RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 047908
(94 letters)
>gnl|CDD|235523 PRK05592, rplO, 50S ribosomal protein L15; Reviewed.
Length = 146
Score = 47.8 bits (115), Expect = 2e-08
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 2 VGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSR 61
V LG + K + +T++ LK AG I K I GV+++G G ++ + ++ +
Sbjct: 77 VNLGDLN------KFEEGTEVTLEALKAAGLIRKNI-KGVKVLGNG--ELTKKLTVKAHK 127
Query: 62 VTVRAKAAVEAAGGSV 77
+ AK A+EAAGG V
Sbjct: 128 FSKSAKEAIEAAGGKV 143
>gnl|CDD|233260 TIGR01071, rplO_bact, ribosomal protein L15, bacterial/organelle.
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 145
Score = 46.5 bits (111), Expect = 8e-08
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 8/77 (10%)
Query: 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVS 60
V LGK+A L G E++T++TLK+ G I K+I+ V+++G G K+ P+ ++
Sbjct: 76 EVNLGKLAKLFPNG-----EVVTLETLKEKGLITKKIK-FVKVLGNG--KLTKPLTVKAH 127
Query: 61 RVTVRAKAAVEAAGGSV 77
RV+ AKAA+EAAGGSV
Sbjct: 128 RVSKSAKAAIEAAGGSV 144
>gnl|CDD|223278 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal
structure and biogenesis].
Length = 152
Score = 39.6 bits (93), Expect = 3e-05
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVS 60
V LGK+A L+ G+ +T+ +LK AG I K ++D V+++G G K+ + ++V
Sbjct: 79 VVNLGKLAELLPEGEE-----VTLASLKAAGVIRK-LKDLVKVLGNG--KLTKAVPVKVK 130
Query: 61 -RVTVRAKAAVEAAGGSV 77
+ + A +EAAGG V
Sbjct: 131 AKASKSAIEKIEAAGGKV 148
>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15. This family
includes eukaryotic L18 as well as prokaryotic L15.
Length = 122
Score = 37.2 bits (87), Expect = 2e-04
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 11 INAGKIDSHEL-----ITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVR 65
+N K+D L + +TL G + D V+++G G P+ ++ + +
Sbjct: 54 VNLSKLDRKMLKDGEEVDGETLVVVGTVT----DDVKVLGNGELTK--PLTVKALKFSKS 107
Query: 66 AKAAVEAAGGSV 77
A+ +E AGG V
Sbjct: 108 AREKIEKAGGEV 119
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS was originally
identified in Drosophila using a screen for genes whose
inactivation led to overproliferation of cells. In
tetrapods, there are two LATS isoforms, LATS1 and
LATS2. Inactivation of LATS1 in mice results in the
development of various tumors, including sarcomas and
ovarian cancer. LATS functions as a tumor suppressor
and is implicated in cell cycle regulation.
Length = 376
Score = 26.7 bits (59), Expect = 1.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 1 PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQ 36
+G+G + K+D++ L MKTL+ A + +
Sbjct: 8 TIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRN 43
>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 2.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl
group from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of
other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. LATS functions
as a tumor suppressor and is implicated in cell cycle
regulation. LATS2 is an essential mitotic regulator
responsible for coordinating accurate cytokinesis
completion and governing the stabilization of other
mitotic regulators. It is also critical in the
maintenance of proper chromosome number, genomic
stability, mitotic fidelity, and the integrity of
centrosome duplication. Downregulation of LATS2 is
associated with poor prognosis in acute lymphoblastic
leukemia and breast cancer.
Length = 381
Score = 26.1 bits (57), Expect = 3.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 2 VGLGKIAYLINAGKIDSHELITMKTLK 28
+G+G + A K+D+H L MKTL+
Sbjct: 9 LGIGAFGEVCLACKVDTHALYAMKTLR 35
>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases. Formaldehyde
dehydrogenase (FDH) is a member of the
zinc-dependent/medium chain alcohol dehydrogenase
family. Formaldehyde dehydrogenase (aka ADH3) may be
the ancestral form of alcohol dehydrogenase, which
evolved to detoxify formaldehyde. This CD contains
glutathione dependant FDH, glutathione independent FDH,
and related alcohol dehydrogenases. FDH converts
formaldehyde and NAD(P) to formate and NAD(P)H. The
initial step in this process the spontaneous formation
of a S-(hydroxymethyl)glutathione adduct from
formaldehyde and glutathione, followed by FDH-mediated
oxidation (and detoxification) of the adduct to
S-formylglutathione. Unlike typical FDH, Pseudomonas
putida aldehyde-dismutating FDH (PFDH) is
glutathione-independent. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 347
Score = 26.1 bits (58), Expect = 3.2
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 4 LGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMG-RGAEKIKWPIHL 57
+ ++ LI GKID +LIT + I RL + IK I
Sbjct: 299 MPELLDLIEEGKIDPSKLITHR------FPLDDILKAYRLFDNKPDGCIKVVIRP 347
>gnl|CDD|119340 cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze
either P-C or C-C bond formation/cleavage. Known members
are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate
hydrolase (PPH), carboxyPEP mutase (CPEP mutase),
oxaloacetate hydrolase (OAH), isocitrate lyase (ICL),
and 2-methylisocitrate lyase (MICL). Isocitrate lyase
(ICL) catalyzes the conversion of isocitrate to
succinate and glyoxylate, the first committed step in
the glyoxylate pathway. This carbon-conserving pathway
is present in most prokaryotes, lower eukaryotes and
plants, but has not been observed in vertebrates. PEP
mutase (PEPM) turns phosphoenolpyruvate (PEP) into
phosphonopyruvate (P-pyr), an important intermediate in
the formation of organophosphonates, which function as
antibiotics or play a role in pathogenesis or signaling.
P-pyr can be hydrolyzed by phosphonopyruvate hydrolase
(PPH) to from pyruvate and phosphate. Oxaloacetate
acetylhydrolase (OAH) catalyzes the hydrolytic cleavage
of oxaloacetate to form acetate and oxalate, an
important pathway to produce oxalate in filamentous
fungi. 2-methylisocitrate lyase (MICL) cleaves
2-methylisocitrate to pyruvate and succinate, part of
the methylcitrate cycle for the alpha-oxidation of
propionate.
Length = 243
Score = 25.9 bits (58), Expect = 3.2
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 23 TMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLE--VSRVTVRAKAAVEAA 73
T++ L++AGA G IED V G K + +E V+++ KAA +A
Sbjct: 89 TVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKI----KAARDAR 137
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 25.7 bits (57), Expect = 3.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 58 EVSRVTVRAKAAVEAAGGSVRRVHYN 83
E + V +RA A V A GG+ R YN
Sbjct: 177 EGTLVQIRANAVVMATGGAGRVYRYN 202
>gnl|CDD|234513 TIGR04230, seadorna_VP11, seadornavirus VP11 protein. This protein
family occurs in the seadornavirus virus group, with
designations VP11 in Banna virus, and VP12 in Kadipiro
virus and Liao ning virus. The function has not been
assigned.
Length = 175
Score = 25.7 bits (56), Expect = 3.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 4 LGKIAYLINAGKIDSHELITMKTLKDA 30
L K+ Y ++ + S E++TM L DA
Sbjct: 74 LNKVRYSLDENGVYSQEMVTMPVLSDA 100
>gnl|CDD|235799 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed.
Length = 148
Score = 25.6 bits (57), Expect = 4.0
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 19/79 (24%)
Query: 11 INAGKIDSHELITMKTLKDAGAIGKQIEDG-----------VRLMGRGAEKIKWPIHLEV 59
IN G++D EL LK G + EDG +++G G K+ P+ ++
Sbjct: 73 INVGELD--ELA--DLLKAEGKA--EEEDGKIVVDLTELGYDKVLGGG--KVTRPLVIKA 124
Query: 60 SRVTVRAKAAVEAAGGSVR 78
+ +A +EAAGG V
Sbjct: 125 DAFSEKAIEKIEAAGGEVV 143
>gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate reductase
may be used interchangeably in certain systems. However,
a number of species have distinct complexes, with the
fumarate reductase active under anaerobic conditions.
This model represents the fumarate reductase
flavoprotein subunit from several such species in which
a distinct succinate dehydrogenase is also found. Not
all bona fide fumarate reductases will be found by this
model.
Length = 580
Score = 25.6 bits (56), Expect = 4.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 55 IHLEVSR-VTVRAKAAVEAAGGSVRRVHYN 83
I + R VT+ A A V A GG+ R +N
Sbjct: 172 IEMAEGRLVTILADAVVLATGGAGRVYPFN 201
>gnl|CDD|237027 PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.
Length = 508
Score = 25.5 bits (57), Expect = 4.7
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 53 WPIHLEV----SRVTVRAKAAVEAAGGSVRRVHYNKLGLRA 89
W + LE R TVRA+A V AAG V++ + LGL +
Sbjct: 188 WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPS 228
>gnl|CDD|225311 COG2513, PrpB, PEP phosphonomutase and related enzymes
[Carbohydrate transport and metabolism].
Length = 289
Score = 25.3 bits (56), Expect = 4.9
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 23 TMKTLKDAGAIGKQIEDGV--RLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAA 73
T++ L+ AGA G IED V + G K I V R+ KAAVEA
Sbjct: 98 TVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRI----KAAVEAR 146
>gnl|CDD|221046 pfam11251, DUF3050, Protein of unknown function (DUF3050). This
bacterial family of proteins has no known function.
Length = 232
Score = 25.3 bits (56), Expect = 5.4
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 15/80 (18%)
Query: 1 PVGLGKIAYLIN------------AGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGA 48
P G ++ LIN G+ SH + + +++ GA +IE ++L+ G
Sbjct: 51 PPGNPELRRLINEIVLAEESDENLDGEHQSHFELYLDAMREVGADTSKIEAFLKLVQSGT 110
Query: 49 EKIKWPIHLEVSRVTVRAKA 68
L + + A
Sbjct: 111 S---VFEALAQADLPEPAAR 127
>gnl|CDD|237365 PRK13369, PRK13369, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 502
Score = 24.9 bits (55), Expect = 7.1
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 29 DAGAIGKQIEDGVRLMGRGAEKIKWPIHLE---VSRVTVRAKAAVEAAGGSVRRVHYNKL 85
DA G I R + E W + TVRA+A V AAG V V +
Sbjct: 164 DAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVA 223
Query: 86 GLR 88
G
Sbjct: 224 GSN 226
>gnl|CDD|234214 TIGR03445, mycothiol_MshB,
N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-
glucopyranoside deacetylase. Members of this protein
family are
N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-
glucopyranoside deacetylase, also called
1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-
glucopyranoside deacetylase, the MshB protein of
mycothiol biosynthesis in Mycobacterium tuberculosis and
related species.
Length = 284
Score = 25.1 bits (55), Expect = 7.1
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 54 PIHLEVSRVTVRAKAAVEAAGG-----SVRRVHYNKLGLRAL 90
P H++ RVT RA A A V + ++ AL
Sbjct: 139 PDHIQAHRVTTRAVEAAAEAPLPGTPWQVPKFYWTVTPRSAL 180
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.389
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,855,567
Number of extensions: 414517
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 39
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)