Query 047904
Match_columns 448
No_of_seqs 203 out of 1831
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 2.9E-72 6.2E-77 592.7 39.4 371 32-447 1-461 (539)
2 PLN00044 multi-copper oxidase- 100.0 6.5E-72 1.4E-76 586.9 38.7 361 30-447 23-476 (596)
3 PLN02354 copper ion binding / 100.0 1.2E-69 2.5E-74 569.7 39.4 356 31-447 24-461 (552)
4 PLN02792 oxidoreductase 100.0 1.1E-69 2.4E-74 567.4 37.7 350 30-447 12-446 (536)
5 PLN02991 oxidoreductase 100.0 1.5E-69 3.2E-74 565.9 38.1 344 30-447 24-453 (543)
6 KOG1263 Multicopper oxidases [ 100.0 2.2E-68 4.8E-73 554.4 37.2 375 20-447 14-476 (563)
7 PLN02168 copper ion binding / 100.0 3.5E-68 7.6E-73 556.5 38.3 349 30-447 22-458 (545)
8 PLN02835 oxidoreductase 100.0 5.5E-67 1.2E-71 548.8 38.6 347 30-447 25-454 (539)
9 PLN02191 L-ascorbate oxidase 100.0 8.8E-66 1.9E-70 543.9 39.2 389 29-447 18-488 (574)
10 PLN02604 oxidoreductase 100.0 3.1E-64 6.8E-69 532.9 39.7 397 17-447 7-488 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 2.9E-63 6.2E-68 524.0 37.0 382 34-447 1-465 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2E-63 4.2E-68 524.0 35.4 361 36-447 10-463 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.4E-50 3E-55 426.7 32.4 214 35-260 46-320 (587)
14 PRK10965 multicopper oxidase; 100.0 1E-43 2.3E-48 371.7 27.0 203 34-261 45-285 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.2E-42 2.7E-47 360.5 28.1 199 37-262 48-283 (471)
16 COG2132 SufI Putative multicop 100.0 8.9E-34 1.9E-38 294.8 25.2 188 46-262 57-261 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 7.8E-35 1.7E-39 287.2 15.1 186 30-260 23-264 (311)
18 PF00394 Cu-oxidase: Multicopp 99.9 1.7E-23 3.8E-28 187.5 9.6 111 118-260 6-120 (159)
19 PF07732 Cu-oxidase_3: Multico 99.9 2E-23 4.3E-28 177.0 6.6 67 46-112 19-101 (117)
20 TIGR03095 rusti_cyanin rusticy 99.3 1.9E-12 4.1E-17 114.0 5.8 66 46-113 46-136 (148)
21 TIGR03096 nitroso_cyanin nitro 99.1 2.2E-10 4.7E-15 98.0 8.4 91 14-113 4-123 (135)
22 PF07731 Cu-oxidase_2: Multico 98.8 2.8E-09 6.1E-14 92.9 4.9 48 396-446 29-76 (138)
23 TIGR01480 copper_res_A copper- 98.6 5.3E-08 1.1E-12 104.0 6.4 76 33-111 471-573 (587)
24 TIGR02376 Cu_nitrite_red nitri 98.1 5.8E-05 1.3E-09 75.0 14.2 79 180-276 46-125 (311)
25 PF07731 Cu-oxidase_2: Multico 97.9 3.3E-05 7.1E-10 67.1 8.0 73 200-273 34-118 (138)
26 PRK10965 multicopper oxidase; 97.6 0.0001 2.2E-09 78.2 6.7 72 184-260 414-488 (523)
27 PLN02835 oxidoreductase 97.6 0.00083 1.8E-08 71.6 12.8 84 180-276 47-131 (539)
28 TIGR03389 laccase laccase, pla 97.5 0.00094 2E-08 71.5 11.8 84 182-277 23-107 (539)
29 PLN02354 copper ion binding / 97.3 0.0024 5.3E-08 68.3 12.7 84 180-276 45-129 (552)
30 TIGR03388 ascorbase L-ascorbat 97.3 0.0036 7.8E-08 67.0 13.1 83 182-276 21-104 (541)
31 PLN02168 copper ion binding / 97.2 0.0027 5.9E-08 67.7 11.7 83 181-276 45-128 (545)
32 PLN02991 oxidoreductase 97.2 0.0025 5.5E-08 67.9 10.9 85 180-277 46-131 (543)
33 PLN02792 oxidoreductase 97.1 0.0034 7.4E-08 66.9 11.4 82 181-277 35-119 (536)
34 PLN02604 oxidoreductase 97.1 0.0087 1.9E-07 64.4 13.9 84 181-276 43-127 (566)
35 TIGR03390 ascorbOXfungal L-asc 97.1 0.0043 9.3E-08 66.4 11.4 85 182-277 28-114 (538)
36 PLN02191 L-ascorbate oxidase 96.9 0.011 2.5E-07 63.6 12.9 85 180-276 41-126 (574)
37 PRK02710 plastocyanin; Provisi 96.8 0.0046 9.9E-08 52.5 7.5 54 49-109 43-105 (119)
38 PLN00044 multi-copper oxidase- 96.7 0.021 4.4E-07 61.6 13.2 82 182-276 49-131 (596)
39 COG2132 SufI Putative multicop 96.2 0.008 1.7E-07 63.0 6.3 76 182-263 343-421 (451)
40 PF13473 Cupredoxin_1: Cupredo 96.2 0.0041 8.9E-08 51.3 3.1 73 27-112 13-96 (104)
41 PF00127 Copper-bind: Copper b 96.0 0.0068 1.5E-07 49.6 3.7 55 52-109 16-85 (99)
42 TIGR02657 amicyanin amicyanin. 95.8 0.021 4.6E-07 45.1 5.5 55 52-111 10-73 (83)
43 PRK10883 FtsI repressor; Provi 95.7 0.017 3.7E-07 60.8 5.8 68 184-260 363-433 (471)
44 TIGR02656 cyanin_plasto plasto 95.4 0.033 7.1E-07 45.6 5.3 57 50-109 14-85 (99)
45 PF07732 Cu-oxidase_3: Multico 95.2 0.0084 1.8E-07 50.7 1.3 85 181-277 14-99 (117)
46 KOG1263 Multicopper oxidases [ 95.1 0.43 9.4E-06 51.1 14.0 84 181-277 47-131 (563)
47 PRK02888 nitrous-oxide reducta 94.5 0.041 8.8E-07 58.9 4.5 53 49-110 551-617 (635)
48 PF00394 Cu-oxidase: Multicopp 91.5 0.25 5.3E-06 44.0 4.2 40 400-441 59-98 (159)
49 TIGR03102 halo_cynanin halocya 89.9 0.96 2.1E-05 38.1 6.1 54 50-111 39-103 (115)
50 TIGR02375 pseudoazurin pseudoa 88.8 1.1 2.3E-05 37.9 5.6 54 52-111 14-75 (116)
51 COG3794 PetE Plastocyanin [Ene 88.0 1 2.2E-05 38.6 4.9 53 52-110 52-114 (128)
52 PF00116 COX2: Cytochrome C ox 87.7 1.1 2.3E-05 38.1 5.0 49 52-109 45-103 (120)
53 TIGR03096 nitroso_cyanin nitro 86.8 2.2 4.8E-05 36.9 6.4 48 199-263 60-107 (135)
54 TIGR03094 sulfo_cyanin sulfocy 85.1 7.3 0.00016 35.3 8.9 67 46-113 77-173 (195)
55 PF06525 SoxE: Sulfocyanin (So 83.3 6.7 0.00014 36.0 8.1 82 31-113 58-174 (196)
56 TIGR02656 cyanin_plasto plasto 82.0 3 6.5E-05 33.9 5.0 59 200-264 17-76 (99)
57 PF13473 Cupredoxin_1: Cupredo 80.7 2.9 6.2E-05 34.2 4.5 30 199-229 34-63 (104)
58 TIGR03095 rusti_cyanin rusticy 77.0 4.6 9.9E-05 35.6 4.9 30 200-229 52-81 (148)
59 COG1622 CyoA Heme/copper-type 62.4 14 0.00031 35.4 5.1 49 53-110 137-195 (247)
60 PRK02710 plastocyanin; Provisi 62.4 17 0.00037 30.5 5.1 51 199-264 46-96 (119)
61 TIGR02866 CoxB cytochrome c ox 59.9 28 0.00061 32.2 6.5 49 52-109 116-174 (201)
62 KOG4063 Major epididymal secre 59.0 48 0.001 29.1 7.2 18 81-98 106-123 (158)
63 PRK10378 inactive ferrous ion 55.0 65 0.0014 32.9 8.6 94 13-112 5-107 (375)
64 PF14344 DUF4397: Domain of un 45.6 61 0.0013 26.9 5.9 19 211-229 3-22 (122)
65 PF12690 BsuPI: Intracellular 44.7 27 0.00058 27.4 3.2 33 73-106 41-80 (82)
66 PF12690 BsuPI: Intracellular 36.7 1.4E+02 0.0031 23.2 6.3 51 209-260 3-64 (82)
67 PF07691 PA14: PA14 domain; I 36.5 1.3E+02 0.0028 25.4 6.7 56 200-260 52-114 (145)
68 PTZ00047 cytochrome c oxidase 34.7 76 0.0016 28.4 4.8 47 54-109 84-130 (162)
69 PF05753 TRAP_beta: Translocon 34.7 94 0.002 28.3 5.6 32 75-106 73-105 (181)
70 PRK05461 apaG CO2+/MG2+ efflux 34.1 1E+02 0.0022 26.3 5.4 48 209-259 32-83 (127)
71 PF04379 DUF525: Protein of un 33.5 71 0.0015 25.5 4.1 48 209-259 15-66 (90)
72 PF04744 Monooxygenase_B: Mono 33.5 58 0.0013 32.9 4.3 53 46-110 56-109 (381)
73 PF10989 DUF2808: Protein of u 33.4 58 0.0013 28.4 3.9 29 82-110 96-127 (146)
74 PF11142 DUF2917: Protein of u 33.4 85 0.0018 23.2 4.2 47 202-260 2-48 (63)
75 MTH00098 COX2 cytochrome c oxi 32.8 74 0.0016 30.1 4.8 37 64-109 161-197 (227)
76 MTH00129 COX2 cytochrome c oxi 32.7 84 0.0018 29.8 5.1 37 64-109 161-197 (230)
77 MTH00047 COX2 cytochrome c oxi 31.9 80 0.0017 29.1 4.7 42 59-109 132-173 (194)
78 TIGR03102 halo_cynanin halocya 31.1 1.6E+02 0.0034 24.7 5.9 59 199-274 41-99 (115)
79 TIGR02375 pseudoazurin pseudoa 30.7 89 0.0019 26.2 4.4 19 199-217 14-32 (116)
80 cd00918 Der-p2_like Several gr 30.3 60 0.0013 27.4 3.3 18 81-98 71-88 (120)
81 MTH00140 COX2 cytochrome c oxi 28.5 3.7E+02 0.008 25.3 8.8 48 53-109 140-197 (228)
82 PF01333 Apocytochr_F_C: Apocy 27.3 16 0.00034 30.5 -0.7 28 36-63 23-54 (118)
83 MTH00185 COX2 cytochrome c oxi 26.0 1.1E+02 0.0025 28.9 4.8 37 64-109 161-197 (230)
84 PF00116 COX2: Cytochrome C ox 25.9 2.8E+02 0.006 23.2 6.7 39 200-240 46-84 (120)
85 COG4454 Uncharacterized copper 25.5 52 0.0011 29.1 2.2 57 198-257 61-123 (158)
86 cd08058 MPN_euk_mb Mpr1p, Pad1 24.7 35 0.00077 28.4 1.0 7 105-111 70-76 (119)
87 PF06236 MelC1: Tyrosinase co- 24.5 1.4E+02 0.003 25.4 4.4 41 203-243 47-92 (125)
88 PF02102 Peptidase_M35: Deuter 24.2 25 0.00055 35.6 0.0 45 59-108 76-122 (359)
89 KOG3858 Ephrin, ligand for Eph 23.9 85 0.0018 29.8 3.4 49 13-64 5-54 (233)
90 MTH00008 COX2 cytochrome c oxi 22.6 1.6E+02 0.0034 27.9 5.0 36 64-108 161-196 (228)
91 KOG4078 Putative mitochondrial 22.6 52 0.0011 28.4 1.5 37 204-242 120-156 (173)
92 PF15415 DUF4622: Protein of u 22.4 1.7E+02 0.0038 27.8 5.0 42 200-243 94-137 (310)
93 PRK03641 hypothetical protein; 21.9 97 0.0021 29.1 3.4 39 13-51 1-39 (220)
94 KOG1151 Tousled-like protein k 21.9 2E+02 0.0044 30.2 5.8 61 30-108 587-648 (775)
95 KOG4680 Uncharacterized conser 21.9 2.8E+02 0.0061 24.1 5.8 25 81-105 95-122 (153)
96 TIGR01432 QOXA cytochrome aa3 21.7 3.7E+02 0.0081 25.0 7.4 42 58-108 145-186 (217)
97 COG4263 NosZ Nitrous oxide red 21.1 1.2E+02 0.0025 31.8 3.9 47 53-108 558-608 (637)
98 cd00912 ML The ML (MD-2-relate 20.9 82 0.0018 26.5 2.5 17 81-97 78-94 (127)
99 PF08139 LPAM_1: Prokaryotic m 20.4 1E+02 0.0022 18.5 2.1 18 13-30 7-24 (25)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=2.9e-72 Score=592.68 Aligned_cols=371 Identities=63% Similarity=1.090 Sum_probs=288.8
Q ss_pred ceeEEEEEEEEEEe------------eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCccccC
Q 047904 32 GITRHYEFDIKLQN------------LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYITQC 83 (448)
Q Consensus 32 ~~~~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vtq~ 83 (448)
+++|+|+|+|++.+ |||++|||+|++++||+| ||++|++++||||||++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 47899999999987 999999999999999999 99999999999999999999
Q ss_pred CCCCCCeeEEEEEeCCccceeEEeecCCCC------------------C----ccc---ccCCCccCCHHHHHHHHHhcC
Q 047904 84 PIQTGQSCVYNFTIVGRRGKLWWHAHMTCL------------------P----LWE---SAGEWFNGGPKAIINQALQTG 138 (448)
Q Consensus 84 pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~------------------P----~~e---~~~d~~~~~~~~~~~~~~~~g 138 (448)
||+||++|+|+|++++++||||||||.+.+ | ++| +++||++.+..+++......|
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 999999999999986699999999998766 1 234 889999998888776666566
Q ss_pred CCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEEEEecc
Q 047904 139 GGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAA 218 (448)
Q Consensus 139 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~ 218 (448)
..+.++|++||||+.+..++|.. ...+.|+|++||+|||||||+|
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~-----------------------------------~~~~~i~v~~G~~~RlRlINa~ 205 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSS-----------------------------------KDTFKLTVEPGKTYLLRIINAA 205 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCC-----------------------------------CCceEEEECCCCEEEEEEEecc
Confidence 65667899999999765555542 1237899999999999999999
Q ss_pred CCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCccccccc-----------------------CCcceEEEEEEeC
Q 047904 219 LNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGTF-----------------------DNSTVAGILEYER 275 (448)
Q Consensus 219 ~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~~-----------------------~~~~~~aiL~Y~~ 275 (448)
+...+.|+||||+|+|||+||.+++|+.++++.|++||||||.+ ....+.|||+|.+
T Consensus 206 ~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~ 285 (539)
T TIGR03389 206 LNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKG 285 (539)
T ss_pred CCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECC
Confidence 99999999999999999999999999999999999999999610 1234799999987
Q ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCccceeeeccccccccCCCCCCCCCCCcceEEEEEEeeC-------------CCC
Q 047904 276 PPNFHHSSNSIKKLPLFKPILHALKDISFATCFTSKLRSLASTQFPANVPQNVDRRFFFTVGLG-------------TSP 342 (448)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~l~~~~~-------------~~~ 342 (448)
+.. ...+.. +..+.+++......+..+++++..+.++..+|..+++++++.+++. +..
T Consensus 286 ~~~--------~~~p~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (539)
T TIGR03389 286 TSN--------SAKPIL-PTLPAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTR 356 (539)
T ss_pred CCC--------CCCCCC-CCCCCCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcccccccCCCcE
Confidence 643 111111 2222233221111111234444333334445556777777666542 223
Q ss_pred CcccccceeeecCChhhhhhhhcCCCCCccCCCCCCCCCccCCCCCCC-CCCCccCCceeEEEeecCCEEEEEEeecCCC
Q 047904 343 CQTSVNNISFVMPTTALFQAHFIGKPNGVYTPDFPTSPLIPFNYTGNP-PNNTMVSNGTTLVVLTFNTNVELIMQDTSIL 421 (448)
Q Consensus 343 ~~~~iN~~sf~~p~~pll~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~v~~g~~Vdivi~N~~~~ 421 (448)
+.|+|||++|..|.+|+|.+.+.+++ |.+..+|+..+|++|++++.. ..++..+.+++++.++.|++|||||+|....
T Consensus 357 ~~w~in~~s~~~p~~p~l~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~ 435 (539)
T TIGR03389 357 FAASMNNISFVMPTTALLQAHYFGIS-GVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSIL 435 (539)
T ss_pred EEEEECCcccCCCCcchhhhhhcccC-CccccCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcC
Confidence 46999999999999999988776554 556666777888888766542 2233345678999999999999999997533
Q ss_pred CCCCCCcccCCCceEEEEecCCCCCC
Q 047904 422 GTESHPLHLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 422 ~~~~HP~HLHGh~F~Vl~~G~G~~~~ 447 (448)
....||||||||+||||++|.|.|++
T Consensus 436 ~~~~HP~HLHGh~F~Vlg~g~g~~~~ 461 (539)
T TIGR03389 436 GSENHPIHLHGYNFFVVGTGFGNFDP 461 (539)
T ss_pred CCCCCcEeEcCCceEEEEeccCCCCc
Confidence 35689999999999999999999964
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=6.5e-72 Score=586.90 Aligned_cols=361 Identities=27% Similarity=0.445 Sum_probs=276.2
Q ss_pred eeceeEEEEEEEEEEe--------------eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCc
Q 047904 30 AFGITRHYEFDIKLQN--------------LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAY 79 (448)
Q Consensus 30 ~~~~~~~~~l~i~~~~--------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~ 79 (448)
|.+.+|+|+|+|++.+ ||||+|||+|++++||+| |||+|+.++|||||++
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~ 102 (596)
T PLN00044 23 AGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGG 102 (596)
T ss_pred cCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCC
Confidence 4678899999999865 999999999999999999 9999999999999988
Q ss_pred cccCCCCCCCeeEEEEEeCCccceeEEeecCCCC-------------------C----c-cc---ccCCCccCCHHHHHH
Q 047904 80 ITQCPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL-------------------P----L-WE---SAGEWFNGGPKAIIN 132 (448)
Q Consensus 80 vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~-------------------P----~-~e---~~~d~~~~~~~~~~~ 132 (448)
|||||+||++|+|+|++++|+||||||||.+.| | + +| +++||++.+..++ .
T Consensus 103 -TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~-~ 180 (596)
T PLN00044 103 -TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRAL-R 180 (596)
T ss_pred -CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHH-H
Confidence 999999999999999997799999999999988 1 2 35 8999999987654 3
Q ss_pred HHHhcCCCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEE
Q 047904 133 QALQTGGGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLL 212 (448)
Q Consensus 133 ~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~Rl 212 (448)
.....|..+..+|+++|||++...++|+. +.|+. ..++++|++||+|||
T Consensus 181 ~~l~~g~~~~~~d~~lING~g~~~~n~~~-----------------------~~~~~--------~~~~i~V~~Gk~yRl 229 (596)
T PLN00044 181 RALDAGDLLGAPDGVLINAFGPYQYNDSL-----------------------VPPGI--------TYERINVDPGKTYRF 229 (596)
T ss_pred HHHhcCCCCCCCCceEEcccCccccCCcc-----------------------ccCCC--------ccceEEECCCCEEEE
Confidence 44455554567899999999643333331 01111 236899999999999
Q ss_pred EEEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCcccccc------------------------cCCcceE
Q 047904 213 RIINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGT------------------------FDNSTVA 268 (448)
Q Consensus 213 RliNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~------------------------~~~~~~~ 268 (448)
||||++..+.+.|+||||+|+|||+||.+++|+.+++|.|++|||||+. +++..+.
T Consensus 230 RiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~ 309 (596)
T PLN00044 230 RVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGV 309 (596)
T ss_pred EEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCccee
Confidence 9999999999999999999999999999999999999999999999960 1224678
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCcCCcCCC-CCCccceeeeccccccccCCCCCCCCCCCcceEEEEEEeeC----C---
Q 047904 269 GILEYERPPNFHHSSNSIKKLPLFKPILHA-LKDISFATCFTSKLRSLASTQFPANVPQNVDRRFFFTVGLG----T--- 340 (448)
Q Consensus 269 aiL~Y~~~~~~~~~~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~l~~~~~----~--- 340 (448)
|||+|.++.. ..+.+ . |.+|. +++......+...++++..++.+.++|+..+....+.++.. .
T Consensus 310 AIl~Y~~~~~-------~~~~~-~-P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 380 (596)
T PLN00044 310 AILHYSNSQG-------PASGP-L-PDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAP 380 (596)
T ss_pred EEEEECCCCC-------CCCCC-C-CCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccc
Confidence 9999987542 01111 2 44453 55544333233455544333333334443333323332211 0
Q ss_pred ----CCCcccccceeeecCChhhhhhhhcCCCCCccCCCCCCCCCccCCCCCCCCCCCccCCceeEEEeecCCEEEEEEe
Q 047904 341 ----SPCQTSVNNISFVMPTTALFQAHFIGKPNGVYTPDFPTSPLIPFNYTGNPPNNTMVSNGTTLVVLTFNTNVELIMQ 416 (448)
Q Consensus 341 ----~~~~~~iN~~sf~~p~~pll~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~Vdivi~ 416 (448)
....|+|||+||..|++|+|.+.+.+++ |+|..+|++.||... ....+.++.++.|++|||||+
T Consensus 381 ~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~-gv~~~~fp~~pp~~~-----------~~~~t~v~~~~~n~~VeiV~q 448 (596)
T PLN00044 381 ELIDGKLRATLNEISYIAPSTPLMLAQIFNVP-GVFKLDFPNHPMNRL-----------PKLDTSIINGTYKGFMEIIFQ 448 (596)
T ss_pred cccCCeEEEEECcccCCCCCCcchhhhhccCC-CcccCCCCCCCCccc-----------cccCceEEEcCCCCEEEEEEe
Confidence 1136999999999999999977776665 888888888777411 123578899999999999999
Q ss_pred ecCCCCCCCCCcccCCCceEEEEecCCCCCC
Q 047904 417 DTSILGTESHPLHLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 417 N~~~~~~~~HP~HLHGh~F~Vl~~G~G~~~~ 447 (448)
|.. ...||||||||+|||||+|.|+||+
T Consensus 449 n~~---~~~HP~HLHGh~F~Vvg~G~G~~~~ 476 (596)
T PLN00044 449 NNA---TNVQSYHLDGYAFFVVGMDYGLWTD 476 (596)
T ss_pred CCC---CCCCCeeEcCccEEEEeecCCCCCC
Confidence 964 4689999999999999999999975
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.2e-69 Score=569.74 Aligned_cols=356 Identities=25% Similarity=0.423 Sum_probs=262.1
Q ss_pred eceeEEEEEEEEEEe------------eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCcccc
Q 047904 31 FGITRHYEFDIKLQN------------LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYITQ 82 (448)
Q Consensus 31 ~~~~~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vtq 82 (448)
++++++|+|+|++.+ ||||+|||+|++++||+| |||+|++++||||||+ ||
T Consensus 24 ~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~-TQ 102 (552)
T PLN02354 24 EDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG-TN 102 (552)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC-Cc
Confidence 457899999999987 999999999999999999 9999999999999999 99
Q ss_pred CCCCCCCeeEEEEEeCCccceeEEeecCCCC-------------C----------ccc---ccCCCccCCHHHHHHHHHh
Q 047904 83 CPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL-------------P----------LWE---SAGEWFNGGPKAIINQALQ 136 (448)
Q Consensus 83 ~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~-------------P----------~~e---~~~d~~~~~~~~~~~~~~~ 136 (448)
|||+||++|+|+|++.+|+||||||||...| | ++| +++||++.+..++. ....
T Consensus 103 cpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~~ 181 (552)
T PLN02354 103 CPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALK-KFLD 181 (552)
T ss_pred CCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHH-HHHh
Confidence 9999999999999986689999999999888 1 234 89999999876653 3444
Q ss_pred cCCCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEEEEe
Q 047904 137 TGGGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIIN 216 (448)
Q Consensus 137 ~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliN 216 (448)
.|..+..+|++||||+++..+. ...+.++|++||+|||||||
T Consensus 182 ~g~~~~~~d~~liNG~~~~~~~--------------------------------------~~~~~~~v~~Gk~yRlRiIN 223 (552)
T PLN02354 182 SGRTLGRPDGVLINGKSGKGDG--------------------------------------KDEPLFTMKPGKTYRYRICN 223 (552)
T ss_pred cCCCCCCCCeEEEeCCcCCCCC--------------------------------------CCceEEEECCCCEEEEEEEe
Confidence 5554557899999998642210 01278999999999999999
Q ss_pred ccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCcccccc-----------------c--CCcceEEEEEEeCCC
Q 047904 217 AALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGT-----------------F--DNSTVAGILEYERPP 277 (448)
Q Consensus 217 a~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~-----------------~--~~~~~~aiL~Y~~~~ 277 (448)
+|+...+.|+||||+|+|||+||.+++|..+++|.|++||||||. + ....+.|||+|+++.
T Consensus 224 a~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~ 303 (552)
T PLN02354 224 VGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGK 303 (552)
T ss_pred cCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCC
Confidence 999999999999999999999999999999999999999999971 0 124678999998764
Q ss_pred CCCCCCCCCCCCCCcCCcCCC-CCCcc-ceeeeccccccccCCCCCCCC----CCCcceEEEEEEeeCCC--CCcccccc
Q 047904 278 NFHHSSNSIKKLPLFKPILHA-LKDIS-FATCFTSKLRSLASTQFPANV----PQNVDRRFFFTVGLGTS--PCQTSVNN 349 (448)
Q Consensus 278 ~~~~~~~~~~~~~~~~p~~p~-~~~~~-~~~~~~~~l~~l~~~~~p~~~----p~~~d~~~~l~~~~~~~--~~~~~iN~ 349 (448)
. ...+.. |..+. +.... ...++..++.+....+.+... ....++++.+..+.... ...|+|||
T Consensus 304 ~--------~~~~~~-p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn 374 (552)
T PLN02354 304 G--------PASPEL-PEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNG 374 (552)
T ss_pred C--------CCCCCC-CCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECC
Confidence 2 111111 22111 00000 000111222222111111000 01234445444432111 23699999
Q ss_pred eeeecCChhhhhhhhcCCCCCccCCC-CCCCCCccCCCCCCCCCCCccCCceeEEEeecCCEEEEEEeecCCCCCCCCCc
Q 047904 350 ISFVMPTTALFQAHFIGKPNGVYTPD-FPTSPLIPFNYTGNPPNNTMVSNGTTLVVLTFNTNVELIMQDTSILGTESHPL 428 (448)
Q Consensus 350 ~sf~~p~~pll~~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~Vdivi~N~~~~~~~~HP~ 428 (448)
++|..|++|+|.+.+.+++.|.+..+ ++..+|..++ ..+.+++++.++.|++|||||+|.. ...|||
T Consensus 375 ~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~---------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~ 442 (552)
T PLN02354 375 VSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKIT---------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSW 442 (552)
T ss_pred ccCCCCCCChHHhhhhcccCCccccCccccCCccccC---------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCC
Confidence 99999999998887655544555433 4444553211 1344678899999999999999964 568999
Q ss_pred ccCCCceEEEEecCCCCCC
Q 047904 429 HLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 429 HLHGh~F~Vl~~G~G~~~~ 447 (448)
|||||+|||||+|.|.|++
T Consensus 443 HLHGh~F~Vlg~G~G~~~~ 461 (552)
T PLN02354 443 HLDGYSFFAVAVEPGTWTP 461 (552)
T ss_pred cCCCccEEEEeecCCCCCc
Confidence 9999999999999999975
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.1e-69 Score=567.44 Aligned_cols=350 Identities=26% Similarity=0.432 Sum_probs=265.8
Q ss_pred eeceeEEEEEEEEEEe------------eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCccc
Q 047904 30 AFGITRHYEFDIKLQN------------LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYIT 81 (448)
Q Consensus 30 ~~~~~~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vt 81 (448)
...++++|+|+|++.. ||||+|||+|++++||+| ||++|++++|||||++ |
T Consensus 12 ~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-t 90 (536)
T PLN02792 12 KADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-T 90 (536)
T ss_pred hcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-C
Confidence 3455679999999987 999999999999999999 9999999999999988 9
Q ss_pred cCCCCCCCeeEEEEEeCCccceeEEeecCCCC-------------------C----ccc---ccCCCccCCHHHHHHHHH
Q 047904 82 QCPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL-------------------P----LWE---SAGEWFNGGPKAIINQAL 135 (448)
Q Consensus 82 q~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~-------------------P----~~e---~~~d~~~~~~~~~~~~~~ 135 (448)
||||+||++|+|+|++++|+||||||||...| | ++| +++||++.+...+ ....
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~-~~~~ 169 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTL-KKIL 169 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHH-HHHh
Confidence 99999999999999987789999999999888 1 234 8999999887664 3334
Q ss_pred hcCCC-CCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEEE
Q 047904 136 QTGGG-PNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRI 214 (448)
Q Consensus 136 ~~g~~-~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRl 214 (448)
..|.. +.++|.+||||++.. + .++|+|++||+|||||
T Consensus 170 ~~g~~~~~~~d~~liNG~~~~-~-----------------------------------------~~~~~v~~Gk~yRlRl 207 (536)
T PLN02792 170 DGGRKLPLMPDGVMINGQGVS-Y-----------------------------------------VYSITVDKGKTYRFRI 207 (536)
T ss_pred hccCcCCCCCCEEEEeccCCC-C-----------------------------------------cceEEECCCCEEEEEE
Confidence 44443 337899999998631 1 1679999999999999
Q ss_pred EeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCcccccc-----------------c--CCcceEEEEEEeC
Q 047904 215 INAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGT-----------------F--DNSTVAGILEYER 275 (448)
Q Consensus 215 iNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~-----------------~--~~~~~~aiL~Y~~ 275 (448)
||+|..+.+.|+|+||+|+|||+||.+++|..+++|.|++|||||+. + .+..+.|||+|.+
T Consensus 208 iNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g 287 (536)
T PLN02792 208 SNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSN 287 (536)
T ss_pred EEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECC
Confidence 99999999999999999999999999999999999999999999961 1 1346799999987
Q ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCccceeeeccccccccCCCCCCCCCCC--------cceEEEEEEeeCC--CCCcc
Q 047904 276 PPNFHHSSNSIKKLPLFKPILHALKDISFATCFTSKLRSLASTQFPANVPQN--------VDRRFFFTVGLGT--SPCQT 345 (448)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~--------~d~~~~l~~~~~~--~~~~~ 345 (448)
+.. . .+.. |..|.+++......+...++.+..++.+.++|+. .++++.+...+.. ....|
T Consensus 288 ~~~--------~-~~~~-p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (536)
T PLN02792 288 SKG--------H-KIIH-ARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRY 357 (536)
T ss_pred CCC--------C-CCCC-CCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEE
Confidence 642 1 1111 3334444333322222222332222223334432 2233333332211 12369
Q ss_pred cccceeeecCChhhhhhhhcCCCCCccCCC-CCCCCCccCCCCCCCCCCCccCCceeEEEeecCCEEEEEEeecCCCCCC
Q 047904 346 SVNNISFVMPTTALFQAHFIGKPNGVYTPD-FPTSPLIPFNYTGNPPNNTMVSNGTTLVVLTFNTNVELIMQDTSILGTE 424 (448)
Q Consensus 346 ~iN~~sf~~p~~pll~~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~Vdivi~N~~~~~~~ 424 (448)
+|||+||..|++|+|.+.+++++ |++..+ |+..||..++ ...++.++.++.|++|||||+|.. ..
T Consensus 358 ~iN~~s~~~p~~p~L~a~~~~~~-g~~~~~~~~~~p~~~~~----------~~~~~~v~~~~~~~~VeiViqn~~---~~ 423 (536)
T PLN02792 358 AINGVSFVPSDTPLKLADHFKIK-GVFKVGSIPDKPRRGGG----------MRLDTSVMGAHHNAFLEIIFQNRE---KI 423 (536)
T ss_pred EECCcccCCCCCchhhhhhhccC-CCcCcccCccCCcccCC----------CccCceEEEcCCCCEEEEEEECCC---CC
Confidence 99999999999999988777665 777553 7766664222 123578899999999999999964 46
Q ss_pred CCCcccCCCceEEEEecCCCCCC
Q 047904 425 SHPLHLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 425 ~HP~HLHGh~F~Vl~~G~G~~~~ 447 (448)
.||||||||+|||||+|.|.||+
T Consensus 424 ~HP~HLHGh~F~Vvg~G~G~~~~ 446 (536)
T PLN02792 424 VQSYHLDGYNFWVVGINKGIWSR 446 (536)
T ss_pred CCCeeeCCCceEEEeecCCCCCc
Confidence 89999999999999999999975
No 5
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.5e-69 Score=565.94 Aligned_cols=344 Identities=29% Similarity=0.497 Sum_probs=259.8
Q ss_pred eeceeEEEEEEEEEEe------------eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCccc
Q 047904 30 AFGITRHYEFDIKLQN------------LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYIT 81 (448)
Q Consensus 30 ~~~~~~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vt 81 (448)
+++++++|+|+|++.+ ||||+|||+|++++||+| |||+|.+++|||||++ |
T Consensus 24 ~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~-t 102 (543)
T PLN02991 24 AEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG-T 102 (543)
T ss_pred ccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-C
Confidence 4578999999999987 999999999999999999 9999999999999998 9
Q ss_pred cCCCCCCCeeEEEEEeCCccceeEEeecCCCC-------------------C----ccc---ccCCCccCCHHHHHHHHH
Q 047904 82 QCPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL-------------------P----LWE---SAGEWFNGGPKAIINQAL 135 (448)
Q Consensus 82 q~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~-------------------P----~~e---~~~d~~~~~~~~~~~~~~ 135 (448)
||||+||++|+|+|++++|+||||||||.+.| | ++| +++||++.+..++... .
T Consensus 103 QcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~-~ 181 (543)
T PLN02991 103 TCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ-L 181 (543)
T ss_pred CCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH-h
Confidence 99999999999999986689999999998777 1 234 8999999987665433 3
Q ss_pred hcCCCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEEEE
Q 047904 136 QTGGGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRII 215 (448)
Q Consensus 136 ~~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRli 215 (448)
..+..++++|++||||++. .++++|++||+||||||
T Consensus 182 ~~~~~~~~~d~~liNG~~~--------------------------------------------~~~~~v~~G~~yRlRiI 217 (543)
T PLN02991 182 DNGGKLPLPDGILINGRGS--------------------------------------------GATLNIEPGKTYRLRIS 217 (543)
T ss_pred hcCCCCCCCCEEEEccCCC--------------------------------------------CceEEECCCCEEEEEEE
Confidence 3444456889999999842 15799999999999999
Q ss_pred eccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCcccccc-------------------cCCcceEEEEEEeCC
Q 047904 216 NAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGT-------------------FDNSTVAGILEYERP 276 (448)
Q Consensus 216 Na~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~-------------------~~~~~~~aiL~Y~~~ 276 (448)
|+++...+.|+|+||+|+|||+||.+++|..+++|.|++|||||+. .....+.|||+|+++
T Consensus 218 Na~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~ 297 (543)
T PLN02991 218 NVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNS 297 (543)
T ss_pred eccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999971 012467999999876
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccc--eeeeccccccccCCCCCCCCCC--------CcceEEEEEEeeCC--CCCc
Q 047904 277 PNFHHSSNSIKKLPLFKPILHALKDISF--ATCFTSKLRSLASTQFPANVPQ--------NVDRRFFFTVGLGT--SPCQ 344 (448)
Q Consensus 277 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~--~~~~~~~l~~l~~~~~p~~~p~--------~~d~~~~l~~~~~~--~~~~ 344 (448)
... .+.+ . |..|....... ..+....|.+.. +.++|. ..++++.+..++.. ....
T Consensus 298 ~~~-------~~~~-~-p~~p~~~~~~~~~~~~~~~~l~p~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 364 (543)
T PLN02991 298 AGP-------VSGP-I-PDGPIQLSWSFDQARAIKTNLTASG----PRPNPQGSYHYGKINITRTIRLANSAGNIEGKQR 364 (543)
T ss_pred CCC-------CCCC-C-CCCCccccccccchhhhhhcccCCC----CCCCCCccccccccccceeEEEeecccccCceEE
Confidence 420 0001 1 22221111100 111223343321 122222 23333334332221 1236
Q ss_pred ccccceeeecCChhhhhhhhcCCCCCccCCC-CCCCCCccCCCCCCCCCCCccCCceeEEEeecCCEEEEEEeecCCCCC
Q 047904 345 TSVNNISFVMPTTALFQAHFIGKPNGVYTPD-FPTSPLIPFNYTGNPPNNTMVSNGTTLVVLTFNTNVELIMQDTSILGT 423 (448)
Q Consensus 345 ~~iN~~sf~~p~~pll~~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~Vdivi~N~~~~~~ 423 (448)
|+|||++|..|.+|+|.+.+.+++ |.|..+ |++.+|.. .....+.++.++.|++|||||+|.. .
T Consensus 365 ~~iN~~s~~~p~~p~L~~~~~~~~-g~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~ 429 (543)
T PLN02991 365 YAVNSASFYPADTPLKLADYFKIA-GVYNPGSIPDQPTNG-----------AIFPVTSVMQTDYKAFVEIVFENWE---D 429 (543)
T ss_pred EEECCCccCCCCCChhhhhhhccc-CccccccccccCCCC-----------ccccCCcEEEcCCCCEEEEEEeCCC---C
Confidence 999999999999999988777554 777554 54444421 1123467889999999999999964 4
Q ss_pred CCCCcccCCCceEEEEecCCCCCC
Q 047904 424 ESHPLHLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 424 ~~HP~HLHGh~F~Vl~~G~G~~~~ 447 (448)
.+||||||||+|||||+|.|.|++
T Consensus 430 ~~HP~HLHGh~F~Vvg~G~G~f~~ 453 (543)
T PLN02991 430 IVQTWHLDGYSFYVVGMELGKWSA 453 (543)
T ss_pred CCCCeeeCCcceEEEEeCCCCCCc
Confidence 689999999999999999999975
No 6
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-68 Score=554.40 Aligned_cols=375 Identities=45% Similarity=0.757 Sum_probs=306.2
Q ss_pred HHHHHHhcCceeceeEEEEEEEEEEe------------eCCcCCCceEEEecCCee----------------eecccCCC
Q 047904 20 FIALCLLAEPAFGITRHYEFDIKLQN------------LNGKFPGPRIVAREGDQL----------------HGIRRLRS 71 (448)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~ 71 (448)
+++++++...++++++.|+|+|+++. |||++|||+|+|++||+| ||++|..+
T Consensus 14 ~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn 93 (563)
T KOG1263|consen 14 GSLLLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKN 93 (563)
T ss_pred HHHHHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCC
Confidence 33445666778999999999999997 999999999999999999 99999999
Q ss_pred CCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeecCCCC-----------------------Cccc---ccCCCccC
Q 047904 72 GWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL-----------------------PLWE---SAGEWFNG 125 (448)
Q Consensus 72 ~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~-----------------------P~~e---~~~d~~~~ 125 (448)
+|||| +++|||||+||++|+|+|++++|.||||||+|...+ |++| +++||+++
T Consensus 94 ~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~ 172 (563)
T KOG1263|consen 94 PWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKN 172 (563)
T ss_pred ccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccc
Confidence 99999 899999999999999999998899999999999988 3667 99999995
Q ss_pred -CHHHHHHHHHhcCCCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEE
Q 047904 126 -GPKAIINQALQTGGGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKV 204 (448)
Q Consensus 126 -~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v 204 (448)
+...+.......+..+..+|..+|||+++..++|. ++++|
T Consensus 173 ~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~---------------------------------------~~l~v 213 (563)
T KOG1263|consen 173 LNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNCT---------------------------------------PTLTV 213 (563)
T ss_pred cCHHHHHHhhccCCCCCCCCCceEECCCCCcccCce---------------------------------------eEEEE
Confidence 77777666555555555589999999987777662 78999
Q ss_pred eCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCccccc-----------------ccC----
Q 047904 205 KPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNG-----------------TFD---- 263 (448)
Q Consensus 205 ~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv-----------------~~~---- 263 (448)
++||+|||||||+|....+.|+|+||+|+||++||.+++|..+++|.|.|||||++ .++
T Consensus 214 ~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~ 293 (563)
T KOG1263|consen 214 EPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNV 293 (563)
T ss_pred cCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCc
Confidence 99999999999999999999999999999999999999999999999999999996 012
Q ss_pred --CcceEEEEEEeCCCCCCCCCCCCCCCCCcCCcCCCCCCccceeeeccccccccCCCCCCCCCCCcceEEEEEEeeC--
Q 047904 264 --NSTVAGILEYERPPNFHHSSNSIKKLPLFKPILHALKDISFATCFTSKLRSLASTQFPANVPQNVDRRFFFTVGLG-- 339 (448)
Q Consensus 264 --~~~~~aiL~Y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~l~~~~~-- 339 (448)
+....|+|+|.+... + .+ ...+.. +..|..++......+..++|.+....++.+.|+..++.....++.+
T Consensus 294 ~~~~t~~~~l~y~~~~~--~--~s-~~~~~~-~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~ 367 (563)
T KOG1263|consen 294 PFNLTTTGILRYSGSTH--P--AS-EKLPIY-PFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLK 367 (563)
T ss_pred ceeeeEEEEEEEeCCcc--c--Cc-ccCccc-ccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEE
Confidence 567899999998432 0 00 111112 3445555555555566778877666667778877776655555432
Q ss_pred --CC------CCcccccceeeecCChhhhhhhhcCCCCCccCCCCCCCCCccCCCCCCCCCCCccCCceeEEEeecCCEE
Q 047904 340 --TS------PCQTSVNNISFVMPTTALFQAHFIGKPNGVYTPDFPTSPLIPFNYTGNPPNNTMVSNGTTLVVLTFNTNV 411 (448)
Q Consensus 340 --~~------~~~~~iN~~sf~~p~~pll~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~V 411 (448)
.. ..+++||++||+.|++|++.+.+.+...+.+.++|+..|+..|++++ .|.|++++.++++++|
T Consensus 368 ~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~-------~~~~t~v~~~~~~~~v 440 (563)
T KOG1263|consen 368 LCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTG-------PTLGTSVMKLEFNSFV 440 (563)
T ss_pred eccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCcc-------ccccceEEEeecCCEE
Confidence 11 22699999999999987655555444337777889888888777664 4678999999999999
Q ss_pred EEEEeecCCCCCCCCCcccCCCceEEEEecCCCCCC
Q 047904 412 ELIMQDTSILGTESHPLHLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 412 divi~N~~~~~~~~HP~HLHGh~F~Vl~~G~G~~~~ 447 (448)
|||++|.+......||||||||+|||||.|.|+|++
T Consensus 441 eIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~ 476 (563)
T KOG1263|consen 441 EIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDP 476 (563)
T ss_pred EEEEeCCccccCCCCccceeceEEEEEEecccccCc
Confidence 999999886667789999999999999999999987
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3.5e-68 Score=556.49 Aligned_cols=349 Identities=26% Similarity=0.456 Sum_probs=255.6
Q ss_pred eeceeEEEEEEEEEEe------------eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCccc
Q 047904 30 AFGITRHYEFDIKLQN------------LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYIT 81 (448)
Q Consensus 30 ~~~~~~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vt 81 (448)
+++++|+|+|+|++.+ ||||+|||+|++++||+| ||++|++++||||||+ |
T Consensus 22 ~~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-t 100 (545)
T PLN02168 22 AFAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-T 100 (545)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-C
Confidence 3578999999999987 999999999999999999 9999999999999999 9
Q ss_pred cCCCCCCCeeEEEEEeCCccceeEEeecCCCC-------------C----------ccc---ccCCCccCCHHHHHHHHH
Q 047904 82 QCPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL-------------P----------LWE---SAGEWFNGGPKAIINQAL 135 (448)
Q Consensus 82 q~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~-------------P----------~~e---~~~d~~~~~~~~~~~~~~ 135 (448)
||||+||++|+|+|++++|+||||||||.+.| | ++| +++||++.+...+.. ..
T Consensus 101 QcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~ 179 (545)
T PLN02168 101 NCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRA-SL 179 (545)
T ss_pred cCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHh-hh
Confidence 99999999999999986689999999999888 1 233 899999987655432 23
Q ss_pred hcCCCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEEEE
Q 047904 136 QTGGGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRII 215 (448)
Q Consensus 136 ~~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRli 215 (448)
..|....++|++||||++. ..++++|++||+||||||
T Consensus 180 ~~g~~~~~~d~~liNG~~~-------------------------------------------~~~~~~v~~G~~yRlRii 216 (545)
T PLN02168 180 DNGHSLPNPDGILFNGRGP-------------------------------------------EETFFAFEPGKTYRLRIS 216 (545)
T ss_pred hcCCCCCCCCEEEEeccCC-------------------------------------------CcceEEeCCCCEEEEEEE
Confidence 3444445789999999852 016799999999999999
Q ss_pred eccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCccccccc----C-------------------CcceEEEEE
Q 047904 216 NAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGTF----D-------------------NSTVAGILE 272 (448)
Q Consensus 216 Na~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~~----~-------------------~~~~~aiL~ 272 (448)
|+++.+.+.|+||||+|+|||+||.+++|..+++|.|++|||||+.. + ...+.|||+
T Consensus 217 Na~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~ 296 (545)
T PLN02168 217 NVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDAYLGGVALIR 296 (545)
T ss_pred eccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCCCcceEEEEE
Confidence 99999999999999999999999999999999999999999999711 0 125789999
Q ss_pred EeCCCCCCCCCCCCCCCCCcCCcCCCCCCccceeeeccccccccCCCCCCCCCCC--------cceEEEEEEee--CCCC
Q 047904 273 YERPPNFHHSSNSIKKLPLFKPILHALKDISFATCFTSKLRSLASTQFPANVPQN--------VDRRFFFTVGL--GTSP 342 (448)
Q Consensus 273 Y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~--------~d~~~~l~~~~--~~~~ 342 (448)
|+++... ...| . |..|.+.+......+..+++....+..+.++|.. .+.++.+.... ....
T Consensus 297 Y~~~~~~-------~~~p-~-p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~ 367 (545)
T PLN02168 297 YPNSPLD-------PVGP-L-PLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGK 367 (545)
T ss_pred ECCCCCC-------CCCC-C-CCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCce
Confidence 9876420 1111 1 2333333332221221222211111111122221 23333333211 1112
Q ss_pred CcccccceeeecCChhhhhhhhcCCCCCccCC-CCCCCCCccCCCCCCCCCCCccCCceeEEEeecCCEEEEEEeecCCC
Q 047904 343 CQTSVNNISFVMPTTALFQAHFIGKPNGVYTP-DFPTSPLIPFNYTGNPPNNTMVSNGTTLVVLTFNTNVELIMQDTSIL 421 (448)
Q Consensus 343 ~~~~iN~~sf~~p~~pll~~~~~~~~~g~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~Vdivi~N~~~~ 421 (448)
..|+|||++|..|.+|+|.+.+.+++ +.+.. +|+..+|.. .....++++.++.|++|||||+|..
T Consensus 368 ~~~~iN~~s~~~p~~P~l~~~~~~~~-~~~~~~~~~~~p~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~-- 433 (545)
T PLN02168 368 LRYTINGVSFVYPGTPLKLVDHFQLN-DTIIPGMFPVYPSNK-----------TPTLGTSVVDIHYKDFYHIVFQNPL-- 433 (545)
T ss_pred EEEEECCCccCCCCCchhhhhhcccc-cccccCCCccCCCcC-----------ccccCceEEEecCCCEEEEEEeCCC--
Confidence 36999999999999998876655442 33322 244444310 0112467899999999999999964
Q ss_pred CCCCCCcccCCCceEEEEecCCCCCC
Q 047904 422 GTESHPLHLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 422 ~~~~HP~HLHGh~F~Vl~~G~G~~~~ 447 (448)
...||||||||+|||||+|.|.|++
T Consensus 434 -~~~HP~HLHGh~F~Vvg~g~g~~~~ 458 (545)
T PLN02168 434 -FSLESYHIDGYNFFVVGYGFGAWSE 458 (545)
T ss_pred -CCCCCeeeCCCceEEEECCCCCCCc
Confidence 4689999999999999999999985
No 8
>PLN02835 oxidoreductase
Probab=100.00 E-value=5.5e-67 Score=548.78 Aligned_cols=347 Identities=24% Similarity=0.433 Sum_probs=255.5
Q ss_pred eeceeEEEEEEEEEEe------------eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCccc
Q 047904 30 AFGITRHYEFDIKLQN------------LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYIT 81 (448)
Q Consensus 30 ~~~~~~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vt 81 (448)
+++++|+|+|+|++.. ||||+|||+||+++||+| |||+|++++|||||++ |
T Consensus 25 ~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~-t 103 (539)
T PLN02835 25 GEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG-T 103 (539)
T ss_pred ccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-C
Confidence 4568999999999986 999999999999999999 9999999999999999 9
Q ss_pred cCCCCCCCeeEEEEEeCCccceeEEeecCCCC-------------------C----ccc---ccCCCccCCHHHHHHHHH
Q 047904 82 QCPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL-------------------P----LWE---SAGEWFNGGPKAIINQAL 135 (448)
Q Consensus 82 q~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~-------------------P----~~e---~~~d~~~~~~~~~~~~~~ 135 (448)
||||+||++|+|+|++++|+||||||||...| | ++| +++||++.+..++... .
T Consensus 104 Q~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~-~ 182 (539)
T PLN02835 104 NCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR-L 182 (539)
T ss_pred cCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH-h
Confidence 99999999999999986789999999999888 1 234 8999999987765433 3
Q ss_pred hcCCCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEEEE
Q 047904 136 QTGGGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRII 215 (448)
Q Consensus 136 ~~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRli 215 (448)
..|....++|.+||||+.. +.++|++||+||||||
T Consensus 183 ~~g~~~~~~d~~liNG~~~---------------------------------------------~~~~v~~G~~yRlRli 217 (539)
T PLN02835 183 DSGKVLPFPDGVLINGQTQ---------------------------------------------STFSGDQGKTYMFRIS 217 (539)
T ss_pred hcCCCCCCCceEEEccccC---------------------------------------------ceEEECCCCEEEEEEE
Confidence 3454456788999999742 5689999999999999
Q ss_pred eccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCcccccc-----------------c--CCcceEEEEEEeCC
Q 047904 216 NAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGT-----------------F--DNSTVAGILEYERP 276 (448)
Q Consensus 216 Na~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~-----------------~--~~~~~~aiL~Y~~~ 276 (448)
|+|+.+.+.|+|+||+|+|||+||.+++|..+++|.|++|||||+. + ....+.|||+|.++
T Consensus 218 Na~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~ 297 (539)
T PLN02835 218 NVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNS 297 (539)
T ss_pred EcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCC
Confidence 9999999999999999999999999999999999999999999971 0 12457899999875
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCC-ccc--eeeeccccccccCCCCCCC---C-CCCcceEEEEEEeeCC--CCCcccc
Q 047904 277 PNFHHSSNSIKKLPLFKPILHALKD-ISF--ATCFTSKLRSLASTQFPAN---V-PQNVDRRFFFTVGLGT--SPCQTSV 347 (448)
Q Consensus 277 ~~~~~~~~~~~~~~~~~p~~p~~~~-~~~--~~~~~~~l~~l~~~~~p~~---~-p~~~d~~~~l~~~~~~--~~~~~~i 347 (448)
.. ...... |..|..+. ... ..+....+.+....+.+.. . ....++++.+...... ....|++
T Consensus 298 ~~--------~~~~~~-p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~i 368 (539)
T PLN02835 298 RT--------PASGPL-PALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAV 368 (539)
T ss_pred CC--------CCCCCC-CCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEE
Confidence 32 000011 22221100 000 0111111222111111100 0 0123555555432221 2247999
Q ss_pred cceeeecCChhhhhhhhcCCCCCccCCC-CCCCCCccCCCCCCCCCCCccCCceeEEEeecCCEEEEEEeecCCCCCCCC
Q 047904 348 NNISFVMPTTALFQAHFIGKPNGVYTPD-FPTSPLIPFNYTGNPPNNTMVSNGTTLVVLTFNTNVELIMQDTSILGTESH 426 (448)
Q Consensus 348 N~~sf~~p~~pll~~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~Vdivi~N~~~~~~~~H 426 (448)
||++|..|.+|+|.+.+.+.+ +.+..+ +...++ +...+.+++++.++.|++|||||+|.. ...|
T Consensus 369 N~~s~~~p~~P~L~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~H 433 (539)
T PLN02835 369 NGVSYVNSDTPLKLADYFGIP-GVFSVNSIQSLPS-----------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQ 433 (539)
T ss_pred CCcccCCCCCChhhhhhhcCC-CccccCccccCCC-----------CCccccCCeEEEcCCCCEEEEEEECCC---CCCC
Confidence 999999999998877665443 444322 111111 112345688999999999999999965 5689
Q ss_pred CcccCCCceEEEEecCCCCCC
Q 047904 427 PLHLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 427 P~HLHGh~F~Vl~~G~G~~~~ 447 (448)
|||||||+||||++|.|.|++
T Consensus 434 P~HLHGh~F~Vlg~G~g~~~~ 454 (539)
T PLN02835 434 SWHLDGYDFWVVGYGSGQWTP 454 (539)
T ss_pred CCCCCCccEEEEeccCCCCCc
Confidence 999999999999999999963
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=8.8e-66 Score=543.90 Aligned_cols=389 Identities=28% Similarity=0.472 Sum_probs=265.2
Q ss_pred ceeceeEEEEEEEEEEe------------eCCcCCCceEEEecCCee-----------------eecccCCCCCCCCCCc
Q 047904 29 PAFGITRHYEFDIKLQN------------LNGKFPGPRIVAREGDQL-----------------HGIRRLRSGWADGPAY 79 (448)
Q Consensus 29 ~~~~~~~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v-----------------HGl~~~~~~~~DGvp~ 79 (448)
.+++++|+|+|+|++.+ |||++|||+||+++||+| ||++|++++||||||+
T Consensus 18 ~~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g 97 (574)
T PLN02191 18 TASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG 97 (574)
T ss_pred hhccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc
Confidence 33578999999999987 999999999999999999 9999999999999999
Q ss_pred cccCCCCCCCeeEEEEEeCCccceeEEeecCCCC----------------C------ccc---ccCCCccCCHHHHHHHH
Q 047904 80 ITQCPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL----------------P------LWE---SAGEWFNGGPKAIINQA 134 (448)
Q Consensus 80 vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~----------------P------~~e---~~~d~~~~~~~~~~~~~ 134 (448)
+|||||+||++|+|+|++ .++||||||||...| | |+| +++||++....+.....
T Consensus 98 vtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~ 176 (574)
T PLN02191 98 VTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERLRYDGEFNLLLSDWWHESIPSQELGL 176 (574)
T ss_pred cccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCCCCCeeEEEeeeccccCChHHHHHhh
Confidence 999999999999999998 799999999999887 1 334 89999998754432222
Q ss_pred HhcC-CCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEE
Q 047904 135 LQTG-GGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLR 213 (448)
Q Consensus 135 ~~~g-~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlR 213 (448)
.... ....++|++||||++. +.|..... . . ....+ ....+++||+.. ..+|+|++||+||||
T Consensus 177 ~~~~~~~~~~~d~~liNG~g~--~~~~~~~~----~-~-~~~~~--~~~~~~~n~~~~-------p~~~~v~~G~~yRlR 239 (574)
T PLN02191 177 SSKPMRWIGEAQSILINGRGQ--FNCSLAAQ----F-S-NGTEL--PMCTFKEGDQCA-------PQTLRVEPNKTYRIR 239 (574)
T ss_pred ccCCCCcCCCCCceEECCCCC--CCCccccc----c-c-CCccc--ccceeccCCCCC-------ceEEEEcCCCEEEEE
Confidence 1111 1124679999999863 45542110 0 0 00000 011355666432 257999999999999
Q ss_pred EEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCccccccc---------------------CCcceEEEEE
Q 047904 214 IINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGTF---------------------DNSTVAGILE 272 (448)
Q Consensus 214 liNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~~---------------------~~~~~~aiL~ 272 (448)
|||+|+.+.++|+||||+|+|||+||.+++|+++++|.|++|||||+.. ....+.|||+
T Consensus 240 iINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~ 319 (574)
T PLN02191 240 LASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILN 319 (574)
T ss_pred EEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999610 0123679999
Q ss_pred EeCCCCCCCCCCCCCCCCCc-CCcCCCCCCccceeeeccccccccCCCCCCCCCCCcceEEEEEEeeCC-CCCcccccce
Q 047904 273 YERPPNFHHSSNSIKKLPLF-KPILHALKDISFATCFTSKLRSLASTQFPANVPQNVDRRFFFTVGLGT-SPCQTSVNNI 350 (448)
Q Consensus 273 Y~~~~~~~~~~~~~~~~~~~-~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~l~~~~~~-~~~~~~iN~~ 350 (448)
|.+... ...+.. .|..|.+++....... ....+.....+.++....+.++++...... ...+|+|||+
T Consensus 320 Y~~~~~--------~~~p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~ 389 (574)
T PLN02191 320 YVTAPA--------SKLPSSPPPVTPRWDDFERSKNF--SKKIFSAMGSPSPPKKYRKRLILLNTQNLIDGYTKWAINNV 389 (574)
T ss_pred ECCCCC--------CCCCCCCCCCCCcccccchhhcc--cccccccccCCCCCCcccceEEEecccceeCCeEEEEECcc
Confidence 987643 110110 0223333332211111 111111111111111234565555433211 2237999999
Q ss_pred eeecCChhhhhhhhcCCCCCccCCCCCCCC-CccCCCCCCCCCCCccCCceeEEEeecCCEEEEEEeecCCC---CCCCC
Q 047904 351 SFVMPTTALFQAHFIGKPNGVYTPDFPTSP-LIPFNYTGNPPNNTMVSNGTTLVVLTFNTNVELIMQDTSIL---GTESH 426 (448)
Q Consensus 351 sf~~p~~pll~~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~Vdivi~N~~~~---~~~~H 426 (448)
+|..|..|+|.+.+.+.. +.++.+++... +..|+...... ....+.+++++.++.|++|||||+|.... ....|
T Consensus 390 s~~~p~~P~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~H 467 (574)
T PLN02191 390 SLVTPATPYLGSVKYNLK-LGFNRKSPPRSYRMDYDIMNPPP-FPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIH 467 (574)
T ss_pred cCcCCCcchHHHHhhccC-cccccCCCcccccccccccCCCc-cccccccceeEEecCCCEEEEEEECCCcccCCCCCCC
Confidence 999999998887665433 33332222111 11121111100 01234577899999999999999996421 35789
Q ss_pred CcccCCCceEEEEecCCCCCC
Q 047904 427 PLHLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 427 P~HLHGh~F~Vl~~G~G~~~~ 447 (448)
|||||||+|||||+|.|.|++
T Consensus 468 P~HLHGh~F~Vlg~G~g~~~~ 488 (574)
T PLN02191 468 PWHLHGHDFWVLGYGDGKFKP 488 (574)
T ss_pred CEEeCCCCeEEEEecCCCCCc
Confidence 999999999999999999974
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=3.1e-64 Score=532.92 Aligned_cols=397 Identities=28% Similarity=0.461 Sum_probs=273.3
Q ss_pred HHHHHHHHHhcCceeceeEEEEEEEEEEe------------eCCcCCCceEEEecCCee-----------------eecc
Q 047904 17 LCSFIALCLLAEPAFGITRHYEFDIKLQN------------LNGKFPGPRIVAREGDQL-----------------HGIR 67 (448)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v-----------------HGl~ 67 (448)
+|..+++.+....+++++|+|+|+|++++ |||++|||+|++++||+| ||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~ 86 (566)
T PLN02604 7 LFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIR 86 (566)
T ss_pred HHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCC
Confidence 34444555666667899999999999987 999999999999999999 9999
Q ss_pred cCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeecCCCC-------------C---------ccc---ccCCC
Q 047904 68 RLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL-------------P---------LWE---SAGEW 122 (448)
Q Consensus 68 ~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~-------------P---------~~e---~~~d~ 122 (448)
|.+++||||++++|||+|+||++|+|+|++ .++||||||||...| | +.| +++||
T Consensus 87 ~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~d~~l~l~Dw 165 (566)
T PLN02604 87 QIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPFSYDYDRSIILTDW 165 (566)
T ss_pred CCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCccccCcceEEEeecc
Confidence 999999999999999999999999999998 799999999999777 1 223 89999
Q ss_pred ccCCHHHHHHHHHhcC-CCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceE
Q 047904 123 FNGGPKAIINQALQTG-GGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMI 201 (448)
Q Consensus 123 ~~~~~~~~~~~~~~~g-~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~ 201 (448)
++.+..+......... ....++|++||||++. +.|+.... .+........+|+. | .+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~-----------~~~~~~~~~~~~~~----~---~~~~ 225 (566)
T PLN02604 166 YHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSS-----------PYLKAGVCNATNPE----C---SPYV 225 (566)
T ss_pred ccCCHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccC-----------ccccccccccCCCC----C---CceE
Confidence 9998766544322111 1123679999999963 45542100 00000001112221 1 2368
Q ss_pred EEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCcccccc----------c---------
Q 047904 202 LKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGT----------F--------- 262 (448)
Q Consensus 202 i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~----------~--------- 262 (448)
++|++||+|||||||+++.+.+.|+||||+|+|||+||.+++|+++++|.|++|||||+. +
T Consensus 226 ~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~ 305 (566)
T PLN02604 226 LTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSR 305 (566)
T ss_pred EEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccC
Confidence 999999999999999999999999999999999999999999999999999999999961 0
Q ss_pred --CCcceEEEEEEeCCCCCCCCCCCCCCCCCcCCcCCCCCCccceeeeccccccccCCCCCCCCCCCcceEEEEEEeeCC
Q 047904 263 --DNSTVAGILEYERPPNFHHSSNSIKKLPLFKPILHALKDISFATCFTSKLRSLASTQFPANVPQNVDRRFFFTVGLGT 340 (448)
Q Consensus 263 --~~~~~~aiL~Y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~l~~~~~~ 340 (448)
+...++|||+|++... ....+...+..+.+++..........+..+. ..+..++...++++.+......
T Consensus 306 ~~~~~~~~aIL~Y~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 376 (566)
T PLN02604 306 NNTTPPGLAIFNYYPNHP-------RRSPPTVPPSGPLWNDVEPRLNQSLAIKARH--GYIHPPPLTSDRVIVLLNTQNE 376 (566)
T ss_pred CCCCcceeEEEEECCCCC-------CCCCCCCCCCCCcccccchhhcchhcccccc--cCcCCCCCCCCeEEEEeccccc
Confidence 1246799999986431 0101111122222322211100111111111 1111233456777665443322
Q ss_pred --CCCcccccceeeecCChhhhhhhhcCCCCCccCCCCCCCCCccCCCC---CC-CCCCCccCCceeEEEeecCCEEEEE
Q 047904 341 --SPCQTSVNNISFVMPTTALFQAHFIGKPNGVYTPDFPTSPLIPFNYT---GN-PPNNTMVSNGTTLVVLTFNTNVELI 414 (448)
Q Consensus 341 --~~~~~~iN~~sf~~p~~pll~~~~~~~~~g~~~~~~~~~~p~~~~~~---~~-~~~~~~~~~~~~~~~v~~g~~Vdiv 414 (448)
..++|+||+++|..|..|+|.+.+...+ +.++.+ .++..+.+. .. ..++...+.+.+++.++.|++||||
T Consensus 377 ~~~~~~w~in~~~~~~p~~p~L~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdiv 452 (566)
T PLN02604 377 VNGYRRWSVNNVSFNLPHTPYLIALKENLT-GAFDQT---PPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDII 452 (566)
T ss_pred cCCeEEEEECcccCCCCCCchhHhhhhcCC-CcccCC---CCCcccccccccccCCccccccccCceEEEccCCCeEEEE
Confidence 2357999999999888898877665332 444321 111111100 00 0112234557889999999999999
Q ss_pred EeecCCC---CCCCCCcccCCCceEEEEecCCCCCC
Q 047904 415 MQDTSIL---GTESHPLHLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 415 i~N~~~~---~~~~HP~HLHGh~F~Vl~~G~G~~~~ 447 (448)
|+|.... ....||||||||+|||||+|.|.|+.
T Consensus 453 i~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~ 488 (566)
T PLN02604 453 LQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNM 488 (566)
T ss_pred EECCccccCCCCCCCCEEecCCceEEEEecCCCCCc
Confidence 9997421 35789999999999999999999964
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.9e-63 Score=523.99 Aligned_cols=382 Identities=31% Similarity=0.533 Sum_probs=261.6
Q ss_pred eEEEEEEEEEEe------------eCCcCCCceEEEecCCee-----------------eecccCCCCCCCCCCccccCC
Q 047904 34 TRHYEFDIKLQN------------LNGKFPGPRIVAREGDQL-----------------HGIRRLRSGWADGPAYITQCP 84 (448)
Q Consensus 34 ~~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v-----------------HGl~~~~~~~~DGvp~vtq~p 84 (448)
+|+|+|+|++.+ |||++|||+|++++||+| ||++|.+++||||++++||||
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999987 999999999999999999 999999999999999999999
Q ss_pred CCCCCeeEEEEEeCCccceeEEeecCCCC-------------C---------ccc---ccCCCccCCHHHHHHHHHhcC-
Q 047904 85 IQTGQSCVYNFTIVGRRGKLWWHAHMTCL-------------P---------LWE---SAGEWFNGGPKAIINQALQTG- 138 (448)
Q Consensus 85 I~PG~~ftY~f~~~~~~GT~wYH~H~~~~-------------P---------~~e---~~~d~~~~~~~~~~~~~~~~g- 138 (448)
|+||++|+|+|++ .++||||||||...| | |+| +++||++....+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 159 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPFHYDGEFNLLLSDWWHKSIHEQEVGLSSKPM 159 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCccccceEEEEeecccCCCHHHHHhhcccCCC
Confidence 9999999999998 799999999998777 1 234 899999988765433221111
Q ss_pred CCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEEEEecc
Q 047904 139 GGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAA 218 (448)
Q Consensus 139 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~ 218 (448)
....++|++||||++. ++|..... .......+| ...+|++. ....++|++|++|||||||++
T Consensus 160 ~~~~~~d~~liNG~g~--~~~~~~~~-----~~~~~~~~~----~~~~~~~~-------~~~~~~v~~g~~~RlRliNa~ 221 (541)
T TIGR03388 160 RWIGEPQSLLINGRGQ--FNCSLAAK-----FSSTNLPQC----NLKGNEQC-------APQILHVEPGKTYRLRIASTT 221 (541)
T ss_pred cCCCCCcceEECCCCC--CCCccccc-----cCccccchh----hccCCCCC-------CceEEEECCCCEEEEEEEccc
Confidence 1124679999999963 45543210 000000011 01122221 225699999999999999999
Q ss_pred CCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCcccccc----------c-----------CCcceEEEEEEeCCC
Q 047904 219 LNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGT----------F-----------DNSTVAGILEYERPP 277 (448)
Q Consensus 219 ~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~----------~-----------~~~~~~aiL~Y~~~~ 277 (448)
+.+.+.|+||||+|+|||+||.+++|+.+++|.|++|||||+. + ....+.|||+|.++.
T Consensus 222 ~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~ 301 (541)
T TIGR03388 222 ALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNS 301 (541)
T ss_pred ccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999971 0 123478999998754
Q ss_pred CCCCCCCCCCCCC-CcCCcCCCCCCccceeeeccccccccCCCCCCCCCCCcceEEEEEEeeC--CCCCcccccceeeec
Q 047904 278 NFHHSSNSIKKLP-LFKPILHALKDISFATCFTSKLRSLASTQFPANVPQNVDRRFFFTVGLG--TSPCQTSVNNISFVM 354 (448)
Q Consensus 278 ~~~~~~~~~~~~~-~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~l~~~~~--~~~~~~~iN~~sf~~ 354 (448)
. ...+ ...|..|.+++.....+.. ++.+.... ...+|..+++++++..... ....+|+|||++|..
T Consensus 302 ~--------~~~p~~~~~~~p~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~ 370 (541)
T TIGR03388 302 P--------SRLPPTPPPVTPAWDDFDRSKAFS--LAIKAAMG-SPKPPETSDRRIVLLNTQNKINGYTKWAINNVSLTL 370 (541)
T ss_pred C--------CCCCCCCCCCCCCccccchhhccc--hhhhcccc-CCCCCCCCCcEEEEeccCcccCceEEEEECcccCCC
Confidence 2 1101 0012234443322111111 11111111 1123345677766544332 122369999999998
Q ss_pred CChhhhhhhhcCCCCCccCCCC-CCCCCccCCCCCCCCCCCccCCceeEEEeecCCEEEEEEeecCCC---CCCCCCccc
Q 047904 355 PTTALFQAHFIGKPNGVYTPDF-PTSPLIPFNYTGNPPNNTMVSNGTTLVVLTFNTNVELIMQDTSIL---GTESHPLHL 430 (448)
Q Consensus 355 p~~pll~~~~~~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~Vdivi~N~~~~---~~~~HP~HL 430 (448)
|..|+|.+.+.++. +.++.+. +...+..|.... ...+...|.|++++.++.|++|||||+|...+ ....|||||
T Consensus 371 p~~p~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HL 448 (541)
T TIGR03388 371 PHTPYLGSLKYNLL-NAFDQKPPPENYPRDYDIFK-PPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHL 448 (541)
T ss_pred CCccHHHHHhhcCC-ccccCCCCcccccccccccC-CCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEe
Confidence 98898887665332 2222110 001111111100 01112346688999999999999999996421 256899999
Q ss_pred CCCceEEEEecCCCCCC
Q 047904 431 HGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 431 HGh~F~Vl~~G~G~~~~ 447 (448)
|||+||||++|.|.|+.
T Consensus 449 HGh~F~vlg~g~g~~~~ 465 (541)
T TIGR03388 449 HGHDFWVLGYGEGKFRP 465 (541)
T ss_pred cCCceEEEeeccCCCCc
Confidence 99999999999999963
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2e-63 Score=523.98 Aligned_cols=361 Identities=25% Similarity=0.361 Sum_probs=256.6
Q ss_pred EEEEEEEEEe------------eCCcCCCceEEEecCCee-----------------eecccCCCCCCCCCCccccCCCC
Q 047904 36 HYEFDIKLQN------------LNGKFPGPRIVAREGDQL-----------------HGIRRLRSGWADGPAYITQCPIQ 86 (448)
Q Consensus 36 ~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v-----------------HGl~~~~~~~~DGvp~vtq~pI~ 86 (448)
.|+|+|++++ |||++|||+|++++||+| |||+|++++||||+|++|||||+
T Consensus 10 ~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~ 89 (538)
T TIGR03390 10 DHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIP 89 (538)
T ss_pred cEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCC
Confidence 5888998887 999999999999999999 99999999999999999999999
Q ss_pred CCCeeEEEEEeC-CccceeEEeecCCCC------------C-------ccc---ccCCCccCCHHHHHHHHHhcCC-CCC
Q 047904 87 TGQSCVYNFTIV-GRRGKLWWHAHMTCL------------P-------LWE---SAGEWFNGGPKAIINQALQTGG-GPN 142 (448)
Q Consensus 87 PG~~ftY~f~~~-~~~GT~wYH~H~~~~------------P-------~~e---~~~d~~~~~~~~~~~~~~~~g~-~~~ 142 (448)
||++|+|+|+++ +|+||||||||.+.| + |+| +++||++....++......... ...
T Consensus 90 PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~ 169 (538)
T TIGR03390 90 PGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPYKYDDERILLVSDFFSATDEEIEQGLLSTPFTWSG 169 (538)
T ss_pred CCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCCCccCcEEEEEeCCCCCCHHHHHhhhhccCCccCC
Confidence 999999999974 589999999999877 1 334 8999999988776544332221 124
Q ss_pred CCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCe
Q 047904 143 ASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDE 222 (448)
Q Consensus 143 ~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~ 222 (448)
++|.+||||+++.. .|.. ++|+.. .| ..+.++|++||+|||||||+|+.+.
T Consensus 170 ~~d~~liNG~~~~~-~~~~-----------------------~~~~~~--~~---~~~~~~v~~G~~yRlRlINa~~~~~ 220 (538)
T TIGR03390 170 ETEAVLLNGKSGNK-SFYA-----------------------QINPSG--SC---MLPVIDVEPGKTYRLRFIGATALSL 220 (538)
T ss_pred CCceEEECCccccc-cccc-----------------------cccCCC--CC---cceEEEECCCCEEEEEEEccCCceE
Confidence 57899999996422 1110 112211 12 2478999999999999999999999
Q ss_pred EEEEEcCCe-eEEEEecCceeceeEeeeEEecCCcccccc--c-----------C-------------CcceEEEEEEeC
Q 047904 223 LFFSIANHT-LKVVEADVVYVKPFETETLLIAPGQTTNGT--F-----------D-------------NSTVAGILEYER 275 (448)
Q Consensus 223 ~~~~idgh~-~~Vva~DG~~v~P~~~~~i~i~~GeRydv~--~-----------~-------------~~~~~aiL~Y~~ 275 (448)
+.|+|+||+ |+|||+||.+++|+.+++|.|++|||||+. . . ...++|||+|.+
T Consensus 221 ~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~ 300 (538)
T TIGR03390 221 ISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRS 300 (538)
T ss_pred EEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCC
Confidence 999999999 999999999999999999999999999971 0 1 124689999976
Q ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCC-ccceeeeccccccccCCCCCC-CCCCCcceEEEEEEeeCC----CCCcccccc
Q 047904 276 PPNFHHSSNSIKKLPLFKPILHALKD-ISFATCFTSKLRSLASTQFPA-NVPQNVDRRFFFTVGLGT----SPCQTSVNN 349 (448)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~p~~p~~~~-~~~~~~~~~~l~~l~~~~~p~-~~p~~~d~~~~l~~~~~~----~~~~~~iN~ 349 (448)
+.. ...+.. |..+.... ..+..+....|+++.....+. +.+..+++++.+.+++.. ...+|++||
T Consensus 301 ~~~--------~~~~~~-p~~~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~ 371 (538)
T TIGR03390 301 DKA--------SKLPSV-PETPPLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNG 371 (538)
T ss_pred CCC--------CCCCCC-CCCCCCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECC
Confidence 532 111111 12222111 011112223455553211111 123457888888877642 224799999
Q ss_pred eeeec--CChhhhhhhhcCCCCCccCCCCCCCCCccCCCCCCCCCCCccCCceeEEEeecCCEEEEEEeecCCC-----C
Q 047904 350 ISFVM--PTTALFQAHFIGKPNGVYTPDFPTSPLIPFNYTGNPPNNTMVSNGTTLVVLTFNTNVELIMQDTSIL-----G 422 (448)
Q Consensus 350 ~sf~~--p~~pll~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~Vdivi~N~~~~-----~ 422 (448)
++|.. |..|+|...+.+ + . +..++ |+... ........++++.++.|++|||||+|.... .
T Consensus 372 ~s~~~~~~~~P~L~~~~~~---~-~----~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~ 438 (538)
T TIGR03390 372 LSWTESVRQTPYLVDIYEN---G-L----PATPN--YTAAL---ANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGG 438 (538)
T ss_pred cccCCCCCCCchHHHHhcC---C-C----CcCCC--ccccc---ccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCC
Confidence 99986 678888765542 1 0 01111 11000 000122356688999999999999996411 2
Q ss_pred CCCCCcccCCCceEEEEecCCCCCC
Q 047904 423 TESHPLHLHGFNFFVIGQGFGNFNP 447 (448)
Q Consensus 423 ~~~HP~HLHGh~F~Vl~~G~G~~~~ 447 (448)
...||||||||+|||||+|.|.|++
T Consensus 439 ~~~HP~HlHGh~F~vlg~G~G~~~~ 463 (538)
T TIGR03390 439 VDTHPFHAHGRHFYDIGGGDGEYNA 463 (538)
T ss_pred CCCCCeeecCCcEEEEcccccccCC
Confidence 4789999999999999999999974
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.4e-50 Score=426.70 Aligned_cols=214 Identities=25% Similarity=0.360 Sum_probs=159.2
Q ss_pred EEEEEEEEEEe------------eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCccccCCCC
Q 047904 35 RHYEFDIKLQN------------LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYITQCPIQ 86 (448)
Q Consensus 35 ~~~~l~i~~~~------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vtq~pI~ 86 (448)
++|+|+|++.+ |||++|||+|++++||+| ||++++. +|||||++|||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~--~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPF--QMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCc--cccCCCcccccccC
Confidence 79999999987 999999999999999999 9999875 59999999999999
Q ss_pred CCCeeEEEEEeCCccceeEEeecCCCC------------C--------ccc---ccCCCccCCHHHHHHHHHhcCCC-CC
Q 047904 87 TGQSCVYNFTIVGRRGKLWWHAHMTCL------------P--------LWE---SAGEWFNGGPKAIINQALQTGGG-PN 142 (448)
Q Consensus 87 PG~~ftY~f~~~~~~GT~wYH~H~~~~------------P--------~~e---~~~d~~~~~~~~~~~~~~~~g~~-~~ 142 (448)
||++|+|+|++ .++||||||||...| | |+| +++||++.+..+++..+...... ..
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~ 202 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPVRADREHVVLLSDWTDLDPAALFRKLKVMAGHDNY 202 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccCCCCceEEEEeeecccCCHHHHHHhhhcccccccc
Confidence 99999999998 789999999998777 2 334 89999998887776554321110 00
Q ss_pred C----Cc---cEEecCCCCCCCCCCcccccccccchhccccccccc--ceeecccccccccCcccceEEEEeCCcEEEEE
Q 047904 143 A----SD---AFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALV--DVILSNQEYIGEMNAGRDMILKVKPGKTYLLR 213 (448)
Q Consensus 143 ~----~d---~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlR 213 (448)
+ .+ .+-.+|+.. ..... .....+.+...+.....+ ..+++||+... ..+++.+++|++||||
T Consensus 203 ~~~~~~~~~~~~~~~G~~~-~~~~~---~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~-----~~~~~~v~~G~rvRLR 273 (587)
T TIGR01480 203 YKRTVADFFRDVRNDGLKQ-TLADR---KMWGQMRMTPTDLADVNGSTYTYLMNGTTPA-----GNWTGLFRPGEKVRLR 273 (587)
T ss_pred cccchhhhhhhhccccccc-ccccc---ccccccccCCcccccccCccceEEEcCccCC-----CCceEEECCCCEEEEE
Confidence 0 00 011122110 00000 000001111111101111 13789998632 2367999999999999
Q ss_pred EEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCccccc
Q 047904 214 IINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNG 260 (448)
Q Consensus 214 liNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv 260 (448)
|||+|+.+.|.|+|+||+|+||++||.+|+|+.++.|.|++|||||+
T Consensus 274 ~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDV 320 (587)
T TIGR01480 274 FINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDV 320 (587)
T ss_pred EEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEE
Confidence 99999999999999999999999999999999999999999999997
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1e-43 Score=371.75 Aligned_cols=203 Identities=19% Similarity=0.255 Sum_probs=139.7
Q ss_pred eEEEEEEEEEEe-------------eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCccccCC
Q 047904 34 TRHYEFDIKLQN-------------LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYITQCP 84 (448)
Q Consensus 34 ~~~~~l~i~~~~-------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vtq~p 84 (448)
...|+|++++.. |||++|||+|++++||+| ||+++++. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 346888888776 999999999999999999 99999875 99987 899
Q ss_pred CCCCCeeEEEEEeCCccceeEEeecCCCCC----cccccCCCccCCHHHHHHHHH-hcCCCCCCCcc-EEecCCCCCCCC
Q 047904 85 IQTGQSCVYNFTIVGRRGKLWWHAHMTCLP----LWESAGEWFNGGPKAIINQAL-QTGGGPNASDA-FTINGLSGSLYN 158 (448)
Q Consensus 85 I~PG~~ftY~f~~~~~~GT~wYH~H~~~~P----~~e~~~d~~~~~~~~~~~~~~-~~g~~~~~~d~-~liNG~~~~~~~ 158 (448)
|+||++|+|+|++++++||||||+|.++.. .+.+.+-+..++..+...... ..+. .|. ++|..+ .++
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~----~d~~lvlqD~---~~~ 192 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGV----DDIPVILQDK---RFS 192 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCC----ceeeEEEEee---eeC
Confidence 999999999999855689999999986541 111222222221111000000 0010 011 122111 000
Q ss_pred CCcccccccccchh-cccccccccceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEE-cCCeeEEEE
Q 047904 159 RSAKEFQVEDMIFE-EKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSI-ANHTLKVVE 236 (448)
Q Consensus 159 ~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~i-dgh~~~Vva 236 (448)
.... . .+... ........+|.++|||+.. +.+.+ ++++|||||||+|+.+.++|++ |+|+|+|||
T Consensus 193 ~~g~---~-~~~~~~~~~~~g~~gd~~lVNG~~~--------p~~~v-~~~~~RlRliNas~~r~~~l~~~dg~~~~vIa 259 (523)
T PRK10965 193 ADGQ---I-DYQLDVMTAAVGWFGDTLLTNGAIY--------PQHAA-PRGWLRLRLLNGCNARSLNLATSDGRPLYVIA 259 (523)
T ss_pred CCCc---e-eccccccccccCccCCeEEECCccc--------ceeec-CCCEEEEEEEeccCCceEEEEEcCCceEEEEE
Confidence 0000 0 00000 0001123578889999853 56676 4679999999999999999998 899999999
Q ss_pred ecCcee-ceeEeeeEEecCCcccccc
Q 047904 237 ADVVYV-KPFETETLLIAPGQTTNGT 261 (448)
Q Consensus 237 ~DG~~v-~P~~~~~i~i~~GeRydv~ 261 (448)
+||+++ +|..+++|.|+||||||+.
T Consensus 260 ~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 260 SDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred eCCCcccCccEeCeEEECccceEEEE
Confidence 999997 7999999999999999984
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.2e-42 Score=360.48 Aligned_cols=199 Identities=20% Similarity=0.288 Sum_probs=136.7
Q ss_pred EEEEEEEEe-------------eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCccccCCCCC
Q 047904 37 YEFDIKLQN-------------LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYITQCPIQT 87 (448)
Q Consensus 37 ~~l~i~~~~-------------~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vtq~pI~P 87 (448)
|+|+++... |||++|||+||+++||+| ||+++++. .+||++ ++|+|
T Consensus 48 ~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~P 122 (471)
T PRK10883 48 LFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMSP 122 (471)
T ss_pred EEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCCC
Confidence 677666654 999999999999999999 99999876 577765 78999
Q ss_pred CCeeEEEEEeCCccceeEEeecCCCCC----cccccCCCccCCHHHHHHHH-HhcCCCCCCCcc-EEecCCCCCCCCCCc
Q 047904 88 GQSCVYNFTIVGRRGKLWWHAHMTCLP----LWESAGEWFNGGPKAIINQA-LQTGGGPNASDA-FTINGLSGSLYNRSA 161 (448)
Q Consensus 88 G~~ftY~f~~~~~~GT~wYH~H~~~~P----~~e~~~d~~~~~~~~~~~~~-~~~g~~~~~~d~-~liNG~~~~~~~~~~ 161 (448)
|++|+|+|++.+++||||||+|.++.- .+.+.+-+..++..+..... ...+. .|. ++|.... ++...
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~----~d~~l~l~D~~---~~~~g 195 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGV----DDFPVIIQDKR---LDNFG 195 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCC----cceeEEeeeee---eccCC
Confidence 999999999866799999999988751 11122222222111000000 00010 011 1222110 00000
Q ss_pred ccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEE-cCCeeEEEEecCc
Q 047904 162 KEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSI-ANHTLKVVEADVV 240 (448)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~i-dgh~~~Vva~DG~ 240 (448)
...+.....+...+|++++||+.. +.++|++ ++|||||||+|+.+.+.|+| |+|+|+|||+||+
T Consensus 196 ------~~~~~~~~~~g~~gd~~lvNG~~~--------p~~~v~~-~~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg 260 (471)
T PRK10883 196 ------TPEYNEPGSGGFVGDTLLVNGVQS--------PYVEVSR-GWVRLRLLNASNARRYQLQMSDGRPLHVIAGDQG 260 (471)
T ss_pred ------CccccccccCCccCCeeEECCccC--------CeEEecC-CEEEEEEEEccCCceEEEEEcCCCeEEEEEeCCC
Confidence 000000011234678889998853 6789987 58999999999999999999 8999999999977
Q ss_pred ee-ceeEeeeEEecCCccccccc
Q 047904 241 YV-KPFETETLLIAPGQTTNGTF 262 (448)
Q Consensus 241 ~v-~P~~~~~i~i~~GeRydv~~ 262 (448)
++ +|+.++++.|+||||||+..
T Consensus 261 ~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 261 FLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred cccCCcEeCeEEECCCCeEEEEE
Confidence 76 79999999999999999843
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.9e-34 Score=294.79 Aligned_cols=188 Identities=25% Similarity=0.390 Sum_probs=132.8
Q ss_pred eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 46 LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 46 ~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
+||++|||+|++++||+| ||+.+++ .|||++..+|+++.||++++|.|+. .++||||||+|
T Consensus 57 ~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~--~~dG~~~~~~~~~~~~~~~~y~f~~-~~~gT~wyh~H 133 (451)
T COG2132 57 YNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPG--EMDGVPPLTQIPPGPGETPTYTFTQ-DVPGTYWYHPH 133 (451)
T ss_pred ecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCc--cccCCCcccccCCCCCCcEEEeecC-CCCcceEeccC
Confidence 999999999999999999 9999884 5999999999999999999999997 67889999999
Q ss_pred CCCCCcccccCCCccCCHHHHHHHHHhcCCCCCCCccEEecCCCCCCCCCCcccccccccchh-cccccccccceeeccc
Q 047904 110 MTCLPLWESAGEWFNGGPKAIINQALQTGGGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFE-EKNEGRALVDVILSNQ 188 (448)
Q Consensus 110 ~~~~P~~e~~~d~~~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ng 188 (448)
.++|-++-+.+-+..++..+. ..+ ..|..++.-.. .+++..... .. ....++..+|..++||
T Consensus 134 ~~~Q~~~Gl~G~~II~~~~~~-----~~~----~d~~~~i~~~~--~~~~~~~~~------~~~~~~~~~~~g~~~~vnG 196 (451)
T COG2132 134 THGQVYDGLAGALIIEDENSE-----PLG----VDDEPVILQDD--WLDEDGTDL------YQEGPAMGGFPGDTLLVNG 196 (451)
T ss_pred CCchhhcccceeEEEeCCCCC-----CCC----CCceEEEEEee--eecCCCCcc------ccCCccccCCCCCeEEECC
Confidence 998721112222211111000 000 01111110000 000100000 00 1222445677788888
Q ss_pred ccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCccccccc
Q 047904 189 EYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGTF 262 (448)
Q Consensus 189 ~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~~ 262 (448)
+. .++...++++||||++|++..+.+.+++.++.|+||++||.+++|+.++.+.|+||||||+..
T Consensus 197 ~~---------~p~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v 261 (451)
T COG2132 197 AI---------LPFKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLV 261 (451)
T ss_pred Cc---------cceeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEE
Confidence 53 345555667799999999988889999999999999999999999999999999999999843
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=7.8e-35 Score=287.19 Aligned_cols=186 Identities=18% Similarity=0.201 Sum_probs=146.2
Q ss_pred eeceeEEEEEEEEEEe-------------eCCcCCCceEEEecCCee-------------eecccCCCCCCCCCCccccC
Q 047904 30 AFGITRHYEFDIKLQN-------------LNGKFPGPRIVAREGDQL-------------HGIRRLRSGWADGPAYITQC 83 (448)
Q Consensus 30 ~~~~~~~~~l~i~~~~-------------~NG~~PGP~I~v~~Gd~v-------------HGl~~~~~~~~DGvp~vtq~ 83 (448)
+..++++|+|++++.+ |||++|||+|++++||+| |+++..+..++||+++++|
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~dg~~~~~~- 101 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAATGALGGAALTQ- 101 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCCccCCCCccee-
Confidence 3568899999999975 999999999999999999 7777776667999999888
Q ss_pred CCCCCCeeEEEEEeCCccceeEEeecCCC----C------------C-------ccc---ccCCCccCCHHHHHHHHHhc
Q 047904 84 PIQTGQSCVYNFTIVGRRGKLWWHAHMTC----L------------P-------LWE---SAGEWFNGGPKAIINQALQT 137 (448)
Q Consensus 84 pI~PG~~ftY~f~~~~~~GT~wYH~H~~~----~------------P-------~~e---~~~d~~~~~~~~~~~~~~~~ 137 (448)
|+||++|+|+|++ .++||||||||.++ + | |+| +++||+..........+...
T Consensus 102 -I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~ 179 (311)
T TIGR02376 102 -VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLPEYDKEYYIGESDLYTPKDEGEGGAYEDD 179 (311)
T ss_pred -ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCcCcceeEEEeeeeEeccccccccccccch
Confidence 9999999999997 78999999999755 2 1 344 67888875432210000000
Q ss_pred -C-CCCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccccCcccceEEEEeCCcEEEEEEE
Q 047904 138 -G-GGPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRII 215 (448)
Q Consensus 138 -g-~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRli 215 (448)
+ .....++.++|||+.+++ .+.+++++|+++|||||
T Consensus 180 ~~~~~~~~~~~~~iNG~~~~~------------------------------------------~~~~~v~~G~~~RlRii 217 (311)
T TIGR02376 180 VAAMRTLTPTHVVFNGAVGAL------------------------------------------TGDNALTAGVGERVLFV 217 (311)
T ss_pred HHHHhcCCCCEEEECCccCCC------------------------------------------CCCcccccCCcEEEEEE
Confidence 0 011245677777764311 03468999999999999
Q ss_pred eccCCCeEEEEEcCCeeEEEEecCceeceeE--eeeEEecCCccccc
Q 047904 216 NAALNDELFFSIANHTLKVVEADVVYVKPFE--TETLLIAPGQTTNG 260 (448)
Q Consensus 216 Na~~~~~~~~~idgh~~~Vva~DG~~v~P~~--~~~i~i~~GeRydv 260 (448)
|++..+.+.|+++||.+++|+.||.++.|.. ++++.|+||||+|+
T Consensus 218 Na~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv 264 (311)
T TIGR02376 218 HSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAA 264 (311)
T ss_pred cCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEE
Confidence 9999899999999999999999999998644 89999999999997
No 18
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.89 E-value=1.7e-23 Score=187.52 Aligned_cols=111 Identities=33% Similarity=0.647 Sum_probs=89.2
Q ss_pred ccCCCccCCHHHHHHHHHhcCC----CCCCCccEEecCCCCCCCCCCcccccccccchhcccccccccceeecccccccc
Q 047904 118 SAGEWFNGGPKAIINQALQTGG----GPNASDAFTINGLSGSLYNRSAKEFQVEDMIFEEKNEGRALVDVILSNQEYIGE 193 (448)
Q Consensus 118 ~~~d~~~~~~~~~~~~~~~~g~----~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ng~~~~~ 193 (448)
+++||++++..+++......+. .+.++|+++|||++. ++|.....
T Consensus 6 ~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~----------------------------- 54 (159)
T PF00394_consen 6 MLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADY----------------------------- 54 (159)
T ss_dssp EEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGS-----------------------------
T ss_pred EEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccc-----------------------------
Confidence 7899999988877665544322 267899999999863 44442110
Q ss_pred cCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCccccc
Q 047904 194 MNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNG 260 (448)
Q Consensus 194 ~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv 260 (448)
+....+++++++|++|||||||+++.+.+.|+|+||+|+|||+||.+++|..+++|.|++|||||+
T Consensus 55 -~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dv 120 (159)
T PF00394_consen 55 -TGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDV 120 (159)
T ss_dssp -TTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEE
T ss_pred -cccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEE
Confidence 011348999999999999999999999999999999999999999999999999999999999997
No 19
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.88 E-value=2e-23 Score=176.95 Aligned_cols=67 Identities=46% Similarity=0.953 Sum_probs=64.4
Q ss_pred eCCcCCCceEEEecCCee----------------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 46 LNGKFPGPRIVAREGDQL----------------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 46 ~NG~~PGP~I~v~~Gd~v----------------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
|||++|||+|+|++||+| ||++++..+||||+++++||+|+||++|+|+|++++++||||||||
T Consensus 19 ~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H 98 (117)
T PF07732_consen 19 YNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSH 98 (117)
T ss_dssp ETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEEC
T ss_pred ECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeC
Confidence 999999999999999999 9999999999999999999999999999999999555999999999
Q ss_pred CCC
Q 047904 110 MTC 112 (448)
Q Consensus 110 ~~~ 112 (448)
.++
T Consensus 99 ~~~ 101 (117)
T PF07732_consen 99 VHG 101 (117)
T ss_dssp STT
T ss_pred CCc
Confidence 886
No 20
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.32 E-value=1.9e-12 Score=114.02 Aligned_cols=66 Identities=17% Similarity=0.386 Sum_probs=50.5
Q ss_pred eCCcCCCceEEEecCCee------------ee--cccCCCCC-----CCCCCccccCCCCCC---C-e--eEEEEEeCCc
Q 047904 46 LNGKFPGPRIVAREGDQL------------HG--IRRLRSGW-----ADGPAYITQCPIQTG---Q-S--CVYNFTIVGR 100 (448)
Q Consensus 46 ~NG~~PGP~I~v~~Gd~v------------HG--l~~~~~~~-----~DGvp~vtq~pI~PG---~-~--ftY~f~~~~~ 100 (448)
++| .++|+|++++||+| || |++.+.+| |||++.++||+|.|+ + . .++.|++ .+
T Consensus 46 ~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f-~~ 123 (148)
T TIGR03095 46 IHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHF-ST 123 (148)
T ss_pred ecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEEC-CC
Confidence 777 56999999999999 55 44455555 899999999999884 2 1 2344444 47
Q ss_pred cceeEEeecCCCC
Q 047904 101 RGKLWWHAHMTCL 113 (448)
Q Consensus 101 ~GT~wYH~H~~~~ 113 (448)
+||||||||..++
T Consensus 124 aGtywyhC~~pgH 136 (148)
T TIGR03095 124 AGTYWYLCTYPGH 136 (148)
T ss_pred CeEEEEEcCChhH
Confidence 9999999998765
No 21
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.12 E-value=2.2e-10 Score=97.97 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHhcCceeceeEEEEEEEE--EEe----------------eCCcCCCceEEEecCCee-----------e
Q 047904 14 KGVLCSFIALCLLAEPAFGITRHYEFDIK--LQN----------------LNGKFPGPRIVAREGDQL-----------H 64 (448)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~--~~~----------------~NG~~PGP~I~v~~Gd~v-----------H 64 (448)
|..+.++.+.+|++..+.+..|+|+++|. +.+ +|+++..+.|+|++||+| |
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H 83 (135)
T TIGR03096 4 KAMFAGFALGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISE 83 (135)
T ss_pred HHHhHHHHHHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCcc
Confidence 55677888889999999999999999998 222 799999999999999999 7
Q ss_pred ecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeecCCCC
Q 047904 65 GIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL 113 (448)
Q Consensus 65 Gl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~ 113 (448)
|..... .| + +.-|+||++.+|+|++ .++|+|||||-.+..
T Consensus 84 ~f~i~~----~g---i-s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~ 123 (135)
T TIGR03096 84 GFSIDA----YG---I-SEVIKAGETKTISFKA-DKAGAFTIWCQLHPK 123 (135)
T ss_pred ceEECC----CC---c-ceEECCCCeEEEEEEC-CCCEEEEEeCCCCCh
Confidence 766443 12 2 3568999999999997 899999999987754
No 22
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.84 E-value=2.8e-09 Score=92.89 Aligned_cols=48 Identities=33% Similarity=0.655 Sum_probs=42.7
Q ss_pred cCCceeEEEeecCCEEEEEEeecCCCCCCCCCcccCCCceEEEEecCCCCC
Q 047904 396 VSNGTTLVVLTFNTNVELIMQDTSILGTESHPLHLHGFNFFVIGQGFGNFN 446 (448)
Q Consensus 396 ~~~~~~~~~v~~g~~Vdivi~N~~~~~~~~HP~HLHGh~F~Vl~~G~G~~~ 446 (448)
.+.+..++.++.|++|||+|+|.+ ...||||||||+|+|++++.+.++
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~ 76 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWN 76 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEEST
T ss_pred cCCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccc
Confidence 456788999999999999999966 469999999999999999988763
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.60 E-value=5.3e-08 Score=103.97 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=57.3
Q ss_pred eeEEEEEEEEEE------eeCCcCCCc--eEEEecCCee----------------eecccCCCCCCCCCC---ccccCCC
Q 047904 33 ITRHYEFDIKLQ------NLNGKFPGP--RIVAREGDQL----------------HGIRRLRSGWADGPA---YITQCPI 85 (448)
Q Consensus 33 ~~~~~~l~i~~~------~~NG~~PGP--~I~v~~Gd~v----------------HGl~~~~~~~~DGvp---~vtq~pI 85 (448)
..|++++.++-. +|||+.+++ .|++++||+| ||+..... ..||.. ..| ..|
T Consensus 471 p~r~~~~~L~g~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~dT-v~V 548 (587)
T TIGR01480 471 PGREIELHLTGNMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRKHT-VDV 548 (587)
T ss_pred CCceEEEEEcCCCceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccCCc-eee
Confidence 456666666532 299998874 7999999999 77765432 135632 223 789
Q ss_pred CCCCeeEEEEEeCCccceeEEeecCC
Q 047904 86 QTGQSCVYNFTIVGRRGKLWWHAHMT 111 (448)
Q Consensus 86 ~PG~~ftY~f~~~~~~GT~wYH~H~~ 111 (448)
+||++++|+|++ +++|+||||||..
T Consensus 549 ~Pg~t~~~~f~a-d~pG~w~~HCH~l 573 (587)
T TIGR01480 549 PPGGKRSFRVTA-DALGRWAYHCHML 573 (587)
T ss_pred CCCCEEEEEEEC-CCCeEEEEcCCCH
Confidence 999999999997 8999999999964
No 24
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=98.11 E-value=5.8e-05 Score=74.98 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=58.2
Q ss_pred ccceeecccccccccCcccceEEEEeCCcEEEEEEEeccC-CCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCccc
Q 047904 180 LVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAAL-NDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTT 258 (448)
Q Consensus 180 ~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~-~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRy 258 (448)
..+++..||+..+ +.|+++.|+++++++.|... ...+.++++++. +.||... ...|.|||++
T Consensus 46 ~~~~~~~nG~~pG-------P~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ 108 (311)
T TIGR02376 46 TYQAMTFDGSVPG-------PLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETA 108 (311)
T ss_pred EEEEEEECCcccC-------ceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeE
Confidence 3456777887543 88999999999999999863 256889998874 4677432 2238999999
Q ss_pred ccccCCcceEEEEEEeCC
Q 047904 259 NGTFDNSTVAGILEYERP 276 (448)
Q Consensus 259 dv~~~~~~~~aiL~Y~~~ 276 (448)
..+|... ..|..-|...
T Consensus 109 ty~F~~~-~~Gty~YH~H 125 (311)
T TIGR02376 109 TLRFKAT-RPGAFVYHCA 125 (311)
T ss_pred EEEEEcC-CCEEEEEEcC
Confidence 9988643 4677777755
No 25
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=97.95 E-value=3.3e-05 Score=67.13 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=60.9
Q ss_pred eEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCcee-----------ceeEeeeEEecCCcccccccCC-cce
Q 047904 200 MILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYV-----------KPFETETLLIAPGQTTNGTFDN-STV 267 (448)
Q Consensus 200 ~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v-----------~P~~~~~i~i~~GeRydv~~~~-~~~ 267 (448)
..+.++.|++++|+|+|.+. ..+.||++||.|+|++.++... .|...|++.|.+|++..+++.. ..+
T Consensus 34 ~~~~~~~g~~v~~~l~N~~~-~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G 112 (138)
T PF07731_consen 34 PVIEVKNGDVVEIVLQNNGS-MPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPG 112 (138)
T ss_dssp SEEEEETTSEEEEEEEECTT-SSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETSTE
T ss_pred ceEEEeCCCEEEEEEECCCC-CccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecce
Confidence 78999999999999999875 4899999999999999999995 5789999999999999886532 233
Q ss_pred EEEEEE
Q 047904 268 AGILEY 273 (448)
Q Consensus 268 ~aiL~Y 273 (448)
.-++..
T Consensus 113 ~w~~HC 118 (138)
T PF07731_consen 113 PWLFHC 118 (138)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 334444
No 26
>PRK10965 multicopper oxidase; Provisional
Probab=97.61 E-value=0.0001 Score=78.21 Aligned_cols=72 Identities=10% Similarity=-0.042 Sum_probs=58.8
Q ss_pred eecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceece---eEeeeEEecCCccccc
Q 047904 184 ILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKP---FETETLLIAPGQTTNG 260 (448)
Q Consensus 184 ~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P---~~~~~i~i~~GeRydv 260 (448)
+++||+.... ..+.++++.|++.+|+|+|.+....+.|||||+.|+|++.||.++.+ .+.|+|.|.+ +++.+
T Consensus 414 ~~ING~~~~~----~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i 488 (523)
T PRK10965 414 NKINGKAFDM----NKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEV 488 (523)
T ss_pred ccCCCeECCC----CCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEE
Confidence 4799986431 23557899999999999999966679999999999999999998753 5689999977 66654
No 27
>PLN02835 oxidoreductase
Probab=97.56 E-value=0.00083 Score=71.63 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=61.8
Q ss_pred ccceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEE-EEecCceeceeEeeeEEecCCccc
Q 047904 180 LVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKV-VEADVVYVKPFETETLLIAPGQTT 258 (448)
Q Consensus 180 ~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~V-va~DG~~v~P~~~~~i~i~~GeRy 258 (448)
.-.++++||+..+ ++|+++.|+++++++.|-.. ....+|.||-.+.- -..||.+. . .-.|.||+.+
T Consensus 47 ~~~~~~~NG~~PG-------P~I~~~~GD~v~v~v~N~L~-~~ttiHWHGl~~~~~~~~DGv~~-t----Q~pI~PG~sf 113 (539)
T PLN02835 47 PQQVILINGQFPG-------PRLDVVTNDNIILNLINKLD-QPFLLTWNGIKQRKNSWQDGVLG-T----NCPIPPNSNY 113 (539)
T ss_pred EEEEEEECCcCCC-------CCEEEECCCEEEEEEEeCCC-CCCcEEeCCcccCCCCCCCCCcc-C----cCCCCCCCcE
Confidence 3456888998754 89999999999999999985 44566666654332 24699653 1 2478999999
Q ss_pred ccccCCcceEEEEEEeCC
Q 047904 259 NGTFDNSTVAGILEYERP 276 (448)
Q Consensus 259 dv~~~~~~~~aiL~Y~~~ 276 (448)
.-+|......|..=|...
T Consensus 114 ~Y~F~~~~q~GT~WYHsH 131 (539)
T PLN02835 114 TYKFQTKDQIGTFTYFPS 131 (539)
T ss_pred EEEEEECCCCEeEEEEeC
Confidence 988865446788888865
No 28
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=97.46 E-value=0.00094 Score=71.45 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=58.5
Q ss_pred ceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEE-EecCceeceeEeeeEEecCCccccc
Q 047904 182 DVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVV-EADVVYVKPFETETLLIAPGQTTNG 260 (448)
Q Consensus 182 ~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vv-a~DG~~v~P~~~~~i~i~~GeRydv 260 (448)
.++++||+..+ ++|+++.|+++++++.|--.. ...+|.||-...-- ..||.+- +..-.|.||+++..
T Consensus 23 ~~~~~NG~~PG-------P~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl~q~~~~~~DGv~~----vTq~pI~PG~s~~Y 90 (539)
T TIGR03389 23 SILTVNGKFPG-------PTLYAREGDTVIVNVTNNVQY-NVTIHWHGVRQLRNGWADGPAY----ITQCPIQPGQSYVY 90 (539)
T ss_pred EEEEECCcccC-------CEEEEEcCCEEEEEEEeCCCC-CeeEecCCCCCCCCCCCCCCcc----cccCCcCCCCeEEE
Confidence 45777777643 899999999999999999864 45566665432211 2588652 22235789999988
Q ss_pred ccCCcceEEEEEEeCCC
Q 047904 261 TFDNSTVAGILEYERPP 277 (448)
Q Consensus 261 ~~~~~~~~aiL~Y~~~~ 277 (448)
+|+.....|..-|....
T Consensus 91 ~f~~~~~~GT~WYHsH~ 107 (539)
T TIGR03389 91 NFTITGQRGTLWWHAHI 107 (539)
T ss_pred EEEecCCCeeEEEecCc
Confidence 87754567788888663
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=97.32 E-value=0.0024 Score=68.27 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=60.7
Q ss_pred ccceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEE-EecCceeceeEeeeEEecCCccc
Q 047904 180 LVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVV-EADVVYVKPFETETLLIAPGQTT 258 (448)
Q Consensus 180 ~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vv-a~DG~~v~P~~~~~i~i~~GeRy 258 (448)
.-.++++||+..+ |.|+++.|+++++++.|... ....+|.||-.+.-- ..||.+. ..-.|.||+.+
T Consensus 45 ~r~~~~iNGq~PG-------P~I~~~~GD~v~V~v~N~l~-~~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf 111 (552)
T PLN02354 45 PQQVILINGQFPG-------PNINSTSNNNIVINVFNNLD-EPFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNF 111 (552)
T ss_pred EEEEEEECCCCcC-------CcEEEeCCCEEEEEEEECCC-CCcccccccccCCCCcccCCCcC-----CcCCCCCCCcE
Confidence 3457889998754 99999999999999999984 344555555433322 4799653 23478999999
Q ss_pred ccccCCcceEEEEEEeCC
Q 047904 259 NGTFDNSTVAGILEYERP 276 (448)
Q Consensus 259 dv~~~~~~~~aiL~Y~~~ 276 (448)
.-+|......|..-|...
T Consensus 112 ~Y~F~~~~q~GT~WYHsH 129 (552)
T PLN02354 112 TYHFQPKDQIGSYFYYPS 129 (552)
T ss_pred EEEEEeCCCCcceEEecC
Confidence 988875445778888765
No 30
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=97.25 E-value=0.0036 Score=67.02 Aligned_cols=83 Identities=19% Similarity=0.145 Sum_probs=57.5
Q ss_pred ceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEE-EecCceeceeEeeeEEecCCccccc
Q 047904 182 DVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVV-EADVVYVKPFETETLLIAPGQTTNG 260 (448)
Q Consensus 182 ~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vv-a~DG~~v~P~~~~~i~i~~GeRydv 260 (448)
.++++||+..+ ++|+++.|+++++++.|........||.||....-- ..||.+-- ..-.|.||+++..
T Consensus 21 ~~~~~Ng~~pG-------P~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~v----tq~~I~PG~s~~y 89 (541)
T TIGR03388 21 LVIGINGQFPG-------PTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGV----TQCAINPGETFIY 89 (541)
T ss_pred eEEEECCcCCC-------CeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCcc----ccCCcCCCCEEEE
Confidence 35677777643 899999999999999999755667888888753221 25885421 2346789999887
Q ss_pred ccCCcceEEEEEEeCC
Q 047904 261 TFDNSTVAGILEYERP 276 (448)
Q Consensus 261 ~~~~~~~~aiL~Y~~~ 276 (448)
+|.. ...|..-|...
T Consensus 90 ~f~~-~~~Gt~wyH~H 104 (541)
T TIGR03388 90 NFVV-DRPGTYFYHGH 104 (541)
T ss_pred EEEc-CCCEEEEEEec
Confidence 6653 23556666644
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=97.22 E-value=0.0027 Score=67.70 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=60.6
Q ss_pred cceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEE-EecCceeceeEeeeEEecCCcccc
Q 047904 181 VDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVV-EADVVYVKPFETETLLIAPGQTTN 259 (448)
Q Consensus 181 ~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vv-a~DG~~v~P~~~~~i~i~~GeRyd 259 (448)
-.++++||+..+ +.|+++.|+++++++.|-.. ....+|.||..+.-- ..||.+- . .-.|.||+++.
T Consensus 45 ~~~~~vNG~~PG-------P~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~~~~~~~~DGv~g-t----QcpI~PG~sft 111 (545)
T PLN02168 45 KQVIVINDMFPG-------PLLNATANDVINVNIFNNLT-EPFLMTWNGLQLRKNSWQDGVRG-T----NCPILPGTNWT 111 (545)
T ss_pred EEEEEECCcCCC-------CcEEEECCCEEEEEEEeCCC-CCccEeeCCccCCCCCCcCCCCC-C----cCCCCCCCcEE
Confidence 446788988754 89999999999999999985 445666666443222 2599653 1 24789999999
Q ss_pred cccCCcceEEEEEEeCC
Q 047904 260 GTFDNSTVAGILEYERP 276 (448)
Q Consensus 260 v~~~~~~~~aiL~Y~~~ 276 (448)
-+|+.....|..-|...
T Consensus 112 Y~F~~~~q~GT~WYHsH 128 (545)
T PLN02168 112 YRFQVKDQIGSYFYFPS 128 (545)
T ss_pred EEEEeCCCCceEEEecC
Confidence 88875445788888865
No 32
>PLN02991 oxidoreductase
Probab=97.17 E-value=0.0025 Score=67.85 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=62.7
Q ss_pred ccceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeE-EEEecCceeceeEeeeEEecCCccc
Q 047904 180 LVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLK-VVEADVVYVKPFETETLLIAPGQTT 258 (448)
Q Consensus 180 ~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~-Vva~DG~~v~P~~~~~i~i~~GeRy 258 (448)
.-.++++||+..+ +.|+++.|+++++++.|-.. ....+|.||-.+. --..||.+. + .-.|.||+++
T Consensus 46 ~r~~~~vNG~~PG-------P~I~~~~GD~v~V~V~N~L~-~~ttiHWHGi~q~~~~~~DGv~~----t-QcpI~PG~sf 112 (543)
T PLN02991 46 AQQGILINGKFPG-------PDIISVTNDNLIINVFNHLD-EPFLISWSGIRNWRNSYQDGVYG----T-TCPIPPGKNY 112 (543)
T ss_pred EEEEEEEcCCCCC-------CcEEEECCCEEEEEecCCCC-CCccEEECCcccCCCccccCCCC----C-CCccCCCCcE
Confidence 4457889998754 89999999999999999984 4456666665432 134799643 2 3468999999
Q ss_pred ccccCCcceEEEEEEeCCC
Q 047904 259 NGTFDNSTVAGILEYERPP 277 (448)
Q Consensus 259 dv~~~~~~~~aiL~Y~~~~ 277 (448)
.-+|......|..=|....
T Consensus 113 tY~F~~~~q~GT~WYHsH~ 131 (543)
T PLN02991 113 TYALQVKDQIGSFYYFPSL 131 (543)
T ss_pred EEEEEeCCCCcceEEecCc
Confidence 9888754567888888663
No 33
>PLN02792 oxidoreductase
Probab=97.13 E-value=0.0034 Score=66.88 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=60.5
Q ss_pred cceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEE---ecCceeceeEeeeEEecCCcc
Q 047904 181 VDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVE---ADVVYVKPFETETLLIAPGQT 257 (448)
Q Consensus 181 ~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva---~DG~~v~P~~~~~i~i~~GeR 257 (448)
-.++++||+..+ ++|+++.|+++++++.|-.. ....+ |-|-+.+-. .||.+. ++ -.|.||+.
T Consensus 35 ~~~~~vNGq~PG-------P~I~~~~GD~v~V~v~N~L~-~~tti--HWHGl~q~~~~~~DGv~~----tq-cPI~PG~s 99 (536)
T PLN02792 35 RRGILINGQFPG-------PEIRSLTNDNLVINVHNDLD-EPFLL--SWNGVHMRKNSYQDGVYG----TT-CPIPPGKN 99 (536)
T ss_pred EEEEEECCCCCC-------CcEEEECCCEEEEEEEeCCC-CCcCE--eCCCcccCCCCccCCCCC----Cc-CccCCCCc
Confidence 456888888754 99999999999999999975 33444 445444443 799643 22 57899999
Q ss_pred cccccCCcceEEEEEEeCCC
Q 047904 258 TNGTFDNSTVAGILEYERPP 277 (448)
Q Consensus 258 ydv~~~~~~~~aiL~Y~~~~ 277 (448)
+.-+|+.....|..-|....
T Consensus 100 ftY~F~~~~q~GT~WYHsH~ 119 (536)
T PLN02792 100 YTYDFQVKDQVGSYFYFPSL 119 (536)
T ss_pred EEEEEEeCCCccceEEecCc
Confidence 99888765568888888663
No 34
>PLN02604 oxidoreductase
Probab=97.07 E-value=0.0087 Score=64.43 Aligned_cols=84 Identities=19% Similarity=0.106 Sum_probs=59.9
Q ss_pred cceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEE-EEecCceeceeEeeeEEecCCcccc
Q 047904 181 VDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKV-VEADVVYVKPFETETLLIAPGQTTN 259 (448)
Q Consensus 181 ~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~V-va~DG~~v~P~~~~~i~i~~GeRyd 259 (448)
-.++++||+..+ +.|+++.|++++++|.|........||.||+.+.- -..||.+- +....|.|||++.
T Consensus 43 r~~~~~Ng~~pg-------P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~----~tq~~i~pg~s~~ 111 (566)
T PLN02604 43 KLVITINGRSPG-------PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEG----VTQCPILPGETFT 111 (566)
T ss_pred eeEEEECCccCC-------CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCc----cccCccCCCCeEE
Confidence 345777887643 88999999999999999975567889999985321 12588432 2345789999999
Q ss_pred cccCCcceEEEEEEeCC
Q 047904 260 GTFDNSTVAGILEYERP 276 (448)
Q Consensus 260 v~~~~~~~~aiL~Y~~~ 276 (448)
.+|.. ...|..-|...
T Consensus 112 y~f~~-~~~Gt~wyH~H 127 (566)
T PLN02604 112 YEFVV-DRPGTYLYHAH 127 (566)
T ss_pred EEEEc-CCCEEEEEeeC
Confidence 87754 34556666654
No 35
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=97.07 E-value=0.0043 Score=66.35 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=60.4
Q ss_pred ceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEE-EEecCceeceeEeeeEEecCCccccc
Q 047904 182 DVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKV-VEADVVYVKPFETETLLIAPGQTTNG 260 (448)
Q Consensus 182 ~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~V-va~DG~~v~P~~~~~i~i~~GeRydv 260 (448)
.++++||+..+ ++|+++.|+++++++.|--......+|.||-.+.- -..||.+...+ -.|.||+.+.-
T Consensus 28 ~~~~~NG~~PG-------P~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQ----cpI~PG~sf~Y 96 (538)
T TIGR03390 28 YSVVVNGTSPG-------PEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQ----WPIPPGHFFDY 96 (538)
T ss_pred EEEEECCcCCC-------CeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccccc----CCCCCCCcEEE
Confidence 46788888754 99999999999999999875455677777765432 24799775311 24789998887
Q ss_pred ccCC-cceEEEEEEeCCC
Q 047904 261 TFDN-STVAGILEYERPP 277 (448)
Q Consensus 261 ~~~~-~~~~aiL~Y~~~~ 277 (448)
+|+. ....|..-|....
T Consensus 97 ~f~~~~~q~GT~WYHsH~ 114 (538)
T TIGR03390 97 EIKPEPGDAGSYFYHSHV 114 (538)
T ss_pred EEEecCCCCeeeEEecCC
Confidence 7753 2456777787653
No 36
>PLN02191 L-ascorbate oxidase
Probab=96.90 E-value=0.011 Score=63.57 Aligned_cols=85 Identities=20% Similarity=0.163 Sum_probs=59.0
Q ss_pred ccceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEE-EEecCceeceeEeeeEEecCCccc
Q 047904 180 LVDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKV-VEADVVYVKPFETETLLIAPGQTT 258 (448)
Q Consensus 180 ~~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~V-va~DG~~v~P~~~~~i~i~~GeRy 258 (448)
...++++||+..+ ++|+++.|+++++++.|-.......+|.||..+.= -..||.+-.. .-.|.||+++
T Consensus 41 ~~~v~~vNg~~pG-------P~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt----q~pI~PG~s~ 109 (574)
T PLN02191 41 EGAVMTVNGQFPG-------PTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT----QCAINPGETF 109 (574)
T ss_pred eeeEEEECCcCCC-------CeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc----cCCcCCCCeE
Confidence 3456788888754 99999999999999999975556777777765321 1258865321 1358889988
Q ss_pred ccccCCcceEEEEEEeCC
Q 047904 259 NGTFDNSTVAGILEYERP 276 (448)
Q Consensus 259 dv~~~~~~~~aiL~Y~~~ 276 (448)
..+|+. ...|..-|...
T Consensus 110 ~Y~f~~-~~~GT~wYHsH 126 (574)
T PLN02191 110 TYKFTV-EKPGTHFYHGH 126 (574)
T ss_pred EEEEEC-CCCeEEEEeeC
Confidence 876654 24566666654
No 37
>PRK02710 plastocyanin; Provisional
Probab=96.83 E-value=0.0046 Score=52.49 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=36.4
Q ss_pred cCCCceEEEecCCee---------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 49 KFPGPRIVAREGDQL---------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 49 ~~PGP~I~v~~Gd~v---------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
+|--+.|+|++||+| |-+...+ .++-. -+..-+.||++++|.|+. +|+|-|+|=
T Consensus 43 ~F~P~~i~v~~Gd~V~~~N~~~~~H~v~~~~---~~~~~-~~~~~~~pg~t~~~tF~~---~G~y~y~C~ 105 (119)
T PRK02710 43 AFEPSTLTIKAGDTVKWVNNKLAPHNAVFDG---AKELS-HKDLAFAPGESWEETFSE---AGTYTYYCE 105 (119)
T ss_pred EEeCCEEEEcCCCEEEEEECCCCCceEEecC---Ccccc-ccccccCCCCEEEEEecC---CEEEEEEcC
Confidence 344468999999999 5443221 11111 122347899999999973 899999995
No 38
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=96.74 E-value=0.021 Score=61.57 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=62.2
Q ss_pred ceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEE-EecCceeceeEeeeEEecCCccccc
Q 047904 182 DVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVV-EADVVYVKPFETETLLIAPGQTTNG 260 (448)
Q Consensus 182 ~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vv-a~DG~~v~P~~~~~i~i~~GeRydv 260 (448)
.++++||+..+ ++|+++.|+++++++.|-.. ....+|.||-.+.-- -.||.+. ..-.|.||+++.-
T Consensus 49 ~vi~vNGq~PG-------PtI~~~~GD~v~V~V~N~L~-~~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~PG~sftY 115 (596)
T PLN00044 49 EAIGINGQFPG-------PALNVTTNWNLVVNVRNALD-EPLLLTWHGVQQRKSAWQDGVGG-----TNCAIPAGWNWTY 115 (596)
T ss_pred EEEEEcCcCCC-------CcEEEECCCEEEEEEEeCCC-CCccEEECCccCCCCccccCCCC-----CcCCcCCCCcEEE
Confidence 46788888754 99999999999999999985 556777777654433 4799643 2357899999998
Q ss_pred ccCCcceEEEEEEeCC
Q 047904 261 TFDNSTVAGILEYERP 276 (448)
Q Consensus 261 ~~~~~~~~aiL~Y~~~ 276 (448)
+|+.....|..-|...
T Consensus 116 ~F~~~dq~GT~WYHsH 131 (596)
T PLN00044 116 QFQVKDQVGSFFYAPS 131 (596)
T ss_pred EEEeCCCCceeEeecc
Confidence 8765456788888765
No 39
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.24 E-value=0.008 Score=62.96 Aligned_cols=76 Identities=24% Similarity=0.264 Sum_probs=62.1
Q ss_pred ceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCcee---ceeEeeeEEecCCccc
Q 047904 182 DVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYV---KPFETETLLIAPGQTT 258 (448)
Q Consensus 182 ~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v---~P~~~~~i~i~~GeRy 258 (448)
..+.+|++.... ....+.++.|+++||+|.|-+. ..+.||++|+.|+|++.| ... .+...|++.+.+|+|+
T Consensus 343 ~~~~~n~~~~~~----~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~ 416 (451)
T COG2132 343 YVWAINGKAFDD----NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERL 416 (451)
T ss_pred ccccccCccCCC----CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEE
Confidence 456777765431 2367899999999999999997 889999999999999999 333 3577899999999999
Q ss_pred ccccC
Q 047904 259 NGTFD 263 (448)
Q Consensus 259 dv~~~ 263 (448)
.+.+.
T Consensus 417 ~v~~~ 421 (451)
T COG2132 417 LVRFD 421 (451)
T ss_pred EEEEe
Confidence 98664
No 40
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.18 E-value=0.0041 Score=51.33 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=36.8
Q ss_pred cCceeceeEEEEEEEEEEeeCCcCCCceEEEecCCee-----------eecccCCCCCCCCCCccccCCCCCCCeeEEEE
Q 047904 27 AEPAFGITRHYEFDIKLQNLNGKFPGPRIVAREGDQL-----------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNF 95 (448)
Q Consensus 27 ~~~~~~~~~~~~l~i~~~~~NG~~PGP~I~v~~Gd~v-----------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f 95 (448)
+....+..+..+++++. +++=-..|++++|+.| |.+..... +.. ..|.||++.++.|
T Consensus 13 ~~~~~~~~~~v~I~~~~----~~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~-------~~~-~~l~~g~~~~~~f 80 (104)
T PF13473_consen 13 SSASAAAAQTVTITVTD----FGFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDL-------GIS-KVLPPGETATVTF 80 (104)
T ss_dssp ---------------------EEEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGG-------TEE-EEE-TT-EEEEEE
T ss_pred ccccccccccccccccC----CeEecCEEEEcCCCeEEEEEEECCCCcEEEEECCC-------ceE-EEECCCCEEEEEE
Confidence 33344555566666643 4553449999999955 77775541 222 4689999999999
Q ss_pred EeCCccceeEEeecCCC
Q 047904 96 TIVGRRGKLWWHAHMTC 112 (448)
Q Consensus 96 ~~~~~~GT~wYH~H~~~ 112 (448)
+. ..+|+|=|+|-.++
T Consensus 81 ~~-~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 81 TP-LKPGEYEFYCTMHP 96 (104)
T ss_dssp EE--S-EEEEEB-SSS-
T ss_pred cC-CCCEEEEEEcCCCC
Confidence 85 89999999997664
No 41
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.05 E-value=0.0068 Score=49.59 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=36.5
Q ss_pred CceEEEecCCee---------eecccCCCCCCCCCCcc------ccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 52 GPRIVAREGDQL---------HGIRRLRSGWADGPAYI------TQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 52 GP~I~v~~Gd~v---------HGl~~~~~~~~DGvp~v------tq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
-+.|+|++||+| |-+......+..|.-.- ....+.||+++++.|+ .+|+|.|+|-
T Consensus 16 P~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~ 85 (99)
T PF00127_consen 16 PSEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT 85 (99)
T ss_dssp SSEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET
T ss_pred CCEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC
Confidence 468999999999 66555432221111100 1123689999999997 5899999993
No 42
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=95.82 E-value=0.021 Score=45.05 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=35.4
Q ss_pred CceEEEecCCee---------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeecCC
Q 047904 52 GPRIVAREGDQL---------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAHMT 111 (448)
Q Consensus 52 GP~I~v~~Gd~v---------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H~~ 111 (448)
-+.|+|++||+| |.+..... .++.-...-..+.||++|++.| .++|+|-|||=.|
T Consensus 10 P~~i~v~~GdtVt~~N~d~~~Hnv~~~~g--~~~~~~~~~~~~~~g~~~~~tf---~~~G~y~y~C~~H 73 (83)
T TIGR02657 10 TPELHVKVGDTVTWINREAMPHNVHFVAG--VLGEAALKGPMMKKEQAYSLTF---TEAGTYDYHCTPH 73 (83)
T ss_pred CCEEEECCCCEEEEEECCCCCccEEecCC--CCccccccccccCCCCEEEEEC---CCCEEEEEEcCCC
Confidence 468999999999 77764321 1111111112357788888777 4589999999655
No 43
>PRK10883 FtsI repressor; Provisional
Probab=95.69 E-value=0.017 Score=60.80 Aligned_cols=68 Identities=9% Similarity=-0.037 Sum_probs=52.0
Q ss_pred eecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceece---eEeeeEEecCCccccc
Q 047904 184 ILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKP---FETETLLIAPGQTTNG 260 (448)
Q Consensus 184 ~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P---~~~~~i~i~~GeRydv 260 (448)
+.+||+.... ....+.++.|++.+|+|.|.. .+.||||+|.|+|++.||....| -+.|+|.+. +++.+
T Consensus 363 ~~INg~~~~~----~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~gwkDTV~v~--~~v~i 433 (471)
T PRK10883 363 PGINGALWDM----NRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRGWKDTVWVD--GQVEL 433 (471)
T ss_pred CccCCcccCC----CcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccCcCcEEEcC--CeEEE
Confidence 4688886431 123468999999999998863 69999999999999999986654 357999994 45655
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=95.40 E-value=0.033 Score=45.56 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=36.4
Q ss_pred CCCceEEEecCCee---------eecccCCCCCCCCC----Ccc--ccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 50 FPGPRIVAREGDQL---------HGIRRLRSGWADGP----AYI--TQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 50 ~PGP~I~v~~Gd~v---------HGl~~~~~~~~DGv----p~v--tq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
|--..|+|++||+| |-+........+|. +.. +..-+.||+++++.|.. +|+|+|||-
T Consensus 14 F~P~~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~ 85 (99)
T TIGR02656 14 FEPAKISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE 85 (99)
T ss_pred EeCCEEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC
Confidence 33457999999999 55443321111111 111 22346899999999863 899999996
No 45
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=95.21 E-value=0.0084 Score=50.72 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=60.7
Q ss_pred cceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEE-EecCceeceeEeeeEEecCCcccc
Q 047904 181 VDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVV-EADVVYVKPFETETLLIAPGQTTN 259 (448)
Q Consensus 181 ~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vv-a~DG~~v~P~~~~~i~i~~GeRyd 259 (448)
..++++||+..+ ++|+++.|+++++++.|.. .....+|.+|-.+.-- ..||.+-.+ .-.|.||+++.
T Consensus 14 ~~~~~~ng~~pG-------PtI~v~~Gd~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~~~ 81 (117)
T PF07732_consen 14 RKVWTYNGQFPG-------PTIRVREGDTVRITVTNNL-DEPTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGESFT 81 (117)
T ss_dssp EEEEEETTBSSE-------EEEEEETTEEEEEEEEEES-SSGBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEEEE
T ss_pred EEEEEECCCCCC-------CEEEEEcCCeeEEEEEecc-ccccccccceeeeeeeeecCCccccc----ceeEEeeccee
Confidence 456777877643 8999999999999999999 5667888888543211 257765422 23488899988
Q ss_pred cccCCcceEEEEEEeCCC
Q 047904 260 GTFDNSTVAGILEYERPP 277 (448)
Q Consensus 260 v~~~~~~~~aiL~Y~~~~ 277 (448)
..|......+..-|....
T Consensus 82 Y~~~~~~~~Gt~wYH~H~ 99 (117)
T PF07732_consen 82 YEFTANQQAGTYWYHSHV 99 (117)
T ss_dssp EEEEESSCSEEEEEEECS
T ss_pred eeEeeeccccceeEeeCC
Confidence 877655556778887664
No 46
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.10 E-value=0.43 Score=51.09 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=64.1
Q ss_pred cceeecccccccccCcccceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCe-eEEEEecCceeceeEeeeEEecCCcccc
Q 047904 181 VDVILSNQEYIGEMNAGRDMILKVKPGKTYLLRIINAALNDELFFSIANHT-LKVVEADVVYVKPFETETLLIAPGQTTN 259 (448)
Q Consensus 181 ~~~~~~ng~~~~~~~~~~~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~-~~Vva~DG~~v~P~~~~~i~i~~GeRyd 259 (448)
..++++||+..+ |.|.++.|+++.++++|-. ...+.+|-+|-. .+=--.||.++. .=.|.|||.|-
T Consensus 47 ~~vi~iNG~fPG-------P~I~~~~gD~ivV~v~N~~-~~~~sihWhGv~q~kn~w~DG~~~T-----qCPI~Pg~~~t 113 (563)
T KOG1263|consen 47 KQVITINGQFPG-------PTINAEEGDTIVVNVVNRL-DEPFSIHWHGVRQRKNPWQDGVYIT-----QCPIQPGENFT 113 (563)
T ss_pred ceeEeecCCCCC-------CeEEEEeCCEEEEEEEeCC-CCceEEEeccccccCCccccCCccc-----cCCcCCCCeEE
Confidence 346788888754 9999999999999999995 477777777753 333455995542 22478999999
Q ss_pred cccCCcceEEEEEEeCCC
Q 047904 260 GTFDNSTVAGILEYERPP 277 (448)
Q Consensus 260 v~~~~~~~~aiL~Y~~~~ 277 (448)
-+|+...+.|.+-|..+.
T Consensus 114 Y~F~v~~q~GT~~yh~h~ 131 (563)
T KOG1263|consen 114 YRFTVKDQIGTLWYHSHV 131 (563)
T ss_pred EEEEeCCcceeEEEeecc
Confidence 888888888889898664
No 47
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.52 E-value=0.041 Score=58.88 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=41.8
Q ss_pred cCCCceEEEecCCee--------------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeecC
Q 047904 49 KFPGPRIVAREGDQL--------------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAHM 110 (448)
Q Consensus 49 ~~PGP~I~v~~Gd~v--------------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H~ 110 (448)
.|=-+.|+|++||+| ||+.+++. | +. .-|.||++.+..|++ +++|+|||||..
T Consensus 551 ~f~p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~----n---I~-~dv~PG~t~svtF~a-dkPGvy~~~Cte 617 (635)
T PRK02888 551 AFGLREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNY----G---VN-MEVAPQATASVTFTA-DKPGVYWYYCTW 617 (635)
T ss_pred ccCCceEEecCCCEEEEEEEeCCcccccccceeeccc----C---cc-EEEcCCceEEEEEEc-CCCEEEEEECCc
Confidence 343357999999999 99887652 1 11 347899999999997 899999999964
No 48
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=91.50 E-value=0.25 Score=44.01 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=34.2
Q ss_pred eeEEEeecCCEEEEEEeecCCCCCCCCCcccCCCceEEEEec
Q 047904 400 TTLVVLTFNTNVELIMQDTSILGTESHPLHLHGFNFFVIGQG 441 (448)
Q Consensus 400 ~~~~~v~~g~~Vdivi~N~~~~~~~~HP~HLHGh~F~Vl~~G 441 (448)
..++.++.|+++.|.|.|.+. ...|.||++||+|+|++.-
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~D 98 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAAD 98 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEET
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeec
Confidence 457899999999999999764 4579999999999999973
No 49
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=89.86 E-value=0.96 Score=38.05 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCCceEEEecCCee----------eecccCCCCCCCCCCcc-ccCCCCCCCeeEEEEEeCCccceeEEeecCC
Q 047904 50 FPGPRIVAREGDQL----------HGIRRLRSGWADGPAYI-TQCPIQTGQSCVYNFTIVGRRGKLWWHAHMT 111 (448)
Q Consensus 50 ~PGP~I~v~~Gd~v----------HGl~~~~~~~~DGvp~v-tq~pI~PG~~ftY~f~~~~~~GT~wYH~H~~ 111 (448)
|=-..|+|++||+| |-.... +|...- ......+|++|+|.|. .+|+|=|+|=.|
T Consensus 39 F~P~~ltV~~GdTVtw~~~~d~~~HnV~s~-----~~~~f~s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH 103 (115)
T TIGR03102 39 FDPPAIRVDPGTTVVWEWTGEGGGHNVVSD-----GDGDLDESERVSEEGTTYEHTFE---EPGIYLYVCVPH 103 (115)
T ss_pred EeCCEEEECCCCEEEEEECCCCCCEEEEEC-----CCCCccccccccCCCCEEEEEec---CCcEEEEEccCC
Confidence 33457899999999 444321 211111 1123578999999995 589999999644
No 50
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=88.78 E-value=1.1 Score=37.88 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=31.9
Q ss_pred CceEEEecCCee--------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeecCC
Q 047904 52 GPRIVAREGDQL--------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAHMT 111 (448)
Q Consensus 52 GP~I~v~~Gd~v--------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H~~ 111 (448)
...|+|++||+| |-........-||... ..-.+|+++++.| +.+|+|=|+|=.|
T Consensus 14 P~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH 75 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDKGHNVETIKGMIPEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPH 75 (116)
T ss_pred CCEEEECCCCEEEEEECCCCeeEEEccCCCcCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCC
Confidence 458999999999 5433211111233321 1123566666666 4689999999644
No 51
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=87.96 E-value=1 Score=38.64 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=32.4
Q ss_pred Cc-eEEEecCCee---------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeecC
Q 047904 52 GP-RIVAREGDQL---------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAHM 110 (448)
Q Consensus 52 GP-~I~v~~Gd~v---------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H~ 110 (448)
.| .|+|++||+| |-.......--+|.- ...-.+|++|++.|+ .+|+|-|.|=.
T Consensus 52 ~PA~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~P 114 (128)
T COG3794 52 EPAEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPEGSG---TLKAGINESFTHTFE---TPGEYTYYCTP 114 (128)
T ss_pred cCcEEEECCCCEEEEEECCCCCceEEEeCCCCccccc---ccccCCCcceEEEec---ccceEEEEecc
Confidence 44 8999999999 554433321012222 122334577777665 49999999943
No 52
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=87.72 E-value=1.1 Score=38.09 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=40.3
Q ss_pred CceEEEecCCee----------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 52 GPRIVAREGDQL----------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 52 GP~I~v~~Gd~v----------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
.+.|++..|++| ||+.++.. ++ +.-+.||..-+..|++ +.+|+|++.|.
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DViHsf~ip~~-------~~-k~d~~PG~~~~~~~~~-~~~G~y~~~C~ 103 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDVIHSFWIPEL-------GI-KMDAIPGRTNSVTFTP-DKPGTYYGQCA 103 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS-EEEEETTC-------TE-EEEEBTTCEEEEEEEE-SSSEEEEEEE-
T ss_pred cceecccccceEeEEEEcCCcccccccccc-------Cc-ccccccccceeeeeee-ccCCcEEEcCc
Confidence 468999999999 99998763 22 3457899999999997 89999999995
No 53
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=86.81 E-value=2.2 Score=36.87 Aligned_cols=48 Identities=25% Similarity=0.196 Sum_probs=38.1
Q ss_pred ceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCcccccccC
Q 047904 199 DMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGTFD 263 (448)
Q Consensus 199 ~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~~~ 263 (448)
+..|+|++|++++|++.|... ..+.|.++++. -+..|.+||+..+++.
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~ 107 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFK 107 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEE
Confidence 478999999999999999986 56777777652 1567888999887664
No 54
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=85.08 E-value=7.3 Score=35.25 Aligned_cols=67 Identities=22% Similarity=0.208 Sum_probs=45.5
Q ss_pred eCCcCCC-ceEEEecCCee-----------eeccc--CCC-------CCCCCC----Ccccc-----CCCCCCCeeEEEE
Q 047904 46 LNGKFPG-PRIVAREGDQL-----------HGIRR--LRS-------GWADGP----AYITQ-----CPIQTGQSCVYNF 95 (448)
Q Consensus 46 ~NG~~PG-P~I~v~~Gd~v-----------HGl~~--~~~-------~~~DGv----p~vtq-----~pI~PG~~ftY~f 95 (448)
+||+..| |+|.+-.|-+| |-+-. .++ ...||. +|.++ ..|.+|++..=.|
T Consensus 77 fnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~ 156 (195)
T TIGR03094 77 FNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWW 156 (195)
T ss_pred ccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEe
Confidence 8999888 89999999999 66543 222 123553 23221 2356788866566
Q ss_pred EeCCccceeEEeecCCCC
Q 047904 96 TIVGRRGKLWWHAHMTCL 113 (448)
Q Consensus 96 ~~~~~~GT~wYH~H~~~~ 113 (448)
. +-++|+|||-|-.-+.
T Consensus 157 ~-~~~~G~YwlvCgipGH 173 (195)
T TIGR03094 157 N-DTSAGKYWLVCGITGH 173 (195)
T ss_pred c-cCCCeeEEEEcccCCh
Confidence 6 4799999999976655
No 55
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=83.31 E-value=6.7 Score=36.04 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=52.4
Q ss_pred eceeEEEEEEEEEEe-----eCCcCCC-ceEEEecCCee-----------eecccC--C-------CCCCCCCC----cc
Q 047904 31 FGITRHYEFDIKLQN-----LNGKFPG-PRIVAREGDQL-----------HGIRRL--R-------SGWADGPA----YI 80 (448)
Q Consensus 31 ~~~~~~~~l~i~~~~-----~NG~~PG-P~I~v~~Gd~v-----------HGl~~~--~-------~~~~DGvp----~v 80 (448)
+.|+++..+.+...- |||..=| ++|.+-.|-+| |-+-+- . .-+.||.- |.
T Consensus 58 snkTV~i~l~a~~~~~~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~ 137 (196)
T PF06525_consen 58 SNKTVFIYLVAWSSGTNPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGA 137 (196)
T ss_pred CCCEEEEEEEEccCCCCceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccC
Confidence 445555555443322 8998766 89999999888 765531 1 12345521 11
Q ss_pred -----ccCCCCCCCeeEEEEEeCCccceeEEeecCCCC
Q 047904 81 -----TQCPIQTGQSCVYNFTIVGRRGKLWWHAHMTCL 113 (448)
Q Consensus 81 -----tq~pI~PG~~ftY~f~~~~~~GT~wYH~H~~~~ 113 (448)
+-..|.+|++..-.|.. -++|+|||=|-..+.
T Consensus 138 s~~~~~~~GI~~G~s~~~~~~~-l~aG~YwlvC~ipGH 174 (196)
T PF06525_consen 138 SPGNYTSNGISSGQSASGVYND-LPAGYYWLVCGIPGH 174 (196)
T ss_pred CCCccccCCccCCceeeEEEcc-CCCceEEEEccCCCh
Confidence 11257899999877753 579999999976554
No 56
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=82.01 E-value=3 Score=33.86 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=36.0
Q ss_pred eEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceece-eEeeeEEecCCcccccccCC
Q 047904 200 MILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKP-FETETLLIAPGQTTNGTFDN 264 (448)
Q Consensus 200 ~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P-~~~~~i~i~~GeRydv~~~~ 264 (448)
..|+|++|++++|. |.+. ..+.+.++...+-.-+ ....+ ...+.+.+.|||++++.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~~-~~H~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKG-GPHNVVFDEDAVPAGV---KELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred CEEEECCCCEEEEE--ECCC-CCceEEECCCCCccch---hhhcccccccccccCCCCEEEEEeCC
Confidence 67999999998665 7763 4466665433211100 00111 22356789999999998865
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=80.68 E-value=2.9 Score=34.19 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.4
Q ss_pred ceEEEEeCCcEEEEEEEeccCCCeEEEEEcC
Q 047904 199 DMILKVKPGKTYLLRIINAALNDELFFSIAN 229 (448)
Q Consensus 199 ~~~i~v~~G~~~RlRliNa~~~~~~~~~idg 229 (448)
+..+++++|+.++|++.|.+... +.|.+++
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~ 63 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRP-HEFVIPD 63 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS--EEEEEGG
T ss_pred cCEEEEcCCCeEEEEEEECCCCc-EEEEECC
Confidence 37899999999999999998654 7777776
No 58
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=77.05 E-value=4.6 Score=35.57 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.6
Q ss_pred eEEEEeCCcEEEEEEEeccCCCeEEEEEcC
Q 047904 200 MILKVKPGKTYLLRIINAALNDELFFSIAN 229 (448)
Q Consensus 200 ~~i~v~~G~~~RlRliNa~~~~~~~~~idg 229 (448)
+.|+++.|+++++++.|......+.|.|+.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~ 81 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISK 81 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeec
Confidence 889999999999999999754445555543
No 59
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=62.37 E-value=14 Score=35.42 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=39.1
Q ss_pred ceEEEecCCee----------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeecC
Q 047904 53 PRIVAREGDQL----------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAHM 110 (448)
Q Consensus 53 P~I~v~~Gd~v----------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H~ 110 (448)
..|.+..|..| ||...+.. + .|.-..||...+..+++ +++|+|.-+|+.
T Consensus 137 n~l~lPv~~~V~f~ltS~DViHsF~IP~l-------~-~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae 195 (247)
T COG1622 137 NELVLPVGRPVRFKLTSADVIHSFWIPQL-------G-GKIDAIPGMTTELWLTA-NKPGTYRGICAE 195 (247)
T ss_pred ceEEEeCCCeEEEEEEechhceeEEecCC-------C-ceeeecCCceEEEEEec-CCCeEEEEEcHh
Confidence 67777777777 99998774 2 24456789999999996 999999999863
No 60
>PRK02710 plastocyanin; Provisional
Probab=62.36 E-value=17 Score=30.54 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=33.4
Q ss_pred ceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCcccccccCC
Q 047904 199 DMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGTFDN 264 (448)
Q Consensus 199 ~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~~~~ 264 (448)
+..++|++|++++| +|... ..+++.+++. .......+.+.+|+++++.|..
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~-~~H~v~~~~~------------~~~~~~~~~~~pg~t~~~tF~~ 96 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKL-APHNAVFDGA------------KELSHKDLAFAPGESWEETFSE 96 (119)
T ss_pred CCEEEEcCCCEEEE--EECCC-CCceEEecCC------------ccccccccccCCCCEEEEEecC
Confidence 37899999998765 57653 4466655421 1111234668899999988765
No 61
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=59.88 E-value=28 Score=32.16 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=38.6
Q ss_pred CceEEEecCCee----------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 52 GPRIVAREGDQL----------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 52 GP~I~v~~Gd~v----------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
...|++..|+.| ||...+.- ++ |.-+.||..-+..|++ +++|+|+..|.
T Consensus 116 ~~~l~vp~g~~v~~~~ts~DV~Hsf~ip~~-------~~-k~da~PG~~~~~~~~~-~~~G~y~~~c~ 174 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKDVIHSFWVPEL-------GG-KIDAIPGQYNALWFNA-DEPGVYYGYCA 174 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCchhhccccccc-------Cc-eEEecCCcEEEEEEEe-CCCEEEEEEeh
Confidence 458889999988 99988652 11 3446789999999986 89999999884
No 62
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=59.04 E-value=48 Score=29.15 Aligned_cols=18 Identities=22% Similarity=0.621 Sum_probs=16.0
Q ss_pred ccCCCCCCCeeEEEEEeC
Q 047904 81 TQCPIQTGQSCVYNFTIV 98 (448)
Q Consensus 81 tq~pI~PG~~ftY~f~~~ 98 (448)
--||+.+|++++|.+.+|
T Consensus 106 v~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 106 VYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ccCcccCCCceEEEEEee
Confidence 359999999999999985
No 63
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=55.01 E-value=65 Score=32.90 Aligned_cols=94 Identities=9% Similarity=0.105 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHhcCce---eceeEEEEEEEEEEeeCCcCCCceEEEecCCee---eecccCCCCC--CCCCCcc-ccC
Q 047904 13 LKGVLCSFIALCLLAEPA---FGITRHYEFDIKLQNLNGKFPGPRIVAREGDQL---HGIRRLRSGW--ADGPAYI-TQC 83 (448)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~NG~~PGP~I~v~~Gd~v---HGl~~~~~~~--~DGvp~v-tq~ 83 (448)
++-.++.+.+++++..+. ++..-.+.++|+ ++++--..+.|..|+.+ |-.......| .+|+--+ ---
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~a~~~~~v~Vti~----d~~c~p~~~tVpAG~~~f~V~N~~~~~~Efe~~~~~~vv~e~E 80 (375)
T PRK10378 5 FRRNALQLALAALFSSAFMANAADIPQVKVTVN----DKQCEPMTLTVNAGKTQFIIQNHSQKALEWEILKGVMVVEERE 80 (375)
T ss_pred hhhhHHHHHHHHhccCCcccccccCCceEEEEE----CCccccCceeeCCCCEEEEEEeCCCCcceEEeecccccccccc
Confidence 455445444444444332 222244666664 34665568888888755 2222222211 1332100 124
Q ss_pred CCCCCCeeEEEEEeCCccceeEEeecCCC
Q 047904 84 PIQTGQSCVYNFTIVGRRGKLWWHAHMTC 112 (448)
Q Consensus 84 pI~PG~~ftY~f~~~~~~GT~wYH~H~~~ 112 (448)
.|.||.+.++.+++ .+|+|=|+|-.++
T Consensus 81 nIaPG~s~~l~~~L--~pGtY~~~C~~~~ 107 (375)
T PRK10378 81 NIAPGFSQKMTANL--QPGEYDMTCGLLT 107 (375)
T ss_pred ccCCCCceEEEEec--CCceEEeecCcCC
Confidence 79999999988776 5999999995543
No 64
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=45.62 E-value=61 Score=26.91 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=10.7
Q ss_pred EEEEEeccCC-CeEEEEEcC
Q 047904 211 LLRIINAALN-DELFFSIAN 229 (448)
Q Consensus 211 RlRliNa~~~-~~~~~~idg 229 (448)
++|++|++.. ..+.+.++|
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg 22 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDG 22 (122)
T ss_pred EEEEEEcCCCCccEEEEECC
Confidence 5666666654 345555544
No 65
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=44.74 E-value=27 Score=27.41 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=19.6
Q ss_pred CCCCCCccccC----CCCCCCeeEEEEEeCCc---cceeEE
Q 047904 73 WADGPAYITQC----PIQTGQSCVYNFTIVGR---RGKLWW 106 (448)
Q Consensus 73 ~~DGvp~vtq~----pI~PG~~ftY~f~~~~~---~GT~wY 106 (448)
|.||-.. +|. -|+||++.+|+++.+.. +|+|..
T Consensus 41 wS~~~~F-tQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 41 WSDGKMF-TQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp TTTT--------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred ecCCchh-hheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 6777654 443 48999999999999733 699864
No 66
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=36.72 E-value=1.4e+02 Score=23.22 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=27.7
Q ss_pred EEEEEEEeccCCCeEEEEE-cCC--eeEEEEecCceec--------eeEeeeEEecCCccccc
Q 047904 209 TYLLRIINAALNDELFFSI-ANH--TLKVVEADVVYVK--------PFETETLLIAPGQTTNG 260 (448)
Q Consensus 209 ~~RlRliNa~~~~~~~~~i-dgh--~~~Vva~DG~~v~--------P~~~~~i~i~~GeRydv 260 (448)
.+.|++.|.+ ...+.|.+ .|+ .|.|...||..|- -+......|.|||....
T Consensus 3 ~~~l~v~N~s-~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~ 64 (82)
T PF12690_consen 3 EFTLTVTNNS-DEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTY 64 (82)
T ss_dssp EEEEEEEE-S-SS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEE
T ss_pred EEEEEEEeCC-CCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEE
Confidence 3568888888 45567776 344 4666666888873 13457899999998875
No 67
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=36.49 E-value=1.3e+02 Score=25.36 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=40.2
Q ss_pred eEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCcee-------ceeEeeeEEecCCccccc
Q 047904 200 MILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYV-------KPFETETLLIAPGQTTNG 260 (448)
Q Consensus 200 ~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v-------~P~~~~~i~i~~GeRydv 260 (448)
-.|++.....|+|++-. ....+|.|||.. |++.++..- .+.....+.+..|++|.+
T Consensus 52 G~~~~~~~G~y~f~~~~---~d~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i 114 (145)
T PF07691_consen 52 GYFKPPETGTYTFSLTS---DDGARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPI 114 (145)
T ss_dssp EEEEESSSEEEEEEEEE---SSEEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEE
T ss_pred EEEecccCceEEEEEEe---cccEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEE
Confidence 35778777889999983 335788899987 477776443 345677899999999998
No 68
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=34.72 E-value=76 Score=28.36 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=32.7
Q ss_pred eEEEecCCeeeecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 54 RIVAREGDQLHGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 54 ~I~v~~Gd~vHGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
.+.+...|-+|+..++.. ++- .-+.||..-+..|.+ ..+|+|+-.|.
T Consensus 84 r~~lTS~DVIHSF~VP~l-------gvK-~DavPGr~n~l~~~~-~~~G~y~gqCs 130 (162)
T PTZ00047 84 RFLITATDVIHSWSVPSL-------GIK-ADAIPGRLHKINTFI-LREGVFYGQCS 130 (162)
T ss_pred EEEEEeCccceeeecccc-------Cce-eeccCCceEEEEEec-CCCeEEEEEcc
Confidence 345566666699998763 222 223477777788876 88999999885
No 69
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.65 E-value=94 Score=28.32 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=21.8
Q ss_pred CCCCccccCCCCCCCeeEEEEEe-CCccceeEE
Q 047904 75 DGPAYITQCPIQTGQSCVYNFTI-VGRRGKLWW 106 (448)
Q Consensus 75 DGvp~vtq~pI~PG~~ftY~f~~-~~~~GT~wY 106 (448)
.|...++-.-|+||++.++.|.+ |...|.|=.
T Consensus 73 sG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~ 105 (181)
T PF05753_consen 73 SGSLSASWERIPPGENVSHSYVVRPKKSGYFNF 105 (181)
T ss_pred cCceEEEEEEECCCCeEEEEEEEeeeeeEEEEc
Confidence 34444445579999999999988 344676533
No 70
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=34.08 E-value=1e+02 Score=26.33 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=33.0
Q ss_pred EEEEEEEeccCCCeEEEEEcCCeeEEEEecCceec---e-eEeeeEEecCCcccc
Q 047904 209 TYLLRIINAALNDELFFSIANHTLKVVEADVVYVK---P-FETETLLIAPGQTTN 259 (448)
Q Consensus 209 ~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~---P-~~~~~i~i~~GeRyd 259 (448)
.|++||-|.+.. .+.+-+....|...||..-+ + +.-..=.|.|||.+.
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~ 83 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFE 83 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeE
Confidence 489999998753 45666677777777775432 1 334566889999776
No 71
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=33.52 E-value=71 Score=25.53 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=27.0
Q ss_pred EEEEEEEeccCCCeEEEEEcCCeeEEEEecCceec---e-eEeeeEEecCCcccc
Q 047904 209 TYLLRIINAALNDELFFSIANHTLKVVEADVVYVK---P-FETETLLIAPGQTTN 259 (448)
Q Consensus 209 ~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~---P-~~~~~i~i~~GeRyd 259 (448)
.|++||-|.+.. .+.|-.....|...||..-+ + +.-+.=.|.|||.+.
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~ 66 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFE 66 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEE
Confidence 488999999965 35555666666666663321 1 222456788998766
No 72
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=33.49 E-value=58 Score=32.92 Aligned_cols=53 Identities=25% Similarity=0.482 Sum_probs=32.6
Q ss_pred eCCcCCCceEEEecCCeeeecccCCCCCCCCCCccccCCCCCCCeeEEEEEeC-CccceeEEeecC
Q 047904 46 LNGKFPGPRIVAREGDQLHGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIV-GRRGKLWWHAHM 110 (448)
Q Consensus 46 ~NG~~PGP~I~v~~Gd~vHGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~-~~~GT~wYH~H~ 110 (448)
+|--.|||.+..++ .|+-|.|-.....|..|+++.|+..+. ..+|+|--|.-.
T Consensus 56 Lnv~~PGPv~vr~e------------~~ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~ 109 (381)
T PF04744_consen 56 LNVGEPGPVFVRKE------------RWINGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPML 109 (381)
T ss_dssp EEEESSSSSEEEEE------------EEETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEE
T ss_pred EecCCCCCeeeeee------------eeecCccccceEEeecCCeeeEEEEEecccCccccceeeE
Confidence 77778999887665 256676655556799999988888764 679997666543
No 73
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.43 E-value=58 Score=28.43 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=23.0
Q ss_pred cCCCCCCCeeEEEEE-e--CCccceeEEeecC
Q 047904 82 QCPIQTGQSCVYNFT-I--VGRRGKLWWHAHM 110 (448)
Q Consensus 82 q~pI~PG~~ftY~f~-~--~~~~GT~wYH~H~ 110 (448)
+.||+||++++-.+. + |...|+|.|++-+
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 578999999999994 2 3456999999854
No 74
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=33.42 E-value=85 Score=23.23 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=31.4
Q ss_pred EEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCccccc
Q 047904 202 LKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNG 260 (448)
Q Consensus 202 i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv 260 (448)
|++.+|+..+||.-... .+.+.+-..+|.. || ..+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g------~~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EG------DPDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CC------CCCCEEECCCCEEEe
Confidence 56778999999854433 3777777888876 55 234456666666665
No 75
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=32.82 E-value=74 Score=30.10 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=26.9
Q ss_pred eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 64 HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 64 HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
|+..++.- ++.+. .-||..-+..|.+ +++|+|+.-|.
T Consensus 161 Hsf~ip~l-------g~k~d-aiPG~~~~~~~~~-~~~G~~~g~Cs 197 (227)
T MTH00098 161 HSWAVPSL-------GLKTD-AIPGRLNQTTLMS-TRPGLYYGQCS 197 (227)
T ss_pred cccccccc-------cccee-cCCCceEEEEEec-CCcEEEEEECc
Confidence 99888652 33333 3478888888886 89999998774
No 76
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.71 E-value=84 Score=29.79 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=27.3
Q ss_pred eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 64 HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 64 HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
|+...+.- ++. .-..||..-...|.+ +.+|+|+-.|.
T Consensus 161 Hsf~ip~~-------~~k-~da~PG~~~~~~~~~-~~~G~~~g~C~ 197 (230)
T MTH00129 161 HSWAVPAL-------GVK-MDAVPGRLNQTAFIA-SRPGVFYGQCS 197 (230)
T ss_pred cceecccc-------CCc-cccCCCceEEEEEEe-CCceEEEEECh
Confidence 99888752 222 234588888888986 88999998874
No 77
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.85 E-value=80 Score=29.12 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=29.1
Q ss_pred cCCeeeecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 59 EGDQLHGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 59 ~Gd~vHGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
..|-+|+..++.- ++.+. ..||..-+..|++ +++|+|.--|.
T Consensus 132 S~DViHsf~vp~l-------~~k~d-~~PG~~~~~~~~~-~~~G~y~g~C~ 173 (194)
T MTH00047 132 SSDVIHSFSVPDL-------NLKMD-AIPGRINHLFFCP-DRHGVFVGYCS 173 (194)
T ss_pred cCccccceecccc-------Cceee-cCCCceEEEEEEc-CCCEEEEEEee
Confidence 3333399998763 22333 4588988888986 89999987763
No 78
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=31.13 E-value=1.6e+02 Score=24.74 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=33.9
Q ss_pred ceEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCceeceeEeeeEEecCCcccccccCCcceEEEEEEe
Q 047904 199 DMILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYVKPFETETLLIAPGQTTNGTFDNSTVAGILEYE 274 (448)
Q Consensus 199 ~~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v~P~~~~~i~i~~GeRydv~~~~~~~~aiL~Y~ 274 (448)
+..++|++|++++|.- ......|++.. .++.. .....+.+.+|++|++.|.. .++..|.
T Consensus 41 P~~ltV~~GdTVtw~~--~~d~~~HnV~s---------~~~~~---f~s~~~~~~~G~t~s~Tf~~---~G~Y~Y~ 99 (115)
T TIGR03102 41 PPAIRVDPGTTVVWEW--TGEGGGHNVVS---------DGDGD---LDESERVSEEGTTYEHTFEE---PGIYLYV 99 (115)
T ss_pred CCEEEECCCCEEEEEE--CCCCCCEEEEE---------CCCCC---ccccccccCCCCEEEEEecC---CcEEEEE
Confidence 4789999999998653 22222344332 23221 12234556789999988854 3444443
No 79
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=30.71 E-value=89 Score=26.23 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=16.3
Q ss_pred ceEEEEeCCcEEEEEEEec
Q 047904 199 DMILKVKPGKTYLLRIINA 217 (448)
Q Consensus 199 ~~~i~v~~G~~~RlRliNa 217 (448)
+..++|++|++++|...|.
T Consensus 14 P~~v~V~~GdTV~f~n~d~ 32 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK 32 (116)
T ss_pred CCEEEECCCCEEEEEECCC
Confidence 3789999999999887775
No 80
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=30.35 E-value=60 Score=27.43 Aligned_cols=18 Identities=33% Similarity=0.659 Sum_probs=15.6
Q ss_pred ccCCCCCCCeeEEEEEeC
Q 047904 81 TQCPIQTGQSCVYNFTIV 98 (448)
Q Consensus 81 tq~pI~PG~~ftY~f~~~ 98 (448)
..|||.+|+.++|.+.++
T Consensus 71 l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 71 VKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred EeCCCcCCcEEEEEEeee
Confidence 369999999999999873
No 81
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.54 E-value=3.7e+02 Score=25.31 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=34.5
Q ss_pred ceEEEecCCee----------eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 53 PRIVAREGDQL----------HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 53 P~I~v~~Gd~v----------HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
..|++..|..| |+..++.- ++.+ -..||..-...|++ +.+|+|+-.|.
T Consensus 140 n~l~lP~~~~v~~~~ts~DViHsf~ip~~-------~~k~-d~~Pg~~~~~~~~~-~~~g~y~~~C~ 197 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADVIHSWTVPSL-------GVKV-DAIPGRLNQLSFEP-KRPGVFYGQCS 197 (228)
T ss_pred CeEEEeeCcEEEEEEEcCccccceecccc-------Ccee-ECCCCcceeEEEEe-CCCEEEEEECc
Confidence 45666667666 99998753 2232 24588888888887 88999988774
No 82
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=27.25 E-value=16 Score=30.53 Aligned_cols=28 Identities=25% Similarity=0.597 Sum_probs=15.1
Q ss_pred EEEEEEEEEe---eCCcC-CCceEEEecCCee
Q 047904 36 HYEFDIKLQN---LNGKF-PGPRIVAREGDQL 63 (448)
Q Consensus 36 ~~~l~i~~~~---~NG~~-PGP~I~v~~Gd~v 63 (448)
.|+++|+... +.-.+ |||.|.|++||.|
T Consensus 23 g~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V 54 (118)
T PF01333_consen 23 GYEVTIETSDGETVVETIPAGPELIVSEGQSV 54 (118)
T ss_dssp EEEEEEETTTSEEEEEEEESSS-BS--TT-EE
T ss_pred CEEEEEECCCCCEEEEecCCCCeEEEcCCCEE
Confidence 4666663321 33334 6999999999999
No 83
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.02 E-value=1.1e+02 Score=28.89 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=26.3
Q ss_pred eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEeec
Q 047904 64 HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHAH 109 (448)
Q Consensus 64 HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~H 109 (448)
|+...+.- ++.+. .-||..-...|.+ +++|+|+--|.
T Consensus 161 Hsf~iP~l-------g~k~d-aiPG~~~~~~~~~-~~~G~~~g~Cs 197 (230)
T MTH00185 161 HSWTVPAL-------GVKMD-AVPGRLNQATFII-SRPGLYYGQCS 197 (230)
T ss_pred cccccccc-------CceeE-ecCCceEEEEEEe-CCcEEEEEEch
Confidence 99888753 22222 3478888888886 89999988774
No 84
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=25.91 E-value=2.8e+02 Score=23.24 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=31.1
Q ss_pred eEEEEeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCc
Q 047904 200 MILKVKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVV 240 (448)
Q Consensus 200 ~~i~v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~ 240 (448)
..+.++.|+.++|++-+.- -.+.|+|.+..+++-+.-|.
T Consensus 46 ~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k~d~~PG~ 84 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED--VIHSFWIPELGIKMDAIPGR 84 (120)
T ss_dssp SEEEEETTSEEEEEEEESS--S-EEEEETTCTEEEEEBTTC
T ss_pred ceecccccceEeEEEEcCC--ccccccccccCccccccccc
Confidence 6799999999999998844 66899999988877666553
No 85
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=25.49 E-value=52 Score=29.10 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=0.0
Q ss_pred cceEEEEeCCcEEEEEEEeccCCCeEEEEEc------CCeeEEEEecCceeceeEeeeEEecCCcc
Q 047904 198 RDMILKVKPGKTYLLRIINAALNDELFFSIA------NHTLKVVEADVVYVKPFETETLLIAPGQT 257 (448)
Q Consensus 198 ~~~~i~v~~G~~~RlRliNa~~~~~~~~~id------gh~~~Vva~DG~~v~P~~~~~i~i~~GeR 257 (448)
....+.++.|+++|+-+-|.+ ...+.|-++ +|.-..+.+| ..+=-..+++.|.||+.
T Consensus 61 ~p~~~~v~aG~tv~~v~~n~~-el~hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s 123 (158)
T COG4454 61 KPSSFEVKAGETVRFVLKNEG-ELKHEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKS 123 (158)
T ss_pred CCCcccccCCcEEeeeecCcc-cceEEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCc
No 86
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=24.69 E-value=35 Score=28.44 Aligned_cols=7 Identities=57% Similarity=1.497 Sum_probs=6.0
Q ss_pred EEeecCC
Q 047904 105 WWHAHMT 111 (448)
Q Consensus 105 wYH~H~~ 111 (448)
|||||..
T Consensus 70 ~YHSHP~ 76 (119)
T cd08058 70 WYHSHPT 76 (119)
T ss_pred EEecCCC
Confidence 9999964
No 87
>PF06236 MelC1: Tyrosinase co-factor MelC1; InterPro: IPR010928 This family consists of several tyrosinase co-factor MELC1 proteins from a number of Streptomyces species. The melanin operon (melC) of Streptomyces antibioticus contains two genes, melC1 and melC2 (apotyrosinase). It is thought that MelC1 forms a transient binary complex with the downstream apotyrosinase MelC2 to facilitate the incorporation of copper ion and the secretion of tyrosinase indicating that MelC1 is a chaperone for the apotyrosinase MelC2 [].; GO: 0005507 copper ion binding, 0042438 melanin biosynthetic process; PDB: 1WX4_B 2ZWD_B 2ZMZ_B 1WX2_B 1WX5_D 3AWX_B 3AWS_B 2ZMY_B 3AX0_B 2ZWG_B ....
Probab=24.45 E-value=1.4e+02 Score=25.41 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=23.7
Q ss_pred EEeCCcEEEEEEEeccC----CCeEEEEEcCCeeEEE-EecCceec
Q 047904 203 KVKPGKTYLLRIINAAL----NDELFFSIANHTLKVV-EADVVYVK 243 (448)
Q Consensus 203 ~v~~G~~~RlRliNa~~----~~~~~~~idgh~~~Vv-a~DG~~v~ 243 (448)
++-.|++++-+-.-++. ...+.+.|||.++.|+ -.||.++.
T Consensus 47 E~YrGRrI~g~~~~~~~~~~~~~~~~V~IDGr~LhvMr~ADGswlS 92 (125)
T PF06236_consen 47 EVYRGRRIQGTPAAAGGHAAHGGGYEVTIDGRPLHVMRRADGSWLS 92 (125)
T ss_dssp EEETTEEEEEEE-----------SEEEEETTEEE-EEE-TTS-EEE
T ss_pred eeecceeEEeeeCCCCccccCCCceEEEECCeEeeeEEcCCCCEEe
Confidence 55567777766655442 2357899999988888 67998884
No 88
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=24.21 E-value=25 Score=35.58 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred cCCee--eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEee
Q 047904 59 EGDQL--HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHA 108 (448)
Q Consensus 59 ~Gd~v--HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~ 108 (448)
.|..| -|++++-. ++|...-.-..|+||++.+-+|.+ +.|||...
T Consensus 76 ~g~~V~F~Gi~~~~~--~~~L~~d~F~~L~pG~sve~~fDi---A~~~dLs~ 122 (359)
T PF02102_consen 76 DGKEVPFTGIRLRYD--TSGLTEDAFQTLAPGESVEVEFDI---AETHDLSS 122 (359)
T ss_dssp ----------------------------------------------------
T ss_pred CCcccccccEEEEEe--cCCCCHHHceecCCCCeEEEEEcc---hheeecCC
Confidence 45556 88887653 555543334579999999999987 56776644
No 89
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=23.86 E-value=85 Score=29.76 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHhcCceeceeEEEEEEEEEEe-eCCcCCCceEEEecCCeee
Q 047904 13 LKGVLCSFIALCLLAEPAFGITRHYEFDIKLQN-LNGKFPGPRIVAREGDQLH 64 (448)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~NG~~PGP~I~v~~Gd~vH 64 (448)
|+..++.++.||+++.++....-...|+-+... =+|. .+|.|+-||.|+
T Consensus 5 ~~~~~~~ll~l~~~~~~~~~~~~~VyWNSSNp~F~~~d---~vI~v~igD~ld 54 (233)
T KOG3858|consen 5 LLILLFLLLILCPLGLAAGKNLHPVYWNSSNPRFRRGD---YVIYVQIGDYLD 54 (233)
T ss_pred hHhHHHHHHHhcccccCccccccceEecCCCcceecCC---ceEEeccCCEEE
Confidence 344444333444444333332455566666554 2344 899999999994
No 90
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=22.63 E-value=1.6e+02 Score=27.90 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=26.2
Q ss_pred eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEee
Q 047904 64 HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHA 108 (448)
Q Consensus 64 HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~ 108 (448)
|+..++.- ++. .-.-||..-...|++ +.+|+|+--|
T Consensus 161 Hsf~vP~~-------~~k-~daiPG~~~~~~~~~-~~~G~~~g~C 196 (228)
T MTH00008 161 HSWTVPSL-------GVK-VDAVPGRLNQIGFTI-TRPGVFYGQC 196 (228)
T ss_pred cccccccc-------Ccc-eecCCCceEEEEEEe-CCCEEEEEEC
Confidence 99888753 222 234478888888886 8999998776
No 91
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=22.55 E-value=52 Score=28.43 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=27.9
Q ss_pred EeCCcEEEEEEEeccCCCeEEEEEcCCeeEEEEecCcee
Q 047904 204 VKPGKTYLLRIINAALNDELFFSIANHTLKVVEADVVYV 242 (448)
Q Consensus 204 v~~G~~~RlRliNa~~~~~~~~~idgh~~~Vva~DG~~v 242 (448)
...|.++||||++.--. -+|-=..|.+++.++|...+
T Consensus 120 Y~~GaRVrlRl~DlELs--~rFLGs~~D~T~LEAdavLl 156 (173)
T KOG4078|consen 120 YQKGARVRLRLIDLELS--ERFLGSKHDLTLLEADAVLL 156 (173)
T ss_pred hhcCceEEEEEcChhHh--hhhhcCCccceEEecceeee
Confidence 34689999999987622 23333568999999999887
No 92
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=22.39 E-value=1.7e+02 Score=27.80 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=30.1
Q ss_pred eEEEEeCCcEEEEEEEeccCC--CeEEEEEcCCeeEEEEecCceec
Q 047904 200 MILKVKPGKTYLLRIINAALN--DELFFSIANHTLKVVEADVVYVK 243 (448)
Q Consensus 200 ~~i~v~~G~~~RlRliNa~~~--~~~~~~idgh~~~Vva~DG~~v~ 243 (448)
.++-+++| +|.||+|..+-. ....+-| +.-++++++|+.+.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I-~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNI-DNGEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEe-CCceEEEEcCCceeE
Confidence 56788886 789999987722 2233333 446789999999985
No 93
>PRK03641 hypothetical protein; Provisional
Probab=21.91 E-value=97 Score=29.11 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHhcCceeceeEEEEEEEEEEeeCCcCC
Q 047904 13 LKGVLCSFIALCLLAEPAFGITRHYEFDIKLQNLNGKFP 51 (448)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~NG~~P 51 (448)
||..++.++++||++..+.+.+....=+|.-..+||+-+
T Consensus 1 mk~~~~~~~~al~~s~~~~A~tL~~p~~i~lL~vnG~kv 39 (220)
T PRK03641 1 MKTGIVTTLLALCLPVSVFATTLKLSPDIDLLVLDGKKV 39 (220)
T ss_pred CchhHHHHHHHHHHhhhhheEEEeCCCceeEEEECCEEc
Confidence 555445555555566666655544444444444999864
No 94
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=21.88 E-value=2e+02 Score=30.17 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=33.5
Q ss_pred eeceeEEEEEEEEEEe-eCCcCCCceEEEecCCeeeecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEee
Q 047904 30 AFGITRHYEFDIKLQN-LNGKFPGPRIVAREGDQLHGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHA 108 (448)
Q Consensus 30 ~~~~~~~~~l~i~~~~-~NG~~PGP~I~v~~Gd~vHGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~ 108 (448)
....+.+|+|.-.... +||..=|-.=.-+ -||.- -|||-..-+-. | -+.+- .-+|||||-+
T Consensus 587 ikpPIIHYDLKPgNILLv~GtacGeIKITD-----FGLSK----IMdddSy~~vd----G----meLTS-QgAGTYWYLP 648 (775)
T KOG1151|consen 587 IKPPIIHYDLKPGNILLVNGTACGEIKITD-----FGLSK----IMDDDSYNSVD----G----MELTS-QGAGTYWYLP 648 (775)
T ss_pred cCCCeeeeccCCccEEEecCcccceeEeee-----cchhh----hccCCccCccc----c----eeeec-ccCceeeecC
Confidence 3456788888766655 8888766332222 23432 25544321110 1 23442 5699999986
No 95
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=21.87 E-value=2.8e+02 Score=24.08 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=14.6
Q ss_pred ccCCCCCCCeeEEEEE-eC--CccceeE
Q 047904 81 TQCPIQTGQSCVYNFT-IV--GRRGKLW 105 (448)
Q Consensus 81 tq~pI~PG~~ftY~f~-~~--~~~GT~w 105 (448)
+.|||+||.--.=.-+ +| .++|+|-
T Consensus 95 tsCPVepG~f~~~hsq~LPg~tPPG~Y~ 122 (153)
T KOG4680|consen 95 TSCPVEPGDFLVAHSQVLPGYTPPGSYV 122 (153)
T ss_pred ccCCcCcCceeeeeeEeccCcCCCceEE
Confidence 4699999975332222 23 4567754
No 96
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=21.71 E-value=3.7e+02 Score=25.02 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=29.4
Q ss_pred ecCCeeeecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEee
Q 047904 58 REGDQLHGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHA 108 (448)
Q Consensus 58 ~~Gd~vHGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~ 108 (448)
+..|-+|...++.- ++.+. .-||..-...|++ +++|+|+=.|
T Consensus 145 tS~DViHsf~vP~l-------~~k~d-aiPG~~~~~~~~~-~~~G~y~g~C 186 (217)
T TIGR01432 145 QSADTMTSFWIPQL-------GGQKY-AMTGMTMNWYLQA-DQVGTYRGRN 186 (217)
T ss_pred ECCchhhhhhchhh-------Cceee-cCCCceEEEEEEe-CCCEEEEEEe
Confidence 33333399988752 33333 4489999999997 8999998776
No 97
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=21.09 E-value=1.2e+02 Score=31.75 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=26.0
Q ss_pred ceEEEecCCee----eecccCCCCCCCCCCccccCCCCCCCeeEEEEEeCCccceeEEee
Q 047904 53 PRIVAREGDQL----HGIRRLRSGWADGPAYITQCPIQTGQSCVYNFTIVGRRGKLWWHA 108 (448)
Q Consensus 53 P~I~v~~Gd~v----HGl~~~~~~~~DGvp~vtq~pI~PG~~ftY~f~~~~~~GT~wYH~ 108 (448)
=++.|++||+| ||+... .|+.- --+.|......+|.+ +++|.+||-|
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~V----ed~th----gfv~p~~~v~~~v~p-q~tasvtf~a 608 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEV----EDLTH----GFVIPNYGVNMEVKP-QRTASVTFYA 608 (637)
T ss_pred EEEEEecCcEEEEEeccccee----ccccc----eeeeccCceEEEEcc-CCceEEEEEc
Confidence 37889999999 766532 23322 223444444444542 5555555544
No 98
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=20.90 E-value=82 Score=26.51 Aligned_cols=17 Identities=35% Similarity=0.788 Sum_probs=15.0
Q ss_pred ccCCCCCCCeeEEEEEe
Q 047904 81 TQCPIQTGQSCVYNFTI 97 (448)
Q Consensus 81 tq~pI~PG~~ftY~f~~ 97 (448)
..||+.+|+.++|.+.+
T Consensus 78 ~~CPl~~G~~~~~~~~~ 94 (127)
T cd00912 78 SFCPLRKGQQYSYAKTV 94 (127)
T ss_pred ccCCcCCCCEEEEEEEE
Confidence 36999999999999876
No 99
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=20.41 E-value=1e+02 Score=18.49 Aligned_cols=18 Identities=33% Similarity=0.526 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHhcCce
Q 047904 13 LKGVLCSFIALCLLAEPA 30 (448)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (448)
||-.++.+++++.++.++
T Consensus 7 mKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 577778778888777765
Done!