BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047906
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
           Member From Ricinus Communis, Target Efi-501866
          Length = 223

 Score = 35.4 bits (80), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 75  FPLVSAWMQEFLKVPVIKESLPPHEKLVTKMRGIREKYLGAA 116
           FP + AW + F + P+IKE+LP  +++    +  RE  L +A
Sbjct: 182 FPRLHAWTENFKEAPIIKENLPDRDQMTAFFKRRREMILASA 223


>pdb|3EET|A Chain A, Crystal Structure Of Putative Gntr-Family Transcriptional
           Regulator
 pdb|3EET|B Chain B, Crystal Structure Of Putative Gntr-Family Transcriptional
           Regulator
          Length = 272

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 86  LKVPVIKESLPPHEKLVTKMRGIREKY 112
           L+  ++  SLPPH +L ++ R IRE+Y
Sbjct: 38  LRKKIVDGSLPPHTRLPSQAR-IREEY 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,536,226
Number of Sequences: 62578
Number of extensions: 58092
Number of successful extensions: 153
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 4
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)