RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 047908
         (94 letters)



>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
           {Escherichia coli [TaxId: 562]}
          Length = 140

 Score = 43.1 bits (101), Expect = 4e-07
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 20  ELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSV 77
            ++ + TLK A  IG QIE    +    A ++  P+ +   RVT  A+AA+EAAGG +
Sbjct: 85  GVVDLNTLKAANIIGIQIEFAKVI---LAGEVTTPVTVRGLRVTKGARAAIEAAGGKI 139


>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 42.3 bits (99), Expect = 6e-07
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 7   IAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRA 66
           +  L      +  +      ++D         D V+++G G  +++  + L     +  A
Sbjct: 73  VTLLAADDVAEVEDGGFRVDVRDVVEEADDA-DYVKVLGAG--QVRHELTLIADDFSEGA 129

Query: 67  KAAVEAAGGSV 77
           +  VE AGGSV
Sbjct: 130 REKVEGAGGSV 140


>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 141

 Score = 38.4 bits (89), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 6   KIAYLINAGKIDS--HELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVT 63
               ++   ++           TL+    + ++    V+L+  G  +I   + + V   +
Sbjct: 67  TTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKN-RPVKLLASG--EISRAVTVHVDAAS 123

Query: 64  VRAKAAVEAAGGSV 77
             A  AVEAAGG V
Sbjct: 124 AAAIKAVEAAGGRV 137


>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 146

 Score = 32.7 bits (74), Expect = 0.002
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 22  ITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVSRVTVRAKAAVEAAGGSV 77
           +T + L  AG + K     ++++G G  K   P+ +     +  A   ++AAGG  
Sbjct: 91  VTPELLVRAGLLKK--GYRLKILGEGEAK---PLKVVAHAFSKSALEKLKAAGGEP 141


>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 115

 Score = 25.8 bits (57), Expect = 0.58
 Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 22/77 (28%)

Query: 1  PVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEVS 60
           V LG+I       +                     +    +++G G   ++  + +   
Sbjct: 42 EVNLGRIERYAQEDET--------------------VVVPGKVLGSG--VLQKDVTVAAV 79

Query: 61 RVTVRAKAAVEAAGGSV 77
            +  A+  ++  G +V
Sbjct: 80 DFSGTAETKIDQVGEAV 96


>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 144

 Score = 24.0 bits (51), Expect = 2.8
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 37 IEDGVRLMGRGAEKIKWPIHLEVS 60
          I DG+RL GR  ++++ PI +E S
Sbjct: 3  IVDGLRLDGRKFDELR-PIKIEAS 25


>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL,
          amidotransferase domain {Salmonella typhimurium [TaxId:
          90371]}
          Length = 262

 Score = 23.2 bits (49), Expect = 6.9
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 68 AAVEAAGGSVRRVHYNKL 85
          AA   AG     VH + L
Sbjct: 25 AAFHRAGFDAIDVHMSDL 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 339,133
Number of extensions: 13727
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 18
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)