Query 047908
Match_columns 94
No_of_seqs 125 out of 1018
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 07:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047908.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047908hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqol1 c.12.1.1 (L:1-150) Rib 99.7 7.6E-18 5.5E-22 113.4 4.9 77 1-80 63-143 (150)
2 d2zjri1 c.12.1.1 (I:4-144) Rib 99.7 1.1E-18 8E-23 117.5 -2.1 70 1-80 71-140 (141)
3 d2j01p1 c.12.1.1 (P:5-150) Rib 99.6 6.1E-17 4.4E-21 109.2 -0.6 66 2-80 79-144 (146)
4 d2gycj1 c.12.1.1 (J:4-143) Rib 99.5 1.4E-17 1E-21 111.5 -6.8 68 1-78 73-140 (140)
5 d1vqoo1 c.12.1.1 (O:1-115) Rib 99.2 8.3E-12 6E-16 81.5 4.6 36 40-77 61-96 (115)
6 d1ctfa_ d.45.1.1 (A:) Ribosoma 54.7 4.4 0.00032 22.6 2.5 16 64-79 52-67 (68)
7 d2zjq51 d.45.1.1 (5:52-122) Ri 53.4 5 0.00036 22.5 2.6 15 65-79 56-70 (71)
8 d1dd3a2 d.45.1.1 (A:58-128) Ri 53.3 5.5 0.0004 22.4 2.8 16 64-79 55-70 (71)
9 d1nyta1 c.2.1.7 (A:102-271) Sh 48.2 12 0.00088 22.8 4.2 46 25-85 7-52 (170)
10 d2qn6b1 d.58.51.1 (B:176-264) 43.6 6.4 0.00046 22.7 2.1 38 41-80 42-89 (89)
11 d1l7ba_ c.15.1.2 (A:) NAD+-dep 35.9 12 0.00091 21.2 2.5 15 64-78 24-38 (92)
12 d1m0sa2 d.58.40.1 (A:127-198) 33.4 28 0.0021 18.9 3.8 27 54-80 5-32 (72)
13 d1l9xa_ c.23.16.1 (A:) gamma-g 31.9 14 0.001 24.6 2.6 23 61-83 25-47 (288)
14 d2glia5 g.37.1.1 (A:229-257) F 30.8 6.8 0.0005 18.3 0.5 13 80-92 13-25 (29)
15 d1q8ka2 d.58.51.1 (A:186-302) 28.4 11 0.00079 22.8 1.4 18 62-79 68-85 (117)
16 d1p77a1 c.2.1.7 (A:102-272) Sh 27.3 55 0.004 19.8 4.8 21 25-47 7-27 (171)
17 d1t15a2 c.15.1.3 (A:1758-1859) 24.4 37 0.0027 18.0 3.2 15 64-78 21-35 (102)
18 d1a9xa4 c.30.1.1 (A:556-676) C 22.1 9.5 0.00069 23.3 0.2 46 40-87 6-51 (121)
19 d1uj4a2 d.58.40.1 (A:132-205) 21.9 39 0.0029 18.3 2.9 27 54-80 4-31 (74)
20 d1scjb_ d.58.3.2 (B:) Subtilis 21.9 32 0.0023 18.3 2.5 19 63-81 17-35 (71)
21 d3ec9a1 d.17.4.10 (A:10-139) U 21.3 34 0.0025 18.7 2.7 20 74-93 109-130 (130)
22 d2zgwa1 b.34.1.1 (A:189-235) B 21.3 17 0.0012 18.4 1.0 10 40-51 3-12 (47)
No 1
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.69 E-value=7.6e-18 Score=113.43 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=61.6
Q ss_pred CcchhhHHhHHHcCCCC----CCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCE
Q 047908 1 PVGLGKIAYLINAGKID----SHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGS 76 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~----~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~ 76 (94)
++|+.+|+.+++....+ ....++..+|.+.+++... ..+|||||+| +|+.||+|+|++||++|+++||+|||+
T Consensus 63 ~inl~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~vKlLG~G--~l~~~l~Ika~~~S~sA~ekIe~aGG~ 139 (150)
T d1vqol1 63 TIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADD-ADYVKVLGAG--QVRHELTLIADDFSEGAREKVEGAGGS 139 (150)
T ss_dssp EEEHHHHHHTTTTCTTSCCCC-----CEEEGGGTCTTCSS-SSEEEEECCS--CCCSCCEEEESEECHHHHHHHHHTTCE
T ss_pred eccHHHHHHHHhhhccccccccccchhhHHHHhhcccccc-ccceEEecCC--ccCcCEEEEEEEcCHHHHHHHHHcCCE
Confidence 37999999988755433 2345666678888887654 4689999999 999999999999999999999999999
Q ss_pred EEEE
Q 047908 77 VRRV 80 (94)
Q Consensus 77 v~~~ 80 (94)
|+++
T Consensus 140 v~l~ 143 (150)
T d1vqol1 140 VELT 143 (150)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9985
No 2
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.66 E-value=1.1e-18 Score=117.49 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=62.0
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRRV 80 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~~ 80 (94)
+|||++|+.+.+ .++|.+.|.+.++|++. .++|||||+| +|+++++|++++||++|+++||+|||+|+++
T Consensus 71 ~inl~~l~~~~~-------~~i~~~~L~~~~li~~~-~~~VKiLg~G--el~~kl~I~v~~~S~sA~~~IE~aGG~V~l~ 140 (141)
T d2zjri1 71 VVKLSQLQDLED-------TTFDRDTLEAYRLVRRK-NRPVKLLASG--EISRAVTVHVDAASAAAIKAVEAAGGRVVLP 140 (141)
T ss_dssp EECHHHHTTSCC-------CCCCTTTTHHHHHCCCC-SSCCEECCCC--CCCCCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred EEEhhhhhcccc-------cchhhhhhhhhceeccC-CCCeEEccCC--cccCCEEEEEEEeCHHHHHHHHHCCCEEEee
Confidence 489999988642 36899999999999875 4699999999 9999999999999999999999999999753
No 3
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}
Probab=99.57 E-value=6.1e-17 Score=109.20 Aligned_cols=66 Identities=24% Similarity=0.354 Sum_probs=56.3
Q ss_pred cchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEEE
Q 047908 2 VGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRRV 80 (94)
Q Consensus 2 iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~~ 80 (94)
|||++|+.+ ...++.++|.++|++++. .+|||||+| ++ +|++|+|++||++|+++||+|||+|+++
T Consensus 79 inl~~l~~~--------~~~~~~~~l~~~glik~~--~~vKvLg~G--e~-k~i~I~v~~~SksA~ekIEkaGG~v~il 144 (146)
T d2j01p1 79 VNLKDLARF--------EGEVTPELLVRAGLLKKG--YRLKILGEG--EA-KPLKVVAHAFSKSALEKLKAAGGEPVLL 144 (146)
T ss_dssp EETTTTTTS--------CSCCCTTTTTTSSSCSSC--CEEEEECSS--CC-CSSCCCCSBCCHHHHHHHHTSCCCCCCC
T ss_pred hhhhhhhhc--------ccchhhHHHHHhCccccC--ceEEEecCC--ce-EeEEEEEEEeCHHHHHHHHHcCCEEEEe
Confidence 677777654 135888899999999764 579999999 88 4999999999999999999999999864
No 4
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}
Probab=99.53 E-value=1.4e-17 Score=111.54 Aligned_cols=68 Identities=32% Similarity=0.486 Sum_probs=58.9
Q ss_pred CcchhhHHhHHHcCCCCCCCccCHHHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEE
Q 047908 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVR 78 (94)
Q Consensus 1 ~iNL~~L~~~~~~g~i~~~~~I~~~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~ 78 (94)
++||.+|+.+ + .+++|+++|.+.|++... ..+|||||.| +|+.||+|++++||++|+++||+|||+|+
T Consensus 73 ~i~l~~l~~~-~------~~~i~~~~L~~~gli~~~-~~~vKiLg~G--el~~ki~i~~~~~S~sA~~~IE~aGG~Ve 140 (140)
T d2gycj1 73 EIRLSDLAKV-E------GGVVDLNTLKAANIIGIQ-IEFAKVILAG--EVTTPVTVRGLRVTKGARAAIEAAGGKIE 140 (140)
T ss_dssp CBCCSSSSSS-S------SCSCCSTTSCTTTTCCCS-SCCCBCCCSC--CCCCCCCCCCSCCCTTTSSSSSSSCCCCC
T ss_pred eEEeeeehhc-c------cccccHHHHhhcCeeecc-ceeeEEeccC--cccCCEEEEEEEeCHHHHHHHHHcCCccC
Confidence 4778888654 2 246899999999999865 4689999999 99999999999999999999999999975
No 5
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.18 E-value=8.3e-12 Score=81.47 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=33.4
Q ss_pred ceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEE
Q 047908 40 GVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSV 77 (94)
Q Consensus 40 ~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v 77 (94)
+.||||+| +++++++|.|++||++|+++||++||.+
T Consensus 61 pgKVLg~G--~l~~k~~V~A~~fS~sA~~kI~~aGg~i 96 (115)
T d1vqoo1 61 PGKVLGSG--VLQKDVTVAAVDFSGTAETKIDQVGEAV 96 (115)
T ss_dssp EEEEECCS--CCCSCCEEEEEEECHHHHHHHHHHSEEE
T ss_pred eeEEeccc--EEcCCEEEEEeecCHHHHHHHHHcCCEE
Confidence 45999999 9999999999999999999999998854
No 6
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=54.69 E-value=4.4 Score=22.59 Aligned_cols=16 Identities=38% Similarity=0.385 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCEEEE
Q 047908 64 VRAKAAVEAAGGSVRR 79 (94)
Q Consensus 64 ~~A~~~Ie~aGG~v~~ 79 (94)
+..++++|++|++|++
T Consensus 52 E~ik~~Le~aGA~Vel 67 (68)
T d1ctfa_ 52 EALKKALEEAGAEVEV 67 (68)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCEEEe
Confidence 3567889999999975
No 7
>d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=53.41 E-value=5 Score=22.54 Aligned_cols=15 Identities=47% Similarity=0.581 Sum_probs=12.3
Q ss_pred HHHHHHHHcCCEEEE
Q 047908 65 RAKAAVEAAGGSVRR 79 (94)
Q Consensus 65 ~A~~~Ie~aGG~v~~ 79 (94)
.+++++|++|++|++
T Consensus 56 ~~k~~Le~aGA~Vel 70 (71)
T d2zjq51 56 KMKAQLEAAGARVEL 70 (71)
T ss_pred HHHHHHHHcCCEEEe
Confidence 456789999999975
No 8
>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=53.30 E-value=5.5 Score=22.37 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCEEEE
Q 047908 64 VRAKAAVEAAGGSVRR 79 (94)
Q Consensus 64 ~~A~~~Ie~aGG~v~~ 79 (94)
+.+++++|++|++|++
T Consensus 55 E~~K~~Le~aGA~V~l 70 (71)
T d1dd3a2 55 EEIKKKLEEAGAEVEL 70 (71)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCEEEe
Confidence 4578899999999875
No 9
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}
Probab=48.22 E-value=12 Score=22.81 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=28.9
Q ss_pred HHHHHcCCccCCCCCceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEEEEecHh
Q 047908 25 KTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRRVHYNKL 85 (94)
Q Consensus 25 ~~L~~~g~i~~~~~~~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~~~~~~~ 85 (94)
..|.+.|+-.+. ..|=|||.| .+++++.-++...|.++.+.-+|+.
T Consensus 7 ~~l~~~~~~~~~--k~vlIlGaG-------------Gaarai~~al~~~g~~i~I~nRt~~ 52 (170)
T d1nyta1 7 SDLERLSFIRPG--LRILLIGAG-------------GASRGVLLPLLSLDCAVTITNRTVS 52 (170)
T ss_dssp HHHHHHTCCCTT--CEEEEECCS-------------HHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred HHHHHcCCCCCC--CEEEEECCc-------------HHHHHHHHHhcccceEEEeccchHH
Confidence 456666753322 258899988 3666777777777776555555543
No 10
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=43.60 E-value=6.4 Score=22.66 Aligned_cols=38 Identities=5% Similarity=0.120 Sum_probs=24.3
Q ss_pred eEEEcCCcccccccEEEEEEe----------cCHHHHHHHHHcCCEEEEE
Q 047908 41 VRLMGRGAEKIKWPIHLEVSR----------VTVRAKAAVEAAGGSVRRV 80 (94)
Q Consensus 41 vKlLg~G~~~l~~~i~I~~~~----------~S~~A~~~Ie~aGG~v~~~ 80 (94)
+++---| --..-+++.+.. +.+.+++.|++.||++.++
T Consensus 42 i~i~~ig--aP~Yri~v~a~D~k~ae~~l~~a~~~i~~~ik~~gg~~~vv 89 (89)
T d2qn6b1 42 IKIYTIG--APRYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDISVV 89 (89)
T ss_dssp EEEEESS--TTEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHTTEEEEEC
T ss_pred EEEEEec--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCEEEeC
Confidence 4444445 344455565543 4566788999999998763
No 11
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]}
Probab=35.89 E-value=12 Score=21.24 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCEEE
Q 047908 64 VRAKAAVEAAGGSVR 78 (94)
Q Consensus 64 ~~A~~~Ie~aGG~v~ 78 (94)
+.+++.|+++||.+.
T Consensus 24 ~e~~~~i~~~Gg~v~ 38 (92)
T d1l7ba_ 24 EEVKALLRRLGAKVT 38 (92)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhCCEEc
Confidence 579999999999976
No 12
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]}
Probab=33.45 E-value=28 Score=18.87 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=19.5
Q ss_pred cEEEEEEecCH-HHHHHHHHcCCEEEEE
Q 047908 54 PIHLEVSRVTV-RAKAAVEAAGGSVRRV 80 (94)
Q Consensus 54 ~i~I~~~~~S~-~A~~~Ie~aGG~v~~~ 80 (94)
|+=||+..|+. ...+++++.||+.++.
T Consensus 5 PlPVEV~pf~~~~v~~~l~~lg~~~~lR 32 (72)
T d1m0sa2 5 PLPVEVIPMARSQVGRKLAALGGSPEYR 32 (72)
T ss_dssp CEEEEECGGGHHHHHHHHHHTTCEEEEC
T ss_pred CEeEEEcHhHHHHHHHHHHHhCCCcccc
Confidence 45567766554 4588999999987653
No 13
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.90 E-value=14 Score=24.60 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.4
Q ss_pred ecCHHHHHHHHHcCCEEEEEEec
Q 047908 61 RVTVRAKAAVEAAGGSVRRVHYN 83 (94)
Q Consensus 61 ~~S~~A~~~Ie~aGG~v~~~~~~ 83 (94)
.+.++-.++||+|||.+..+.++
T Consensus 25 yi~~sYvk~ie~aGa~vvpi~~~ 47 (288)
T d1l9xa_ 25 YIAASYVKYLESAGARVVPVRLD 47 (288)
T ss_dssp EEEHHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHHHHCCCEEEEECCC
Confidence 35677889999999999998775
No 14
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.75 E-value=6.8 Score=18.31 Aligned_cols=13 Identities=23% Similarity=0.135 Sum_probs=11.2
Q ss_pred EEecHhhhhhhcC
Q 047908 80 VHYNKLGLRALLK 92 (94)
Q Consensus 80 ~~~~~~~l~~~~~ 92 (94)
.|-++-|||.|++
T Consensus 13 ~YtdPSSLRKH~k 25 (29)
T d2glia5 13 RYTDPSSLRKHVK 25 (29)
T ss_dssp EESSHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 5889999999975
No 15
>d1q8ka2 d.58.51.1 (A:186-302) eIF-2-alpha, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.42 E-value=11 Score=22.77 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=14.4
Q ss_pred cCHHHHHHHHHcCCEEEE
Q 047908 62 VTVRAKAAVEAAGGSVRR 79 (94)
Q Consensus 62 ~S~~A~~~Ie~aGG~v~~ 79 (94)
+-+.+++.|++.||++.+
T Consensus 68 a~~~i~~~I~~~gG~f~i 85 (117)
T d1q8ka2 68 AMAVIKEKIEEKRGVFNV 85 (117)
T ss_dssp HHHHHHHHHHTTSCEECC
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 446678899999999865
No 16
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}
Probab=27.33 E-value=55 Score=19.76 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=12.3
Q ss_pred HHHHHcCCccCCCCCceEEEcCC
Q 047908 25 KTLKDAGAIGKQIEDGVRLMGRG 47 (94)
Q Consensus 25 ~~L~~~g~i~~~~~~~vKlLg~G 47 (94)
.+|.+.+.-.+. ..+=|+|.|
T Consensus 7 ~~l~~~~~~~~~--k~vlIlGaG 27 (171)
T d1p77a1 7 TDLQRLNWLRPN--QHVLILGAG 27 (171)
T ss_dssp HHHHHTTCCCTT--CEEEEECCS
T ss_pred HHHHHcCCCCCC--CEEEEECCc
Confidence 345555543222 268899988
No 17
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.42 E-value=37 Score=18.00 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCEEE
Q 047908 64 VRAKAAVEAAGGSVR 78 (94)
Q Consensus 64 ~~A~~~Ie~aGG~v~ 78 (94)
..-.+.|+..||++.
T Consensus 21 ~~L~~li~~~GG~v~ 35 (102)
T d1t15a2 21 DQLEWMVQLCGASVV 35 (102)
T ss_dssp HHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHhCCEEe
Confidence 567788999999973
No 18
>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=22.06 E-value=9.5 Score=23.27 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=35.8
Q ss_pred ceEEEcCCcccccccEEEEEEecCHHHHHHHHHcCCEEEEEEecHhhh
Q 047908 40 GVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSVRRVHYNKLGL 87 (94)
Q Consensus 40 ~vKlLg~G~~~l~~~i~I~~~~~S~~A~~~Ie~aGG~v~~~~~~~~~l 87 (94)
.|=|||.| -+.-.-.++.+.++-.|..++.+.|=++..+=+||.+.
T Consensus 6 kvlViGsG--p~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV 51 (121)
T d1a9xa4 6 KIMVLGGG--PNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV 51 (121)
T ss_dssp EEEEECCC--SCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS
T ss_pred EEEEECCC--cCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh
Confidence 67899999 55445556778889999999999998888876666543
No 19
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
Probab=21.91 E-value=39 Score=18.30 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=19.5
Q ss_pred cEEEEEEec-CHHHHHHHHHcCCEEEEE
Q 047908 54 PIHLEVSRV-TVRAKAAVEAAGGSVRRV 80 (94)
Q Consensus 54 ~i~I~~~~~-S~~A~~~Ie~aGG~v~~~ 80 (94)
|+=||+..| .+..++.+++.|+++++.
T Consensus 4 PlPVEV~pf~~~~v~~~l~~lg~~~~lR 31 (74)
T d1uj4a2 4 PVPVEIVPFGYRATLKAIADLGGEPELR 31 (74)
T ss_dssp CEEEEECSTTHHHHHHHHHHTTCCEEEC
T ss_pred CccEEEcHhHHHHHHHHHHHhCCCceEe
Confidence 455666554 466788899999998765
No 20
>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}
Probab=21.87 E-value=32 Score=18.28 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.2
Q ss_pred CHHHHHHHHHcCCEEEEEE
Q 047908 63 TVRAKAAVEAAGGSVRRVH 81 (94)
Q Consensus 63 S~~A~~~Ie~aGG~v~~~~ 81 (94)
...+++.+..+||+|.-.|
T Consensus 17 ~~~~~~~v~~~gg~v~~~~ 35 (71)
T d1scjb_ 17 SAKKKDVISQKGGKVEKQF 35 (71)
T ss_dssp HHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEE
Confidence 3567888999999998765
No 21
>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}
Probab=21.34 E-value=34 Score=18.74 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=15.6
Q ss_pred CCEEEEE--EecHhhhhhhcCC
Q 047908 74 GGSVRRV--HYNKLGLRALLKP 93 (94)
Q Consensus 74 GG~v~~~--~~~~~~l~~~~~p 93 (94)
+|+|+.. |||...+-+.|+|
T Consensus 109 dGkI~~~~~y~D~~~~~~~l~p 130 (130)
T d3ec9a1 109 AGKIVHFEQFTDTLLVAQAMQP 130 (130)
T ss_dssp TTEEEEEEEEEBHHHHHHHHCC
T ss_pred CCEEEEEEEEeCHHHHHHhcCC
Confidence 5666654 9999999888888
No 22
>d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.29 E-value=17 Score=18.37 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=8.4
Q ss_pred ceEEEcCCcccc
Q 047908 40 GVRLMGRGAEKI 51 (94)
Q Consensus 40 ~vKlLg~G~~~l 51 (94)
+||+||+| ++
T Consensus 3 ~vkil~dg--~~ 12 (47)
T d2zgwa1 3 RVKILGDG--SF 12 (47)
T ss_dssp EEEEESSS--EE
T ss_pred cEEEecCC--ce
Confidence 58999999 65
Done!