BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047907
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 28/141 (19%)
Query: 33 RNVEDSIDFYTKVLGFVLIERP--PAFDFA-------------------GAWLFSYGVGV 71
++ + S+DFYT+VLG L+++ PA F+ AW FS +
Sbjct: 40 KDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATL 99
Query: 72 HLVQS--NDEDKLSPPDSAHLDSMD-NHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQS 128
L + ++D+ + + D HI ++ + KR +EL VK++K+
Sbjct: 100 ELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMK 159
Query: 129 GNAIDQMFFDDPDGFMIEICN 149
G A F DPDG+ IEI N
Sbjct: 160 GLA----FIQDPDGYWIEILN 176
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 33 RNVEDSIDFYTKVLGFVLIER---------------------PPAFDFAGAWLFSYGVGV 71
++ + S+DFYT+VLG LI++ P D AW S +
Sbjct: 43 KDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATL 102
Query: 72 HLVQS--NDEDKLSPPDSAHLDSMD-NHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQS 128
L + ++D+ + + D HI ++ + KR +EL VK++K+
Sbjct: 103 ELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMK 162
Query: 129 GNAIDQMFFDDPDGFMIEICN 149
G A F DPDG+ IEI N
Sbjct: 163 GLA----FIQDPDGYWIEILN 179
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIER---------------------PPAFDFAGAW 63
L ++ + S+DFYT+VLG LI++ P D AW
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 64 LFSYGVGVHLVQS--NDEDKLSPPDSAHLDSMD-NHISFQCGNMEAIEKRLKELDVKYIK 120
S + L + ++D+ + + D HI ++ + KR +EL VK++K
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 150
Query: 121 RTVKDDQSGNAIDQMFFDDPDGFMIEICN 149
+ G A F DPDG+ IEI N
Sbjct: 151 KPDDGKMKGLA----FIQDPDGYWIEILN 175
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 33 RNVEDSIDFYTKVLGFVLIER---------------------PPAFDFAGAWLFSYGVGV 71
++ + S+DFYT+VLG LI++ P D AW S +
Sbjct: 39 KDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATL 98
Query: 72 HLVQS--NDEDKLSPPDSAHLDSMD-NHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQS 128
L + ++D+ + + D HI ++ + KR +EL VK++K+
Sbjct: 99 ELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMK 158
Query: 129 GNAIDQMFFDDPDGFMIEICN 149
G A F DPDG+ I+I N
Sbjct: 159 GLA----FIQDPDGYWIQILN 175
>pdb|3OAJ|A Chain A, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
pdb|3OAJ|B Chain B, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
Length = 335
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDK- 81
M ++H++ + + +++ DFY VLG L+++ FD G + HL N+ K
Sbjct: 7 MGIHHITAIVGHPQENTDFYAGVLGLRLVKQTVNFDDPGTY--------HLYFGNEGGKP 58
Query: 82 -----LSPPDSAHLDSM-DNHISFQC-----GNMEAIEKRLKELDVKYIKRTVKDDQSGN 130
P A + D + G M EKRL++ +V Y K +Q
Sbjct: 59 GTIITFFPWAGARQGVIGDGQVGVTSYVVPKGAMAFWEKRLEKFNVPYTKIERFGEQY-- 116
Query: 131 AIDQMFFDDPDGFMIEICNCE 151
+ FDDP G +EI E
Sbjct: 117 ----VEFDDPHGLHLEIVERE 133
>pdb|1NPB|A Chain A, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|B Chain B, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|C Chain C, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|D Chain D, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|E Chain E, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|F Chain F, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
Length = 141
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDK 81
L SLNH++ +++ S+ F+ ++LG L R GA+L + V L
Sbjct: 2 LQSLNHLTLAVSDLQKSVTFWHELLGLTLHARWN----TGAYLTCGDLWVCLSYDEARQY 57
Query: 82 LSPPDSAHLDSMDNHISFQCG--NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDD 139
+ P +S + H +F + E + +RL++ V K+ + S +F D
Sbjct: 58 VPPQESDY-----THYAFTVAEEDFEPLSQRLEQAGVTIWKQNKSEGAS------FYFLD 106
Query: 140 PDGFMIEI 147
PDG +E+
Sbjct: 107 PDGHKLEL 114
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERP--PAFDFAGAWLFSYGVGVHLVQSNDED 80
M L H +++ SIDFYTKVLG L+ P + ++ A++ G G ++ E
Sbjct: 1 MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFV---GYGPETEEAVIEL 57
Query: 81 KLS-PPDSAHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDD 139
+ D L + HI+ N +++++ + + R + G + F +D
Sbjct: 58 TYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTV-IAFVED 115
Query: 140 PDGFMIEI 147
PDG+ IE+
Sbjct: 116 PDGYKIEL 123
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 20/140 (14%)
Query: 20 LPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIE---RPPAFDF------AGAWLFSYGVG 70
+ L +++HV+ + + + S +FY LGF +I RP D+ L +G
Sbjct: 1 MKLKAVHHVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNK 60
Query: 71 VHLVQSNDEDKLSPPDSAHLDSMD---NHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQ 127
+ D + +PP+ H++F ++EA + L L ++ ++ DD
Sbjct: 61 L-----TDSNYCAPPERISWPREACGLRHLAFYVEDVEASRQELIALGIR-VEEVRYDDY 114
Query: 128 SGNAIDQMFFDDPDGFMIEI 147
+G + FF DPDG +E+
Sbjct: 115 TGKKM--AFFFDPDGLPLEL 132
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
Length = 148
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLI---ERPPAFDFAGAWLFSYGVGVHLVQSND 78
L +NH+ N+E SI+FY K+L L+ + FD G W + N
Sbjct: 3 LQGINHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLW----------IALNV 52
Query: 79 EDKLSPPDSAHLDSMDNHISFQCGN--MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMF 136
E+ + + + H +F N ++ +++ L + DV + +D++ + ++
Sbjct: 53 EEDIPRNE---IKQSYTHXAFTVTNEALDHLKEVLIQNDVNILPGRERDERDQRS---LY 106
Query: 137 FDDPDGFMIE 146
F DPDG E
Sbjct: 107 FTDPDGHKFE 116
>pdb|3GHJ|A Chain A, Crystal Structure From The Mobile Metagenome Of Halifax
Harbour Sewage Outfall: Integron Cassette Protein
Hfx_cass4
Length = 141
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 19/130 (14%)
Query: 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLF---SYGVGVHLVQSND 78
+ L V+ +N+E S FYT++LGF D A W F S G ++Q
Sbjct: 26 IKGLFEVAVKVKNLEKSSQFYTEILGF----EAGLLDSARRWNFLWVSGRAGXVVLQEEK 81
Query: 79 EDKLSPPDSAHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFD 138
E + H SF+ E IE K L+ K + +Q ++F
Sbjct: 82 E-----------NWQQQHFSFRVEKSE-IEPLKKALESKGVSVHGPVNQEWXQAVSLYFA 129
Query: 139 DPDGFMIEIC 148
DP+G +E
Sbjct: 130 DPNGHALEFT 139
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 25 LNHVSRLCRNVEDSIDFYTKVLGFVLI---ERPPAFDFAGAWLFSYGVGVHLVQSNDEDK 81
L+H+ ++++D+ FY+K+LG ++ E A F G F+ +H V E K
Sbjct: 28 LDHIVMTVKSIKDTTMFYSKILGMEVMTFKEDRKALCF-GDQKFN----LHEVGKEFEPK 82
Query: 82 LSPPDSAHLD-SMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDP 140
+ P LD + + +E + + LK DV + V + I ++F DP
Sbjct: 83 AAHPVPGSLDICLITEVP-----LEEMIQHLKACDVPIEEGPVPRTGAKGPIMSIYFRDP 137
Query: 141 DGFMIEICN 149
D +IE+ N
Sbjct: 138 DRNLIEVSN 146
>pdb|3LM4|A Chain A, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
From Rhodococcus Sp. (Strain Rha1)
pdb|3LM4|B Chain B, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
From Rhodococcus Sp. (Strain Rha1)
pdb|3LM4|C Chain C, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
From Rhodococcus Sp. (Strain Rha1)
pdb|3LM4|D Chain D, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
From Rhodococcus Sp. (Strain Rha1)
Length = 339
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 36 EDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDN 95
++++DF+TK LG + R G V+L D S + ++
Sbjct: 23 QETLDFFTKFLGXYVTHRE-------------GQSVYLRGYEDPYPWSLKITEAPEAGXG 69
Query: 96 HISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148
H + + + EA+E+R K L + T +DQ G + PDG +++
Sbjct: 70 HAAXRTSSPEALERRAKSLTDGNVDGTWSEDQFGYG-KTFEYQSPDGHNLQLL 121
>pdb|3EY7|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
pdb|3EY7|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
Length = 133
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 22 LMSLNHVSRLCRNVED---SIDFYTKVLGFVLIERPPAFDFAGAWLFSYG---VGVHLVQ 75
L ++H+ L V D + +FY KVLG + +F AG +G + +H +
Sbjct: 5 LXKISHLDHLVLTVADIPTTTNFYEKVLG----XKAVSFG-AGRIALEFGHQKINLHQLG 59
Query: 76 SNDEDKLSPPDSAHLDSMDNHISFQCGN-MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQ 134
+ E K + + S D + F + K +++ V + VK + AI
Sbjct: 60 NEFEPK---AQNVRVGSAD--LCFITDTVLSDAXKHVEDQGVTIXEGPVKRTGAQGAITS 114
Query: 135 MFFDDPDGFMIEICNCEN 152
+F DPDG +IE+ N
Sbjct: 115 FYFRDPDGNLIEVSTYSN 132
>pdb|3CT8|A Chain A, Crystal Structure Of A Putative Glyoxalase (Np_243026.1)
From Bacillus Halodurans At 2.10 A Resolution
Length = 146
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVG-VHLVQSNDEDKLS 83
L+HV ++E+SI F+ +LG + E ++ SY G +LV ED+
Sbjct: 21 LHHVEINVDHLEESIAFWDWLLGELGYEDYQSWSRGK----SYKHGKTYLVFVQTEDRFQ 76
Query: 84 PPDSAHLDSMDNHISFQCGNMEAIE---KRLKELDVKYIKRTVKDDQSGNAIDQMFFDDP 140
P + NH++F + E ++ ++LKE + G +F +DP
Sbjct: 77 TPTFHRKRTGLNHLAFHAASREKVDELTQKLKERGDPILYEDRHPFAGGPNHYAVFCEDP 136
Query: 141 DGFMIEIC 148
+ +EI
Sbjct: 137 NRIKVEIV 144
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 19/137 (13%)
Query: 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDED- 80
L LNHV+ ++E + FY +LG + E P L +GV V V +
Sbjct: 3 LGRLNHVAIAVPDLEKAAAFYKNILGAQVSEAVP--------LPEHGVSVVFVNLGNTKM 54
Query: 81 ------KLSPPDSAHLDSMD----NHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGN 130
L P + L +HI + N+ A LK+ ++ + VK G
Sbjct: 55 ELLHPLGLDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGK 114
Query: 131 AIDQMFFDDPDGFMIEI 147
+ + D G ++E+
Sbjct: 115 PVIFLHPKDCGGVLVEL 131
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/135 (19%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFA--------GAWLFSYGVGVHLVQS 76
++HV+ C + +++ +Y + G+ + R + A L + V ++
Sbjct: 10 IDHVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAP 69
Query: 77 -NDEDKLSPPDSAHLDSMD-NHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQ 134
NDE ++ + H +H++++ +++A+ L+E V+ + K GN I+
Sbjct: 70 LNDESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINF 129
Query: 135 MFFDDPDGFMIEICN 149
M G +IE+
Sbjct: 130 MHPKSGKGVLIELTQ 144
>pdb|2AVG|A Chain A, Nmr Structure Of Cc1 Domain From Human Cardiac Myosin
Binding Protein C
Length = 120
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 34 NVEDSIDFYTKVLGFVLIERPPAFDFAGAWL-FSYGVGVHLVQSNDEDKLSPPDSAHLDS 92
V SI F +V G L++ P F G W+ S VG HL + D+ S L
Sbjct: 27 TVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHI 86
Query: 93 MDNHISFQCG 102
D +F G
Sbjct: 87 TDAQPAFTGG 96
>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
Length = 133
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 123 VKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152
VK + AI +F DPDG +IE+ N
Sbjct: 103 VKRTGAQGAITSFYFRDPDGNLIEVSTYSN 132
>pdb|3CX2|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Isoform Of
Myosin Binding Protein-C At 1.3a
pdb|2V6H|A Chain A, Crystal Structure Of The C1 Domain Of Cardiac Myosin
Binding Protein-C
Length = 108
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 34 NVEDSIDFYTKVLGFVLIERPPAFDFAGAWL-FSYGVGVHLVQSNDEDKLS 83
V SI F +V G L++ P F G W+ S VG HL + D+ S
Sbjct: 17 TVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 16/130 (12%)
Query: 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFA---GAWLF-SYGVGVHLVQSNDED 80
++H+ ++ +I FY +VLGF A F A +F + + +H + E
Sbjct: 24 IDHLVLTVSDISTTIRFYEEVLGF------SAVTFKQNRKALIFGAQKINLHQQEXEFEP 77
Query: 81 KLSPPDSAHLDSMDNHISFQCGN-MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDD 139
K S P D + F + + + + + ++ V+ + I ++ D
Sbjct: 78 KASRPTPGSAD-----LCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIXSIYIRD 132
Query: 140 PDGFMIEICN 149
PDG +IEI
Sbjct: 133 PDGNLIEISQ 142
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 24 SLNHVSRLCRNVEDSIDFYTKVLGFVLI---ERPPAFDFAGAWLFSYGVGVHLVQSNDED 80
++HV+ N + + +FY + LGF ++ RP D +G ++ D
Sbjct: 5 EIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIK----LDLKLGSQELEIFISD 60
Query: 81 KLSPPDSAHLDSMD-NHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDD 139
+ P ++ +++ H++F+ ++E + L E ++ V DD +G FF D
Sbjct: 61 QF-PARPSYPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRV-DDFTGKK--XTFFFD 116
Query: 140 PDGFMIEI 147
PDG +E+
Sbjct: 117 PDGLPLEL 124
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 16/130 (12%)
Query: 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFA---GAWLF-SYGVGVHLVQSNDED 80
++H+ ++ +I FY +VLGF A F A +F + + +H + E
Sbjct: 24 IDHLVLTVSDISTTIRFYEEVLGF------SAVTFKQNRKALIFGAQKINLHQQEMEFEP 77
Query: 81 KLSPPDSAHLDSMDNHISFQCGN-MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDD 139
K S P D + F + + + + + ++ V+ + I ++ D
Sbjct: 78 KASRPTPGSAD-----LCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRD 132
Query: 140 PDGFMIEICN 149
PDG +IEI
Sbjct: 133 PDGNLIEISQ 142
>pdb|4GZV|A Chain A, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|B Chain B, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|C Chain C, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|D Chain D, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|E Chain E, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|F Chain F, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|G Chain G, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|H Chain H, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
Length = 142
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 68 GVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQ 127
G G + ++D K S + HL +DN + +E +K+ D ++K +K D
Sbjct: 62 GYGTYKQLTDDSYKESIEKNIHLPXLDNQDNI-------LEFEIKDNDYLHLKYFIKSDL 114
Query: 128 SGNAIDQMFFD 138
+GN ++ +++
Sbjct: 115 NGNELNTWYYE 125
>pdb|1AKR|A Chain A, G61a Oxidized Flavodoxin Mutant
Length = 147
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 94 DNHISFQCGNMEAIEKRLKELDVKYIK---------RTVKDDQSGNAID 133
D+ + CG ++AIE++LK L + ++ R +DD G A D
Sbjct: 94 DSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHD 142
>pdb|1AZL|A Chain A, G61v Flavodoxin Mutant From Desulfovibrio Vulgaris
Length = 147
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 94 DNHISFQCGNMEAIEKRLKELDVKYIK---------RTVKDDQSGNAID 133
D+ + CG ++AIE++LK L + ++ R +DD G A D
Sbjct: 94 DSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHD 142
>pdb|1AKW|A Chain A, G61l Oxidized Flavodoxin Mutant
Length = 147
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 94 DNHISFQCGNMEAIEKRLKELDVKYIK---------RTVKDDQSGNAID 133
D+ + CG ++AIE++LK L + ++ R +DD G A D
Sbjct: 94 DSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHD 142
>pdb|1FX1|A Chain A, A Crystallographic Structural Study Of The Oxidation
States Of Desulfovibrio Vulgaris Flavodoxin
Length = 148
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 94 DNHISFQCGNMEAIEKRLKELDVKYIK---------RTVKDDQSGNAID 133
D+ + CG ++AIE++LK L + ++ R +DD G A D
Sbjct: 95 DSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHD 143
>pdb|1BU5|A Chain A, X-Ray Crystal Structure Of The Desulfovibrio Vulgaris
(Hildenborough) Apoflavodoxin-Riboflavin Complex
pdb|1BU5|B Chain B, X-Ray Crystal Structure Of The Desulfovibrio Vulgaris
(Hildenborough) Apoflavodoxin-Riboflavin Complex
Length = 147
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 94 DNHISFQCGNMEAIEKRLKELDVKYIK---------RTVKDDQSGNAID 133
D+ + CG ++AIE++LK L + ++ R +DD G A D
Sbjct: 94 DSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHD 142
>pdb|1AKT|A Chain A, G61n Oxidized Flavodoxin Mutant
Length = 147
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 94 DNHISFQCGNMEAIEKRLKELDVKYIK---------RTVKDDQSGNAID 133
D+ + CG ++AIE++LK L + ++ R +DD G A D
Sbjct: 94 DSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHD 142
>pdb|3HPV|A Chain A, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|B Chain B, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|C Chain C, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|D Chain D, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPY|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HQ0|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
Length = 309
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIER---PPAFDFAGAWL 64
+ L+H N+ + +T+VLGF L+ER P G WL
Sbjct: 150 IQLDHCLLYGPNIAEVQKIFTEVLGFYLVERVLSPDGDSDMGIWL 194
>pdb|1J9G|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D.
Vulgaris S64c Mutant, Monomer Oxidised, At 2.4 Angstrom
Resolution
Length = 147
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 94 DNHISFQCGNMEAIEKRLKELDVKYIK---------RTVKDDQSGNAID 133
D+ + CG ++AIE++LK L + ++ R +DD G A D
Sbjct: 94 DSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHD 142
>pdb|1J9E|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D.
Vulgaris S35c Mutant At 1.44 Angstrom Resolution
pdb|1XT6|A Chain A, S35c Flavodoxin Mutant In The Semiquinone State
Length = 147
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 94 DNHISFQCGNMEAIEKRLKELDVKYIK---------RTVKDDQSGNAID 133
D+ + CG ++AIE++LK L + ++ R +DD G A D
Sbjct: 94 DSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHD 142
>pdb|1J8Q|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D.
Vulgaris Wild-Type At 1.35 Angstrom Resolution
pdb|2FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
pdb|3FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
pdb|4FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
pdb|5FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
Length = 147
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 94 DNHISFQCGNMEAIEKRLKELDVKYIK---------RTVKDDQSGNAID 133
D+ + CG ++AIE++LK L + ++ R +DD G A D
Sbjct: 94 DSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHD 142
>pdb|1WSB|A Chain A, Flavodoxin Mutant- S64c
pdb|1WSW|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin
Mutant S64c, Dimer, Semiquinone State
pdb|1XYV|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin
Mutant S64c, Monomer, Semiquinone State
pdb|1XYY|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin
Mutant S64c, Homodimer, Oxidised State
Length = 148
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 94 DNHISFQCGNMEAIEKRLKELDVKYIK---------RTVKDDQSGNAID 133
D+ + CG ++AIE++LK L + ++ R +DD G A D
Sbjct: 95 DSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHD 143
>pdb|1X6M|A Chain A, Crystal Structure Of The Glutathione-dependent
Formaldehyde-activating Enzyme (gfa)
pdb|1X6M|B Chain B, Crystal Structure Of The Glutathione-dependent
Formaldehyde-activating Enzyme (gfa)
pdb|1X6M|C Chain C, Crystal Structure Of The Glutathione-dependent
Formaldehyde-activating Enzyme (gfa)
pdb|1X6M|D Chain D, Crystal Structure Of The Glutathione-dependent
Formaldehyde-activating Enzyme (gfa)
pdb|1XA8|A Chain A, Crystal Structure Analysis Of Glutathione-Dependent
Formaldehyde- Activating Enzyme (Gfa)
pdb|1XA8|B Chain B, Crystal Structure Analysis Of Glutathione-Dependent
Formaldehyde- Activating Enzyme (Gfa)
pdb|1XA8|C Chain C, Crystal Structure Analysis Of Glutathione-Dependent
Formaldehyde- Activating Enzyme (Gfa)
pdb|1XA8|D Chain D, Crystal Structure Analysis Of Glutathione-Dependent
Formaldehyde- Activating Enzyme (Gfa)
Length = 196
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 67 YGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNMEAIEKRLKELDVK 117
YG+ + +DED S P+ A S MEAI RL+EL ++
Sbjct: 120 YGLDFVHTELSDEDGWSAPEFAAFVSSIIESGVDPSRMEAIRARLRELGLE 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,394,867
Number of Sequences: 62578
Number of extensions: 167706
Number of successful extensions: 441
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 39
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)