_dssp CCTTCSEEECC-SSCCSSCCC-CCTTCC--EEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC-CC-TTCTTCCEEE
T ss_pred CcCCCCEEEcc-CCcCCcccc-ccCCCc--EEECCCCccCcccCCC---CCCCEEECcCCCCCCCc-cc-CCCCCCCEEE
Confidence 35689999998 766665554 368888 9999999988776432 68999999999999998 56 9999999999
Q ss_pred cCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903 196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ 273 (430)
Q Consensus 196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 273 (430)
+++|+++.+|.. ..+|++|++++|.+.+ +| +.+++|+.|.+.++... .+.. ..++|++|+++++. ..
T Consensus 160 l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~--~l~~---~~~~L~~L~l~~n~--l~ 228 (454)
T 1jl5_A 160 VDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLK--KLPD---LPLSLESIVAGNNI--LE 228 (454)
T ss_dssp CCSSCCSCCCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS--SCCC---CCTTCCEEECCSSC--CS
T ss_pred CCCCcCcccCCC---cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCC--cCCC---CcCcccEEECcCCc--CC
Confidence 999999988864 3589999999999998 88 66777777766555432 1222 23589999999986 22
Q ss_pred HHHHHHhcCCCCCCEEEEecCC------CCCCceEEEE---Ecc---cccCCcceEEEEccccCCcccccccCCCeEEEc
Q 047903 274 SLLSQSLCTLTCLESLKLVSES------KMPTLSKIVL---VEY---QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCG 341 (430)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l---~~~---~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~ 341 (430)
.++ .+..+++|+.|+++++. .+++|+.|++ .+. ..+++|+.|++++|.+...+... .....+...
T Consensus 229 -~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~-~~L~~L~l~ 305 (454)
T 1jl5_A 229 -ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP-PNLYYLNAS 305 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC-TTCCEEECC
T ss_pred -ccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcC-CcCCEEECc
Confidence 444 37889999999998721 1567888877 222 22378899999998876532100 001111100
Q ss_pred ------CCCC-CcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 342 ------SDGF-PNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 342 ------~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
...+ ++|+.|++++ +.+..++. .+++|+.|++++| .++.+|. .+++|++|++++|+
T Consensus 306 ~N~l~~i~~~~~~L~~L~Ls~-N~l~~lp~---~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 306 SNEIRSLCDLPPSLEELNVSN-NKLIELPA---LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp SSCCSEECCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CCcCCcccCCcCcCCEEECCC-Cccccccc---cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCC
Confidence 1123 4788888887 45655443 3689999999987 5778887 47899999999877
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=9e-19 Score=160.32 Aligned_cols=149 Identities=22% Similarity=0.203 Sum_probs=108.0
Q ss_pred CCCCeeEEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L 194 (430)
.....+.+.+. ++....+|..+.++++ .|++++|.++.++. .|+++++|++|++++|.++.+|..+|.++++|++|
T Consensus 14 c~~~~~~l~~~-~~~l~~ip~~~~~~l~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 14 CNNNKNSVDCS-SKKLTAIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp EETTTTEEECT-TSCCSSCCSCCCTTCS--EEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred eCCCCCEEEcc-CCCCCccCCCCCCCCC--EEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 33456677777 6667777777777888 89999999887774 78899999999999999999988777889999999
Q ss_pred ecCCCCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 195 DMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 195 ~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
++++|.+..+|.. +.++++|++|++++|.+.. +| +.+++|+.|.+.++......... ++.+++|++|+++++.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGV-FDKLTSLKELRLYNNQ 168 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhH-ccCCcccceeEecCCc
Confidence 9999998888765 6889999999999998887 54 23444444444333322222222 4555555555555553
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=6.9e-19 Score=161.60 Aligned_cols=209 Identities=21% Similarity=0.157 Sum_probs=129.2
Q ss_pred CCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccc-h
Q 047903 129 QSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTA-D 206 (430)
Q Consensus 129 ~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~ 206 (430)
.....+|..+.++++ +|++++|.++.++. .++++++|++|++++|.++.++...|+++++|++|++++|.++.++ .
T Consensus 17 ~~l~~ip~~l~~~l~--~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 17 LNFYKIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp SCCSSCCSSSCTTCC--EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccccCCCCCCCcc--EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 334446666666778 88888888876664 7778888888888888888776644488888888888888877765 4
Q ss_pred hhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHH-HHHHHhcCCCC
Q 047903 207 EFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQS-LLSQSLCTLTC 285 (430)
Q Consensus 207 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~ 285 (430)
.+.++++|++|++++|.+.. + .... ++.+++|++|+++++. ... .++..+..+
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~-~--------------------~~~~-~~~l~~L~~L~l~~n~--l~~~~l~~~~~~l-- 148 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLAS-L--------------------ENFP-IGHLKTLKELNVAHNL--IQSFKLPEYFSNL-- 148 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCC-S--------------------TTCC-CTTCTTCCEEECCSSC--CCCCCCCGGGGGC--
T ss_pred hhcCCccccEEECCCCCccc-c--------------------Cchh-cccCCCCCEEECcCCc--cceecCchhhccC--
Confidence 47788888888888877765 2 1223 6778888899888875 211 123334444
Q ss_pred CCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCccc----EEEEeeCCCCCc
Q 047903 286 LESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLK----VLHLKSMLWLEE 361 (430)
Q Consensus 286 L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~ 361 (430)
++|++|++++|.+...+. .....+++|+ .|++++ +.+..
T Consensus 149 --------------------------~~L~~L~Ls~N~l~~~~~----------~~~~~l~~L~~l~l~L~ls~-n~l~~ 191 (276)
T 2z62_A 149 --------------------------TNLEHLDLSSNKIQSIYC----------TDLRVLHQMPLLNLSLDLSL-NPMNF 191 (276)
T ss_dssp --------------------------TTCCEEECCSSCCCEECG----------GGGHHHHTCTTCCEEEECCS-SCCCE
T ss_pred --------------------------CCCCEEECCCCCCCcCCH----------HHhhhhhhccccceeeecCC-Ccccc
Confidence 444555555554432110 0011122222 455554 33444
Q ss_pred eEEcCCccccccEeEEeecCCCCcCCCC-CCCCCCCCEEEEec
Q 047903 362 WTMGIGAMPKLECLIINPCAYLKKMPEQ-PWCIKSLNKFNCWW 403 (430)
Q Consensus 362 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 403 (430)
++.......+|+.|++++|. ++.+|.. +..+++|++|++++
T Consensus 192 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 192 IQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp ECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCS
T ss_pred cCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccC
Confidence 44333334467777777754 6666543 46677777777774
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=1.1e-17 Score=169.75 Aligned_cols=232 Identities=18% Similarity=0.087 Sum_probs=185.7
Q ss_pred CeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903 119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~ 198 (430)
+++.|.+. ++....++..+.++|+ .|++++|.++.+|. .+++|++|++++|+++.+|. .+++|++|++++
T Consensus 41 ~l~~L~ls-~n~L~~lp~~l~~~L~--~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVG-ESGLTTLPDCLPAHIT--TLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECC-SSCCSCCCSCCCTTCS--EEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECS
T ss_pred CCcEEEec-CCCcCccChhhCCCCc--EEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcC
Confidence 47888998 7777778887788999 99999999998887 57899999999999999985 679999999999
Q ss_pred CCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHH
Q 047903 199 SYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQ 278 (430)
Q Consensus 199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 278 (430)
|.++.+|. .+++|++|++++|.+.. +|..+++|+.|.+.++.... +. ..+++|+.|++.+|. ...++
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~--l~---~~~~~L~~L~L~~N~---l~~l~- 177 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQLTS-LPVLPPGLQELSVSDNQLAS--LP---ALPSELCKLWAYNNQ---LTSLP- 177 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC---CSCCC-
T ss_pred CcCCCCCC---CCCCcCEEECCCCCCCc-CCCCCCCCCEEECcCCcCCC--cC---CccCCCCEEECCCCC---CCCCc-
Confidence 99999987 67899999999999998 99667888888877665321 11 234688999999886 22222
Q ss_pred HhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCC
Q 047903 279 SLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLW 358 (430)
Q Consensus 279 ~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 358 (430)
..+++|+.|++++ ..++.++ ..+ ++|+.|++++|.+...| ..+++|+.|++++ +.
T Consensus 178 --~~~~~L~~L~Ls~----N~l~~l~---~~~-~~L~~L~L~~N~l~~l~--------------~~~~~L~~L~Ls~-N~ 232 (622)
T 3g06_A 178 --MLPSGLQELSVSD----NQLASLP---TLP-SELYKLWAYNNRLTSLP--------------ALPSGLKELIVSG-NR 232 (622)
T ss_dssp --CCCTTCCEEECCS----SCCSCCC---CCC-TTCCEEECCSSCCSSCC--------------CCCTTCCEEECCS-SC
T ss_pred --ccCCCCcEEECCC----CCCCCCC---Ccc-chhhEEECcCCcccccC--------------CCCCCCCEEEccC-Cc
Confidence 4567889999885 3444332 123 89999999999886533 2468999999998 56
Q ss_pred CCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 359 LEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 359 l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+..++ ..+++|+.|++++| .++.+|. .+++|+.|++++|.
T Consensus 233 L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 233 LTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred cCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence 77765 56799999999997 5888987 57899999999987
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=9.2e-20 Score=170.56 Aligned_cols=236 Identities=18% Similarity=0.136 Sum_probs=164.0
Q ss_pred eeEEEEeecCCCccccccccCcceEEEEEecCCccc--ccccccc-------cccCCceeecCCCCCc-ccChHhh-hcC
Q 047903 120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLI--HYLSGIE-------NLFLLRYLKLNIPSLK-SLPSPLL-SNL 188 (430)
Q Consensus 120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~--~lp~~~~-------~l~~L~~L~L~~~~i~-~lp~~i~-~~L 188 (430)
++.+.+. ++.. .++..+...++ .|++++|.+. .+|..+. ++++|++|++++|.++ .+|..+| +.+
T Consensus 45 L~~l~l~-~n~l-~~p~~~~~~L~--~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 45 LEYLLKR-VDTE-ADLGQFTDIIK--SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp CTTHHHH-CCTT-CCCHHHHHHHH--HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred ceeEeec-cccc-ccHHHHHHHHh--hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3334444 3344 45555544477 7788888875 4555554 6888889999888887 5676654 788
Q ss_pred CCccEEecCCCCccccchhhccC-----cccceeecCCcccCCCcC----ccCCCCcccceeecCCCCc--chhhhc--C
Q 047903 189 LNLYTLDMPFSYIDHTADEFWKM-----NNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCC--CTEDIL--G 255 (430)
Q Consensus 189 ~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~--~~~~~l--~ 255 (430)
++|++|++++|.++.+|..++.+ ++|++|++++|.+.+ +| +.+++|+.|.+.++..... .+.. + +
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPL 198 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTT
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHH-HHhc
Confidence 88999999888888778777777 888999998888887 55 4455555555544432211 2334 4 8
Q ss_pred CCCCCceEEEEccccccHHHHH-HHhcCCCCCCEEEEecCCCCCCceEEE-E-EcccccCCcceEEEEccccCCcccccc
Q 047903 256 RLPNLRNLRIWGDLSYYQSLLS-QSLCTLTCLESLKLVSESKMPTLSKIV-L-VEYQFPPRLTHLSFSNTELMEDPKSRA 332 (430)
Q Consensus 256 ~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~L~~L~-l-~~~~lp~~L~~L~L~~~~l~~~~~~~~ 332 (430)
.+++|++|++++|.-......+ ..+..+++|+.|++++ ..++... . .+..+ ++|++|++++|.+...|
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~~l-~~L~~L~Ls~N~l~~ip---- 269 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH----NSLRDAAGAPSCDWP-SQLNSLNLSFTGLKQVP---- 269 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT----SCCCSSCCCSCCCCC-TTCCEEECTTSCCSSCC----
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC----CcCCcccchhhhhhc-CCCCEEECCCCccChhh----
Confidence 8999999999999722222333 4556889999999986 2233211 0 23456 89999999999986443
Q ss_pred cCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecC
Q 047903 333 SSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCA 381 (430)
Q Consensus 333 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 381 (430)
...+++|++|++++ +.++.++. ...+++|++|++++++
T Consensus 270 ---------~~~~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 270 ---------KGLPAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ---------SSCCSEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ---------hhccCCceEEECCC-CCCCCChh-HhhCCCCCEEeccCCC
Confidence 11227999999998 66777754 6789999999999875
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=7.1e-18 Score=154.82 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=107.5
Q ss_pred CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
.+..+++|.+. ++.+..++. .+ +++|+ +|++++|.++.++ ..++++++|++|++++|.++.++...|+++++|
T Consensus 26 l~~~l~~L~ls-~n~l~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 26 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQ--VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp SCTTCCEEECT-TCCCCEECTTTTTTCTTCS--EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCCccEEECC-CCcccccCHhHhccccCCc--EEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 45679999999 777766655 44 78899 9999999999776 478999999999999999998875545999999
Q ss_pred cEEecCCCCccccch-hhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 192 YTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 192 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
++|++++|.+..++. .++++++|++|++++|.+.. + ..+.. ++.+++|++|++++|.
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~-------------------~l~~~-~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-F-------------------KLPEY-FSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-C-------------------CCCGG-GGGCTTCCEEECCSSC
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccce-e-------------------cCchh-hccCCCCCEEECCCCC
Confidence 999999999998876 58999999999999999876 1 12334 6777888888888775
No 70
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=4.8e-18 Score=161.48 Aligned_cols=234 Identities=15% Similarity=0.041 Sum_probs=148.5
Q ss_pred eEEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCc-ccChHhhhcCCCccE-EecC
Q 047903 121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLYT-LDMP 197 (430)
Q Consensus 121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~~-L~L~ 197 (430)
+.+... ++....+|..+.++++ .|++++|.++.+|. .|+++++|++|+|++|++. .+|...|.++++|+. +.++
T Consensus 12 ~~v~C~-~~~Lt~iP~~l~~~l~--~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQ-ESKVTEIPSDLPRNAI--ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEE-STTCCSCCTTCCTTCS--EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEec-CCCCCccCcCcCCCCC--EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 345555 6667778888888899 99999999999985 7899999999999999975 577777799999876 5566
Q ss_pred CCCccccch-hhccCcccceeecCCcccCCCcC--ccC--CCCcccceeecCCCCcchhhhcCCCC-CCceEEEEccccc
Q 047903 198 FSYIDHTAD-EFWKMNNLRHLNFGSITLPAHPR--KYC--RSLENLNFISALHPCCCTEDILGRLP-NLRNLRIWGDLSY 271 (430)
Q Consensus 198 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp--~~l--~~L~~L~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~ 271 (430)
+|+++.+|. .+..+++|++|++++|.+.. +| ... .++..|.+.+...........+..+. .++.|+++++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-- 165 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-- 165 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC--
T ss_pred CCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc--
Confidence 679998865 48999999999999999988 66 222 23333433333221122221144443 46677777764
Q ss_pred cHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccE
Q 047903 272 YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKV 350 (430)
Q Consensus 272 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 350 (430)
...++.......+|+.|.+.+ ...++.++- .+..+ ++|+.|++++|++...| ...|.+|+.
T Consensus 166 -i~~i~~~~f~~~~L~~l~l~~---~n~l~~i~~~~f~~l-~~L~~LdLs~N~l~~lp-------------~~~~~~L~~ 227 (350)
T 4ay9_X 166 -IQEIHNSAFNGTQLDELNLSD---NNNLEELPNDVFHGA-SGPVILDISRTRIHSLP-------------SYGLENLKK 227 (350)
T ss_dssp -CCEECTTSSTTEEEEEEECTT---CTTCCCCCTTTTTTE-ECCSEEECTTSCCCCCC-------------SSSCTTCCE
T ss_pred -ccCCChhhccccchhHHhhcc---CCcccCCCHHHhccC-cccchhhcCCCCcCccC-------------hhhhccchH
Confidence 122222223334556666554 334444332 23455 66666666666654432 234566666
Q ss_pred EEEeeCCCCCceEEcCCccccccEeEEee
Q 047903 351 LHLKSMLWLEEWTMGIGAMPKLECLIINP 379 (430)
Q Consensus 351 L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 379 (430)
|.+.++++++.+|. ...+++|+.+++.+
T Consensus 228 L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 228 LRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 66666666665552 34466666666543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.8e-17 Score=151.69 Aligned_cols=123 Identities=21% Similarity=0.133 Sum_probs=93.1
Q ss_pred cceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeec
Q 047903 141 HMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNF 219 (430)
Q Consensus 141 ~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 219 (430)
+.+ .++++++.++.+|..+. .+|++|++++|.++.+|...|+++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 17 ~~~--~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKN--SVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTT--EEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCC--EEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 355 89999999999997665 6899999999999999875559999999999999999999876 588999999999
Q ss_pred CCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 220 GSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 220 ~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
++|.+.. +| ..+++|+.|.+.++......+.. ++.+++|+.|+++++.
T Consensus 93 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 93 TDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNE 144 (270)
T ss_dssp CSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHH-hCcCcCCCEEECCCCc
Confidence 9999988 65 33444555444444333333333 5666666666666654
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=3.7e-17 Score=152.48 Aligned_cols=188 Identities=17% Similarity=0.183 Sum_probs=111.1
Q ss_pred CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L 194 (430)
..++++|.+. ++.+..++ .+ +++|+ +|++++|.++.++. ++.+++|++|++++|.++.+| .+ +++++|++|
T Consensus 40 l~~L~~L~l~-~~~i~~l~-~~~~l~~L~--~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~-~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAF-GTGVTTIE-GVQYLNNLI--GLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AI-AGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECT-TSCCCCCT-TGGGCTTCC--EEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG-TTCTTCCEE
T ss_pred cCCcCEEEee-CCCccCch-hhhccCCCC--EEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hh-cCCCCCCEE
Confidence 4456777776 55555444 33 66677 77777777776666 667777777777777777664 35 777777777
Q ss_pred ecCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcccccc
Q 047903 195 DMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY 272 (430)
Q Consensus 195 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 272 (430)
++++|.++.+|. +..+++|++|++++|.+.. +| +.+++|+.|.+.++.. ..... +..+++|+.|++++|. .
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l--~~~~~-l~~l~~L~~L~l~~n~--l 185 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQV--SDLTP-LANLSKLTTLKADDNK--I 185 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSC--C
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCccCc-CccccCCCCccEEEccCCcC--CCChh-hcCCCCCCEEECCCCc--c
Confidence 777777776665 6777777777777777766 44 5555566555554433 22333 5566666666666664 1
Q ss_pred HHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCC
Q 047903 273 QSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELME 326 (430)
Q Consensus 273 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~ 326 (430)
.. ++ .+..+++|+.|++++ ..+..+. .+..+ ++|+.|++++|.+..
T Consensus 186 ~~-~~-~l~~l~~L~~L~L~~----N~l~~~~-~l~~l-~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SD-IS-PLASLPNLIEVHLKN----NQISDVS-PLANT-SNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-CG-GGGGCTTCCEEECTT----SCCCBCG-GGTTC-TTCCEEEEEEEEEEC
T ss_pred Cc-Ch-hhcCCCCCCEEEccC----CccCccc-cccCC-CCCCEEEccCCeeec
Confidence 11 11 145555666666653 2222221 23444 566666666665543
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=6.8e-17 Score=150.65 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=155.9
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
+++|+ .|++++|.++.+| .+..+++|++|++++|.++.++. + .++++|++|++++|.++.+| .+.++++|++|+
T Consensus 40 l~~L~--~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGIT--TLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCC--EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred cCCcC--EEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 77888 9999999999887 68899999999999999999987 6 99999999999999999887 489999999999
Q ss_pred cCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC
Q 047903 219 FGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK 296 (430)
Q Consensus 219 l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 296 (430)
+++|.+.. +| ..+++|+.|.+.++.. ..... ++.+++|+.|++++|. ... ++. +..+++|+.|++++
T Consensus 114 l~~n~l~~-~~~l~~l~~L~~L~l~~n~l--~~~~~-l~~l~~L~~L~l~~n~--l~~-~~~-l~~l~~L~~L~l~~--- 182 (308)
T 1h6u_A 114 LTSTQITD-VTPLAGLSNLQVLYLDLNQI--TNISP-LAGLTNLQYLSIGNAQ--VSD-LTP-LANLSKLTTLKADD--- 182 (308)
T ss_dssp CTTSCCCC-CGGGTTCTTCCEEECCSSCC--CCCGG-GGGCTTCCEEECCSSC--CCC-CGG-GTTCTTCCEEECCS---
T ss_pred CCCCCCCC-chhhcCCCCCCEEECCCCcc--CcCcc-ccCCCCccEEEccCCc--CCC-Chh-hcCCCCCCEEECCC---
Confidence 99999998 77 7888888888777654 33445 7889999999999986 222 222 78899999999985
Q ss_pred CCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE
Q 047903 297 MPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT 363 (430)
Q Consensus 297 ~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 363 (430)
..++.+. .+..+ ++|++|++++|.+...+ ....+++|+.|++++ +.+...+
T Consensus 183 -n~l~~~~-~l~~l-~~L~~L~L~~N~l~~~~------------~l~~l~~L~~L~l~~-N~i~~~~ 233 (308)
T 1h6u_A 183 -NKISDIS-PLASL-PNLIEVHLKNNQISDVS------------PLANTSNLFIVTLTN-QTITNQP 233 (308)
T ss_dssp -SCCCCCG-GGGGC-TTCCEEECTTSCCCBCG------------GGTTCTTCCEEEEEE-EEEECCC
T ss_pred -CccCcCh-hhcCC-CCCCEEEccCCccCccc------------cccCCCCCCEEEccC-CeeecCC
Confidence 3344332 35677 99999999999886532 246789999999998 3344433
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1.5e-17 Score=149.23 Aligned_cols=206 Identities=15% Similarity=0.077 Sum_probs=136.8
Q ss_pred CccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCC-CcccChHhhhcCCCccEEecCC-CCccccch-
Q 047903 131 DFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPS-LKSLPSPLLSNLLNLYTLDMPF-SYIDHTAD- 206 (430)
Q Consensus 131 ~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp~- 206 (430)
...+|. +.++++ .|++++|.++.+|. .|+++++|++|++++|. ++.+|+..|+++++|++|++++ |.++.+|.
T Consensus 23 l~~ip~-~~~~l~--~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LPPSTQ--TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CCTTCC--EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CCCccc--EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 445666 666888 89999999998875 78899999999999997 8888875559999999999998 78888875
Q ss_pred hhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc-ccccHHHHHHHhcCC
Q 047903 207 EFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD-LSYYQSLLSQSLCTL 283 (430)
Q Consensus 207 ~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~l 283 (430)
.+.++++|++|++++|.+.+ +| ..+++|+ .|+.|+++++ . .....+..+..+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~----------------------~L~~L~l~~N~~--l~~i~~~~~~~l 154 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPDLTKVYSTD----------------------IFFILEITDNPY--MTSIPVNAFQGL 154 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCCCTTCCBCC----------------------SEEEEEEESCTT--CCEECTTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccccccccccc----------------------cccEEECCCCcc--hhhcCcccccch
Confidence 47889999999999998887 65 3333333 1225555554 2 111112234455
Q ss_pred CCCC-EEEEecCCCCCCceEEEEEcccccCCcceEEEEccc-cCCcccccccCCCeEEEcCCCC-CcccEEEEeeCCCCC
Q 047903 284 TCLE-SLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTE-LMEDPKSRASSSRKLTCGSDGF-PNLKVLHLKSMLWLE 360 (430)
Q Consensus 284 ~~L~-~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~ 360 (430)
++|+ .|++++ ..++.+.-..... ++|+.|++++|. +...+ ......+ ++|+.|++++ +.+.
T Consensus 155 ~~L~~~L~l~~----n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~----------~~~~~~l~~~L~~L~l~~-N~l~ 218 (239)
T 2xwt_C 155 CNETLTLKLYN----NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVID----------KDAFGGVYSGPSLLDVSQ-TSVT 218 (239)
T ss_dssp BSSEEEEECCS----CCCCEECTTTTTT-CEEEEEECTTCTTCCEEC----------TTTTTTCSBCCSEEECTT-CCCC
T ss_pred hcceeEEEcCC----CCCcccCHhhcCC-CCCCEEEcCCCCCcccCC----------HHHhhccccCCcEEECCC-Cccc
Confidence 5555 555552 2334332111223 577888888884 54321 0012445 7888888887 5666
Q ss_pred ceEEcCCccccccEeEEeecCC
Q 047903 361 EWTMGIGAMPKLECLIINPCAY 382 (430)
Q Consensus 361 ~~~~~~~~~~~L~~L~l~~c~~ 382 (430)
.++.. .+++|+.|.+.++..
T Consensus 219 ~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 219 ALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCCT--TCTTCSEEECTTC--
T ss_pred cCChh--HhccCceeeccCccC
Confidence 66543 688888888887643
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=2.7e-17 Score=151.91 Aligned_cols=167 Identities=19% Similarity=0.105 Sum_probs=114.4
Q ss_pred CCCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903 117 RKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD 195 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~ 195 (430)
..+++.+.+. ++....++..+.++++ +|++++|.++.++ ..|..+++|++|++++|.++.+|. . +.+++|++|+
T Consensus 9 l~~l~~l~~~-~~~l~~ip~~~~~~l~--~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCD-KRNLTALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECT-TSCCSSCCSCCCTTCC--EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEE
T ss_pred cCCccEEECC-CCCCCcCCCCCCCCCC--EEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEE
Confidence 4567778877 6677777777777888 8888888888664 678888888889988888888764 3 7888888999
Q ss_pred cCCCCccccchhhccCcccceeecCCcccCCCcC-c---cCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccc
Q 047903 196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-K---YCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSY 271 (430)
Q Consensus 196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~---~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 271 (430)
+++|.++.+|..+..+++|++|++++|.+.. +| + .+++|+.|.+.++......... +..+++|+.|++++|.
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~-- 159 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGL-LTPTPKLEKLSLANNN-- 159 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSC--
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhh-cccccCCCEEECCCCc--
Confidence 9888888888888888888888888888887 55 3 3344444444433322222233 5666677777776664
Q ss_pred cHHHHHHHhcCCCCCCEEEEe
Q 047903 272 YQSLLSQSLCTLTCLESLKLV 292 (430)
Q Consensus 272 ~~~~~~~~l~~l~~L~~L~l~ 292 (430)
.....+..+..+++|+.|+++
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECC
T ss_pred CCccCHHHhcCcCCCCEEECC
Confidence 221111233445555555555
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=3.4e-17 Score=146.97 Aligned_cols=205 Identities=17% Similarity=0.226 Sum_probs=155.6
Q ss_pred ccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC-ccccch-hhccCcccceeecCC-cccCCCcCc
Q 047903 154 LIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY-IDHTAD-EFWKMNNLRHLNFGS-ITLPAHPRK 230 (430)
Q Consensus 154 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~l~~-~~~~~~lp~ 230 (430)
++.+|. +.. +|++|++++|+++.+|+..|+++++|++|++++|. ++.+|. .+.++++|++|++++ |.+.. +|
T Consensus 23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~- 97 (239)
T 2xwt_C 23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-ID- 97 (239)
T ss_dssp CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-EC-
T ss_pred ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cC-
Confidence 677777 443 89999999999999987655999999999999996 998886 588999999999998 77765 32
Q ss_pred cCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCC---EEEEecCCCCCCceEEEE-E
Q 047903 231 YCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLE---SLKLVSESKMPTLSKIVL-V 306 (430)
Q Consensus 231 ~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~L~~L~l-~ 306 (430)
... +..+++|++|++.++. .. .++. +..+++|+ .|++++ .+.++.+.- +
T Consensus 98 -------------------~~~-f~~l~~L~~L~l~~n~--l~-~lp~-~~~l~~L~~L~~L~l~~---N~~l~~i~~~~ 150 (239)
T 2xwt_C 98 -------------------PDA-LKELPLLKFLGIFNTG--LK-MFPD-LTKVYSTDIFFILEITD---NPYMTSIPVNA 150 (239)
T ss_dssp -------------------TTS-EECCTTCCEEEEEEEC--CC-SCCC-CTTCCBCCSEEEEEEES---CTTCCEECTTT
T ss_pred -------------------HHH-hCCCCCCCEEeCCCCC--Cc-cccc-cccccccccccEEECCC---CcchhhcCccc
Confidence 223 6778888999998885 22 2333 66777777 999986 336776653 3
Q ss_pred cccccCCcc-eEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCcc-ccccEeEEeecCCC
Q 047903 307 EYQFPPRLT-HLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAM-PKLECLIINPCAYL 383 (430)
Q Consensus 307 ~~~lp~~L~-~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L~~L~l~~c~~l 383 (430)
+..+ ++|+ .|++++|.+...| ......++|+.|+++++.+++.++.. ...+ ++|+.|+++++ .+
T Consensus 151 ~~~l-~~L~~~L~l~~n~l~~i~-----------~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l 217 (239)
T 2xwt_C 151 FQGL-CNETLTLKLYNNGFTSVQ-----------GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SV 217 (239)
T ss_dssp TTTT-BSSEEEEECCSCCCCEEC-----------TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CC
T ss_pred ccch-hcceeEEEcCCCCCcccC-----------HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-cc
Confidence 6678 8999 9999999875332 11112268999999985457777543 3567 99999999995 58
Q ss_pred CcCCCCCCCCCCCCEEEEecCh
Q 047903 384 KKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 384 ~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
+.+|.. .+++|+.|+++++.
T Consensus 218 ~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 218 TALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCT--TCTTCSEEECTTC-
T ss_pred ccCChh--HhccCceeeccCcc
Confidence 888865 68899999999876
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=3.7e-17 Score=149.70 Aligned_cols=147 Identities=22% Similarity=0.231 Sum_probs=100.9
Q ss_pred CCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD 195 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~ 195 (430)
..+++.+.+. ++.+..++.-. +++|+ +|++++|.++.++ .++.+++|++|++++|.++.+|...|+++++|++|+
T Consensus 40 l~~L~~L~l~-~~~i~~~~~l~~l~~L~--~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIAN-NSDIKSVQGIQYLPNVR--YLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECT-TSCCCCCTTGGGCTTCC--EEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeC-CCCcccccccccCCCCc--EEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4567778777 66555443322 78888 8888888887754 677888888888888888888766558888888888
Q ss_pred cCCCCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 196 MPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 196 L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
+++|.++.+|.. ++++++|++|++++|.+.+ +| +.+++|+.|.+.++......... ++.+++|+.|++++|.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGV-FDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHH-hcCCccCCEEECCCCc
Confidence 888888877665 6788888888888888776 54 33444555544444333222333 5556666666666654
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=3.5e-18 Score=161.39 Aligned_cols=241 Identities=16% Similarity=0.159 Sum_probs=164.8
Q ss_pred CeeEEEEeecCCCccccccc----cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcc--cChHhhhcCCCcc
Q 047903 119 NVKRINVFEKQSDFAHLDDY----DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKS--LPSPLLSNLLNLY 192 (430)
Q Consensus 119 ~~r~L~l~~~~~~~~~~~~~----~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~~~L~~L~ 192 (430)
..+++.+. .+... +..+ .++++ .|++++|.+...+..+..+++|++|++++|.++. +|..+ .++++|+
T Consensus 48 ~~~~l~l~-~~~~~--~~~~~~~~~~~l~--~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLT-GKNLH--PDVTGRLLSQGVI--AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQ 121 (336)
T ss_dssp TSSEEECT-TCBCC--HHHHHHHHHTTCS--EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCS
T ss_pred hheeeccc-cccCC--HHHHHhhhhccce--EEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCC
Confidence 35677776 44332 2222 37888 8899999988777667788999999999998773 66666 8999999
Q ss_pred EEecCCCCcc-ccchhhccCcccceeecCCc-ccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcccc
Q 047903 193 TLDMPFSYID-HTADEFWKMNNLRHLNFGSI-TLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLS 270 (430)
Q Consensus 193 ~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~-~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 270 (430)
+|++++|.+. ..|..++++++|++|++++| .+.. ...... +..+++|++|++++|..
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~--------------------~~l~~~-~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--------------------FALQTL-LSSCSRLDELNLSWCFD 180 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH--------------------HHHHHH-HHHCTTCCEEECCCCTT
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH--------------------HHHHHH-HhcCCCCCEEcCCCCCC
Confidence 9999999777 56777888999999988888 4443 012333 77789999999999832
Q ss_pred ccHHHHHHHhcCCC-CCCEEEEecCCCCC-CceE--EEEEcccccCCcceEEEEccc-cCCcccccccCCCeEEEcCCCC
Q 047903 271 YYQSLLSQSLCTLT-CLESLKLVSESKMP-TLSK--IVLVEYQFPPRLTHLSFSNTE-LMEDPKSRASSSRKLTCGSDGF 345 (430)
Q Consensus 271 ~~~~~~~~~l~~l~-~L~~L~l~~~~~~~-~L~~--L~l~~~~lp~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~~~~~~ 345 (430)
.....++..+..++ +|+.|++++ +. .+.. +.-.+..+ ++|++|++++|. +.... ......+
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~---~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~----------~~~l~~l 246 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSG---YRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDC----------FQEFFQL 246 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCS---CGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGG----------GGGGGGC
T ss_pred cChHHHHHHHHhcccCCCEEEeCC---CcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHH----------HHHHhCC
Confidence 22234677788899 999999986 32 2221 11134567 999999999998 43221 1123467
Q ss_pred CcccEEEEeeCCCCCceE-EcCCccccccEeEEeecCCCCcCCC-CCCCC-CCCCEEEEecCh
Q 047903 346 PNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCAYLKKMPE-QPWCI-KSLNKFNCWWPQ 405 (430)
Q Consensus 346 ~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l-~~L~~L~l~~~~ 405 (430)
++|++|+++++..+.... ...+.+++|+.|++.+| ++. ++..+ .+++.|++++|.
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCC
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEeccc
Confidence 899999999876433221 12356899999999998 332 23333 236666676554
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=6.8e-17 Score=149.24 Aligned_cols=192 Identities=17% Similarity=0.103 Sum_probs=141.1
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
+++++ .++++++.++.+|..+. +++++|++++|.++.++...|.++++|++|++++|.++.+|.. +.+++|++|+
T Consensus 9 l~~l~--~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHL--EVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCC--EEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cCCcc--EEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 55667 89999999999998765 6899999999999988655459999999999999999998874 8899999999
Q ss_pred cCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC
Q 047903 219 FGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES 295 (430)
Q Consensus 219 l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 295 (430)
+++|.+.. +| ..+++|+.|.+.++......+.. ++.+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 84 Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~-- 157 (290)
T 1p9a_G 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLAN-- 157 (290)
T ss_dssp CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTT--
T ss_pred CCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCCC--CCccChhhcccccCCCEEECCC--
Confidence 99999987 88 56667777766665544344455 8888889999988886 3333334456777788888774
Q ss_pred CCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEee
Q 047903 296 KMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKS 355 (430)
Q Consensus 296 ~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 355 (430)
..++.+.- .+..+ ++|+.|++++|.+...| ......++|+.+++.+
T Consensus 158 --N~l~~l~~~~~~~l-~~L~~L~L~~N~l~~ip-----------~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 158 --NNLTELPAGLLNGL-ENLDTLLLQENSLYTIP-----------KGFFGSHLLPFAFLHG 204 (290)
T ss_dssp --SCCSCCCTTTTTTC-TTCCEEECCSSCCCCCC-----------TTTTTTCCCSEEECCS
T ss_pred --CcCCccCHHHhcCc-CCCCEEECCCCcCCccC-----------hhhcccccCCeEEeCC
Confidence 33443322 23456 77888888887765433 1123445677777765
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=5e-17 Score=148.84 Aligned_cols=202 Identities=18% Similarity=0.143 Sum_probs=134.3
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCccccee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHL 217 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 217 (430)
+++++ .|++++|.++.++ .++.+++|++|++++|.++.++ .+ +++++|++|++++|.++.+|.. ++++++|++|
T Consensus 40 l~~L~--~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSID--QIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCC--EEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccee--eeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 67777 8889998887665 4788899999999999988874 56 8999999999999988888765 6889999999
Q ss_pred ecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903 218 NFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 218 ~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
++++|.+.+ +| +.+++|+.|.+.++......... ++.+++|+.|++++|.
T Consensus 115 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~------------------------ 168 (272)
T 3rfs_A 115 VLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGV-FDKLTNLTELDLSYNQ------------------------ 168 (272)
T ss_dssp ECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC------------------------
T ss_pred ECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHH-hccCccCCEEECCCCC------------------------
Confidence 999998887 44 23333444433333222222222 3444455555554442
Q ss_pred CCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccc
Q 047903 294 ESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKL 372 (430)
Q Consensus 294 ~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 372 (430)
++.+.- .+..+ ++|+.|++++|.+...+ ......+++|+.|++++++ + .+.+|+|
T Consensus 169 ------l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~-~------~~~~~~l 224 (272)
T 3rfs_A 169 ------LQSLPEGVFDKL-TQLKDLRLYQNQLKSVP----------DGVFDRLTSLQYIWLHDNP-W------DCTCPGI 224 (272)
T ss_dssp ------CCCCCTTTTTTC-TTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSC-B------CCCTTTT
T ss_pred ------cCccCHHHhcCC-ccCCEEECCCCcCCccC----------HHHHhCCcCCCEEEccCCC-c------cccCcHH
Confidence 221110 23456 78888888888775432 0113567888888888742 2 2457788
Q ss_pred cEeEEeecCCCCcCCCCCCCCCC
Q 047903 373 ECLIINPCAYLKKMPEQPWCIKS 395 (430)
Q Consensus 373 ~~L~l~~c~~l~~lp~~l~~l~~ 395 (430)
+.|.+..+.....+|..++.++.
T Consensus 225 ~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHhCCCcccCcccccCC
Confidence 88888877666677877766554
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=2.9e-16 Score=141.97 Aligned_cols=145 Identities=19% Similarity=0.205 Sum_probs=96.7
Q ss_pred eeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903 120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~ 198 (430)
.+++.+. +.....++..+.++++ .|++++|.++.++ ..++++++|++|++++|.++.+++..|.++++|++|++++
T Consensus 16 ~~~l~~~-~~~l~~~p~~~~~~l~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQ-GKSLDSVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECT-TCCCSSCCSCCCTTCC--EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecC-CCCccccCCCCCCCCC--EEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4456666 6666667776677788 8888888887665 4678888888888888888877665558888888888888
Q ss_pred CCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 199 SYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 199 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
|.++.+|.. +..+++|++|++++|.+.. +| ..+++|+.|.+.++......... ++.+++|+.|++++|.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGA-FDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHH-cCcCcCCCEEECCCCc
Confidence 888877654 6788888888888888876 55 22334444433333322222223 4555555555555553
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=1.7e-17 Score=163.56 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=26.7
Q ss_pred cccccEeEEeecCCCC-----cCCCCCCCCCCCCEEEEecCh
Q 047903 369 MPKLECLIINPCAYLK-----KMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 369 ~~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~ 405 (430)
.++|++|++++|. ++ .+|..+..+++|++|++++|+
T Consensus 369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 4578888888774 44 566667777888888888877
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=1.5e-16 Score=151.08 Aligned_cols=233 Identities=14% Similarity=0.044 Sum_probs=164.0
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCcc-ccchh-hccCcccce-eecCCc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYID-HTADE-FWKMNNLRH-LNFGSI 222 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~-i~~L~~L~~-L~l~~~ 222 (430)
+++.+++.++.+|..+ .+++++|+|++|+|+.+|+..|+++++|++|+|++|.+. .+|.+ +.+++++++ +.+++|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 6788889999999876 368999999999999999876699999999999999864 56654 788888776 556678
Q ss_pred ccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH-HHhcCC-CCCCEEEEecCCC
Q 047903 223 TLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS-QSLCTL-TCLESLKLVSESK 296 (430)
Q Consensus 223 ~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l-~~L~~L~l~~~~~ 296 (430)
++.. +| ..+++|+.|.+.++......... +....++..|++.++. ....++ ..+..+ ..++.|+++
T Consensus 91 ~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~l~l~~~~--~i~~l~~~~f~~~~~~l~~L~L~---- 162 (350)
T 4ay9_X 91 NLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLN---- 162 (350)
T ss_dssp TCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCCT-TCCBSSCEEEEEESCT--TCCEECTTSSTTSBSSCEEEECC----
T ss_pred cccc-cCchhhhhccccccccccccccccCCchh-hcccchhhhhhhcccc--ccccccccchhhcchhhhhhccc----
Confidence 8877 65 45666777766666542222223 4445566677776653 222221 233444 357777777
Q ss_pred CCCceEEEEEcccccCCcceEEEEcc-ccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEe
Q 047903 297 MPTLSKIVLVEYQFPPRLTHLSFSNT-ELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECL 375 (430)
Q Consensus 297 ~~~L~~L~l~~~~lp~~L~~L~L~~~-~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 375 (430)
...++.+.-..... .+|++|++.++ .+...| . .....+++|+.|++++ ++++.++. +.+.+|+.|
T Consensus 163 ~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~------~----~~f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L 228 (350)
T 4ay9_X 163 KNGIQEIHNSAFNG-TQLDELNLSDNNNLEELP------N----DVFHGASGPVILDISR-TRIHSLPS--YGLENLKKL 228 (350)
T ss_dssp SSCCCEECTTSSTT-EEEEEEECTTCTTCCCCC------T----TTTTTEECCSEEECTT-SCCCCCCS--SSCTTCCEE
T ss_pred cccccCCChhhccc-cchhHHhhccCCcccCCC------H----HHhccCcccchhhcCC-CCcCccCh--hhhccchHh
Confidence 35566553222234 57888888754 443322 0 0135678999999998 56777764 458999999
Q ss_pred EEeecCCCCcCCCCCCCCCCCCEEEEec
Q 047903 376 IINPCAYLKKMPEQPWCIKSLNKFNCWW 403 (430)
Q Consensus 376 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 403 (430)
.+.+|..++.+|. +..+++|+.+++..
T Consensus 229 ~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 229 RARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp ECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 9999999999995 88899999999964
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=4.7e-16 Score=143.75 Aligned_cols=169 Identities=19% Similarity=0.152 Sum_probs=95.9
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
+++|+ .|++++|.+..++. ++.+++|++|++++|+++.++. + +++++|++|++++|.++.+|. ++.+++|++|+
T Consensus 45 l~~L~--~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSID--QIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCC--EEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred cCccc--EEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 44444 55555555555432 5555556666666655555544 4 555666666666555555544 55555566666
Q ss_pred cCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC
Q 047903 219 FGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK 296 (430)
Q Consensus 219 l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 296 (430)
+++|.+.. ++ ..+++|+.|.+.++.... +.. ++.+++|+.|++++|. ..... . +..+++|+.|++++
T Consensus 119 L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~--l~~~~-~-l~~l~~L~~L~L~~--- 187 (291)
T 1h6t_A 119 LEHNGISD-INGLVHLPQLESLYLGNNKITD--ITV-LSRLTKLDTLSLEDNQ--ISDIV-P-LAGLTKLQNLYLSK--- 187 (291)
T ss_dssp CTTSCCCC-CGGGGGCTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECCSSC--CCCCG-G-GTTCTTCCEEECCS---
T ss_pred CCCCcCCC-ChhhcCCCCCCEEEccCCcCCc--chh-hccCCCCCEEEccCCc--cccch-h-hcCCCccCEEECCC---
Confidence 66555555 44 445555555444443211 244 6677777777777775 22111 1 66777777777764
Q ss_pred CCCceEEEEEcccccCCcceEEEEccccCCc
Q 047903 297 MPTLSKIVLVEYQFPPRLTHLSFSNTELMED 327 (430)
Q Consensus 297 ~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~ 327 (430)
..++.+. .+..+ ++|+.|++++|.+...
T Consensus 188 -N~i~~l~-~l~~l-~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 188 -NHISDLR-ALAGL-KNLDVLELFSQECLNK 215 (291)
T ss_dssp -SCCCBCG-GGTTC-TTCSEEEEEEEEEECC
T ss_pred -CcCCCCh-hhccC-CCCCEEECcCCcccCC
Confidence 3344332 35566 7888888888876543
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=2.9e-17 Score=162.02 Aligned_cols=148 Identities=18% Similarity=0.127 Sum_probs=78.1
Q ss_pred cceEEEEEecCCccc-----ccccccccccCCceeecCCCCCccc-ChHh----hhcCCCccEEecCCCCccc-----cc
Q 047903 141 HMHSLVLDLGSLVLI-----HYLSGIENLFLLRYLKLNIPSLKSL-PSPL----LSNLLNLYTLDMPFSYIDH-----TA 205 (430)
Q Consensus 141 ~L~~L~L~l~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i----~~~L~~L~~L~L~~~~l~~-----lp 205 (430)
+|+ +|++++|.++ .++..+..+++|++|++++|.++.. +..+ +...++|++|++++|.++. ++
T Consensus 86 ~L~--~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQ--KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp CCC--EEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cee--EEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 455 6666666655 3355566666666666666665532 2222 1224456666666665553 34
Q ss_pred hhhccCcccceeecCCcccCCCcC--------ccCCCCcccceeecCCCCc----chhhhcCCCCCCceEEEEccccccH
Q 047903 206 DEFWKMNNLRHLNFGSITLPAHPR--------KYCRSLENLNFISALHPCC----CTEDILGRLPNLRNLRIWGDLSYYQ 273 (430)
Q Consensus 206 ~~i~~L~~L~~L~l~~~~~~~~lp--------~~l~~L~~L~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~ 273 (430)
..+..+++|++|++++|.+....+ ...++|+.|.+.++..... .+.. +..+++|++|+++++. ..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~--l~ 240 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNK--LG 240 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSB--CH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCc--CC
Confidence 445566667777776666544211 1244666666555543222 1233 5566777777777664 22
Q ss_pred HH----HHH-HhcCCCCCCEEEEec
Q 047903 274 SL----LSQ-SLCTLTCLESLKLVS 293 (430)
Q Consensus 274 ~~----~~~-~l~~l~~L~~L~l~~ 293 (430)
.. +.. ....+++|+.|++++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred hHHHHHHHHHHhcCCCCceEEECcC
Confidence 21 112 222456666666654
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=8e-16 Score=139.02 Aligned_cols=141 Identities=21% Similarity=0.229 Sum_probs=101.9
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL 224 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 224 (430)
.++++++.++.+|..+. .+++.|++++|.++.++...|+++++|++|++++|.++.++.. +.++++|++|++++|.+
T Consensus 18 ~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 89999999999998776 5899999999999988765459999999999999999988665 89999999999999999
Q ss_pred CCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEe
Q 047903 225 PAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLV 292 (430)
Q Consensus 225 ~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 292 (430)
.. +| ..+++|+.|.+.++......... +..+++|+.|++++|. .....+..+..+++|+.|+++
T Consensus 96 ~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 96 AS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECC
T ss_pred cc-cChhHhcccCCCCEEEcCCCcCCCcChhH-hccCCcccEEECcCCc--CCccCHHHcCcCcCCCEEECC
Confidence 88 65 34455555555444433223333 5666777777777664 222222234455555555554
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=1.2e-15 Score=155.27 Aligned_cols=279 Identities=14% Similarity=0.085 Sum_probs=161.5
Q ss_pred CCeeEEEEeecCCC-c--cccccc--cCcceEEEEEecCCcccc-----cccccccccCCceeecCCCCCc-----ccCh
Q 047903 118 KNVKRINVFEKQSD-F--AHLDDY--DSHMHSLVLDLGSLVLIH-----YLSGIENLFLLRYLKLNIPSLK-----SLPS 182 (430)
Q Consensus 118 ~~~r~L~l~~~~~~-~--~~~~~~--~~~L~~L~L~l~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~-----~lp~ 182 (430)
.++++|.+. .+.. . .+.... +++|+ +|++++|.++. ++.....+++|++|++++|.++ .++.
T Consensus 138 ~~L~~L~L~-~~~~~~~~~l~~~~~~~~~L~--~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 214 (592)
T 3ogk_B 138 DDLETLKLD-KCSGFTTDGLLSIVTHCRKIK--TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214 (592)
T ss_dssp GGCCEEEEE-SCEEEEHHHHHHHHHHCTTCS--EEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred ccCcEEECc-CCCCcCHHHHHHHHhhCCCCC--EEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence 348899888 5431 1 111111 68888 89999998653 3334567888999999998876 3344
Q ss_pred HhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC--------------------------CCcC---ccCC
Q 047903 183 PLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP--------------------------AHPR---KYCR 233 (430)
Q Consensus 183 ~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~--------------------------~~lp---~~l~ 233 (430)
.+ .++++|++|++++|.+..+|..+.++++|++|+++++... ..+| ..++
T Consensus 215 ~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~ 293 (592)
T 3ogk_B 215 IA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA 293 (592)
T ss_dssp HH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGG
T ss_pred HH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcC
Confidence 44 7889999999999988888888888888888888743221 0123 3344
Q ss_pred CCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec----------CCC-------
Q 047903 234 SLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS----------ESK------- 296 (430)
Q Consensus 234 ~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~------- 296 (430)
+|+.|.+.++......+...++.+++|++|++.++- ....++.....+++|+.|++.+ ...
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 555555555442222232225777888888887442 3344444556677888888872 111
Q ss_pred -----CCCceEEEE-----------Ecc-cccCCcceEEEEc----cccCCccc--------ccccCCCeEEEc------
Q 047903 297 -----MPTLSKIVL-----------VEY-QFPPRLTHLSFSN----TELMEDPK--------SRASSSRKLTCG------ 341 (430)
Q Consensus 297 -----~~~L~~L~l-----------~~~-~lp~~L~~L~L~~----~~l~~~~~--------~~~~~~~~~~~~------ 341 (430)
+++|+.|.+ .+. .+ ++|++|++++ +.+...|. ........+...
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 677888877 122 25 7788888873 23332211 000111111110
Q ss_pred --------CCCCCcccEEEEeeCCCCCc--eEEcCCccccccEeEEeecCCCCc--CCCCCCCCCCCCEEEEecCh
Q 047903 342 --------SDGFPNLKVLHLKSMLWLEE--WTMGIGAMPKLECLIINPCAYLKK--MPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 342 --------~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~ 405 (430)
...+++|+.|+++++. +.. ++.....+++|++|++++|+ ++. ++.....+++|++|++++|+
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 0124555555555432 222 11112346777777777776 332 33334456777777777776
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=1.3e-16 Score=150.55 Aligned_cols=232 Identities=17% Similarity=0.118 Sum_probs=163.1
Q ss_pred CCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccc--cccccccccCCceeecCCCCCc-ccChHhhhcCCCcc
Q 047903 118 KNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIH--YLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLY 192 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~--lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~ 192 (430)
..++.+.+. ++........+ +++|+ .|++++|.++. +|..+..+++|++|++++|.++ ..|..+ +++++|+
T Consensus 70 ~~l~~L~l~-~n~l~~~~~~~~~~~~L~--~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCP-RSFMDQPLAEHFSPFRVQ--HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLV 145 (336)
T ss_dssp TTCSEEECT-TCEECSCCCSCCCCBCCC--EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCS
T ss_pred ccceEEEcC-CccccccchhhccCCCCC--EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCC
Confidence 678899988 66555444444 88999 99999999873 7788899999999999999988 557777 9999999
Q ss_pred EEecCCC-Ccc--ccchhhccCcccceeecCCc-ccCCCcCccCCCCcccceeecCCCCcchhhhcCCCC-CCceEEEEc
Q 047903 193 TLDMPFS-YID--HTADEFWKMNNLRHLNFGSI-TLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLP-NLRNLRIWG 267 (430)
Q Consensus 193 ~L~L~~~-~l~--~lp~~i~~L~~L~~L~l~~~-~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~ 267 (430)
+|++++| .++ .+|..+.++++|++|++++| .+... ..... ++.++ +|++|++++
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--------------------~~~~~-~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK--------------------HVQVA-VAHVSETITQLNLSG 204 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--------------------HHHHH-HHHSCTTCCEEECCS
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--------------------HHHHH-HHhcccCCCEEEeCC
Confidence 9999999 787 47877899999999999999 76540 12333 67778 889999988
Q ss_pred cc-cccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCC
Q 047903 268 DL-SYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGF 345 (430)
Q Consensus 268 ~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (430)
+. ......++..+..+++|+.|++++ +..+..-.. .+..+ ++|++|++++|....+. . ......+
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~---~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~--------~-~~~l~~~ 271 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSD---SVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPE--------T-LLELGEI 271 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTT---CTTCCGGGGGGGGGC-TTCCEEECTTCTTCCGG--------G-GGGGGGC
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCC---CCcCCHHHHHHHhCC-CCCCEeeCCCCCCCCHH--------H-HHHHhcC
Confidence 74 122356677777888999999986 332221100 44567 89999999999521111 0 0113458
Q ss_pred CcccEEEEeeCCCCCceEEcCCcc-ccccEeEEeecCCCCcCCCCCC
Q 047903 346 PNLKVLHLKSMLWLEEWTMGIGAM-PKLECLIINPCAYLKKMPEQPW 391 (430)
Q Consensus 346 ~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~lp~~l~ 391 (430)
++|+.|+++++ +..-. ...+ .+|+.|++++|.--...|..+.
T Consensus 272 ~~L~~L~l~~~--i~~~~--~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 272 PTLKTLQVFGI--VPDGT--LQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCCEEECTTS--SCTTC--HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCEEeccCc--cCHHH--HHHHHhhCcceEEecccCccccCCccc
Confidence 99999999986 22110 1123 3477788876543334454443
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=2e-16 Score=151.01 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=46.7
Q ss_pred CcceEEEEEecCCcccccc-----ccccccc-CCceeecCCCCCcccC-hHhhhcC-----CCccEEecCCCCccccchh
Q 047903 140 SHMHSLVLDLGSLVLIHYL-----SGIENLF-LLRYLKLNIPSLKSLP-SPLLSNL-----LNLYTLDMPFSYIDHTADE 207 (430)
Q Consensus 140 ~~L~~L~L~l~~~~l~~lp-----~~~~~l~-~L~~L~L~~~~i~~lp-~~i~~~L-----~~L~~L~L~~~~l~~lp~~ 207 (430)
++|+ .|++++|.++..+ ..+..++ +|++|++++|.++... ..+ +.+ ++|++|++++|.++..+..
T Consensus 22 ~~L~--~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 22 HGVT--SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TTCC--EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCce--EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHHH
Confidence 3366 6666666665443 3455555 6666666666666542 223 443 6666666666666543322
Q ss_pred -----hccC-cccceeecCCcccCC
Q 047903 208 -----FWKM-NNLRHLNFGSITLPA 226 (430)
Q Consensus 208 -----i~~L-~~L~~L~l~~~~~~~ 226 (430)
+..+ ++|++|++++|.+..
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHHHHhCCCCccEEECcCCcCCc
Confidence 2333 566666666666654
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=4.1e-17 Score=157.18 Aligned_cols=234 Identities=16% Similarity=0.078 Sum_probs=144.2
Q ss_pred ccccc--cCcceEEEEEecCCcccc-----cccccccccCCceeecCCCCCcc----cChHh------hhcCCCccEEec
Q 047903 134 HLDDY--DSHMHSLVLDLGSLVLIH-----YLSGIENLFLLRYLKLNIPSLKS----LPSPL------LSNLLNLYTLDM 196 (430)
Q Consensus 134 ~~~~~--~~~L~~L~L~l~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~~----lp~~i------~~~L~~L~~L~L 196 (430)
+...+ +++|+ .|++++|.++. ++..+..+++|++|++++|.+.. +|..+ |.++++|++|+|
T Consensus 24 l~~~l~~~~~L~--~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 24 VFAVLLEDDSVK--EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TSHHHHHCSCCC--EEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHhcCCCcc--EEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 44444 67788 89999998773 34557788999999999876543 34433 268899999999
Q ss_pred CCCCccc-----cchhhccCcccceeecCCcccCCC----cC---ccC---------CCCcccceeecCCCCcchh---h
Q 047903 197 PFSYIDH-----TADEFWKMNNLRHLNFGSITLPAH----PR---KYC---------RSLENLNFISALHPCCCTE---D 252 (430)
Q Consensus 197 ~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~----lp---~~l---------~~L~~L~~~~~~~~~~~~~---~ 252 (430)
++|.+.. +|..+.++++|++|++++|.+... ++ ..+ ++|+.|.+.++........ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9998776 777888999999999999987642 11 112 5666666665554322222 1
Q ss_pred hcCCCCCCceEEEEcccccc--HHHHHH-HhcCCCCCCEEEEecCCCCCCc-----eEEEEEcccccCCcceEEEEcccc
Q 047903 253 ILGRLPNLRNLRIWGDLSYY--QSLLSQ-SLCTLTCLESLKLVSESKMPTL-----SKIVLVEYQFPPRLTHLSFSNTEL 324 (430)
Q Consensus 253 ~l~~l~~L~~L~l~~~~~~~--~~~~~~-~l~~l~~L~~L~l~~~~~~~~L-----~~L~l~~~~lp~~L~~L~L~~~~l 324 (430)
.+..+++|++|++++|.-.. ...+.. .+..+++|+.|++++ ..+ ..+.-++..+ ++|++|+|++|.+
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~----n~l~~~g~~~l~~~l~~~-~~L~~L~L~~n~i 256 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD----NTFTHLGSSALAIALKSW-PNLRELGLNDCLL 256 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS----SCCHHHHHHHHHHHGGGC-TTCCEEECTTCCC
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC----CCCCcHHHHHHHHHHccC-CCcCEEECCCCCC
Confidence 25667788888888775111 111233 666777777777774 223 1111134566 7778888877776
Q ss_pred CCcccccccCCCeEEEc--CCCCCcccEEEEeeCCCCCc-----eEEcC-CccccccEeEEeecC
Q 047903 325 MEDPKSRASSSRKLTCG--SDGFPNLKVLHLKSMLWLEE-----WTMGI-GAMPKLECLIINPCA 381 (430)
Q Consensus 325 ~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~~c~ 381 (430)
...... .++.. ...+++|+.|+++++ .+.. ++... ..+++|++|++++|+
T Consensus 257 ~~~~~~------~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 257 SARGAA------AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CHHHHH------HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred chhhHH------HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 432100 00000 123677777777763 3443 33222 346777777777765
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=141.39 Aligned_cols=223 Identities=16% Similarity=0.068 Sum_probs=120.5
Q ss_pred CeeEEEEeecCCCcc-----ccccc-cCcceEEEEEecCCccc-cccccc--ccccCCceeecCCCCCccc-C----hHh
Q 047903 119 NVKRINVFEKQSDFA-----HLDDY-DSHMHSLVLDLGSLVLI-HYLSGI--ENLFLLRYLKLNIPSLKSL-P----SPL 184 (430)
Q Consensus 119 ~~r~L~l~~~~~~~~-----~~~~~-~~~L~~L~L~l~~~~l~-~lp~~~--~~l~~L~~L~L~~~~i~~l-p----~~i 184 (430)
+++++.+. +..... +.... .++|+ .|++++|.+. ..|..+ +.+++|++|++++|.++.. | ..+
T Consensus 65 ~l~~l~l~-~~~~~~~~~~~~~~~~~~~~L~--~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 65 RVRRLTVG-AAQVPAQLLVGALRVLAYSRLK--ELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCEEEEC-SCCCBHHHHHHHHHHHHHSCCC--EEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred ceeEEEEe-CCcCCHHHHHHHHHhcccCcee--EEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 46667766 444321 11122 55577 7777888776 455555 7778888888888877642 2 233
Q ss_pred hhcCCCccEEecCCCCccccc-hhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhh-hcCCCCCCce
Q 047903 185 LSNLLNLYTLDMPFSYIDHTA-DEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTED-ILGRLPNLRN 262 (430)
Q Consensus 185 ~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~-~l~~l~~L~~ 262 (430)
..+++|++|++++|.+..+| ..++++++|++|++++|.+.+.. ..... .++.+++|++
T Consensus 142 -~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 142 -WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER-------------------GLMAALCPHKFPAIQN 201 (310)
T ss_dssp -TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH-------------------HHHTTSCTTSSCCCCS
T ss_pred -hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch-------------------hhhHHHhhhcCCCCCE
Confidence 56778888888888777665 34777788888888777764300 00001 0356677777
Q ss_pred EEEEccccccHHHHHHH-hcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCc-ccccccCCCeEEE
Q 047903 263 LRIWGDLSYYQSLLSQS-LCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMED-PKSRASSSRKLTC 340 (430)
Q Consensus 263 L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~-~~~~~~~~~~~~~ 340 (430)
|++++|.-......+.. +..+++|+.|+++ +|.+... | .. ..
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls----------------------------~N~l~~~~p-------~~-~~ 245 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLS----------------------------HNSLRATVN-------PS-AP 245 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECT----------------------------TSCCCCCCC-------SC-CS
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECC----------------------------CCCCCccch-------hh-HH
Confidence 77777752111222222 2444444444444 4433221 0 00 00
Q ss_pred cCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903 341 GSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 341 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 405 (430)
....+++|++|++++ +.++.++... +++|+.|++++| .++.+|. +..+++|+.|++++++
T Consensus 246 ~~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 RCMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred hccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 001124555555554 3344333222 356666666665 3555544 4566777777777665
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=1.7e-15 Score=153.37 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=80.2
Q ss_pred CeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecC
Q 047903 119 NVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP 197 (430)
Q Consensus 119 ~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~ 197 (430)
.++.|.+. ++.+..++.-. +++|+ .|+|++|.+..++. ++.+++|++|+|++|.++.+| .+ +.+++|+.|+|+
T Consensus 44 ~L~~L~l~-~n~i~~l~~l~~l~~L~--~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIAN-NSDIKSVQGIQYLPNVT--KLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SL-KDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCT-TCCCCCCTTGGGCTTCC--EEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TS-TTCTTCCEEECT
T ss_pred CCCEEECc-CCCCCCChHHccCCCCC--EEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hh-ccCCCCCEEEec
Confidence 34444444 44333332211 45555 55555555554444 455555555555555555543 33 555555555555
Q ss_pred CCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH
Q 047903 198 FSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS 277 (430)
Q Consensus 198 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 277 (430)
+|.+..+|. +..+++|+.|+|++|.+.. ++ . ++.+++|+.|++++|. .....+
T Consensus 118 ~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~-l~----------------------~-l~~l~~L~~L~Ls~N~--l~~~~~ 170 (605)
T 1m9s_A 118 HNGISDING-LVHLPQLESLYLGNNKITD-IT----------------------V-LSRLTKLDTLSLEDNQ--ISDIVP 170 (605)
T ss_dssp TSCCCCCGG-GGGCTTCSEEECCSSCCCC-CG----------------------G-GGSCTTCSEEECCSSC--CCCCGG
T ss_pred CCCCCCCcc-ccCCCccCEEECCCCccCC-ch----------------------h-hcccCCCCEEECcCCc--CCCchh
Confidence 555554432 4555555555555555544 33 3 4555555555555553 111111
Q ss_pred HHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCc
Q 047903 278 QSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMED 327 (430)
Q Consensus 278 ~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~ 327 (430)
+..+++|+.|+|++ ..+..+. .+..+ ++|+.|+|++|.+...
T Consensus 171 --l~~l~~L~~L~Ls~----N~i~~l~-~l~~l-~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSK----NHISDLR-ALAGL-KNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCS----SCCCBCG-GGTTC-TTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcC----CCCCCCh-HHccC-CCCCEEEccCCcCcCC
Confidence 44555555555553 2222221 23444 5566666665555443
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=1.3e-14 Score=129.15 Aligned_cols=143 Identities=16% Similarity=0.187 Sum_probs=105.3
Q ss_pred EEEEeecCCCccccccccCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC
Q 047903 122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY 200 (430)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~ 200 (430)
.+... +.....++..+.++|+ +|++++|.++.+ |..|..+++|++|++++|+++.+|...|+++++|++|+|++|.
T Consensus 23 ~v~c~-~~~l~~ip~~~~~~L~--~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCR-SKRHASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECT-TSCCSSCCSCCCTTCS--EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEcc-CCCcCccCCCCCCCCC--EEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 45554 5555667776778888 888888888866 4678888888888888888888877666888888888888888
Q ss_pred ccccchh-hccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 201 IDHTADE-FWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 201 l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
++.+|.. +..+++|++|++++|.+.. +| ..+++|+.|.+.++......... +..+++|+.|++.+|.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGA-FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECTTSC
T ss_pred CCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHH-HhCCCCCCEEEeeCCC
Confidence 8888765 6788888888888888886 77 45566666655554433233334 6777777888777765
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.6e-14 Score=133.43 Aligned_cols=162 Identities=21% Similarity=0.190 Sum_probs=134.9
Q ss_pred CCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD 195 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~ 195 (430)
..+++.|.+. ++.+..++.-. +++|+ .|++++|.++.++. ++.+++|++|++++|.++.+|. + +++++|++|+
T Consensus 45 l~~L~~L~l~-~~~i~~~~~~~~l~~L~--~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIAN-NSDIKSVQGIQYLPNVT--KLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECT-TSCCCCCTTGGGCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCCEEE
T ss_pred cCcccEEEcc-CCCcccChhHhcCCCCC--EEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCCEEE
Confidence 4568899998 77766564422 89999 99999999998877 8999999999999999999865 6 9999999999
Q ss_pred cCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903 196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ 273 (430)
Q Consensus 196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 273 (430)
+++|.+..++ .+..+++|++|++++|.+.. ++ ..+++|+.|.+.++.. ..... +..+++|+.|++++|. ..
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l--~~~~~-l~~l~~L~~L~L~~N~--i~ 191 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQI--SDIVP-LAGLTKLQNLYLSKNH--IS 191 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC--CCCGG-GTTCTTCCEEECCSSC--CC
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCcc--ccchh-hcCCCccCEEECCCCc--CC
Confidence 9999999886 48999999999999999998 67 7888888888877664 23344 8899999999999996 22
Q ss_pred HHHHHHhcCCCCCCEEEEec
Q 047903 274 SLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~ 293 (430)
.+ ..+..+++|+.|++++
T Consensus 192 -~l-~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 192 -DL-RALAGLKNLDVLELFS 209 (291)
T ss_dssp -BC-GGGTTCTTCSEEEEEE
T ss_pred -CC-hhhccCCCCCEEECcC
Confidence 22 2478899999999986
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=3e-15 Score=136.15 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=120.6
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
+.++. .++++++.++.++ .+..+++|++|++++|.++.+| .+ +.+++|++|++++|.++.+|. +.++++|++|+
T Consensus 18 l~~l~--~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAV--KQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHH--HHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHH--HHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 44444 5667777777666 5677888888888888888776 56 788888888888888887777 78888888888
Q ss_pred cCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC
Q 047903 219 FGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK 296 (430)
Q Consensus 219 l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 296 (430)
+++|.+.+ +| .. ++|+.|.+.++.. ..+.. ++.+++|+.|++++|. ... + ..+..+++|+.|++++
T Consensus 92 L~~N~l~~-l~~~~~-~~L~~L~L~~N~l--~~~~~-l~~l~~L~~L~Ls~N~--i~~-~-~~l~~l~~L~~L~L~~--- 159 (263)
T 1xeu_A 92 VNRNRLKN-LNGIPS-ACLSRLFLDNNEL--RDTDS-LIHLKNLEILSIRNNK--LKS-I-VMLGFLSKLEVLDLHG--- 159 (263)
T ss_dssp CCSSCCSC-CTTCCC-SSCCEEECCSSCC--SBSGG-GTTCTTCCEEECTTSC--CCB-C-GGGGGCTTCCEEECTT---
T ss_pred CCCCccCC-cCcccc-CcccEEEccCCcc--CCChh-hcCcccccEEECCCCc--CCC-C-hHHccCCCCCEEECCC---
Confidence 88888877 66 33 6677776666554 23456 8888899999988886 221 2 2577788888888875
Q ss_pred CCCceEEEEEcccccCCcceEEEEccccCCcc
Q 047903 297 MPTLSKIVLVEYQFPPRLTHLSFSNTELMEDP 328 (430)
Q Consensus 297 ~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~ 328 (430)
..++.+. .+..+ ++|+.|++++|.+...|
T Consensus 160 -N~i~~~~-~l~~l-~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 160 -NEITNTG-GLTRL-KKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -SCCCBCT-TSTTC-CCCCEEEEEEEEEECCC
T ss_pred -CcCcchH-HhccC-CCCCEEeCCCCcccCCc
Confidence 3333332 45677 88999999998875543
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=1.9e-14 Score=127.14 Aligned_cols=143 Identities=11% Similarity=0.084 Sum_probs=97.7
Q ss_pred EEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC
Q 047903 122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY 200 (430)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~ 200 (430)
.+... ++....+|..+.++++ .|++++|.++.++. .|..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus 15 ~v~c~-~~~l~~iP~~l~~~l~--~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCR-GKGLTEIPTNLPETIT--EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECT-TSCCSSCCSSCCTTCC--EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcC-CCCcCcCCCccCcCCC--EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 34444 5555556666667788 88888888887664 77888888888888888887743333888888888888888
Q ss_pred ccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 201 IDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 201 l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
++.+|.. +.++++|++|++++|.+.. ++ ..+++|+.|.+.++......... +..+++|+.|++.+|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGT-FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHH-HhCCCCCCEEEeCCCC
Confidence 8888776 5778888888888888877 43 33444444444444333233333 6666677777776664
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=126.75 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=111.7
Q ss_pred eEEEEeecCCCccccccccCcceEEEEEecCCcccccc--cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903 121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL--SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp--~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~ 198 (430)
+.+.+. ++....+|..+...++ +|++++|.++.++ ..|+.+++|++|++++|.++.+++..|+++++|++|+|++
T Consensus 14 ~~l~~s-~n~l~~iP~~~~~~~~--~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCS-NQKLNKIPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECC-SSCCSSCCSCCCTTCS--EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeC-CCCcccCccCCCCCCC--EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 366776 6666667777777788 8999999998774 3588999999999999999988775459999999999999
Q ss_pred CCccccchh-hccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 199 SYIDHTADE-FWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 199 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
|.++.+|.. +.++++|++|++++|.+....| ..+++|+.|.+.++......+.. +..+++|+.|++.+|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCcC
Confidence 999988765 8899999999999999988223 44455555555444433344555 7778888888888775
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=4e-15 Score=129.20 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=39.5
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccc-cchhhccCccccee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TADEFWKMNNLRHL 217 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L 217 (430)
+++|+ .|++++|.++.+| .+..+++|++|++++|.++.++ .+ +++++|++|++++|.++. .|..++++++|++|
T Consensus 43 l~~L~--~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLT--YITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCC--EEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCcc--EEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hh-hcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34444 4455555554444 3445555555555555444432 33 455555555555554443 33344455555555
Q ss_pred ecCCcccC
Q 047903 218 NFGSITLP 225 (430)
Q Consensus 218 ~l~~~~~~ 225 (430)
++++|.+.
T Consensus 118 ~Ls~n~i~ 125 (197)
T 4ezg_A 118 DISHSAHD 125 (197)
T ss_dssp ECCSSBCB
T ss_pred EecCCccC
Confidence 55555444
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=5.6e-15 Score=150.32 Aligned_cols=281 Identities=16% Similarity=0.130 Sum_probs=164.5
Q ss_pred CCCeeEEEEeecC-CCcc--ccccc--cCcceEEEEEecCCcccc-----cccccccccCCceeecCCCC--Cc--ccCh
Q 047903 117 RKNVKRINVFEKQ-SDFA--HLDDY--DSHMHSLVLDLGSLVLIH-----YLSGIENLFLLRYLKLNIPS--LK--SLPS 182 (430)
Q Consensus 117 ~~~~r~L~l~~~~-~~~~--~~~~~--~~~L~~L~L~l~~~~l~~-----lp~~~~~l~~L~~L~L~~~~--i~--~lp~ 182 (430)
.++++.|.+. ++ .... ++.-. +++|+ +|++++|.++. ++.....+++|++|++++|. +. .++.
T Consensus 129 ~~~L~~L~L~-~~~~~~~~~l~~~~~~~~~L~--~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 129 FKNFKVLVLS-SCEGFSTDGLAAIAATCRNLK--ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp CTTCCEEEEE-SCEEEEHHHHHHHHHHCTTCC--EEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred CCCCcEEeCC-CcCCCCHHHHHHHHHhCCCCC--EEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 3466777776 43 2221 11111 66677 77777777552 22223356678888887775 22 2222
Q ss_pred HhhhcCCCccEEecCCC-CccccchhhccCcccceeecCCccc--------------------------CC----CcC--
Q 047903 183 PLLSNLLNLYTLDMPFS-YIDHTADEFWKMNNLRHLNFGSITL--------------------------PA----HPR-- 229 (430)
Q Consensus 183 ~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~--------------------------~~----~lp-- 229 (430)
-+ .++++|++|++++| .+..+|..+.++++|++|+++++.. .. .+|
T Consensus 206 l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~ 284 (594)
T 2p1m_B 206 LV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV 284 (594)
T ss_dssp HH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG
T ss_pred HH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH
Confidence 23 56788888888887 6666777777777888877654421 00 022
Q ss_pred -ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec------------CC-
Q 047903 230 -KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS------------ES- 295 (430)
Q Consensus 230 -~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~------------~~- 295 (430)
..+++|+.|.+.++......+...+..+++|++|++.++- ....+......+++|+.|++.. ++
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 2456677776666553323333336788999999999873 3344444455688999999832 00
Q ss_pred -------CCCCceEEEE-----------Ec-ccccCCcceEEEE--c----cccCCccc--------ccccCCCeEEEcC
Q 047903 296 -------KMPTLSKIVL-----------VE-YQFPPRLTHLSFS--N----TELMEDPK--------SRASSSRKLTCGS 342 (430)
Q Consensus 296 -------~~~~L~~L~l-----------~~-~~lp~~L~~L~L~--~----~~l~~~~~--------~~~~~~~~~~~~~ 342 (430)
.+++|+.|.+ .+ ..+ ++|+.|+++ + +.+...|. ........+....
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 0778888866 11 246 899999999 3 33332211 0001111111111
Q ss_pred -----------CCCCcccEEEEeeCCCCCceEE--cCCccccccEeEEeecCCCCc-CCCCCCCCCCCCEEEEecCh
Q 047903 343 -----------DGFPNLKVLHLKSMLWLEEWTM--GIGAMPKLECLIINPCAYLKK-MPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 343 -----------~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~~ 405 (430)
..+++|+.|+++++. +..... ....+++|++|++++|+.... ++.....+++|++|++++|+
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 126677888887643 322111 113489999999999985221 22244568999999999998
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=1.1e-14 Score=128.69 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=93.7
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCcccc-chhhccCcccceeecCCccc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSITL 224 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~ 224 (430)
.++++++.++.+|..+. ++|+.|++++|.++.+|...|.++++|++|+|++|.+..+ |..+.++++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 78999999999998765 6899999999999999876559999999999999999987 66799999999999999999
Q ss_pred CCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 225 PAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 225 ~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
.. +| ..+++|+.|.+.++......+.. +..+++|+.|++++|.
T Consensus 93 ~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 93 TE-LPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred Cc-cCHhHccCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCc
Confidence 98 76 23444555544444433333444 6666666666666664
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=2.7e-15 Score=139.99 Aligned_cols=147 Identities=10% Similarity=-0.025 Sum_probs=98.4
Q ss_pred CCeeEEEEeecCCCc-ccccc---c-cCcceEEEEEecCCcccc-cc----cccccccCCceeecCCCCCcccChHhhhc
Q 047903 118 KNVKRINVFEKQSDF-AHLDD---Y-DSHMHSLVLDLGSLVLIH-YL----SGIENLFLLRYLKLNIPSLKSLPSPLLSN 187 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~-~~~~~---~-~~~L~~L~L~l~~~~l~~-lp----~~~~~l~~L~~L~L~~~~i~~lp~~i~~~ 187 (430)
.++++|.+. ++... ..+.. . +++|+ +|++++|.++. .+ ..+..+++|++|++++|.+..+|...|++
T Consensus 91 ~~L~~L~l~-~n~l~~~~~~~~~~~~~~~L~--~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 91 SRLKELTLE-DLKITGTMPPLPLEATGLALS--SLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp SCCCEEEEE-SCCCBSCCCCCSSSCCCBCCS--SCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred CceeEEEee-CCEeccchhhhhhhccCCCCC--EEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 348899998 66554 34443 2 66777 89999999874 22 34557899999999999999887555599
Q ss_pred CCCccEEecCCCCccc---cchh--hccCcccceeecCCcccCCCcC-------ccCCCCcccceeecCCCCcchhhhcC
Q 047903 188 LLNLYTLDMPFSYIDH---TADE--FWKMNNLRHLNFGSITLPAHPR-------KYCRSLENLNFISALHPCCCTEDILG 255 (430)
Q Consensus 188 L~~L~~L~L~~~~l~~---lp~~--i~~L~~L~~L~l~~~~~~~~lp-------~~l~~L~~L~~~~~~~~~~~~~~~l~ 255 (430)
+++|++|++++|++.. ++.. ++++++|++|++++|.+.. +| +.+++|+.|.+.++......+.. ++
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~ 245 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-AP 245 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HH
Confidence 9999999999997653 4333 4789999999999998875 43 23355555554444432222333 33
Q ss_pred CC---CCCceEEEEccc
Q 047903 256 RL---PNLRNLRIWGDL 269 (430)
Q Consensus 256 ~l---~~L~~L~l~~~~ 269 (430)
.+ ++|++|++++|.
T Consensus 246 ~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAG 262 (310)
T ss_dssp SCCCCTTCCCEECCSSC
T ss_pred hccCcCcCCEEECCCCC
Confidence 33 455555555553
No 102
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=2e-14 Score=146.14 Aligned_cols=280 Identities=12% Similarity=0.042 Sum_probs=173.5
Q ss_pred CCCeeEEEEeecCCCcc-ccccc---cCc-ceEEEEEecCCc-cc--ccccccccccCCceeecCCCCCcc-----cChH
Q 047903 117 RKNVKRINVFEKQSDFA-HLDDY---DSH-MHSLVLDLGSLV-LI--HYLSGIENLFLLRYLKLNIPSLKS-----LPSP 183 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~-~~~~~---~~~-L~~L~L~l~~~~-l~--~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~ 183 (430)
.++++.|.+. .+.... ....+ +++ |+ +|++++|. ++ .++.....+++|++|++++|.++. ++..
T Consensus 111 ~~~L~~L~L~-~~~i~~~~~~~l~~~~~~~L~--~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 111 LRQLKSVHFR-RMIVSDLDLDRLAKARADDLE--TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp CTTCCEEEEE-SCBCCHHHHHHHHHHHGGGCC--EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred CCCCCeEEee-ccEecHHHHHHHHHhccccCc--EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 4679999999 654432 22222 334 99 88998887 33 344445688999999999998764 3333
Q ss_pred hhhcCCCccEEecCCCCcc-----ccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCC---------
Q 047903 184 LLSNLLNLYTLDMPFSYID-----HTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHP--------- 246 (430)
Q Consensus 184 i~~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~--------- 246 (430)
. .++++|++|++++|.+. .++..+.++++|++|++++|.+.+ +| ..+++|+.|.+......
T Consensus 188 ~-~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 188 A-QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp H-HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred H-hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 4 88999999999999775 455557889999999999998887 76 66677777766432211
Q ss_pred -----------------CcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC----------CCCC
Q 047903 247 -----------------CCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES----------KMPT 299 (430)
Q Consensus 247 -----------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~ 299 (430)
...+.. +..+++|++|+++++. .....+...+..+++|+.|++.+.- .+++
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccchhHHHHH-HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 112222 5566778888888775 2233344556788888888886410 0677
Q ss_pred ceEEEEE-----------c------------ccccCCcceEEEEccccCCcccc---c-ccCCCeEEEc-----------
Q 047903 300 LSKIVLV-----------E------------YQFPPRLTHLSFSNTELMEDPKS---R-ASSSRKLTCG----------- 341 (430)
Q Consensus 300 L~~L~l~-----------~------------~~lp~~L~~L~L~~~~l~~~~~~---~-~~~~~~~~~~----------- 341 (430)
|+.|++. . ..+ ++|++|++..+.+....+. . ......+...
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC-TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhC-ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 8887764 1 124 7788888866665432210 0 0011111110
Q ss_pred ---------CCCCCcccEEEEeeCCC-CCceE--EcCCccccccEeEEeecCCCCc--CCCCCCCCCCCCEEEEecCh
Q 047903 342 ---------SDGFPNLKVLHLKSMLW-LEEWT--MGIGAMPKLECLIINPCAYLKK--MPEQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 342 ---------~~~~~~L~~L~l~~~~~-l~~~~--~~~~~~~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~ 405 (430)
...+++|+.|++++|.+ +.... .....+++|++|++.+|. +.. ++..+.++++|++|++++|+
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 11245555555544332 11100 001136778888887765 332 34445678999999999997
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=5.7e-14 Score=122.99 Aligned_cols=166 Identities=20% Similarity=0.265 Sum_probs=108.6
Q ss_pred EEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC
Q 047903 122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY 200 (430)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~ 200 (430)
.+... +.....++..+.++++ +|++++|.++.++. .++.+++|++|++++|+++.+|...|.++++|++|++++|.
T Consensus 11 ~v~c~-~~~l~~~p~~~~~~l~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECY-SQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECC-SSCCSSCCSCCCTTCS--EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEec-CCCccCCCCCCCCCCc--EEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 34444 4445556666677788 88888888887764 56788888888888888888877666888888888888888
Q ss_pred ccccchh-hccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHH
Q 047903 201 IDHTADE-FWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQS 279 (430)
Q Consensus 201 l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 279 (430)
++.+|.. ++++++|++|++++|.+.. +| ... ++.+++|+.|+++++. .....+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--------------------~~~-~~~l~~L~~L~l~~N~--l~~~~~~~ 143 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQS-LP--------------------DGV-FDKLTQLKDLRLYQNQ--LKSVPDGV 143 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC-CC--------------------TTT-TTTCTTCCEEECCSSC--CSCCCTTT
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcc-cC--------------------HhH-hccCCcCCEEECCCCc--cceeCHHH
Confidence 8877765 6788888888888888776 43 111 4445555555555553 22222223
Q ss_pred hcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccC
Q 047903 280 LCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELM 325 (430)
Q Consensus 280 l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~ 325 (430)
+..+++|+.|+++++ + +...+ ++|+.|+++.|.+.
T Consensus 144 ~~~l~~L~~L~l~~N---~-------~~~~~-~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDN---P-------WDCTC-PGIRYLSEWINKHS 178 (208)
T ss_dssp TTTCTTCCEEECCSC---C-------BCCCT-TTTHHHHHHHHHCT
T ss_pred hccCCCccEEEecCC---C-------eecCC-CCHHHHHHHHHhCC
Confidence 455556666666541 1 22344 66666666666553
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=9.9e-15 Score=127.84 Aligned_cols=178 Identities=21% Similarity=0.198 Sum_probs=135.0
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL 224 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 224 (430)
.++.+++.++.+|..+ .++|++|++++|+++.+|...|+++++|++|++++|.++.+|.. +.++++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 6788888888888765 45899999999999999877669999999999999999988875 68999999999999988
Q ss_pred CCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEE
Q 047903 225 PAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIV 304 (430)
Q Consensus 225 ~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~ 304 (430)
.. +| ... ++.+++|++|+++++. .....+..+..+++|+.|++++ ..++.+.
T Consensus 89 ~~-~~--------------------~~~-~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~----N~l~~~~ 140 (208)
T 2o6s_A 89 QS-LP--------------------NGV-FDKLTQLKELALNTNQ--LQSLPDGVFDKLTQLKDLRLYQ----NQLKSVP 140 (208)
T ss_dssp CC-CC--------------------TTT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS----SCCSCCC
T ss_pred Cc-cC--------------------HhH-hcCccCCCEEEcCCCc--CcccCHhHhccCCcCCEEECCC----CccceeC
Confidence 76 32 222 6778888888888885 3333334578899999999985 3344332
Q ss_pred E-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCcccc
Q 047903 305 L-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPK 371 (430)
Q Consensus 305 l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 371 (430)
- .+..+ ++|+.|++++|.+. ..+++|+.|.++....-..++...+.++.
T Consensus 141 ~~~~~~l-~~L~~L~l~~N~~~-----------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 141 DGVFDRL-TSLQYIWLHDNPWD-----------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTTTC-TTCCEEECCSCCBC-----------------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHhccC-CCccEEEecCCCee-----------------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 1 35567 99999999999763 35678888888764433456655555543
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=1.9e-15 Score=144.19 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=38.6
Q ss_pred cceEEEEEecCCccccc-ccccccc-----cCCceeecCCCCCcccChH-h---hhcC-CCccEEecCCCCccccchh--
Q 047903 141 HMHSLVLDLGSLVLIHY-LSGIENL-----FLLRYLKLNIPSLKSLPSP-L---LSNL-LNLYTLDMPFSYIDHTADE-- 207 (430)
Q Consensus 141 ~L~~L~L~l~~~~l~~l-p~~~~~l-----~~L~~L~L~~~~i~~lp~~-i---~~~L-~~L~~L~L~~~~l~~lp~~-- 207 (430)
+|+ +|++++|.++.. +..++.+ ++|++|++++|.++..+.. + |..+ ++|++|++++|.++..+..
T Consensus 52 ~L~--~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 52 SVT--SLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp TCC--EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred cee--EEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence 455 555555555532 2333333 5555555555555543322 1 1223 5555555555555544321
Q ss_pred ---hcc-CcccceeecCCcccC
Q 047903 208 ---FWK-MNNLRHLNFGSITLP 225 (430)
Q Consensus 208 ---i~~-L~~L~~L~l~~~~~~ 225 (430)
+.. .++|++|++++|.+.
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCceeEEEccCCcCC
Confidence 122 135555555555554
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=1e-13 Score=120.26 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=114.8
Q ss_pred CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcc-cChHhhhcCCCcc
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKS-LPSPLLSNLLNLY 192 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~~L~~L~ 192 (430)
...+++.|.+. ++.+..++ .+ +++|+ +|++++|.++.++ .++.+++|++|++++|.++. .|..+ +++++|+
T Consensus 42 ~l~~L~~L~l~-~n~i~~l~-~l~~l~~L~--~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLA-NINVTDLT-GIEYAHNIK--DLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEE-SSCCSCCT-TGGGCTTCS--EEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred hcCCccEEecc-CCCccChH-HHhcCCCCC--EEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence 34578999999 77777666 45 89999 9999999877654 78899999999999999986 57777 9999999
Q ss_pred EEecCCCCccc-cchhhccCcccceeecCCcc-cCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903 193 TLDMPFSYIDH-TADEFWKMNNLRHLNFGSIT-LPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 268 (430)
Q Consensus 193 ~L~L~~~~l~~-lp~~i~~L~~L~~L~l~~~~-~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 268 (430)
+|++++|.++. .|..++++++|++|++++|. +.. +| ..+++|+.|.+.++.... +.. +..+++|+.|++.++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~--~~~-l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHD--YRG-IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCC--CTT-GGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcC--hHH-hccCCCCCEEEeeCc
Confidence 99999998885 67779999999999999998 666 66 667777777666655422 224 677788888888777
Q ss_pred c
Q 047903 269 L 269 (430)
Q Consensus 269 ~ 269 (430)
.
T Consensus 192 ~ 192 (197)
T 4ezg_A 192 T 192 (197)
T ss_dssp -
T ss_pred c
Confidence 4
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=2.2e-14 Score=143.75 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=103.9
Q ss_pred CeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903 119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~ 198 (430)
+++.|.+. ++.+..++..++++|+ .|++++|.++.+| ..+++|++|++++|.++.+|. + .+ +|++|++++
T Consensus 60 ~L~~L~Ls-~n~L~~lp~~l~~~L~--~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l-~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLN-RLNLSSLPDNLPPQIT--VLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L-PA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECC-SSCCSCCCSCCCTTCS--EEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C-CT--TCCEEECCS
T ss_pred CccEEEeC-CCCCCccCHhHcCCCC--EEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h-hc--CCCEEECCC
Confidence 57888888 6666667777788888 8999999998888 457889999999999999887 6 65 899999999
Q ss_pred CCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 199 SYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
|.++.+|. .+++|++|++++|.+.+ +|..+++|+.|.+.++.... ++. +. ++|+.|++++|.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC
T ss_pred CcCCCCCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC
Confidence 99888887 68899999999999888 87666677777666655322 333 44 677777777774
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=125.72 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=89.4
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCccc-ChHhhhcCCCccEEecCCCCccccch-hhccCcccceeecCCcc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSIT 223 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 223 (430)
.++++++.++.+|..+.. .+++|++++|.++.+ |..+|+++++|++|++++|.++.++. .+.++++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 799999999999987643 568999999999988 44545999999999999999998876 59999999999999999
Q ss_pred cCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 224 LPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 224 ~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
+.. +| ..+++|+.|.+.++......+.. +..+++|+.|++++|.
T Consensus 93 l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 93 LEN-VQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp CCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSC
T ss_pred cCc-cCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCc
Confidence 988 55 23444444444433333333344 5555666666665553
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=1.8e-13 Score=137.15 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=62.9
Q ss_pred cceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecC
Q 047903 141 HMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFG 220 (430)
Q Consensus 141 ~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 220 (430)
+++ .|++++|.++.+|..+. ++|++|++++|.++.+| +.+++|++|++++|.++.+|. +.+ +|++|+++
T Consensus 60 ~L~--~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFS--ELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCS--EEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred Ccc--EEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 667 88888888888887663 78889999998888888 347888899999888888887 655 88888888
Q ss_pred CcccCCCcCc
Q 047903 221 SITLPAHPRK 230 (430)
Q Consensus 221 ~~~~~~~lp~ 230 (430)
+|.+.+ +|.
T Consensus 129 ~N~l~~-lp~ 137 (571)
T 3cvr_A 129 NNQLTM-LPE 137 (571)
T ss_dssp SSCCSC-CCC
T ss_pred CCcCCC-CCC
Confidence 888877 553
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=4.9e-14 Score=134.34 Aligned_cols=143 Identities=19% Similarity=0.103 Sum_probs=85.6
Q ss_pred EEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccc-cccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903 122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIE-NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS 199 (430)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~-~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~ 199 (430)
.+.+. ++....+|..+.+.++ +|++++|.++.++. .+. ++++|++|++++|+++.+++..|.++++|++|+|++|
T Consensus 22 ~l~c~-~~~l~~iP~~~~~~l~--~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCS-KQQLPNVPQSLPSYTA--LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECC-SSCCSSCCSSCCTTCS--EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeC-CCCcCccCccCCCCCC--EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 45555 5555556666666666 77777777776653 454 6777777777777777776544477777777777777
Q ss_pred Cccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhc---CCCCCCceEEEEccc
Q 047903 200 YIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDIL---GRLPNLRNLRIWGDL 269 (430)
Q Consensus 200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~ 269 (430)
.++.+|.. +.++++|++|+|++|.+.. ++ ..+++|+.|.+.++......... + ..+++|+.|++++|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVEL-IKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGG-TC----CTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHH-hcCcccCCcCCEEECCCCC
Confidence 77766653 6777777777777777766 43 33344444433333321111111 2 445666666666654
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=3.9e-14 Score=136.31 Aligned_cols=244 Identities=16% Similarity=0.090 Sum_probs=168.7
Q ss_pred CCCeeEEEEeecCCCcc-----ccccc--cCcceEEEEEecCCccc----cccccc-------ccccCCceeecCCCCCc
Q 047903 117 RKNVKRINVFEKQSDFA-----HLDDY--DSHMHSLVLDLGSLVLI----HYLSGI-------ENLFLLRYLKLNIPSLK 178 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~-----~~~~~--~~~L~~L~L~l~~~~l~----~lp~~~-------~~l~~L~~L~L~~~~i~ 178 (430)
.+.++.|.+. ++.+.. +...+ +++|+ +|++++|.+. .+|..+ ..+++|++|++++|.++
T Consensus 31 ~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~L~--~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 31 DDSVKEIVLS-GNTIGTEAARWLSENIASKKDLE--IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp CSCCCEEECT-TSEECHHHHHHHHHTTTTCTTCC--EEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred CCCccEEECC-CCCCCHHHHHHHHHHHHhCCCcc--EEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3568899988 665442 22334 78888 9999997544 344444 78899999999999988
Q ss_pred c-----cChHhhhcCCCccEEecCCCCccc-----cchhhccC---------cccceeecCCcccCC-CcC------ccC
Q 047903 179 S-----LPSPLLSNLLNLYTLDMPFSYIDH-----TADEFWKM---------NNLRHLNFGSITLPA-HPR------KYC 232 (430)
Q Consensus 179 ~-----lp~~i~~~L~~L~~L~L~~~~l~~-----lp~~i~~L---------~~L~~L~l~~~~~~~-~lp------~~l 232 (430)
. +|..+ .++++|++|+|++|.+.. ++..+..+ ++|++|++++|.+.. .+| ..+
T Consensus 108 ~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 6 67777 999999999999998863 33445555 899999999999973 244 467
Q ss_pred CCCcccceeecCCCCc----chh-hhcCCCCCCceEEEEccccccH----HHHHHHhcCCCCCCEEEEecCCCCCCceEE
Q 047903 233 RSLENLNFISALHPCC----CTE-DILGRLPNLRNLRIWGDLSYYQ----SLLSQSLCTLTCLESLKLVSESKMPTLSKI 303 (430)
Q Consensus 233 ~~L~~L~~~~~~~~~~----~~~-~~l~~l~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L 303 (430)
++|+.|.+.++..... ... . +..+++|+.|++++|. .. ..++..+..+++|+.|++++ ..+...
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~L~~L~L~~----n~i~~~ 259 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNT--FTHLGSSALAIALKSWPNLRELGLND----CLLSAR 259 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSC--CHHHHHHHHHHHGGGCTTCCEEECTT----CCCCHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcCCC--CCcHHHHHHHHHHccCCCcCEEECCC----CCCchh
Confidence 7888887777654321 233 5 7889999999999997 43 66788899999999999986 223322
Q ss_pred EE-----Ec--ccccCCcceEEEEccccCCcccccccCCCeEEEcC-CCCCcccEEEEeeCCCCCceEE----cCCcccc
Q 047903 304 VL-----VE--YQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGS-DGFPNLKVLHLKSMLWLEEWTM----GIGAMPK 371 (430)
Q Consensus 304 ~l-----~~--~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~----~~~~~~~ 371 (430)
.. ++ ..+ ++|++|+|++|.+..... ..++... ..+++|+.|+++++ .+..... ....+++
T Consensus 260 ~~~~l~~~l~~~~~-~~L~~L~L~~n~i~~~g~------~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 260 GAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAV------RTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFST 331 (386)
T ss_dssp HHHHHHHHHHTCSS-CCCCEEECCSSCCBHHHH------HHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhccC-CCeEEEECcCCcCCHHHH------HHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhh
Confidence 10 22 236 899999999998754110 0011111 34799999999984 3433221 1124677
Q ss_pred ccEeEEee
Q 047903 372 LECLIINP 379 (430)
Q Consensus 372 L~~L~l~~ 379 (430)
++.+++..
T Consensus 332 ~~~~~l~~ 339 (386)
T 2ca6_A 332 RGRGELDE 339 (386)
T ss_dssp HTCCEECC
T ss_pred cCcchhhh
Confidence 77666544
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=1.1e-13 Score=140.14 Aligned_cols=145 Identities=16% Similarity=0.098 Sum_probs=120.2
Q ss_pred CCCCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903 115 KSRKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193 (430)
Q Consensus 115 ~~~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~ 193 (430)
....+++.|.+. ++.+..++.-. +++|+ .|+|++|.+..+| .++.+++|++|+|++|.+..+| .+ ..+++|+.
T Consensus 62 ~~l~~L~~L~Ls-~N~l~~~~~l~~l~~L~--~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~ 135 (605)
T 1m9s_A 62 QYLPNVTKLFLN-GNKLTDIKPLTNLKNLG--WLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GL-VHLPQLES 135 (605)
T ss_dssp GGCTTCCEEECT-TSCCCCCGGGGGCTTCC--EEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GG-GGCTTCSE
T ss_pred ccCCCCCEEEee-CCCCCCChhhccCCCCC--EEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cc-cCCCccCE
Confidence 356789999999 77776666522 88999 9999999999876 6899999999999999999885 47 99999999
Q ss_pred EecCCCCccccchhhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 194 LDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 194 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
|+|++|.+..++ .+..+++|++|+|++|.+.+..| ..+++|+.|.+..+... .+.. +..+++|+.|++++|.
T Consensus 136 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~--~l~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 136 LYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--DLRA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSCCCCCG-GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--BCGG-GTTCTTCSEEECCSEE
T ss_pred EECCCCccCCch-hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCC--CChH-HccCCCCCEEEccCCc
Confidence 999999999884 59999999999999999998334 77777777777666542 2356 7888888888888775
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=8.7e-14 Score=126.43 Aligned_cols=140 Identities=18% Similarity=0.153 Sum_probs=76.4
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
+++|+ +|++++|.++.++ .++.+++|++|++++|.++.+|. + +++++|++|++++|.++.+|.. .. ++|++|+
T Consensus 40 l~~L~--~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l~~l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQ--NFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRLKNLNGI-PS-ACLSRLF 112 (263)
T ss_dssp HTTCS--EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCSCCTTC-CC-SSCCEEE
T ss_pred cCcCc--EEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCccCCcCcc-cc-CcccEEE
Confidence 45555 5555555555554 45555566666666665555554 4 5566666666666655555542 22 5566666
Q ss_pred cCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903 219 FGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 219 l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
+++|.+.+ +| ..+++|+.|.+.++... .+.. ++.+++|+.|++++|. .... ..+..+++|+.|++++
T Consensus 113 L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~--~~~~-l~~l~~L~~L~L~~N~--i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 113 LDNNELRD-TDSLIHLKNLEILSIRNNKLK--SIVM-LGFLSKLEVLDLHGNE--ITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCSSCCSB-SGGGTTCTTCCEEECTTSCCC--BCGG-GGGCTTCCEEECTTSC--CCBC--TTSTTCCCCCEEEEEE
T ss_pred ccCCccCC-ChhhcCcccccEEECCCCcCC--CChH-HccCCCCCEEECCCCc--Ccch--HHhccCCCCCEEeCCC
Confidence 66665555 44 44555555544444321 1234 5666666777766665 1111 4455666666666664
No 114
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.46 E-value=1.1e-14 Score=146.32 Aligned_cols=95 Identities=21% Similarity=0.249 Sum_probs=80.4
Q ss_pred chhhhHHHHhhcCChhhhHHHHh-----------hhcccCCCceechhHHHHHHHhc--CCCCC-----ChHHHHHHHHH
Q 047903 2 EKPLGLWYFKYCRLPFCLKLCFL-----------YLSVFPAHLEISTRQLYQLWIAE--GFIPD-----NSEATAEKDLE 63 (430)
Q Consensus 2 ~~i~~~l~~sY~~L~~~~k~cfl-----------~~~~fp~~~~i~~~~Li~~w~~~--g~i~~-----~~~~~~~~~~~ 63 (430)
++|++++++||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.+ ..+++++ |++
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~ 435 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLK 435 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHH
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHH
Confidence 46788999999999999999999 999999999999 8999999 99975 5788888 999
Q ss_pred HHHHCCceeeeecCCCCcEeEEEEChhHHHHHHHHhhhcCc
Q 047903 64 LLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKF 104 (430)
Q Consensus 64 ~L~~~~ll~~~~~~~~~~~~~~~mhd~~~~l~~~~~~~~~~ 104 (430)
+|+++||++....+ ....|+|||++|++|+.++.++++
T Consensus 436 ~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 436 RLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999987743 335899999999999988876543
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=2.5e-14 Score=136.30 Aligned_cols=168 Identities=20% Similarity=0.190 Sum_probs=127.5
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhh-cCCCccEEecCCCCccccch-hhccCcccceeecCCcc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLS-NLLNLYTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSIT 223 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~-~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 223 (430)
+++++++.++.+|..+. ..+++|+|++|.++.++...|. ++++|++|+|++|.+..++. .+.++++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 88999999999998765 3589999999999999887767 99999999999999999875 49999999999999999
Q ss_pred cCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHH-Hh---cCCCCCCEEEEecCC
Q 047903 224 LPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQ-SL---CTLTCLESLKLVSES 295 (430)
Q Consensus 224 ~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l---~~l~~L~~L~l~~~~ 295 (430)
+.. +| ..+++|+.|.+.++......+.. +..+++|+.|++++|. .. .++. .+ ..+++|+.|+|++
T Consensus 100 l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~--l~-~l~~~~~~~~~~l~~L~~L~L~~-- 172 (361)
T 2xot_A 100 LHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQ--IS-RFPVELIKDGNKLPKLMLLDLSS-- 172 (361)
T ss_dssp CCE-ECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC--CC-SCCGGGTC----CTTCCEEECCS--
T ss_pred CCc-CCHHHhCCCcCCCEEECCCCcccEECHHH-hCCcccCCEEECCCCc--CC-eeCHHHhcCcccCCcCCEEECCC--
Confidence 988 76 45566666666555544444556 8899999999999986 22 2222 23 5688999999984
Q ss_pred CCCCceEEEE-EcccccCC--cceEEEEccccC
Q 047903 296 KMPTLSKIVL-VEYQFPPR--LTHLSFSNTELM 325 (430)
Q Consensus 296 ~~~~L~~L~l-~~~~lp~~--L~~L~L~~~~l~ 325 (430)
..++.+.. .+..+ +. ++.|+|++|.+.
T Consensus 173 --N~l~~l~~~~~~~l-~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 --NKLKKLPLTDLQKL-PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --SCCCCCCHHHHHHS-CHHHHTTEECCSSCEE
T ss_pred --CCCCccCHHHhhhc-cHhhcceEEecCCCcc
Confidence 44554432 23445 44 478888888754
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=2.4e-13 Score=120.83 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=105.0
Q ss_pred CCCCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 116 SRKNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
.+.+++.|.+. ++.+..+. ..+ +++|+ +|++++|.++.+|. .|..+++|++|++++|+++.+|...|+.+++|
T Consensus 38 ~~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~--~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 38 IPTNAQILYLH-DNQITKLEPGVFDSLINLK--ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp CCTTCSEEECC-SSCCCCCCTTTTTTCTTCC--EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCEEEcC-CCccCccCHHHhhCccCCc--EEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 45789999999 77776654 444 88899 99999999998884 57899999999999999999988777999999
Q ss_pred cEEecCCCCccccchhhccCcccceeecCCcccCCCcC-cc---CCCCcccceeec
Q 047903 192 YTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KY---CRSLENLNFISA 243 (430)
Q Consensus 192 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~---l~~L~~L~~~~~ 243 (430)
++|++++|.++.+|..+..+++|++|++++|.+.. +| .. +++|+.|.+.++
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTS
T ss_pred CeEeccCCcccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCC
Confidence 99999999999999999999999999999999998 77 44 445555544433
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=1.7e-14 Score=146.67 Aligned_cols=273 Identities=15% Similarity=0.069 Sum_probs=160.2
Q ss_pred CCCeeEEEEeecCCCcc-ccccc---cCcceEEEEEecCC-cccc--cccccccccCCceeecCCCCCccc-----ChHh
Q 047903 117 RKNVKRINVFEKQSDFA-HLDDY---DSHMHSLVLDLGSL-VLIH--YLSGIENLFLLRYLKLNIPSLKSL-----PSPL 184 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~-~~~~~---~~~L~~L~L~l~~~-~l~~--lp~~~~~l~~L~~L~L~~~~i~~l-----p~~i 184 (430)
.+++++|.+. .+.... ....+ +++|+ .|++++| .++. ++..+.++++|++|++++|.++.. +...
T Consensus 104 ~~~L~~L~L~-~~~~~~~~~~~l~~~~~~L~--~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 104 YTWLEEIRLK-RMVVTDDCLELIAKSFKNFK--VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp CTTCCEEEEE-SCBCCHHHHHHHHHHCTTCC--EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCCCeEEee-CcEEcHHHHHHHHHhCCCCc--EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 4568888888 544331 22222 67888 8888888 4553 555556788999999998886642 2222
Q ss_pred hhcCCCccEEecCCCC--cc--ccchhhccCcccceeecCCcc-cCCCcC---ccCCCCcccceeecCC-----------
Q 047903 185 LSNLLNLYTLDMPFSY--ID--HTADEFWKMNNLRHLNFGSIT-LPAHPR---KYCRSLENLNFISALH----------- 245 (430)
Q Consensus 185 ~~~L~~L~~L~L~~~~--l~--~lp~~i~~L~~L~~L~l~~~~-~~~~lp---~~l~~L~~L~~~~~~~----------- 245 (430)
..+++|++|++++|. +. .++.-+.++++|++|++++|. +.+ +| ..+++|+.|....+..
T Consensus 181 -~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 181 -DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp -TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred -hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 467789999998885 22 233334567899999998883 322 44 5566666665322210
Q ss_pred ------------------CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC----------CC
Q 047903 246 ------------------PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES----------KM 297 (430)
Q Consensus 246 ------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~ 297 (430)
....+...+..+++|++|+++++. .....+...+..+++|+.|++.++- .+
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhC
Confidence 011122212356888999998886 2333445557788999999998621 06
Q ss_pred CCceEEEEE------------c---------ccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEe--
Q 047903 298 PTLSKIVLV------------E---------YQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLK-- 354 (430)
Q Consensus 298 ~~L~~L~l~------------~---------~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-- 354 (430)
++|+.|+++ + ..+ ++|+.|.+..+.+...... .-...+++|+.|++.
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~-~~L~~L~~~~~~l~~~~~~---------~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC-PKLESVLYFCRQMTNAALI---------TIARNRPNMTRFRLCII 407 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC-TTCCEEEEEESCCCHHHHH---------HHHHHCTTCCEEEEEES
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhc-hhHHHHHHhcCCcCHHHHH---------HHHhhCCCcceeEeecc
Confidence 778888651 0 125 7888887766665432210 000134566666665
Q ss_pred ---eCCCCCceE-------------------Ec----------CC-ccccccEeEEeecCCCCcCCCCC-CCCCCCCEEE
Q 047903 355 ---SMLWLEEWT-------------------MG----------IG-AMPKLECLIINPCAYLKKMPEQP-WCIKSLNKFN 400 (430)
Q Consensus 355 ---~~~~l~~~~-------------------~~----------~~-~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~ 400 (430)
+|+++...+ .. .+ .+++|+.|++++|......+..+ ..+++|++|+
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 233333111 00 01 26677777777765211111112 4578999999
Q ss_pred EecCh
Q 047903 401 CWWPQ 405 (430)
Q Consensus 401 l~~~~ 405 (430)
+++|+
T Consensus 488 L~~n~ 492 (594)
T 2p1m_B 488 IRDCP 492 (594)
T ss_dssp EESCS
T ss_pred CcCCC
Confidence 99988
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=9.9e-14 Score=114.57 Aligned_cols=127 Identities=21% Similarity=0.156 Sum_probs=86.9
Q ss_pred cCcceEEEEEecCCccc--ccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccc-cchhhccCcccc
Q 047903 139 DSHMHSLVLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TADEFWKMNNLR 215 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~ 215 (430)
.++++ .|++++|.++ .+|..++.+++|++|++++|.++.+ ..+ +++++|++|++++|.+.. +|..++++++|+
T Consensus 16 ~~~l~--~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVK--ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCS--EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCe--EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45666 7788888877 7777777888888888888887777 445 788888888888887776 676677788888
Q ss_pred eeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHH---HHHhcCCCCCCEEEEe
Q 047903 216 HLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLL---SQSLCTLTCLESLKLV 292 (430)
Q Consensus 216 ~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~L~~L~l~ 292 (430)
+|++++|.+.+ +| .+.. ++.+++|++|++++|. ..... ...+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~-~~-------------------~~~~-~~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKD-LS-------------------TIEP-LKKLENLKSLDLFNCE--VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCS-HH-------------------HHGG-GGGCTTCCEEECTTCG--GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCC-hH-------------------HHHH-HhhCCCCCEEeCcCCc--ccchHHHHHHHHHHCCCcccccCC
Confidence 88888887765 21 1233 6666777777777664 22211 1345566666666553
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=1.9e-13 Score=115.38 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=52.3
Q ss_pred CCeeEEEEeecCCCc--cccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcc-cChHhhhcCCCcc
Q 047903 118 KNVKRINVFEKQSDF--AHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKS-LPSPLLSNLLNLY 192 (430)
Q Consensus 118 ~~~r~L~l~~~~~~~--~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~~L~~L~ 192 (430)
.++++|.+. ++.+. .++..+ +++|+ +|++++|.++.+ ..++.+++|++|++++|.++. +|..+ +++++|+
T Consensus 24 ~~L~~L~l~-~n~l~~~~i~~~~~~l~~L~--~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLD-NCKSNDGKIEGLTAEFVNLE--FLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLT 98 (168)
T ss_dssp TSCSEEECC-SCBCBTTBCSSCCGGGGGCC--EEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCC
T ss_pred ccCCEEECC-CCCCChhhHHHHHHhCCCCC--EEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCCC
Confidence 445555555 43333 344333 45555 555555555544 445555555555555555554 33333 4555555
Q ss_pred EEecCCCCccccc--hhhccCcccceeecCCcccCC
Q 047903 193 TLDMPFSYIDHTA--DEFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 193 ~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~ 226 (430)
+|++++|.++.+| ..+..+++|++|++++|.+..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 5555555555544 345555555555555555544
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=4.5e-13 Score=115.76 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=90.1
Q ss_pred EEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCc
Q 047903 122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYI 201 (430)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 201 (430)
.+.+. ++....++..+.++++ .|++++|.++.+|..|.++++|++|++++|.++.++...|.++++|++|+|++|.+
T Consensus 14 ~l~~~-~~~l~~ip~~~~~~l~--~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCS-NKGLKVLPKGIPRDVT--ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECT-TSCCSSCCSCCCTTCC--EEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcC-CCCCCcCCCCCCCCCC--EEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 45555 5556667766677788 88888888888887888888888888888888887665558888888888888888
Q ss_pred cccch-hhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 202 DHTAD-EFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 202 ~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
+.+|. .+.++++|++|++++|.+.. +| ... +..+++|+.|++.+|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~-~~--------------------~~~-~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISV-VP--------------------EGA-FNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCB-CC--------------------TTT-TTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCe-eC--------------------hhh-hhcCccccEEEeCCCC
Confidence 87765 47788888888888888776 44 112 5556666667666664
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=8.6e-13 Score=111.24 Aligned_cols=125 Identities=22% Similarity=0.141 Sum_probs=104.8
Q ss_pred cCcceEEEEEecCCccc--ccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccc-cchhhccCcccc
Q 047903 139 DSHMHSLVLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TADEFWKMNNLR 215 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~ 215 (430)
.++++ .|++++|.++ .+|..+..+++|++|++++|.++.+ ..+ +.+++|++|++++|.+.. +|..+.++++|+
T Consensus 23 ~~~L~--~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVR--ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCS--EEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCC--EEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 67888 9999999998 8998899999999999999999988 566 999999999999999987 787788899999
Q ss_pred eeecCCcccCCCcC-----ccCCCCcccceeecCCCCcch---hhhcCCCCCCceEEEEccc
Q 047903 216 HLNFGSITLPAHPR-----KYCRSLENLNFISALHPCCCT---EDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 216 ~L~l~~~~~~~~lp-----~~l~~L~~L~~~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~ 269 (430)
+|++++|.+.. +| ..+++|+.|.+.++....... .. +..+++|+.|++.++.
T Consensus 99 ~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV-FKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH-HTTCSSCCEETTEETT
T ss_pred EEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH-HHhCccCcEecCCCCC
Confidence 99999999988 65 556666666665554322222 35 8899999999999886
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=8.9e-13 Score=112.11 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=99.1
Q ss_pred CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~ 193 (430)
...+++.|.+. ++.+..++.-. .++|+ +|++++|.++.+ ..++.+++|++|++++|.++.+|+.+|+++++|++
T Consensus 17 ~~~~L~~L~l~-~n~l~~i~~~~~~~~~L~--~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLR-GYKIPVIENLGATLDQFD--AIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECT-TSCCCSCCCGGGGTTCCS--EEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEee-CCCCchhHHhhhcCCCCC--EEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 45678888888 66666554322 34888 888899888877 67888889999999999988888776688899999
Q ss_pred EecCCCCccccch--hhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 194 LDMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 194 L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
|++++|.+..+|. .++.+++|++|++++|.+.. +|. ..... ++.+++|+.|++..+.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~-----------------~~~~~-~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKH-----------------YRLYV-IYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STT-----------------HHHHH-HHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHh-----------------HHHHH-HHHCCccceeCCCcCC
Confidence 9999998888886 68888889999888888765 331 01112 5566777777777775
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=6.4e-13 Score=109.65 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=92.3
Q ss_pred CCCeeEEEEeecCCCc--cccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcc-cChHhhhcCCCc
Q 047903 117 RKNVKRINVFEKQSDF--AHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKS-LPSPLLSNLLNL 191 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~--~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~~L~~L 191 (430)
+.++++|.+. ++... .++..+ +++|+ +|++++|.++.+ ..++.+++|++|++++|.++. +|..+ +++++|
T Consensus 16 ~~~l~~L~l~-~n~l~~~~~~~~~~~l~~L~--~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLD-NSRSNEGKLEGLTDEFEELE--FLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNL 90 (149)
T ss_dssp GGGCSEEECT-TCBCBTTBCCSCCTTCTTCC--EEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTC
T ss_pred CccCeEEEcc-CCcCChhHHHHHHhhcCCCc--EEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCC
Confidence 4678999999 66665 566665 88999 999999999987 788999999999999999998 66655 899999
Q ss_pred cEEecCCCCccccc--hhhccCcccceeecCCcccCC
Q 047903 192 YTLDMPFSYIDHTA--DEFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 192 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~ 226 (430)
++|++++|.++.+| ..++.+++|++|++++|.+.+
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 99999999999876 679999999999999999887
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=2e-12 Score=111.68 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=101.2
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch-hhccCcccceeecCCccc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSITL 224 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 224 (430)
+++++++.++.+|..+. .+|++|++++|.++.+|..+ .++++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 78999999999997664 58999999999999999777 999999999999999998875 489999999999999998
Q ss_pred CCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903 225 PAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 225 ~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
.. +| +.. +..+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 91 ~~-i~--------------------~~~-f~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 91 RC-IP--------------------PRT-FDGLKSLRLLSLHGND--ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CB-CC--------------------TTT-TTTCTTCCEEECCSSC--CCBCCTTTTTTCTTCCEEECCS
T ss_pred CE-eC--------------------HHH-hCCCCCCCEEECCCCC--CCeeChhhhhcCccccEEEeCC
Confidence 87 32 233 7788899999999886 3333334577899999999986
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=1.2e-12 Score=113.02 Aligned_cols=123 Identities=16% Similarity=0.137 Sum_probs=68.4
Q ss_pred EEEEeecCCCccccccccCcceEEEEEecCCccccccc--ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903 122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS--GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS 199 (430)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~--~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~ 199 (430)
.+.+. ++....++..+..+++ +|++++|.++.++. .++.+++|++|++++|+++.+++..|+++++|++|+|++|
T Consensus 12 ~l~~s-~~~l~~ip~~~~~~l~--~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCT-GRGLKEIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECT-TSCCSSCCSCCCTTCS--EEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcC-CCCcCcCccCCCCCCC--EEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 44444 4444445554444555 56666666655543 2556666666666666666553222266666666666666
Q ss_pred Cccccchh-hccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 200 YIDHTADE-FWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
.++.++.. +.++++|++|++++|.+.+ ..+.. ++.+++|+.|++.+|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------~~~~~-~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISC---------------------VMPGS-FEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCE---------------------ECTTS-STTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCe---------------------eCHHH-hhcCCCCCEEEeCCCC
Confidence 66555433 5556666666666665554 22333 5666667777776664
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=4.2e-12 Score=108.01 Aligned_cols=103 Identities=20% Similarity=0.203 Sum_probs=73.1
Q ss_pred eEEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903 121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS 199 (430)
Q Consensus 121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~ 199 (430)
+.+.+. ++....++..+.++++ .|++++|.++.+|. .++.+++|++|++++|.++.+|...|+++++|++|++++|
T Consensus 10 ~~l~~~-~~~l~~~p~~~~~~l~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCN-SKGLTSVPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECC-SSCCSSCCTTCCTTCS--EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEec-CCCCccCCCCCCCCCc--EEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 345555 5555556655566777 77778777776664 4577778888888888777777665577888888888888
Q ss_pred Cccccchh-hccCcccceeecCCcccCC
Q 047903 200 YIDHTADE-FWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 226 (430)
.++.+|.. +.++++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceE
Confidence 77777664 5777788888887777765
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=2e-12 Score=111.59 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=95.3
Q ss_pred CCCeeEEEEeecCCCcccccc--c--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 117 RKNVKRINVFEKQSDFAHLDD--Y--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~--~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
+..++.|.+. ++.+..++.. + +++|+ +|++++|.++.+ |..|+++++|++|++++|+++.++...|+++++|
T Consensus 28 ~~~l~~L~l~-~n~i~~~~~~~~~~~l~~L~--~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 28 PLHTTELLLN-DNELGRISSDGLFGRLPHLV--KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL 104 (192)
T ss_dssp CTTCSEEECC-SCCCCSBCCSCSGGGCTTCC--EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC
T ss_pred CCCCCEEECC-CCcCCccCCccccccCCCCC--EEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 4589999999 7777766653 4 88888 999999999976 6789999999999999999999877655999999
Q ss_pred cEEecCCCCcccc-chhhccCcccceeecCCcccCCCcC
Q 047903 192 YTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSITLPAHPR 229 (430)
Q Consensus 192 ~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp 229 (430)
++|++++|.++.+ |..+..+++|++|++++|.+....+
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999999999976 6669999999999999999987433
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=1.6e-12 Score=134.75 Aligned_cols=148 Identities=16% Similarity=0.123 Sum_probs=74.2
Q ss_pred CCCeeEEEEeecCCCccccccc--cCcceEE---EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSL---VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL 191 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L---~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L 191 (430)
..+++++++. .+.....+... ...|+.+ .++++.|.+...+..+..+..|+.|+|++|.+..+|..+ .++++|
T Consensus 172 ~~~~~~l~L~-~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELF-ANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GGCCSC
T ss_pred CCccceEEee-CCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCC
Confidence 3456777776 44443333332 2223221 334444444544566777777777777777777777777 577777
Q ss_pred cEEecCCCCccccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903 192 YTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 268 (430)
Q Consensus 192 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 268 (430)
++|+|++|.++.+|..++++++|++|+|++|.+.. +| +.+++|+.|.+.++... ..+.. ++.+++|+.|++++|
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCC-CCCSS-TTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCC-ccChh-hhcCCCccEEeCCCC
Confidence 77777777777777777777777777777777775 77 45555555555554432 34555 778888888888877
Q ss_pred c
Q 047903 269 L 269 (430)
Q Consensus 269 ~ 269 (430)
.
T Consensus 327 ~ 327 (727)
T 4b8c_D 327 P 327 (727)
T ss_dssp C
T ss_pred c
Confidence 6
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=1.9e-12 Score=130.24 Aligned_cols=100 Identities=20% Similarity=0.174 Sum_probs=65.2
Q ss_pred CCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeec
Q 047903 166 LLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISA 243 (430)
Q Consensus 166 ~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~ 243 (430)
.|++|++++|.++.+|. + +++++|++|+|++|.++.+|..++++++|++|++++|.+.+ +| +.+++|+.|.+.++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-G-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-c-cccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCC
Confidence 46666666666666665 5 66666777777666666666666666677777776666666 66 45555555555544
Q ss_pred CCCCcc-hhhhcCCCCCCceEEEEccc
Q 047903 244 LHPCCC-TEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 244 ~~~~~~-~~~~l~~l~~L~~L~l~~~~ 269 (430)
...... +.. ++.+++|+.|++++|.
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSG
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCc
Confidence 433333 556 7788888888888775
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=3.9e-12 Score=107.84 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=86.2
Q ss_pred eEEEEeecCCCccccccccCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903 121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS 199 (430)
Q Consensus 121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~ 199 (430)
+.+.+. ++....+|..+.++|+ +|++++|.++.+ |..|+++++|++|+|++|+++.+|..+|+++++|++|+|++|
T Consensus 15 ~~l~~~-~n~l~~iP~~~~~~L~--~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQ-NIRLASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECC-SSCCSSCCSCCCTTCS--EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeC-CCCCCccCCCcCCCCc--EEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 456666 6666677777788888 889999998877 467888999999999999999888877688999999999999
Q ss_pred Cccccchh-hccCcccceeecCCcccCC
Q 047903 200 YIDHTADE-FWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 226 (430)
.++.+|.. +.++++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88888876 8889999999999998876
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=4.6e-12 Score=106.98 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=84.3
Q ss_pred eEEEEeecCCCccccccccCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903 121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS 199 (430)
Q Consensus 121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~ 199 (430)
+.+.+. ++....++..+.++++ +|++++|.++.+ |..|+++++|++|++++|+++.+|+..|.++++|++|+|++|
T Consensus 12 ~~l~~s-~n~l~~ip~~~~~~l~--~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCS-GKSLASVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECT-TSCCSSCCSCCCTTCS--EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeC-CCCcCccCccCCCCCc--EEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666 6666667777778888 888899988877 467888889999999999888888777688899999999998
Q ss_pred Cccccchh-hccCcccceeecCCcccCC
Q 047903 200 YIDHTADE-FWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 226 (430)
.++.+|.. +.++++|++|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88888775 7888899999998888775
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=1.1e-13 Score=120.07 Aligned_cols=124 Identities=19% Similarity=0.139 Sum_probs=76.0
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
+++|+ +|++++|.++.+| .++.+++|++|++++|.++.+|..+ ..+++|++|++++|.++.+| .++++++|++|+
T Consensus 47 l~~L~--~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACK--HLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCS--EEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred CCCCC--EEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 55666 6666666666655 5566666666666666666666554 55666666666666666655 356666666666
Q ss_pred cCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH----------HHhcCCCCCCE
Q 047903 219 FGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS----------QSLCTLTCLES 288 (430)
Q Consensus 219 l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~l~~l~~L~~ 288 (430)
+++|.+.. + ..+.. +..+++|+.|++.+|. .....+ ..+..+++|+.
T Consensus 122 l~~N~i~~-~-------------------~~~~~-l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 122 MSNNKITN-W-------------------GEIDK-LAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp ESEEECCC-H-------------------HHHHH-HTTTTTCSEEEECSCH--HHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred CCCCcCCc-h-------------------hHHHH-HhcCCCCCEEEecCCc--cccccccccchHHHHHHHHHhCCCcEE
Confidence 66666554 1 12245 7888889999998885 322221 23556666666
Q ss_pred EE
Q 047903 289 LK 290 (430)
Q Consensus 289 L~ 290 (430)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=9.3e-12 Score=105.81 Aligned_cols=120 Identities=21% Similarity=0.210 Sum_probs=95.8
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL 224 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 224 (430)
.++++++.++.+|..+. ++|++|++++|+++.+|...|+++++|++|++++|.++.+|.. ++++++|++|++++|.+
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 78899999999986554 6899999999999999877669999999999999999999876 68999999999999999
Q ss_pred CCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 225 PAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 225 ~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
.. +| ..+++|+.|.+.++......... +..+++|+.|++.+|.
T Consensus 89 ~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 89 QS-LPNGVFDKLTQLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CC-CCTTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred cc-cCHHHhhCCcccCEEECcCCcceEeCHHH-hcCCcccCEEEecCCC
Confidence 98 66 34556666655555433222333 5777888888888775
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=4e-12 Score=108.06 Aligned_cols=126 Identities=14% Similarity=0.112 Sum_probs=101.0
Q ss_pred cCcceEEEEEecCCccccccccccccc-CCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhh-ccCcccce
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLF-LLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEF-WKMNNLRH 216 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~ 216 (430)
+.+|+ .|++++|.++.+|. +..+. +|++|++++|.++.+ ..+ +++++|++|++++|.++.+|..+ +.+++|++
T Consensus 18 ~~~L~--~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDR--ELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCE--EEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCC-CCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCce--EEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-ccc-ccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 67788 99999999998865 55555 999999999999988 456 99999999999999999988664 89999999
Q ss_pred eecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHH----HhcCCCCCCEEEEe
Q 047903 217 LNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQ----SLCTLTCLESLKLV 292 (430)
Q Consensus 217 L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~l~~l~~L~~L~l~ 292 (430)
|++++|.+.. +| .... ++.+++|+.|++++|. . ...+. .+..+++|+.|+++
T Consensus 93 L~L~~N~i~~-~~-------------------~~~~-l~~l~~L~~L~l~~N~--i-~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 93 LILTNNSLVE-LG-------------------DLDP-LASLKSLTYLCILRNP--V-TNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp EECCSCCCCC-GG-------------------GGGG-GGGCTTCCEEECCSSG--G-GGSTTHHHHHHHHCTTCSEETTE
T ss_pred EECCCCcCCc-ch-------------------hhHh-hhcCCCCCEEEecCCC--C-CCcHhHHHHHHHHCCccceeCCC
Confidence 9999998865 32 1234 7788899999999986 2 22232 47788999999987
Q ss_pred c
Q 047903 293 S 293 (430)
Q Consensus 293 ~ 293 (430)
.
T Consensus 149 ~ 149 (176)
T 1a9n_A 149 K 149 (176)
T ss_dssp E
T ss_pred c
Confidence 6
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=6.1e-12 Score=126.54 Aligned_cols=119 Identities=22% Similarity=0.244 Sum_probs=70.8
Q ss_pred cceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecC
Q 047903 141 HMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFG 220 (430)
Q Consensus 141 ~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 220 (430)
.|+ +|++++|.++.+|. ++.+++|++|++++|.++.+|..+ +++++|++|+|++|.++.+| .++++++|++|+++
T Consensus 442 ~L~--~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVR--VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCS--EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred Cce--EEEecCCCCCCCcC-ccccccCcEeecCcccccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 455 66667776666665 666667777777777766666666 67777777777777666666 56667777777777
Q ss_pred CcccCCCc-C---ccCCCCcccceeecCCCCc--chhhhcCCCCCCceEE
Q 047903 221 SITLPAHP-R---KYCRSLENLNFISALHPCC--CTEDILGRLPNLRNLR 264 (430)
Q Consensus 221 ~~~~~~~l-p---~~l~~L~~L~~~~~~~~~~--~~~~~l~~l~~L~~L~ 264 (430)
+|.+.+.. | +.+++|+.|.+.++..... .....+..+++|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 77666622 5 4455555554444332111 1111133466777664
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=6.7e-12 Score=130.13 Aligned_cols=102 Identities=25% Similarity=0.254 Sum_probs=68.4
Q ss_pred cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 218 (430)
+..|+ +|+|++|.+..+|..+.++++|++|+|++|.++.+|..+ ++|++|++|+|++|.++.+|..+++|++|++|+
T Consensus 223 l~~L~--~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 223 DQLWH--ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCC--EEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred CCCCc--EEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 55666 777777777777766667777777777777777777666 777777777777777777777777777777777
Q ss_pred cCCcccCCCcC---ccCCCCcccceeecC
Q 047903 219 FGSITLPAHPR---KYCRSLENLNFISAL 244 (430)
Q Consensus 219 l~~~~~~~~lp---~~l~~L~~L~~~~~~ 244 (430)
|++|.+.. +| +.+++|+.|.+.++.
T Consensus 300 L~~N~l~~-lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 300 FFDNMVTT-LPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCSSCCCC-CCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCCCc-cChhhhcCCCccEEeCCCCc
Confidence 77777665 66 344444444444433
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=4.7e-11 Score=100.73 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=83.2
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL 224 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 224 (430)
+++++++.++.+|..+. ++|++|++++|.++.+++..|+++++|++|+|++|+++.+|.. +.++++|++|++++|.+
T Consensus 13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 89999999999998764 7899999999999999655459999999999999999999876 68999999999999999
Q ss_pred CCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 225 PAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 225 ~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
.. +| ... +..+++|+.|++.+|.
T Consensus 91 ~~-~~--------------------~~~-~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 91 KS-IP--------------------RGA-FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CC-CC--------------------TTT-TTTCTTCCEEECCSSC
T ss_pred CE-eC--------------------HHH-hcCCCCCCEEEeCCCC
Confidence 87 44 112 5566666777776664
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=5.4e-11 Score=100.76 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=72.8
Q ss_pred EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL 224 (430)
Q Consensus 146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 224 (430)
.++++++.++.+|..+. ++|++|++++|.++.+++..|+++++|++|+|++|+++.+|.. +.++++|++|++++|.+
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 88999999999998775 8999999999999999655559999999999999999999886 58999999999999999
Q ss_pred CCCcC
Q 047903 225 PAHPR 229 (430)
Q Consensus 225 ~~~lp 229 (430)
.. +|
T Consensus 94 ~~-l~ 97 (174)
T 2r9u_A 94 KS-IP 97 (174)
T ss_dssp CC-CC
T ss_pred ce-eC
Confidence 87 54
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=7.2e-13 Score=114.98 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=93.1
Q ss_pred CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903 116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193 (430)
Q Consensus 116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~ 193 (430)
....++.|.+. ++.+..++ .+ +++|+ .|++++|.++.+|..+..+++|++|++++|+++.+| .+ +++++|++
T Consensus 46 ~l~~L~~L~ls-~n~l~~l~-~~~~l~~L~--~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~l~~L~~ 119 (198)
T 1ds9_A 46 TLKACKHLALS-TNNIEKIS-SLSGMENLR--ILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRV 119 (198)
T ss_dssp HTTTCSEEECS-EEEESCCC-CHHHHTTCC--EEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HHHHHSSE
T ss_pred cCCCCCEEECC-CCCCcccc-ccccCCCCC--EEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-ccCCCCCE
Confidence 35679999998 66666666 55 89999 999999999999988888999999999999999987 57 99999999
Q ss_pred EecCCCCccccch--hhccCcccceeecCCcccCC
Q 047903 194 LDMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 194 L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~ 226 (430)
|++++|.++.+|. .+..+++|++|++++|.+.+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 9999999998875 68999999999999998866
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=2e-10 Score=107.80 Aligned_cols=213 Identities=13% Similarity=-0.010 Sum_probs=110.0
Q ss_pred ccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc----CCCcC----ccCCC
Q 047903 164 LFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL----PAHPR----KYCRS 234 (430)
Q Consensus 164 l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~----~~~lp----~~l~~ 234 (430)
+++|+.+++.. .++.+++..|.+|++|+.+++++|.+..++.. |..+.++..+.+..+.. .. +. ..+.+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~-i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR-WEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT-TTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc-ccccccccccc
Confidence 56666666655 55555555556666666666666555555443 44444454444333211 00 11 11111
Q ss_pred CcccceeecCCCCcchhhh---cCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-Ecccc
Q 047903 235 LENLNFISALHPCCCTEDI---LGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQF 310 (430)
Q Consensus 235 L~~L~~~~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~l 310 (430)
|+. .............+ -....++..+.+.+.- ...........+++|+.++++. .+++.+.- .|.++
T Consensus 178 L~~--~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~----n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 178 LET--TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISK----TNATTIPDFTFAQK 249 (329)
T ss_dssp CEE--EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTT----BCCCEECTTTTTTC
T ss_pred cce--eEEecCCCcHHHHHhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCC----CCcceecHhhhhCC
Confidence 110 00111101111110 1123455566665543 2222222223467888888863 34665543 45567
Q ss_pred cCCcceEEEEccccCCcccccccCCCeEEEcCCCCCccc-EEEEeeCCCCCceEEc-CCccccccEeEEeecCCCCcCCC
Q 047903 311 PPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLK-VLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMPE 388 (430)
Q Consensus 311 p~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~ 388 (430)
++|+.+++.++ +...+ .....++++|+ .+.+.+ +++.+... ...+++|+.+++.++ .++.++.
T Consensus 250 -~~L~~l~l~~n-i~~I~----------~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~ 314 (329)
T 3sb4_A 250 -KYLLKIKLPHN-LKTIG----------QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGD 314 (329)
T ss_dssp -TTCCEEECCTT-CCEEC----------TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECT
T ss_pred -CCCCEEECCcc-cceeh----------HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccch
Confidence 88999988876 32211 00124566787 888875 55555322 235788999998764 5777764
Q ss_pred -CCCCCCCCCEEEE
Q 047903 389 -QPWCIKSLNKFNC 401 (430)
Q Consensus 389 -~l~~l~~L~~L~l 401 (430)
.+.++++|+.++.
T Consensus 315 ~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCCCEEEC
T ss_pred hhhcCCcchhhhcc
Confidence 6788999998864
No 141
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.05 E-value=1.6e-10 Score=127.40 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=79.7
Q ss_pred hhhhHHHHhhcCChhhhHHHHhhhcccCCCceechhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCCcE
Q 047903 3 KPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTI 82 (430)
Q Consensus 3 ~i~~~l~~sY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~ 82 (430)
.+..++++||+.|++++|+||+|||+||+++.|+++.++++|.+++ +.++.++++|+++||++... ++..
T Consensus 363 ~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-------~~~~~~l~~L~~~sl~~~~~---~~~~ 432 (1249)
T 3sfz_A 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET-------EEVEDILQEFVNKSLLFCNR---NGKS 432 (1249)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-------HHHHHHHHHHHHTTSCEEEE---SSSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-------HHHHHHHHHHHhccceEEec---CCCc
Confidence 5889999999999999999999999999999999999999997664 55899999999999999765 3344
Q ss_pred eEEEEChhHHHHHHHHhhhc
Q 047903 83 NTCSVHGRCRPVLLSVAFEA 102 (430)
Q Consensus 83 ~~~~mhd~~~~l~~~~~~~~ 102 (430)
..|+|||++|++++..+.++
T Consensus 433 ~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 433 FCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEECCHHHHHHHHHHTGGG
T ss_pred eEEEecHHHHHHHHhhhhHH
Confidence 67999999999999886654
No 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.02 E-value=1.7e-10 Score=119.74 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=73.7
Q ss_pred chhhhHHHHhhcCChhhh-HHHHhhhcccCCCceechhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCC
Q 047903 2 EKPLGLWYFKYCRLPFCL-KLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGG 80 (430)
Q Consensus 2 ~~i~~~l~~sY~~L~~~~-k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~ 80 (430)
+.|..+|++||+.||++. |+||+|||+||+++.|.++.++.+|+++| ++.+..++++|+++||++...
T Consensus 353 ~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~----- 421 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP----- 421 (1221)
T ss_dssp HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----
Confidence 368899999999999999 99999999999999999999999999998 235889999999999999732
Q ss_pred cEeEEEEChhHHHHHH
Q 047903 81 TINTCSVHGRCRPVLL 96 (430)
Q Consensus 81 ~~~~~~mhd~~~~l~~ 96 (430)
....|+|||++++++.
T Consensus 422 ~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 422 KESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSEEBCCCHHHHHHH
T ss_pred CCCEEEehHHHHHHhc
Confidence 1257999999998653
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.92 E-value=1.6e-09 Score=102.35 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=64.2
Q ss_pred CCccccccc--cCcceEEEEEecC-Ccccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccc
Q 047903 130 SDFAHLDDY--DSHMHSLVLDLGS-LVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTA 205 (430)
Q Consensus 130 ~~~~~~~~~--~~~L~~L~L~l~~-~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp 205 (430)
....+|. + +.+|+ .|+|++ |.++.+| ..|+++++|++|+|++|+++.+|+..|++|++|++|+|++|.+..+|
T Consensus 20 ~l~~ip~-l~~~~~L~--~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLT--ELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCS--EEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCccCC-CCCCCCee--EEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 4555666 5 55666 777775 7777666 46777777777777777777776555577777777777777777777
Q ss_pred hhhccCcccceeecCCcccCC
Q 047903 206 DEFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 206 ~~i~~L~~L~~L~l~~~~~~~ 226 (430)
..+.....|++|++.+|.+..
T Consensus 97 ~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp STTTCSCCCCEEECCSSCCCC
T ss_pred HHHcccCCceEEEeeCCCccC
Confidence 654333337777777777664
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=2.3e-09 Score=101.20 Aligned_cols=97 Identities=21% Similarity=0.090 Sum_probs=81.7
Q ss_pred EEEecCC-cccccccccccccCCceeecCC-CCCcccChHhhhcCCCccEEecCCCCccccch-hhccCcccceeecCCc
Q 047903 146 VLDLGSL-VLIHYLSGIENLFLLRYLKLNI-PSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSI 222 (430)
Q Consensus 146 ~L~l~~~-~l~~lp~~~~~l~~L~~L~L~~-~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~ 222 (430)
.++.+++ .++.+|. +..+++|++|+|++ |.++.+|+..|++|++|++|+|++|.++.+|. .|+++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688888 8999999 99999999999996 99999987655999999999999999998865 5899999999999999
Q ss_pred ccCCCcC-ccCCC--CcccceeecC
Q 047903 223 TLPAHPR-KYCRS--LENLNFISAL 244 (430)
Q Consensus 223 ~~~~~lp-~~l~~--L~~L~~~~~~ 244 (430)
.+.. +| ..+.. |+.|.+.++.
T Consensus 91 ~l~~-~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALES-LSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSC-CCSTTTCSCCCCEEECCSSC
T ss_pred ccce-eCHHHcccCCceEEEeeCCC
Confidence 9998 87 33333 6666555444
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=7.9e-08 Score=92.35 Aligned_cols=238 Identities=8% Similarity=0.034 Sum_probs=131.7
Q ss_pred cceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeec
Q 047903 141 HMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNF 219 (430)
Q Consensus 141 ~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 219 (430)
+|+ .+.+..+ ++.++ .+|.+ .+|+.+.+.. .++.++...|.+|.+|+.+++..|+++.+|.......+|+.+.+
T Consensus 136 ~L~--~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIA--KVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCS--EEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred Ccc--EEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 555 5566544 55555 35555 3577777775 57777666668888888888877777777776444577777777
Q ss_pred CCcccCCCcC-ccCCCCcccceeecCCCCc-chhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC-
Q 047903 220 GSITLPAHPR-KYCRSLENLNFISALHPCC-CTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK- 296 (430)
Q Consensus 220 ~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~- 296 (430)
..+ +.. ++ ..+.++..|.....+.... ....+|.+ .+|+.+.+... ....-..+|.++++|+.+.+..+..
T Consensus 211 p~~-l~~-I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 211 PVT-LKE-IGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CTT-CCE-ECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred CCc-hhe-ehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEEeCCcccc
Confidence 643 443 55 3343333333333332111 11122545 66777777443 2222234566777777777754110
Q ss_pred CCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccE
Q 047903 297 MPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLEC 374 (430)
Q Consensus 297 ~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~ 374 (430)
...+..+.- .|.++ ++|+.+++.++ +...+ . ....++++|+.+.+.. ++..+... ...+ +|+.
T Consensus 285 ~~~~~~I~~~aF~~c-~~L~~l~l~~~-i~~I~------~----~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGC-PKLARFEIPES-IRILG------Q----GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCTTCEECTTTTTTC-TTCCEECCCTT-CCEEC------T----TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCE
T ss_pred CCcccEECHHHhhCC-ccCCeEEeCCc-eEEEh------h----hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCE
Confidence 001112211 34455 67777777632 22110 0 0123457788888853 45555322 1235 8999
Q ss_pred eEEeecCCCCcCC-CCCCCCC-CCCEEEEecCh
Q 047903 375 LIINPCAYLKKMP-EQPWCIK-SLNKFNCWWPQ 405 (430)
Q Consensus 375 L~l~~c~~l~~lp-~~l~~l~-~L~~L~l~~~~ 405 (430)
+.+.++. +..++ ..+.+++ +++.|++-...
T Consensus 350 l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 350 VKVEGTT-PPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EEECCSS-CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEEcCCC-CcccccccccCCCCCccEEEeCHHH
Confidence 9998864 44444 4455664 78889887655
No 146
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.73 E-value=1.4e-08 Score=103.04 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=74.9
Q ss_pred hhhhHHHHhhcCChhhhHHHHhhhcccCCCceechhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCCcE
Q 047903 3 KPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTI 82 (430)
Q Consensus 3 ~i~~~l~~sY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~ 82 (430)
.|..++..||+.||++.|.||++||+||+|+.|+.+.+...|.+++ +.+..++++|+++||++.... +..
T Consensus 363 ~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-------~~~~~~l~~L~~~~Ll~~~~~---~~~ 432 (591)
T 1z6t_A 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET-------EEVEDILQEFVNKSLLFCDRN---GKS 432 (591)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH-------HHHHHHHHHHHHTTSSEEEEE---TTE
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCH-------HHHHHHHHHHHhCcCeEEecC---CCc
Confidence 5788999999999999999999999999999999999999996543 347889999999999986552 334
Q ss_pred eEEEEChhHHHHHHHH
Q 047903 83 NTCSVHGRCRPVLLSV 98 (430)
Q Consensus 83 ~~~~mhd~~~~l~~~~ 98 (430)
..|+||+++++++...
T Consensus 433 ~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 433 FRYYLHDLQVDFLTEK 448 (591)
T ss_dssp EEEECCHHHHHHHHHH
T ss_pred cEEEEcHHHHHHHHhh
Confidence 6899999999998877
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=1.4e-07 Score=90.67 Aligned_cols=239 Identities=8% Similarity=0.078 Sum_probs=153.5
Q ss_pred CCCCCCCCCCeeEEEEeecCCCcccccc-c-cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhh
Q 047903 110 GDPKGKSRKNVKRINVFEKQSDFAHLDD-Y-DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLS 186 (430)
Q Consensus 110 ~~~~~~~~~~~r~L~l~~~~~~~~~~~~-~-~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 186 (430)
+...+.. .+++.+.+. ++ +..+.+. + -.+|+ .+.+.. .++.++ ..|.++.+|+.++++.|+++.+|...|.
T Consensus 128 ~~~aF~~-~~L~~i~l~-~~-i~~I~~~aF~~~~L~--~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~ 201 (401)
T 4fdw_A 128 PKDAFRN-SQIAKVVLN-EG-LKSIGDMAFFNSTVQ--EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201 (401)
T ss_dssp CTTTTTT-CCCSEEECC-TT-CCEECTTTTTTCCCC--EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT
T ss_pred hHhhccc-CCccEEEeC-CC-ccEECHHhcCCCCce--EEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe
Confidence 3334443 357788876 54 3334443 3 45677 777775 677676 6899999999999999999999988877
Q ss_pred cCCCccEEecCCCCccccchh-hccCcccceeecCCcccCCCcC-ccC--CCCcccceeecCCCCcchhhhcCCCCCCce
Q 047903 187 NLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR-KYC--RSLENLNFISALHPCCCTEDILGRLPNLRN 262 (430)
Q Consensus 187 ~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~l--~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~ 262 (430)
..+|+.+.+.. .++.++.. |.++++|+.+++..+ +.. ++ ..+ .+|+.+.+- .+-....... |.++++|+.
T Consensus 202 -~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~-I~~~aF~~~~L~~i~lp-~~i~~I~~~a-F~~c~~L~~ 275 (401)
T 4fdw_A 202 -YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VST-IGQEAFRESGITTVKLP-NGVTNIASRA-FYYCPELAE 275 (401)
T ss_dssp -TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCE-ECTTTTTTCCCSEEEEE-TTCCEECTTT-TTTCTTCCE
T ss_pred -ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccC-ccccccccCCccEEEeC-CCccEEChhH-hhCCCCCCE
Confidence 68999999985 47788765 889999999999875 333 55 333 445555441 1111122334 889999999
Q ss_pred EEEEccccc---cHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeE
Q 047903 263 LRIWGDLSY---YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKL 338 (430)
Q Consensus 263 L~l~~~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~ 338 (430)
+.+.++... ........|.++++|+.+.+. .+++.+.- .|.++ ++|+.+.|..+ +...+ ..
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-----~~i~~I~~~aF~~c-~~L~~l~lp~~-l~~I~------~~-- 340 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-----ESIRILGQGLLGGN-RKVTQLTIPAN-VTQIN------FS-- 340 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-----TTCCEECTTTTTTC-CSCCEEEECTT-CCEEC------TT--
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeC-----CceEEEhhhhhcCC-CCccEEEECcc-ccEEc------HH--
Confidence 999876411 001233567888999999884 45666543 45566 88999988554 22110 00
Q ss_pred EEcCCCCCcccEEEEeeCCCCCceEEc-CCcc-ccccEeEEee
Q 047903 339 TCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAM-PKLECLIINP 379 (430)
Q Consensus 339 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L~~L~l~~ 379 (430)
....+ +|+.+.+.+ +....+... ...+ .+++.|++-.
T Consensus 341 --aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 341 --AFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp --SSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred --hCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCH
Confidence 12345 788888887 333333211 1223 2566777654
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=3.1e-08 Score=92.69 Aligned_cols=167 Identities=10% Similarity=-0.000 Sum_probs=92.5
Q ss_pred cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCc----------------
Q 047903 139 DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYI---------------- 201 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l---------------- 201 (430)
+++|+ .+++.+ .++.++ ..|.++++|+.++++.|.+..+++..|.++.++..+.+.....
T Consensus 100 ~~~L~--~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLE--KVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCC--C-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCc--EEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 35555 666666 666565 3566777777777777766666666556666666665544100
Q ss_pred -----------cccchh---------------------------h-ccCcccceeecCCcccCCCcC-ccCCCCccccee
Q 047903 202 -----------DHTADE---------------------------F-WKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFI 241 (430)
Q Consensus 202 -----------~~lp~~---------------------------i-~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~ 241 (430)
..+|.. + ..+++|+.+++++|.+.. +| ..+.++..|...
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEE
Confidence 001110 0 126778888888777776 77 444444444444
Q ss_pred ecCCCC-cchhhhcCCCCCCc-eEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceE
Q 047903 242 SALHPC-CCTEDILGRLPNLR-NLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHL 317 (430)
Q Consensus 242 ~~~~~~-~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L 317 (430)
..+... .....+|.++++|+ .+.+... ....-..+|.++++|+.+++. +.+++.+.- .|.++ ++|+.+
T Consensus 256 ~l~~ni~~I~~~aF~~~~~L~~~l~l~~~---l~~I~~~aF~~c~~L~~l~l~----~n~i~~I~~~aF~~~-~~L~~l 326 (329)
T 3sb4_A 256 KLPHNLKTIGQRVFSNCGRLAGTLELPAS---VTAIEFGAFMGCDNLRYVLAT----GDKITTLGDELFGNG-VPSKLI 326 (329)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEEEECTT---CCEECTTTTTTCTTEEEEEEC----SSCCCEECTTTTCTT-CCCCEE
T ss_pred ECCcccceehHHHhhCChhccEEEEEccc---ceEEchhhhhCCccCCEEEeC----CCccCccchhhhcCC-cchhhh
Confidence 443211 12222377778887 8877663 222333567777888888875 344554432 33444 555554
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=1.3e-08 Score=96.92 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=17.9
Q ss_pred CCCccEEecCCCCccc-----cchhhccCcccceeecCCcccC
Q 047903 188 LLNLYTLDMPFSYIDH-----TADEFWKMNNLRHLNFGSITLP 225 (430)
Q Consensus 188 L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~ 225 (430)
.++|++|+|++|.++. ++..+...++|++|+|++|.+.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 3445555555554432 2333344455555555555443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=4.9e-09 Score=99.78 Aligned_cols=163 Identities=17% Similarity=0.123 Sum_probs=87.5
Q ss_pred cCcceEEEEEecCCcccccc-ccccc-----ccCCceeecCCCCCccc-ChHhhhcCCCccEEecCCCCccccch-----
Q 047903 139 DSHMHSLVLDLGSLVLIHYL-SGIEN-----LFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPFSYIDHTAD----- 206 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp-~~~~~-----l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp~----- 206 (430)
.++++ .|++++|.++... ..+.. ..+|++|+|++|.++.. ...++..+++|+.|+|++|.++....
T Consensus 71 ~~~L~--~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLR--QLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCC--EEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCC--EEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 45666 7777777766322 22222 25777888888777632 22332456677788888777654321
Q ss_pred hh-ccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccc--cHHHHHHHhcCC
Q 047903 207 EF-WKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSY--YQSLLSQSLCTL 283 (430)
Q Consensus 207 ~i-~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~l 283 (430)
.+ ...++|++|++++|.+.. .. ....... +...++|++|++++|.-. ....+...+...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~-~~----------------~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTA-AG----------------VAVLMEG-LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHH-HH----------------HHHHHHH-HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred HHHhcCCccceeeCCCCCCCh-HH----------------HHHHHHH-HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 12 235677777777776654 00 0011122 456667777777777511 112334555566
Q ss_pred CCCCEEEEecCCCCCCceEEEE-----EcccccCCcceEEEEccccCC
Q 047903 284 TCLESLKLVSESKMPTLSKIVL-----VEYQFPPRLTHLSFSNTELME 326 (430)
Q Consensus 284 ~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~ 326 (430)
++|+.|+|++ ..+..... .+... ++|++|+|++|.+..
T Consensus 211 ~~L~~L~Ls~----N~i~~~g~~~l~~~L~~~-~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 211 RQLQELNVAY----NGAGDTAALALARAAREH-PSLELLHLYFNELSS 253 (372)
T ss_dssp SCCCEEECCS----SCCCHHHHHHHHHHHHHC-SSCCEEECTTSSCCH
T ss_pred CCcCeEECCC----CCCCHHHHHHHHHHHHhC-CCCCEEeccCCCCCH
Confidence 6666666664 11211100 11233 567777777776543
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.27 E-value=1.4e-05 Score=76.56 Aligned_cols=270 Identities=13% Similarity=0.097 Sum_probs=131.9
Q ss_pred cCCCCCCCCCCeeEEEEeecCCCcccccc-c--cCcceEEEEEecCCcccccc-cccccccCCceeecCCC---------
Q 047903 109 FGDPKGKSRKNVKRINVFEKQSDFAHLDD-Y--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIP--------- 175 (430)
Q Consensus 109 ~~~~~~~~~~~~r~L~l~~~~~~~~~~~~-~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~--------- 175 (430)
++...+..-.+++.+.+. +. +..+.+. + +.+|+ .+++..+ ++.++ ..|.++..|+.+.+..+
T Consensus 62 Ig~~AF~~c~~L~~i~lp-~~-i~~I~~~aF~~c~~L~--~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIP-ST-VREIGEFAFENCSKLE--IINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp ECTTTTTTCTTEEEEECC-TT-CCEECTTTTTTCTTCC--EECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred hHHHHhhCCCCceEEEeC-CC-ccCcchhHhhCCCCCc--EEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 566666666678888776 44 3334333 3 67777 6666543 55554 45666666666555432
Q ss_pred ------------CCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCcccCCCcC-ccCCCCccccee
Q 047903 176 ------------SLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFI 241 (430)
Q Consensus 176 ------------~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~ 241 (430)
.+..+....|.++.+|+.+.+..+ +..++.. +.++.+|+.+++..+ +.. ++ ..+.+...|...
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~-I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI-IRDYCFAECILLENM 213 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE-ECTTTTTTCTTCCBC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE-eCchhhcccccccee
Confidence 112223334466667777766543 3344433 566666776666544 222 33 222222222222
Q ss_pred ecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC---------CCCCceEEEE-------
Q 047903 242 SALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES---------KMPTLSKIVL------- 305 (430)
Q Consensus 242 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l------- 305 (430)
..........+......+|+.+.+.... ...-...+.....|+.+.+..+. .+..++.+..
T Consensus 214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~~---~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~ 290 (394)
T 4fs7_A 214 EFPNSLYYLGDFALSKTGVKNIIIPDSF---TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE 290 (394)
T ss_dssp CCCTTCCEECTTTTTTCCCCEEEECTTC---CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT
T ss_pred ecCCCceEeehhhcccCCCceEEECCCc---eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc
Confidence 2221111111112233556666554331 11111234455666666664310 0333333332
Q ss_pred -EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCC
Q 047903 306 -VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYL 383 (430)
Q Consensus 306 -~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l 383 (430)
.+... .+|+.+.+.++ +...+ . .....+++|+.+.+.. +++.+... -..+++|+.+.+.. .+
T Consensus 291 ~~F~~~-~~L~~i~l~~~-i~~I~-------~---~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l 354 (394)
T 4fs7_A 291 KTFYGC-SSLTEVKLLDS-VKFIG-------E---EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SL 354 (394)
T ss_dssp TTTTTC-TTCCEEEECTT-CCEEC-------T---TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TC
T ss_pred cccccc-ccccccccccc-cceec-------h---hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cc
Confidence 12233 55666655433 11000 0 0123456777777753 34444221 12467788888764 36
Q ss_pred CcCC-CCCCCCCCCCEEEEecCh
Q 047903 384 KKMP-EQPWCIKSLNKFNCWWPQ 405 (430)
Q Consensus 384 ~~lp-~~l~~l~~L~~L~l~~~~ 405 (430)
+.++ ..+.++++|+.+++...-
T Consensus 355 ~~I~~~aF~~C~~L~~i~lp~~~ 377 (394)
T 4fs7_A 355 RKIGANAFQGCINLKKVELPKRL 377 (394)
T ss_dssp CEECTTTBTTCTTCCEEEEEGGG
T ss_pred cEehHHHhhCCCCCCEEEECCCC
Confidence 6665 367888999999987543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=6.3e-07 Score=84.61 Aligned_cols=131 Identities=18% Similarity=0.131 Sum_probs=61.0
Q ss_pred hcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCC-cC----ccCCCCcccceeecC---CCC---cchhhhc
Q 047903 186 SNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAH-PR----KYCRSLENLNFISAL---HPC---CCTEDIL 254 (430)
Q Consensus 186 ~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-lp----~~l~~L~~L~~~~~~---~~~---~~~~~~l 254 (430)
..+++|+.|.+++|.-..+|. + .+++|++|++..|.+... +. ..+++|+.|.+.... ... ..+...+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 555566666665552112333 2 255566665555544321 00 245555555443211 000 0111112
Q ss_pred --CCCCCCceEEEEccccccHHHHHHHh---cCCCCCCEEEEecCCCCCCceEEEE-----EcccccCCcceEEEEcccc
Q 047903 255 --GRLPNLRNLRIWGDLSYYQSLLSQSL---CTLTCLESLKLVSESKMPTLSKIVL-----VEYQFPPRLTHLSFSNTEL 324 (430)
Q Consensus 255 --~~l~~L~~L~l~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l 324 (430)
..+++|+.|++.+|. ........+ ..+++|+.|+|+. +.+..-.. .+..+ ++|+.|++++|.+
T Consensus 247 ~~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~----n~L~d~G~~~L~~~L~~l-~~L~~L~L~~n~i 319 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISA----GVLTDEGARLLLDHVDKI-KHLKFINMKYNYL 319 (362)
T ss_dssp CTTTCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCS----SCCBHHHHHHHHTTHHHH-TTCSEEECCSBBC
T ss_pred hcCCCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCC----CCCChHHHHHHHhhcccC-CcceEEECCCCcC
Confidence 357889999998876 333222222 2456677777753 22222100 11234 6667777766654
Q ss_pred C
Q 047903 325 M 325 (430)
Q Consensus 325 ~ 325 (430)
.
T Consensus 320 ~ 320 (362)
T 2ra8_A 320 S 320 (362)
T ss_dssp C
T ss_pred C
Confidence 3
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=1.5e-06 Score=77.93 Aligned_cols=65 Identities=23% Similarity=0.170 Sum_probs=47.6
Q ss_pred ccccCCceeecCCCCCcccC---hHhhhcCCCccEEecCCCCccccchhhccCc--ccceeecCCcccCCCc
Q 047903 162 ENLFLLRYLKLNIPSLKSLP---SPLLSNLLNLYTLDMPFSYIDHTADEFWKMN--NLRHLNFGSITLPAHP 228 (430)
Q Consensus 162 ~~l~~L~~L~L~~~~i~~lp---~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~l 228 (430)
.++++|+.|+|++|.++.++ ..+ +.+++|+.|+|++|.+..+.. +..+. +|++|++++|.+.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCcccc
Confidence 45778888888888877653 444 788888888888888777633 44444 8888888888876533
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=7.9e-06 Score=68.10 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=13.4
Q ss_pred EEEecCCccccc-ccccccccCCceeecCCC
Q 047903 146 VLDLGSLVLIHY-LSGIENLFLLRYLKLNIP 175 (430)
Q Consensus 146 ~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~ 175 (430)
.||+++|.++.. ...+.++++|+.|+|++|
T Consensus 65 ~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 65 AIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp EEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred EEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 555555554411 133344444445554444
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=4.2e-06 Score=71.12 Aligned_cols=110 Identities=12% Similarity=0.105 Sum_probs=63.2
Q ss_pred cCcceEEEEEecCC-ccc-----ccccccccccCCceeecCCCCCcc-----cChHhhhcCCCccEEecCCCCccc----
Q 047903 139 DSHMHSLVLDLGSL-VLI-----HYLSGIENLFLLRYLKLNIPSLKS-----LPSPLLSNLLNLYTLDMPFSYIDH---- 203 (430)
Q Consensus 139 ~~~L~~L~L~l~~~-~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l~~---- 203 (430)
.+.|+ .|++++| .+. .+...+...++|++|+|++|.+.. +...+ ...++|++|+|++|.+..
T Consensus 35 ~~~L~--~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLE--EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp CTTCC--EEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCHHHHH
T ss_pred CCCCC--EEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcCCHHHHH
Confidence 45556 6677776 554 233445556677777777777652 33334 556677777777776653
Q ss_pred -cchhhccCcccceeec--CCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 204 -TADEFWKMNNLRHLNF--GSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 204 -lp~~i~~L~~L~~L~l--~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
+...+...++|++|++ ++|.+... ....+..++...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~------------------g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNN------------------VEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHH------------------HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHH------------------HHHHHHHHHHhCCCcCEEeccCCC
Confidence 3444566666777777 55665430 000111114555677777777765
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.94 E-value=4.4e-06 Score=71.01 Aligned_cols=117 Identities=17% Similarity=0.023 Sum_probs=77.4
Q ss_pred ccccccccCCceeecCCC-CCcc-----cChHhhhcCCCccEEecCCCCccc-----cchhhccCcccceeecCCcccCC
Q 047903 158 LSGIENLFLLRYLKLNIP-SLKS-----LPSPLLSNLLNLYTLDMPFSYIDH-----TADEFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 158 p~~~~~l~~L~~L~L~~~-~i~~-----lp~~i~~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~ 226 (430)
...+...+.|++|+|++| .+.. +...+ ...++|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 345667788999999998 7762 44555 778889999999997763 44556677889999998888765
Q ss_pred CcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEE--Ecccc--ccHHHHHHHhcCCCCCCEEEEec
Q 047903 227 HPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRI--WGDLS--YYQSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 227 ~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l--~~~~~--~~~~~~~~~l~~l~~L~~L~l~~ 293 (430)
. ........ +...++|++|++ .++.- .....+...+...++|+.|++++
T Consensus 108 ~-----------------g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 108 S-----------------GILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp H-----------------HHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred H-----------------HHHHHHHH-HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 0 00012223 666778899999 66651 12223445555566677777654
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.90 E-value=4.7e-06 Score=78.62 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=105.2
Q ss_pred CCCeeEEEEeecCCCc---------cccccc--cCcceEEEEEecCCccc----------ccccccccccCCceeecCCC
Q 047903 117 RKNVKRINVFEKQSDF---------AHLDDY--DSHMHSLVLDLGSLVLI----------HYLSGIENLFLLRYLKLNIP 175 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~---------~~~~~~--~~~L~~L~L~l~~~~l~----------~lp~~~~~l~~L~~L~L~~~ 175 (430)
+.+++.|.+. .+... .+.+++ +++|+ .|.+.+.... .+...+..+++|+.|+++++
T Consensus 106 ~~~v~~L~lg-~~~~~~~~~~~~~~~L~~s~~~l~~L~--~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 106 LPSLKQITIG-XWGYEGEDCSDIADGIVENKEKFAHFE--GLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp GGGCSEEEEC-CCCSSSCCSHHHHHHHHTTHHHHTTCS--EEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred chhcceEEEc-ccccCCCcHHHHHHHHHHhhhhcchhh--heeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 4457788777 43321 012223 68899 5555443221 24455677899999999987
Q ss_pred CCcccChHhhhcCCCccEEecCCCCcccc-chhhc--cCcccceeecCC--cccCCC--c-------C-ccCCCCcccce
Q 047903 176 SLKSLPSPLLSNLLNLYTLDMPFSYIDHT-ADEFW--KMNNLRHLNFGS--ITLPAH--P-------R-KYCRSLENLNF 240 (430)
Q Consensus 176 ~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~--~L~~L~~L~l~~--~~~~~~--l-------p-~~l~~L~~L~~ 240 (430)
.-..+|. + . +++|++|++..|.+..- ...+. .+++|++|+|+. +...+. + . ..+++|+.|.+
T Consensus 183 ~~l~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 183 NNLSIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp BTCBCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred CCceecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 4234554 4 4 89999999998876532 12233 789999999863 221111 1 1 45788999988
Q ss_pred eecCCCCcchhhh--cCCCCCCceEEEEcccccc--HHHHHHHhcCCCCCCEEEEec
Q 047903 241 ISALHPCCCTEDI--LGRLPNLRNLRIWGDLSYY--QSLLSQSLCTLTCLESLKLVS 293 (430)
Q Consensus 241 ~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~--~~~~~~~l~~l~~L~~L~l~~ 293 (430)
.++.......... ...+++|++|+++.|.-.. ...++..+..+++|+.|+++.
T Consensus 260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 7766432222220 3468899999998886111 123344445678999999975
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=1.8e-05 Score=65.86 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=64.2
Q ss_pred ccccccccccCCceeecCCCCCccc-ChHhhhcCCCccEEecCCC-Cccccc-hhhccC----cccceeecCCcc-cCCC
Q 047903 156 HYLSGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPFS-YIDHTA-DEFWKM----NNLRHLNFGSIT-LPAH 227 (430)
Q Consensus 156 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~-~l~~lp-~~i~~L----~~L~~L~l~~~~-~~~~ 227 (430)
.+|.....-.+|+.|++++|.|+.. -..+ .++++|++|+|++| .++.-- ..+..+ ++|++|++++|. ++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD- 129 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD- 129 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-
Confidence 3454333335789999999988743 2446 88999999999998 676422 225543 468888888875 544
Q ss_pred cCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903 228 PRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 269 (430)
Q Consensus 228 lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 269 (430)
..+.. +..+++|++|++++|.
T Consensus 130 --------------------~Gl~~-L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 --------------------KGIIA-LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp --------------------HHHHH-GGGCTTCCEEEEESCT
T ss_pred --------------------HHHHH-HhcCCCCCEEECCCCC
Confidence 56666 7788999999999986
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=2.1e-05 Score=70.52 Aligned_cols=76 Identities=20% Similarity=0.075 Sum_probs=61.5
Q ss_pred cCcceEEEEEecCCcccccc---cccccccCCceeecCCCCCcccChHhhhcCC--CccEEecCCCCcc-ccc-------
Q 047903 139 DSHMHSLVLDLGSLVLIHYL---SGIENLFLLRYLKLNIPSLKSLPSPLLSNLL--NLYTLDMPFSYID-HTA------- 205 (430)
Q Consensus 139 ~~~L~~L~L~l~~~~l~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~--~L~~L~L~~~~l~-~lp------- 205 (430)
+++|+ .|+|++|.++.++ ..++.+++|++|+|++|.++.+ .++ ..+. +|++|+|++|.+. .+|
T Consensus 169 l~~L~--~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 169 IPELL--SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp CTTCC--EEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred CCCCC--EEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCccccCcchhHHH
Confidence 67888 9999999988554 5667899999999999999987 345 5555 9999999999876 344
Q ss_pred hhhccCcccceee
Q 047903 206 DEFWKMNNLRHLN 218 (430)
Q Consensus 206 ~~i~~L~~L~~L~ 218 (430)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2367889999884
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.75 E-value=9.4e-05 Score=70.73 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=34.3
Q ss_pred CCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCCCcCC-CCCCCCCCCCEEEEec
Q 047903 344 GFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMP-EQPWCIKSLNKFNCWW 403 (430)
Q Consensus 344 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 403 (430)
.+.+|+.+.+.+ +++.+... ...+++|+.+.+.+ .++.++ ..+.++++|+.+.+..
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc
Confidence 345677777653 34444221 12457788888753 466665 4577888899887743
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.44 E-value=0.0041 Score=59.18 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=70.6
Q ss_pred cCCCCCCCC-CCeeEEEEeecCCCccccccc--cCcceEEEEEecCCc---ccccc-cccccccCCceeecCCCCCcccC
Q 047903 109 FGDPKGKSR-KNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLV---LIHYL-SGIENLFLLRYLKLNIPSLKSLP 181 (430)
Q Consensus 109 ~~~~~~~~~-~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~---l~~lp-~~~~~l~~L~~L~L~~~~i~~lp 181 (430)
++...+..- ..++.+.+. +.....-..++ +.+|+ .+.+..+. ++.+. .+|..+.+|+.+.+..+ ++.++
T Consensus 54 Ig~~aF~~~~~~L~sI~iP-~svt~Ig~~AF~~C~~L~--~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIP-DTVTEIGSNAFYNCTSLK--RVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp ECTTTTTTCCSCCCEEEEC-TTCCEECTTTTTTCTTCC--EEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred cCHhhccCCCCcCEEEEEC-CCeeEEhHHHhhCCccCc--eEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 566666543 357888887 54333223334 77888 66666543 55665 46778888888877654 67777
Q ss_pred hHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCc
Q 047903 182 SPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSI 222 (430)
Q Consensus 182 ~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~ 222 (430)
...|.++.+|+.+.+..+ +..++.. +..+.+|+.+.+..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhcccccccccce-eeeecccceecccccccccccce
Confidence 766788888888888643 4445443 667777777766543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.00065 Score=53.71 Aligned_cols=54 Identities=24% Similarity=0.183 Sum_probs=43.2
Q ss_pred EEEecCCccc--ccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCc
Q 047903 146 VLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYI 201 (430)
Q Consensus 146 ~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 201 (430)
+++.+++.++ .+|..+. .+|++|+|++|+|+.+|..+|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 6777888887 8886543 3688899999999999888778899999999988854
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.68 E-value=0.0017 Score=51.24 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=47.6
Q ss_pred ceeecCCCCCc--ccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCcccCC
Q 047903 168 RYLKLNIPSLK--SLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 168 ~~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~ 226 (430)
..++-++++++ .+|..+ -.+|++|+|++|.|+.+|.+ +..+++|++|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888898 999655 45799999999999999876 7889999999999997653
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.25 E-value=0.014 Score=55.38 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=72.9
Q ss_pred cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCcccCCCcC-ccCCCCc
Q 047903 159 SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR-KYCRSLE 236 (430)
Q Consensus 159 ~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~ 236 (430)
..|.++..|+.+.+..+ +..++...|.++.+|+.+.+. +.++.++.. |.++.+|+.+++..+ +.. +. ..+.+..
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCT
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCC
Confidence 45677777888877654 445666666888888888875 356667654 777788888877643 333 44 3333333
Q ss_pred ccceeecCCCC--cchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEe
Q 047903 237 NLNFISALHPC--CCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLV 292 (430)
Q Consensus 237 ~L~~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 292 (430)
.|.....+.+. ..... |.++++|+.+.+.++. .....+....+|+.+.+.
T Consensus 335 ~L~~i~ip~sv~~I~~~a-F~~C~~L~~i~~~~~~-----~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 335 QLERIAIPSSVTKIPESA-FSNCTALNNIEYSGSR-----SQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEEECTTCCBCCGGG-GTTCTTCCEEEESSCH-----HHHHTCBCCCCC------
T ss_pred CCCEEEECcccCEEhHhH-hhCCCCCCEEEECCce-----eehhhhhccCCCCEEEeC
Confidence 33333333221 22334 8899999999987763 122456777888888875
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.70 E-value=0.047 Score=51.36 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=25.2
Q ss_pred cccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeec
Q 047903 161 IENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNF 219 (430)
Q Consensus 161 ~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 219 (430)
|.++..|+.+.+.. .++.++...|.++.+|+.+.+.++.++.++.. |.++.+|+.+.+
T Consensus 259 F~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 259 LQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 33444444444432 24444444444444444444444444444332 444444444443
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.59 E-value=0.046 Score=51.42 Aligned_cols=100 Identities=10% Similarity=0.085 Sum_probs=71.6
Q ss_pred CCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903 117 RKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY 192 (430)
Q Consensus 117 ~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~ 192 (430)
...++.+.+. +.. ..+.+.. +..|+ .+.+.. .+..++ ..|.++.+|+.+.+.++.++.+++..|.++.+|+
T Consensus 239 ~~~L~~i~lp-~~v-~~I~~~aF~~~~~l~--~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 239 MKALDEIAIP-KNV-TSIGSFLLQNCTALK--TLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp CSSCCEEEEC-TTC-CEECTTTTTTCTTCC--EEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred CccceEEEcC-CCc-cEeCccccceeehhc--cccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 3445566665 332 2232222 55666 555543 355565 4788999999999999999999888889999999
Q ss_pred EEecCCCCccccchh-hccCcccceeecCCc
Q 047903 193 TLDMPFSYIDHTADE-FWKMNNLRHLNFGSI 222 (430)
Q Consensus 193 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~ 222 (430)
.+.+.. +++.++.. |.++.+|+.+.+..+
T Consensus 314 ~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 314 SVTLPT-ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred EEEcCc-cccEEHHHHhhCCCCCCEEEECCc
Confidence 999975 47777654 889999999977543
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.50 E-value=0.013 Score=49.59 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=20.7
Q ss_pred hcCCCccEEecCCCCcc-----ccchhhccCcccceeecCCcccCC
Q 047903 186 SNLLNLYTLDMPFSYID-----HTADEFWKMNNLRHLNFGSITLPA 226 (430)
Q Consensus 186 ~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~ 226 (430)
..-..|+.|+|++|.+. .+.+.+..-+.|++|+|++|.+..
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 44455555555555443 223334444556666665555543
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.77 E-value=0.07 Score=45.03 Aligned_cols=81 Identities=7% Similarity=0.126 Sum_probs=54.6
Q ss_pred cCcceEEEEEecCC-ccc-----ccccccccccCCceeecCCCCCcc-----cChHhhhcCCCccEEecCCCCccc----
Q 047903 139 DSHMHSLVLDLGSL-VLI-----HYLSGIENLFLLRYLKLNIPSLKS-----LPSPLLSNLLNLYTLDMPFSYIDH---- 203 (430)
Q Consensus 139 ~~~L~~L~L~l~~~-~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l~~---- 203 (430)
-+.|+ .|+|+++ .+. .+-..+..-+.|+.|+|++|++.. +-..+ ..-..|++|+|++|.|..
T Consensus 40 n~~L~--~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 40 DTDLK--EVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp CSSCC--EEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCCHHHHH
T ss_pred CCCcc--EEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcCCHHHHH
Confidence 34555 7777775 554 234556666788999999988772 33444 667889999999987763
Q ss_pred -cchhhccCcccceeecCCc
Q 047903 204 -TADEFWKMNNLRHLNFGSI 222 (430)
Q Consensus 204 -lp~~i~~L~~L~~L~l~~~ 222 (430)
+-+.+..-+.|++|+|+++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 3344555566888887754
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.65 E-value=12 Score=27.28 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=20.5
Q ss_pred ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903 160 GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF 198 (430)
Q Consensus 160 ~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~ 198 (430)
.|.++..|+.+.+..+ ++.+....|.+|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4555556665555543 4555444445555555555544
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.93 E-value=16 Score=26.65 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=36.9
Q ss_pred CCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCc
Q 047903 174 IPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSI 222 (430)
Q Consensus 174 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~ 222 (430)
+..++.+....|.++.+|+.+.+..+ ++.+... |.++.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 45677887778899999999999764 5666543 888999999966543
No 171
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=28.23 E-value=18 Score=21.06 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=7.7
Q ss_pred cccCCCcee
Q 047903 27 SVFPAHLEI 35 (430)
Q Consensus 27 ~~fp~~~~i 35 (430)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 789999986
Done!