Query 047907
Match_columns 153
No_of_seqs 131 out of 1687
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 2.2E-23 4.7E-28 133.7 15.4 125 22-150 1-141 (142)
2 PRK11478 putative lyase; Provi 99.9 3.1E-23 6.7E-28 130.9 15.6 124 20-149 2-128 (129)
3 cd08342 HPPD_N_like N-terminal 99.9 8.4E-24 1.8E-28 134.8 13.0 125 25-152 1-125 (136)
4 TIGR03645 glyox_marine lactoyl 99.9 1.2E-22 2.6E-27 133.0 15.4 128 23-151 3-152 (162)
5 PLN03042 Lactoylglutathione ly 99.9 2.6E-22 5.5E-27 133.3 16.9 129 21-153 24-177 (185)
6 PLN02367 lactoylglutathione ly 99.9 2.1E-22 4.5E-27 136.5 16.4 128 21-152 72-224 (233)
7 cd07253 Glo_EDI_BRP_like_2 Thi 99.9 4.9E-22 1.1E-26 124.3 15.3 124 22-150 1-125 (125)
8 cd07243 2_3_CTD_C C-terminal d 99.9 6.4E-22 1.4E-26 127.1 15.0 117 20-149 2-124 (143)
9 TIGR03081 metmalonyl_epim meth 99.9 9.9E-23 2.1E-27 128.2 10.5 124 24-149 1-128 (128)
10 cd08352 Glo_EDI_BRP_like_1 Thi 99.9 6.8E-22 1.5E-26 123.7 14.2 121 23-149 2-125 (125)
11 PRK04101 fosfomycin resistance 99.9 8.2E-22 1.8E-26 126.1 14.7 117 21-150 1-119 (139)
12 cd08364 FosX FosX, a fosfomyci 99.9 1.4E-21 3.1E-26 123.8 14.4 117 21-150 1-122 (131)
13 cd07241 Glo_EDI_BRP_like_3 Thi 99.9 1.6E-21 3.4E-26 122.1 13.9 119 24-148 1-125 (125)
14 cd07242 Glo_EDI_BRP_like_6 Thi 99.9 5.6E-21 1.2E-25 120.4 15.4 121 24-150 1-128 (128)
15 cd09011 Glo_EDI_BRP_like_23 Th 99.9 3.5E-21 7.5E-26 120.2 13.9 118 23-150 1-119 (120)
16 TIGR00068 glyox_I lactoylgluta 99.9 3.9E-21 8.5E-26 124.4 14.0 131 17-152 10-143 (150)
17 cd07265 2_3_CTD_N N-terminal d 99.9 3.2E-21 6.8E-26 120.7 12.8 115 22-152 2-121 (122)
18 cd08363 FosB FosB, a fosfomyci 99.9 3.9E-21 8.5E-26 121.8 13.0 114 25-151 1-116 (131)
19 cd07245 Glo_EDI_BRP_like_9 Thi 99.9 4.1E-21 8.9E-26 118.0 12.8 113 25-147 1-114 (114)
20 cd07233 Glyoxalase_I Glyoxalas 99.9 8.1E-21 1.7E-25 118.4 14.2 115 25-148 1-121 (121)
21 PRK06724 hypothetical protein; 99.9 8.9E-21 1.9E-25 119.5 14.4 116 21-152 4-125 (128)
22 cd07252 BphC1-RGP6_N_like N-te 99.9 7.8E-21 1.7E-25 118.6 13.4 114 23-151 1-118 (120)
23 cd07257 THT_oxygenase_C The C- 99.9 2.7E-21 6E-26 125.5 11.4 119 24-150 1-125 (153)
24 cd08361 PpCmtC_N N-terminal do 99.9 1.2E-20 2.5E-25 118.5 13.9 115 20-151 2-120 (124)
25 cd08351 ChaP_like ChaP, an enz 99.9 1.6E-20 3.6E-25 117.6 14.2 112 22-151 2-122 (123)
26 cd08360 MhqB_like_C C-terminal 99.9 1.9E-20 4.1E-25 119.1 14.5 112 23-150 2-120 (134)
27 cd07267 THT_Oxygenase_N N-term 99.9 2.1E-20 4.6E-25 115.5 14.3 110 22-150 1-110 (113)
28 cd08347 PcpA_C_like C-terminal 99.9 2E-20 4.3E-25 121.9 14.4 115 24-151 1-121 (157)
29 cd07247 SgaA_N_like N-terminal 99.9 3.3E-20 7.1E-25 114.6 14.0 113 25-149 1-114 (114)
30 cd09013 BphC-JF8_N_like N-term 99.9 2.8E-20 6.1E-25 116.2 13.8 113 20-150 2-118 (121)
31 cd07237 BphC1-RGP6_C_like C-te 99.9 1.8E-20 4E-25 121.8 13.3 116 21-150 6-131 (154)
32 cd07263 Glo_EDI_BRP_like_16 Th 99.9 4.4E-20 9.5E-25 114.4 14.4 115 27-149 1-119 (119)
33 cd07255 Glo_EDI_BRP_like_12 Th 99.9 7.7E-20 1.7E-24 114.7 15.6 115 23-151 1-120 (125)
34 cd07262 Glo_EDI_BRP_like_19 Th 99.9 3.5E-20 7.6E-25 116.0 13.8 115 25-149 1-123 (123)
35 PLN02300 lactoylglutathione ly 99.9 6.5E-20 1.4E-24 130.3 16.3 126 18-151 18-149 (286)
36 cd08362 BphC5-RrK37_N_like N-t 99.9 4.8E-20 1E-24 114.8 13.8 112 23-150 2-117 (120)
37 cd08359 Glo_EDI_BRP_like_22 Th 99.9 7.4E-20 1.6E-24 113.8 14.5 114 27-149 4-119 (119)
38 cd07249 MMCE Methylmalonyl-CoA 99.9 1.7E-20 3.8E-25 117.8 11.7 123 25-149 1-128 (128)
39 cd09014 BphC-JF8_C_like C-term 99.9 7.7E-20 1.7E-24 120.2 15.0 122 19-150 1-127 (166)
40 cd07264 Glo_EDI_BRP_like_15 Th 99.9 5.1E-20 1.1E-24 115.4 13.4 121 25-150 1-125 (125)
41 PRK10291 glyoxalase I; Provisi 99.9 3.6E-20 7.7E-25 117.0 12.4 116 29-152 1-122 (129)
42 cd07240 ED_TypeI_classII_N N-t 99.9 7.6E-20 1.6E-24 113.3 13.7 110 23-150 1-114 (117)
43 cd07239 BphC5-RK37_C_like C-te 99.8 9.9E-20 2.1E-24 117.1 14.3 110 23-150 3-117 (144)
44 cd07266 HPCD_N_class_II N-term 99.8 3.6E-20 7.8E-25 115.6 11.7 113 21-150 1-118 (121)
45 cd08357 Glo_EDI_BRP_like_18 Th 99.8 1.1E-19 2.3E-24 113.9 13.8 120 27-150 2-125 (125)
46 cd08345 Fosfomycin_RP Fosfomyc 99.8 5.2E-20 1.1E-24 113.5 12.1 109 27-150 1-111 (113)
47 cd08355 Glo_EDI_BRP_like_14 Th 99.8 3.7E-19 8.1E-24 111.2 16.0 118 28-150 3-122 (122)
48 cd07244 FosA FosA, a Fosfomyci 99.8 8.4E-20 1.8E-24 114.1 12.5 108 24-150 1-110 (121)
49 cd08354 Glo_EDI_BRP_like_13 Th 99.8 2.6E-19 5.7E-24 111.7 14.6 119 25-150 1-122 (122)
50 cd07256 HPCD_C_class_II C-term 99.8 1.2E-19 2.7E-24 118.7 13.6 116 22-150 1-123 (161)
51 PF00903 Glyoxalase: Glyoxalas 99.8 3.8E-20 8.3E-25 116.0 10.6 121 24-147 1-128 (128)
52 cd07254 Glo_EDI_BRP_like_20 Th 99.8 3.3E-19 7.1E-24 111.1 14.5 113 26-151 3-118 (120)
53 cd08346 PcpA_N_like N-terminal 99.8 1.2E-19 2.7E-24 113.6 12.5 116 24-148 1-126 (126)
54 cd07258 PpCmtC_C C-terminal do 99.8 2.7E-19 5.9E-24 114.6 13.1 110 26-150 1-114 (141)
55 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 9.2E-19 2E-23 109.1 15.2 115 28-149 5-121 (122)
56 cd08348 BphC2-C3-RGP6_C_like T 99.8 7.4E-19 1.6E-23 111.6 14.9 115 24-151 1-121 (134)
57 cd07235 MRD Mitomycin C resist 99.8 3.4E-19 7.3E-24 111.4 13.0 118 25-149 1-122 (122)
58 cd08343 ED_TypeI_classII_C C-t 99.8 9E-19 1.9E-23 110.9 14.4 114 26-151 1-118 (131)
59 cd09012 Glo_EDI_BRP_like_24 Th 99.8 4.1E-19 8.9E-24 111.4 12.7 117 26-149 2-123 (124)
60 cd08349 BLMA_like Bleomycin bi 99.8 1.7E-18 3.7E-23 106.4 14.3 109 29-149 3-112 (112)
61 PF12681 Glyoxalase_2: Glyoxal 99.8 5.7E-19 1.2E-23 107.9 11.9 104 30-148 1-108 (108)
62 cd08344 MhqB_like_N N-terminal 99.8 1.3E-18 2.7E-23 107.4 13.3 108 23-152 1-111 (112)
63 cd07261 Glo_EDI_BRP_like_11 Th 99.8 1.3E-18 2.8E-23 107.4 13.3 109 28-149 2-114 (114)
64 TIGR03211 catechol_2_3 catecho 99.8 8.2E-19 1.8E-23 125.6 14.0 121 17-149 138-264 (303)
65 cd08350 BLMT_like BLMT, a bleo 99.8 1.9E-18 4.1E-23 107.8 13.7 109 27-150 5-119 (120)
66 cd07238 Glo_EDI_BRP_like_5 Thi 99.8 3.1E-18 6.6E-23 105.5 14.1 107 27-151 3-112 (112)
67 cd06587 Glo_EDI_BRP_like This 99.8 1.7E-18 3.7E-23 105.5 12.7 112 27-147 1-112 (112)
68 cd08356 Glo_EDI_BRP_like_17 Th 99.8 2.8E-18 6.2E-23 106.0 12.5 104 28-149 5-113 (113)
69 cd07251 Glo_EDI_BRP_like_10 Th 99.8 3.7E-18 8E-23 106.2 12.8 116 28-149 2-120 (121)
70 cd08358 Glo_EDI_BRP_like_21 Th 99.8 8.2E-18 1.8E-22 105.3 14.1 108 24-149 2-126 (127)
71 TIGR03213 23dbph12diox 2,3-dih 99.8 8.9E-18 1.9E-22 119.4 14.1 116 22-150 140-263 (286)
72 TIGR03213 23dbph12diox 2,3-dih 99.8 8.3E-18 1.8E-22 119.5 13.1 115 22-150 1-118 (286)
73 TIGR02295 HpaD 3,4-dihydroxyph 99.8 1.6E-17 3.6E-22 118.4 14.3 120 18-150 130-256 (294)
74 TIGR03211 catechol_2_3 catecho 99.8 8.8E-18 1.9E-22 120.3 12.8 111 22-151 2-119 (303)
75 TIGR02295 HpaD 3,4-dihydroxyph 99.8 3.8E-17 8.3E-22 116.5 13.3 110 21-150 1-115 (294)
76 KOG2944 Glyoxalase [Carbohydra 99.7 1.1E-16 2.3E-21 100.7 11.9 130 18-151 16-169 (170)
77 PLN02300 lactoylglutathione ly 99.7 2.2E-16 4.9E-21 112.2 15.0 125 20-152 150-280 (286)
78 COG3324 Predicted enzyme relat 99.7 1.7E-15 3.7E-20 93.7 13.4 121 19-151 4-126 (127)
79 COG3565 Predicted dioxygenase 99.7 2.6E-15 5.5E-20 89.5 11.5 124 23-152 3-131 (138)
80 PF13669 Glyoxalase_4: Glyoxal 99.7 9.1E-16 2E-20 94.2 9.1 96 26-125 1-100 (109)
81 COG3607 Predicted lactoylgluta 99.7 1.4E-15 3E-20 92.0 9.4 123 23-151 2-128 (133)
82 COG2514 Predicted ring-cleavag 99.6 6.4E-14 1.4E-18 95.9 13.2 118 21-151 7-127 (265)
83 cd07250 HPPD_C_like C-terminal 99.5 5E-14 1.1E-18 94.6 7.4 101 23-123 2-113 (191)
84 TIGR01263 4HPPD 4-hydroxypheny 99.5 1.6E-13 3.5E-18 100.2 9.7 134 17-150 151-310 (353)
85 TIGR01263 4HPPD 4-hydroxypheny 99.5 8.5E-13 1.8E-17 96.4 13.4 103 23-125 1-104 (353)
86 cd06588 PhnB_like Escherichia 99.5 4.4E-12 9.6E-17 79.9 13.6 109 29-148 4-128 (128)
87 COG0346 GloA Lactoylglutathion 99.4 8E-13 1.7E-17 82.7 8.2 122 23-149 1-138 (138)
88 COG2764 PhnB Uncharacterized p 99.4 4.8E-11 1E-15 75.1 13.1 115 29-151 5-132 (136)
89 PRK01037 trmD tRNA (guanine-N( 99.4 7.4E-12 1.6E-16 89.2 9.5 109 21-151 244-355 (357)
90 PLN02875 4-hydroxyphenylpyruva 99.3 7.9E-12 1.7E-16 91.6 7.3 131 20-150 176-340 (398)
91 KOG2943 Predicted glyoxalase [ 99.1 1E-09 2.2E-14 74.1 9.3 123 19-151 144-271 (299)
92 KOG0638 4-hydroxyphenylpyruvat 99.1 1.1E-09 2.3E-14 76.8 8.5 122 21-142 14-140 (381)
93 KOG2943 Predicted glyoxalase [ 99.0 3.6E-09 7.8E-14 71.5 9.0 112 21-149 14-142 (299)
94 PLN02875 4-hydroxyphenylpyruva 99.0 1.4E-08 2.9E-13 74.8 11.7 126 25-150 1-151 (398)
95 COG2514 Predicted ring-cleavag 99.0 1.2E-08 2.6E-13 70.3 10.6 82 17-103 161-242 (265)
96 PF14696 Glyoxalase_5: Hydroxy 99.0 9.4E-09 2E-13 65.1 8.8 125 17-150 2-126 (139)
97 PF14506 CppA_N: CppA N-termin 98.9 1.5E-07 3.2E-12 57.2 12.6 115 26-152 2-116 (125)
98 PRK10148 hypothetical protein; 98.9 3.9E-07 8.4E-12 58.7 14.6 111 29-151 6-142 (147)
99 PF13468 Glyoxalase_3: Glyoxal 98.8 4.7E-08 1E-12 64.8 8.4 115 25-140 1-123 (175)
100 COG3185 4-hydroxyphenylpyruvat 98.6 3.6E-08 7.7E-13 70.3 3.2 107 17-123 160-275 (363)
101 COG3185 4-hydroxyphenylpyruvat 98.1 9.9E-05 2.1E-09 53.1 10.4 120 15-141 13-141 (363)
102 KOG0638 4-hydroxyphenylpyruvat 98.1 3.9E-06 8.5E-11 59.3 3.4 133 18-150 172-337 (381)
103 PF15067 FAM124: FAM124 family 97.5 0.0016 3.5E-08 44.5 8.6 102 24-147 128-235 (236)
104 PF13669 Glyoxalase_4: Glyoxal 97.3 0.0015 3.1E-08 39.7 6.4 54 95-151 1-56 (109)
105 PF06983 3-dmu-9_3-mt: 3-demet 97.3 0.01 2.2E-07 36.7 10.1 94 33-148 11-116 (116)
106 PF14507 CppA_C: CppA C-termin 96.5 0.017 3.6E-07 34.6 5.9 92 23-145 4-98 (101)
107 cd08353 Glo_EDI_BRP_like_7 Thi 96.3 0.029 6.4E-07 35.4 6.8 58 93-150 3-69 (142)
108 TIGR03645 glyox_marine lactoyl 95.9 0.085 1.8E-06 34.4 7.6 60 92-151 3-78 (162)
109 PF13468 Glyoxalase_3: Glyoxal 95.4 0.019 4.2E-07 37.9 3.1 54 94-151 1-55 (175)
110 cd08346 PcpA_N_like N-terminal 95.4 0.22 4.7E-06 30.3 7.7 56 93-150 1-60 (126)
111 cd08352 Glo_EDI_BRP_like_1 Thi 95.2 0.27 5.7E-06 29.8 7.9 55 93-150 3-58 (125)
112 COG3865 Uncharacterized protei 95.2 0.45 9.8E-06 30.4 9.8 107 21-149 2-123 (151)
113 cd07250 HPPD_C_like C-terminal 94.5 0.3 6.4E-06 32.9 7.1 58 93-151 3-64 (191)
114 PF13670 PepSY_2: Peptidase pr 94.5 0.26 5.7E-06 28.3 5.9 44 103-150 30-73 (83)
115 KOG2944 Glyoxalase [Carbohydra 94.0 0.35 7.7E-06 31.4 6.1 51 23-74 114-166 (170)
116 cd07242 Glo_EDI_BRP_like_6 Thi 93.4 0.76 1.7E-05 28.1 7.0 51 93-151 1-55 (128)
117 cd07241 Glo_EDI_BRP_like_3 Thi 93.3 1 2.2E-05 27.3 7.4 54 94-150 2-56 (125)
118 cd04895 ACT_ACR_1 ACT domain-c 92.9 0.43 9.4E-06 26.8 4.7 42 104-146 15-56 (72)
119 cd08347 PcpA_C_like C-terminal 92.8 1.1 2.4E-05 29.0 7.3 51 93-150 1-53 (157)
120 cd06587 Glo_EDI_BRP_like This 92.7 1.1 2.3E-05 26.0 6.8 50 96-151 1-51 (112)
121 cd07237 BphC1-RGP6_C_like C-te 92.6 1.8 3.8E-05 27.9 8.0 30 92-121 8-38 (154)
122 cd07249 MMCE Methylmalonyl-CoA 92.4 0.76 1.6E-05 27.9 6.0 55 94-151 1-56 (128)
123 cd07233 Glyoxalase_I Glyoxalas 92.1 1.6 3.5E-05 26.2 7.2 54 94-150 1-58 (121)
124 cd07263 Glo_EDI_BRP_like_16 Th 92.0 1.5 3.3E-05 26.0 6.9 51 96-150 1-54 (119)
125 PRK11478 putative lyase; Provi 91.8 1.3 2.9E-05 27.0 6.6 29 92-120 5-34 (129)
126 PLN02367 lactoylglutathione ly 91.5 1.5 3.3E-05 30.6 7.0 54 23-77 168-223 (233)
127 cd07245 Glo_EDI_BRP_like_9 Thi 91.2 1.3 2.9E-05 25.9 6.0 51 94-150 1-52 (114)
128 cd08342 HPPD_N_like N-terminal 89.7 3.2 7E-05 25.9 7.0 28 94-121 1-29 (136)
129 cd07235 MRD Mitomycin C resist 89.7 1.9 4.2E-05 26.0 5.9 26 94-119 1-26 (122)
130 cd07255 Glo_EDI_BRP_like_12 Th 89.1 3.3 7.2E-05 25.0 6.7 29 93-121 2-31 (125)
131 PF00903 Glyoxalase: Glyoxalas 87.8 4.2 9.2E-05 24.4 7.4 55 93-149 1-56 (128)
132 cd08364 FosX FosX, a fosfomyci 87.5 4.9 0.00011 24.9 7.0 30 92-121 3-33 (131)
133 PLN03042 Lactoylglutathione ly 87.4 4.8 0.0001 27.0 6.9 54 23-77 120-175 (185)
134 cd04897 ACT_ACR_3 ACT domain-c 86.9 2.6 5.5E-05 23.9 4.6 42 104-146 15-56 (75)
135 PF02208 Sorb: Sorbin homologo 86.8 0.27 6E-06 24.6 0.5 27 20-46 7-33 (47)
136 cd04882 ACT_Bt0572_2 C-termina 86.7 1.7 3.6E-05 23.1 3.7 26 93-118 39-64 (65)
137 cd08358 Glo_EDI_BRP_like_21 Th 86.1 6.3 0.00014 24.7 7.9 30 93-122 2-32 (127)
138 TIGR03081 metmalonyl_epim meth 85.7 5.1 0.00011 24.2 6.1 53 94-150 2-55 (128)
139 cd08348 BphC2-C3-RGP6_C_like T 85.6 6.4 0.00014 24.2 7.1 29 93-121 1-30 (134)
140 cd08344 MhqB_like_N N-terminal 85.3 1.8 3.9E-05 25.9 3.8 28 93-120 2-29 (112)
141 COG4747 ACT domain-containing 84.2 7.8 0.00017 24.1 7.6 85 25-121 42-136 (142)
142 cd04883 ACT_AcuB C-terminal AC 83.3 3.2 7E-05 22.6 4.0 27 95-121 43-71 (72)
143 PF10922 DUF2745: Protein of u 83.1 5.1 0.00011 23.0 4.6 45 102-146 10-54 (85)
144 cd07267 THT_Oxygenase_N N-term 82.8 2.4 5.3E-05 25.4 3.6 28 93-120 3-30 (113)
145 cd08360 MhqB_like_C C-terminal 82.0 6.6 0.00014 24.4 5.5 31 22-52 60-92 (134)
146 cd07265 2_3_CTD_N N-terminal d 80.6 3.5 7.6E-05 24.9 3.8 30 92-121 3-33 (122)
147 cd04927 ACT_ACR-like_2 Second 80.3 8.2 0.00018 21.6 5.0 40 104-143 14-53 (76)
148 cd04900 ACT_UUR-like_1 ACT dom 80.1 5.7 0.00012 22.0 4.2 42 104-145 15-56 (73)
149 cd07240 ED_TypeI_classII_N N-t 79.8 10 0.00022 22.4 6.7 29 93-121 2-31 (117)
150 PHA00450 host dGTPase inhibito 78.5 10 0.00022 21.7 4.9 47 103-149 11-57 (85)
151 PRK10291 glyoxalase I; Provisi 77.8 13 0.00029 22.7 6.1 54 23-77 64-121 (129)
152 PF07063 DUF1338: Domain of un 76.4 3.8 8.3E-05 29.8 3.4 29 91-119 182-216 (302)
153 cd07253 Glo_EDI_BRP_like_2 Thi 76.4 5.9 0.00013 23.7 3.9 30 92-121 2-32 (125)
154 cd07257 THT_oxygenase_C The C- 75.8 6.7 0.00015 25.1 4.1 29 93-121 1-30 (153)
155 cd07256 HPCD_C_class_II C-term 75.7 19 0.0004 23.3 7.3 29 92-120 2-31 (161)
156 PF14044 NETI: NETI protein 75.1 10 0.00023 20.1 4.6 26 99-124 2-30 (57)
157 cd07252 BphC1-RGP6_N_like N-te 74.8 16 0.00034 22.0 6.2 28 93-120 2-30 (120)
158 cd07243 2_3_CTD_C C-terminal d 73.7 8 0.00017 24.5 4.1 30 92-121 5-35 (143)
159 cd08351 ChaP_like ChaP, an enz 73.1 18 0.00039 21.9 6.3 28 93-120 4-32 (123)
160 cd09014 BphC-JF8_C_like C-term 73.0 23 0.0005 23.0 7.0 30 92-121 5-35 (166)
161 cd09013 BphC-JF8_N_like N-term 73.0 18 0.00038 21.7 7.0 30 92-121 5-35 (121)
162 cd07262 Glo_EDI_BRP_like_19 Th 72.6 18 0.00039 21.7 6.5 28 94-121 1-32 (123)
163 cd08343 ED_TypeI_classII_C C-t 72.2 20 0.00043 22.0 7.2 27 95-121 1-28 (131)
164 PF12681 Glyoxalase_2: Glyoxal 72.2 17 0.00036 21.1 6.0 34 20-54 52-85 (108)
165 COG0346 GloA Lactoylglutathion 72.1 7.4 0.00016 23.1 3.6 30 93-122 2-32 (138)
166 PRK04101 fosfomycin resistance 71.7 22 0.00047 22.2 6.8 29 92-120 3-32 (139)
167 PRK06704 RNA polymerase factor 71.6 3.9 8.4E-05 28.5 2.4 42 97-145 182-223 (228)
168 cd07266 HPCD_N_class_II N-term 71.5 8.1 0.00018 23.2 3.6 29 92-120 3-32 (121)
169 cd07244 FosA FosA, a Fosfomyci 71.0 13 0.00028 22.5 4.5 28 93-120 1-29 (121)
170 COG1225 Bcp Peroxiredoxin [Pos 70.2 28 0.0006 22.8 6.7 58 92-149 63-137 (157)
171 KOG4657 Uncharacterized conser 69.9 4.1 8.9E-05 28.1 2.1 22 33-54 145-166 (246)
172 cd04906 ACT_ThrD-I_1 First of 69.3 11 0.00023 21.7 3.6 26 95-120 42-71 (85)
173 TIGR00068 glyox_I lactoylgluta 68.8 27 0.00058 22.1 6.5 30 23-53 85-114 (150)
174 PF06185 YecM: YecM protein; 68.5 33 0.00073 23.1 7.9 76 21-102 31-114 (185)
175 PF03975 CheD: CheD chemotacti 68.1 15 0.00033 22.5 4.2 40 102-145 64-103 (114)
176 PRK06724 hypothetical protein; 65.4 11 0.00024 23.4 3.4 28 92-119 6-37 (128)
177 cd04908 ACT_Bt0572_1 N-termina 63.7 20 0.00043 19.2 3.8 23 97-119 43-65 (66)
178 cd09012 Glo_EDI_BRP_like_24 Th 63.0 31 0.00067 20.8 6.1 25 95-119 2-26 (124)
179 PRK13490 chemoreceptor glutami 62.1 23 0.00049 23.3 4.4 40 102-145 112-151 (162)
180 PRK13495 chemoreceptor glutami 61.6 24 0.00052 23.2 4.4 40 102-145 105-144 (159)
181 cd07247 SgaA_N_like N-terminal 61.3 31 0.00068 20.2 6.8 28 95-122 2-30 (114)
182 PRK13498 chemoreceptor glutami 61.2 24 0.00052 23.4 4.4 42 100-145 113-154 (167)
183 PRK13494 chemoreceptor glutami 61.1 25 0.00054 23.2 4.4 40 102-145 114-153 (163)
184 cd04896 ACT_ACR-like_3 ACT dom 60.1 30 0.00064 19.6 4.2 39 105-145 15-55 (75)
185 PRK13497 chemoreceptor glutami 58.5 30 0.00064 23.4 4.5 40 102-145 112-151 (184)
186 PHA02754 hypothetical protein; 57.6 28 0.00061 18.6 4.2 44 105-152 21-64 (67)
187 PF07494 Reg_prop: Two compone 57.5 15 0.00033 15.5 2.1 12 134-145 8-19 (24)
188 cd04925 ACT_ACR_2 ACT domain-c 57.5 31 0.00068 19.0 4.3 40 104-144 14-54 (74)
189 cd07268 Glo_EDI_BRP_like_4 Thi 57.5 50 0.0011 21.4 10.1 72 25-101 2-80 (149)
190 TIGR00318 cyaB adenylyl cyclas 57.1 18 0.00039 23.9 3.4 23 97-119 6-28 (174)
191 PF02630 SCO1-SenC: SCO1/SenC; 56.7 8.7 0.00019 25.4 1.8 17 134-150 157-173 (174)
192 PRK11700 hypothetical protein; 56.5 60 0.0013 22.0 8.8 77 21-102 36-119 (187)
193 COG3349 Uncharacterized conser 56.3 27 0.00059 27.3 4.6 37 107-146 15-51 (485)
194 PRK03467 hypothetical protein; 56.3 52 0.0011 21.2 5.3 48 102-151 5-52 (144)
195 PRK13488 chemoreceptor glutami 56.2 34 0.00073 22.4 4.4 41 101-145 106-146 (157)
196 cd04885 ACT_ThrD-I Tandem C-te 55.4 17 0.00037 19.7 2.6 26 93-118 38-66 (68)
197 PRK13493 chemoreceptor glutami 54.9 33 0.00072 23.7 4.4 40 102-145 139-178 (213)
198 PF08445 FR47: FR47-like prote 54.6 35 0.00075 19.6 3.9 23 30-53 60-82 (86)
199 cd04928 ACT_TyrKc Uncharacteri 54.6 36 0.00078 18.8 4.7 40 104-143 15-54 (68)
200 PRK13487 chemoreceptor glutami 53.6 37 0.0008 23.3 4.4 41 101-145 126-166 (201)
201 PRK13491 chemoreceptor glutami 53.5 38 0.00083 23.2 4.4 40 102-145 115-154 (199)
202 COG3603 Uncharacterized conser 53.4 18 0.00039 22.5 2.6 25 95-119 103-127 (128)
203 cd07258 PpCmtC_C C-terminal do 52.7 26 0.00056 22.1 3.5 33 21-53 53-87 (141)
204 COG1724 Predicted RNA binding 51.4 41 0.00088 18.5 5.2 36 104-148 9-44 (66)
205 PLN02504 nitrilase 51.0 92 0.002 23.2 6.5 44 104-148 107-150 (346)
206 PRK11191 RNase E inhibitor pro 49.8 43 0.00093 21.5 4.0 27 94-120 35-62 (138)
207 PRK14707 hypothetical protein; 49.6 35 0.00076 31.9 4.6 45 103-148 2357-2404(2710)
208 COG2844 GlnD UTP:GlnB (protein 48.2 63 0.0014 27.2 5.6 54 93-146 683-740 (867)
209 PF03738 GSP_synth: Glutathion 46.9 26 0.00056 20.7 2.6 39 107-148 20-58 (97)
210 PRK13489 chemoreceptor glutami 46.6 55 0.0012 23.0 4.4 40 102-145 125-164 (233)
211 PF00379 Chitin_bind_4: Insect 46.3 41 0.0009 17.2 3.4 20 129-148 25-44 (52)
212 PF10706 Aminoglyc_resit: Amin 46.1 83 0.0018 20.9 4.9 41 97-147 47-87 (174)
213 PTZ00330 acetyltransferase; Pr 46.0 32 0.00069 21.3 3.1 26 25-53 116-141 (147)
214 cd07568 ML_beta-AS_like mammal 45.6 1.1E+02 0.0023 21.8 6.1 45 104-148 79-123 (287)
215 cd04909 ACT_PDH-BS C-terminal 45.4 23 0.00049 19.0 2.1 17 102-118 53-69 (69)
216 PF00583 Acetyltransf_1: Acety 44.8 28 0.00061 19.0 2.5 25 24-49 58-83 (83)
217 PF13508 Acetyltransf_7: Acety 43.8 21 0.00046 19.6 1.9 14 36-50 66-79 (79)
218 cd04926 ACT_ACR_4 C-terminal 43.7 56 0.0012 17.9 6.5 47 97-144 4-54 (72)
219 PRK09732 hypothetical protein; 43.2 86 0.0019 19.9 5.2 32 105-151 17-48 (134)
220 PF13176 TPR_7: Tetratricopept 42.7 21 0.00047 16.4 1.5 18 31-48 11-28 (36)
221 PF12687 DUF3801: Protein of u 41.8 1.1E+02 0.0023 21.1 5.2 48 92-141 32-79 (204)
222 cd04886 ACT_ThrD-II-like C-ter 41.7 54 0.0012 17.2 3.9 25 95-119 45-72 (73)
223 PF00795 CN_hydrolase: Carbon- 41.6 92 0.002 20.2 5.0 45 104-149 73-117 (186)
224 PRK10234 DNA-binding transcrip 41.2 55 0.0012 20.4 3.4 48 102-151 25-72 (118)
225 COG4004 Uncharacterized protei 41.2 76 0.0017 18.7 4.8 38 102-149 12-49 (96)
226 PRK09437 bcp thioredoxin-depen 41.0 92 0.002 19.7 6.2 57 93-149 64-137 (154)
227 PF00585 Thr_dehydrat_C: C-ter 40.4 24 0.00052 20.7 1.7 30 92-121 49-81 (91)
228 smart00459 Sorb Sorbin homolog 40.2 11 0.00025 19.3 0.3 18 29-46 16-36 (50)
229 COG1871 CheD Chemotaxis protei 37.8 99 0.0022 20.4 4.3 41 101-145 113-153 (164)
230 COG0456 RimI Acetyltransferase 37.8 56 0.0012 20.9 3.4 28 26-54 127-155 (177)
231 cd02966 TlpA_like_family TlpA- 37.6 81 0.0018 18.0 6.1 57 92-148 51-114 (116)
232 COG1791 Uncharacterized conser 37.5 98 0.0021 20.7 4.3 47 102-151 78-124 (181)
233 cd07583 nitrilase_5 Uncharacte 37.4 1.4E+02 0.003 20.7 6.3 45 104-148 63-107 (253)
234 KOG1494 NAD-dependent malate d 36.6 78 0.0017 23.2 4.0 75 28-121 171-245 (345)
235 cd07572 nit Nit1, Nit 2, and r 36.5 1.5E+02 0.0032 20.7 6.1 45 104-148 64-110 (265)
236 PF10023 DUF2265: Predicted am 36.4 88 0.0019 23.4 4.4 85 35-124 55-141 (337)
237 cd07581 nitrilase_3 Uncharacte 36.0 1.5E+02 0.0032 20.6 6.5 46 104-149 63-108 (255)
238 cd07582 nitrilase_4 Uncharacte 35.8 1.6E+02 0.0036 21.0 6.2 46 103-148 78-125 (294)
239 PRK10325 heat shock protein Gr 35.6 1.2E+02 0.0026 20.7 4.7 46 105-150 128-176 (197)
240 PRK14707 hypothetical protein; 35.6 72 0.0016 30.2 4.4 47 102-148 2587-2635(2710)
241 PF00578 AhpC-TSA: AhpC/TSA fa 35.5 97 0.0021 18.4 4.1 54 92-145 58-122 (124)
242 PF02952 Fucose_iso_C: L-fucos 34.6 65 0.0014 20.3 3.2 27 25-51 113-139 (142)
243 PRK10314 putative acyltransfer 34.6 44 0.00095 21.5 2.5 17 36-53 118-134 (153)
244 PF06877 RraB: Regulator of ri 34.4 48 0.001 19.6 2.5 27 95-121 28-55 (104)
245 PF04577 DUF563: Protein of un 34.2 1.2E+02 0.0026 20.1 4.7 50 102-151 119-183 (206)
246 CHL00193 ycf35 Ycf35; Provisio 33.9 1.2E+02 0.0027 19.1 6.4 52 99-150 9-62 (128)
247 PRK10146 aminoalkylphosphonic 33.9 44 0.00096 20.6 2.4 27 24-51 109-136 (144)
248 cd04899 ACT_ACR-UUR-like_2 C-t 33.9 78 0.0017 16.7 5.0 40 104-144 14-53 (70)
249 PRK03381 PII uridylyl-transfer 33.2 1E+02 0.0022 25.9 4.8 52 94-146 707-762 (774)
250 PRK10140 putative acetyltransf 33.1 86 0.0019 19.6 3.7 30 24-54 112-142 (162)
251 COG5397 Uncharacterized conser 33.0 54 0.0012 23.8 2.8 50 97-150 161-211 (349)
252 COG3042 Hlx Putative hemolysin 32.9 1E+02 0.0023 17.9 3.6 37 105-146 37-73 (85)
253 cd07573 CPA N-carbamoylputresc 32.8 1.8E+02 0.0039 20.6 6.2 44 105-148 69-112 (284)
254 PF04761 Phage_Treg: Lactococc 32.7 33 0.00071 17.6 1.2 14 35-48 15-28 (57)
255 PLN02798 nitrilase 32.5 1.9E+02 0.004 20.7 6.5 45 104-148 74-120 (286)
256 cd07569 DCase N-carbamyl-D-ami 32.2 1.9E+02 0.0042 20.8 5.7 46 103-148 76-124 (302)
257 PRK14163 heat shock protein Gr 32.2 1.7E+02 0.0037 20.3 5.0 46 105-150 121-169 (214)
258 TIGR02382 wecD_rffC TDP-D-fuco 32.1 54 0.0012 21.7 2.7 28 24-52 156-184 (191)
259 PHA00159 endonuclease I 32.0 1.3E+02 0.0028 19.4 4.0 50 98-147 14-66 (148)
260 PRK14150 heat shock protein Gr 31.2 1.7E+02 0.0036 20.0 4.8 46 105-150 127-175 (193)
261 PF13225 DUF4033: Domain of un 30.4 86 0.0019 18.3 2.9 18 38-55 49-66 (86)
262 TIGR03381 agmatine_aguB N-carb 30.1 2E+02 0.0043 20.2 6.3 45 104-149 68-112 (279)
263 PF12142 PPO1_DWL: Polyphenol 29.9 77 0.0017 16.7 2.4 16 134-149 11-26 (54)
264 TIGR00288 conserved hypothetic 29.6 1.3E+02 0.0028 19.9 3.9 31 92-122 104-136 (160)
265 COG0253 DapF Diaminopimelate e 29.6 1.1E+02 0.0023 22.2 3.9 55 92-150 153-207 (272)
266 PHA02097 hypothetical protein 29.4 65 0.0014 16.7 2.0 14 136-149 45-58 (59)
267 PRK14148 heat shock protein Gr 29.3 1.9E+02 0.0041 19.8 4.8 46 105-150 128-176 (195)
268 cd04907 ACT_ThrD-I_2 Second of 29.1 98 0.0021 17.6 3.0 28 94-121 42-71 (81)
269 PF09066 B2-adapt-app_C: Beta2 29.0 1.4E+02 0.0029 18.0 5.0 42 102-145 36-77 (114)
270 PF10033 ATG13: Autophagy-rela 28.8 1.7E+02 0.0037 20.4 4.7 55 95-150 37-101 (233)
271 PF03698 UPF0180: Uncharacteri 28.8 1.2E+02 0.0027 17.4 5.2 43 102-146 8-50 (80)
272 cd07564 nitrilases_CHs Nitrila 28.8 2.2E+02 0.0049 20.4 6.1 44 104-148 78-121 (297)
273 PF13420 Acetyltransf_4: Acety 27.9 65 0.0014 20.1 2.4 31 23-54 109-140 (155)
274 PF13673 Acetyltransf_10: Acet 27.8 54 0.0012 19.2 1.9 18 30-48 100-117 (117)
275 TIGR00116 tsf translation elon 27.6 79 0.0017 23.1 3.0 50 102-152 31-80 (290)
276 smart00671 SEL1 Sel1-like repe 27.4 59 0.0013 14.4 1.7 14 32-45 18-31 (36)
277 COG3254 Uncharacterized conser 27.2 1.1E+02 0.0025 18.5 3.1 23 129-151 37-59 (105)
278 PRK14157 heat shock protein Gr 27.0 2.3E+02 0.0049 20.0 5.1 46 105-150 158-206 (227)
279 cd03017 PRX_BCP Peroxiredoxin 26.9 1.6E+02 0.0034 18.0 6.0 17 133-149 111-127 (140)
280 PRK09491 rimI ribosomal-protei 26.9 1.1E+02 0.0025 18.9 3.4 29 24-53 96-125 (146)
281 PRK14147 heat shock protein Gr 26.8 2E+02 0.0043 19.2 4.8 45 106-150 105-152 (172)
282 PRK03094 hypothetical protein; 26.8 1.4E+02 0.0029 17.2 5.3 43 102-146 8-50 (80)
283 COG1218 CysQ 3'-Phosphoadenosi 26.7 1.2E+02 0.0027 21.9 3.8 37 107-143 54-95 (276)
284 PRK10975 TDP-fucosamine acetyl 26.4 1.2E+02 0.0026 20.1 3.6 30 23-53 158-188 (194)
285 PHA02503 putative transcriptio 26.3 49 0.0011 16.9 1.2 12 35-46 15-26 (57)
286 COG1759 5-formaminoimidazole-4 26.2 1.3E+02 0.0027 22.5 3.7 60 92-151 163-226 (361)
287 COG3355 Predicted transcriptio 26.2 1.2E+02 0.0027 19.1 3.3 36 102-140 57-93 (126)
288 PRK04374 PII uridylyl-transfer 26.1 2.9E+02 0.0064 23.7 6.3 52 93-145 795-850 (869)
289 cd07587 ML_beta-AS mammalian-l 26.0 2.9E+02 0.0063 20.8 6.3 45 104-148 140-186 (363)
290 PRK14146 heat shock protein Gr 26.0 2.3E+02 0.005 19.7 4.9 46 105-150 142-190 (215)
291 cd01205 WASP WASP-type EVH1 do 26.0 1.1E+02 0.0024 18.6 3.0 21 26-46 82-102 (105)
292 PF06923 GutM: Glucitol operon 25.9 1.6E+02 0.0035 17.9 5.2 48 102-151 24-71 (109)
293 PRK13688 hypothetical protein; 25.8 67 0.0015 20.8 2.2 17 37-54 118-134 (156)
294 cd04929 ACT_TPH ACT domain of 25.7 1.3E+02 0.0028 16.7 4.0 41 103-144 13-53 (74)
295 PF04659 Arch_fla_DE: Archaeal 25.6 59 0.0013 19.5 1.7 18 31-49 33-50 (99)
296 PRK14153 heat shock protein Gr 25.6 2.3E+02 0.0049 19.4 5.0 45 106-150 122-169 (194)
297 PF08285 DPM3: Dolichol-phosph 25.4 46 0.001 19.6 1.2 17 102-118 75-91 (91)
298 PRK14140 heat shock protein Gr 25.0 2.2E+02 0.0047 19.4 4.5 46 105-150 125-173 (191)
299 KOG2792 Putative cytochrome C 24.9 45 0.00098 23.9 1.3 15 134-148 244-258 (280)
300 PRK10514 putative acetyltransf 24.9 68 0.0015 19.8 2.1 19 35-54 109-127 (145)
301 cd07584 nitrilase_6 Uncharacte 24.7 2.4E+02 0.0053 19.5 6.5 46 104-149 67-113 (258)
302 COG2344 AT-rich DNA-binding pr 24.5 1.8E+02 0.0039 20.0 3.9 37 102-148 157-193 (211)
303 PF02829 3H: 3H domain; Inter 24.5 1.6E+02 0.0035 17.6 3.4 39 101-139 7-45 (98)
304 PRK12332 tsf elongation factor 24.5 90 0.002 21.3 2.7 47 102-150 31-80 (198)
305 PRK13577 diaminopimelate epime 24.5 2E+02 0.0044 20.6 4.6 55 92-150 156-210 (281)
306 PRK05007 PII uridylyl-transfer 24.4 1.6E+02 0.0035 25.2 4.6 42 104-145 715-756 (884)
307 PF11823 DUF3343: Protein of u 24.3 1.4E+02 0.0029 16.4 3.9 23 97-119 43-67 (73)
308 KOG1249 Predicted GTPases [Gen 24.3 80 0.0017 25.2 2.6 28 26-53 434-461 (572)
309 PRK09831 putative acyltransfer 24.3 86 0.0019 19.6 2.5 18 36-54 110-127 (147)
310 PRK10382 alkyl hydroperoxide r 24.2 2.3E+02 0.005 19.0 6.4 59 92-150 64-137 (187)
311 PF07566 DUF1543: Domain of Un 24.2 68 0.0015 16.6 1.6 23 94-116 5-28 (52)
312 PRK01759 glnD PII uridylyl-tra 24.0 1.7E+02 0.0037 25.0 4.6 52 94-146 783-838 (854)
313 PHA00212 putative transcriptio 23.9 57 0.0012 17.1 1.2 12 35-46 17-28 (63)
314 PF03979 Sigma70_r1_1: Sigma-7 23.9 28 0.00061 19.9 0.1 24 98-121 35-58 (82)
315 PF02222 ATP-grasp: ATP-grasp 23.9 2.3E+02 0.0049 18.8 4.5 10 134-143 80-89 (172)
316 PHA02117 glutathionylspermidin 23.9 2.3E+02 0.005 21.8 4.9 52 95-148 177-235 (397)
317 PF09633 DUF2023: Protein of u 23.9 1.8E+02 0.0038 17.6 4.7 31 93-123 13-46 (101)
318 TIGR01575 rimI ribosomal-prote 23.9 82 0.0018 18.7 2.3 29 25-54 88-117 (131)
319 PF07063 DUF1338: Domain of un 23.7 73 0.0016 23.4 2.2 30 22-52 182-217 (302)
320 PF04083 Abhydro_lipase: Parti 23.6 1.3E+02 0.0028 16.3 2.7 16 134-149 14-29 (63)
321 PF11782 DUF3319: Protein of u 23.1 60 0.0013 19.0 1.4 14 33-47 35-48 (88)
322 PF13721 SecD-TM1: SecD export 23.1 1.2E+02 0.0027 18.1 2.8 21 101-121 45-65 (101)
323 PF09383 NIL: NIL domain; Int 23.0 1.1E+02 0.0023 16.9 2.4 25 95-119 46-74 (76)
324 PRK14141 heat shock protein Gr 22.9 2.7E+02 0.0057 19.3 4.7 46 105-150 125-173 (209)
325 TIGR02540 gpx7 putative glutat 22.9 1.1E+02 0.0025 19.3 2.9 17 134-150 122-138 (153)
326 PF01025 GrpE: GrpE; InterPro 22.8 2.2E+02 0.0048 18.4 5.2 46 105-150 99-147 (165)
327 PRK01759 glnD PII uridylyl-tra 22.7 1.9E+02 0.0041 24.7 4.6 50 97-146 680-733 (854)
328 PF14085 DUF4265: Domain of un 22.6 1.7E+02 0.0037 17.9 3.5 19 103-121 66-84 (117)
329 cd07565 aliphatic_amidase alip 22.4 3E+02 0.0066 19.8 6.4 45 104-148 72-118 (291)
330 PRK13287 amiF formamidase; Pro 22.3 3.3E+02 0.0072 20.2 6.4 46 103-148 84-130 (333)
331 PF14133 DUF4300: Domain of un 22.3 1.8E+02 0.004 20.7 3.9 35 104-145 150-184 (250)
332 TIGR00546 lnt apolipoprotein N 22.2 2.9E+02 0.0062 20.8 5.2 44 105-148 221-266 (391)
333 PRK15130 spermidine N1-acetylt 22.0 1.9E+02 0.0042 18.7 3.9 31 23-54 115-146 (186)
334 PRK09377 tsf elongation factor 21.9 1.2E+02 0.0026 22.1 3.0 49 102-151 32-80 (290)
335 PF13756 Stimulus_sens_1: Stim 21.9 81 0.0018 19.2 1.9 12 135-146 21-32 (112)
336 PRK10629 EnvZ/OmpR regulon mod 21.8 1.4E+02 0.0029 18.9 2.9 20 102-121 50-69 (127)
337 cd07574 nitrilase_Rim1_like Un 21.8 3E+02 0.0064 19.4 5.4 40 105-144 75-114 (280)
338 PF08238 Sel1: Sel1 repeat; I 21.6 54 0.0012 14.9 0.9 12 34-45 23-34 (39)
339 PF15590 Imm15: Immunity prote 21.2 78 0.0017 17.6 1.5 17 135-151 27-44 (69)
340 PRK10562 putative acetyltransf 20.9 85 0.0018 19.5 1.9 20 34-54 107-126 (145)
341 KOG2465 Uncharacterized conser 20.9 86 0.0019 23.1 2.1 25 93-117 168-192 (390)
342 PF12512 DUF3717: Protein of u 20.6 33 0.00072 19.2 -0.0 16 29-44 3-18 (71)
343 cd07566 ScNTA1_like Saccharomy 20.6 3.4E+02 0.0074 19.7 6.0 44 105-148 72-117 (295)
344 COG1834 N-Dimethylarginine dim 20.5 2.2E+02 0.0047 20.6 4.0 36 102-141 38-73 (267)
345 PF00594 Gla: Vitamin K-depend 20.5 93 0.002 15.3 1.6 14 34-47 29-42 (42)
346 PRK03624 putative acetyltransf 20.5 1.1E+02 0.0025 18.3 2.5 27 25-52 102-129 (140)
347 PTZ00056 glutathione peroxidas 20.4 2.9E+02 0.0062 18.7 6.5 16 134-149 147-162 (199)
348 COG0077 PheA Prephenate dehydr 20.4 3.5E+02 0.0076 19.7 5.1 52 94-146 194-249 (279)
349 PHA02087 hypothetical protein 20.3 1.2E+02 0.0025 16.8 2.1 17 134-150 46-62 (83)
350 cd04904 ACT_AAAH ACT domain of 20.2 1.7E+02 0.0037 16.0 4.8 39 103-142 13-51 (74)
351 PF03778 DUF321: Protein of un 20.1 40 0.00086 13.8 0.2 13 40-52 2-14 (20)
352 PF09162 Tap-RNA_bind: Tap, RN 20.1 74 0.0016 18.7 1.4 34 96-149 46-79 (88)
No 1
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.92 E-value=2.2e-23 Score=133.74 Aligned_cols=125 Identities=17% Similarity=0.263 Sum_probs=89.3
Q ss_pred ceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCC-------------cceeeEE--ecCeEEEEeeecCCCCCCCC-
Q 047907 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFD-------------FAGAWLF--SYGVGVHLVQSNDEDKLSPP- 85 (153)
Q Consensus 22 ~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~~~~~~~~~~~- 85 (153)
+.+++||+|.|+|++++++||++ |||.+..+....+ ....++. .++..++|+....+.....+
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999999 9998865532110 0112222 23467888876544322211
Q ss_pred CCCCCCCCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 86 DSAHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 86 ~~~~~~~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
.....+.|+.||||.|+|+++++++|+++|+++..++... .+| .+.+||+||||++|||++.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~-~~~--~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQY-ENS--YRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceec-CCC--eEEEEEECCCCCEEEeeec
Confidence 1122346789999999999999999999999998755433 223 4479999999999999984
No 2
>PRK11478 putative lyase; Provisional
Probab=99.92 E-value=3.1e-23 Score=130.87 Aligned_cols=124 Identities=22% Similarity=0.309 Sum_probs=87.4
Q ss_pred CCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCC---CcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCce
Q 047907 20 LPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAF---DFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNH 96 (153)
Q Consensus 20 ~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h 96 (153)
|.+.+++|++|.|+|++++++||+++|||++..+.... .+...+...+...++++......... ......+..|
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~---~~~~~~g~~h 78 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERP---SRPEACGLRH 78 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCC---CCCCCCceeE
Confidence 56788999999999999999999999999986542111 11112222334567776644322111 1122356789
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 97 ISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 97 l~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++|.|+|+++++++|+++|+++...... ..+|. +++||+|||||.|||++
T Consensus 79 i~f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~--~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 79 LAFSVDDIDAAVAHLESHNVKCEAIRVD-PYTQK--RFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEEeCCHHHHHHHHHHcCCeeeccccC-CCCCC--EEEEEECCCCCEEEEEe
Confidence 9999999999999999999998643322 22344 37999999999999987
No 3
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.92 E-value=8.4e-24 Score=134.85 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=89.0
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCH
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNM 104 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di 104 (153)
++|++|.|+|++++++||+++|||++.......+.....+..++..+.+.................+++..|++|.|+|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~Dv 80 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVDDA 80 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeCCH
Confidence 58999999999999999999999999876542211223333444556555432221100000112236788999999999
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
++++++|+++|++++.++.. ..+|. +.++++||||++|||++.+.
T Consensus 81 da~~~~l~~~G~~v~~~p~~-~~~~~--~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 81 AAAYERAVARGAKPVQEPVE-EPGEL--KIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred HHHHHHHHHcCCeEccCcee-cCCeE--EEEEEeccCCcEEEEEecCC
Confidence 99999999999999987765 23343 47999999999999999653
No 4
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.91 E-value=1.2e-22 Score=133.02 Aligned_cols=128 Identities=20% Similarity=0.295 Sum_probs=88.3
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeC----CC----C------------CcceeeEEe-cCeEEEEeeecCCCC
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERP----PA----F------------DFAGAWLFS-YGVGVHLVQSNDEDK 81 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~----~~----~------------~~~~~~~~~-~~~~~~l~~~~~~~~ 81 (153)
.+++||+|.|+|+++|++||+++|||++..+. .. . .+...++.. ++..++++.......
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 57999999999999999999999999886421 00 0 011222222 245688888765332
Q ss_pred CCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHcCCeEEeec-cccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 82 LSPPDSAHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRT-VKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 82 ~~~~~~~~~~~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~-~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
.. ......+.|..|++|.|+|+++++++|+++|+++...+ ......+..++++||+|||||+|||++..
T Consensus 83 ~~-~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 83 PE-DNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CC-cccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 11 11112247899999999999999999999998764332 21112122356899999999999999864
No 5
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.91 E-value=2.6e-22 Score=133.26 Aligned_cols=129 Identities=21% Similarity=0.346 Sum_probs=91.5
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCC--CCCcceeeEE-------------------ecCeEEEEeeecCC
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPP--AFDFAGAWLF-------------------SYGVGVHLVQSNDE 79 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~-------------------~~~~~~~l~~~~~~ 79 (153)
.--++.|+.|.|.|+++|++||+++|||++..+.. ...+...++. ..+..++|+.....
T Consensus 24 ~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~ 103 (185)
T PLN03042 24 KGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGT 103 (185)
T ss_pred CCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCC
Confidence 34678999999999999999999999999977743 2222333322 12346888875442
Q ss_pred CCCC----CCCCCCCCCCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCCC
Q 047907 80 DKLS----PPDSAHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCENL 153 (153)
Q Consensus 80 ~~~~----~~~~~~~~~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~~ 153 (153)
...+ .........|+.|++|.|+|+++++++|+++|+.+...+.. +...+.+||+|||||+|||++.++|
T Consensus 104 ~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~----~~~~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 104 ESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDD----GKMKGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred cccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCcc----CCceeEEEEECCCCCEEEEEECCCc
Confidence 2111 00011112588999999999999999999999999765432 2223468899999999999998764
No 6
>PLN02367 lactoylglutathione lyase
Probab=99.91 E-value=2.1e-22 Score=136.49 Aligned_cols=128 Identities=21% Similarity=0.351 Sum_probs=92.2
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCC--CCCcceeeEE-------------------ecCeEEEEeeecCC
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPP--AFDFAGAWLF-------------------SYGVGVHLVQSNDE 79 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~-------------------~~~~~~~l~~~~~~ 79 (153)
.--.+.|+.|.|+|+++|++||+++|||++..+.. +..+..+++. ..+..++|+.....
T Consensus 72 ~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~ 151 (233)
T PLN02367 72 KGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGT 151 (233)
T ss_pred CCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCC
Confidence 45678999999999999999999999999887653 2233334432 11346788775543
Q ss_pred CCCCC---CCC-CCCCCCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 80 DKLSP---PDS-AHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 80 ~~~~~---~~~-~~~~~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
..... ... .....|.+||+|.|+|+++++++|+++|+++...+.. |...+.+||+|||||+|||++++.
T Consensus 152 e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~----g~~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 152 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPND----GKMKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCcc----CCceEEEEEECCCCCEEEEEeccc
Confidence 21110 001 1112588999999999999999999999999876543 222346899999999999999865
No 7
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.90 E-value=4.9e-22 Score=124.31 Aligned_cols=124 Identities=21% Similarity=0.348 Sum_probs=89.0
Q ss_pred ceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe
Q 047907 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC 101 (153)
Q Consensus 22 ~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v 101 (153)
+.+++|+.|.|+|++++++||+++|||......... ...++..++..+++........ +......++..|++|.+
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~hi~~~~ 75 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKALRFGSQKINLHPVGGEFE---PAAGSPGPGSDDLCLIT 75 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceEEEeCCEEEEEecCCCccC---cCccCCCCCCceEEEEe
Confidence 467999999999999999999999999998765321 2233333445566655433211 11222346789999999
Q ss_pred CC-HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 102 GN-MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 102 ~d-i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++ +++++++|+++|+++...+..........+++||+|||||+||++++
T Consensus 76 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 76 EPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 64 99999999999999887665432211223579999999999999874
No 8
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.90 E-value=6.4e-22 Score=127.12 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=80.7
Q ss_pred CCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCC--CCc-ceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCce
Q 047907 20 LPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPA--FDF-AGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNH 96 (153)
Q Consensus 20 ~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h 96 (153)
+.+.+++|++|.|+|++++.+||+++|||++..+... ... ...|+..+. ..+.+.... . ..++++|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~-~~h~~~~~~---------~-~~~~~~H 70 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN-KPHDIAFVG---------G-PDGKLHH 70 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC-CcceEEEec---------C-CCCCceE
Confidence 5678999999999999999999999999998655321 111 123332211 111111110 0 1267899
Q ss_pred EEEEeCCHHH---HHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 97 ISFQCGNMEA---IEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 97 l~f~v~di~~---~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
+||.|+|+++ +.++|+++|+++...+..+..++ .+++||+|||||+|||++
T Consensus 71 iaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~--~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 71 FSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITR--GQTIYFFDPSGNRNETFA 124 (143)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCC--ceEEEEECCCCCEEEEec
Confidence 9999999887 56899999999876555433222 237999999999999975
No 9
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.89 E-value=9.9e-23 Score=128.24 Aligned_cols=124 Identities=21% Similarity=0.293 Sum_probs=85.0
Q ss_pred eEeEEEEEeCChHHHHHHHhHhcCcEEeeeC--CCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe
Q 047907 24 SLNHVSRLCRNVEDSIDFYTKVLGFVLIERP--PAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC 101 (153)
Q Consensus 24 ~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v 101 (153)
+++|+.|.|+|++++++||+++|||++.... ........++..++..++|...................+..|++|.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 5789999999999999999999999987542 11222344444455677776532221110000011135778999999
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEE--eCCCCCeEEEee
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFF--DDPDGFMIEICN 149 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~--~DPdG~~iel~~ 149 (153)
+|+++++++|+++|++++.++.....+|.+ .+++ +||||++||+++
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~--~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKP--VAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCE--EEEecccccCcEEEEecC
Confidence 999999999999999987642222334444 4555 899999999975
No 10
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.89 E-value=6.8e-22 Score=123.68 Aligned_cols=121 Identities=26% Similarity=0.399 Sum_probs=85.7
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcc--eeeEE-ecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEE
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFA--GAWLF-SYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISF 99 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f 99 (153)
.+++|++|.|.|++++++||+++|||.+..+....+.. ...+. .++..++++......... ......+.+|++|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~---~~~~~~g~~h~~~ 78 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERP---SYPEACGLRHLAF 78 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCC---CCCcCCCceEEEE
Confidence 57899999999999999999999999987653211101 11222 244566766544332111 1123367899999
Q ss_pred EeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 100 QCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 100 ~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
.|+|+++++++|+++|+++...+.. ..+|. +++|++||+||+|||++
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~-~~~~~--~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVD-EFTGK--RFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCcccccccc-CCCce--EEEEEECCCCCEEEecC
Confidence 9999999999999999998764432 22243 37999999999999985
No 11
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.89 E-value=8.2e-22 Score=126.11 Aligned_cols=117 Identities=29% Similarity=0.485 Sum_probs=86.0
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEE
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~ 100 (153)
|+.++.|+.|.|+|++++++||+++|||++..+.. ...++..++..+.+..... .. ......+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~g~~l~l~~~~~---~~---~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR----KTAYFDLNGLWIALNEEKD---IP---RNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC----eeEEEecCCeEEEeeccCC---CC---CccCCCCeeEEEEE
Confidence 46789999999999999999999999999986532 2344444455555433211 11 11123567899999
Q ss_pred eC--CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 101 CG--NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 101 v~--di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++ |+++++++|+++|+++...+.... ++. +.+||+|||||+|||.+.
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~-~~~--~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDE-RDK--KSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccC-CCc--eEEEEECCCCCEEEEEeC
Confidence 97 999999999999999876544332 233 479999999999999875
No 12
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.89 E-value=1.4e-21 Score=123.82 Aligned_cols=117 Identities=15% Similarity=0.329 Sum_probs=82.8
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCc---ceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceE
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDF---AGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHI 97 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl 97 (153)
|+.+++|++|.|+|++++++||+++|||++..+.....+ ...++..++..+.+..... ....+++|+
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~----------~~~~~~~Hi 70 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDS----------LQERTYNHI 70 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCC----------CCCCCceEE
Confidence 467899999999999999999999999988765432111 1123333344555542111 011468999
Q ss_pred EEEeC--CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 98 SFQCG--NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 98 ~f~v~--di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
+|.|+ ++++++++|+++|+++..+... . ++. .+++||+|||||.|||.+.
T Consensus 71 af~v~~~~ld~~~~~l~~~gv~~~~~~~~-~-~~~-g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 71 AFKISDSDVDEYTERIKALGVEMKPPRPR-V-QGE-GRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred EEEcCHHHHHHHHHHHHHCCCEEecCCcc-c-cCC-ceEEEEECCCCCEEEEecC
Confidence 99997 7999999999999987643322 2 232 2489999999999999875
No 13
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.89 E-value=1.6e-21 Score=122.13 Aligned_cols=119 Identities=22% Similarity=0.306 Sum_probs=82.6
Q ss_pred eEeEEEEEeCChHHHHHHHhHhcCcEEeeeC--CCCCcceeeEEe-cCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEE
Q 047907 24 SLNHVSRLCRNVEDSIDFYTKVLGFVLIERP--PAFDFAGAWLFS-YGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 24 ~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~--~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~ 100 (153)
+++|++|.|+|++++++||+++|||++.... ....+...|+.. ++..++++......... ......+..|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP---NEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc---ccCCCCceEEEEEE
Confidence 4789999999999999999999999975432 112223344433 34557777543221110 11223578999999
Q ss_pred eC---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 101 CG---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 101 v~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
|+ ++++++++|+++|+++...+... .+| .+.++++|||||+|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~-~~g--~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTT-GDG--YYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceec-CCC--eEEEEEECCCCCEEEeC
Confidence 95 58999999999999988655432 223 33578999999999984
No 14
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.88 E-value=5.6e-21 Score=120.36 Aligned_cols=121 Identities=22% Similarity=0.370 Sum_probs=88.6
Q ss_pred eEeEEEEEeCChHHHHHHHhHhc---CcEEeeeCCCCCcceeeEE-ecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEE
Q 047907 24 SLNHVSRLCRNVEDSIDFYTKVL---GFVLIERPPAFDFAGAWLF-SYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISF 99 (153)
Q Consensus 24 ~i~hv~i~v~d~~~s~~FY~~~l---G~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f 99 (153)
+|+|+.|.|.|++++++||+++| ||++...... ...|.. .++..+.++........ .......+.+|++|
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED---GRSWRAGDGGTYLVLQQADGESAG---RHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc---CceEEecCCceEEEEEecccCCCc---ccccCCcCeeEEEE
Confidence 57999999999999999999999 9999876421 234443 25566777665443221 11122366789999
Q ss_pred EeC---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 100 QCG---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 100 ~v~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
.|+ |+++++++|+++|+++...+.....+....+.+|++||+||+|||+.+
T Consensus 75 ~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 75 RAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 996 589999999999999987665421123344589999999999999875
No 15
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.88 E-value=3.5e-21 Score=120.17 Aligned_cols=118 Identities=22% Similarity=0.295 Sum_probs=80.3
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeC
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCG 102 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~ 102 (153)
+++.|+.|.|+|+++|++||+++|||++..+.. ....+ ..+..+.+........ .........+..|++|.|+
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~~~~~-~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~~v~ 73 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----ENVTF-EGGFALQEGYSWLEGI--SKADIIEKSNNFELYFEEE 73 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----ceEEE-eccceeccchhhhccC--CcccccccCCceEEEEEeh
Confidence 478999999999999999999999999875432 11112 2222222211100000 0011112345679999999
Q ss_pred CHHHHHHHHHHcCC-eEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 103 NMEAIEKRLKELDV-KYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 103 di~~~~~~l~~~G~-~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|+++++++|+++|+ ++..++.. .+||.+ .++|+|||||+|||.++
T Consensus 74 dvd~~~~~l~~~g~~~~~~~~~~-~~~g~r--~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 74 DFDAFLDKLKRYDNIEYVHPIKE-HPWGQR--VVRFYDPDKHIIEVGES 119 (120)
T ss_pred hhHHHHHHHHhcCCcEEecCccc-CCCccE--EEEEECCCCCEEEEecc
Confidence 99999999999986 67665554 335654 79999999999999875
No 16
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.88 E-value=3.9e-21 Score=124.45 Aligned_cols=131 Identities=21% Similarity=0.305 Sum_probs=88.1
Q ss_pred CCCCCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCc--ceeeEEecC-eEEEEeeecCCCCCCCCCCCCCCCC
Q 047907 17 EPELPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDF--AGAWLFSYG-VGVHLVQSNDEDKLSPPDSAHLDSM 93 (153)
Q Consensus 17 ~~~~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (153)
.+....++++|+.|.|+|++++.+||+++|||++..+....+. ...++..++ .....+......... ....+.+
T Consensus 10 ~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~g 86 (150)
T TIGR00068 10 DPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTE---KYDLGNG 86 (150)
T ss_pred CcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCC---cccCCCc
Confidence 3456788999999999999999999999999998765422211 122222111 111111111111111 1112257
Q ss_pred CceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 94 DNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
..|++|.|+|+++++++|.++|++++.++.... +...+.+||+||+||+|||++..+
T Consensus 87 ~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 87 FGHIAIGVDDVYKACERVRALGGNVVREPGPVK--GGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred eeEEEEecCCHHHHHHHHHHcCCccccCCcccC--CCceEEEEEECCCCCEEEEEECCc
Confidence 889999999999999999999999876654332 223347899999999999998753
No 17
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.88 E-value=3.2e-21 Score=120.66 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=81.0
Q ss_pred ceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecC--eEEEEeeecCCCCCCCCCCCCCCCCCceEEE
Q 047907 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYG--VGVHLVQSNDEDKLSPPDSAHLDSMDNHISF 99 (153)
Q Consensus 22 ~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f 99 (153)
+++++|+.|.|+|+++|++||+++|||++...... ...++...+ ....+.... ...++..|++|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~hiaf 67 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ---GRVYLKAWDEFDHHSIVLRE-----------ADTAGLDFMGF 67 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC---ceEEEEccCCCcccEEEecc-----------CCCCCeeEEEE
Confidence 57899999999999999999999999998766421 223333211 111111111 01256789999
Q ss_pred EeC---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 100 QCG---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 100 ~v~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
.|+ ++++++++|+++|+++...+..... +. .+++||+|||||+|||++...
T Consensus 68 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~-~~-~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 68 KVLDDADLEKLEARLQAYGVAVERIPAGELP-GV-GRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred EeCCHHHHHHHHHHHHHCCCcEEEcccCCCC-CC-ceEEEEECCCCCEEEEEEecc
Confidence 996 8899999999999998764432222 21 137999999999999997643
No 18
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.87 E-value=3.9e-21 Score=121.78 Aligned_cols=114 Identities=26% Similarity=0.411 Sum_probs=82.8
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeC--
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCG-- 102 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~-- 102 (153)
|+||.|.|+|++++++||+++|||++..... ...++..++..+.+...+.. + .....++.+|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~~~~~~~~~~~l~l~~~~~~-----~-~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----KTAYFTIGGTWLALNEEPDI-----P-RNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----ccceEeeCceEEEEEccCCC-----C-cCCcCccceEEEEEecHH
Confidence 6899999999999999999999999876532 22344444555655443221 1 1122357899999996
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
|+++++++|+++|+++..++.... ++. +.+||+|||||+|||+++.
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~-~~~--~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDV-RDR--KSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCcccc-Ccc--eEEEEECCCCCEEEEecCc
Confidence 599999999999999865443222 233 4799999999999999864
No 19
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.87 E-value=4.1e-21 Score=117.97 Aligned_cols=113 Identities=38% Similarity=0.656 Sum_probs=84.4
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCe-EEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCC
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGV-GVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGN 103 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~d 103 (153)
|+|++|.|+|++++++||+++|||.+..+.... ....++..++. .+++......... ....++..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~~~~~~-----~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL-FPGAWLYAGDGPQLHLIEEDPPDAL-----PEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC-CCceEEEeCCCcEEEEEecCCCccc-----cCCCcccceEEEEeCC
Confidence 589999999999999999999999987654321 23455554443 6777665443211 1123567899999999
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEE
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEI 147 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 147 (153)
+++++++++++|+++..++.. .++. ++++++||+||+|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~--~~~~--~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP--GDGV--RQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC--CCCc--cEEEEECCCCCEEeC
Confidence 999999999999998876543 2243 379999999999996
No 20
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.87 E-value=8.1e-21 Score=118.38 Aligned_cols=115 Identities=26% Similarity=0.357 Sum_probs=82.7
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCC--CcceeeEEecC----eEEEEeeecCCCCCCCCCCCCCCCCCceEE
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAF--DFAGAWLFSYG----VGVHLVQSNDEDKLSPPDSAHLDSMDNHIS 98 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~--~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~ 98 (153)
+.|++|.|+|++++.+||+++|||++....... ++...++...+ ..+++........ ....+.+..|++
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~i~ 75 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE-----PYDNGNGFGHLA 75 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC-----CcCCCCCeEEEE
Confidence 579999999999999999999999987654222 23334444322 3455544322111 112224678999
Q ss_pred EEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 99 FQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 99 f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
|.++|+++++++|+++|+++..++... .+. +.+||+||+||+|||+
T Consensus 76 ~~v~did~~~~~l~~~G~~~~~~~~~~--~~~--~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 76 FAVDDVYAACERLEEMGVEVTKPPGDG--GMK--GIAFIKDPDGYWIELI 121 (121)
T ss_pred EEeCCHHHHHHHHHHCCCEEeeCCccC--CCc--eEEEEECCCCCEEEeC
Confidence 999999999999999999998776543 233 3689999999999985
No 21
>PRK06724 hypothetical protein; Provisional
Probab=99.87 E-value=8.9e-21 Score=119.53 Aligned_cols=116 Identities=21% Similarity=0.360 Sum_probs=81.1
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhc---CcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceE
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVL---GFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHI 97 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl 97 (153)
+..+|+||.|.|+|+++|++||+++| |++..... .+ ..+...+.+...... . ...++..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~-------~~-~~g~~~l~l~~~~~~----~----~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEV-------AY-STGESEIYFKEVDEE----I----VRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE-------ee-eCCCeeEEEecCCcc----c----cCCCCceeE
Confidence 56689999999999999999999966 66643210 11 112223333221110 0 112567899
Q ss_pred EEEe---CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 98 SFQC---GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 98 ~f~v---~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
||.| +++++++++|+++|+++..+|......+.+.++++|+|||||.|||++..+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~~ 125 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTPN 125 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCCC
Confidence 9998 889999999999999997766543322344568999999999999988654
No 22
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.87 E-value=7.8e-21 Score=118.64 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=81.0
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeC
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCG 102 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~ 102 (153)
++|.|++|.|+|+++|++||+++|||++..+.. ....++...+....+.....+ ..+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DGALYLRMDDRAWRIAVHPGE-----------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC---CCeEEEEccCCceEEEEEeCC-----------CCceeEEEEEEC
Confidence 368999999999999999999999999876532 134454443333333332211 146779999995
Q ss_pred ---CHHHHHHHHHHcCCeEEeecccc-CCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 103 ---NMEAIEKRLKELDVKYIKRTVKD-DQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 103 ---di~~~~~~l~~~G~~~~~~~~~~-~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
|+++++++|+++|+++...+... ...+. .+++||+|||||+|||+...
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGV-EGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCC-cEEEEEECCCCCEEEEEecc
Confidence 58999999999999997644321 11122 24799999999999999754
No 23
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.87 E-value=2.7e-21 Score=125.54 Aligned_cols=119 Identities=20% Similarity=0.197 Sum_probs=80.2
Q ss_pred eEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCC---CCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEE
Q 047907 24 SLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPA---FDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 24 ~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~ 100 (153)
+|+||+|.|+|++++++||+++|||++...... ......++...+.. .+..... .... ...+++++|+||.
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~---~~l~--~~~~~g~~Hiaf~ 74 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGE-EYVDHHT---LALA--QGPESGVHHAAFE 74 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCC-CcccchH---HHHh--cCCCCceeEEEEE
Confidence 579999999999999999999999998754321 11123333221110 0000000 0000 1113789999999
Q ss_pred eCCHHHHH---HHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 101 CGNMEAIE---KRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 101 v~di~~~~---~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|+|++++. ++|+++|+++...+..... |.. .++|++||+||+|||++.
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~-g~~-~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHIL-GSQ-IFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCC-CCC-EEEEEECCCCCEEEEEcC
Confidence 99999986 9999999999866554432 333 378999999999999864
No 24
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.87 E-value=1.2e-20 Score=118.53 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=81.2
Q ss_pred CCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEE
Q 047907 20 LPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISF 99 (153)
Q Consensus 20 ~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f 99 (153)
.++.+|.|+.|.|+|+++|.+||+++|||++..+.. ...|+..++....+...... ++..|++|
T Consensus 2 ~~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~~~~l~~~~~~~~i~l~~~~------------~~~~~iaf 65 (124)
T cd08361 2 IELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA----KATYFRSDARDHTLVYIEGD------------PAEQASGF 65 (124)
T ss_pred ceEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----CeEEEEcCCccEEEEEEeCC------------CceEEEEE
Confidence 467899999999999999999999999999876532 24454433222212211110 34578999
Q ss_pred EeCC---HHHHHHHHHHcCCeEEeeccccC-CCCCceeEEEEeCCCCCeEEEeecC
Q 047907 100 QCGN---MEAIEKRLKELDVKYIKRTVKDD-QSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 100 ~v~d---i~~~~~~l~~~G~~~~~~~~~~~-~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+|++ +++++++|+++|+++...+.... .++. .+++||+|||||+||+++..
T Consensus 66 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 66 ELRDDDALESAATELEQYGHEVRRGTAEECELRKV-KAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCc-ceEEEEECcCCCEEEEEEee
Confidence 9965 99999999999999866443211 1122 23689999999999999764
No 25
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.87 E-value=1.6e-20 Score=117.64 Aligned_cols=112 Identities=25% Similarity=0.421 Sum_probs=81.2
Q ss_pred ceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEE-ecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEE
Q 047907 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLF-SYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 22 ~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~ 100 (153)
.+++.|+.|.|+|+++|++||+++|||+...... ...++. ..+..+.+.... ...+..|++|.
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~l~~~~~~------------~~~~~~h~a~~ 65 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----PFAVVKLDNGVSLDFAQPD------------GEIPPQHYAFL 65 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----CEEEEEcCCCcEEEEecCC------------CCCCcceEEEE
Confidence 5789999999999999999999999999876432 112222 223334433210 01345789998
Q ss_pred eC--CHHHHHHHHHHcCCeEEeecccc------CCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 101 CG--NMEAIEKRLKELDVKYIKRTVKD------DQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 101 v~--di~~~~~~l~~~G~~~~~~~~~~------~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
++ |+++++++|.++|+++...+... ..+|. +.+||+|||||+|||++.+
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~--~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGG--RGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCe--eEEEEECCCCCEEEEEecc
Confidence 85 79999999999999987655432 12344 4899999999999999863
No 26
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.87 E-value=1.9e-20 Score=119.05 Aligned_cols=112 Identities=22% Similarity=0.302 Sum_probs=81.3
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecC----eEEEEeeecCCCCCCCCCCCCCCCCCceEE
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYG----VGVHLVQSNDEDKLSPPDSAHLDSMDNHIS 98 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~ 98 (153)
.+++|++|.|+|+++|++||+++|||++...... ...++...+ ..+.+..... ...+++|++
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~---~~~~~~~~~~~~~~~i~l~~~~~-----------~~~g~~hia 67 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG---RGAFLRAAGGGDHHNLFLIKTPA-----------PMAGFHHAA 67 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC---cEEEEECCCCCCCcEEEEecCCC-----------CCCcceEEE
Confidence 5799999999999999999999999998765421 244543321 1233322111 136889999
Q ss_pred EEeCCHHHHH---HHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 99 FQCGNMEAIE---KRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 99 f~v~di~~~~---~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|.|+|++++. ++|.++|+++...+..... ++ .+++||+||+||+|||...
T Consensus 68 f~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~-~~-~~~~y~~DP~G~~iEl~~~ 120 (134)
T cd08360 68 FEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRI-GS-NYFWYFRDPWGGEVEYGAD 120 (134)
T ss_pred EEeCCHHHHHHHHHHHHHcCCccccCCCCcCC-Cc-cEEEEEECCCCCEEEEEcc
Confidence 9999888777 5999999998755544332 33 3479999999999999864
No 27
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.87 E-value=2.1e-20 Score=115.50 Aligned_cols=110 Identities=18% Similarity=0.282 Sum_probs=80.3
Q ss_pred ceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe
Q 047907 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC 101 (153)
Q Consensus 22 ~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v 101 (153)
+.+++|+.|.|+|+++|++||++ |||++..+.. ...|+...+....++..... ..+++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD----DELYYRGYGTDPFVYVARKG----------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC----CeEEEecCCCccEEEEcccC----------CcCcccEEEEEE
Confidence 46899999999999999999999 9999876542 34555432222222221110 125778999999
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
+|.+++.+.+++.|++....+. .+++.. +++|+|||||.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~--~~~~~~--~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE--APGGGK--RVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC--CCCCce--EEEEECCCCCEEEEEec
Confidence 9999999999999998765432 223433 79999999999999864
No 28
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.86 E-value=2e-20 Score=121.91 Aligned_cols=115 Identities=23% Similarity=0.329 Sum_probs=83.0
Q ss_pred eEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEec---CeEEEEeeecCCCCCCCCCCCCCCCCCceEEEE
Q 047907 24 SLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSY---GVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 24 ~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~ 100 (153)
+|+||+|.|+|++++++||+++|||++..+... ...+...+ +..+.+....... ......++++|++|.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~~~~-----~~~~~~~~l~Hiaf~ 72 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGD---RVRLEEGGGGPGAVVDVLEEPDQP-----RGRPGAGTVHHVAFR 72 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCC---EEEEEecCCCCCCEEEEEeCCCCC-----CCcccCCceEEEEEE
Confidence 479999999999999999999999999876531 22333322 4556666642111 111123568899999
Q ss_pred eCC---HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 101 CGN---MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 101 v~d---i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
|+| +++++++|+++|+++.. +... + ..+++||+|||||+|||++..
T Consensus 73 v~d~~dvd~~~~~L~~~Gv~~~~-~~~~---~-~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 73 VPDDEELEAWKERLEALGLPVSG-IVDR---F-YFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CCCHHHHHHHHHHHHHCCCCccc-cccc---c-cEEEEEEECCCCcEEEEEECC
Confidence 987 89999999999997643 2221 2 235899999999999999864
No 29
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.86 E-value=3.3e-20 Score=114.62 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=81.5
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecC-eEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCC
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYG-VGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGN 103 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~d 103 (153)
+.|+.|.|+|++++++||+++|||++...... ......+..++ ....++...... ...+...|++|.++|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~f~v~d 71 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGDG-GGDYAVFSTGGGAVGGLMKAPEPA--------AGSPPGWLVYFAVDD 71 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccCC-CCceEEEEeCCccEEEEecCCCCC--------CCCCCeEEEEEEeCC
Confidence 47999999999999999999999998765421 11222332222 233444333221 122556799999999
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
+++++++|.++|+++..++.... +++ +.++++|||||.|+|++
T Consensus 72 i~~~~~~l~~~g~~~~~~~~~~~-~~~--~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 72 VDAAAARVEAAGGKVLVPPTDIP-GVG--RFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHHCCCEEEeCCcccC-CcE--EEEEEECCCCCEEEeEC
Confidence 99999999999999987765443 233 47999999999999985
No 30
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.86 E-value=2.8e-20 Score=116.21 Aligned_cols=113 Identities=21% Similarity=0.270 Sum_probs=79.9
Q ss_pred CCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecC-eEEEEeeecCCCCCCCCCCCCCCCCCceEE
Q 047907 20 LPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYG-VGVHLVQSNDEDKLSPPDSAHLDSMDNHIS 98 (153)
Q Consensus 20 ~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~ 98 (153)
|.+.+|+|+.|.|+|++++.+||+++|||++..+.. ...++...+ .....+.... ....+++|++
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~~~~l~~~~~~~~~~~~l~~----------~~~~~~~h~a 67 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----QSVYLRAWGDYEHHSLKLTE----------SPEAGLGHIA 67 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----CeEEEEeccCCCccEEEEee----------CCCCceEEEE
Confidence 678899999999999999999999999999887643 233433221 1111111100 1125789999
Q ss_pred EEeC---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 99 FQCG---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 99 f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|.++ ++++++++|+++|+++...+..+ . ++. .+||+|||||+||++..
T Consensus 68 f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~-~-~~~--~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 68 WRASSPEALERRVAALEASGLGIGWIEGDP-G-HGK--AYRFRSPDGHPMELYWE 118 (121)
T ss_pred EEcCCHHHHHHHHHHHHHcCCccccccCCC-C-Ccc--eEEEECCCCCEEEEEEe
Confidence 9995 68899999999999874322222 2 222 69999999999999875
No 31
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.86 E-value=1.8e-20 Score=121.79 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=80.5
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCC-----CcceeeEEecCe--EEEEeeecCCCCCCCCCCCCCCCC
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAF-----DFAGAWLFSYGV--GVHLVQSNDEDKLSPPDSAHLDSM 93 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~-----~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~ 93 (153)
..++|+|++|.|+|++++++||+++|||++....... .....++..++. .+.+.. ....++
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~------------~~~~~g 73 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE------------GPGPKR 73 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc------------CCCCce
Confidence 4578999999999999999999999999986642210 112233322111 111111 011267
Q ss_pred CceEEEEeCCHH---HHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 94 DNHISFQCGNME---AIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 94 ~~hl~f~v~di~---~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++|++|.|+|++ +++++|+++|+++...+.... ....+++|++||+||+|||++.
T Consensus 74 ~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~--~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 74 IHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHT--NDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred eEEEEEEcCCHHHHHHHHHHHHHcCCceeccCCccC--CCCcEEEEEECCCCcEEEeccC
Confidence 899999997655 689999999999976654433 2233489999999999999875
No 32
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.86 E-value=4.4e-20 Score=114.41 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=80.3
Q ss_pred EEEEEeCChHHHHHHHhHhcCcEEeeeCCC-CCcceeeEEec---CeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeC
Q 047907 27 HVSRLCRNVEDSIDFYTKVLGFVLIERPPA-FDFAGAWLFSY---GVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCG 102 (153)
Q Consensus 27 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~-~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~ 102 (153)
|++|.|.|++++++||+++|||++..+... .+.....+... +..+++........ . .....++..|++|.|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~-~~~~~~~~~~~~~~v~ 76 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPANPAA---M-SGLQPGGTPGLVLATD 76 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCCCccc---c-ccccCCCceEEEEEeh
Confidence 899999999999999999999999876531 12111222222 22344433222211 1 1122356789999999
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
|+++++++|+++|+++..++.. .. ++ +.++++||+||+|||++
T Consensus 77 di~~~~~~l~~~g~~~~~~~~~-~~-~~--~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 77 DIDATYEELKARGVEFSEEPRE-MP-YG--TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHHhCCCEEeecccc-CC-Cc--eEEEEECCCCCEEEEeC
Confidence 9999999999999999877632 22 22 47999999999999975
No 33
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.86 E-value=7.7e-20 Score=114.66 Aligned_cols=115 Identities=23% Similarity=0.300 Sum_probs=82.9
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecC--eEEEEeeecCCCCCCCCCCCCCCCCCceEEEE
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYG--VGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~ 100 (153)
++|+|+.|.|+|++++++||+++|||++..... ...++..++ ..+.+...+... .......+..|++|.
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~l~~~~~~~~l~l~~~~~~~-----~~~~~~~~~~hi~f~ 71 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD----STAVLGTGGKRPLLVLEEDPDAP-----PAPPGATGLYHFAIL 71 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----CEEEEecCCCeEEEEEEeCCCCC-----cccCCCCcEEEEEEE
Confidence 589999999999999999999999999987742 344444333 334444433211 111223678899999
Q ss_pred eC---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 101 CG---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 101 v~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
|+ ++++++++|.++|+++..+ ... +. .+++|++|||||+|||.+..
T Consensus 72 v~~~~~v~~~~~~l~~~g~~~~~~-~~~---~~-~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 72 LPSRADLAAALRRLIELGIPLVGA-SDH---LV-SEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CCCHHHHHHHHHHHHHcCCceecc-ccc---cc-eeEEEEECCCCCEEEEEEec
Confidence 96 5899999999999987543 221 21 24799999999999998753
No 34
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.86 E-value=3.5e-20 Score=116.00 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=81.2
Q ss_pred EeEEEEEeCChHHHHHHHhHh---cCcEEeeeCCCCCcceeeEEec--CeEEEEeeecCCCCCCCCCCCCCCCCCceEEE
Q 047907 25 LNHVSRLCRNVEDSIDFYTKV---LGFVLIERPPAFDFAGAWLFSY--GVGVHLVQSNDEDKLSPPDSAHLDSMDNHISF 99 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~---lG~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f 99 (153)
|.|+.|.|+|+++|++||+++ |||++..+... ....+... +..+.+....... . ...++..|++|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~------~-~~~~~~~hi~f 70 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGP---GAVGYGKGGGGPDFWVTKPFDGE------P-ATAGNGTHVAF 70 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecCC---ceeEeccCCCCceEEEeccccCC------C-CCCCCceEEEE
Confidence 579999999999999999998 69998765411 12223222 3455555432210 0 11134579999
Q ss_pred EeCC---HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 100 QCGN---MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 100 ~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
.|++ ++++++++.++|+.+...+.....+|...+++||+|||||+|||++
T Consensus 71 ~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~~ 123 (123)
T cd07262 71 AAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAVC 123 (123)
T ss_pred ECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEeC
Confidence 9976 7889999999999987666544433455568999999999999974
No 35
>PLN02300 lactoylglutathione lyase
Probab=99.86 E-value=6.5e-20 Score=130.25 Aligned_cols=126 Identities=19% Similarity=0.252 Sum_probs=89.8
Q ss_pred CCCCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCC--CCCcceeeEEecC----eEEEEeeecCCCCCCCCCCCCCC
Q 047907 18 PELPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPP--AFDFAGAWLFSYG----VGVHLVQSNDEDKLSPPDSAHLD 91 (153)
Q Consensus 18 ~~~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~ 91 (153)
+.|.+.++.|+.|.|+|++++++||+++|||++..+.. ...+...++..+. ..+++...... . ....+
T Consensus 18 ~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~---~---~~~~~ 91 (286)
T PLN02300 18 PKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV---D---KYDIG 91 (286)
T ss_pred CccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC---C---ccccC
Confidence 45789999999999999999999999999999876532 1222334443221 12333321110 0 11223
Q ss_pred CCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 92 SMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
.+..|++|.|+|+++++++|+++|+++...+.... ++ ..+.+||+|||||+|||++..
T Consensus 92 ~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~-~g-~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 92 TGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVK-GG-KSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred CCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccC-CC-ceEEEEEECCCCCEEEEEeCC
Confidence 67889999999999999999999999877654433 23 234689999999999999864
No 36
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.86 E-value=4.8e-20 Score=114.80 Aligned_cols=112 Identities=19% Similarity=0.297 Sum_probs=81.2
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe-
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC- 101 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v- 101 (153)
.+|+|+.|.|+|++++++||+++|||++..... ...++...+....++..... ..++..|++|.+
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVYLRATGSEHHILRLRRS----------DRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEEEECCCCccEEEEeccC----------CCCCCceEEEEeC
Confidence 589999999999999999999999999876543 23444433322222221110 114678999999
Q ss_pred --CCHHHHHHHHHHcCCeEEeecccc-CCCCCceeEEEEeCCCCCeEEEeec
Q 047907 102 --GNMEAIEKRLKELDVKYIKRTVKD-DQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 102 --~di~~~~~~l~~~G~~~~~~~~~~-~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
+++++++++|+++|+++..++... .+++.. .++|+||+||+|||++.
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGGGY--GFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCCce--EEEEECCCCCEEEEEec
Confidence 578999999999999987665322 223433 79999999999999875
No 37
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.85 E-value=7.4e-20 Score=113.85 Aligned_cols=114 Identities=18% Similarity=0.307 Sum_probs=78.5
Q ss_pred EEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecC--eEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCH
Q 047907 27 HVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYG--VGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNM 104 (153)
Q Consensus 27 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di 104 (153)
+..|.|+|+++|++||+++|||++..... ....+...+ ..+.+....... .. .......+...|++|.|+|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~~-~~-~~~~~~~~~~~~~~~~v~di 77 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----WYVSLRSPDGGVELAFMLPGHET-VP-AAQYQFQGQGLILNFEVDDV 77 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----cEEEEecCCCceEEEEccCCCCC-Cc-chhcccCCceEEEEEEECCH
Confidence 67899999999999999999999887632 122222222 334443322211 11 01111223345899999999
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++++++|.++|+++..++... +||.+ .++++||+||+|||++
T Consensus 78 d~~~~~l~~~G~~~~~~~~~~-~~g~~--~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 78 DAEYERLKAEGLPIVLPLRDE-PWGQR--HFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHHhcCCCeeeccccC-CCcce--EEEEECCCCCEEEEEC
Confidence 999999999999987665543 34544 7999999999999986
No 38
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.85 E-value=1.7e-20 Score=117.84 Aligned_cols=123 Identities=24% Similarity=0.342 Sum_probs=86.6
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCC---CcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAF---DFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC 101 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v 101 (153)
|+|+.|.|+|++++++||+++|||......... +....++..++..++++................+++..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 579999999999999999999999997755421 22345555566778887654322211100112347889999999
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCC--CCeEEEee
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPD--GFMIEICN 149 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPd--G~~iel~~ 149 (153)
+|+++++++++++|+++..++..... ++. .++++.+|+ |++|||++
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~-~g~-~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGA-GGK-RVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccC-CCC-EEEEEecCCCceEEEEecC
Confidence 99999999999999999887654333 332 234444444 99999975
No 39
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.85 E-value=7.7e-20 Score=120.23 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=83.4
Q ss_pred CCCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCC--CCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCce
Q 047907 19 ELPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPA--FDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNH 96 (153)
Q Consensus 19 ~~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h 96 (153)
.|.+.+|+|++|.|+|++++++||+++|||++...... ......|+...+....+...... ....++++|
T Consensus 1 ~~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~--------~~~~~~~~h 72 (166)
T cd09014 1 GVGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDP--------AGARGRLHH 72 (166)
T ss_pred CCCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCC--------CCCCCCceE
Confidence 37889999999999999999999999999998755321 11123444332222222221110 011256799
Q ss_pred EEEEeCC---HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 97 ISFQCGN---MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 97 l~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++|.|+| +++++++|+++|+++...+.... ++ ..+++|++||+||+|||++.
T Consensus 73 iaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~-~~-~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 73 LAYALDTREDVLRAADIFLENGIFIEAGPGKHG-IQ-QTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHcCCccccCCcccC-CC-CceEEEEECCCCCEEEEEEc
Confidence 9999975 45788999999999865554332 12 23379999999999999886
No 40
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=5.1e-20 Score=115.41 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=81.1
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCC----CCCCCCCCCCCCCceEEEE
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDK----LSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~hl~f~ 100 (153)
+.|+.|.|+|++++.+||+++|||++........+ ..+..++..+.+........ ...+......++..|++|.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESGDY--GELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAFV 78 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCCcE--EEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEEEE
Confidence 46999999999999999999999998754321111 11222333333333221100 0000111122445699999
Q ss_pred eCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 101 CGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 101 v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|+|+++++++++++|+++..++... +||.+ .++++|||||+|||+++
T Consensus 79 v~di~~~~~~l~~~G~~~~~~~~~~-~~g~~--~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 79 TDDVAAAFARAVEAGAVLVSEPKEK-PWGQT--VAYVRDINGFLIELCSP 125 (125)
T ss_pred cCCHHHHHHHHHHcCCEeccCCccC-CCCcE--EEEEECCCCCEEEEecC
Confidence 9999999999999999998765443 35654 68999999999999875
No 41
>PRK10291 glyoxalase I; Provisional
Probab=99.85 E-value=3.6e-20 Score=117.03 Aligned_cols=116 Identities=21% Similarity=0.318 Sum_probs=78.9
Q ss_pred EEEeCChHHHHHHHhHhcCcEEeeeCCCCC--cceeeEEecC----eEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeC
Q 047907 29 SRLCRNVEDSIDFYTKVLGFVLIERPPAFD--FAGAWLFSYG----VGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCG 102 (153)
Q Consensus 29 ~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~ 102 (153)
.|.|+|+++|++||+++|||++........ +...++..++ ..+++.... ... ....+.+.+|++|.|+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~---~~~~g~~~~hlaf~V~ 74 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW---GVD---KYELGTAYGHIALSVD 74 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecC---CCC---CCcCCCCeeEEEEEeC
Confidence 378999999999999999999877543222 2333332221 123333211 111 1122357889999999
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
|+++++++|+++|+++..++... .++. .+.++|+|||||+|||++.++
T Consensus 75 d~~~~~~~l~~~G~~~~~~~~~~-~~~~-~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 75 NAAEACEKIRQNGGNVTREAGPV-KGGT-TVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CHHHHHHHHHHcCCccccCCccc-CCCc-eEEEEEECCCCCEEEEEEccc
Confidence 99999999999999987654333 2343 346889999999999999653
No 42
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.85 E-value=7.6e-20 Score=113.32 Aligned_cols=110 Identities=20% Similarity=0.366 Sum_probs=82.7
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEec-CeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSY-GVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC 101 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v 101 (153)
++++|+.|.|+|++++++||+++|||++..... ...++..+ +....+...... ..+..|++|.|
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----------~~~~~h~~~~v 65 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GSVYLRCSEDDHHSLVLTEGD-----------EPGVDALGFEV 65 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----CeEEEecCCCCcEEEEEEeCC-----------CCCceeEEEEc
Confidence 579999999999999999999999999987653 34555544 233333322111 15678999999
Q ss_pred C---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 102 G---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 102 ~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
+ +++++.++|+++|+++...+.... ++. +.++|.||+||++|++..
T Consensus 66 ~~~~~v~~~~~~l~~~g~~~~~~~~~~~-~~~--~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 66 ASEEDLEALAAHLEAAGVAPEEASDPEP-GVG--RGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCccCC-CCc--eEEEEECCCCCEEEEEEc
Confidence 6 689999999999999977654222 233 379999999999999874
No 43
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.85 E-value=9.9e-20 Score=117.08 Aligned_cols=110 Identities=21% Similarity=0.384 Sum_probs=79.4
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCe--EEEEeeecCCCCCCCCCCCCCCCCCceEEEE
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGV--GVHLVQSNDEDKLSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~ 100 (153)
.+++|+.|.|+|++++++||+++|||++...... ...++..+.. .+.+.. ...+++.|++|.
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~l~~~~~~~~~~l~~-------------~~~~~~~hiaf~ 66 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLGD---QMAFLRCNSDHHSIAIAR-------------GPHPSLNHVAFE 66 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeCC---eEEEEECCCCcceEEEcc-------------CCCCceEEEEEE
Confidence 4899999999999999999999999998754321 2334433321 222211 012578899999
Q ss_pred eCCHHHHH---HHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 101 CGNMEAIE---KRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 101 v~di~~~~---~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|+|++++. ++|+++|+++...+..... +. .+++||+||+||+|||++.
T Consensus 67 v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~-~~-~~~~yf~DPdG~~iE~~~~ 117 (144)
T cd07239 67 MPSIDEVMRGIGRMIDKGIDILWGPGRHGP-GD-NTFAYFLDPGGFVIEYTSE 117 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCceeeCCcccCC-CC-CEEEEEECCCCcEEEeccC
Confidence 98887775 8999999998766544332 22 2368999999999999986
No 44
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.85 E-value=3.6e-20 Score=115.61 Aligned_cols=113 Identities=25% Similarity=0.350 Sum_probs=80.8
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEec--CeEEEEeeecCCCCCCCCCCCCCCCCCceEE
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSY--GVGVHLVQSNDEDKLSPPDSAHLDSMDNHIS 98 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~ 98 (153)
+++++.|+.|.|+|++++++||+++|||++..... ...++... .....+..... ..++..|++
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~hi~ 65 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DRIYLRGLEEFIHHSLVLTKA-----------PVAGLGHIA 65 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----CeEEEEecCCCceEEEEEeeC-----------CCCceeEEE
Confidence 36789999999999999999999999999876542 23333321 11112221110 125688999
Q ss_pred EEe---CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 99 FQC---GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 99 f~v---~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|.| +++++++++|+++|+++...+..... +.. +++|+.|||||+|||+..
T Consensus 66 ~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~-~~~-~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 66 FRVRSEEDLDKAEAFFQELGLPTEWVEAGEEP-GQG-RALRVEDPLGFPIEFYAE 118 (121)
T ss_pred EECCCHHHHHHHHHHHHHcCCCcccccCCcCC-CCc-cEEEEECCCCCEEEEEec
Confidence 999 58899999999999998665433332 322 379999999999999875
No 45
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.85 E-value=1.1e-19 Score=113.90 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=76.7
Q ss_pred EEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCC-CCCCCCCCCCCCceEEE--EeCC
Q 047907 27 HVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKL-SPPDSAHLDSMDNHISF--QCGN 103 (153)
Q Consensus 27 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~hl~f--~v~d 103 (153)
||.|.|+|+++|++||+++|||++..... ....+...+..+.+......... ..........+..|++| .++|
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~d 77 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEE 77 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHH
Confidence 99999999999999999999999865432 11112222334433332221110 00001111234567765 5599
Q ss_pred HHHHHHHHHHcCCeEEeeccccCC-CCCceeEEEEeCCCCCeEEEeec
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQ-SGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~-~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
+++++++|+++|+++..++..... .....+.+||+|||||+|||.++
T Consensus 78 v~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 78 FDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 999999999999999876653321 01123579999999999999874
No 46
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.85 E-value=5.2e-20 Score=113.48 Aligned_cols=109 Identities=25% Similarity=0.460 Sum_probs=78.3
Q ss_pred EEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe--CCH
Q 047907 27 HVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC--GNM 104 (153)
Q Consensus 27 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v--~di 104 (153)
|+.|.|+|++++++||+++|||++..+.. ...++..++..+.+....... ....+..|++|.| +++
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS----KEAYFELAGLWICLMEEDSLQ--------GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC----ceeEEEecCeEEEeccCCCcC--------CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999876653 234444444444443322111 1125678999999 589
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++++++++++|+++........ ++. +.+|++|||||+|||++.
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~-~~~--~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQ-GEG--RSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccC-CCc--eEEEEECCCCCEEEEEeC
Confidence 9999999999999864332221 122 479999999999999864
No 47
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.85 E-value=3.7e-19 Score=111.20 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=82.4
Q ss_pred EEEEeCChHHHHHHHhHhcCcEEeeeCCC--CCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCHH
Q 047907 28 VSRLCRNVEDSIDFYTKVLGFVLIERPPA--FDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNME 105 (153)
Q Consensus 28 v~i~v~d~~~s~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di~ 105 (153)
..|.|+|++++++||+++|||++...... .......+..++..+.+.......... . .....++..|++|.|+|++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~v~d~d 80 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRAS-S-ARAGGAGTQGVYVVVDDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCccccc-c-cccCCCceEEEEEEECCHH
Confidence 46899999999999999999999876421 111122333344455554433221111 0 1122255679999999999
Q ss_pred HHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 106 AIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 106 ~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
+++++++++|+++..++.... ||.+ .++++|||||+|+|.++
T Consensus 81 ~~~~~l~~~G~~v~~~~~~~~-~g~~--~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 81 AHYERARAAGAEILREPTDTP-YGSR--EFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHHHCCCEEeeCccccC-CCcE--EEEEECCCCCEEEEecC
Confidence 999999999999987665443 5654 69999999999999764
No 48
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.84 E-value=8.4e-20 Score=114.11 Aligned_cols=108 Identities=27% Similarity=0.451 Sum_probs=79.6
Q ss_pred eEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe--
Q 047907 24 SLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC-- 101 (153)
Q Consensus 24 ~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v-- 101 (153)
+|+|+.|.|+|++++.+||+++|||++..... ...++..++..+.+...... ...++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~----~~~~~~~~~~~~~l~~~~~~---------~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD----KGAYLEAGDLWLCLSVDANV---------GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC----CceEEecCCEEEEEecCCCC---------CCCCCeeeEEEEeCH
Confidence 47899999999999999999999999877653 23444444444443221111 1125678999999
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
+|+++++++|+++|+++..++.. .+ +.+||+|||||+|||++-
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~---~~---~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS---EG---DSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC---Cc---cEEEEECCCCCEEEEEeC
Confidence 68999999999999988654322 12 379999999999999874
No 49
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.84 E-value=2.6e-19 Score=111.67 Aligned_cols=119 Identities=20% Similarity=0.289 Sum_probs=81.3
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecC-eEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe--
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYG-VGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC-- 101 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v-- 101 (153)
|.|+.|.|+|++++++||+++|||++..... . ...++..++ ..+.++..................+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~--~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 77 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKED-R--RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAIPA 77 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCC-C--ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEcCH
Confidence 4689999999999999999999999987522 1 223333333 344444433221101111111235778999999
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
+|++++++++.++|+++...+. ..++. +.++|+||+||+|||+++
T Consensus 78 ~dl~~~~~~l~~~g~~~~~~~~--~~~~~--~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 78 EELAEWEAHLEAKGVAIESEVQ--WPRGG--RSLYFRDPDGNLLELATP 122 (122)
T ss_pred HHHHHHHHHHHhcCCceecccc--CCCCe--eEEEEECCCCCEEEEecC
Confidence 5899999999999998865443 22233 479999999999999874
No 50
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.84 E-value=1.2e-19 Score=118.70 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=75.9
Q ss_pred ceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCC--CCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEE
Q 047907 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPA--FDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISF 99 (153)
Q Consensus 22 ~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f 99 (153)
.++|+|++|.|+|+++|++||+++|||++...... ......++...+....+... ...+++++|++|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~-----------~~~~~~~~Hiaf 69 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALT-----------GGNGPRLHHVAF 69 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEe-----------cCCCCceeEEEE
Confidence 36899999999999999999999999998654321 11112233221111111100 112257899999
Q ss_pred EeCC---HHHHHHHHHHcCCeE--EeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 100 QCGN---MEAIEKRLKELDVKY--IKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 100 ~v~d---i~~~~~~l~~~G~~~--~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
.|+| +++++++|+++|+.. ...+..... ...+++||+|||||+|||++.
T Consensus 70 ~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~--~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 70 WVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGI--SNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred EcCCHHHHHHHHHHHHHcCCCcccccCCCccCC--CCceEEEEECCCCCeEEEeec
Confidence 9975 777889999999863 222222211 233479999999999999864
No 51
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.84 E-value=3.8e-20 Score=115.99 Aligned_cols=121 Identities=29% Similarity=0.428 Sum_probs=84.6
Q ss_pred eEeEEEEEeCChHHHHHHHhHhcCcEEeeeCC----CCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEE
Q 047907 24 SLNHVSRLCRNVEDSIDFYTKVLGFVLIERPP----AFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISF 99 (153)
Q Consensus 24 ~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f 99 (153)
+|+|++|.|+|++++.+||+++|||++..... .......++..+...+.+............... ...+..|+++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~ 79 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSF-PEHGGHHIAF 79 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHH-HSHTSEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeecccccccccccc-ccccceeEEE
Confidence 68999999999999999999999999987653 111233444445566777666554332221100 0014566777
Q ss_pred Ee---CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEE
Q 047907 100 QC---GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEI 147 (153)
Q Consensus 100 ~v---~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 147 (153)
.+ +|+++++++|++.|+++..++..... +. ..++|++||+||.|||
T Consensus 80 ~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~-~~-~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 80 LAFDVDDLDAAYERLKAQGVEIVEEPDRYYF-GS-GYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EESSHHHHHHHHHHHHHTTGEEEEEEEEHST-TC-EEEEEEEETTSEEEEE
T ss_pred EeccHHHHHHHHHHHhhcCccEEecCCCCCC-CC-EEEEEEECCCCCEEEC
Confidence 66 67888999999999999887765542 33 3367899999999997
No 52
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.84 E-value=3.3e-19 Score=111.13 Aligned_cols=113 Identities=20% Similarity=0.250 Sum_probs=79.0
Q ss_pred eEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCC--
Q 047907 26 NHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGN-- 103 (153)
Q Consensus 26 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~d-- 103 (153)
.|+.|.|+|++++.+||+++|||+...... + ...|.. .+..+.+........ ..++..|++|.+++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~-~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D-YAKFLL-EDPRLNFVLNERPGA--------PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C-eeEEEe-cCCceEEEEecCCCC--------CCCCeeEEEEEeCCHH
Confidence 599999999999999999999998866542 1 122322 222333333221110 01578899999977
Q ss_pred -HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 104 -MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 104 -i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+++++++|.++|+++...+..... +...+++|++||+||+|||++..
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCC-YAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccc-cCCcceEEEECCCCCEEEEEEee
Confidence 788999999999998765433221 22335799999999999999753
No 53
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.84 E-value=1.2e-19 Score=113.57 Aligned_cols=116 Identities=25% Similarity=0.431 Sum_probs=81.3
Q ss_pred eEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCC---cceeeEEe----cCeEEEEeeecCCCCCCCCCCCCCCCCCce
Q 047907 24 SLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFD---FAGAWLFS----YGVGVHLVQSNDEDKLSPPDSAHLDSMDNH 96 (153)
Q Consensus 24 ~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~---~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h 96 (153)
+|+|++|.|.|++++++||+++|||++.......+ ....++.. .+..++++........ ......++.|
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~----~~~~~~~~~h 76 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPK----GRRGPGQIHH 76 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCC----CCCCCCcEEE
Confidence 47899999999999999999999999876643211 11222322 2345666655432210 1122356789
Q ss_pred EEEEeC---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 97 ISFQCG---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 97 l~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
++|.|+ ++++++++++++|+++...+.. ++ .+.+||+||+||+|||+
T Consensus 77 i~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~--~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 77 IAFSVPSEASLDAWRERLRAAGVPVSGVVDH---FG--ERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCcccceEee---cc--eEEEEEECCCCCEEEeC
Confidence 999997 5799999999999998654322 23 34799999999999985
No 54
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.83 E-value=2.7e-19 Score=114.58 Aligned_cols=110 Identities=22% Similarity=0.194 Sum_probs=78.3
Q ss_pred eEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCe-EEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCH
Q 047907 26 NHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGV-GVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNM 104 (153)
Q Consensus 26 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di 104 (153)
.||.|.|+|++++.+||+++|||++..+... ...++...+. ..+.+.. .....++++|++|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~---~~~~l~~~~~~~~h~~~~----------~~~~~~gl~Hiaf~v~~~ 67 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED---RIVFMRCHPNPFHHTFAV----------GPASSSHFHHVNFMVTDI 67 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC---EEEEEEcCCCCCcceeee----------ccCCCCceEEEEEECCCH
Confidence 4999999999999999999999998766421 2344432221 1121111 011237899999999654
Q ss_pred ---HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 105 ---EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 105 ---~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++++++|+++|+++...+......+ .+++||+||+|++|||+..
T Consensus 68 ~~v~~~~~~l~~~G~~~~~~p~~~~~~~--~~~~y~~DPdG~~iE~~~~ 114 (141)
T cd07258 68 DDIGKALYRIKAHDVKVVFGPGRHPPSD--SIFFYFLDPDGITVEYSFG 114 (141)
T ss_pred HHHHHHHHHHHHCCCcEEeCCceECCCC--CEEEEEECCCCCEEEEEeC
Confidence 5679999999999877766544322 2479999999999999874
No 55
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.83 E-value=9.2e-19 Score=109.13 Aligned_cols=115 Identities=19% Similarity=0.133 Sum_probs=82.2
Q ss_pred EEEEeCChHHHHHHHhHhcCcEEeeeCC-C-CCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCHH
Q 047907 28 VSRLCRNVEDSIDFYTKVLGFVLIERPP-A-FDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNME 105 (153)
Q Consensus 28 v~i~v~d~~~s~~FY~~~lG~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di~ 105 (153)
+.|.|+|++++.+||+++|||++..... . .......+..++..+.+........ ......++..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG----SPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC----CCCCCCCceEEEEEEeCCHH
Confidence 4589999999999999999999987643 1 1112233334555666654322111 11122356679999999999
Q ss_pred HHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 106 AIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 106 ~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++++++.++|+++..++... .+|.+ .++++||+||+|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~-~~g~~--~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQ-FWGDR--YGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCcccc-cccce--EEEEECCCCCEEEEec
Confidence 99999999999998776543 34554 7999999999999987
No 56
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.83 E-value=7.4e-19 Score=111.56 Aligned_cols=115 Identities=25% Similarity=0.398 Sum_probs=80.8
Q ss_pred eEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEec---CeEEEEeeecCCCCCCCCCCCCCCCCCceEEEE
Q 047907 24 SLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSY---GVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 24 ~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~ 100 (153)
+|+|+.|.|+|++++++||+++|||++...... ....++..+ ...+.++....... .....+..|++|.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~h~~f~ 72 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GGLVFLSRDPDEHHQIALITGRPAAP------PPGPAGLNHIAFE 72 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--CcEEEEEecCCCceEEEEEecCCCCC------CCCCCCceEEEEE
Confidence 589999999999999999999999998766431 123343322 23455554332211 1122577899999
Q ss_pred eCCHH---HHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 101 CGNME---AIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 101 v~di~---~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
|++++ +++++|.++|+++...... +. .+.+|++||+||+|||++..
T Consensus 73 v~~~~~v~~~~~~l~~~G~~~~~~~~~----~~-~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 73 VDSLDDLRDLYERLRAAGITPVWPVDH----GN-AWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eCCHHHHHHHHHHHHHCCCCccccCCC----Cc-eeEEEEECCCCCEEEEEEcC
Confidence 97765 5889999999988654321 22 24799999999999999753
No 57
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.83 E-value=3.4e-19 Score=111.35 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=78.3
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEec-CeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe--
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSY-GVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC-- 101 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v-- 101 (153)
++|++|.|+|+++|++||+. |||++....... ....+..+ +..+.+......... .+......++..|++|.+
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 76 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE--PHVEAVLPGGVRLAWDTVESIRSF-TPGWTPTGGHRIALAFLCET 76 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC--CcEEEEeCCCEEEEEEcccceeee-cCCCCCCCCCcEEEEEEcCC
Confidence 57999999999999999976 999986543211 12222222 444544332211100 010111224557888887
Q ss_pred -CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 102 -GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 102 -~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
+|+++++++|+++|+++..++... .||.+ .++|+|||||+|||++
T Consensus 77 ~~dvd~~~~~l~~~G~~~~~~~~~~-~~g~~--~~~~~DPdG~~iel~~ 122 (122)
T cd07235 77 PAEVDALYAELVGAGYPGHKEPWDA-PWGQR--YAIVKDPDGNLVDLFA 122 (122)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCccC-CCCCE--EEEEECCCCCEEEEeC
Confidence 489999999999999987666543 35654 6999999999999974
No 58
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.82 E-value=9e-19 Score=110.90 Aligned_cols=114 Identities=24% Similarity=0.287 Sum_probs=79.3
Q ss_pred eEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCC-cceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCH
Q 047907 26 NHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFD-FAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNM 104 (153)
Q Consensus 26 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di 104 (153)
+|++|.|+|++++++||+++|||.+........ ....++..++....+...... ..++..|++|.|+|+
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~hl~~~v~d~ 70 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPGP----------ERPGLHHVAFEVESL 70 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcCC----------CCCCeeEEEEEcCCH
Confidence 599999999999999999999999876543111 133444333222111111110 036789999999877
Q ss_pred H---HHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 105 E---AIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 105 ~---~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+ +++++|.++|+++...+..... +. .++++|+||+||+|||++..
T Consensus 71 ~~~~~~~~~l~~~G~~i~~~~~~~~~-~~-~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 71 DDILRAADRLAANGIQIEFGPGRHGP-GN-NLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHHcCCeeEECCCccCC-CC-cEEEEEECCCCCEEEEEcCC
Confidence 4 6889999999999876654332 22 24789999999999999763
No 59
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=4.1e-19 Score=111.37 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=78.2
Q ss_pred eEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEec-CeEEEEeeecCCCCC-CCCCCCCCCCCCceEEEEeC-
Q 047907 26 NHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSY-GVGVHLVQSNDEDKL-SPPDSAHLDSMDNHISFQCG- 102 (153)
Q Consensus 26 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~~~~~~~hl~f~v~- 102 (153)
.++.|.|+|+++|++||+. |||+........ ...++..+ +..+.+......... ..........+..|++|.|+
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v~~ 78 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE--KAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSADS 78 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCC--CeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeCCC
Confidence 5789999999999999987 999987543322 22333333 345555543221100 00001112245579999996
Q ss_pred --CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 103 --NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 103 --di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++++++++++++|+++..++.... + .+.+||+|||||+|||++
T Consensus 79 ~~~vd~~~~~l~~~G~~i~~~p~~~~--~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 79 REEVDELVEKALAAGGKEFREPQDHG--F--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHHHHCCCcccCCcccCC--c--eEEEEEECCCCCEEEEEE
Confidence 688999999999999987654432 2 247899999999999985
No 60
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.82 E-value=1.7e-18 Score=106.35 Aligned_cols=109 Identities=19% Similarity=0.281 Sum_probs=78.8
Q ss_pred EEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCHHHHH
Q 047907 29 SRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNMEAIE 108 (153)
Q Consensus 29 ~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di~~~~ 108 (153)
.|.|+|++++++||+++|||++....... ...++..++..+++........ + ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPEP--GYAFLSRGGAQLMLSEHDGDEP---V----PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCCC--cEEEEEeCCEEEEEeccCCCCC---C----CCCCcEEEEEEeCCHHHHH
Confidence 68999999999999999999998765311 2334444556666655432111 0 1245668999999999999
Q ss_pred HHHHHcCCe-EEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 109 KRLKELDVK-YIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 109 ~~l~~~G~~-~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
+++.++|++ +..++.. ..+|. +.++++||+||+|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~-~~~g~--~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPED-QPWGM--REFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccC-CCccc--EEEEEECCCCCEEEecC
Confidence 999999998 4444333 23343 37999999999999985
No 61
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.82 E-value=5.7e-19 Score=107.93 Aligned_cols=104 Identities=27% Similarity=0.403 Sum_probs=74.2
Q ss_pred EEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEec----CeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCHH
Q 047907 30 RLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSY----GVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNME 105 (153)
Q Consensus 30 i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di~ 105 (153)
|.|+|++++++||+++|||++....+ ....+..+ .....+...... .....+..|++|.|+|++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~dv~ 68 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFRFHDGVIEFLQFPDP--------PGPPGGGFHLCFEVEDVD 68 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEEEEEEEEEEEEEESS--------SSSSSSEEEEEEEESHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccchhhhhHHHccCCcc--------ccCCCceeEEEEEEcCHH
Confidence 68999999999999999999998543 12222221 112333333211 111267789999999999
Q ss_pred HHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 106 AIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 106 ~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
+++++++++|+++..++.... || .+++++.|||||+|||+
T Consensus 69 ~~~~~l~~~G~~~~~~~~~~~-~g--~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 69 ALYERLKELGAEIVTEPRDDP-WG--QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHTTSEEEEEEEEET-TS--EEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHCCCeEeeCCEEcC-CC--eEEEEEECCCCCEEEeC
Confidence 999999999999988776643 34 34899999999999986
No 62
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.82 E-value=1.3e-18 Score=107.35 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=73.0
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecC-eEEEEeeecCCCCCCCCCCCCCCCCCceE--EE
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYG-VGVHLVQSNDEDKLSPPDSAHLDSMDNHI--SF 99 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~hl--~f 99 (153)
.+|+|++|.|+|++++++||+ .|||.+..+.+ ..++...+ ....+...... ..++.|+ .|
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 63 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD-----GLELRTAGNDHRWARLLEGA-----------RKRLAYLSFGI 63 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-----ceEEEecCCCceEEEeecCC-----------CCceeeEEEEe
Confidence 368999999999999999998 69999876532 22232222 11111111110 1234444 44
Q ss_pred EeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 100 QCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 100 ~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
.++|+++++++|+++|+++...+ ..++.. .+||+||+||+|||....+
T Consensus 64 ~~~d~~~~~~~l~~~Gi~~~~~~---~~~~~~--~~~~~DP~Gn~iel~~~~~ 111 (112)
T cd08344 64 FEDDFAAFARHLEAAGVALAAAP---PGADPD--GVWFRDPDGNLLQVKVAEK 111 (112)
T ss_pred EhhhHHHHHHHHHHcCCceecCC---CcCCCC--EEEEECCCCCEEEEecCCC
Confidence 55899999999999999987543 222333 6999999999999987643
No 63
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.81 E-value=1.3e-18 Score=107.45 Aligned_cols=109 Identities=20% Similarity=0.313 Sum_probs=78.7
Q ss_pred EEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEE-ecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCC---
Q 047907 28 VSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLF-SYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGN--- 103 (153)
Q Consensus 28 v~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~d--- 103 (153)
+.|.|+|+++|++||+++|||++..... ....+. .++..+.++....... .....++..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TFALFVLGSGVKLGLWSRHTVEP-----ASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ceEEEEeCCCcEEEEeeccccCC-----CCCCCCCceEEEEEcCCHHH
Confidence 5789999999999999999999876532 122232 2345666665433211 11123567899999965
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++++++++.++|+++..++... .||. .++|+|||||+|||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~-~~g~---~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEM-DFGY---TFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHHCCCeEecCcccc-CCcc---EEEEECCCCCEEEeeC
Confidence 8889999999999998776544 3452 5899999999999975
No 64
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.81 E-value=8.2e-19 Score=125.56 Aligned_cols=121 Identities=22% Similarity=0.233 Sum_probs=80.6
Q ss_pred CCCCCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCC--c-ceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCC
Q 047907 17 EPELPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFD--F-AGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSM 93 (153)
Q Consensus 17 ~~~~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (153)
.+.|.+++|+||+|.|+|++++++||+++|||++........ . ...|+.... ..+.+.. . .....++
T Consensus 138 ~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~-~~~~~g~ 207 (303)
T TIGR03211 138 LRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSN-KAHDIAF--------V-GDPEPGK 207 (303)
T ss_pred cCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCC-CCcccce--------e-cCCCCCc
Confidence 356778999999999999999999999999999865432111 0 122322111 1110000 0 0111134
Q ss_pred CceEEEEeCC---HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 94 DNHISFQCGN---MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 94 ~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++|+||.|+| +++++++|+++|+++...+..... + ..+++||+||+||+|||++
T Consensus 208 ~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~-~-~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 208 LHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGI-T-RGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred eEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCC-C-CceEEEEECCCCCEEEEec
Confidence 8999999986 555778999999998766554321 1 2348999999999999984
No 65
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.81 E-value=1.9e-18 Score=107.80 Aligned_cols=109 Identities=18% Similarity=0.263 Sum_probs=76.5
Q ss_pred EEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCHHH
Q 047907 27 HVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNMEA 106 (153)
Q Consensus 27 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di~~ 106 (153)
...|.|+|+++|++||++ |||++...... .-..+..++..+++....... + .....|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~~~~~~~~~~l~l~~~~~~~----~-----~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---GYMILRRGDLELHFFAHPDLD----P-----ATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---CEEEEEcCCEEEEEEecCcCC----C-----CCCcceEEEEeCCHHH
Confidence 357999999999999999 99998876531 123333455567776543110 0 1223579999999999
Q ss_pred HHHHHHHcCCeEEe------eccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 107 IEKRLKELDVKYIK------RTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 107 ~~~~l~~~G~~~~~------~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++++|+++|+++.. .+.....||.+ .++|+|||||+|||.++
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~--~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMR--EFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCcee--EEEEECCCCCEEEeecC
Confidence 99999999998531 11111224544 79999999999999985
No 66
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.81 E-value=3.1e-18 Score=105.51 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=75.9
Q ss_pred EEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEec---CeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCC
Q 047907 27 HVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSY---GVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGN 103 (153)
Q Consensus 27 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~d 103 (153)
+..|.|+|++++++||+++|||++..... ...++... ...+.+..... ......|++|.|+|
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~v~d 67 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDHG----WIATFASPQNMTVQVSLATEGG-----------TATVVPDLSIEVDD 67 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcCC----ceEEEeecCCCCcEEEEecCCC-----------CCCCCCEEEEEeCC
Confidence 34689999999999999999999875421 12222221 12233332211 01334689999999
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+++++++|+++|+++..++.... ||.+ .+++.||+||+|||++.+
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~~~-~g~~--~~~~~DP~Gn~i~~~~~~ 112 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPTDEP-WGVR--RFFVRDPFGKLVNILTHR 112 (112)
T ss_pred HHHHHHHHHhcCCeEecCCccCC-CceE--EEEEECCCCCEEEEEEcC
Confidence 99999999999999987665433 4543 699999999999999863
No 67
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.81 E-value=1.7e-18 Score=105.45 Aligned_cols=112 Identities=26% Similarity=0.397 Sum_probs=84.4
Q ss_pred EEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCHHH
Q 047907 27 HVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNMEA 106 (153)
Q Consensus 27 hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di~~ 106 (153)
|++|.|+|++++++||+++|||++............++..++..+++......... ....+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~------~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEGDEPAPA------PSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecCCCCCCc------ccCCCeeEEEEECCCHHH
Confidence 89999999999999999999999888763211233444444567777776554321 223677899999999999
Q ss_pred HHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEE
Q 047907 107 IEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEI 147 (153)
Q Consensus 107 ~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 147 (153)
+.++|.++|+.+..++.. ..++. +.+++.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~-~~~~~--~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPRE-EPWGG--RVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcC-CCCCc--EEEEEECCCCcEEeC
Confidence 999999999988776542 22233 489999999999986
No 68
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=2.8e-18 Score=105.99 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=74.0
Q ss_pred EEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCHHHH
Q 047907 28 VSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNMEAI 107 (153)
Q Consensus 28 v~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di~~~ 107 (153)
..|+|+|+++|++||++ |||++..+.. ...++..++..+.+....... .....+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~~~~l~~~~~~l~l~~~~~~~----------~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND----NLAYFRLGNCAFYLQDYYVKD----------WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC----CEEEEEcCCEEEEeecCCCcc----------cccCCEEEEEECCHHHH
Confidence 46889999999999988 9999987653 234554455555553321111 02235799999999999
Q ss_pred HHHHHHcCCeEEe-----eccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 108 EKRLKELDVKYIK-----RTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 108 ~~~l~~~G~~~~~-----~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
+++|+++|+++.. ++.. ..||.+ .++|+|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~-~~~g~r--~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPIT-QPWWGR--EFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccc-cCCCcE--EEEEECCCccEEEeeC
Confidence 9999999997532 2222 234554 7999999999999864
No 69
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=3.7e-18 Score=106.24 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=78.9
Q ss_pred EEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe---CCH
Q 047907 28 VSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC---GNM 104 (153)
Q Consensus 28 v~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v---~di 104 (153)
|.|.|+|++++.+||+++|||++..+.. . ...++..++..++++................+.+..|++|.+ +|+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 78 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-D--GVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEEEV 78 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-C--ceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHHHH
Confidence 6899999999999999999999876621 1 233444455566666543211111111112223445676665 689
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
+++++++++.|+++..++... +||.. .++++||+||+|||..
T Consensus 79 ~~~~~~l~~~G~~~~~~~~~~-~~g~~--~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 79 DAVLARAAAAGATIVKPPQDV-FWGGY--SGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHhCCCEEecCCccC-CCCce--EEEEECCCCCEEEEee
Confidence 999999999999997665433 34543 7999999999999975
No 70
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=8.2e-18 Score=105.34 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=73.0
Q ss_pred eEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCC---------cce----eeEEe----cCeEEEEeeecCCCCCCCCC
Q 047907 24 SLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFD---------FAG----AWLFS----YGVGVHLVQSNDEDKLSPPD 86 (153)
Q Consensus 24 ~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~---------~~~----~~~~~----~~~~~~l~~~~~~~~~~~~~ 86 (153)
++.|++|.|+|+++|++||+++|||++..+...++ +.. .++.. ....++|........
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~----- 76 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGD----- 76 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCC-----
Confidence 68899999999999999999999999876542111 111 22211 123466665333211
Q ss_pred CCCCCCCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 87 SAHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 87 ~~~~~~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
...+. .|++|.|++. ++.++|+++|+++...+. + .++++||||+.|||+.
T Consensus 77 -~~~g~--~~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 77 -YELGN--DFLGITIHSK-QAVSNAKKHNWPVTEVED-------G--VYEVKAPGGYKFYLID 126 (127)
T ss_pred -CCCCC--CEEEEEEECH-HHHHHHHHCCCceecCCC-------C--EEEEECCCCCEEEEec
Confidence 11222 3677777777 566999999998865332 1 6999999999999975
No 71
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.78 E-value=8.9e-18 Score=119.35 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=78.6
Q ss_pred ceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCC--C-C--cceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCce
Q 047907 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPA--F-D--FAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNH 96 (153)
Q Consensus 22 ~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~--~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h 96 (153)
..+|+||.|.|+|++++.+||+++|||++...... . + +...++..++....+.... ....++++|
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~----------~~~~~~~~H 209 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAA----------GPSEKRLNH 209 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEec----------CCCCCceEE
Confidence 57899999999999999999999999998764211 1 1 1133433222111111100 112367899
Q ss_pred EEEEeCCHHH---HHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 97 ISFQCGNMEA---IEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 97 l~f~v~di~~---~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++|+|+|+++ ++++|+++|+ ....+..... + ..+++|++||+||+||+.+.
T Consensus 210 iaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~-~-~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 210 LMLEVDTLDDVGLALDRVDADGI-VASTLGRHTN-D-HMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCC-C-CeEEEEEECCCCcEEEeecC
Confidence 9999988777 7999999999 4444443332 2 23489999999999999863
No 72
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.78 E-value=8.3e-18 Score=119.49 Aligned_cols=115 Identities=15% Similarity=0.226 Sum_probs=79.7
Q ss_pred ceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe
Q 047907 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC 101 (153)
Q Consensus 22 ~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v 101 (153)
+.++.|+.|.|+|+++|++||+++|||++...... ...|+..+.....+...... ..++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGEN---DALYLRLDSRAHRIAVHPGE-----------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCCC---ceEEEEcCCCceEEEEEECC-----------cCCeeeEeeee
Confidence 46899999999999999999999999997654321 22343333222222222111 13567899999
Q ss_pred CC---HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 102 GN---MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 102 ~d---i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++ ++++.++|+++|+++...+.......+..+.++|+|||||.|||+..
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~ 118 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYG 118 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEc
Confidence 88 88999999999999876543211101223479999999999999863
No 73
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.77 E-value=1.6e-17 Score=118.36 Aligned_cols=120 Identities=23% Similarity=0.370 Sum_probs=79.6
Q ss_pred CCCCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCC--CcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCc
Q 047907 18 PELPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAF--DFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDN 95 (153)
Q Consensus 18 ~~~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (153)
+.+.+++++|++|.|+|++++.+||+++|||++....... .....|+...+ ..+.+. . ....+++++
T Consensus 130 ~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~--~~~~~~~~~ 198 (294)
T TIGR02295 130 RGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG-GVHDIA--------L--TNGNGPRLH 198 (294)
T ss_pred CCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC-CcCceE--------e--ecCCCCcee
Confidence 3467899999999999999999999999999987653211 11122221111 000000 0 011236789
Q ss_pred eEEEEeCC---HHHHHHHHHHcCCe--EEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 96 HISFQCGN---MEAIEKRLKELDVK--YIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 96 hl~f~v~d---i~~~~~~l~~~G~~--~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|+||.|+| +++++++|+++|++ +...+..... +. .+++|++||+||+|||++.
T Consensus 199 Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~-~~-~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 199 HIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGV-SN-AFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCC-Cc-ceEEEEECCCCCEEEEEec
Confidence 99999988 45568999999997 4433433221 22 2479999999999999874
No 74
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.77 E-value=8.8e-18 Score=120.26 Aligned_cols=111 Identities=23% Similarity=0.319 Sum_probs=79.8
Q ss_pred ceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecC----eEEEEeeecCCCCCCCCCCCCCCCCCceE
Q 047907 22 LMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYG----VGVHLVQSNDEDKLSPPDSAHLDSMDNHI 97 (153)
Q Consensus 22 ~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~hl 97 (153)
+++++|+.|.|+|++++++||+++|||++..+.. ...++...+ ..+.+.. ....++.|+
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~----~~~~~~~~~~~~~~~~~l~~-------------~~~~g~~hi 64 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG----QRVYLKAWDEWDHYSVILTE-------------ADTAGLDHM 64 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC----ceEEEEeccccccceEeecc-------------CCCCceeEE
Confidence 5789999999999999999999999999876643 122332111 1111111 112568999
Q ss_pred EEEeC---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 98 SFQCG---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 98 ~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+|.|+ ++++++++|+++|+++...+.......+ +.+||+||+||+|||++..
T Consensus 65 af~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g--~~~~~~DPdG~~iEl~~~~ 119 (303)
T TIGR03211 65 AFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVG--RRVRFTLPSGHTMELYAEK 119 (303)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcc--eEEEEECCCCCEEEEEEcc
Confidence 99996 7899999999999998765432221122 3699999999999999854
No 75
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.75 E-value=3.8e-17 Score=116.47 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=79.5
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEec-Ce-EEEEeeecCCCCCCCCCCCCCCCCCceEE
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSY-GV-GVHLVQSNDEDKLSPPDSAHLDSMDNHIS 98 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~hl~ 98 (153)
++.+++|+.|.|+|++++++||+++|||++..+.. ...++... .. ...+.... ....+..|++
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~~~~~~~~~~~~~~~l~l~~-----------~~~~~~~hia 65 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----EYIYLRGIEEFQHHSLVLTK-----------APSAALSYIG 65 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----CeEEEeccCcCCceEEEeee-----------CCCcCccEEE
Confidence 36789999999999999999999999999876643 23333221 11 11111111 0125688999
Q ss_pred EEeC---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 99 FQCG---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 99 f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|.|+ |+++++++|+++|+++...+.. ++ .+++||+|||||.|||++.
T Consensus 66 f~v~~~~dl~~~~~~l~~~Gv~v~~~~~~---~~--~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 66 FRVSKEEDLDKAADFFQKLGHPVRLVRDG---GQ--PEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred EEeCCHHHHHHHHHHHHhcCCcEEeecCC---CC--ceEEEEECCCCCEEEEEEc
Confidence 9996 7899999999999998764321 12 2589999999999999874
No 76
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.1e-16 Score=100.70 Aligned_cols=130 Identities=22% Similarity=0.331 Sum_probs=86.8
Q ss_pred CCCCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCC--------------------CCC-cceeeEEecCeEEEEeee
Q 047907 18 PELPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPP--------------------AFD-FAGAWLFSYGVGVHLVQS 76 (153)
Q Consensus 18 ~~~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~--------------------~~~-~~~~~~~~~~~~~~l~~~ 76 (153)
..++...+.|..+++.|+.+|..||++++|+.+..... ... ....|.......+++...
T Consensus 16 ~~~~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn 95 (170)
T KOG2944|consen 16 SSTPTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHN 95 (170)
T ss_pred CCCchhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecC
Confidence 34556666777777777777777777777766654321 000 112444445556777665
Q ss_pred cCCCCCC--CCCCCCCCC-CCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 77 NDEDKLS--PPDSAHLDS-MDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 77 ~~~~~~~--~~~~~~~~~-~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
-...... ....++..+ |++||||.|+|++.++++|+++|+++...+.+ |..-..+++.||||++|||....
T Consensus 96 ~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~d----Gk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 96 WGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKD----GKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred CCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCC----ccccceeEEECCCCCeEEEeecC
Confidence 4443322 111223335 88999999999999999999999997665433 54335799999999999998754
No 77
>PLN02300 lactoylglutathione lyase
Probab=99.74 E-value=2.2e-16 Score=112.18 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=88.0
Q ss_pred CCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCC--CCCcceeeEEecC----eEEEEeeecCCCCCCCCCCCCCCCC
Q 047907 20 LPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPP--AFDFAGAWLFSYG----VGVHLVQSNDEDKLSPPDSAHLDSM 93 (153)
Q Consensus 20 ~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (153)
....++.|+.|.|+|++++.+||+++|||.+..... ..++...++...+ ..+++...... . ....+++
T Consensus 150 ~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~---~---~~~~g~~ 223 (286)
T PLN02300 150 PTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV---T---EYTKGNA 223 (286)
T ss_pred CCCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC---C---ccccCCc
Confidence 345678999999999999999999999999976432 2233334332211 12333221111 0 1122467
Q ss_pred CceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 94 DNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
..|++|.|+|+++++++++++|+++..+|...+ +...+.++|+||||+.++|++..+
T Consensus 224 ~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p--~~~~~~~~~~DPdG~~i~~~~~~~ 280 (286)
T PLN02300 224 YAQIAIGTDDVYKTAEAIKLVGGKITREPGPLP--GINTKITACLDPDGWKTVFVDNID 280 (286)
T ss_pred eeEEEEecCCHHHHHHHHHHcCCeEecCCccCC--CCceEEEEEECCCCCEEEEEccch
Confidence 889999999999999999999999988766544 222236889999999999999765
No 78
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.70 E-value=1.7e-15 Score=93.67 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=84.7
Q ss_pred CCCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecC--eEEEEeeecCCCCCCCCCCCCCCCCCce
Q 047907 19 ELPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYG--VGVHLVQSNDEDKLSPPDSAHLDSMDNH 96 (153)
Q Consensus 19 ~~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~h 96 (153)
.++...+.|..|+++|++++.+||.++|||.........++....+...+ ..-.+..... ...+++...
T Consensus 4 ~~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~~~~~---------~~p~~~~~~ 74 (127)
T COG3324 4 AGEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADGAGAGGGLMARPG---------SPPGGGGWV 74 (127)
T ss_pred cccCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCCccccceeccCCc---------CCCCCCCEE
Confidence 35567789999999999999999999999999877432222222222111 1111111110 111144556
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 97 ISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 97 l~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+-|.|+|+++..+|+.++|.+++.++...+. +++ .+.+.||+||+|-|.++.
T Consensus 75 iy~~v~did~~l~rv~~~GG~V~~p~~~~p~-~G~--~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 75 IYFAVDDIDATLERVVAAGGKVLRPKTEFPG-GGR--IAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred EEEecCChHHHHHHHHhcCCeEEecccccCC-ceE--EEEEECCCCCEEEEeecC
Confidence 8888999999999999999999988776554 333 599999999999999875
No 79
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.68 E-value=2.6e-15 Score=89.55 Aligned_cols=124 Identities=15% Similarity=0.195 Sum_probs=80.7
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEE--ecCeEEEEeeecCCCCCCCCCCCCCC--CCCceEE
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLF--SYGVGVHLVQSNDEDKLSPPDSAHLD--SMDNHIS 98 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~hl~ 98 (153)
+.+-|++|+|+|++++++||.++||+..-... ..|.. -.+.++.........+......+..+ .....+.
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRst------d~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvV 76 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRST------DTWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVV 76 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhccccccccc------ceEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEE
Confidence 34679999999999999999999999876653 23332 23333333332222211111111111 1223356
Q ss_pred EEeCCHHHHHHHHHHcCCeEEeeccccCC-CCCceeEEEEeCCCCCeEEEeecCC
Q 047907 99 FQCGNMEAIEKRLKELDVKYIKRTVKDDQ-SGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 99 f~v~di~~~~~~l~~~G~~~~~~~~~~~~-~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
+.++|..++.++|+++|+.+..+|.-... --+..+.+++.||.||.+|+-..++
T Consensus 77 l~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~ 131 (138)
T COG3565 77 LPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRD 131 (138)
T ss_pred EEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccc
Confidence 67799999999999999999877754432 1123458999999999999977654
No 80
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.66 E-value=9.1e-16 Score=94.16 Aligned_cols=96 Identities=24% Similarity=0.351 Sum_probs=72.9
Q ss_pred eEEEEEeCChHHHHHHHhHhcCcEEeeeCC--CCCcceeeEEecC--eEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe
Q 047907 26 NHVSRLCRNVEDSIDFYTKVLGFVLIERPP--AFDFAGAWLFSYG--VGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC 101 (153)
Q Consensus 26 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v 101 (153)
+||+|.|+|++++++||+++||+....... .......++..++ ..++|++....... ....++|++||||.|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~----~~~~~~gi~Hia~~v 76 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSP----LDRGGGGIHHIAFEV 76 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCH----HHHTSSEEEEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcc----cccCCCCEEEEEEEe
Confidence 699999999999999999999998765432 2334455665555 58999997765411 112458899999999
Q ss_pred CCHHHHHHHHHHcCCeEEeecccc
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKD 125 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~ 125 (153)
+|++++.++|+++|+++...+...
T Consensus 77 ~D~d~~~~~l~~~G~~~~~~~~~~ 100 (109)
T PF13669_consen 77 DDLDAAIARLEAQGFRVLDEGPRP 100 (109)
T ss_dssp SHHHHHHHHHHHTTECEEECEEEE
T ss_pred CCHHHHHHHHHHCCCEEcccCccc
Confidence 999999999999999998765433
No 81
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.66 E-value=1.4e-15 Score=92.02 Aligned_cols=123 Identities=21% Similarity=0.255 Sum_probs=86.0
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCC-CCCCCCCCCCCceEEEEe
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLS-PPDSAHLDSMDNHISFQC 101 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~hl~f~v 101 (153)
++.-.|+|+|+|+++|.+||+. |||+...+..+.. ...........+.|+......... .+......+.-.-+++.+
T Consensus 2 ~~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~-a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~ 79 (133)
T COG3607 2 TQMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED-AACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSA 79 (133)
T ss_pred ceEEEEecchhhHHHHHHHHHH-hCcccCCCccccc-ceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEecc
Confidence 3456789999999999999999 9999887764221 222333345566666655432222 222333345566788888
Q ss_pred ---CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 102 ---GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 102 ---~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
++++++.++..+.|.++..++... | .+|...|.|||||.||+..++
T Consensus 80 ~s~eevd~~v~ka~eaGGk~~~~~~d~---g-fMYg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 80 GSREEVDELVDKALEAGGKPANEPQDE---G-FMYGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCcccc---c-cccceeeeCCCCCeEEEEEeC
Confidence 578999999999999986665553 2 355788999999999998764
No 82
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.60 E-value=6.4e-14 Score=95.86 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=83.6
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEE
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~ 100 (153)
..+.+..+.|.|+|++++..||+++||+++..+.. ....+..++..+..+....... . +.....|+.|++|-
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~----~~v~L~vgg~~LL~L~q~~~a~--~--~~~~~aGLyH~AfL 78 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD----GSVTLGVGGTPLLTLEQFPDAR--R--PPPRAAGLYHTAFL 78 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC----ceEEEeeCCEEEEEEEeCCCCC--C--CCccccceeeeeee
Confidence 45788999999999999999999999999998864 3444444454333333222111 1 11234799999999
Q ss_pred eC---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 101 CG---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 101 v~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
++ |+..+..++.+.|+.+.. ..++. -+. .+||.||+||-||++..+
T Consensus 79 lP~r~~L~~~l~hl~~~~~~l~G-a~DH~--vSE--AlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 79 LPTREDLARVLNHLAEEGIPLVG-ASDHL--VSE--ALYLEDPEGNGIEIYADR 127 (265)
T ss_pred cCCHHHHHHHHHHHHhcCCcccc-cCcch--hhe--eeeecCCCCCeEEEEecC
Confidence 96 566677888899998853 22322 223 799999999999999753
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.52 E-value=5e-14 Score=94.56 Aligned_cols=101 Identities=20% Similarity=0.187 Sum_probs=70.6
Q ss_pred eeEeEEEEEeC--ChHHHHHHHhHhcCcEEeeeCCCCC----cceeeEEe--cCeEEEEeeecCCCCCCCC---CCCCCC
Q 047907 23 MSLNHVSRLCR--NVEDSIDFYTKVLGFVLIERPPAFD----FAGAWLFS--YGVGVHLVQSNDEDKLSPP---DSAHLD 91 (153)
Q Consensus 23 ~~i~hv~i~v~--d~~~s~~FY~~~lG~~~~~~~~~~~----~~~~~~~~--~~~~~~l~~~~~~~~~~~~---~~~~~~ 91 (153)
.+|+||++.|+ |++++++||+++|||+........+ .....+.. +...+.|.+.......... .....+
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G 81 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGG 81 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCC
Confidence 57999999999 9999999999999999877543211 11123332 2355666654432111000 012235
Q ss_pred CCCceEEEEeCCHHHHHHHHHHcCCeEEeecc
Q 047907 92 SMDNHISFQCGNMEAIEKRLKELDVKYIKRTV 123 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~ 123 (153)
+|++||||.|+|+++++++|+++|++++..|.
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 78999999999999999999999999987653
No 84
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.51 E-value=1.6e-13 Score=100.24 Aligned_cols=134 Identities=16% Similarity=0.251 Sum_probs=87.9
Q ss_pred CCCCCceeEeEEEEEeC--ChHHHHHHHhHhcCcEEeeeCCC-CCcc---eeeEEe--cCeEEEEeeecCCCCCCCC---
Q 047907 17 EPELPLMSLNHVSRLCR--NVEDSIDFYTKVLGFVLIERPPA-FDFA---GAWLFS--YGVGVHLVQSNDEDKLSPP--- 85 (153)
Q Consensus 17 ~~~~~~~~i~hv~i~v~--d~~~s~~FY~~~lG~~~~~~~~~-~~~~---~~~~~~--~~~~~~l~~~~~~~~~~~~--- 85 (153)
.+.|.+.+|+|+++.|. |++++++||+++|||++.....- .... ...+.. +...++|.+..........
T Consensus 151 ~~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~f 230 (353)
T TIGR01263 151 PPGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEF 230 (353)
T ss_pred CCCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHH
Confidence 34678899999999999 99999999999999998765421 1111 122222 3355777653221111100
Q ss_pred CCCCCCCCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccC-------CC--C------CceeEEEEeCCCCCeEEEeec
Q 047907 86 DSAHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDD-------QS--G------NAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 86 ~~~~~~~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~-------~~--g------~~~~~~~~~DPdG~~iel~~~ 150 (153)
.....++|++||||.|+|+++++++|+++|++++..|.... .+ . .....++=+|.+|+++.++..
T Consensus 231 l~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~ 310 (353)
T TIGR01263 231 LEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTK 310 (353)
T ss_pred HHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEecCCCceEEEEecc
Confidence 01223589999999999999999999999999987652110 00 0 011135667888888888764
No 85
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.50 E-value=8.5e-13 Score=96.44 Aligned_cols=103 Identities=13% Similarity=0.119 Sum_probs=73.0
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCC-CCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPA-FDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC 101 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v 101 (153)
++++|+.+.|+|++++++||.+.|||........ .......+..++..+++.................++++.|++|.|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V 80 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRV 80 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEE
Confidence 4689999999999999999999999999876211 111222334456677776644322111001112347899999999
Q ss_pred CCHHHHHHHHHHcCCeEEeecccc
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKD 125 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~ 125 (153)
+|++++++++.++|++++.++...
T Consensus 81 ~Dv~~a~~~l~~~Ga~~v~~p~~~ 104 (353)
T TIGR01263 81 DDAAAAFEAAVERGAEPVQAPVEL 104 (353)
T ss_pred CCHHHHHHHHHHCCCEeccCCccC
Confidence 999999999999999998776554
No 86
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.48 E-value=4.4e-12 Score=79.91 Aligned_cols=109 Identities=16% Similarity=0.075 Sum_probs=73.4
Q ss_pred EEEe-CChHHHHHHHhHhcCcEEeeeCCCC------------CcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCc
Q 047907 29 SRLC-RNVEDSIDFYTKVLGFVLIERPPAF------------DFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDN 95 (153)
Q Consensus 29 ~i~v-~d~~~s~~FY~~~lG~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (153)
.|.+ .|.+++++||+++||+++....... ....+.+..++..+.+......... ..+...
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~-------~~~~~~ 76 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPF-------TFGNGI 76 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCC-------CCCCCE
Confidence 4667 8999999999999999998654211 0123344445556666554322111 123455
Q ss_pred eEEEEeCC---HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 96 HISFQCGN---MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 96 hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
++++.|+| +++++++|.+.| +++.++... .||.+ ..+++||+|+.|+|.
T Consensus 77 ~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~-~~g~~--~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 77 SLSVECDSEEEADRLFEALSEGG-TVLMPLQKT-FWSPL--FGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEeccchhc-Ccccc--cEEEECCCCCEEEeC
Confidence 78888876 777889987766 776665544 57776 699999999999974
No 87
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.44 E-value=8e-13 Score=82.69 Aligned_cols=122 Identities=26% Similarity=0.355 Sum_probs=73.8
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcce---eeEEecCe--EEEEeeec-----CCCCCCCCCCCCCC-
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAG---AWLFSYGV--GVHLVQSN-----DEDKLSPPDSAHLD- 91 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~---~~~~~~~~--~~~l~~~~-----~~~~~~~~~~~~~~- 91 (153)
+++.|+.+.|+|+++|++||+++||++............ ........ ........ ..............
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 478999999999999999999999999988764221111 11110110 00110000 00000000000011
Q ss_pred --CCCceEEEEeCC---HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 92 --SMDNHISFQCGN---MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 92 --~~~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
.+..|++|.+++ +......+...|..+..... ..++. .+|++||||++||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~--~~~~~---~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP--GRGGV---HVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC--CCcce---EEEEECCCCcEEEeeC
Confidence 247899999987 66777777778888765443 22222 7999999999999975
No 88
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.38 E-value=4.8e-11 Score=75.13 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=79.2
Q ss_pred EEEeC-ChHHHHHHHhHhcCcEEeeeCCCCC------------cceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCc
Q 047907 29 SRLCR-NVEDSIDFYTKVLGFVLIERPPAFD------------FAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDN 95 (153)
Q Consensus 29 ~i~v~-d~~~s~~FY~~~lG~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (153)
-|..+ |-+++.+||+++||+++.......+ ...+-+..++..+.+........ ....++.-.
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~-----~~~~~~~s~ 79 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG-----ATEGGGTSL 79 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC-----cccCCCeeE
Confidence 46677 9999999999999999887653222 12333334455555544332211 111112334
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 96 HISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 96 hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
-|.+.++|++++++++.+.|+++..+.. ...||.+ +..++||.|+.|-|.+..
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~-~~fwG~r--~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLE-DTFWGDR--YGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecch-hcCcccc--eEEEECCCCCEEEEecCc
Confidence 5777778899999999999988877554 4457888 599999999999998764
No 89
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.36 E-value=7.4e-12 Score=89.19 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=71.6
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEE
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQ 100 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~ 100 (153)
.--+.-||+|+|+|+++|.+||+++|++.. ...+ ....+ ++.-+.++....+. ......-+|+.
T Consensus 244 ~~~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde----~a~cm--~dtI~vMllt~~D~---------~~~~evLl~Ls 307 (357)
T PRK01037 244 FSPKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD----KLFLL--GKTSLYLQQTKAEK---------KNRGTTTLSLE 307 (357)
T ss_pred cCCceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC----ccccc--cCcEEEEEecCCCC---------CCcceEEEEec
Confidence 344566999999999999999999988875 3322 11222 33222222222211 11333458888
Q ss_pred e---CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 101 C---GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 101 v---~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+ +++|++.++..++|.+...++.++ |. .--|.|||||.||+++.+
T Consensus 308 ~~Sre~VD~lv~~A~aaGG~~~~~~~D~---Gf---~rsf~D~DGH~WEi~~~~ 355 (357)
T PRK01037 308 LECEHDFVRFLRRWEMLGGELGEQADGH---FP---LRLVFDLDGHIWVVSCVQ 355 (357)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCCCcccc---cC---cceeECCCCCEEEEEEEe
Confidence 8 468889999999999775544443 32 245999999999999754
No 90
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.30 E-value=7.9e-12 Score=91.60 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=87.4
Q ss_pred CCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCC-------cceeeEEec--CeEEEEeeecCCCCCCCC----C
Q 047907 20 LPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFD-------FAGAWLFSY--GVGVHLVQSNDEDKLSPP----D 86 (153)
Q Consensus 20 ~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~-------~~~~~~~~~--~~~~~l~~~~~~~~~~~~----~ 86 (153)
..+.+|+||++.|.+++.++.||+++|||.........+ .....+..+ ...+.|.+.........+ .
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL 255 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYL 255 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHH
Confidence 446899999999999999999999999998876443211 112222232 255777765431111111 1
Q ss_pred CCCCCCCCceEEEEeCCHHHHHHHHHHc----CCeEEeec-c-cc------CCC---C------CceeEEEEeCCCCCeE
Q 047907 87 SAHLDSMDNHISFQCGNMEAIEKRLKEL----DVKYIKRT-V-KD------DQS---G------NAIDQMFFDDPDGFMI 145 (153)
Q Consensus 87 ~~~~~~~~~hl~f~v~di~~~~~~l~~~----G~~~~~~~-~-~~------~~~---g------~~~~~~~~~DPdG~~i 145 (153)
....++|++||||.|+||.++.++|+++ |++++..| . .. .+. . .....++=+|.+|+++
T Consensus 256 ~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~~G~LL 335 (398)
T PLN02875 256 EHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLL 335 (398)
T ss_pred HhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCCCceEE
Confidence 3344689999999999999999999999 99998854 1 10 110 0 1112456777789988
Q ss_pred EEeec
Q 047907 146 EICNC 150 (153)
Q Consensus 146 el~~~ 150 (153)
.|+..
T Consensus 336 QIFTk 340 (398)
T PLN02875 336 QIFTK 340 (398)
T ss_pred EEecc
Confidence 88764
No 91
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=1e-09 Score=74.06 Aligned_cols=123 Identities=16% Similarity=0.221 Sum_probs=83.7
Q ss_pred CCCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEec--CeEEEEeeecCCCCCCCCCCCCCCCCCce
Q 047907 19 ELPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSY--GVGVHLVQSNDEDKLSPPDSAHLDSMDNH 96 (153)
Q Consensus 19 ~~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~h 96 (153)
....-.+..|.+.|.|+++|++||.+.||+++..... .+....+..+ ...++|....+.... ..+...
T Consensus 144 ~p~s~pv~~V~l~VgdL~ks~kyw~~~lgM~ilekee--k~t~~~mgYgd~q~~LElt~~~~~id~--------~kg~gr 213 (299)
T KOG2943|consen 144 GPQSDPVLQVMLNVGDLQKSIKYWEKLLGMKILEKEE--KYTRARMGYGDEQCVLELTYNYDVIDR--------AKGFGR 213 (299)
T ss_pred CCCCCCeEEEEEEehhHHHHHHHHHHHhCcchhhhhh--hhhhhhhccCCcceEEEEEeccCcccc--------ccccee
Confidence 3344568899999999999999999999999987532 1233333322 355777766553221 134445
Q ss_pred EEEEe--CCHHHHHHHHHHcCCeEEeeccccC-CCCCceeEEEEeCCCCCeEEEeecC
Q 047907 97 ISFQC--GNMEAIEKRLKELDVKYIKRTVKDD-QSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 97 l~f~v--~di~~~~~~l~~~G~~~~~~~~~~~-~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
++|.+ +++..+.+.++..+.++..+..... +.+..+..+-+.||||+.|.++...
T Consensus 214 iafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde 271 (299)
T KOG2943|consen 214 IAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDE 271 (299)
T ss_pred EEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccH
Confidence 77777 7787888888877766665543332 2244566789999999999998754
No 92
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.07 E-value=1.1e-09 Score=76.75 Aligned_cols=122 Identities=11% Similarity=0.157 Sum_probs=80.5
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeC----CCCCcceeeEEecCeEEEEeeecCCCCCCCCC-CCCCCCCCc
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERP----PAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPD-SAHLDSMDN 95 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 95 (153)
...+++||.+.|.|...++.||+..|||++.... ....+....+..++..+.+.....+....... ....+.++.
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 5688999999999999999999999999987633 11222233333333333333322221111110 011234567
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCC
Q 047907 96 HISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDG 142 (153)
Q Consensus 96 hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG 142 (153)
-+||+|+|.+++.+.+.++|+++..+|.+....-+.+++..++.+.-
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd 140 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGD 140 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccc
Confidence 79999999999999999999999988776654344455676766653
No 93
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=3.6e-09 Score=71.46 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=78.1
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCC--C-----------CCcceeeEEecC----eEEEEeeecCCCCCC
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPP--A-----------FDFAGAWLFSYG----VGVHLVQSNDEDKLS 83 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~--~-----------~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 83 (153)
...+.-|+.+.|.|..++++||+++||+++....+ + ..|..+.+..+. .-++|.......
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~--- 90 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVS--- 90 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcc---
Confidence 45678899999999999999999999999986532 1 123333333332 224444433221
Q ss_pred CCCCCCCCCCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 84 PPDSAHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 84 ~~~~~~~~~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
.+..+.++.|+.+.++|+-...+.+...|.+ +++...+++.||||+.++|.+
T Consensus 91 ---~YelGndfg~i~I~s~dv~~~ve~v~~p~~~-----------~~g~~~~~v~dPdGykF~l~~ 142 (299)
T KOG2943|consen 91 ---KYELGNDFGGITIASDDVFSKVEKVNAPGGK-----------GSGCGIAFVKDPDGYKFYLID 142 (299)
T ss_pred ---ceeccCCcccEEEeHHHHHHHHHHhcCcCCc-----------ccceEEEEEECCCCcEEEEec
Confidence 2345678899999999988888888776652 222225899999999999985
No 94
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.98 E-value=1.4e-08 Score=74.85 Aligned_cols=126 Identities=10% Similarity=0.100 Sum_probs=83.8
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCC----CCcceeeEEecCeEEEEeeecCCC--------CCCCCCC-----
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPA----FDFAGAWLFSYGVGVHLVQSNDED--------KLSPPDS----- 87 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~----- 87 (153)
++||.++|.|..+++.||+..|||+.+..... .......+..++..+.+.....+. ..+.+.+
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 58999999999999999999999999875531 111233444555555555542220 0000000
Q ss_pred ------CCCCCCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCC--CCceeEEEEeCCCCCeEEEeec
Q 047907 88 ------AHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQS--GNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 88 ------~~~~~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~--g~~~~~~~~~DPdG~~iel~~~ 150 (153)
...++++.-++|+|+|++.+++++.++|+++..++...... ++.....-++-+.|.++-|++.
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr 151 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY 151 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc
Confidence 11247888899999999999999999999998876654221 1223455577777777777764
No 95
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.98 E-value=1.2e-08 Score=70.33 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=58.2
Q ss_pred CCCCCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCce
Q 047907 17 EPELPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNH 96 (153)
Q Consensus 17 ~~~~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h 96 (153)
......+.|.||+|.|.|++++.+||+++|||+...+.+ ...|+..++-..++...........+. .....|+..
T Consensus 161 ~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~----~A~F~a~G~YHHHia~N~W~s~~~~~~-~~~~~GLa~ 235 (265)
T COG2514 161 TGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP----SALFLASGDYHHHLAANTWNSRGARPR-NANASGLAW 235 (265)
T ss_pred ccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC----cceEEecCCcceeEEEeccccCCCCCC-CCCCCCcce
Confidence 344567889999999999999999999999999998843 456666666666666655544333322 222367777
Q ss_pred EEEEeCC
Q 047907 97 ISFQCGN 103 (153)
Q Consensus 97 l~f~v~d 103 (153)
+.+.+.+
T Consensus 236 ~~i~~~~ 242 (265)
T COG2514 236 LEIHTPD 242 (265)
T ss_pred EEEEcCC
Confidence 7777755
No 96
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.96 E-value=9.4e-09 Score=65.08 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=82.3
Q ss_pred CCCCCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCce
Q 047907 17 EPELPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNH 96 (153)
Q Consensus 17 ~~~~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h 96 (153)
.++|...++.+|.+.+.+.+++..|++. |||....+..+. ....+..++..+.|...++.. ...-...-++++.-
T Consensus 2 ~nP~g~~G~dFvEFa~~~~~~l~~~~~~-lGF~~~a~hrsk--~v~l~rQG~I~~vln~ep~s~--a~~~~~~HG~sv~a 76 (139)
T PF14696_consen 2 DNPLGLDGFDFVEFAVPDAQALAQLFTA-LGFQPVARHRSK--DVTLYRQGDINFVLNSEPDSF--AAEFAAQHGPSVCA 76 (139)
T ss_dssp --TT-EEEEEEEEEE-SSTTSCHHHHCC-CCEEEECCECCC--SEEEEEETTEEEEEEEESTSC--HHHHHHHHSSEEEE
T ss_pred CCCCCCCCeEEEEEecCCHHHHHHHHHH-hCcceEEecCCc--ceEEEEeCCEEEEEeCCCcch--HHHHHHhcCCEEEE
Confidence 3679999999999999998888888865 999999876432 334455667777776543211 10001112467788
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 97 ISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 97 l~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|+|+|+|.+.+++++.++|.+...++... + ....--|+.+.|-++-|++.
T Consensus 77 iafrV~Da~~A~~rA~~~GA~~~~~~~~~---~-e~~~paI~g~G~sl~yfVdr 126 (139)
T PF14696_consen 77 IAFRVDDAAAAYERAVALGAEPVQEPTGP---G-ELNIPAIRGIGGSLHYFVDR 126 (139)
T ss_dssp EEEEES-HHHHHHHHHHTT--EEEEEEET---T--BEEEEEE-CCC-EEEEEE-
T ss_pred EEEEeCCHHHHHHHHHHcCCcCcccCCCC---C-cEeeeeEEccCCCEEEEEec
Confidence 99999999999999999999998876543 2 23356788888888888875
No 97
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.93 E-value=1.5e-07 Score=57.20 Aligned_cols=115 Identities=23% Similarity=0.167 Sum_probs=62.7
Q ss_pred eEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCHH
Q 047907 26 NHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNME 105 (153)
Q Consensus 26 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di~ 105 (153)
.+-.|.|+|-+...+||++.|||++..... ..+++......-.++-..++........+. -.+.++.+.|++.+
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn----a~a~lg~~~~~erlvlEESP~~rtr~V~G~--KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN----ALAILGDQQKEERLVLEESPSMRTRAVEGP--KKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET----TEEEEE-TT--EEEEEEE--TTT-B--SSS---SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc----cEEEecCCCCceEEEEecCCccccccccCc--ceeeEEEEEcCCHH
Confidence 356899999999999999999999998765 556665533222222222322222121111 35788999998866
Q ss_pred HHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 106 AIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 106 ~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
++. .|.++|.++.. ... |...+.|-..+|+|.+|.|...++
T Consensus 76 EIe-~LLar~~~~~~-l~k----g~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 76 EIE-ALLARGAQYDR-LYK----GKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp HHH-HHHHC-S--SE-EEE-----SSSEEEEEE-TT--EEEEE--S-
T ss_pred HHH-HHHhcccccce-eEE----cCCceEEEEECCCCCEEEEEEcCC
Confidence 543 44566665422 111 444457889999999999988654
No 98
>PRK10148 hypothetical protein; Provisional
Probab=98.89 E-value=3.9e-07 Score=58.72 Aligned_cols=111 Identities=14% Similarity=0.033 Sum_probs=70.2
Q ss_pred EEEeC-ChHHHHHHHhHhcCcEEeeeCC----------------------CCCcceeeEEecCeEEEEeeecCCCCCCCC
Q 047907 29 SRLCR-NVEDSIDFYTKVLGFVLIERPP----------------------AFDFAGAWLFSYGVGVHLVQSNDEDKLSPP 85 (153)
Q Consensus 29 ~i~v~-d~~~s~~FY~~~lG~~~~~~~~----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (153)
-|..+ |-+++.+||+++||.++..... ......+.+..++..+.+..... ..
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~--~~--- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIP--SG--- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCC--Cc---
Confidence 45554 8999999999999988864321 01112334444454444433211 10
Q ss_pred CCCCCCCCCceEEEEeCCHHH---HHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 86 DSAHLDSMDNHISFQCGNMEA---IEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 86 ~~~~~~~~~~hl~f~v~di~~---~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
.......++++.++|.++ ++++| +.|.+++.+..+ ..||.+ +..++||.|+.|.|...+
T Consensus 81 ---~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~-~~wg~~--~g~v~D~fGi~W~l~~~~ 142 (147)
T PRK10148 81 ---KAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQE-TFWAHG--FGKVTDKFGVPWMINVVK 142 (147)
T ss_pred ---CCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchh-cchhhc--cEEEECCCCCEEEEEecC
Confidence 011124567788788776 55666 688888766554 457876 599999999999998764
No 99
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.80 E-value=4.7e-08 Score=64.81 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=59.9
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCC--cceeeEEecCeEEEEeeecCCCCCC-CCCC-----CCCCCCCce
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFD--FAGAWLFSYGVGVHLVQSNDEDKLS-PPDS-----AHLDSMDNH 96 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~-----~~~~~~~~h 96 (153)
|+|+.+.|+|++++.++|++.|||.+.....-.. -.-..+.-++..+|++......... .... ...+.|..+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999998889999987543222 1222222344599999964332211 0100 013578899
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCC
Q 047907 97 ISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDP 140 (153)
Q Consensus 97 l~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DP 140 (153)
+||.++|+++..++|++.|+.... +......-..++.+++.++
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~~~~-r~~~dG~~~~w~~~~~~~~ 123 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLDAGS-RVRPDGGDLRWRLAFPEDG 123 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-EEEE-EEEEEE-EEEEEEEEEE-S
T ss_pred EEEecCCHHHHHHHHHhcCCCCCC-cCcCCCCcceEEEEEeCCc
Confidence 999999999999999999986322 2222210124455666664
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.59 E-value=3.6e-08 Score=70.28 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=71.2
Q ss_pred CCCCCceeEeEEEEEeC--ChHHHHHHHhHhcCcEEeeeCCC-CCcce---eeEE--ecCeEEEEeeecCCCCCC-CCCC
Q 047907 17 EPELPLMSLNHVSRLCR--NVEDSIDFYTKVLGFVLIERPPA-FDFAG---AWLF--SYGVGVHLVQSNDEDKLS-PPDS 87 (153)
Q Consensus 17 ~~~~~~~~i~hv~i~v~--d~~~s~~FY~~~lG~~~~~~~~~-~~~~~---~~~~--~~~~~~~l~~~~~~~~~~-~~~~ 87 (153)
.....+..|+|++..|. .++.+..||+.+|||.......- ..... ..+. .+...+-|-...++.+.. .-..
T Consensus 160 ~~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~ 239 (363)
T COG3185 160 SGGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLR 239 (363)
T ss_pred ccccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHH
Confidence 34456789999986664 99999999999999998765421 11111 1111 123445554444433210 0012
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHcCCeEEeecc
Q 047907 88 AHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTV 123 (153)
Q Consensus 88 ~~~~~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~ 123 (153)
...+.|+.||+|.++||-++.++|+++|+++...|.
T Consensus 240 ~y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 240 EYRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred HhCCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 234579999999999999999999999999986553
No 101
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.06 E-value=9.9e-05 Score=53.13 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=76.9
Q ss_pred cCCCCCCceeEeEEEEEeCCh-HHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCC
Q 047907 15 EKEPELPLMSLNHVSRLCRNV-EDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSM 93 (153)
Q Consensus 15 ~~~~~~~~~~i~hv~i~v~d~-~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (153)
....++..+++.+|.+.|.|. ++..+++.. |||......... .......++.++.+...+.. ....-....+++
T Consensus 13 ~~~~P~~~~GfeFvEf~~~d~~~~l~~l~~~-lGF~~~~~Hrsk--~v~l~rQGdinlvvn~~~~s--~a~~f~~~Hgps 87 (363)
T COG3185 13 TLANPEGTDGFEFVEFAVPDPQEALGALLGQ-LGFTAVAKHRSK--AVTLYRQGDINLVVNAEPDS--FAAEFLDKHGPS 87 (363)
T ss_pred cccCCCCCCceeEEEEecCCHHHHHHHHHHH-hCcccccccccc--ceeEEEeCCEEEEEcCCCcc--hhhHHHHhcCCc
Confidence 345567799999999999999 666666666 999998775432 22222334455555443332 121112233467
Q ss_pred CceEEEEeCCHHHHHHHHHHcCCeEEeecccc--------CCCCCceeEEEEeCCC
Q 047907 94 DNHISFQCGNMEAIEKRLKELDVKYIKRTVKD--------DQSGNAIDQMFFDDPD 141 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~--------~~~g~~~~~~~~~DPd 141 (153)
..-++|.|+|...++++.++.|.+....+.-+ ..-|+. .+||.|.+
T Consensus 88 ~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggs--llyfvd~~ 141 (363)
T COG3185 88 ACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGS--LLYFVDRY 141 (363)
T ss_pred hheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCc--EEEEeccC
Confidence 77899999999999999999999554433210 011223 57888877
No 102
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.06 E-value=3.9e-06 Score=59.28 Aligned_cols=133 Identities=16% Similarity=0.197 Sum_probs=84.2
Q ss_pred CCCCceeEeEEEEEeC--ChHHHHHHHhHhcCcEEeeeCCCCCcce-------eeEEecCeEEEEeeecC--CCCCCCC-
Q 047907 18 PELPLMSLNHVSRLCR--NVEDSIDFYTKVLGFVLIERPPAFDFAG-------AWLFSYGVGVHLVQSND--EDKLSPP- 85 (153)
Q Consensus 18 ~~~~~~~i~hv~i~v~--d~~~s~~FY~~~lG~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~--~~~~~~~- 85 (153)
+.+.+.+++|+...++ .++.+.+||.+.|||.--+..++..... ..+.+....+.+..... .......
T Consensus 172 ~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQI 251 (381)
T KOG0638|consen 172 PKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQI 251 (381)
T ss_pred CccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHH
Confidence 3477889999999999 7899999999999998766544222111 11112222222221111 1111011
Q ss_pred ---CCCCCCCCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCC------------------CCceeEEEEeCCCCCe
Q 047907 86 ---DSAHLDSMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQS------------------GNAIDQMFFDDPDGFM 144 (153)
Q Consensus 86 ---~~~~~~~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~------------------g~~~~~~~~~DPdG~~ 144 (153)
.....++|+.|+++.++||=++.+.|+++|++++.+|...... -.....+.=.|-.|++
T Consensus 252 qeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyL 331 (381)
T KOG0638|consen 252 QEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYL 331 (381)
T ss_pred HHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEE
Confidence 1345678999999999999999999999999998665322100 0111245566777899
Q ss_pred EEEeec
Q 047907 145 IEICNC 150 (153)
Q Consensus 145 iel~~~ 150 (153)
+.|+..
T Consensus 332 LQIFTK 337 (381)
T KOG0638|consen 332 LQIFTK 337 (381)
T ss_pred eeeecc
Confidence 888764
No 103
>PF15067 FAM124: FAM124 family
Probab=97.49 E-value=0.0016 Score=44.50 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=61.4
Q ss_pred eEeEEEEEeC--ChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEe---cCeEEEEeeecCCCC-CCCCCCCCCCCCCceE
Q 047907 24 SLNHVSRLCR--NVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFS---YGVGVHLVQSNDEDK-LSPPDSAHLDSMDNHI 97 (153)
Q Consensus 24 ~i~hv~i~v~--d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~hl 97 (153)
.+--++|+|+ |.+.+++||+-+|+-+...+..+ -.++.. .+..+.+.-..-+.. .+.+.. -.-+
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~----FC~F~lys~~~~~iQlsLK~lp~~~~p~p~e------savL 197 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKED----FCFFTLYSQPGLDIQLSLKQLPPGMSPEPTE------SAVL 197 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCC----cEEEEEecCCCeEEEEEeccCCCCCCccccc------ceEE
Confidence 4556789999 99999999999999888766542 233322 234444444333221 122211 2339
Q ss_pred EEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEE
Q 047907 98 SFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEI 147 (153)
Q Consensus 98 ~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 147 (153)
.|+|.|+-++.--| -..+..+. .++ -...|||||.|-+
T Consensus 198 qF~V~~igqLvpLL-Pnpc~PIS--------~~r---WqT~D~DGNkILL 235 (236)
T PF15067_consen 198 QFRVEDIGQLVPLL-PNPCSPIS--------ETR---WQTEDYDGNKILL 235 (236)
T ss_pred EEEecchhhhcccC-CCCccccc--------CCc---ceeeCCCCCEecc
Confidence 99999988776544 22232221 112 3489999999854
No 104
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=97.31 E-value=0.0015 Score=39.75 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=40.5
Q ss_pred ceEEEEeCCHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeCCCC-CeEEEeecC
Q 047907 95 NHISFQCGNMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDDPDG-FMIEICNCE 151 (153)
Q Consensus 95 ~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~DPdG-~~iel~~~~ 151 (153)
+|++|.|.|++++.+.+.+ .|++........ ...++..++..++| ..|||+++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~---~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDE---PQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEG---CTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecC---CCCEEEEEEEeCCCcEEEEEEEeC
Confidence 5999999999999999998 898865443222 33445677888888 689999874
No 105
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.30 E-value=0.01 Score=36.67 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=54.1
Q ss_pred CChHHHHHHHhHhcCcE-Eeee--CCC--C----CcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCC
Q 047907 33 RNVEDSIDFYTKVLGFV-LIER--PPA--F----DFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGN 103 (153)
Q Consensus 33 ~d~~~s~~FY~~~lG~~-~~~~--~~~--~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~d 103 (153)
.+-++|.+||.++||-. +... .++ + ....+.+..++..+.......... .+....+++.+++
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~~~---------~~~~~sl~i~~~~ 81 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPDFP---------FGNNISLCIECDD 81 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS-------------TTEEEEEEESS
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCCCC---------CCCcEEEEEEcCC
Confidence 68999999999999843 2221 111 0 112344445566666655541111 0223557777766
Q ss_pred H---HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 104 M---EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 104 i---~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
. +.++++|.+.|- |... +..+.|.-|..|.|+
T Consensus 82 ~ee~~~~f~~Ls~gG~-----------~~~~--~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 82 EEEIDRIFDKLSEGGQ-----------WFSR--YGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHHHTTTE-----------TCCE--EEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHHHcCCC-----------ccce--eEEEEeCCCCEEEeC
Confidence 5 556677766665 2433 689999999999985
No 106
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.49 E-value=0.017 Score=34.58 Aligned_cols=92 Identities=15% Similarity=0.259 Sum_probs=41.1
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeC
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCG 102 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~ 102 (153)
-.+..+.|.|.| +++++||.++||-.. ...+.+.+...+..... ....=++-.+-|.|+
T Consensus 4 F~~e~i~LNV~d-~~~~~fy~~~f~~~~-----------------~~~l~f~ea~G~DL~~~---~~~twDLe~Lkf~V~ 62 (101)
T PF14507_consen 4 FEFESIELNVPD-AKSQSFYQSIFGGQL-----------------PFFLTFQEAQGPDLTIE---NNETWDLEMLKFQVP 62 (101)
T ss_dssp EEE-EEEEEE-T--T---S--H---HHH-----------------TTTEEEEE---CCGSS----TTSBSSEEEEEEEES
T ss_pred eEEEEEEEeCCC-hhHHHHHHhccccCC-----------------CceEEEeeccCCccccC---CCcEEeeEEEEEEec
Confidence 356788999999 889999999886211 12233333333221111 111124556788886
Q ss_pred ---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 103 ---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 103 ---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
|+.++.+++.+.++ ++.. ... ++.+.||.|.-|
T Consensus 63 ~~~Dl~~L~~~le~~~~-fidK-------k~k--~l~~~Dps~IEl 98 (101)
T PF14507_consen 63 KDFDLAALKSHLEEQEF-FIDK-------KEK--FLVTSDPSQIEL 98 (101)
T ss_dssp -S--HHHHHHHTTTS-E-E--T-------T-S--EEEEE-TTS-EE
T ss_pred CcccHHHHHHHhcccce-EecC-------Cce--EEEEECCcceEE
Confidence 77888888888444 2111 222 699999998654
No 107
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=96.30 E-value=0.029 Score=35.39 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=39.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCC--------CCCceeEEEEeCCCC-CeEEEeec
Q 047907 93 MDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQ--------SGNAIDQMFFDDPDG-FMIEICNC 150 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~--------~g~~~~~~~~~DPdG-~~iel~~~ 150 (153)
+++|+++.|.|+++..+...+.|.++......... .+......++..|+| ..|||+++
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~ 69 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKF 69 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEe
Confidence 57899999999999999998899987543211110 012233455666655 57888874
No 108
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=95.90 E-value=0.085 Score=34.43 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=41.4
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEeeccc--c-------------CCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIKRTVK--D-------------DQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~--~-------------~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
.++.|+++.|.|+++..+..++ .|.++...+.. . ...+......++..++|..||++++.
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 4678999999999999999976 69877532110 0 00012244566776788889999875
No 109
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=95.38 E-value=0.019 Score=37.93 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=31.2
Q ss_pred CceEEEEeCCHHHHHHHH-HHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 94 DNHISFQCGNMEAIEKRL-KELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l-~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+.|+.+.|.|++++.+++ +..|+++... ..+..+|.....++| ++| .|||+..+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~g-g~h~~~GT~N~li~f--~~~-YlEli~i~ 55 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPG-GEHPGWGTANALIPF--GDG-YLELIAID 55 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEE-EE-TTT-EEEEEEE---SSS-EEEEEEES
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCC-CcCCCCccEEEEEee--CCc-eEEEEEeC
Confidence 369999999999999999 8889998754 444445666545555 777 99998753
No 110
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=95.35 E-value=0.22 Score=30.30 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=37.8
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeCC---CCCeEEEeec
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDDP---DGFMIEICNC 150 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~DP---dG~~iel~~~ 150 (153)
+++|+++.|.|++++.+...+ .|++......... +...+..++... .|..++|+..
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~l~~~ 60 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQD--DPGTYHLFFGDGLGSPGTLLTFFEW 60 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccC--CCceEEEEEecCCCCCCCEEEEEec
Confidence 468999999999999999976 6998765432211 111224555554 5777888764
No 111
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=95.25 E-value=0.27 Score=29.81 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=37.0
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
+++|+++.|.|++++.+...+ .|+.+........ +..+ .+.+..+++..++++..
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~--~~~~-~~~~~~~~~~~i~l~~~ 58 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPE--RGSY-KLDLLLNGGYQLELFSF 58 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCC--CCcE-EEEEecCCCcEEEEEEc
Confidence 678999999999999999974 7998765432211 1222 24445566777887654
No 112
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.22 E-value=0.45 Score=30.38 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=59.9
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcC-cEEe--eeCC-------CCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCC
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLG-FVLI--ERPP-------AFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHL 90 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG-~~~~--~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 90 (153)
++.++.-..+.-.+.+++.+||..+|- -++. .+.+ ......+.+...+..+..+..........
T Consensus 2 ~~~kit~~L~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~f~f------ 75 (151)
T COG3865 2 MMPKITPFLWFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNTSFKF------ 75 (151)
T ss_pred CCCcceeEEEECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCcCCCc------
Confidence 444555555555899999999999874 3332 1111 11122233334455555554433211111
Q ss_pred CCCCceEEEEe--C---CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 91 DSMDNHISFQC--G---NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 91 ~~~~~hl~f~v--~---di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
.-. ++|.| + .+|.+..+|...|.+. . . ..+++|--|.-|.|+-
T Consensus 76 -neA--~S~~v~~~~q~E~Drlwnal~~~g~e~----------~-~--cgW~kDKfGVSWQi~p 123 (151)
T COG3865 76 -NEA--FSFQVACDDQEEIDRLWNALSDNGGEA----------E-A--CGWLKDKFGVSWQIVP 123 (151)
T ss_pred -Ccc--EEEEEEcCCHHHHHHHHHHHhccCcch----------h-c--ceeEecccCcEEEEcH
Confidence 111 55555 3 4677778888887721 1 1 4789999999998863
No 113
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=94.53 E-value=0.3 Score=32.88 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=41.0
Q ss_pred CCceEEEEeC--CHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeCCCC-CeEEEeecC
Q 047907 93 MDNHISFQCG--NMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDDPDG-FMIEICNCE 151 (153)
Q Consensus 93 ~~~hl~f~v~--di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~DPdG-~~iel~~~~ 151 (153)
++.|+++.|. |++++.+...+ .|.+.......... ....++..+..|+| ..++|.++.
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~-~~~~~s~~l~~~~g~i~l~L~~~~ 64 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDP-YSGLRSRVLASPDGKIRIPLNEPA 64 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcC-cccEEEEEEECCCCcEEEEEecCC
Confidence 5789999998 99999999865 79987654322211 23445678888864 568888754
No 114
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=94.49 E-value=0.26 Score=28.34 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
..+++.+.+.+.|+++..-..+. ++ .+.+...|.+|+.+|+.-.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~---~g-~yev~~~~~dG~~~ev~vD 73 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDD---DG-CYEVEARDKDGKKVEVYVD 73 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcC---CC-EEEEEEEECCCCEEEEEEc
Confidence 68999999999999775544422 22 2589999999999999753
No 115
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=94.02 E-value=0.35 Score=31.37 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=37.0
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCc-ceeeEEecC-eEEEEe
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDF-AGAWLFSYG-VGVHLV 74 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~-~~~~l~ 74 (153)
.+++||+|.|.|+.+++.-+++ +|.+.......... ..+++...+ ..+++.
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~dGk~K~iaF~~dpDgywiei~ 166 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLKDGKMKPIAFLHDPDGYWIEIE 166 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCCCccccceeEEECCCCCeEEEe
Confidence 6899999999999999999999 99987766654444 344444433 344443
No 116
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.36 E-value=0.76 Score=28.12 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=34.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHc----CCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 93 MDNHISFQCGNMEAIEKRLKEL----DVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~~----G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+++|+.+.|.|++++.+...+. |.++..... +. ..|+...++..++|++..
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~-----~~---~~~~~~~~~~~i~l~~~~ 55 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE-----DG---RSWRAGDGGTYLVLQQAD 55 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec-----cC---ceEEecCCceEEEEEecc
Confidence 5789999999999999999876 888765431 11 122322455667776543
No 117
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.32 E-value=1 Score=27.26 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=34.4
Q ss_pred CceEEEEeCCHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 94 DNHISFQCGNMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++|+++.|.|+++..+...+ .|.++......... +.. ..++.-.+|..+++++.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~ 56 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRK-GFE--SYFLSFDDGARLELMTR 56 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCC-Cce--EEEEecCCCcEEEEEcC
Confidence 57999999999999999977 58876432111111 212 23343346778888754
No 118
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.87 E-value=0.43 Score=26.80 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
+..+.+.+...|+.+....+.... +.....||+.|++|+.++
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~G-erv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDG-GWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecC-CeEEEEEEEECCCCCCCC
Confidence 456678888999999877666653 456689999999998763
No 119
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=92.82 E-value=1.1 Score=29.02 Aligned_cols=51 Identities=10% Similarity=0.118 Sum_probs=34.1
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeC-CCCCeEEEeec
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDD-PDGFMIEICNC 150 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~D-PdG~~iel~~~ 150 (153)
|++|+++.|.|+++..+...+ .|.++..... + .+ .++..+ ..|..|++++.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~-~~-~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-----D-RV-RLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-----C-EE-EEEecCCCCCCEEEEEeC
Confidence 578999999999999999976 4988754321 1 11 122222 24778887764
No 120
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=92.67 E-value=1.1 Score=25.99 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=36.1
Q ss_pred eEEEEeCCHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 96 HISFQCGNMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 96 hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
|+.+.+.|+++..+.+.+ .|++....... . . ....++.++ +..|+|....
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~-~--~~~~~~~~~-~~~i~l~~~~ 51 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--G-G--AEFAVLGLG-GTRLELFEGD 51 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--C-C--EEEEEEecC-CceEEEecCC
Confidence 789999999999999997 89987665431 0 1 224556655 7888887754
No 121
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=92.59 E-value=1.8 Score=27.88 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=25.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
.++.|+++.|+|++++.+...+ .|+++...
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEE
Confidence 5789999999999999999976 79987543
No 122
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=92.39 E-value=0.76 Score=27.95 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=36.0
Q ss_pred CceEEEEeCCHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 94 DNHISFQCGNMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+.|+++.|.|+++..+.+.+ .|.+.......... +. ....++. .+|..++|+++.
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~-~~-~~~~~~~-~~~~~l~l~~~~ 56 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPE-QG-VRVAFLG-LGNVQIELIEPL 56 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcc-cc-cEEEEEE-cCCEEEEEEEEC
Confidence 46999999999999999987 78887543322111 11 2234444 367788887653
No 123
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=92.14 E-value=1.6 Score=26.22 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=35.3
Q ss_pred CceEEEEeCCHHHHHHHHHHc-CCeEEeeccccCCCCCceeEEEEeCCC---CCeEEEeec
Q 047907 94 DNHISFQCGNMEAIEKRLKEL-DVKYIKRTVKDDQSGNAIDQMFFDDPD---GFMIEICNC 150 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~~~-G~~~~~~~~~~~~~g~~~~~~~~~DPd---G~~iel~~~ 150 (153)
+.|+++.|.|++++.+...+. |+++....... +.....+++..++ +..+++...
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFP---EGKFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecC---CCceEEEEecCCCCCCccEEEEEec
Confidence 469999999999999999765 99876543221 1122234455444 567877643
No 124
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=92.00 E-value=1.5 Score=26.02 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=34.0
Q ss_pred eEEEEeCCHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeCCCC--CeEEEeec
Q 047907 96 HISFQCGNMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDDPDG--FMIEICNC 150 (153)
Q Consensus 96 hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~DPdG--~~iel~~~ 150 (153)
|+++.|.|+++..+...+ .|+++...... . . ...++.+.++++ ..+++...
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~l~~~~~ 54 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPM-G--G-GFRWVTVAPPGSPETSLVLAPP 54 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeecc-C--C-CcEEEEEeCCCCCeeEEEEeCC
Confidence 799999999999999987 79988654321 1 1 122466666654 45665543
No 125
>PRK11478 putative lyase; Provisional
Probab=91.77 E-value=1.3 Score=27.04 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=24.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEe
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIK 120 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~ 120 (153)
.++.|+++.|.|++++.+...+ .|+++..
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEecc
Confidence 4578999999999999999965 6998754
No 126
>PLN02367 lactoylglutathione lyase
Probab=91.51 E-value=1.5 Score=30.55 Aligned_cols=54 Identities=13% Similarity=0.268 Sum_probs=38.1
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCCc-ceeeEEec-CeEEEEeeec
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFDF-AGAWLFSY-GVGVHLVQSN 77 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~~ 77 (153)
.+++|+++.|.|++++.+..++ .|.++......... ..+++.+. +..++|++..
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 5899999999999999999988 99998864432221 22344333 4567777644
No 127
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=91.19 E-value=1.3 Score=25.91 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=33.5
Q ss_pred CceEEEEeCCHHHHHHHHH-HcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 94 DNHISFQCGNMEAIEKRLK-ELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~-~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
++|+++.|.|++++.+... ..|.+....+... . . ..++..+++..++|...
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~-~--~~~~~~~~~~~i~l~~~ 52 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---F-P--GAWLYAGDGPQLHLIEE 52 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---C-C--ceEEEeCCCcEEEEEec
Confidence 4799999999999999996 6688765432211 1 1 24454455557777754
No 128
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=89.71 E-value=3.2 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=24.4
Q ss_pred CceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 94 DNHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
++|+.+.|.|+++..+..++ .|+++...
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~ 29 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAY 29 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEe
Confidence 47999999999999999988 89988654
No 129
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=89.67 E-value=1.9 Score=26.05 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=22.8
Q ss_pred CceEEEEeCCHHHHHHHHHHcCCeEE
Q 047907 94 DNHISFQCGNMEAIEKRLKELDVKYI 119 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~~~G~~~~ 119 (153)
+.|+++.|+|+++..+...+.|.++.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~ 26 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFP 26 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceec
Confidence 36899999999999999988898764
No 130
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=89.13 E-value=3.3 Score=25.03 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=24.7
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
.+.|+.+.|.|+++..+...+ .|+++...
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 31 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLER 31 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEc
Confidence 467999999999999999976 69988654
No 131
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=87.79 E-value=4.2 Score=24.36 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=36.1
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
+++|+++.|.|+++..+...+ .|.++......... +......++...+. .+++..
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~l~~ 56 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGE-GGDLRIAFLRIGEG-HIELFL 56 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEEST-TEEEEEEEEESTSS-CEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccc-cccccceeeccccc-ceeeee
Confidence 468999999999999999976 59988766542111 22333455555544 455544
No 132
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=87.55 E-value=4.9 Score=24.88 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=24.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
.++.|+++.|+|+++..+...+ .|......
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEe
Confidence 4689999999999999999966 69876543
No 133
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=87.44 E-value=4.8 Score=27.02 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=35.8
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCCC-cceeeEEec-CeEEEEeeec
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAFD-FAGAWLFSY-GVGVHLVQSN 77 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~-~~~~~l~~~~ 77 (153)
.++.|+++.|.|++++.+..++ .|+.+........ ....++.+. +..++|++..
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 4799999999999999999988 9998875432111 112233332 4556666643
No 134
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.91 E-value=2.6 Score=23.90 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
+-.+.+-|.+.|+.+....+.... ......||++|.+|..+.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~g-era~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDG-DDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecC-ceEEEEEEEEcCCCCccC
Confidence 345667788899999877666542 455679999999998773
No 135
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=86.81 E-value=0.27 Score=24.60 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCceeEeEEEEEeCChHHHHHHHhHhc
Q 047907 20 LPLMSLNHVSRLCRNVEDSIDFYTKVL 46 (153)
Q Consensus 20 ~~~~~i~hv~i~v~d~~~s~~FY~~~l 46 (153)
+.+..++-.+|++++.+++.+||+..|
T Consensus 7 ~gigp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 7 EGIGPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred CCcCccccCCCccccccchhHHHHHHH
Confidence 344556677888899999999999965
No 136
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.65 E-value=1.7 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHcCCeE
Q 047907 93 MDNHISFQCGNMEAIEKRLKELDVKY 118 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~~G~~~ 118 (153)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 34568899999999999999999876
No 137
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=86.14 E-value=6.3 Score=24.69 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=24.9
Q ss_pred CCceEEEEeCCHHHHHHHHH-HcCCeEEeec
Q 047907 93 MDNHISFQCGNMEAIEKRLK-ELDVKYIKRT 122 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~-~~G~~~~~~~ 122 (153)
++.|++++|.|+++..+... ..|.++....
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeee
Confidence 35799999999999999995 5799876543
No 138
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=85.72 E-value=5.1 Score=24.23 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=32.9
Q ss_pred CceEEEEeCCHHHHHHHHHH-cCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 94 DNHISFQCGNMEAIEKRLKE-LDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
+.|+++.|.|++++.+..++ .|+++..... ...++.. .++..+.+..++|.++
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~-~~~~~~~---~~~~~~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEE-VPEQGVK---VVFIALGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCcccee-CCCCCcE---EEEEecCCEEEEEEec
Confidence 67999999999999999974 6987753211 1111212 3333334566777653
No 139
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=85.56 E-value=6.4 Score=24.20 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
++.|+.+.|.|+++..+...+ .|+++...
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~ 30 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDR 30 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEee
Confidence 367999999999999999976 79987543
No 140
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=85.28 E-value=1.8 Score=25.92 Aligned_cols=28 Identities=7% Similarity=0.220 Sum_probs=24.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHcCCeEEe
Q 047907 93 MDNHISFQCGNMEAIEKRLKELDVKYIK 120 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~~G~~~~~ 120 (153)
++.|+++.|.|+++..+.....|+++..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 5689999999999999999888998754
No 141
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=84.16 E-value=7.8 Score=24.07 Aligned_cols=85 Identities=13% Similarity=0.201 Sum_probs=50.9
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCC----CCCccee------eEEecCeEEEEeeecCCCCCCCCCCCCCCCCC
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPP----AFDFAGA------WLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMD 94 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (153)
+.-+-+.|.+++++.+-..+ -||.+....- ..+.++. .+...+.++..+....... . -
T Consensus 42 FGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-----~------K 109 (142)
T COG4747 42 FGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-----Q------K 109 (142)
T ss_pred cceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-----c------e
Confidence 44566889999999999988 8998765320 0011111 0111223333222211110 0 0
Q ss_pred ceEEEEeCCHHHHHHHHHHcCCeEEee
Q 047907 95 NHISFQCGNMEAIEKRLKELDVKYIKR 121 (153)
Q Consensus 95 ~hl~f~v~di~~~~~~l~~~G~~~~~~ 121 (153)
.-+-++|+|+|++.+.|+++|+.++.+
T Consensus 110 Alli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 110 ALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 127889999999999999999998654
No 142
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.26 E-value=3.2 Score=22.60 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=21.1
Q ss_pred ceEEEEe--CCHHHHHHHHHHcCCeEEee
Q 047907 95 NHISFQC--GNMEAIEKRLKELDVKYIKR 121 (153)
Q Consensus 95 ~hl~f~v--~di~~~~~~l~~~G~~~~~~ 121 (153)
..+.|++ ++.+.+.+.|+++|+++..+
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 3366666 58889999999999998753
No 143
>PF10922 DUF2745: Protein of unknown function (DUF2745); InterPro: IPR020147 The T7-like bacteriophage gene 1.2 protein is an inhibitor of the Escherichia coli dGTP triphosphohydrolase (dGTPase) and is implicated in DNA replication.
Probab=83.14 E-value=5.1 Score=23.03 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
.++.++..||.+..+.++.+.............+.+.|-.||.+-
T Consensus 10 nafKaA~~Rl~~lD~~V~~e~~~~~~~~~~~~~Lrv~dr~G~~v~ 54 (85)
T PF10922_consen 10 NAFKAATDRLYELDFAVISEEFYYSNPAKMCMVLRVEDRSGNSVF 54 (85)
T ss_pred HHHHHHHHHHhhCcEEEEEEeeccccchhhEEEEEEEecCCCEee
Confidence 356778899999999888776555443454557899999999983
No 144
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=82.80 E-value=2.4 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=24.5
Q ss_pred CCceEEEEeCCHHHHHHHHHHcCCeEEe
Q 047907 93 MDNHISFQCGNMEAIEKRLKELDVKYIK 120 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~~G~~~~~ 120 (153)
++.|+.+.|+|+++..+...+.|+++..
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~lGl~~~~ 30 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTDFGLEVAA 30 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHHcCCEEEE
Confidence 5689999999999999999889987754
No 145
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=81.97 E-value=6.6 Score=24.35 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=25.8
Q ss_pred ceeEeEEEEEeCChHHHHHHHhHh--cCcEEee
Q 047907 22 LMSLNHVSRLCRNVEDSIDFYTKV--LGFVLIE 52 (153)
Q Consensus 22 ~~~i~hv~i~v~d~~~s~~FY~~~--lG~~~~~ 52 (153)
..++.|+++.|.|++...+++..+ .|+++..
T Consensus 60 ~~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~ 92 (134)
T cd08360 60 MAGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGW 92 (134)
T ss_pred CCcceEEEEEeCCHHHHHHHHHHHHHcCCcccc
Confidence 367999999999999999888876 6777653
No 146
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=80.59 E-value=3.5 Score=24.95 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
.++.|+.+.|.|+++..+...+ .|+++...
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 4678999999999999999976 79987543
No 147
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.30 E-value=8.2 Score=21.65 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCC
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGF 143 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~ 143 (153)
+..+...|.+.|+.+....+.....|.....|++.|++|.
T Consensus 14 fa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 14 LHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred HHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 4556788889999998766654344667789999999877
No 148
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.08 E-value=5.7 Score=21.96 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
+..+..-|...|+.+....+.....|.....|++.|++|..+
T Consensus 15 l~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~ 56 (73)
T cd04900 15 FARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPI 56 (73)
T ss_pred HHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCC
Confidence 345667788889999876655443366667899999998754
No 149
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=79.80 E-value=10 Score=22.42 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
.+.|+.+.|.|+++..+...+ .|+++...
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~ 31 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDR 31 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEee
Confidence 468999999999999999988 79987654
No 150
>PHA00450 host dGTPase inhibitor
Probab=78.48 E-value=10 Score=21.67 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++.++..||.+..+.++.+.............+.+.|-+|++|--.+
T Consensus 11 afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~t 57 (85)
T PHA00450 11 AFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASRT 57 (85)
T ss_pred HHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeeee
Confidence 45678899999999988776544433444457899999999987554
No 151
>PRK10291 glyoxalase I; Provisional
Probab=77.80 E-value=13 Score=22.67 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=35.0
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCCC--Cc-ceeeEEe-cCeEEEEeeec
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPAF--DF-AGAWLFS-YGVGVHLVQSN 77 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~~--~~-~~~~~~~-~~~~~~l~~~~ 77 (153)
..+.|+.+.|.|++++.+-.++ .|.++....... +. ...++.+ .+..++|++..
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 4688999999999999888877 898776432111 11 1233333 34567777754
No 152
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=76.43 E-value=3.8 Score=29.80 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=22.5
Q ss_pred CCCCceEEEEe------CCHHHHHHHHHHcCCeEE
Q 047907 91 DSMDNHISFQC------GNMEAIEKRLKELDVKYI 119 (153)
Q Consensus 91 ~~~~~hl~f~v------~di~~~~~~l~~~G~~~~ 119 (153)
+..++|+.+.| .||+++.+.|+++|+++.
T Consensus 182 G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 182 GYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp TCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 46789999999 999999999999999887
No 153
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=76.43 E-value=5.9 Score=23.65 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
.++.|+.+.|+|+++..+..++ .|++....
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~ 32 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRF 32 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecc
Confidence 3678999999999999999987 69987643
No 154
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=75.77 E-value=6.7 Score=25.13 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=23.7
Q ss_pred CCceEEEEeCCHHHHHHHHH-HcCCeEEee
Q 047907 93 MDNHISFQCGNMEAIEKRLK-ELDVKYIKR 121 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~-~~G~~~~~~ 121 (153)
++.|+++.|.|+++..+... ..|+++...
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~ 30 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDV 30 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEee
Confidence 36799999999999998885 469887543
No 155
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=75.71 E-value=19 Score=23.27 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=24.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEe
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIK 120 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~ 120 (153)
.++.|+++.|.|+++..+...+ .|+++..
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 3578999999999999999977 7998753
No 156
>PF14044 NETI: NETI protein
Probab=75.11 E-value=10 Score=20.10 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=20.5
Q ss_pred EEe---CCHHHHHHHHHHcCCeEEeeccc
Q 047907 99 FQC---GNMEAIEKRLKELDVKYIKRTVK 124 (153)
Q Consensus 99 f~v---~di~~~~~~l~~~G~~~~~~~~~ 124 (153)
|.| +.+++.++|+++.|..++.....
T Consensus 2 FeV~enETI~~CL~RM~~eGY~PvrR~Ek 30 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGYMPVRRIEK 30 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCCCceeeccc
Confidence 455 67999999999999988765443
No 157
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=74.79 E-value=16 Score=22.03 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=23.9
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEe
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIK 120 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~ 120 (153)
++.|+++.|.|+++..+...+ .|.++..
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~ 30 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGD 30 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceecc
Confidence 567999999999999999976 6998754
No 158
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=73.70 E-value=8 Score=24.47 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.0
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
.++.|+++.|.|+++..+..++ .|.++...
T Consensus 5 ~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 5 HRLDHCLLTGEDIAETTRFFTDVLDFYLAER 35 (143)
T ss_pred ceeCEEEEecCCHHHHHHHHHHhcCCEEEEE
Confidence 4678999999999999999966 79886543
No 159
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=73.13 E-value=18 Score=21.87 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEe
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIK 120 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~ 120 (153)
++.|+++.|.|+++..+...+ .|++...
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~ 32 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAK 32 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeee
Confidence 568999999999999999965 5987754
No 160
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=73.01 E-value=23 Score=23.04 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
.+++|+.+.|.|+++..+.+.+ .|+++...
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 4678999999999999999974 79987543
No 161
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=72.96 E-value=18 Score=21.75 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=25.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHHc-CCeEEee
Q 047907 92 SMDNHISFQCGNMEAIEKRLKEL-DVKYIKR 121 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~~-G~~~~~~ 121 (153)
.++.|+.+.|.|++++.+...+. |.++...
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEee
Confidence 46789999999999999999775 9887643
No 162
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=72.65 E-value=18 Score=21.69 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=23.0
Q ss_pred CceEEEEeCCHHHHHHHHHH----cCCeEEee
Q 047907 94 DNHISFQCGNMEAIEKRLKE----LDVKYIKR 121 (153)
Q Consensus 94 ~~hl~f~v~di~~~~~~l~~----~G~~~~~~ 121 (153)
+.|+.+.|.|++++.+..++ .|.+....
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~ 32 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVME 32 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEee
Confidence 36899999999999999887 48887543
No 163
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=72.24 E-value=20 Score=21.99 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=22.9
Q ss_pred ceEEEEeCCHHHHHHHHHH-cCCeEEee
Q 047907 95 NHISFQCGNMEAIEKRLKE-LDVKYIKR 121 (153)
Q Consensus 95 ~hl~f~v~di~~~~~~l~~-~G~~~~~~ 121 (153)
.|+++.|.|++++.+.+.+ .|++....
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDR 28 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999976 79987543
No 164
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=72.18 E-value=17 Score=21.12 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=28.3
Q ss_pred CCceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeC
Q 047907 20 LPLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 20 ~~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~ 54 (153)
-...+..|+.+.|.|+++..+...+ +|.++....
T Consensus 52 ~~~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~ 85 (108)
T PF12681_consen 52 GPPGGGFHLCFEVEDVDALYERLKE-LGAEIVTEP 85 (108)
T ss_dssp SSSSSEEEEEEEESHHHHHHHHHHH-TTSEEEEEE
T ss_pred cCCCceeEEEEEEcCHHHHHHHHHH-CCCeEeeCC
Confidence 3456788999999999999999999 899876643
No 165
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=72.14 E-value=7.4 Score=23.11 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=25.2
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEeec
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIKRT 122 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~~~ 122 (153)
++.|+++.|.|+++..+..++ .|.++....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~ 32 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDT 32 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeec
Confidence 467999999999999999987 788886543
No 166
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=71.73 E-value=22 Score=22.19 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEe
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIK 120 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~ 120 (153)
.++.|+++.|.|+++..+...+ .|.++..
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~ 32 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLV 32 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEe
Confidence 3578999999999999999965 6888753
No 167
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=71.59 E-value=3.9 Score=28.46 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=28.0
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 97 ISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 97 l~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.+|+-+|-+.+++.| .|+.+...+.. |... .|+.+|||||-.
T Consensus 182 ~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~-~~~~~~~~~~~~ 223 (228)
T PRK06704 182 TSIREERPELLTKLL--PTIDFTKLPSK----QPVL-LFNVKQPSSYSC 223 (228)
T ss_pred HHHHhcCHHHHHHHh--ccceeeecccc----cceE-EEEeeCCCccch
Confidence 345557777777755 67777654433 4443 899999999854
No 168
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=71.48 E-value=8.1 Score=23.20 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=24.7
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-cCCeEEe
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE-LDVKYIK 120 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~-~G~~~~~ 120 (153)
.++.|+.+.|.|+++..+...+ .|+++..
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~ 32 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETE 32 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEec
Confidence 4678999999999999999977 6988754
No 169
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=71.00 E-value=13 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=23.8
Q ss_pred CCceEEEEeCCHHHHHHHHHH-cCCeEEe
Q 047907 93 MDNHISFQCGNMEAIEKRLKE-LDVKYIK 120 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~-~G~~~~~ 120 (153)
++.|+.+.|.|++++.+...+ .|+++..
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~ 29 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHV 29 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEE
Confidence 568999999999999999975 6887754
No 170
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=70.23 E-value=28 Score=22.84 Aligned_cols=58 Identities=10% Similarity=0.030 Sum_probs=40.7
Q ss_pred CCCceEEEEeCCHHHHHHHHHHcCCeEEe--ecccc-----------CC----CCCceeEEEEeCCCCCeEEEee
Q 047907 92 SMDNHISFQCGNMEAIEKRLKELDVKYIK--RTVKD-----------DQ----SGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~~G~~~~~--~~~~~-----------~~----~g~~~~~~~~~DPdG~~iel~~ 149 (153)
.+...+++.+++.....+...+.|+++.- .+... .. +....++.|+.|++|.+..++.
T Consensus 63 ~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~ 137 (157)
T COG1225 63 LGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWR 137 (157)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEec
Confidence 46677899999999999999988887641 11000 00 1124468999999999998874
No 171
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.94 E-value=4.1 Score=28.15 Aligned_cols=22 Identities=14% Similarity=0.434 Sum_probs=18.9
Q ss_pred CChHHHHHHHhHhcCcEEeeeC
Q 047907 33 RNVEDSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 33 ~d~~~s~~FY~~~lG~~~~~~~ 54 (153)
.|+.+++.||.+.||+++....
T Consensus 145 a~~~e~a~wy~dyLGleie~~h 166 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGH 166 (246)
T ss_pred hccHHHHHHHHHhcCceeeecc
Confidence 4788899999999999987754
No 172
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.30 E-value=11 Score=21.67 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=22.0
Q ss_pred ceEEEEeCC----HHHHHHHHHHcCCeEEe
Q 047907 95 NHISFQCGN----MEAIEKRLKELDVKYIK 120 (153)
Q Consensus 95 ~hl~f~v~d----i~~~~~~l~~~G~~~~~ 120 (153)
..+.+++++ ++.+.+.|+++|+++..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 447788888 89999999999998864
No 173
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=68.78 E-value=27 Score=22.09 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=25.8
Q ss_pred eeEeEEEEEeCChHHHHHHHhHhcCcEEeee
Q 047907 23 MSLNHVSRLCRNVEDSIDFYTKVLGFVLIER 53 (153)
Q Consensus 23 ~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 53 (153)
.++.|+.+.|.|++++.+...+ .|.++...
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~ 114 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVRE 114 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccC
Confidence 4688999999999999999988 89877654
No 174
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=68.54 E-value=33 Score=23.13 Aligned_cols=76 Identities=12% Similarity=0.024 Sum_probs=41.1
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCC--CCCcceeeE------EecCeEEEEeeecCCCCCCCCCCCCCCC
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPP--AFDFAGAWL------FSYGVGVHLVQSNDEDKLSPPDSAHLDS 92 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 92 (153)
....++|+.++|++.+.+.+|-+..+..-..-... ++. +...+ ..++..+.+++-+.+.....+ ..
T Consensus 31 ~~~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGR-PI~l~~L~qPL~~~~~~I~~vELP~P~~K~Yp-----~e 104 (185)
T PF06185_consen 31 SQYEIDHIALRVNSNETAERWKQALLQCGELLSENMINGR-PICLFKLNQPLQFGGWSIDCVELPYPKDKRYP-----QE 104 (185)
T ss_dssp TT-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTE-EEEEEEEEEEEEETTEEEEEEEEE---SS--S-----S-
T ss_pred cccCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCe-eEEEEEcCCchhcCCeeEEEEEeCCCCCCCCC-----CC
Confidence 45678999999999999999999987554332211 110 12221 124556777777665543332 26
Q ss_pred CCceEEEEeC
Q 047907 93 MDNHISFQCG 102 (153)
Q Consensus 93 ~~~hl~f~v~ 102 (153)
|--|+-|.++
T Consensus 105 GWEHIE~Vip 114 (185)
T PF06185_consen 105 GWEHIEFVIP 114 (185)
T ss_dssp EEEEEEEE--
T ss_pred CceEEEEEec
Confidence 7789999883
No 175
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=68.10 E-value=15 Score=22.48 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.+++.+.+.|.+.|+++...... |...+.++|.-.+|.++
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvG----G~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVG----GNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-----SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCC----CCCCcEEEEEcCCCEEE
Confidence 78999999999999999876543 44445677766667654
No 176
>PRK06724 hypothetical protein; Provisional
Probab=65.42 E-value=11 Score=23.41 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=22.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHH----cCCeEE
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE----LDVKYI 119 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~----~G~~~~ 119 (153)
.++.|+++.|.|+++..+...+ .|.+..
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEe
Confidence 5789999999999998877765 466653
No 177
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=63.75 E-value=20 Score=19.19 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=19.3
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEE
Q 047907 97 ISFQCGNMEAIEKRLKELDVKYI 119 (153)
Q Consensus 97 l~f~v~di~~~~~~l~~~G~~~~ 119 (153)
+.+.++|.+.+.+.|+++|+++.
T Consensus 43 ~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 43 LRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEECCHHHHHHHHHHCCCEEE
Confidence 66677898899999999999863
No 178
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=62.99 E-value=31 Score=20.76 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.0
Q ss_pred ceEEEEeCCHHHHHHHHHHcCCeEE
Q 047907 95 NHISFQCGNMEAIEKRLKELDVKYI 119 (153)
Q Consensus 95 ~hl~f~v~di~~~~~~l~~~G~~~~ 119 (153)
+.+.+.|.|+++..+..++.|.+..
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~ 26 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFN 26 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEc
Confidence 4689999999999999988898875
No 179
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=62.09 E-value=23 Score=23.33 Aligned_cols=40 Identities=35% Similarity=0.555 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.+++.+.+.|++.|+++..+..- |...+.++|.--+|.++
T Consensus 112 rNv~~a~~~L~~~gI~i~a~dvG----G~~gR~i~f~~~tG~v~ 151 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAEDIG----GNKGRTMIFDTSDGKVY 151 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEECC----CCCCcEEEEECCCCEEE
Confidence 78999999999999999876443 33334576666666554
No 180
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=61.61 E-value=24 Score=23.18 Aligned_cols=40 Identities=25% Similarity=0.486 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.+++.+.+.|.+.|+++..+..- |...+.++|.--+|.++
T Consensus 105 rNi~~a~~~L~~~gI~i~a~dvG----G~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAEDTG----GNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCC----CCCCcEEEEECCCCEEE
Confidence 78999999999999999876443 43344677766666654
No 181
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=61.26 E-value=31 Score=20.23 Aligned_cols=28 Identities=4% Similarity=-0.040 Sum_probs=23.4
Q ss_pred ceEEEEeCCHHHHHHHHHHc-CCeEEeec
Q 047907 95 NHISFQCGNMEAIEKRLKEL-DVKYIKRT 122 (153)
Q Consensus 95 ~hl~f~v~di~~~~~~l~~~-G~~~~~~~ 122 (153)
.|+++.|.|+++..+...+. |.++....
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~~ 30 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDMG 30 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeecc
Confidence 58999999999999999864 99876443
No 182
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=61.23 E-value=24 Score=23.36 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=29.6
Q ss_pred EeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 100 QCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 100 ~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
--.+++.+.+.|.+.|+++..+..- |...+.++|.--+|.++
T Consensus 113 G~rNi~~a~~~L~~~gi~i~a~DvG----G~~gR~i~f~~~tG~v~ 154 (167)
T PRK13498 113 ADKNIHAALALAEQNGLHLKAQDLG----STGHRSIIFDLWNGNVW 154 (167)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeCC----CCCCcEEEEECCCCEEE
Confidence 3378999999999999999876443 33334576665666554
No 183
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=61.05 E-value=25 Score=23.20 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.+++.+.+.|++.|+++..+..- |...+.++|.--+|.++
T Consensus 114 rNv~~a~~~L~~~gI~i~a~DvG----G~~gR~i~f~~~tG~v~ 153 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKDFD----QSKSRKIFVFPENFKVI 153 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCC----CCCCcEEEEECCCCEEE
Confidence 78999999999999999876543 44444677766666554
No 184
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.08 E-value=30 Score=19.57 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCeEEeeccc--cCCCCCceeEEEEeCCCCCeE
Q 047907 105 EAIEKRLKELDVKYIKRTVK--DDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~--~~~~g~~~~~~~~~DPdG~~i 145 (153)
..+.+-+...|+.+....+. ... ......||+ |.+|..+
T Consensus 15 ~~i~~~l~~~~l~i~~AkI~~~T~G-erv~D~Fyv-~~~g~kl 55 (75)
T cd04896 15 YDILRTSKDCNIQISYGRFSSKVKG-YREVDLFIV-QSDGKKI 55 (75)
T ss_pred HHHHHHHHHCCeEEEEEEEecCccc-CEEEEEEEE-eCCCCcc
Confidence 45567778889998776666 442 344567888 8888764
No 185
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=58.51 E-value=30 Score=23.36 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.|++.+.+.|++.|+++...... |...+.++|..-+|..+
T Consensus 112 rNi~~a~~~L~~~gI~i~a~DvG----G~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGSSTG----GEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCC----CCCCcEEEEECCCCeEE
Confidence 78999999999999999876543 43444677766667664
No 186
>PHA02754 hypothetical protein; Provisional
Probab=57.56 E-value=28 Score=18.55 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
.++.+.|.++|+-+..-..-.. .|.. +.+...||..+|+.+..+
T Consensus 21 RelkD~LSe~GiYi~RIkai~~-SGdk---IVVi~aD~I~i~ls~Te~ 64 (67)
T PHA02754 21 RELKDILSEAGIYIDRIKAITT-SGDK---IVVITADAIKIELSETEK 64 (67)
T ss_pred HHHHHHHhhCceEEEEEEEEEe-cCCE---EEEEEcceEEEEEEeeee
Confidence 3455667788886644332222 1443 667778999999988654
No 187
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=57.51 E-value=15 Score=15.47 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=8.8
Q ss_pred EEEEeCCCCCeE
Q 047907 134 QMFFDDPDGFMI 145 (153)
Q Consensus 134 ~~~~~DPdG~~i 145 (153)
...+.|++|++|
T Consensus 8 ~~i~~D~~G~lW 19 (24)
T PF07494_consen 8 YSIYEDSDGNLW 19 (24)
T ss_dssp EEEEE-TTSCEE
T ss_pred EEEEEcCCcCEE
Confidence 466889999987
No 188
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.48 E-value=31 Score=19.05 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCC-CCe
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPD-GFM 144 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPd-G~~ 144 (153)
+..+...+.+.|+.+........ .+.....|++.||+ |..
T Consensus 14 l~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~~~~~ 54 (74)
T cd04925 14 LSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEETGAP 54 (74)
T ss_pred HHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCcCCCC
Confidence 45667888899999987655544 25556789999998 654
No 189
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=57.48 E-value=50 Score=21.42 Aligned_cols=72 Identities=11% Similarity=0.024 Sum_probs=42.8
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeeeCCC-CCcceeeEE------ecCeEEEEeeecCCCCCCCCCCCCCCCCCceE
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIERPPA-FDFAGAWLF------SYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHI 97 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~-~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl 97 (153)
++|+.+.|++.+.+.+|-+.++.+-..-.... -+-+...+. .++-.+..++-+.+.....+ ..|--|+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~k~Yp-----~eGWEHI 76 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKDKKYP-----QEGWEHI 76 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCC-----CCCceEE
Confidence 68999999999999999998765432221110 000122221 23455667766655433332 2577789
Q ss_pred EEEe
Q 047907 98 SFQC 101 (153)
Q Consensus 98 ~f~v 101 (153)
-|.+
T Consensus 77 E~Vl 80 (149)
T cd07268 77 EIVI 80 (149)
T ss_pred EEEe
Confidence 9988
No 190
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=57.11 E-value=18 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=18.6
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEE
Q 047907 97 ISFQCGNMEAIEKRLKELDVKYI 119 (153)
Q Consensus 97 l~f~v~di~~~~~~l~~~G~~~~ 119 (153)
+=|.+.|++.+.++|++.|....
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~ 28 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFI 28 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccc
Confidence 44667899999999999987654
No 191
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=56.69 E-value=8.7 Score=25.39 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=13.7
Q ss_pred EEEEeCCCCCeEEEeec
Q 047907 134 QMFFDDPDGFMIEICNC 150 (153)
Q Consensus 134 ~~~~~DPdG~~iel~~~ 150 (153)
.+|+.||+|.+..++..
T Consensus 157 ~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 157 FIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp EEEEE-TTSEEEEEECS
T ss_pred EEEEEcCCCcEEEEEcc
Confidence 69999999999988753
No 192
>PRK11700 hypothetical protein; Provisional
Probab=56.51 E-value=60 Score=21.98 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=45.6
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHhcCcEEeeeCCC-CCcceeeEE------ecCeEEEEeeecCCCCCCCCCCCCCCCC
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKVLGFVLIERPPA-FDFAGAWLF------SYGVGVHLVQSNDEDKLSPPDSAHLDSM 93 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~lG~~~~~~~~~-~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (153)
....++|+.++|++.+.+.+|-+..+.+-..-.... -+-+...+. .++-.+..++-+.+.....+. .|
T Consensus 36 ~~~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~-----eG 110 (187)
T PRK11700 36 SQLEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKRYPH-----EG 110 (187)
T ss_pred ccccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCC-----CC
Confidence 456689999999999999999988764432221110 000222221 234556777766554333322 56
Q ss_pred CceEEEEeC
Q 047907 94 DNHISFQCG 102 (153)
Q Consensus 94 ~~hl~f~v~ 102 (153)
--|+-|.++
T Consensus 111 WEHIElVlp 119 (187)
T PRK11700 111 WEHIELVLP 119 (187)
T ss_pred ceEEEEEec
Confidence 778999883
No 193
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=56.34 E-value=27 Score=27.34 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=26.6
Q ss_pred HHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 107 IEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 107 ~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
+...|.++|+++.--...... |+. ..-++|+||+..|
T Consensus 15 ~a~~La~~g~~vt~~ea~~~~-GGk--~~s~~~~dg~~~E 51 (485)
T COG3349 15 AAYELADAGYDVTLYEARDRL-GGK--VASWRDSDGNHVE 51 (485)
T ss_pred HHHHHHhCCCceEEEeccCcc-Cce--eeeeecCCCCeee
Confidence 457788999988654444333 555 4789999999988
No 194
>PRK03467 hypothetical protein; Provisional
Probab=56.31 E-value=52 Score=21.25 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
++.+.+.+.|.+.-+--+.-......|... .||+.|+++..+-+.+.+
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~--cFY~fd~~~~~l~~~S~~ 52 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCAN--CFYVFDAQKVAFYLLTEE 52 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEE--EEEEEcCCCeEEEEEcCC
Confidence 456777888887766444333333444544 689999999998887654
No 195
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=56.19 E-value=34 Score=22.43 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=28.8
Q ss_pred eCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 101 CGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 101 v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
-.+++.+.+.|++.|+++..+..- |...+.++|.--+|.++
T Consensus 106 ~rNi~~a~~~L~~~gi~i~a~dvG----G~~gR~i~f~~~tG~v~ 146 (157)
T PRK13488 106 ERNIESAKETLKKLGIRIVAEDVG----GDYGRTVKFDLKTGKVI 146 (157)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEcC----CCCCcEEEEECCCCEEE
Confidence 378999999999999999766443 33334566665556553
No 196
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.39 E-value=17 Score=19.69 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=20.1
Q ss_pred CCceEEEEe---CCHHHHHHHHHHcCCeE
Q 047907 93 MDNHISFQC---GNMEAIEKRLKELDVKY 118 (153)
Q Consensus 93 ~~~hl~f~v---~di~~~~~~l~~~G~~~ 118 (153)
+..++.+++ +.++++.+.|+++|+++
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 345577787 45788999999999875
No 197
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=54.91 E-value=33 Score=23.73 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.|++.+.+.|++.|+++...... |...+.++|.--+|.++
T Consensus 139 rNi~~a~~~L~~~gI~Iva~DvG----G~~gRki~f~~~tG~v~ 178 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQDLG----GAQPRKLLFDPQTGQAW 178 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCC----CCCCcEEEEECCCCEEE
Confidence 68999999999999999876443 33334566665556543
No 198
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=54.63 E-value=35 Score=19.55 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=16.3
Q ss_pred EEeCChHHHHHHHhHhcCcEEeee
Q 047907 30 RLCRNVEDSIDFYTKVLGFVLIER 53 (153)
Q Consensus 30 i~v~d~~~s~~FY~~~lG~~~~~~ 53 (153)
....+=..|.++|++ |||.....
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEEE
Confidence 344566789999999 99998754
No 199
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.56 E-value=36 Score=18.83 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCC
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGF 143 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~ 143 (153)
+..+...|...|+.+..-.+.....|.....|++.|++|-
T Consensus 15 Fa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~ 54 (68)
T cd04928 15 LSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG 54 (68)
T ss_pred HHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence 3455677778899998765544444666778888888873
No 200
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=53.61 E-value=37 Score=23.25 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=29.4
Q ss_pred eCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 101 CGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 101 v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
-.|++.+.+.|.+.|+++...... |...+.++|.--+|.++
T Consensus 126 ~rNi~~a~~~L~~~gI~iva~DvG----G~~gR~v~f~~~tG~v~ 166 (201)
T PRK13487 126 ERNAEFVRDYLQTERIPIVAEDLL----DIYPRKVYFFPTTGKVL 166 (201)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECC----CCCCcEEEEECCCCEEE
Confidence 378999999999999999876543 43344576666566554
No 201
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=53.49 E-value=38 Score=23.15 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.+++.+.+.|++.|+++...... |...+.++|.--+|.++
T Consensus 115 rNie~a~~~L~~~GI~ivaeDvG----G~~gRkI~f~~~tG~v~ 154 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHSLG----GNRARRIRFWPKTGRVQ 154 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCC----CCCCcEEEEECCCCEEE
Confidence 68999999999999999876443 33334577766667664
No 202
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=53.36 E-value=18 Score=22.47 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=20.8
Q ss_pred ceEEEEeCCHHHHHHHHHHcCCeEE
Q 047907 95 NHISFQCGNMEAIEKRLKELDVKYI 119 (153)
Q Consensus 95 ~hl~f~v~di~~~~~~l~~~G~~~~ 119 (153)
.|+-++-+|++.+.+.|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 4666777899999999999998763
No 203
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=52.70 E-value=26 Score=22.13 Aligned_cols=33 Identities=9% Similarity=0.150 Sum_probs=24.2
Q ss_pred CceeEeEEEEEeCChHHHHHHHhHh--cCcEEeee
Q 047907 21 PLMSLNHVSRLCRNVEDSIDFYTKV--LGFVLIER 53 (153)
Q Consensus 21 ~~~~i~hv~i~v~d~~~s~~FY~~~--lG~~~~~~ 53 (153)
...+++|+++.|.|.+...+++..+ .|.++...
T Consensus 53 ~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~ 87 (141)
T cd07258 53 SSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFG 87 (141)
T ss_pred CCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeC
Confidence 4568999999999887666666554 67776543
No 204
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=51.42 E-value=41 Score=18.52 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
..++.+.|++.|+..+... |+. ..++-|||.++-+-
T Consensus 9 ~ke~ik~Le~~Gf~~vrqk------GSH---~q~kHp~~~~vtVP 44 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQK------GSH---RQYKHPDGGRVTVP 44 (66)
T ss_pred HHHHHHHHHhCCcEEEEee------cce---eEEEcCCCCEEEec
Confidence 4567889999999886542 553 77888888877653
No 205
>PLN02504 nitrilase
Probab=51.01 E-value=92 Score=23.20 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
++.+.+.+++.|+.++-...... .+..+.+.++.+|+|.++..+
T Consensus 107 i~~l~~~A~~~~i~iv~G~~e~~-~~~~yNsa~~i~~~G~i~~~y 150 (346)
T PLN02504 107 VDRLAAMAGKYKVYLVMGVIERD-GYTLYCTVLFFDPQGQYLGKH 150 (346)
T ss_pred HHHHHHHHHHcCCEEEEeeeecC-CCceEEEEEEECCCCCEEeEE
Confidence 56777777788887765533222 244566888999999887654
No 206
>PRK11191 RNase E inhibitor protein; Provisional
Probab=49.82 E-value=43 Score=21.46 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=20.6
Q ss_pred CceEEEEe-CCHHHHHHHHHHcCCeEEe
Q 047907 94 DNHISFQC-GNMEAIEKRLKELDVKYIK 120 (153)
Q Consensus 94 ~~hl~f~v-~di~~~~~~l~~~G~~~~~ 120 (153)
-||++|.- ++++.+...+.+.|..+..
T Consensus 35 EH~~~f~d~~~lek~a~~a~klGyeV~~ 62 (138)
T PRK11191 35 EHHFSADDFDKLEKAAVEAFKLGYEVTD 62 (138)
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCeeec
Confidence 36777766 5677788888999999854
No 207
>PRK14707 hypothetical protein; Provisional
Probab=49.58 E-value=35 Score=31.95 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCCCC---CceeEEEEeCCCCCeEEEe
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQSG---NAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~~g---~~~~~~~~~DPdG~~iel~ 148 (153)
.+..+...|.++|.+.+.-.-.....+ .++ .+.++||+|++|||-
T Consensus 2357 ~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGI-NvtL~~pdG~~FEIQ 2404 (2710)
T PRK14707 2357 GLRAVLAALDDQGHARVKLTNQFTEYSPSFKAI-NLTLRSPEGALWEIQ 2404 (2710)
T ss_pred HHHHHHHHHHHcCCeEEEEeecccCCCCCccce-EEEEEcCCCcEEEEE
Confidence 456777889999998875432211101 122 467899999999984
No 208
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.25 E-value=63 Score=27.21 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=42.6
Q ss_pred CCceEEEEeCC----HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 93 MDNHISFQCGN----MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 93 ~~~hl~f~v~d----i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
+..-+.+...| +..++..+.++|..+....+-....|.....+.+.||+|..++
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~ 740 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE 740 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc
Confidence 34446777777 7788899999999888776655555777889999999998887
No 209
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=46.89 E-value=26 Score=20.66 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=22.3
Q ss_pred HHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 107 IEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 107 ~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
+.+.+.++|+....-+.....+.. .-.|.|++|..|+.+
T Consensus 20 L~~~a~qaG~~~~~~~i~~l~~~~---~g~~~d~~~~~I~~l 58 (97)
T PF03738_consen 20 LMDTARQAGLDTRFIPIEDLGWDE---DGRFYDGDGRPIDVL 58 (97)
T ss_dssp HHHHHHHTT-EEEEETTTTEEE-T---TS-EEETTS-B--EE
T ss_pred HHHHHHHCCCCeEEechHheEECC---CCcEECCCCCChhee
Confidence 557778889988766665543331 134789999888765
No 210
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=46.61 E-value=55 Score=23.03 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.|++.+.+.|.+.|+++..+... |...+.++|.--+|.++
T Consensus 125 RNieaa~~~L~~~gI~IvaeDvG----G~~gRkV~f~~~TG~v~ 164 (233)
T PRK13489 125 RNADFVRRYLALERIRITAEDLQ----GVHPRKVAFMPRTGRAM 164 (233)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCC----CCCCcEEEEECCCCEEE
Confidence 78999999999999999876543 33334566655556543
No 211
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=46.29 E-value=41 Score=17.16 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=15.0
Q ss_pred CCceeEEEEeCCCCCeEEEe
Q 047907 129 GNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 129 g~~~~~~~~~DPdG~~iel~ 148 (153)
+....+..+.||||....|.
T Consensus 25 ~~v~GsY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 25 GVVRGSYSYIDPDGQTRTVT 44 (52)
T ss_pred CEEEEEEEEECCCCCEEEEE
Confidence 43445788999999988764
No 212
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=46.08 E-value=83 Score=20.93 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=27.1
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEE
Q 047907 97 ISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEI 147 (153)
Q Consensus 97 l~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel 147 (153)
+.|..++-+++.+.|.+.|+.+..... ..++.+++|..+.+
T Consensus 47 i~~~~~~~~~l~~~L~~~G~~ite~~~----------~~~l~~~~g~llDl 87 (174)
T PF10706_consen 47 IFVPREDQAELRALLKELGYRITETTD----------YGFLADDDGRLLDL 87 (174)
T ss_dssp EEEEGGGHHHHHHHHHHTT-EEEEEET----------EEEEEETTTEEEEE
T ss_pred EEEEcchhHHHHHHHHHCCCEEEEecc----------ccEEEcCCCCEEEe
Confidence 556668999999999999997754210 13366666665554
No 213
>PTZ00330 acetyltransferase; Provisional
Probab=45.95 E-value=32 Score=21.33 Aligned_cols=26 Identities=46% Similarity=0.690 Sum_probs=18.4
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEeee
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLIER 53 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 53 (153)
+..+.+.++ +.+.+||++ +||.....
T Consensus 116 ~~~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 116 CYKVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred CCEEEEecC--hHHHHHHHH-CCCEEece
Confidence 344555553 579999988 99997653
No 214
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=45.56 E-value=1.1e+02 Score=21.78 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
++.+.+..++.++.++-+..+....+..+.+.++.+|+|.++..+
T Consensus 79 ~~~l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y 123 (287)
T cd07568 79 TKRFAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKY 123 (287)
T ss_pred HHHHHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEE
Confidence 455666777778877654322211244567889999999876554
No 215
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.39 E-value=23 Score=18.98 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHcCCeE
Q 047907 102 GNMEAIEKRLKELDVKY 118 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~ 118 (153)
++.+.+.+.|+++|+++
T Consensus 53 ~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 53 EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHHcCCcC
Confidence 56789999999999863
No 216
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=44.85 E-value=28 Score=18.98 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=17.2
Q ss_pred eEeEEEEEeC-ChHHHHHHHhHhcCcE
Q 047907 24 SLNHVSRLCR-NVEDSIDFYTKVLGFV 49 (153)
Q Consensus 24 ~i~hv~i~v~-d~~~s~~FY~~~lG~~ 49 (153)
++..+.+.+. +=..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 4566666664 44558999998 8885
No 217
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=43.84 E-value=21 Score=19.63 Aligned_cols=14 Identities=50% Similarity=0.847 Sum_probs=12.2
Q ss_pred HHHHHHHhHhcCcEE
Q 047907 36 EDSIDFYTKVLGFVL 50 (153)
Q Consensus 36 ~~s~~FY~~~lG~~~ 50 (153)
+.+.+||++ +||++
T Consensus 66 ~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 66 PAAIKFYEK-LGFEE 79 (79)
T ss_dssp HHHHHHHHH-TTEEE
T ss_pred HHHHHHHHH-CcCCC
Confidence 689999999 99974
No 218
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.68 E-value=56 Score=17.88 Aligned_cols=47 Identities=9% Similarity=0.321 Sum_probs=31.7
Q ss_pred EEEEeCC----HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCe
Q 047907 97 ISFQCGN----MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFM 144 (153)
Q Consensus 97 l~f~v~d----i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ 144 (153)
+.+.++| +..+...+.+.|+.+......+. .+.....|++.|++|..
T Consensus 4 i~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~~ 54 (72)
T cd04926 4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGNP 54 (72)
T ss_pred EEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCCc
Confidence 4455544 45666788899999976544333 24455689999999874
No 219
>PRK09732 hypothetical protein; Provisional
Probab=43.23 E-value=86 Score=19.94 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
++..+++++.|+.+ .+-+.|..||++-+...+
T Consensus 17 ~aA~~~A~~~g~~v---------------~iaVvD~~G~l~a~~RmD 48 (134)
T PRK09732 17 AAGQEEAQKNNWSV---------------SIAVADDGGHLLALSRMD 48 (134)
T ss_pred HHHHHHHHHhCCCE---------------EEEEEcCCCCEEEEEEcC
Confidence 44555666666644 477888888888776654
No 220
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=42.74 E-value=21 Score=16.45 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=13.5
Q ss_pred EeCChHHHHHHHhHhcCc
Q 047907 31 LCRNVEDSIDFYTKVLGF 48 (153)
Q Consensus 31 ~v~d~~~s~~FY~~~lG~ 48 (153)
...|.++++++|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 346899999999997744
No 221
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=41.83 E-value=1.1e+02 Score=21.08 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=31.8
Q ss_pred CCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCC
Q 047907 92 SMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPD 141 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPd 141 (153)
.++.+|.+.-+|+..+.+.+...|+.+.-...... +.+.+.++|.-.|
T Consensus 32 ~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~--~~~~~~V~FkA~D 79 (204)
T PF12687_consen 32 KGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKST--GPGKYDVFFKAKD 79 (204)
T ss_pred CCceEEecCHhhHHHHHHHHHHcCCceEEeeccCC--CCCcEEEEEEcCc
Confidence 45667777778999999999999998854432222 2223467776554
No 222
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.69 E-value=54 Score=17.17 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=17.6
Q ss_pred ceEEEEeCC---HHHHHHHHHHcCCeEE
Q 047907 95 NHISFQCGN---MEAIEKRLKELDVKYI 119 (153)
Q Consensus 95 ~hl~f~v~d---i~~~~~~l~~~G~~~~ 119 (153)
.++.+.+.+ ++.+.+.|++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 335555544 4588999999998764
No 223
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=41.64 E-value=92 Score=20.25 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++.+.+.+++.++.++........ +..+...++.+|+|.++..+.
T Consensus 73 ~~~l~~~a~~~~~~i~~G~~~~~~-~~~~N~~~~~~~~g~~~~~y~ 117 (186)
T PF00795_consen 73 LERLAELAKENGITIVAGIPERDD-GGLYNSAVVIDPDGEILGRYR 117 (186)
T ss_dssp HHHHHHHHHHHTSEEEEEEEEEET-TEEEEEEEEEETTSEEEEEEE
T ss_pred HHHHHHHHHhcCCccccccccccc-ccccceeEEEEeeeccccccc
Confidence 455556667778877665333322 456678999999999986554
No 224
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=41.23 E-value=55 Score=20.37 Aligned_cols=48 Identities=6% Similarity=-0.071 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
.++...+.+|.++|---+...... +..+.-.+...|++|.+++-...+
T Consensus 25 k~Fn~~~~~L~~~G~V~iGr~~gr--f~~g~IvllaiD~~~~I~d~~~M~ 72 (118)
T PRK10234 25 SRFNRAFDTLCQQGRVGVGRSSGR--FKPRVVVALALDEQQRVVDTLFMK 72 (118)
T ss_pred HHHHHHHHHHHhcCceEEecccCc--cCCCeEEEEEECCCCcEEeeEEEc
Confidence 566778899999986333322222 233333578999999999877654
No 225
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.16 E-value=76 Score=18.74 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++.|.+++-|.+.|+++... |.+ +.-.-|.+-+||+.-
T Consensus 12 ~~~dri~~~l~e~g~~v~~e-------GD~---ivas~pgis~ieik~ 49 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEE-------GDR---IVASSPGISRIEIKP 49 (96)
T ss_pred CCHHHHHHHHHHhCeeEeec-------ccE---EEEecCCceEEEEec
Confidence 78899999999999998654 332 445557777777653
No 226
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=41.03 E-value=92 Score=19.66 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=33.0
Q ss_pred CCceEEEEeCCHHHHHHHHHHcCCeE--Eeecccc--CCCCC-------------ceeEEEEeCCCCCeEEEee
Q 047907 93 MDNHISFQCGNMEAIEKRLKELDVKY--IKRTVKD--DQSGN-------------AIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~~G~~~--~~~~~~~--~~~g~-------------~~~~~~~~DPdG~~iel~~ 149 (153)
++.-+++.+++.+++.+.+++.|+++ +..+... ..+|. .....++.||+|.++..+.
T Consensus 64 ~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 64 GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 45556777777777777777776544 2211100 00110 0135789999999988865
No 227
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=40.44 E-value=24 Score=20.65 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=20.9
Q ss_pred CCCceEEEEeC---CHHHHHHHHHHcCCeEEee
Q 047907 92 SMDNHISFQCG---NMEAIEKRLKELDVKYIKR 121 (153)
Q Consensus 92 ~~~~hl~f~v~---di~~~~~~l~~~G~~~~~~ 121 (153)
.+...++|.++ +++++.++|.+.|+.+...
T Consensus 49 ~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dl 81 (91)
T PF00585_consen 49 FARVLVGIEVPDAEDLEELIERLKALGYPYEDL 81 (91)
T ss_dssp CSEEEEEEE-SSTHHHHHHHHHHTSSS-EEECT
T ss_pred eeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEEC
Confidence 34456888884 3677999999999988653
No 228
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=40.17 E-value=11 Score=19.34 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=13.7
Q ss_pred EEEeC---ChHHHHHHHhHhc
Q 047907 29 SRLCR---NVEDSIDFYTKVL 46 (153)
Q Consensus 29 ~i~v~---d~~~s~~FY~~~l 46 (153)
++++. +.++..+||+..|
T Consensus 16 giPi~~rs~v~~~~dWYk~Mf 36 (50)
T smart00459 16 GIPQAPRSSVERPKDWYRTMF 36 (50)
T ss_pred CCccccccCcccHHHHHHHHH
Confidence 44444 7899999999975
No 229
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=37.84 E-value=99 Score=20.44 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=28.4
Q ss_pred eCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 101 CGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 101 v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
-.+++.+.+.|++.|++++.+... |..-+.++|---+|.++
T Consensus 113 ~rNv~~~~~~L~~~~IpilaeD~G----g~~gR~i~F~p~tG~v~ 153 (164)
T COG1871 113 ERNVEFAKEFLKDEGIPILAEDTG----GDSGRTIEFNPSTGRVR 153 (164)
T ss_pred hHHHHHHHHHHHHcCCcEEEhhhC----CCCCcEEEEecCCCcEE
Confidence 378999999999999999876543 33333566655556543
No 230
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=37.77 E-value=56 Score=20.93 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=21.0
Q ss_pred eEEEEEeC-ChHHHHHHHhHhcCcEEeeeC
Q 047907 26 NHVSRLCR-NVEDSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 26 ~hv~i~v~-d~~~s~~FY~~~lG~~~~~~~ 54 (153)
..+.+.|. +=..+..||++ +||......
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~ 155 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIR 155 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeee
Confidence 45666664 44599999999 999987764
No 231
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=37.61 E-value=81 Score=18.00 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=32.5
Q ss_pred CCCceEEEEeCC--HHHHHHHHHHcCCeEEe--ecccc--CCCC-CceeEEEEeCCCCCeEEEe
Q 047907 92 SMDNHISFQCGN--MEAIEKRLKELDVKYIK--RTVKD--DQSG-NAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 92 ~~~~hl~f~v~d--i~~~~~~l~~~G~~~~~--~~~~~--~~~g-~~~~~~~~~DPdG~~iel~ 148 (153)
.++..+++.++. .+.+.+.+.+.+..+.. ..... ..++ ...-.+++.||+|.++..+
T Consensus 51 ~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 51 DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114 (116)
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEe
Confidence 345567777755 77777777776543321 11000 0112 1334689999999887654
No 232
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=37.55 E-value=98 Score=20.71 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
+..+++.+...+.-.--.. .++..-.|.+ .|.+++|||....|.+.+
T Consensus 78 pk~del~akF~~EH~H~d~-EvRy~vaG~G--iF~v~~~d~~~~~i~c~~ 124 (181)
T COG1791 78 PKLDELRAKFLQEHLHTDD-EVRYFVAGEG--IFDVHSPDGKVYQIRCEK 124 (181)
T ss_pred ccHHHHHHHHHHHhccCCc-eEEEEEecce--EEEEECCCCcEEEEEEcc
Confidence 4566666555444221111 1222222666 599999999999988764
No 233
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=37.40 E-value=1.4e+02 Score=20.67 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
++.+.+.+++.++.++-........+..+.+.++.+|+|.++..+
T Consensus 63 ~~~l~~~a~~~~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y 107 (253)
T cd07583 63 VSFLSELAKKHGVNIVAGSVAEKEGGKLYNTAYVIDPDGELIATY 107 (253)
T ss_pred HHHHHHHHHHcCcEEEeceEEecCCCcEEEEEEEECCCCcEEEEE
Confidence 455555566778777644222212245566888999999877654
No 234
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=36.55 E-value=78 Score=23.23 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=43.7
Q ss_pred EEEEeCChHHHHHHHhHhcCcEEeeeCCCCCcceeeEEecCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEeCCHHHH
Q 047907 28 VSRLCRNVEDSIDFYTKVLGFVLIERPPAFDFAGAWLFSYGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQCGNMEAI 107 (153)
Q Consensus 28 v~i~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v~di~~~ 107 (153)
+++.+-|.-++..|+.++++..+..... .-...+..++.++..-...... +.|.-+.++.+
T Consensus 171 fGVTtLDvVRA~tFv~~~~~~~p~~~v~------VPVIGGHaG~TIlPLlSQ~~p~-------------~~~~~~~~~~L 231 (345)
T KOG1494|consen 171 FGVTTLDVVRANTFVAEVLNLDPAEDVD------VPVIGGHAGITIIPLLSQCKPP-------------FRFTDDEIEAL 231 (345)
T ss_pred eceehhhhhhHHHHHHHHhCCCchhcCC------cceecCcCCceEeeecccCCCc-------------ccCCHHHHHHH
Confidence 4566779999999999999998632211 1112222334443332211100 33333567888
Q ss_pred HHHHHHcCCeEEee
Q 047907 108 EKRLKELDVKYIKR 121 (153)
Q Consensus 108 ~~~l~~~G~~~~~~ 121 (153)
..|++..|-+++..
T Consensus 232 t~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 232 THRIQNGGTEVVKA 245 (345)
T ss_pred HHHHHhCCceEEEe
Confidence 88888888887643
No 235
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=36.52 E-value=1.5e+02 Score=20.68 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCeEEeeccccCC--CCCceeEEEEeCCCCCeEEEe
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQ--SGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~--~g~~~~~~~~~DPdG~~iel~ 148 (153)
++.+.+.+++.++.+.-....... .+..+.+.++.+|+|.++..+
T Consensus 64 ~~~l~~~a~~~~i~i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y 110 (265)
T cd07572 64 LQALSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFDPDGELVARY 110 (265)
T ss_pred HHHHHHHHHHCCeEEEEeeeccccCCCCcEEEEEEEECCCCeEEeEE
Confidence 455666667778766543221111 144556888999999876544
No 236
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=36.35 E-value=88 Score=23.37 Aligned_cols=85 Identities=8% Similarity=-0.104 Sum_probs=43.1
Q ss_pred hHHHHHHHhHhcCcEEeeeCCCCCcceeeEEe-cCeEEEEeeecCCCCCCCCCCCCCCCCCceEEEEe-CCHHHHHHHHH
Q 047907 35 VEDSIDFYTKVLGFVLIERPPAFDFAGAWLFS-YGVGVHLVQSNDEDKLSPPDSAHLDSMDNHISFQC-GNMEAIEKRLK 112 (153)
Q Consensus 35 ~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~hl~f~v-~di~~~~~~l~ 112 (153)
.++.++|-.+-||++....-. ...-.. ......++..+.....+.....+.-+.+.--+|.- .+..+..+.|+
T Consensus 55 ~~~iR~FA~~~L~Lpdn~sY~-----~YadL~Rp~vvWnV~Aap~~sl~~~~WcFPi~Gcv~YrGyF~~~~A~~~a~~L~ 129 (337)
T PF10023_consen 55 AQQIRRFASEELGLPDNGSYR-----SYADLDRPYVVWNVFAAPEFSLEPKTWCFPIVGCVPYRGYFDEADARAEAAELR 129 (337)
T ss_pred HHHHHHHHHHhcCCCCCCChh-----hhhhcCCCcEEEEEEecCcccCCcceeeccccccccccCcCCHHHHHHHHHHHH
Confidence 577889999999997654321 111000 11122222222222222221222223322233333 67888889999
Q ss_pred HcCCeEEeeccc
Q 047907 113 ELDVKYIKRTVK 124 (153)
Q Consensus 113 ~~G~~~~~~~~~ 124 (153)
+.|..+...++.
T Consensus 130 ~~GlDv~v~gV~ 141 (337)
T PF10023_consen 130 AQGLDVYVGGVP 141 (337)
T ss_pred HcCCceeEeccc
Confidence 999988655443
No 237
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=36.05 E-value=1.5e+02 Score=20.55 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++.+.+.+++.++.++-........+..+.+.++.+|+|.++..+.
T Consensus 63 ~~~l~~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~ 108 (255)
T cd07581 63 VSALARLARELGITVVAGMFEPAGDGRVYNTLVVVGPDGEIIAVYR 108 (255)
T ss_pred HHHHHHHHHHcCeEEEEEeeeeCCCCcEEEeEEEECCCCcEEEEEe
Confidence 4555566667787666543222222345678889999998776553
No 238
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=35.83 E-value=1.6e+02 Score=21.05 Aligned_cols=46 Identities=28% Similarity=0.388 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCC--CCCceeEEEEeCCCCCeEEEe
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQ--SGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~--~g~~~~~~~~~DPdG~~iel~ 148 (153)
.++.+.+.+++.++.++........ .+..+.+.++.+|+|.++..+
T Consensus 78 ~~~~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~y 125 (294)
T cd07582 78 ETEALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRY 125 (294)
T ss_pred HHHHHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEE
Confidence 3566667777788877654432221 133456889999999877654
No 239
>PRK10325 heat shock protein GrpE; Provisional
Probab=35.58 E-value=1.2e+02 Score=20.68 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCC---CCeEEEeec
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPD---GFMIEICNC 150 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPd---G~~iel~~~ 150 (153)
..+..-|.+.|++.+............-....+.+|+ |.++++++.
T Consensus 128 ~~l~~~L~~~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qk 176 (197)
T PRK10325 128 KSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQK 176 (197)
T ss_pred HHHHHHHHHCcCeeeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeC
Confidence 3455777889999876554443212221123444544 899998875
No 240
>PRK14707 hypothetical protein; Provisional
Probab=35.56 E-value=72 Score=30.16 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCcee--EEEEeCCCCCeEEEe
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAID--QMFFDDPDGFMIEIC 148 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~--~~~~~DPdG~~iel~ 148 (153)
+.++.+.+.|.++|++++.-...-...+..|. ...+++++|+.|||.
T Consensus 2587 ~~v~~~~~~L~~~G~~~~rvKNtw~~~d~tY~GvN~~~r~~~g~~FEIQ 2635 (2710)
T PRK14707 2587 AKVQAAQDALRRQGMTCVNLQNYFTSGDGTYRGINASFTDAEGYAFEVQ 2635 (2710)
T ss_pred HHHHHHHHHHHhcCCeEEEeeccccCCCCcccceeeeEEcCCCCeEEEE
Confidence 45788889999999988754321110011111 367899999999985
No 241
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=35.52 E-value=97 Score=18.42 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=34.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHHcCC--eEEeeccccC--CCC-------CceeEEEEeCCCCCeE
Q 047907 92 SMDNHISFQCGNMEAIEKRLKELDV--KYIKRTVKDD--QSG-------NAIDQMFFDDPDGFMI 145 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~~G~--~~~~~~~~~~--~~g-------~~~~~~~~~DPdG~~i 145 (153)
.++.-+++..++.++..+.+++.+. ++...+.... .++ ......|+.||+|.+.
T Consensus 58 ~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 58 KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 3556688888998888888877754 4444321110 011 1345799999999875
No 242
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=34.65 E-value=65 Score=20.31 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=20.8
Q ss_pred EeEEEEEeCChHHHHHHHhHhcCcEEe
Q 047907 25 LNHVSRLCRNVEDSIDFYTKVLGFVLI 51 (153)
Q Consensus 25 i~hv~i~v~d~~~s~~FY~~~lG~~~~ 51 (153)
-+|+.+...|..+..+-..++||+++.
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 479999999999999999999999875
No 243
>PRK10314 putative acyltransferase; Provisional
Probab=34.64 E-value=44 Score=21.46 Aligned_cols=17 Identities=24% Similarity=0.653 Sum_probs=14.0
Q ss_pred HHHHHHHhHhcCcEEeee
Q 047907 36 EDSIDFYTKVLGFVLIER 53 (153)
Q Consensus 36 ~~s~~FY~~~lG~~~~~~ 53 (153)
..+..||++ +||....+
T Consensus 118 ~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 118 AHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred HHHHHHHHH-CCCEECCC
Confidence 567899999 99998764
No 244
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=34.39 E-value=48 Score=19.61 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=17.0
Q ss_pred ceEEEEe-CCHHHHHHHHHHcCCeEEee
Q 047907 95 NHISFQC-GNMEAIEKRLKELDVKYIKR 121 (153)
Q Consensus 95 ~hl~f~v-~di~~~~~~l~~~G~~~~~~ 121 (153)
+++.|.. ++.+++...+.+.|.++...
T Consensus 28 h~~~f~~~~~~~~f~~~~~~~g~~v~~~ 55 (104)
T PF06877_consen 28 HWFYFEDEEDAEKFAEELEKLGYEVESA 55 (104)
T ss_dssp EEEEES-HHHHHHHHHHHHHHS---B--
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 5566665 67899999999999987553
No 245
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=34.24 E-value=1.2e+02 Score=20.12 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHcCCeEEeecccc---------------CCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKD---------------DQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~---------------~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
.+.+++.+.+.+.|++++...... ...|.......|..|...+|||..+.
T Consensus 119 ~Ne~el~~~l~~~~~~~v~~~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~ 183 (206)
T PF04577_consen 119 LNEDELLEILKKYGFEVVDPEDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPN 183 (206)
T ss_pred cCHHHHHHHHhhCCeEEEeCCCCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCC
Confidence 466777777777787766432110 13366566788889999999996543
No 246
>CHL00193 ycf35 Ycf35; Provisional
Probab=33.94 E-value=1.2e+02 Score=19.08 Aligned_cols=52 Identities=13% Similarity=0.290 Sum_probs=32.8
Q ss_pred EEeCCHHHHHHHHHHcCCeEEeeccc-cCCCCCce-eEEEEeCCCCCeEEEeec
Q 047907 99 FQCGNMEAIEKRLKELDVKYIKRTVK-DDQSGNAI-DQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 99 f~v~di~~~~~~l~~~G~~~~~~~~~-~~~~g~~~-~~~~~~DPdG~~iel~~~ 150 (153)
=.+.|.+.+.+.|.+.|+.+...+.. ....|... -.+.+.-+.|+-|.+..+
T Consensus 9 T~i~d~~~L~~AL~dLg~~~~~~~~~vrgy~gq~~~a~lvi~~~~~~diGf~~n 62 (128)
T CHL00193 9 TSIQNLNLLKKALNDLNIEWKKENQVIKGYNGQTHNADLVIKQSNNYDIGFVWN 62 (128)
T ss_pred eEEcCHHHHHHHHHHcCCCceeCCceeeccCCCeEEEEEEEEcCCCCceeEeeC
Confidence 34589999999999999998663221 11223322 135566667777666654
No 247
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=33.94 E-value=44 Score=20.55 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=18.3
Q ss_pred eEeEEEEEeC-ChHHHHHHHhHhcCcEEe
Q 047907 24 SLNHVSRLCR-NVEDSIDFYTKVLGFVLI 51 (153)
Q Consensus 24 ~i~hv~i~v~-d~~~s~~FY~~~lG~~~~ 51 (153)
++..+.+.+. +-..+.+||++ +||...
T Consensus 109 ~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~ 136 (144)
T PRK10146 109 GAEMTELSTNVKRHDAHRFYLR-EGYEQS 136 (144)
T ss_pred CCcEEEEecCCCchHHHHHHHH-cCCchh
Confidence 4445555553 33479999999 999754
No 248
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.87 E-value=78 Score=16.73 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCe
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFM 144 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ 144 (153)
+.++...+.+.|+.+......... +.....|++.+++|..
T Consensus 14 l~~i~~~l~~~~~~I~~~~~~~~~-~~~~~~f~i~~~~~~~ 53 (70)
T cd04899 14 LADVTRVLAELGLNIHSAKIATLG-ERAEDVFYVTDADGQP 53 (70)
T ss_pred HHHHHHHHHHCCCeEEEEEEEecC-CEEEEEEEEECCCCCc
Confidence 456778888999999776554432 3445678899999875
No 249
>PRK03381 PII uridylyl-transferase; Provisional
Probab=33.17 E-value=1e+02 Score=25.89 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=37.5
Q ss_pred CceEEEEeCCH----HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 94 DNHISFQCGNM----EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 94 ~~hl~f~v~di----~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
..-+.+.+.|- ..+...|.+.|+.+..-.+.+. .+.....||+.|++|..++
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-g~~a~D~F~V~d~~g~~~~ 762 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-GADVVDVFYVTGAAGGPLA 762 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-CCeEEEEEEEECCCCCcCc
Confidence 34455555664 4455777888999987776665 3666789999999998764
No 250
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=33.06 E-value=86 Score=19.62 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=21.4
Q ss_pred eEeEEEEEeC-ChHHHHHHHhHhcCcEEeeeC
Q 047907 24 SLNHVSRLCR-NVEDSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 24 ~i~hv~i~v~-d~~~s~~FY~~~lG~~~~~~~ 54 (153)
++..+.+.|. +=..+.+||++ +||......
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~~ 142 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGTG 142 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEeec
Confidence 4556666553 44568999988 999987764
No 251
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=33.02 E-value=54 Score=23.80 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=33.2
Q ss_pred EEEEe-CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 97 ISFQC-GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 97 l~f~v-~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
|+.+| +.+..+.+-|+...-++...|....+ +. +..|..++|+++|+...
T Consensus 161 iS~evdDsl~~il~lLr~~D~sFrpvPh~~d~-ak---~~~fqn~~~y~VefLTt 211 (349)
T COG5397 161 ISREVDDSLPPILDLLRSVDPSFRPVPHRSDP-AK---SSAFQNRDGYRVEFLTT 211 (349)
T ss_pred hhHHhcccccHHHHHHhccCcccccCCccCCC-cc---ceeeecCCCeEEEEecc
Confidence 55566 45677777787777666544433222 32 45569999999999874
No 252
>COG3042 Hlx Putative hemolysin [General function prediction only]
Probab=32.86 E-value=1e+02 Score=17.90 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
..+...+.++|.+...... .. |+. ..+..-|||.++|
T Consensus 37 NpAs~yC~~~GG~l~~~~~--~~-G~~--~~~C~LPdGr~~e 73 (85)
T COG3042 37 NPASVYCAQQGGTLEAVKR--ED-GGV--VGMCVLPDGRICE 73 (85)
T ss_pred CHHHHHHHHhCCeeeeEEc--cC-CCE--EEEEECCCCcccH
Confidence 3456778889998754332 22 544 4888999999876
No 253
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=32.81 E-value=1.8e+02 Score=20.56 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
+.+.+..++.|+.++-+.......+..+..+++.+|+|.++..+
T Consensus 69 ~~l~~la~~~~i~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y 112 (284)
T cd07573 69 ARFQALAKELGVVIPVSLFEKRGNGLYYNSAVVIDADGSLLGVY 112 (284)
T ss_pred HHHHHHHHHCCEEEEecceeeCCCCcEEEEEEEECCCCCEEeEE
Confidence 44555666777777654332222245566888999999876543
No 254
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=32.67 E-value=33 Score=17.64 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=10.6
Q ss_pred hHHHHHHHhHhcCc
Q 047907 35 VEDSIDFYTKVLGF 48 (153)
Q Consensus 35 ~~~s~~FY~~~lG~ 48 (153)
.+++++||++-|--
T Consensus 15 ~q~sve~yk~kl~~ 28 (57)
T PF04761_consen 15 YQESVEFYKEKLSV 28 (57)
T ss_pred HHHHHHHHHHHHHH
Confidence 46889999987643
No 255
>PLN02798 nitrilase
Probab=32.47 E-value=1.9e+02 Score=20.67 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCeEEee-cccc-CCCCCceeEEEEeCCCCCeEEEe
Q 047907 104 MEAIEKRLKELDVKYIKR-TVKD-DQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~-~~~~-~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
++.+.+.+++.++-++-. .... ...+..+.+.++.+|+|.++..+
T Consensus 74 ~~~l~~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y 120 (286)
T PLN02798 74 MQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSY 120 (286)
T ss_pred HHHHHHHHHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEE
Confidence 455566666777766533 2111 12244556889999999987654
No 256
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=32.22 E-value=1.9e+02 Score=20.78 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCCCC---CceeEEEEeCCCCCeEEEe
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQSG---NAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~~g---~~~~~~~~~DPdG~~iel~ 148 (153)
.++.+.+.+++.|+.++-+..+....+ ..+.+.++.+|+|.++..+
T Consensus 76 ~~~~l~~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y 124 (302)
T cd07569 76 ETQPLFDRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKY 124 (302)
T ss_pred hHHHHHHHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeee
Confidence 456667777778887765432211113 3456889999999877554
No 257
>PRK14163 heat shock protein GrpE; Provisional
Probab=32.17 E-value=1.7e+02 Score=20.32 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCC---CCCeEEEeec
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDP---DGFMIEICNC 150 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DP---dG~~iel~~~ 150 (153)
..+.+-|...|++.+............--...+.+| +|.++++++.
T Consensus 121 k~l~~~L~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qk 169 (214)
T PRK14163 121 ESLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQP 169 (214)
T ss_pred HHHHHHHHHCCCEEeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeC
Confidence 345567788899988765444322222223445565 5999999875
No 258
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=32.12 E-value=54 Score=21.75 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=19.7
Q ss_pred eEeEEEEEeC-ChHHHHHHHhHhcCcEEee
Q 047907 24 SLNHVSRLCR-NVEDSIDFYTKVLGFVLIE 52 (153)
Q Consensus 24 ~i~hv~i~v~-d~~~s~~FY~~~lG~~~~~ 52 (153)
++..|.+.|. +=..|.+||++ +||....
T Consensus 156 g~~~I~l~v~~~N~~A~~~Y~k-lGF~~~~ 184 (191)
T TIGR02382 156 GLTRLRVATQMGNTAALRLYIR-SGANIES 184 (191)
T ss_pred CCCEEEEEeCCCCHHHHHHHHH-cCCcccc
Confidence 4556666653 22689999998 9998654
No 259
>PHA00159 endonuclease I
Probab=32.01 E-value=1.3e+02 Score=19.38 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=27.9
Q ss_pred EEEeCCHHHHHHHHHHcCCeEEeeccccCC---CCCceeEEEEeCCCCCeEEE
Q 047907 98 SFQCGNMEAIEKRLKELDVKYIKRTVKDDQ---SGNAIDQMFFDDPDGFMIEI 147 (153)
Q Consensus 98 ~f~v~di~~~~~~l~~~G~~~~~~~~~~~~---~g~~~~~~~~~DPdG~~iel 147 (153)
+|+..=-+...+.|.++|+...-+...... .....+.=-|.=|+|.++|+
T Consensus 14 ~fRSgLE~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF~LpnGiiiEv 66 (148)
T PHA00159 14 AFRSGLEDKVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDFLLPNGIIIET 66 (148)
T ss_pred cccchHHHHHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCceecCCCCEEEe
Confidence 344433466779999999877644332211 01111122244688999886
No 260
>PRK14150 heat shock protein GrpE; Provisional
Probab=31.18 E-value=1.7e+02 Score=19.96 Aligned_cols=46 Identities=2% Similarity=-0.013 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCC---CCCeEEEeec
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDP---DGFMIEICNC 150 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DP---dG~~iel~~~ 150 (153)
..+..-|.+.|++.+............-......+| +|.++++++.
T Consensus 127 ~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~ 175 (193)
T PRK14150 127 KSLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQESEDHEPNTVMMVMQK 175 (193)
T ss_pred HHHHHHHHHCCCeeeCCCCCCCCHhHcceeeeeCCCCCCcCEEEEEeeC
Confidence 345577788999988765444321222112345444 4899998875
No 261
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=30.37 E-value=86 Score=18.30 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=15.0
Q ss_pred HHHHHhHhcCcEEeeeCC
Q 047907 38 SIDFYTKVLGFVLIERPP 55 (153)
Q Consensus 38 s~~FY~~~lG~~~~~~~~ 55 (153)
+.+|+++-||+++.-...
T Consensus 49 tQ~Ff~~~~Glpl~M~PN 66 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPN 66 (86)
T ss_pred hHHHHHhccCCceEecCC
Confidence 459999999999887754
No 262
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=30.13 E-value=2e+02 Score=20.24 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++.+.+.+++.++.+.....+.. .+..+.+.++.+|+|.++..+.
T Consensus 68 ~~~l~~~a~~~~i~i~~g~~~~~-~~~~yNs~~~i~~~G~i~~~y~ 112 (279)
T TIGR03381 68 IKRFQALAKELGVVIPVSFFEKA-GNAYYNSLAMIDADGSVLGVYR 112 (279)
T ss_pred HHHHHHHHHHcCcEEEEeeeecC-CCceEEeEEEECCCCCEEEEEE
Confidence 45566666777877654322222 1444567889999998876553
No 263
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=29.91 E-value=77 Score=16.72 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=11.3
Q ss_pred EEEEeCCCCCeEEEee
Q 047907 134 QMFFDDPDGFMIEICN 149 (153)
Q Consensus 134 ~~~~~DPdG~~iel~~ 149 (153)
.|.|.|++|+.+.+--
T Consensus 11 ~F~FYDen~~lVrv~v 26 (54)
T PF12142_consen 11 SFLFYDENGQLVRVKV 26 (54)
T ss_dssp EEEEE-TTS-EEEEEG
T ss_pred eeEEECCCCCEEEEEh
Confidence 5788999999998754
No 264
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=29.64 E-value=1.3e+02 Score=19.87 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=25.4
Q ss_pred CCCceEEEEe--CCHHHHHHHHHHcCCeEEeec
Q 047907 92 SMDNHISFQC--GNMEAIEKRLKELDVKYIKRT 122 (153)
Q Consensus 92 ~~~~hl~f~v--~di~~~~~~l~~~G~~~~~~~ 122 (153)
+.+.++++-. .|+..+.++|++.|.++..-.
T Consensus 104 ~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 104 PNIDAVALVTRDADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred CCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEe
Confidence 4567788888 589999999999999987544
No 265
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=29.60 E-value=1.1e+02 Score=22.15 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=33.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 92 SMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
.|.-|+.+.|+|++. ..+...|=.+...+. .+.+..+.++-+.+++-.++.+++.
T Consensus 153 ~GnPH~V~~Vddv~~--~~~~~~g~~l~~h~~--Fp~~vNV~F~~v~~~~~i~vrv~ER 207 (272)
T COG0253 153 MGNPHLVIFVDDVET--ANLEELGPLLESHEL--FPEGVNVGFVQVLSRDAIRLRVYER 207 (272)
T ss_pred cCCCeEEEEeCCccc--chhhhhhhhhhcCcc--CCCceEEEEEEeCCCCcEEEEEeec
Confidence 577899999998877 333333332222222 2236666677777777777777664
No 266
>PHA02097 hypothetical protein
Probab=29.38 E-value=65 Score=16.68 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=11.1
Q ss_pred EEeCCCCCeEEEee
Q 047907 136 FFDDPDGFMIEICN 149 (153)
Q Consensus 136 ~~~DPdG~~iel~~ 149 (153)
.+.||.||-++++.
T Consensus 45 vv~~~n~ng~~~~h 58 (59)
T PHA02097 45 VVKDANYNGFELVH 58 (59)
T ss_pred EEecCCCCcEEEec
Confidence 37889999888874
No 267
>PRK14148 heat shock protein GrpE; Provisional
Probab=29.28 E-value=1.9e+02 Score=19.80 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeC---CCCCeEEEeec
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDD---PDGFMIEICNC 150 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~D---PdG~~iel~~~ 150 (153)
..+.+-|.+.|++.+.+...+......-....+.+ |+|.++++++.
T Consensus 128 k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qk 176 (195)
T PRK14148 128 KMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQK 176 (195)
T ss_pred HHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeC
Confidence 44557778889998866544332122211334444 45999999875
No 268
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.06 E-value=98 Score=17.60 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=21.2
Q ss_pred CceEEEEeC--CHHHHHHHHHHcCCeEEee
Q 047907 94 DNHISFQCG--NMEAIEKRLKELDVKYIKR 121 (153)
Q Consensus 94 ~~hl~f~v~--di~~~~~~l~~~G~~~~~~ 121 (153)
...+++++. +++++.++|++.|..+...
T Consensus 42 ~vlvGi~~~~~~~~~l~~~l~~~g~~~~dl 71 (81)
T cd04907 42 RVLVGIQVPDADLDELKERLDALGYPYQEE 71 (81)
T ss_pred eEEEEEEeChHHHHHHHHHHHHcCCCeEEC
Confidence 344777773 6788999999999987643
No 269
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=29.05 E-value=1.4e+02 Score=17.99 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.+.+.+.++|+++++-.+....... +....+++.++..|..+
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~~~~~~--~~~~~y~s~~~~~~~~f 77 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIASGKVDN--GQKFFYFSAKTTNGIWF 77 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEEEECTT---EEEEEEEEEBTTS-EE
T ss_pred CcHHHHHHHHHHCCEEEEecCCCCc--cccEEEEEEEcCCCcEE
Confidence 5789999999999997765443321 34455666777776554
No 270
>PF10033 ATG13: Autophagy-related protein 13; InterPro: IPR018731 Members of this family of phosphoproteins are involved in cytoplasm to vacuole transport (Cvt), and more specifically in Cvt vesicle formation. They are probably involved in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage [, , ].
Probab=28.82 E-value=1.7e+02 Score=20.43 Aligned_cols=55 Identities=13% Similarity=0.309 Sum_probs=31.8
Q ss_pred ceEEEEeCCHHHHHHHHHHcC--------Ce-EEeec-cccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 95 NHISFQCGNMEAIEKRLKELD--------VK-YIKRT-VKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 95 ~hl~f~v~di~~~~~~l~~~G--------~~-~~~~~-~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
..+.+.+++.+++.+.++.-- .. .+.+. .+... ......+.+.|.+|++|.++.-
T Consensus 37 kWFNL~~~e~~~~~~~l~~w~~~~~~~~~~pPlvIei~Ld~~~-l~~~~~l~l~d~~g~~~~v~~~ 101 (233)
T PF10033_consen 37 KWFNLEIDESDELREELKRWRSCSDLESRLPPLVIEIYLDTRQ-LSSNQSLVLKDDDGKRWDVCKG 101 (233)
T ss_pred ccEeecCCCcHHHHHHHHHhhhcccccCCCCCEEEEEEEecCC-CCCCCceEecCCCCceeeeccc
Confidence 458888888888777665321 11 11111 11111 1222368899999999998653
No 271
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=28.80 E-value=1.2e+02 Score=17.40 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
+.+..+.+.|+++|+++........ ...+..+.+..-+.|..-
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~~~~~--~~~~daiVvtG~~~n~mg 50 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLENEQD--LQNVDAIVVTGQDTNMMG 50 (80)
T ss_pred CCchHHHHHHHHCCCEEEecCCccc--cCCcCEEEEECCCccccc
Confidence 5788999999999999976543321 223446777777666543
No 272
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=28.77 E-value=2.2e+02 Score=20.42 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
++.+.+.+++.++.++.+..... .+..+...++.+|+|.++..+
T Consensus 78 ~~~l~~~a~~~~i~iv~G~~~~~-~~~~yNs~~vi~~~G~i~~~y 121 (297)
T cd07564 78 LERLAEAARENGIYVVLGVSERD-GGTLYNTQLLIDPDGELLGKH 121 (297)
T ss_pred HHHHHHHHHHcCcEEEEeeEecc-CCceEEEEEEEcCCCCEeeee
Confidence 45555556677887765432222 244556788899999877554
No 273
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=27.92 E-value=65 Score=20.12 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=21.3
Q ss_pred eeEeEEEEEe-CChHHHHHHHhHhcCcEEeeeC
Q 047907 23 MSLNHVSRLC-RNVEDSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 23 ~~i~hv~i~v-~d~~~s~~FY~~~lG~~~~~~~ 54 (153)
.++..+.+.| .+=..+.+||++ |||+.....
T Consensus 109 ~~~~~i~~~v~~~N~~~i~~~~~-~GF~~~g~~ 140 (155)
T PF13420_consen 109 LGIHKIYLEVFSSNEKAINFYKK-LGFEEEGEL 140 (155)
T ss_dssp TT-CEEEEEEETT-HHHHHHHHH-TTEEEEEEE
T ss_pred cCeEEEEEEEecCCHHHHHHHHh-CCCEEEEEE
Confidence 3455555444 456789999999 999998764
No 274
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=27.76 E-value=54 Score=19.23 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=12.2
Q ss_pred EEeCChHHHHHHHhHhcCc
Q 047907 30 RLCRNVEDSIDFYTKVLGF 48 (153)
Q Consensus 30 i~v~d~~~s~~FY~~~lG~ 48 (153)
+.+..-..+.+||+. +||
T Consensus 100 l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 100 LTVEANERARRFYRK-LGF 117 (117)
T ss_dssp EEEEC-HHHHHHHHH-TT-
T ss_pred EEEEeCHHHHHHHHh-CCC
Confidence 444477888999998 886
No 275
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=27.60 E-value=79 Score=23.05 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecCC
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCEN 152 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~~ 152 (153)
.|++.+.+.|+++|+............-+.+ ..++..--|-++||-|.-+
T Consensus 31 gDiekAi~~LRkkG~akA~Kk~~R~a~EG~V-~~~~~~~~~~ivElncETD 80 (290)
T TIGR00116 31 GDFEKAIKNLRESGIAKAAKKADRVAAEGVI-VLKSDGNKAVIVEVNSETD 80 (290)
T ss_pred CCHHHHHHHHHHhchhHHHHhcccccCCcEE-EEEEcCCEEEEEEEecCCc
Confidence 5899999999999986543322222212222 3444344478888877543
No 276
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=27.37 E-value=59 Score=14.37 Aligned_cols=14 Identities=21% Similarity=0.736 Sum_probs=11.4
Q ss_pred eCChHHHHHHHhHh
Q 047907 32 CRNVEDSIDFYTKV 45 (153)
Q Consensus 32 v~d~~~s~~FY~~~ 45 (153)
-.|.+++..||++.
T Consensus 18 ~~d~~~A~~~~~~A 31 (36)
T smart00671 18 KKDLEKALEYYKKA 31 (36)
T ss_pred CcCHHHHHHHHHHH
Confidence 35899999999873
No 277
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=27.22 E-value=1.1e+02 Score=18.52 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=18.7
Q ss_pred CCceeEEEEeCCCCCeEEEeecC
Q 047907 129 GNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 129 g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
|.+.+++|+.+|...++-++++.
T Consensus 37 gi~nYSIfLde~~n~lFgy~E~~ 59 (105)
T COG3254 37 GIRNYSIFLDEEENLLFGYWEYE 59 (105)
T ss_pred CCceeEEEecCCcccEEEEEEEc
Confidence 44556899999999999988875
No 278
>PRK14157 heat shock protein GrpE; Provisional
Probab=27.04 E-value=2.3e+02 Score=19.95 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCC---CCCeEEEeec
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDP---DGFMIEICNC 150 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DP---dG~~iel~~~ 150 (153)
..+.+-|.+.|++.+.+..........--...+.+| +|.++++++.
T Consensus 158 k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~Qk 206 (227)
T PRK14157 158 AKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAEKETVDTVVEA 206 (227)
T ss_pred HHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCcCEEEEEeeC
Confidence 566677888999988654443322222212345565 5999999875
No 279
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=26.88 E-value=1.6e+02 Score=18.02 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=13.6
Q ss_pred eEEEEeCCCCCeEEEee
Q 047907 133 DQMFFDDPDGFMIEICN 149 (153)
Q Consensus 133 ~~~~~~DPdG~~iel~~ 149 (153)
...++.|++|.+...+.
T Consensus 111 p~~~lid~~G~v~~~~~ 127 (140)
T cd03017 111 RSTFLIDPDGKIVKVWR 127 (140)
T ss_pred eeEEEECCCCEEEEEEe
Confidence 36899999998887654
No 280
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=26.86 E-value=1.1e+02 Score=18.86 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=20.7
Q ss_pred eEeEEEEEeC-ChHHHHHHHhHhcCcEEeee
Q 047907 24 SLNHVSRLCR-NVEDSIDFYTKVLGFVLIER 53 (153)
Q Consensus 24 ~i~hv~i~v~-d~~~s~~FY~~~lG~~~~~~ 53 (153)
++.++.+.|. .=..+.+||++ +||+....
T Consensus 96 ~~~~~~~~~~~~N~~a~~~y~k-~Gf~~~~~ 125 (146)
T PRK09491 96 GVATLWLEVRASNAAAIALYES-LGFNEVTI 125 (146)
T ss_pred CCcEEEEEEccCCHHHHHHHHH-cCCEEeee
Confidence 4555665553 34789999999 99987654
No 281
>PRK14147 heat shock protein GrpE; Provisional
Probab=26.85 E-value=2e+02 Score=19.19 Aligned_cols=45 Identities=4% Similarity=-0.011 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCC---CCCeEEEeec
Q 047907 106 AIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDP---DGFMIEICNC 150 (153)
Q Consensus 106 ~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DP---dG~~iel~~~ 150 (153)
.+..-|...|++.+.+..........-......++ +|.++++++.
T Consensus 105 ~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qk 152 (172)
T PRK14147 105 QLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQK 152 (172)
T ss_pred HHHHHHHHCCCEEeCCCCCCCChHHhceeeeecCCCCCcCEEEEEeeC
Confidence 34466778899988764443321222112334343 5999999875
No 282
>PRK03094 hypothetical protein; Provisional
Probab=26.76 E-value=1.4e+02 Score=17.25 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
..+..+.+.|+++|++++.-..... -..+..+.+..-|.|..-
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~~~~~--~~~~Da~VitG~d~n~mg 50 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLRSEQD--AQGCDCCVVTGQDSNVMG 50 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecCcccc--cCCcCEEEEeCCCcceec
Confidence 5788899999999999975432211 122345666666666544
No 283
>COG1218 CysQ 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]
Probab=26.72 E-value=1.2e+02 Score=21.93 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=20.7
Q ss_pred HHHHHHHc--CCeEEeeccccC--CCCCceeEEEEeCC-CCC
Q 047907 107 IEKRLKEL--DVKYIKRTVKDD--QSGNAIDQMFFDDP-DGF 143 (153)
Q Consensus 107 ~~~~l~~~--G~~~~~~~~~~~--~~g~~~~~~~~~DP-dG~ 143 (153)
++++|++. +++++.+..... .....+..||+.|| ||-
T Consensus 54 I~~~L~a~~P~ipvv~EE~~~~~~~~~~~~~rfWLiDPLDGT 95 (276)
T COG1218 54 ILEGLRALFPDIPVVSEEEEAIDWEERLHWDRFWLVDPLDGT 95 (276)
T ss_pred HHHHHHHhCCCCCEEEeccccCCCCCcccCceEEEECCCcCc
Confidence 44667666 466665543211 11233446999999 563
No 284
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=26.42 E-value=1.2e+02 Score=20.06 Aligned_cols=30 Identities=10% Similarity=0.156 Sum_probs=20.8
Q ss_pred eeEeEEEEEeC-ChHHHHHHHhHhcCcEEeee
Q 047907 23 MSLNHVSRLCR-NVEDSIDFYTKVLGFVLIER 53 (153)
Q Consensus 23 ~~i~hv~i~v~-d~~~s~~FY~~~lG~~~~~~ 53 (153)
.++..+.+.|. +=..+.+||++ +||.....
T Consensus 158 ~g~~~i~l~v~~~N~~a~~~yek-~Gf~~~~~ 188 (194)
T PRK10975 158 RGLTRLRVATQMGNLAALRLYIR-SGANIEST 188 (194)
T ss_pred cCCCEEEEEeCCCcHHHHHHHHH-CCCeEeEE
Confidence 34556666653 33578999987 99987654
No 285
>PHA02503 putative transcription regulator; Provisional
Probab=26.30 E-value=49 Score=16.93 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.4
Q ss_pred hHHHHHHHhHhc
Q 047907 35 VEDSIDFYTKVL 46 (153)
Q Consensus 35 ~~~s~~FY~~~l 46 (153)
.+.+++||++-|
T Consensus 15 ~q~sve~yke~l 26 (57)
T PHA02503 15 YQESVEFYKEKL 26 (57)
T ss_pred HHHHHHHHHHHH
Confidence 367889998866
No 286
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=26.24 E-value=1.3e+02 Score=22.53 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=40.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHHcCCeEEee----ccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 92 SMDNHISFQCGNMEAIEKRLKELDVKYIKR----TVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~~G~~~~~~----~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
++...+|-.-+++.+-.++|.+.|+--.+. .++..--|..++.=||..|=-+++||+..+
T Consensus 163 gRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G~~f~~~yFyS~i~~~lEl~g~D 226 (361)
T COG1759 163 GRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVGAPFYFHYFYSPIKDRLELLGID 226 (361)
T ss_pred CceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeeccceeeeeeeccccCceeEeeee
Confidence 445555555578888889999988752211 122222377777889999998889998754
No 287
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=26.22 E-value=1.2e+02 Score=19.09 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEE-EeCC
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMF-FDDP 140 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~-~~DP 140 (153)
..+....++|...|+-....... . |++++++| ..||
T Consensus 57 Stv~rsl~~L~~~GlV~Rek~~~--~-~Ggy~yiY~~i~~ 93 (126)
T COG3355 57 STVYRSLQNLLEAGLVEREKVNL--K-GGGYYYLYKPIDP 93 (126)
T ss_pred HHHHHHHHHHHHcCCeeeeeecc--C-CCceeEEEecCCH
Confidence 45677889999999965433222 2 55555777 4444
No 288
>PRK04374 PII uridylyl-transferase; Provisional
Probab=26.06 E-value=2.9e+02 Score=23.71 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=38.2
Q ss_pred CCceEEEEeCC----HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 93 MDNHISFQCGN----MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 93 ~~~hl~f~v~d----i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
+...+.+.+.| +..+...+.+.|+.+....+.+. .+.....||+.|++|..+
T Consensus 795 ~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~~ 850 (869)
T PRK04374 795 RRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRPL 850 (869)
T ss_pred CeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCcC
Confidence 44556666655 45566788899999987777666 366678999999999864
No 289
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=26.00 E-value=2.9e+02 Score=20.80 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCeEEeeccccCC--CCCceeEEEEeCCCCCeEEEe
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQ--SGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~--~g~~~~~~~~~DPdG~~iel~ 148 (153)
++.+.+.+++.|+.++.+..+... .+..+.+.++.+|+|.++..+
T Consensus 140 ~~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~y 186 (363)
T cd07587 140 TKFCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKS 186 (363)
T ss_pred HHHHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeee
Confidence 455666667778877644322221 134456888999999887554
No 290
>PRK14146 heat shock protein GrpE; Provisional
Probab=25.98 E-value=2.3e+02 Score=19.68 Aligned_cols=46 Identities=7% Similarity=-0.025 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCC---CCCeEEEeec
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDP---DGFMIEICNC 150 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DP---dG~~iel~~~ 150 (153)
..+..-|.+.|++.+.+...+.+....-....+.++ +|.++++++.
T Consensus 142 k~l~~~L~k~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qk 190 (215)
T PRK14146 142 KEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSEETVIDVYQA 190 (215)
T ss_pred HHHHHHHHHCcCeeeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeC
Confidence 345577788899987654444322222112344444 5889998875
No 291
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=25.95 E-value=1.1e+02 Score=18.58 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=18.0
Q ss_pred eEEEEEeCChHHHHHHHhHhc
Q 047907 26 NHVSRLCRNVEDSIDFYTKVL 46 (153)
Q Consensus 26 ~hv~i~v~d~~~s~~FY~~~l 46 (153)
..++|.-.|-++|.+||+.+.
T Consensus 82 c~~GL~Fade~EA~~F~k~v~ 102 (105)
T cd01205 82 CVVGLNFADETEAAEFRKKVL 102 (105)
T ss_pred cEEEEEECCHHHHHHHHHHHH
Confidence 467889999999999999864
No 292
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=25.94 E-value=1.6e+02 Score=17.90 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
.+....+++|.+.|---+..... .+..+.-.+...|++|.+.+....+
T Consensus 24 k~f~~~~~~l~~~G~V~iG~~~g--~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 24 KNFNKAYKELRKKGRVGIGRSKG--RFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHhCCcEEEeeecC--cccCCeEEEEEECCCCcEEEEEEEe
Confidence 45677889999998433332222 2233333688899999999876654
No 293
>PRK13688 hypothetical protein; Provisional
Probab=25.80 E-value=67 Score=20.84 Aligned_cols=17 Identities=47% Similarity=0.743 Sum_probs=14.4
Q ss_pred HHHHHHhHhcCcEEeeeC
Q 047907 37 DSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 37 ~s~~FY~~~lG~~~~~~~ 54 (153)
.+..||.+ +||......
T Consensus 118 ~a~~FY~k-~GF~~~~~~ 134 (156)
T PRK13688 118 KSKDFWLK-LGFTPVEYK 134 (156)
T ss_pred chHHHHHh-CCCEEeEEe
Confidence 57899998 999988765
No 294
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.69 E-value=1.3e+02 Score=16.73 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCe
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFM 144 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ 144 (153)
.+-.+.+.+++.|+.+..-.-++.. +..+...|+.|-+|+.
T Consensus 13 ~L~~iL~~f~~~~inl~~IeSRP~~-~~~~~y~F~id~e~~~ 53 (74)
T cd04929 13 GLAKALKLFQELGINVVHIESRKSK-RRSSEFEIFVDCECDQ 53 (74)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCC-CCCceEEEEEEEEcCH
Confidence 4667778888999988765544433 3334467777777764
No 295
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=25.61 E-value=59 Score=19.52 Aligned_cols=18 Identities=28% Similarity=0.756 Sum_probs=15.1
Q ss_pred EeCChHHHHHHHhHhcCcE
Q 047907 31 LCRNVEDSIDFYTKVLGFV 49 (153)
Q Consensus 31 ~v~d~~~s~~FY~~~lG~~ 49 (153)
-.+++.++.+||.+ +||-
T Consensus 33 G~~~~~~~L~YY~~-igWI 50 (99)
T PF04659_consen 33 GHNNAADALDYYES-IGWI 50 (99)
T ss_pred ccccHHHHHHHHHH-cCCc
Confidence 45789999999999 8874
No 296
>PRK14153 heat shock protein GrpE; Provisional
Probab=25.58 E-value=2.3e+02 Score=19.41 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCeEEeeccccCCCCCceeEEEEeC---CCCCeEEEeec
Q 047907 106 AIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDD---PDGFMIEICNC 150 (153)
Q Consensus 106 ~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~D---PdG~~iel~~~ 150 (153)
.+..-|.+.|++.+.+.....+....-....+.+ |+|.++++++.
T Consensus 122 ~~~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qk 169 (194)
T PRK14153 122 QFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKP 169 (194)
T ss_pred HHHHHHHHCCCeeeCCCCCCCChhHhceeeeeCCCCCCcCEEEEEeeC
Confidence 3446667889998876544432222211234444 45999999875
No 297
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.39 E-value=46 Score=19.62 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHcCCeE
Q 047907 102 GNMEAIEKRLKELDVKY 118 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~ 118 (153)
.+|+++.+.|+++|+++
T Consensus 75 ~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 75 KEIKEAKADLRKKGVDV 91 (91)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 46777888888888753
No 298
>PRK14140 heat shock protein GrpE; Provisional
Probab=25.05 E-value=2.2e+02 Score=19.43 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCC---CCCeEEEeec
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDP---DGFMIEICNC 150 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DP---dG~~iel~~~ 150 (153)
..+..-|.+.|++.+.......+....-....+.+| +|.++++++.
T Consensus 125 k~l~~~L~k~GV~~i~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qk 173 (191)
T PRK14140 125 RQLLEALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFESNEVVEELQK 173 (191)
T ss_pred HHHHHHHHHCCCEeeCCCCCCCChHHhccceeeCCCCCCcCeEEEEeeC
Confidence 445577788899887654433321211112444455 4999998875
No 299
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=24.92 E-value=45 Score=23.89 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=13.2
Q ss_pred EEEEeCCCCCeEEEe
Q 047907 134 QMFFDDPDGFMIEIC 148 (153)
Q Consensus 134 ~~~~~DPdG~~iel~ 148 (153)
++|+.||+|.-++.+
T Consensus 244 ~mYLidPeg~Fvd~~ 258 (280)
T KOG2792|consen 244 FMYLIDPEGEFVDYY 258 (280)
T ss_pred EEEEECCCcceehhh
Confidence 799999999988765
No 300
>PRK10514 putative acetyltransferase; Provisional
Probab=24.86 E-value=68 Score=19.79 Aligned_cols=19 Identities=37% Similarity=0.788 Sum_probs=15.4
Q ss_pred hHHHHHHHhHhcCcEEeeeC
Q 047907 35 VEDSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 35 ~~~s~~FY~~~lG~~~~~~~ 54 (153)
=.++.+||++ +||......
T Consensus 109 N~~a~~~yek-~Gf~~~~~~ 127 (145)
T PRK10514 109 NEQAVGFYKK-MGFKVTGRS 127 (145)
T ss_pred CHHHHHHHHH-CCCEEeccc
Confidence 3589999998 999987653
No 301
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=24.73 E-value=2.4e+02 Score=19.51 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCeEEeeccccC-CCCCceeEEEEeCCCCCeEEEee
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDD-QSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~-~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
++.+.+.+++.++.++-...... ..+..+.++++.+|+|.++..+.
T Consensus 67 ~~~l~~~a~~~~i~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~ 113 (258)
T cd07584 67 VRLFSELAKELGVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYR 113 (258)
T ss_pred HHHHHHHHHHcCeEEEEeehcccCCCCceEEEEEEECCCCCEEeEEE
Confidence 45555666677877765433221 12445567889999998876654
No 302
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=24.55 E-value=1.8e+02 Score=20.03 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
+..+++.++|.++|++-+.. ... +.+.-|+|.++|=+
T Consensus 157 ~~AQ~vad~Lv~aGVkGIlN-------FtP---v~l~~pe~V~V~~i 193 (211)
T COG2344 157 EHAQEVADRLVKAGVKGILN-------FTP---VRLQVPEGVIVENI 193 (211)
T ss_pred HHHHHHHHHHHHcCCceEEe-------ccc---eEecCCCCcEEEEe
Confidence 56677888888888876543 112 66888998888754
No 303
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=24.51 E-value=1.6e+02 Score=17.62 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=25.5
Q ss_pred eCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeC
Q 047907 101 CGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDD 139 (153)
Q Consensus 101 v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~D 139 (153)
.+++++.+.-+.+.|+.+.....+++.+|.-...+.+.+
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~s 45 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISS 45 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-S
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCC
Confidence 367777888888899988877777776664334454443
No 304
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=24.47 E-value=90 Score=21.33 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCC---CCeEEEeec
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPD---GFMIEICNC 150 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPd---G~~iel~~~ 150 (153)
.|++.+.+.|+++|+.............+.. ..++ .|+ |-++||-+.
T Consensus 31 gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i-~~~i-~~~~~~~~lve~n~E 80 (198)
T PRK12332 31 GDMEKAIEWLREKGLAKAAKKAGRVAAEGLV-GSYI-HTGGRIGVLVELNCE 80 (198)
T ss_pred CCHHHHHHHHHHhhhhHHHHhccccccCceE-EEEE-ecCCCEEEEEEEecc
Confidence 6899999999999986643322222212222 3344 444 455666554
No 305
>PRK13577 diaminopimelate epimerase; Provisional
Probab=24.46 E-value=2e+02 Score=20.59 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=31.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeec
Q 047907 92 SMDNHISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
.|.-|+.+.|+|++.+. +...|-.+...+. .+.+....++++.|++...+.+++.
T Consensus 156 ~G~PH~Vv~V~~~~~~~--~~~~g~~~~~~~~--fp~~~Nv~f~~~~~~~~i~~R~~Er 210 (281)
T PRK13577 156 IGNPHCVVLLDEISEEL--ARELGPLIETHPR--FPNRTNVQFLKVLDRNTIQIEIWER 210 (281)
T ss_pred CCCCcEEEEeCCcchhh--HHhhCccccccCC--CCCCceEEEEEEccCCeEEEEEECC
Confidence 58889999999876542 2333433322221 1225555567777776555555543
No 306
>PRK05007 PII uridylyl-transferase; Provisional
Probab=24.44 E-value=1.6e+02 Score=25.20 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
+..+...|...|+.+....+.....|.....|++.|++|..+
T Consensus 715 fa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~ 756 (884)
T PRK05007 715 FAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPL 756 (884)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCC
Confidence 566778888899999877655554466778899999999865
No 307
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.35 E-value=1.4e+02 Score=16.43 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEe--CCHHHHHHHHHHcCCeEE
Q 047907 97 ISFQC--GNMEAIEKRLKELDVKYI 119 (153)
Q Consensus 97 l~f~v--~di~~~~~~l~~~G~~~~ 119 (153)
+++.+ +|.+.+.+.|++.|+.+.
T Consensus 43 ~al~~~~~d~~~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 43 LALRFEPEDLEKIKEILEENGIEYE 67 (73)
T ss_pred EEEEEChhhHHHHHHHHHHCCCCee
Confidence 55555 799999999999999874
No 308
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=24.34 E-value=80 Score=25.24 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.0
Q ss_pred eEEEEEeCChHHHHHHHhHhcCcEEeee
Q 047907 26 NHVSRLCRNVEDSIDFYTKVLGFVLIER 53 (153)
Q Consensus 26 ~hv~i~v~d~~~s~~FY~~~lG~~~~~~ 53 (153)
.|+-|.+...+++.+||++.+|......
T Consensus 434 ~~Lplhi~~t~~Ae~~y~~~~G~rll~v 461 (572)
T KOG1249|consen 434 EQLPLHIGPTEEAEAFYEKHLGTRLLLV 461 (572)
T ss_pred CcceeeecchhhHHHHHHHhcCCeeeec
Confidence 4677888899999999999999988743
No 309
>PRK09831 putative acyltransferase; Provisional
Probab=24.29 E-value=86 Score=19.59 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=15.4
Q ss_pred HHHHHHHhHhcCcEEeeeC
Q 047907 36 EDSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 36 ~~s~~FY~~~lG~~~~~~~ 54 (153)
..+..||++ +||......
T Consensus 110 ~~a~~~Y~k-~Gf~~~g~~ 127 (147)
T PRK09831 110 ITAKPFFER-YGFQTVKQQ 127 (147)
T ss_pred hhhHHHHHH-CCCEEeecc
Confidence 578999999 999988764
No 310
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=24.21 E-value=2.3e+02 Score=19.02 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=33.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHH----cCC--eEEeecccc----C-----CCCCceeEEEEeCCCCCeEEEeec
Q 047907 92 SMDNHISFQCGNMEAIEKRLKE----LDV--KYIKRTVKD----D-----QSGNAIDQMFFDDPDGFMIEICNC 150 (153)
Q Consensus 92 ~~~~hl~f~v~di~~~~~~l~~----~G~--~~~~~~~~~----~-----~~g~~~~~~~~~DPdG~~iel~~~ 150 (153)
.+..-+++.+++.+...+..++ .++ +++..+... . ..|...+..|+.||+|.+..+...
T Consensus 64 ~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 64 LGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred CCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEe
Confidence 3455688888887665544433 233 333322111 0 012223689999999999887654
No 311
>PF07566 DUF1543: Domain of Unknown Function (DUF1543); InterPro: IPR011440 This domain is found as 1-2 copies in a small family of proteins of unknown function.; PDB: 2QSD_F.
Probab=24.21 E-value=68 Score=16.59 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=18.2
Q ss_pred CceEEEEe-CCHHHHHHHHHHcCC
Q 047907 94 DNHISFQC-GNMEAIEKRLKELDV 116 (153)
Q Consensus 94 ~~hl~f~v-~di~~~~~~l~~~G~ 116 (153)
.|.+.|.| ++++++..++++.=.
T Consensus 5 ~Hd~~fvVa~s~~ea~~~~k~~W~ 28 (52)
T PF07566_consen 5 QHDVRFVVAESIEEAKPKAKQRWF 28 (52)
T ss_dssp EECEEEEEESSCHHHHHHHHCC-S
T ss_pred eeeeEEEEECCHHHHHHHHHHhhh
Confidence 45688888 889999999988754
No 312
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=23.97 E-value=1.7e+02 Score=24.96 Aligned_cols=52 Identities=10% Similarity=0.240 Sum_probs=37.0
Q ss_pred CceEEEEeCCH----HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 94 DNHISFQCGNM----EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 94 ~~hl~f~v~di----~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
...|.+.+.|- ..+.+.+.+.|+.+....+.+.. ......||+.|++|..++
T Consensus 783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g-erv~D~Fyv~~~~g~~l~ 838 (854)
T PRK01759 783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG-EKAEDFFILTNQQGQALD 838 (854)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC-ceEEEEEEEECCCCCcCC
Confidence 34566666664 44557778889999877766653 445679999999998664
No 313
>PHA00212 putative transcription regulator
Probab=23.95 E-value=57 Score=17.05 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=9.1
Q ss_pred hHHHHHHHhHhc
Q 047907 35 VEDSIDFYTKVL 46 (153)
Q Consensus 35 ~~~s~~FY~~~l 46 (153)
.+.+++||++-|
T Consensus 17 ~q~sve~yk~~l 28 (63)
T PHA00212 17 QQHSVEWYKKQL 28 (63)
T ss_pred HHHHHHHHHHHH
Confidence 367889998865
No 314
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=23.91 E-value=28 Score=19.86 Aligned_cols=24 Identities=8% Similarity=0.271 Sum_probs=13.9
Q ss_pred EEEeCCHHHHHHHHHHcCCeEEee
Q 047907 98 SFQCGNMEAIEKRLKELDVKYIKR 121 (153)
Q Consensus 98 ~f~v~di~~~~~~l~~~G~~~~~~ 121 (153)
.+..+.++.++..|.+.|+.++..
T Consensus 35 ~~~~e~id~i~~~L~~~gI~Vvd~ 58 (82)
T PF03979_consen 35 DLDPEQIDEIYDTLEDEGIEVVDE 58 (82)
T ss_dssp ---HHHHHHHHHHHHTT----B--
T ss_pred CCCHHHHHHHHHHHHHCCCEEecC
Confidence 356678999999999999999873
No 315
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=23.91 E-value=2.3e+02 Score=18.82 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=5.3
Q ss_pred EEEEeCCCCC
Q 047907 134 QMFFDDPDGF 143 (153)
Q Consensus 134 ~~~~~DPdG~ 143 (153)
.+..||.+|.
T Consensus 80 vivaR~~~G~ 89 (172)
T PF02222_consen 80 VIVARDQDGE 89 (172)
T ss_dssp EEEEEETTSE
T ss_pred EEEEEcCCCC
Confidence 3555556553
No 316
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=23.90 E-value=2.3e+02 Score=21.77 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=31.0
Q ss_pred ceEEEEeC-CHHH------HHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEe
Q 047907 95 NHISFQCG-NMEA------IEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 95 ~hl~f~v~-di~~------~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~ 148 (153)
.|+++..+ +.+. +.+.+.++|+...-.+.+...+... ..++.|++|..|+.+
T Consensus 177 ~~~~~~~d~~~ED~~T~~yL~~~a~~AG~~t~~~~i~di~~~~~--g~f~vD~~g~~I~~l 235 (397)
T PHA02117 177 GCLNIVATGQVEDFVTIAYLAETATEAGAVVKFFDIQEIQLSDR--GPFFVDGEDAPIDMC 235 (397)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHHHcCCceEEeehheEEEcCC--CceEECCCCCEeeee
Confidence 35555445 3444 3466778898876666555433322 123349999999876
No 317
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=23.86 E-value=1.8e+02 Score=17.59 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=20.5
Q ss_pred CCceEEEEe---CCHHHHHHHHHHcCCeEEeecc
Q 047907 93 MDNHISFQC---GNMEAIEKRLKELDVKYIKRTV 123 (153)
Q Consensus 93 ~~~hl~f~v---~di~~~~~~l~~~G~~~~~~~~ 123 (153)
|+..+.+.+ .+.+.+.++|+..|+.....+.
T Consensus 13 GvR~LvL~T~~~~~~~~~~~rL~~~~I~y~iq~v 46 (101)
T PF09633_consen 13 GVRQLVLHTLPKRYEEFAIARLERQGIDYFIQPV 46 (101)
T ss_dssp TS-SEEEEEEEGGGHHHHHHHHHHTT--EEEEE-
T ss_pred hhhhHhhhhCCHhhHHHHHHHHHHCCCCEEEEEc
Confidence 344455554 7889999999999999876655
No 318
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=23.86 E-value=82 Score=18.70 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=20.1
Q ss_pred EeEEEEEeC-ChHHHHHHHhHhcCcEEeeeC
Q 047907 25 LNHVSRLCR-NVEDSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 25 i~hv~i~v~-d~~~s~~FY~~~lG~~~~~~~ 54 (153)
+.++.+.+. .-..+.+||++ +||......
T Consensus 88 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~ 117 (131)
T TIGR01575 88 VNEIFLEVRVSNIAAQALYKK-LGFNEIAIR 117 (131)
T ss_pred CCeEEEEEecccHHHHHHHHH-cCCCccccc
Confidence 455655553 34668899988 999877653
No 319
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=23.67 E-value=73 Score=23.36 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=22.1
Q ss_pred ceeEeEEEEEe------CChHHHHHHHhHhcCcEEee
Q 047907 22 LMSLNHVSRLC------RNVEDSIDFYTKVLGFVLIE 52 (153)
Q Consensus 22 ~~~i~hv~i~v------~d~~~s~~FY~~~lG~~~~~ 52 (153)
-..++|+++.| .|+++..++.++ .|++...
T Consensus 182 G~~~NH~T~~v~~l~~~~dI~~v~~~l~~-~G~~~n~ 217 (302)
T PF07063_consen 182 GYHINHFTPRVNRLKKFLDIDAVNAFLKE-RGIPMND 217 (302)
T ss_dssp TCS-SEEEEETTT-TT-S-HHHHHHHHHH-TT--B--
T ss_pred ccccceeeceeecccccccHHHHHHHHHH-cCCCccc
Confidence 45689999999 999999999999 9999884
No 320
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=23.60 E-value=1.3e+02 Score=16.26 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=11.6
Q ss_pred EEEEeCCCCCeEEEee
Q 047907 134 QMFFDDPDGFMIEICN 149 (153)
Q Consensus 134 ~~~~~DPdG~~iel~~ 149 (153)
.-.+...||+++++..
T Consensus 14 ~h~V~T~DGYiL~l~R 29 (63)
T PF04083_consen 14 EHEVTTEDGYILTLHR 29 (63)
T ss_dssp EEEEE-TTSEEEEEEE
T ss_pred EEEEEeCCCcEEEEEE
Confidence 4668888999888864
No 321
>PF11782 DUF3319: Protein of unknown function (DUF3319); InterPro: IPR021753 This is a family of short bacterial proteins, a few of which are annotated as being minor tail protein. Otherwise the function is unknown.
Probab=23.11 E-value=60 Score=19.02 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=12.2
Q ss_pred CChHHHHHHHhHhcC
Q 047907 33 RNVEDSIDFYTKVLG 47 (153)
Q Consensus 33 ~d~~~s~~FY~~~lG 47 (153)
.-+.++++||++ +|
T Consensus 35 ~~vKksIdww~d-t~ 48 (88)
T PF11782_consen 35 FEVKKSIDWWCD-TG 48 (88)
T ss_pred HHHHHHHHHHHh-cc
Confidence 468999999999 77
No 322
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=23.08 E-value=1.2e+02 Score=18.09 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=16.9
Q ss_pred eCCHHHHHHHHHHcCCeEEee
Q 047907 101 CGNMEAIEKRLKELDVKYIKR 121 (153)
Q Consensus 101 v~di~~~~~~l~~~G~~~~~~ 121 (153)
+++.+.+.+.|.++|+.+...
T Consensus 45 ~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 45 LPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred CChHHHHHHHHHHCCCCcceE
Confidence 466778999999999988543
No 323
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=22.99 E-value=1.1e+02 Score=16.88 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=18.3
Q ss_pred ceEEEEe----CCHHHHHHHHHHcCCeEE
Q 047907 95 NHISFQC----GNMEAIEKRLKELDVKYI 119 (153)
Q Consensus 95 ~hl~f~v----~di~~~~~~l~~~G~~~~ 119 (153)
.++-+.+ ++++++.++|+++|+.+.
T Consensus 46 G~l~l~l~g~~~~~~~a~~~L~~~~v~vE 74 (76)
T PF09383_consen 46 GILILELPGDDEEIEKAIAYLREQGVEVE 74 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHCCCeEE
Confidence 3455555 347899999999998874
No 324
>PRK14141 heat shock protein GrpE; Provisional
Probab=22.94 E-value=2.7e+02 Score=19.33 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeC---CCCCeEEEeec
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDD---PDGFMIEICNC 150 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~D---PdG~~iel~~~ 150 (153)
..+..-|.+.|++.+.+..........-....+.+ ++|.++++++.
T Consensus 125 k~l~~vLek~GV~~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qk 173 (209)
T PRK14141 125 RAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQA 173 (209)
T ss_pred HHHHHHHHHCCCEEECCCCCCCChHHhceeeeecCCCCCcCEEEEEeeC
Confidence 35567788899998876543332121111233444 36889998875
No 325
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=22.86 E-value=1.1e+02 Score=19.32 Aligned_cols=17 Identities=12% Similarity=0.387 Sum_probs=14.7
Q ss_pred EEEEeCCCCCeEEEeec
Q 047907 134 QMFFDDPDGFMIEICNC 150 (153)
Q Consensus 134 ~~~~~DPdG~~iel~~~ 150 (153)
..|+.|++|.++.....
T Consensus 122 ~tflID~~G~v~~~~~g 138 (153)
T TIGR02540 122 WKYLVNPEGQVVKFWRP 138 (153)
T ss_pred EEEEEcCCCcEEEEECC
Confidence 48999999999988764
No 326
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=22.85 E-value=2.2e+02 Score=18.35 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCC---CCeEEEeec
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPD---GFMIEICNC 150 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPd---G~~iel~~~ 150 (153)
+.+.+-|...|++.+.+..........--.....+|+ |-+++++..
T Consensus 99 ~~l~~~L~~~Gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~ 147 (165)
T PF01025_consen 99 KQLEDILEKNGVEEIEPVGEPFDPNLHEAVETVPDPDKEPGTIVEVVRP 147 (165)
T ss_dssp HHHHHHHHTTTEEEE--TSSB--TTTEEEEEEECSSSS-CTBEEEECC-
T ss_pred HHHHHHHHHCCCEecCCCCCCCCHHHheeheecCcCCCCcCeEEEEEec
Confidence 3455677788999887764443323222234455554 888888764
No 327
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=22.70 E-value=1.9e+02 Score=24.72 Aligned_cols=50 Identities=14% Similarity=0.316 Sum_probs=35.8
Q ss_pred EEEEeCC----HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 97 ISFQCGN----MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 97 l~f~v~d----i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
+.+.+.| +..+...|...|+.+....+-....|.....|++.|++|..++
T Consensus 680 V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~ 733 (854)
T PRK01759 680 IFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE 733 (854)
T ss_pred EEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC
Confidence 5555555 3556677788899998776555344667789999999998653
No 328
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=22.61 E-value=1.7e+02 Score=17.95 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHcCCeEEee
Q 047907 103 NMEAIEKRLKELDVKYIKR 121 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~ 121 (153)
+++++.++|.+.|++....
T Consensus 66 ~~~~v~~~l~~lG~~~E~~ 84 (117)
T PF14085_consen 66 DIEAVREELEALGCTVEGF 84 (117)
T ss_pred hHHHHHHHHHHcCCeEEcc
Confidence 5799999999999988643
No 329
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=22.38 E-value=3e+02 Score=19.77 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCC--CCceeEEEEeCCCCCeEEEe
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQS--GNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~--g~~~~~~~~~DPdG~~iel~ 148 (153)
++.+.+..++.++.+.....+.... +..+.+.++.+|+|.++..+
T Consensus 72 ~~~l~~lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~Y 118 (291)
T cd07565 72 TDIFAEACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKY 118 (291)
T ss_pred HHHHHHHHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEE
Confidence 4555566667777654332211111 33456888999999876554
No 330
>PRK13287 amiF formamidase; Provisional
Probab=22.32 E-value=3.3e+02 Score=20.17 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCCCCC-ceeEEEEeCCCCCeEEEe
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQSGN-AIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~~g~-~~~~~~~~DPdG~~iel~ 148 (153)
.++.+.+.+++.++.+.....+....+. .+.+.++.+|+|.++..+
T Consensus 84 ~~~~l~~~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~Y 130 (333)
T PRK13287 84 EVDAFAQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKY 130 (333)
T ss_pred HHHHHHHHHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEE
Confidence 3566666777777765443222222132 456888999999876544
No 331
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=22.29 E-value=1.8e+02 Score=20.73 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeE
Q 047907 104 MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMI 145 (153)
Q Consensus 104 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~i 145 (153)
.+++.+...++|+++... ...+=++++.||+++.+
T Consensus 150 ~~~i~k~wk~rgi~F~~~-------k~slISV~~h~~d~~~l 184 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNND-------KASLISVFLHDPDDNSL 184 (250)
T ss_pred HHHHHHHHHHcCceeCCC-------ceEEEEEEEEcCCCCeE
Confidence 355667778889998211 22344789999987654
No 332
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=22.21 E-value=2.9e+02 Score=20.84 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCC--CceeEEEEeCCCCCeEEEe
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSG--NAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g--~~~~~~~~~DPdG~~iel~ 148 (153)
+.+.+.+++.++.++-........+ ..+.+.++.+|+|..+..+
T Consensus 221 ~~l~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y 266 (391)
T TIGR00546 221 DRLKLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRY 266 (391)
T ss_pred HHHHHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccc
Confidence 3445556677887765433222111 3456889999999765543
No 333
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=21.95 E-value=1.9e+02 Score=18.73 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=22.4
Q ss_pred eeEeEEEEEeC-ChHHHHHHHhHhcCcEEeeeC
Q 047907 23 MSLNHVSRLCR-NVEDSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 23 ~~i~hv~i~v~-d~~~s~~FY~~~lG~~~~~~~ 54 (153)
.++..|.+.|. +=.+|.+||.+ +||......
T Consensus 115 ~~~~rv~~~v~~~N~~s~~~yek-~GF~~~~~~ 146 (186)
T PRK15130 115 LNLYKLYLIVDKENEKAIHIYRK-LGFEVEGEL 146 (186)
T ss_pred CCceEEEEEEccCCHHHHHHHHH-CCCEEEEEE
Confidence 34556666664 34589999999 999987654
No 334
>PRK09377 tsf elongation factor Ts; Provisional
Probab=21.89 E-value=1.2e+02 Score=22.12 Aligned_cols=49 Identities=12% Similarity=0.214 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEeecC
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICNCE 151 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~~~ 151 (153)
.|++.+.+.|+++|+............-+.+ .++..+--|-++||-|.-
T Consensus 32 gD~ekAi~~Lrk~G~akA~Kk~~R~a~EG~I-~~~~~~~~~~~vElncET 80 (290)
T PRK09377 32 GDIEKAIEWLRKKGLAKAAKKAGRVAAEGLV-AAKVDGNKGVLVEVNSET 80 (290)
T ss_pred CCHHHHHHHHHHhchhhHHHhcCccccceEE-EEEeCCCEEEEEEEecCC
Confidence 6899999999999987643322222112222 234434457788887654
No 335
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=21.89 E-value=81 Score=19.22 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=10.4
Q ss_pred EEEeCCCCCeEE
Q 047907 135 MFFDDPDGFMIE 146 (153)
Q Consensus 135 ~~~~DPdG~~ie 146 (153)
+.+.||||+++-
T Consensus 21 ARlyd~dG~Ll~ 32 (112)
T PF13756_consen 21 ARLYDPDGNLLA 32 (112)
T ss_pred EEEECCCCCEEe
Confidence 889999999873
No 336
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=21.84 E-value=1.4e+02 Score=18.85 Aligned_cols=20 Identities=5% Similarity=-0.102 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHcCCeEEee
Q 047907 102 GNMEAIEKRLKELDVKYIKR 121 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~ 121 (153)
.+.+.+.+.|.++|+.+...
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi 69 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSI 69 (127)
T ss_pred chHHHHHHHHHHCCCCcceE
Confidence 78899999999999988553
No 337
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=21.82 E-value=3e+02 Score=19.41 Aligned_cols=40 Identities=13% Similarity=0.326 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCe
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFM 144 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ 144 (153)
+.+.+.+++.++.++.........+..+...++.+|+|.+
T Consensus 75 ~~l~~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v 114 (280)
T cd07574 75 ALFSELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI 114 (280)
T ss_pred HHHHHHHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE
Confidence 4444555666787764422111224455678899999975
No 338
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=21.58 E-value=54 Score=14.90 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.0
Q ss_pred ChHHHHHHHhHh
Q 047907 34 NVEDSIDFYTKV 45 (153)
Q Consensus 34 d~~~s~~FY~~~ 45 (153)
|.+++.+||++.
T Consensus 23 d~~~A~~~~~~A 34 (39)
T PF08238_consen 23 DYEKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccchHHHHHHH
Confidence 789999999863
No 339
>PF15590 Imm15: Immunity protein 15
Probab=21.22 E-value=78 Score=17.56 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=12.4
Q ss_pred EEEeCC-CCCeEEEeecC
Q 047907 135 MFFDDP-DGFMIEICNCE 151 (153)
Q Consensus 135 ~~~~DP-dG~~iel~~~~ 151 (153)
.+|.|| ||..|+.+-+.
T Consensus 27 ~~y~DP~D~r~W~~~~~~ 44 (69)
T PF15590_consen 27 TLYQDPRDGRYWEKSYPE 44 (69)
T ss_pred hhccCCCCCceeEEecCc
Confidence 568888 58888877554
No 340
>PRK10562 putative acetyltransferase; Provisional
Probab=20.93 E-value=85 Score=19.51 Aligned_cols=20 Identities=20% Similarity=0.654 Sum_probs=16.1
Q ss_pred ChHHHHHHHhHhcCcEEeeeC
Q 047907 34 NVEDSIDFYTKVLGFVLIERP 54 (153)
Q Consensus 34 d~~~s~~FY~~~lG~~~~~~~ 54 (153)
+=..+.+||++ +||......
T Consensus 107 ~N~~s~~~y~k-~Gf~~~~~~ 126 (145)
T PRK10562 107 KNQRAVNFYHA-QGFRIVDSA 126 (145)
T ss_pred CChHHHHHHHH-CCCEEcccc
Confidence 34579999999 999997653
No 341
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.85 E-value=86 Score=23.09 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=19.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHcCCe
Q 047907 93 MDNHISFQCGNMEAIEKRLKELDVK 117 (153)
Q Consensus 93 ~~~hl~f~v~di~~~~~~l~~~G~~ 117 (153)
..-||+|.|+|+|+.+..+.-...+
T Consensus 168 tYP~icFavD~FdevF~dvvvrDge 192 (390)
T KOG2465|consen 168 TYPEICFAVDDFDEVFDDVVVRDGE 192 (390)
T ss_pred ccceEEEEecCHHHhhhhhEEecCc
Confidence 5679999999999998776544433
No 342
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=20.61 E-value=33 Score=19.22 Aligned_cols=16 Identities=13% Similarity=0.401 Sum_probs=13.2
Q ss_pred EEEeCChHHHHHHHhH
Q 047907 29 SRLCRNVEDSIDFYTK 44 (153)
Q Consensus 29 ~i~v~d~~~s~~FY~~ 44 (153)
.|.+.|++.+..||+.
T Consensus 3 ~i~I~dIE~AIN~WR~ 18 (71)
T PF12512_consen 3 DISITDIEAAINYWRA 18 (71)
T ss_pred ccCHHHHHHHHHHHHh
Confidence 3567889999999987
No 343
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=20.56 E-value=3.4e+02 Score=19.66 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCeEEeeccccCCC--CCceeEEEEeCCCCCeEEEe
Q 047907 105 EAIEKRLKELDVKYIKRTVKDDQS--GNAIDQMFFDDPDGFMIEIC 148 (153)
Q Consensus 105 ~~~~~~l~~~G~~~~~~~~~~~~~--g~~~~~~~~~DPdG~~iel~ 148 (153)
+.+.+..++.++.++......... +..+.+..+.||+|.++..+
T Consensus 72 ~~l~~lAk~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~Y 117 (295)
T cd07566 72 EWAREVAKKFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNY 117 (295)
T ss_pred HHHHHHHHhcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEE
Confidence 333344456677765442222111 23456888999999876544
No 344
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=20.50 E-value=2.2e+02 Score=20.63 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCC
Q 047907 102 GNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPD 141 (153)
Q Consensus 102 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPd 141 (153)
+..+++.+.+++.|+.+...+.... -. .++|.+||.
T Consensus 38 aQh~~lve~l~~~gv~V~ll~~~~~--~P--d~VFt~D~~ 73 (267)
T COG1834 38 AQHEALVEALEKNGVEVHLLPPIEG--LP--DQVFTRDPG 73 (267)
T ss_pred HHHHHHHHHHHHCCCEEEEcCcccC--CC--cceEeccce
Confidence 5567788999999999976553221 11 268899884
No 345
>PF00594 Gla: Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; InterPro: IPR000294 The GLA (gamma-carboxyglutamic acid-rich) domain contains glutamate residues that have been post-translationally modified by vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla) [, , ]. All glutamic acid (Glu) residues present in the GLA domain are potential carboxylation sites; in coagulation proteins, all Gu residues are modified to Gla, while in osteocalcin and matrix Gla proteins only some Glu residues are modified to Gla. The GLA domain is responsible for the high-affinity binding of calcium ions. It starts at the N-terminal extremity of the mature form of proteins and ends with a conserved aromatic residue; a conserved Gla-x(3)-Gla-x-Cys motif [] is found in the middle of the domain which seems to be important for substrate recognition by the carboxylase. The 3D structure of the GLA domain has been solved [, ]. Calcium ions induce conformational changes in the GLA domain that and are necessary for the proper folding of the GLA domain. A common structural feature of functional GLA domains is the clustering of N-terminal hydrophobic residues into a hydrophobic patch that mediates interaction with the cell surface membrane []. Proteins known to contain a GLA domain include []: Coagulation factor X [] Coagulation factor VII [] Coagulation factor IX [] Coagulation factor XIV (vitamin K-dependent protein C) [] Vitamin K-dependent protein S [] Vitamin K-dependent protein Z [] Prothrombin Transthyretin Osteocalcin (also known as bone-Gla protein, BGP) Matrix Gla protein (MGP) [] Inter-alpha-trypsin inhibitor heavy chain H2 Growth arrest-specific protein 6 (Gas-6) [] ; GO: 0005509 calcium ion binding, 0005576 extracellular region; PDB: 1Q3M_A 1VZM_C 2PF1_A 1NL2_A 1NL1_A 2SPT_A 2PF2_A 2ZP0_L 1W0Y_L 2AEI_L ....
Probab=20.48 E-value=93 Score=15.30 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=9.3
Q ss_pred ChHHHHHHHhHhcC
Q 047907 34 NVEDSIDFYTKVLG 47 (153)
Q Consensus 34 d~~~s~~FY~~~lG 47 (153)
|...+.+||+..+|
T Consensus 29 ~~~~t~~fw~~Y~g 42 (42)
T PF00594_consen 29 DTEGTNAFWKKYFG 42 (42)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred ChHhHHHHHHHhcC
Confidence 45667778877654
No 346
>PRK03624 putative acetyltransferase; Provisional
Probab=20.47 E-value=1.1e+02 Score=18.26 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=17.8
Q ss_pred EeEEEEEeC-ChHHHHHHHhHhcCcEEee
Q 047907 25 LNHVSRLCR-NVEDSIDFYTKVLGFVLIE 52 (153)
Q Consensus 25 i~hv~i~v~-d~~~s~~FY~~~lG~~~~~ 52 (153)
+..+.+.+. +=..+.+||++ +||....
T Consensus 102 ~~~~~~~~~~~N~~~~~~y~k-~GF~~~~ 129 (140)
T PRK03624 102 CPKINLQVREDNDAVLGFYEA-LGYEEQD 129 (140)
T ss_pred CCEEEEEEecCcHHHHHHHHH-cCCcccc
Confidence 444444443 44678899987 9998654
No 347
>PTZ00056 glutathione peroxidase; Provisional
Probab=20.41 E-value=2.9e+02 Score=18.69 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=13.3
Q ss_pred EEEEeCCCCCeEEEee
Q 047907 134 QMFFDDPDGFMIEICN 149 (153)
Q Consensus 134 ~~~~~DPdG~~iel~~ 149 (153)
..|+.|++|+++....
T Consensus 147 ~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 147 GKFLVNKSGNVVAYFS 162 (199)
T ss_pred EEEEECCCCcEEEEeC
Confidence 4889999999997664
No 348
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=20.39 E-value=3.5e+02 Score=19.72 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=33.7
Q ss_pred CceEEEEeCC----HHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEE
Q 047907 94 DNHISFQCGN----MEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIE 146 (153)
Q Consensus 94 ~~hl~f~v~d----i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~ie 146 (153)
-..+.|.+.| +-+++.-+..+|+....-.-++.. +.-+..+|+.|-+|+.-+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k-~~~~~Y~F~iD~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLK-TGLGEYLFFIDIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccC-CCCeeEEEEEEEecCcCc
Confidence 4568888865 456667777889876544333332 344456888888887644
No 349
>PHA02087 hypothetical protein
Probab=20.32 E-value=1.2e+02 Score=16.83 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=13.9
Q ss_pred EEEEeCCCCCeEEEeec
Q 047907 134 QMFFDDPDGFMIEICNC 150 (153)
Q Consensus 134 ~~~~~DPdG~~iel~~~ 150 (153)
...+.|.||..||+-+.
T Consensus 46 ~y~lvdsdg~~ielpe~ 62 (83)
T PHA02087 46 QYMLVDSDGVKIELPES 62 (83)
T ss_pred eEEEEcCCCcEEECCcc
Confidence 46689999999998654
No 350
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=20.17 E-value=1.7e+02 Score=16.02 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCC
Q 047907 103 NMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDG 142 (153)
Q Consensus 103 di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG 142 (153)
.+-.+.+.+.++|+.+..-.-++.. +..+...++.|-+|
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~-~~~~~y~Ffvd~~~ 51 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSR-RNGSEYEFFVDCEV 51 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCC-CCCceEEEEEEEEc
Confidence 4677788889999988765444433 33344566666665
No 351
>PF03778 DUF321: Protein of unknown function (DUF321) ; InterPro: IPR005529 This entry represents a group of tandem repeats, found in Arabidopsis species, whose sequence is distantly related to the FARP (FMRFamide) group of neuropeptides (IPR002544 from INTERPRO). The function of these repeats is not known, being mostly found in uncharacterised proetins, but they are also present in the nuclear migration protein NUM1 [].
Probab=20.13 E-value=40 Score=13.81 Aligned_cols=13 Identities=23% Similarity=0.669 Sum_probs=8.8
Q ss_pred HHHhHhcCcEEee
Q 047907 40 DFYTKVLGFVLIE 52 (153)
Q Consensus 40 ~FY~~~lG~~~~~ 52 (153)
+||++..||....
T Consensus 2 rFwreN~gftFla 14 (20)
T PF03778_consen 2 RFWRENHGFTFLA 14 (20)
T ss_pred ccceeecCEEEEe
Confidence 4777777776654
No 352
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=20.06 E-value=74 Score=18.67 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=19.6
Q ss_pred eEEEEeCCHHHHHHHHHHcCCeEEeeccccCCCCCceeEEEEeCCCCCeEEEee
Q 047907 96 HISFQCGNMEAIEKRLKELDVKYIKRTVKDDQSGNAIDQMFFDDPDGFMIEICN 149 (153)
Q Consensus 96 hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~DPdG~~iel~~ 149 (153)
+..|.|+|.+.+ .+|++.+-+ +.||||+++.++-
T Consensus 46 ~a~FfV~D~~tA-~aLk~vsrk-------------------I~~~dg~Ki~I~V 79 (88)
T PF09162_consen 46 RAQFFVEDASTA-SALKDVSRK-------------------ICDEDGFKISIFV 79 (88)
T ss_dssp EEEEEESSHHHH-HHHHTTTTT-------------------EEBTTSBEE--EE
T ss_pred EEEEEeCCHHHH-HHHHHCCCc-------------------eECCCCCEEEEEE
Confidence 488999995543 445444332 5667777776653
Done!