Query 047908
Match_columns 94
No_of_seqs 125 out of 1018
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_L 50S ribosomal protein L 99.8 8.7E-20 3E-24 125.6 3.1 68 1-78 75-142 (143)
2 1vq8_L 50S ribosomal protein L 99.8 4.1E-19 1.4E-23 124.5 4.8 74 1-80 64-144 (165)
3 3v2d_P 50S ribosomal protein L 99.7 7E-19 2.4E-23 121.9 2.8 67 1-80 82-148 (150)
4 2zkr_l 60S ribosomal protein L 99.7 1.9E-18 6.6E-23 119.0 3.5 73 1-80 72-147 (148)
5 2zjr_I 50S ribosomal protein L 99.7 3E-19 1E-23 124.3 -2.1 70 1-80 74-143 (156)
6 3j21_L 50S ribosomal protein L 99.7 5.7E-17 2E-21 111.9 5.4 65 1-80 75-147 (147)
7 3bbo_N Ribosomal protein L15; 99.6 8.4E-19 2.9E-23 130.2 -7.2 74 1-81 144-221 (257)
8 3j21_P 50S ribosomal protein L 99.6 1.9E-16 6.7E-21 106.0 3.2 64 1-88 46-109 (120)
9 4a17_K L29, RPL27A, 60S riboso 99.5 8.4E-16 2.9E-20 106.3 0.1 73 1-80 74-148 (149)
10 3o58_Y 60S ribosomal protein L 99.5 3E-15 1E-19 103.6 -1.0 66 1-79 72-147 (149)
11 1vq8_O 50S ribosomal protein L 99.5 6.7E-14 2.3E-18 93.1 5.1 57 1-80 43-99 (116)
12 3iz5_O 60S ribosomal protein L 99.4 2.9E-16 1E-20 108.1 -11.8 69 1-79 72-142 (144)
13 2zkr_o 60S ribosomal protein L 99.2 2.7E-12 9.4E-17 91.5 3.4 45 40-88 83-129 (188)
14 3izc_R 60S ribosomal protein R 99.2 5.7E-12 2E-16 89.7 3.8 67 1-87 61-129 (186)
15 3iz5_R 60S ribosomal protein L 99.2 1E-11 3.5E-16 88.6 5.1 45 40-88 83-129 (188)
16 3jyw_O 60S ribosomal protein L 99.2 6.6E-13 2.3E-17 89.0 -1.2 44 40-87 64-109 (121)
17 4a17_N RPL18, 60S ribosomal pr 99.2 8.3E-12 2.9E-16 88.6 2.9 44 40-87 84-129 (181)
18 2cok_A Poly [ADP-ribose] polym 47.5 13 0.00045 23.6 2.5 15 64-78 27-41 (113)
19 1l7b_A DNA ligase; BRCT, autos 38.6 23 0.00078 21.5 2.5 16 63-78 23-38 (92)
20 1ctf_A Ribosomal protein L7/L1 38.3 24 0.00082 21.1 2.5 16 64-79 58-73 (74)
21 2k6g_A Replication factor C su 37.9 23 0.00078 22.2 2.5 15 64-78 50-64 (109)
22 3ec9_A Uncharacterized NTF2-li 33.4 32 0.0011 20.9 2.7 20 74-93 119-140 (140)
23 3fgy_A Uncharacterized NTF2-li 32.5 36 0.0012 20.4 2.8 22 73-94 110-133 (135)
24 2ebu_A Replication factor C su 31.6 29 0.001 21.9 2.3 15 64-78 40-54 (112)
25 2j01_L 50S ribosomal protein L 29.5 38 0.0013 22.2 2.6 15 65-79 110-124 (125)
26 2zjq_5 50S ribosomal protein L 29.3 39 0.0013 22.0 2.6 15 65-79 107-121 (122)
27 1dd3_A 50S ribosomal protein L 29.0 43 0.0015 22.0 2.8 15 65-79 113-127 (128)
28 2ftc_E L12MT, MRP-L12, 39S rib 28.2 41 0.0014 22.3 2.6 15 65-79 122-136 (137)
29 2jo4_A KIA7; peptide, oligomer 27.9 33 0.0011 16.2 1.5 13 64-76 9-21 (26)
30 2jo5_A KIA7F; peptide, oligome 27.8 34 0.0011 16.2 1.5 13 64-76 9-21 (26)
31 2qn6_B Translation initiation 25.8 47 0.0016 20.3 2.4 18 62-79 73-90 (93)
32 4id3_A DNA repair protein REV1 23.2 62 0.0021 18.3 2.5 15 64-78 24-38 (92)
33 3bpd_A Uncharacterized protein 21.8 1.6E+02 0.0054 18.5 4.5 31 50-80 48-79 (100)
34 3pys_P 30S ribosomal protein S 20.4 66 0.0023 19.5 2.3 30 2-33 51-80 (83)
No 1
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=99.77 E-value=8.7e-20 Score=125.59 Aligned_cols=68 Identities=32% Similarity=0.486 Sum_probs=61.5
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVR 78 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~ 78 (94)
+|||++||.+ + .++||+++|+++|+|+.. .++|||||+| +|++||+|++++||++|+++||+|||+|+
T Consensus 75 ~VNL~~L~~~-~------~~~I~~~~L~~~glv~~~-~~~VKVLg~G--el~~~l~V~a~~~SksA~ekIEaAGG~v~ 142 (143)
T 3r8s_L 75 EIRLSDLAKV-E------GGVVDLNTLKAANIIGIQ-IEFAKVILAG--EVTTPVTVRGLRVTKGARAAIEAAGGKIE 142 (143)
T ss_dssp ECCSSSSSCS-S------SSEEEHHHHGGGTSSCTT-CCEEECCCCS--CCCSCCEEESSCCCHHHHHHHHTTTCEEE
T ss_pred EEEHHHhhhc-c------CCeecHHHHHHcCccccC-CCceEEeeCC--cccccEEEEEEecCHHHHHHHHHcCCEEe
Confidence 5899999876 2 258999999999999864 4699999999 99999999999999999999999999987
No 2
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=99.76 E-value=4.1e-19 Score=124.54 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=64.4
Q ss_pred CcchhhHHhHHH----cCCCC--CCC-ccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHc
Q 047908 1 PVGLGKIAYLIN----AGKID--SHE-LITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAA 73 (94)
Q Consensus 1 ~iNL~~L~~~~~----~g~i~--~~~-~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~a 73 (94)
+|||++||.+++ .|+++ .+. +||+++|++.|+|+ .+|||||+| +|++||+|+++.||++|+++||+|
T Consensus 64 ~VNL~~L~~l~~~~~~~g~~~~~~~~~vId~~~L~~~gli~----~~vKVLG~G--~l~k~l~Vka~~fSk~A~ekIeaA 137 (165)
T 1vq8_L 64 TIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDA----DYVKVLGAG--QVRHELTLIADDFSEGAREKVEGA 137 (165)
T ss_dssp EEEHHHHHHTTGGGTTSCCCC-----CEEEGGGTCTTCTTS----SEEEEECCS--CCCSCCEEEESEECHHHHHHHHHT
T ss_pred eEEHHHHHHHHHHhhhccccccCCCCeEECHHHHHHCCccC----CceEEecCC--ccCCCEEEEEEecCHHHHHHHHHc
Confidence 489999999874 56552 232 79999999999983 489999999 999999999999999999999999
Q ss_pred CCEEEEE
Q 047908 74 GGSVRRV 80 (94)
Q Consensus 74 GG~v~~~ 80 (94)
||+|+++
T Consensus 138 GG~v~~i 144 (165)
T 1vq8_L 138 GGSVELT 144 (165)
T ss_dssp TCEEEEC
T ss_pred CCEEEEe
Confidence 9999986
No 3
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=99.73 E-value=7e-19 Score=121.92 Aligned_cols=67 Identities=27% Similarity=0.409 Sum_probs=61.0
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRRV 80 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~~ 80 (94)
+|||++||. ++ | +||+++|+++|+|+. +++|||||+| +++ |++|++++||++|+++||+|||+|+++
T Consensus 82 ~VNL~~L~~-~~-G------~I~~~~L~~~glv~~--~~~VKvLg~G--~l~-~v~V~a~~~S~~A~~kIe~aGG~v~~~ 148 (150)
T 3v2d_P 82 GVNLKDLAR-FE-G------EVTPELLVRAGLLKK--GYRLKILGEG--EAK-PLKVVAHAFSKSALEKLKAAGGEPVLL 148 (150)
T ss_dssp EEEHHHHTT-CC-S------EECHHHHHTTTSSCT--TCEEEEECSS--CCC-SCEECBSCBCHHHHHHHHHTTCBCCBC
T ss_pred EEEHHHHhh-cC-C------cccHHHHHHCCCccc--ccceEEEecC--Ccc-cEEEEEEEcCHHHHHHHHHcCCEEEEe
Confidence 589999998 65 5 799999999999986 3599999999 999 999999999999999999999998753
No 4
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.72 E-value=1.9e-18 Score=119.04 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=59.6
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHH-H-HHcCCccCCCCCceEEEcCCcccccc-cEEEEEEecCHHHHHHHHHcCCEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKT-L-KDAGAIGKQIEDGVRLMGRGAEKIKW-PIHLEVSRVTVRAKAAVEAAGGSV 77 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~-L-~~~g~i~~~~~~~vKlLg~G~~~l~~-~i~I~~~~~S~~A~~~Ie~aGG~v 77 (94)
+|||++||.+++++. .+++.. | .++++|+.....++||||+| +|++ |++|+++.||++|+++||+|||+|
T Consensus 72 ~VNl~~L~~l~~~~~-----~~~~~~~l~~~~~vI~~~~~~~vKVLG~G--el~k~~l~Vka~~fSk~A~ekIeaAGG~v 144 (148)
T 2zkr_l 72 TVNLDKPWTLVSEQT-----RVNAAKNKTGVAPIIDVVRSGYYKVLGKG--KLPKQPVIVKAKFFSRRAEEKIKSVGGAC 144 (148)
T ss_dssp EEETHHHHHHTTTTT-----SSCTTTTEEEHHHHSTTCSSSCCEEECCS--CCCSSCCEEEESEECHHHHHHHHHTTCEE
T ss_pred eEEHHHHHhhhhcCc-----EEehhhhccccCCeEeccccCceEEecCC--ccccCCEEEEEEecCHHHHHHHHHcCCEE
Confidence 489999999877664 355543 2 47788864323479999999 9998 999999999999999999999999
Q ss_pred EEE
Q 047908 78 RRV 80 (94)
Q Consensus 78 ~~~ 80 (94)
+++
T Consensus 145 ~~~ 147 (148)
T 2zkr_l 145 VLV 147 (148)
T ss_dssp EEC
T ss_pred Eec
Confidence 864
No 5
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=99.71 E-value=3e-19 Score=124.33 Aligned_cols=70 Identities=27% Similarity=0.355 Sum_probs=62.2
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRRV 80 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~~ 80 (94)
+|||++||.+++ + . ||+++|+++|+|+.. .++|||||+| +|++||+|+++.||++|+++||+|||+|+++
T Consensus 74 ~VNL~~L~~l~~-~-----~-i~~~~L~~~gli~~~-~~~vKVLG~G--~l~~~l~Vka~~fSk~A~ekIEaAGG~v~~i 143 (156)
T 2zjr_I 74 VVKLSQLQDLED-T-----T-FDRDTLEAYRLVRRK-NRPVKLLASG--EISRAVTVHVDAASAAAIKAVEAAGGRVVLP 143 (156)
T ss_dssp EECHHHHTTSCC-C-----C-CCTTTTHHHHHCCCC-SSCCEECCCC--CCCCCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred eechhHHHhhhc-C-----C-cCHHHHHhCCcEecc-ccceEEeeCC--ccCcCeEEEEEecCHHHHHHHHHcCCEEEEe
Confidence 489999998643 2 2 899999999999864 4689999999 9999999999999999999999999999864
No 6
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.67 E-value=5.7e-17 Score=111.87 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=53.8
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCC--------CceEEEcCCcccccccEEEEEEecCHHHHHHHHH
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIE--------DGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEA 72 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~--------~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~ 72 (94)
+|||++||++++ .|.+.|+++.... .++||||+| +|++|++|+++.||++|+++||+
T Consensus 75 ~VNL~~L~~l~~-------------~L~~~gli~~~~~~~vid~~~~GvKVLG~G--~l~~~v~Vka~~fS~~A~ekIea 139 (147)
T 3j21_L 75 VVNLKFIDEHLD-------------ELMQMGIAYEEGGKIIVDVTQFADKVLGTG--KLTRPLVIKARAFSPKAEEKIKA 139 (147)
T ss_dssp EEEHHHHHHTTT-------------TTTTSCCCSSSSBSEEEEGGGGCCEEECCS--CCSSCEEEEESEECHHHHHHHHH
T ss_pred EEEHHHHHHHHH-------------HHHHcCcccccCCcceecccccCcEEecCC--ccCcCEEEEEEecCHHHHHHHHH
Confidence 489999999864 2566777754211 238999999 99999999999999999999999
Q ss_pred cCCEEEEE
Q 047908 73 AGGSVRRV 80 (94)
Q Consensus 73 aGG~v~~~ 80 (94)
|||+|+++
T Consensus 140 aGG~v~~~ 147 (147)
T 3j21_L 140 AGGEAVLV 147 (147)
T ss_dssp TTCEEEEC
T ss_pred cCCEEEeC
Confidence 99999863
No 7
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.63 E-value=8.4e-19 Score=130.20 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=65.0
Q ss_pred CcchhhHHhH-HHcCCCCCCCccCHHHHHHcCCccCC---CCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCE
Q 047908 1 PVGLGKIAYL-INAGKIDSHELITMKTLKDAGAIGKQ---IEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGS 76 (94)
Q Consensus 1 ~iNL~~L~~~-~~~g~i~~~~~I~~~~L~~~g~i~~~---~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~ 76 (94)
+|||++||.+ ++++ ++||+++|++.|+|+.. ..+++||||+| +|+++|+|++++||++|+++||+|||+
T Consensus 144 ~VNL~kL~~lr~~eg-----~~Idle~L~~aGlI~~~gr~~~~~VKVLG~G--eLtkkLtVkA~~fSksA~eKIEaAGG~ 216 (257)
T 3bbo_N 144 NVNLTDIENAGFQDG-----EEVSLETLKAKRVINPSGRERKLPLKILADG--ELSKKLTIKAGAFSTSAKEKLEYAGCS 216 (257)
T ss_dssp CSCSSCCSCSSTTTT-----TTTCCSSCCSSSCSSSSCCCCSCCCCCCCSS--CCCSSCCCCSSCCTGGGTTSSTTTTCC
T ss_pred eEeHHHHhhcccCCC-----CEeCHHHHHhCCcccccccccCccEEEEeCC--ccCCCeEEEEEecCHHHHHHHHHcCCE
Confidence 5899999975 5544 48999999999999752 23589999999 999999999999999999999999999
Q ss_pred EEEEE
Q 047908 77 VRRVH 81 (94)
Q Consensus 77 v~~~~ 81 (94)
|+++.
T Consensus 217 v~~i~ 221 (257)
T 3bbo_N 217 LIVLP 221 (257)
T ss_dssp EECCC
T ss_pred EEEee
Confidence 99873
No 8
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.61 E-value=1.9e-16 Score=106.01 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=53.4
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRRV 80 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~~ 80 (94)
+|||++|++++++|+ +|+. ++||||+| ++++|++|++++||++|+++||+|||+|++
T Consensus 46 ~VnL~~L~~~~~~g~-----~i~~---------------~vKVLg~G--~l~~kl~V~a~~fS~~A~ekIe~AGG~v~~- 102 (120)
T 3j21_P 46 EVNVSKINRYANDGE-----MIVV---------------PGSVLGAG--KLEKKVIVAAWKFSETARRKIIEAGGEAIT- 102 (120)
T ss_dssp EEEHHHHTTSSCTTC-----EEEE---------------EEEEECSS--CCCSCCEEEEEEECHHHHHHHTTTSSCEEE-
T ss_pred eEEHHHHHHHHhcCC-----EEEE---------------EEEEcCCC--eecCCEEEEEeccCHHHHHHHHHcCCEEEE-
Confidence 488999988875553 4431 58999999 999999999999999999999999999874
Q ss_pred EecHhhhh
Q 047908 81 HYNKLGLR 88 (94)
Q Consensus 81 ~~~~~~l~ 88 (94)
++.++++
T Consensus 103 -~~qL~~~ 109 (120)
T 3j21_P 103 -IEELIER 109 (120)
T ss_dssp -STTHHHH
T ss_pred -eHHHHHH
Confidence 6776665
No 9
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=99.52 E-value=8.4e-16 Score=106.25 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=52.6
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHH-HcCCccCCCCCceEEEcCCcccc-cccEEEEEEecCHHHHHHHHHcCCEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLK-DAGAIGKQIEDGVRLMGRGAEKI-KWPIHLEVSRVTVRAKAAVEAAGGSVR 78 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~-~~g~i~~~~~~~vKlLg~G~~~l-~~~i~I~~~~~S~~A~~~Ie~aGG~v~ 78 (94)
+|||++||++++++. .++...+. +..+|.-....++||||+| +| ++|++|+++.||++|+++||+|||+|+
T Consensus 74 ~VNLdkL~~l~~~~~-----~~~~~~~~~~~~vId~~~~g~~KvLG~G--~l~~~~v~v~a~~fS~~A~~kIe~aGG~~~ 146 (149)
T 4a17_K 74 VVNIDKLWSLVSDAT-----RQKYAEDKKKVPVIDVTKAGFFKVLGKG--RLPNQPVVVKAKYFSKTAERRIVAVGGACV 146 (149)
T ss_dssp EEEGGGHHHHSCHHH-----HHHHHHCCSSCCEEEHHHHTCCEEECCS--CCCSSCCEEEESEECHHHHHHHHHTTCEEE
T ss_pred EEEHHHHHHHhhhhc-----chhhhhhcCCceEEEeccCCeEEEecCC--ccCCCCEEEEEeecCHHHHHHHHHcCCEEE
Confidence 489999999976442 22222211 1113320001368999999 99 899999999999999999999999998
Q ss_pred EE
Q 047908 79 RV 80 (94)
Q Consensus 79 ~~ 80 (94)
++
T Consensus 147 ~~ 148 (149)
T 4a17_K 147 LT 148 (149)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 10
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=99.46 E-value=3e-15 Score=103.56 Aligned_cols=66 Identities=29% Similarity=0.404 Sum_probs=51.4
Q ss_pred CcchhhHHhHHHcCCCCC-------CC--ccCHHHHHHcCCccCCCCCceEEEcCCcccc-cccEEEEEEecCHHHHHHH
Q 047908 1 PVGLGKIAYLINAGKIDS-------HE--LITMKTLKDAGAIGKQIEDGVRLMGRGAEKI-KWPIHLEVSRVTVRAKAAV 70 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~-------~~--~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l-~~~i~I~~~~~S~~A~~~I 70 (94)
+|||++||+++++..-.. +. +||+. +. .++||||+| +| ++|++|++..||++|+++|
T Consensus 72 ~INldkL~~lv~~~~~~~~a~~~~~~~~~vID~~---~~--------g~vKVLG~G--~l~~~~v~Vka~~fS~~A~ekI 138 (149)
T 3o58_Y 72 VLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTL---AA--------GYGKILGKG--RIPNVPVIVKARFVSKLAEEKI 138 (149)
T ss_dssp STTTTHHHHCSSCCSCSSCTTSSTTSSCCBCCCS---SS--------CSCCCCCCC--CCCSCCEEECSSCCTTTTHHHH
T ss_pred eEEHHHHHHHhHHHHhhhhhhhccCCCCcEEEEe---cc--------cceEEEcCC--ccCCCCEEEEEeecCHHHHHHH
Confidence 589999999987653111 00 23221 12 368999999 99 8999999999999999999
Q ss_pred HHcCCEEEE
Q 047908 71 EAAGGSVRR 79 (94)
Q Consensus 71 e~aGG~v~~ 79 (94)
|+|||+|++
T Consensus 139 e~aGG~~~~ 147 (149)
T 3o58_Y 139 RAAGGVVEL 147 (149)
T ss_dssp GGGSCEEEC
T ss_pred HHcCCEEEE
Confidence 999999986
No 11
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=99.45 E-value=6.7e-14 Score=93.13 Aligned_cols=57 Identities=14% Similarity=0.331 Sum_probs=48.6
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRRV 80 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~~ 80 (94)
+|||++|++++++|. +| ++ ++||||+| ++++|++|++++||++|+++||+| |+|+++
T Consensus 43 ~VnL~~L~~~~~~g~-----~i---------lv------~vKVLg~G--~l~k~l~V~a~~fSk~A~ekIeaA-G~v~~~ 99 (116)
T 1vq8_O 43 EVNLGRIERYAQEDE-----TV---------VV------PGKVLGSG--VLQKDVTVAAVDFSGTAETKIDQV-GEAVSL 99 (116)
T ss_dssp EEEHHHHHHHCCTTS-----EE---------EE------EEEEECCS--CCCSCCEEEEEEECHHHHHHHHHH-SEEEEH
T ss_pred eEeHHHHHHHccCCC-----EE---------EE------EEEEeeCC--eecCCEEEEEEecCHHHHHHHHHc-CeEEEh
Confidence 489999988776553 33 22 68999999 999999999999999999999999 999864
No 12
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=99.35 E-value=2.9e-16 Score=108.09 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=51.6
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccc--cccEEEEEEecCHHHHHHHHHcCCEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKI--KWPIHLEVSRVTVRAKAAVEAAGGSVR 78 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l--~~~i~I~~~~~S~~A~~~Ie~aGG~v~ 78 (94)
+|||++||++++++.++......+-+|.+.| ++||||+| +| ++|++|+++.||++|+++||+|||+|+
T Consensus 72 ~VNl~kL~~lv~~~~a~~~~~~~vIDl~~~G--------~~KvLG~G--~l~~~~~v~Vka~~fS~~A~ekIe~aGG~v~ 141 (144)
T 3iz5_O 72 AVNVERLWSMVPAEAGAGAGKAPVIDVTQFG--------YTKVLGKG--MLPPERPIVVKAKLISKVAEKKIKAAGGAVL 141 (144)
T ss_dssp EEGGGTSTTCTTSSEEEEECCSCCCSCCEEE--------ESEECHHH--HSTTCTTCCCEECGGGSSCSCCCSSCCCCCC
T ss_pred eEEHHHHHHHhHHhhhccCCCceEEEeeccC--------cEEEeCCC--ccCCccCEEEEEeecCHHHHHHHHHcCCEEE
Confidence 4899999999876542111111111222223 58999999 99 899999999999999999999999987
Q ss_pred E
Q 047908 79 R 79 (94)
Q Consensus 79 ~ 79 (94)
+
T Consensus 142 ~ 142 (144)
T 3iz5_O 142 L 142 (144)
T ss_dssp C
T ss_pred E
Confidence 5
No 13
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.25 E-value=2.7e-12 Score=91.55 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=39.4
Q ss_pred ceEEEcCCcccccc--cEEEEEEecCHHHHHHHHHcCCEEEEEEecHhhhh
Q 047908 40 GVRLMGRGAEKIKW--PIHLEVSRVTVRAKAAVEAAGGSVRRVHYNKLGLR 88 (94)
Q Consensus 40 ~vKlLg~G~~~l~~--~i~I~~~~~S~~A~~~Ie~aGG~v~~~~~~~~~l~ 88 (94)
.+||||+| +|++ +++|++++||++|+++||+|||+|+++ +.+.++
T Consensus 83 ~~KVLg~G--eL~kvpkLtV~A~~fSksArekIEaAGG~v~~i--dqla~~ 129 (188)
T 2zkr_o 83 VGTVTDDV--RILEVPKLKVCALRVSSRARSRILKAGGKILTF--DQLALE 129 (188)
T ss_dssp EEEEECSS--CCCCCSSCCEEEEEECHHHHHHHHHHSSCEEEH--HHHHHH
T ss_pred ecEEECCc--eecccCCeEEEEeecCHHHHHHHHHcCCEEEEh--HHHHHH
Confidence 57999999 9999 999999999999999999999999854 444443
No 14
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=99.22 E-value=5.7e-12 Score=89.73 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=51.0
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCccccc--ccEEEEEEecCHHHHHHHHHcCCEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIK--WPIHLEVSRVTVRAKAAVEAAGGSVR 78 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~--~~i~I~~~~~S~~A~~~Ie~aGG~v~ 78 (94)
+|||++|+++++++..+ ++++ + .++||||+| +|+ .+++|.+++||++|+++||+|||+|+
T Consensus 61 ~VnLsrI~r~~k~~g~~-g~~v---------V------v~gKVLg~G--~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~ 122 (186)
T 3izc_R 61 PVSVSRIARALKQEGAA-NKTV---------V------VVGTVTDDA--RIFEFPKTTVAALRFTAGARAKIVKAGGECI 122 (186)
T ss_dssp EEEHHHHHHHTTTTSSS-SCEE---------E------ESSEEECCC--CSSCCCCEEEEESCCCHHHHHHHHHHSEECC
T ss_pred cccHHHHHHHhhccCCC-CCEE---------E------EEeEEecCc--eEcccCCEEEEEEecCHHHHHHHHHcCCEEE
Confidence 58899998887654211 2223 1 157999999 998 79999999999999999999999976
Q ss_pred EEEecHhhh
Q 047908 79 RVHYNKLGL 87 (94)
Q Consensus 79 ~~~~~~~~l 87 (94)
+ ++.+.+
T Consensus 123 ~--~dqLa~ 129 (186)
T 3izc_R 123 T--LDQLAV 129 (186)
T ss_dssp C--SHHHHH
T ss_pred E--HHHHHH
Confidence 4 344444
No 15
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=99.22 E-value=1e-11 Score=88.56 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=38.7
Q ss_pred ceEEEcCCccccc--ccEEEEEEecCHHHHHHHHHcCCEEEEEEecHhhhh
Q 047908 40 GVRLMGRGAEKIK--WPIHLEVSRVTVRAKAAVEAAGGSVRRVHYNKLGLR 88 (94)
Q Consensus 40 ~vKlLg~G~~~l~--~~i~I~~~~~S~~A~~~Ie~aGG~v~~~~~~~~~l~ 88 (94)
.+||||+| +|+ .+++|.+++||++|+++||+|||+|++ ++.+.++
T Consensus 83 ~gKVLg~G--~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~--~dqLa~~ 129 (188)
T 3iz5_R 83 VGTITDDM--RIQEVPAMKVTALRFTETARARIINAGGECLT--FDQLALR 129 (188)
T ss_dssp EEEEECCC--CSSCCSSEEEEEEECCHHHHHHHHTTSEEEEE--HHHHHHH
T ss_pred EEEEcCCc--eEcccCCEEEEEeecCHHHHHHHHHcCCEEEE--HHHHHHh
Confidence 57999999 998 789999999999999999999999864 4444443
No 16
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=99.21 E-value=6.6e-13 Score=89.02 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=37.9
Q ss_pred ceEEEcCCccccc--ccEEEEEEecCHHHHHHHHHcCCEEEEEEecHhhh
Q 047908 40 GVRLMGRGAEKIK--WPIHLEVSRVTVRAKAAVEAAGGSVRRVHYNKLGL 87 (94)
Q Consensus 40 ~vKlLg~G~~~l~--~~i~I~~~~~S~~A~~~Ie~aGG~v~~~~~~~~~l 87 (94)
++||||+| +++ .+++|.+++||++|+++||+|||+|++ ++.+.+
T Consensus 64 ~~KVlg~G--~l~~~~kl~V~a~~fS~~A~~kIe~AGG~~~~--~dql~~ 109 (121)
T 3jyw_O 64 VGTVTDDA--RIFEFPKTTVAALRFTAGARAKIVKAGGECIT--LDQLAV 109 (121)
T ss_dssp SSCBCCCS--CCCSSSCCCEECSSBCTTTTTHHHHHTCCBCC--STTHHH
T ss_pred EEEEcCCc--eEcccCCEEEEEEecCHHHHHHHHHcCCEEEE--HHHHHH
Confidence 56999999 998 899999999999999999999999763 344443
No 17
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=99.18 E-value=8.3e-12 Score=88.56 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=38.2
Q ss_pred ceEEEcCCccccc--ccEEEEEEecCHHHHHHHHHcCCEEEEEEecHhhh
Q 047908 40 GVRLMGRGAEKIK--WPIHLEVSRVTVRAKAAVEAAGGSVRRVHYNKLGL 87 (94)
Q Consensus 40 ~vKlLg~G~~~l~--~~i~I~~~~~S~~A~~~Ie~aGG~v~~~~~~~~~l 87 (94)
.+||||+| +|+ .+++|.+++||++|+++||+|||+|++ ++.+.+
T Consensus 84 ~gKVLg~G--~l~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~--~dqLa~ 129 (181)
T 4a17_N 84 TSTVTNDE--RLLTVPKLTVCALKFTETARKRILAAGGKCLT--FDQLAL 129 (181)
T ss_dssp SSEEECCT--TCCSCCCCEEECSEECHHHHHHHHTTTCEEEC--HHHHHH
T ss_pred EEEEcCCc--eEcccCCEEEEEeecCHHHHHHHHHcCCEEEE--hHHHHH
Confidence 56999999 998 789999999999999999999999864 444444
No 18
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=47.48 E-value=13 Score=23.60 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCEEE
Q 047908 64 VRAKAAVEAAGGSVR 78 (94)
Q Consensus 64 ~~A~~~Ie~aGG~v~ 78 (94)
..|++.||++||+|.
T Consensus 27 ~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 27 DEVKAMIEKLGGKLT 41 (113)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCEEc
Confidence 689999999999975
No 19
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=38.58 E-value=23 Score=21.49 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=13.7
Q ss_pred CHHHHHHHHHcCCEEE
Q 047908 63 TVRAKAAVEAAGGSVR 78 (94)
Q Consensus 63 S~~A~~~Ie~aGG~v~ 78 (94)
-..+++.|+++||+|.
T Consensus 23 R~e~~~~i~~~Gg~v~ 38 (92)
T 1l7b_A 23 REEVKALLRRLGAKVT 38 (92)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCEEe
Confidence 3678999999999975
No 20
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=38.26 E-value=24 Score=21.15 Aligned_cols=16 Identities=38% Similarity=0.385 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCEEEE
Q 047908 64 VRAKAAVEAAGGSVRR 79 (94)
Q Consensus 64 ~~A~~~Ie~aGG~v~~ 79 (94)
+..++++|++|++|++
T Consensus 58 e~ik~~Le~aGA~Vel 73 (74)
T 1ctf_A 58 EALKKALEEAGAEVEV 73 (74)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCEEEe
Confidence 3467788999999875
No 21
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=37.94 E-value=23 Score=22.19 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCEEE
Q 047908 64 VRAKAAVEAAGGSVR 78 (94)
Q Consensus 64 ~~A~~~Ie~aGG~v~ 78 (94)
..+++.|+++||+|.
T Consensus 50 ~e~~~~i~~~Gg~v~ 64 (109)
T 2k6g_A 50 DEAKSLIERYGGKVT 64 (109)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCEee
Confidence 788999999999976
No 22
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=33.44 E-value=32 Score=20.85 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=16.3
Q ss_pred CCEEEEE--EecHhhhhhhcCC
Q 047908 74 GGSVRRV--HYNKLGLRALLKP 93 (94)
Q Consensus 74 GG~v~~~--~~~~~~l~~~~~p 93 (94)
+|+|... |||...|.+.+.|
T Consensus 119 dGkI~~~~~y~D~~~~~~a~~p 140 (140)
T 3ec9_A 119 AGKIVHFEQFTDTLLVAQAMQP 140 (140)
T ss_dssp TTEEEEEEEEEBHHHHHHHHCC
T ss_pred CCEEEEEEEEEcHHHHHHhhCc
Confidence 6777654 9999999998887
No 23
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=32.52 E-value=36 Score=20.37 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=17.4
Q ss_pred cCCEEEEE--EecHhhhhhhcCCC
Q 047908 73 AGGSVRRV--HYNKLGLRALLKPE 94 (94)
Q Consensus 73 aGG~v~~~--~~~~~~l~~~~~p~ 94 (94)
.+|+|... |||...|.+.+.|+
T Consensus 110 ~dGkI~~~~~y~D~~~l~~a~~~~ 133 (135)
T 3fgy_A 110 RKSKVTSIREYIDTLALARATNFN 133 (135)
T ss_dssp ETTEEEEEEEECBHHHHHHHTTTC
T ss_pred ECCEEEEEEEEecHHHHHHHhcCC
Confidence 35677654 99999999999885
No 24
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.63 E-value=29 Score=21.90 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCEEE
Q 047908 64 VRAKAAVEAAGGSVR 78 (94)
Q Consensus 64 ~~A~~~Ie~aGG~v~ 78 (94)
..|++.|+++||+|.
T Consensus 40 ~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 40 DEAKSLIERYGGKVT 54 (112)
T ss_dssp HHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHcCCEEe
Confidence 678999999999975
No 25
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=29.47 E-value=38 Score=22.16 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCEEEE
Q 047908 65 RAKAAVEAAGGSVRR 79 (94)
Q Consensus 65 ~A~~~Ie~aGG~v~~ 79 (94)
..++++|.+|++|++
T Consensus 110 ~iK~kLe~aGA~Vel 124 (125)
T 2j01_L 110 EIKKKLEAVGAVVEL 124 (125)
T ss_pred HHHHHHHHcCCEEEe
Confidence 345566777777664
No 26
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=29.26 E-value=39 Score=22.05 Aligned_cols=15 Identities=47% Similarity=0.581 Sum_probs=9.7
Q ss_pred HHHHHHHHcCCEEEE
Q 047908 65 RAKAAVEAAGGSVRR 79 (94)
Q Consensus 65 ~A~~~Ie~aGG~v~~ 79 (94)
..++++|.+|++|++
T Consensus 107 ~iK~kLe~aGA~Vel 121 (122)
T 2zjq_5 107 KMKAQLEAAGARVEL 121 (122)
T ss_pred HHHHHHHHcCCEEEe
Confidence 345666777777764
No 27
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=29.02 E-value=43 Score=22.02 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=12.4
Q ss_pred HHHHHHHHcCCEEEE
Q 047908 65 RAKAAVEAAGGSVRR 79 (94)
Q Consensus 65 ~A~~~Ie~aGG~v~~ 79 (94)
..++++|.+|++|++
T Consensus 113 ~iK~kLe~aGA~Vel 127 (128)
T 1dd3_A 113 EIKKKLEEAGAEVEL 127 (128)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCEEEe
Confidence 467788999999875
No 28
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=28.24 E-value=41 Score=22.31 Aligned_cols=15 Identities=53% Similarity=0.705 Sum_probs=11.2
Q ss_pred HHHHHHHHcCCEEEE
Q 047908 65 RAKAAVEAAGGSVRR 79 (94)
Q Consensus 65 ~A~~~Ie~aGG~v~~ 79 (94)
..++++|.+|++|++
T Consensus 122 ~iK~kLe~aGA~Vel 136 (137)
T 2ftc_E 122 KIKAALEAVGGTVVL 136 (137)
T ss_pred HHHHHHHHcCCEEEe
Confidence 456778888888864
No 29
>2jo4_A KIA7; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=27.89 E-value=33 Score=16.20 Aligned_cols=13 Identities=46% Similarity=0.631 Sum_probs=9.9
Q ss_pred HHHHHHHHHcCCE
Q 047908 64 VRAKAAVEAAGGS 76 (94)
Q Consensus 64 ~~A~~~Ie~aGG~ 76 (94)
-.|+.+|-++||-
T Consensus 9 ikaiaaiikaggy 21 (26)
T 2jo4_A 9 IKAIAAIIKAGGY 21 (26)
T ss_pred HHHHHHHHHcCCc
Confidence 3567788889985
No 30
>2jo5_A KIA7F; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=27.77 E-value=34 Score=16.20 Aligned_cols=13 Identities=46% Similarity=0.608 Sum_probs=9.7
Q ss_pred HHHHHHHHHcCCE
Q 047908 64 VRAKAAVEAAGGS 76 (94)
Q Consensus 64 ~~A~~~Ie~aGG~ 76 (94)
-.|+.+|-++||-
T Consensus 9 ikaiaaiikaggf 21 (26)
T 2jo5_A 9 IKAIAAIIKAGGF 21 (26)
T ss_pred HHHHHHHHHcCCc
Confidence 3567788889984
No 31
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=25.85 E-value=47 Score=20.33 Aligned_cols=18 Identities=0% Similarity=-0.114 Sum_probs=14.2
Q ss_pred cCHHHHHHHHHcCCEEEE
Q 047908 62 VTVRAKAAVEAAGGSVRR 79 (94)
Q Consensus 62 ~S~~A~~~Ie~aGG~v~~ 79 (94)
+.+.+++.|++.||++..
T Consensus 73 ai~~i~~~i~~~gG~~~v 90 (93)
T 2qn6_B 73 IISNLIKIGKEENVDISV 90 (93)
T ss_dssp HHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHhCCEEEE
Confidence 445588899999999764
No 32
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=23.15 E-value=62 Score=18.32 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCEEE
Q 047908 64 VRAKAAVEAAGGSVR 78 (94)
Q Consensus 64 ~~A~~~Ie~aGG~v~ 78 (94)
...++.|++.||++.
T Consensus 24 ~~l~~~i~~~GG~~~ 38 (92)
T 4id3_A 24 LQLHEMIVLHGGKFL 38 (92)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCEEE
Confidence 568899999999975
No 33
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=21.77 E-value=1.6e+02 Score=18.52 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=24.4
Q ss_pred cccccEEEEEEecCH-HHHHHHHHcCCEEEEE
Q 047908 50 KIKWPIHLEVSRVTV-RAKAAVEAAGGSVRRV 80 (94)
Q Consensus 50 ~l~~~i~I~~~~~S~-~A~~~Ie~aGG~v~~~ 80 (94)
..+-+++|+...+.- .-+++||..||.+-.+
T Consensus 48 Te~lkItIEG~dIdfd~I~~~IE~~GgvIHSI 79 (100)
T 3bpd_A 48 TENIKITILGNNLDYEQIKGVIEDMGGVIHSV 79 (100)
T ss_dssp EEEEEEEEEEEEECHHHHHHHHHTTTCEEEEE
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence 567899999988875 4568899999987543
No 34
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=20.38 E-value=66 Score=19.45 Aligned_cols=30 Identities=20% Similarity=0.467 Sum_probs=18.1
Q ss_pred cchhhHHhHHHcCCCCCCCccCHHHHHHcCCc
Q 047908 2 VGLGKIAYLINAGKIDSHELITMKTLKDAGAI 33 (94)
Q Consensus 2 iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i 33 (94)
+|.++++.|+..|. .++++| ..-|..+|++
T Consensus 51 l~~eri~~Wl~~GA-qptdtV-~~ll~~~g~~ 80 (83)
T 3pys_P 51 VDVERARYWLSVGA-QPTDTA-RRLLRQAGVF 80 (83)
T ss_dssp CCHHHHHHHHHTCC-CBCSTT-GGGTGGGCSS
T ss_pred EchHHHHHHHHCCC-cCCHHH-HHHHHHcCcc
Confidence 68889999998884 334433 1233344543
Done!