Query 047909
Match_columns 78
No_of_seqs 100 out of 172
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 04:29:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0497 Oxidosqualene-lanoster 99.8 6.5E-20 1.4E-24 155.2 1.7 55 1-60 690-745 (760)
2 PLN03012 Camelliol C synthase 99.7 2.8E-18 6.1E-23 144.4 3.1 56 1-61 691-747 (759)
3 PLN02993 lupeol synthase 99.6 5.6E-17 1.2E-21 136.6 3.1 56 1-61 691-747 (763)
4 TIGR03463 osq_cycl 2,3-oxidosq 99.1 3.2E-11 7E-16 98.6 1.5 53 2-61 576-629 (634)
5 TIGR01507 hopene_cyclase squal 98.9 4.4E-10 9.5E-15 92.2 2.2 53 2-61 570-624 (635)
6 cd02892 SQCY_1 Squalene cyclas 98.9 9.8E-10 2.1E-14 88.7 2.1 53 2-61 576-629 (634)
7 TIGR01787 squalene_cyclas squa 98.8 2.1E-09 4.5E-14 87.8 1.5 53 2-61 560-614 (621)
8 cd02889 SQCY Squalene cyclase 97.4 0.0001 2.2E-09 53.2 2.7 48 9-61 295-343 (348)
9 PF09492 Pec_lyase: Pectic aci 95.8 0.006 1.3E-07 47.5 2.1 22 11-32 62-83 (289)
10 TIGR02474 pec_lyase pectate ly 95.3 0.011 2.3E-07 46.2 1.8 29 6-34 62-90 (290)
11 PF13243 Prenyltrans_1: Prenyl 94.9 0.019 4.1E-07 35.4 1.9 28 10-37 45-72 (109)
12 PF13243 Prenyltrans_1: Prenyl 94.8 0.0078 1.7E-07 37.1 0.0 21 13-33 1-21 (109)
13 PF13249 Prenyltrans_2: Prenyl 93.6 0.032 7E-07 34.0 1.0 20 11-30 92-111 (113)
14 COG1657 SqhC Squalene cyclase 93.5 0.0099 2.1E-07 49.7 -1.9 42 9-50 457-499 (517)
15 PF07678 A2M_comp: A-macroglob 93.1 0.052 1.1E-06 39.2 1.5 30 4-33 42-71 (246)
16 cd02896 complement_C3_C4_C5 Pr 92.0 0.11 2.4E-06 38.4 2.1 27 7-33 99-125 (297)
17 cd02897 A2M_2 Proteins similar 90.6 0.22 4.8E-06 36.1 2.4 26 7-32 98-123 (292)
18 PF00432 Prenyltrans: Prenyltr 90.2 0.28 6E-06 27.3 2.1 20 13-32 3-22 (44)
19 cd02889 SQCY Squalene cyclase 89.5 0.21 4.6E-06 36.1 1.6 21 13-33 1-21 (348)
20 PLN03012 Camelliol C synthase 88.6 0.38 8.2E-06 41.9 2.7 31 3-33 631-661 (759)
21 PLN02993 lupeol synthase 86.2 0.53 1.1E-05 41.0 2.3 30 3-32 631-660 (763)
22 cd00688 ISOPREN_C2_like This g 85.3 0.62 1.3E-05 30.9 1.8 25 9-33 102-126 (300)
23 cd02891 A2M_like Proteins simi 85.2 0.73 1.6E-05 32.3 2.2 25 8-32 98-122 (282)
24 TIGR01787 squalene_cyclas squa 83.0 1.1 2.3E-05 37.4 2.6 29 3-31 501-529 (621)
25 cd00688 ISOPREN_C2_like This g 83.0 1.2 2.6E-05 29.5 2.4 27 9-35 256-282 (300)
26 PF13249 Prenyltrans_2: Prenyl 82.6 0.79 1.7E-05 27.8 1.3 17 17-33 1-17 (113)
27 TIGR03463 osq_cycl 2,3-oxidosq 80.6 1.4 3.1E-05 36.8 2.6 22 11-32 525-546 (634)
28 cd02891 A2M_like Proteins simi 69.8 3.8 8.2E-05 28.7 2.1 20 12-31 50-69 (282)
29 cd02892 SQCY_1 Squalene cyclas 69.1 3.3 7.2E-05 34.1 1.9 33 13-45 1-33 (634)
30 COG1657 SqhC Squalene cyclase 66.9 2.6 5.6E-05 35.6 0.9 23 10-32 351-373 (517)
31 TIGR01507 hopene_cyclase squal 61.9 7.3 0.00016 32.8 2.6 33 13-45 18-50 (635)
32 KOG0497 Oxidosqualene-lanoster 61.0 6.2 0.00014 35.1 2.1 30 2-31 629-658 (760)
33 TIGR02474 pec_lyase pectate ly 59.3 7 0.00015 30.7 2.0 34 9-42 135-172 (290)
34 cd02894 GGTase-II Geranylgeran 54.2 11 0.00024 27.7 2.2 22 9-30 194-215 (287)
35 KOG1366 Alpha-macroglobulin [P 53.5 7.3 0.00016 36.5 1.4 29 5-33 1018-1046(1436)
36 PF12037 DUF3523: Domain of un 53.1 8.8 0.00019 30.2 1.6 14 7-20 28-41 (276)
37 PF08241 Methyltransf_11: Meth 51.2 43 0.00093 18.7 4.4 57 7-63 26-89 (95)
38 KOG4666 Predicted phosphate ac 47.0 17 0.00037 30.4 2.5 28 7-34 58-85 (412)
39 PRK14999 histidine utilization 44.4 26 0.00057 24.8 2.8 34 1-34 1-34 (241)
40 PLN02592 ent-copalyl diphospha 40.4 19 0.00041 31.9 1.9 21 13-33 117-137 (800)
41 TIGR03504 FimV_Cterm FimV C-te 39.9 8.7 0.00019 22.3 -0.2 20 15-34 16-35 (44)
42 cd02897 A2M_2 Proteins similar 39.5 26 0.00056 25.4 2.2 23 9-31 255-277 (292)
43 TIGR01577 oligosac_amyl oligos 38.7 24 0.00052 29.0 2.1 24 10-33 313-336 (616)
44 cd02890 PTase Protein prenyltr 37.5 28 0.0006 25.1 2.0 21 12-32 147-167 (286)
45 PLN02279 ent-kaur-16-ene synth 36.9 24 0.00051 31.1 1.9 21 13-33 75-95 (784)
46 COG5561 Predicted metal-bindin 36.2 22 0.00048 24.8 1.3 34 15-53 43-79 (101)
47 cd02894 GGTase-II Geranylgeran 32.8 34 0.00073 25.2 1.9 21 13-33 102-122 (287)
48 PF00755 Carn_acyltransf: Chol 31.7 37 0.0008 27.8 2.1 40 10-49 100-144 (591)
49 cd02893 FTase Protein farnesyl 31.2 40 0.00087 25.4 2.1 32 9-40 144-178 (299)
50 PLN03201 RAB geranylgeranyl tr 28.0 44 0.00096 25.5 1.9 20 13-32 106-125 (316)
51 cd04794 euk_LANCL eukaryotic L 27.4 52 0.0011 24.4 2.1 20 13-32 190-209 (343)
52 PF09094 DUF1925: Domain of un 26.5 70 0.0015 21.2 2.4 39 14-59 37-75 (80)
53 CHL00082 psbZ photosystem II p 26.5 43 0.00092 21.3 1.3 23 56-78 15-37 (62)
54 PF13259 DUF4050: Protein of u 26.5 79 0.0017 21.3 2.7 28 4-31 95-122 (122)
55 TIGR01535 glucan_glucosid gluc 24.7 53 0.0011 28.2 1.9 21 13-33 316-336 (648)
56 PRK02576 psbZ photosystem II r 24.2 52 0.0011 20.9 1.4 23 56-78 15-37 (62)
57 KOG2247 WD40 repeat-containing 24.0 22 0.00048 31.1 -0.4 48 12-59 470-528 (615)
58 KOG4412 26S proteasome regulat 23.7 33 0.00072 26.7 0.6 10 9-18 139-148 (226)
59 COG2188 PhnF Transcriptional r 22.4 59 0.0013 23.4 1.6 26 9-34 4-29 (236)
60 PF08093 Toxin_23: Magi 5 toxi 22.0 44 0.00095 18.9 0.7 10 69-78 2-12 (30)
61 PF00023 Ank: Ankyrin repeat H 21.8 57 0.0012 16.3 1.1 9 10-18 3-11 (33)
62 PF13606 Ank_3: Ankyrin repeat 21.5 57 0.0012 16.7 1.0 9 10-18 3-11 (30)
63 PLN03201 RAB geranylgeranyl tr 21.2 84 0.0018 24.0 2.3 24 9-32 150-173 (316)
64 KOG3587 Galectin, galactose-bi 20.5 33 0.00071 23.4 -0.1 21 19-40 63-83 (143)
65 PF13857 Ank_5: Ankyrin repeat 20.3 60 0.0013 18.2 1.0 9 10-18 17-25 (56)
66 TIGR03043 PS_II_psbZ photosyst 20.0 58 0.0013 20.4 1.0 22 57-78 13-34 (58)
No 1
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.77 E-value=6.5e-20 Score=155.17 Aligned_cols=55 Identities=29% Similarity=0.508 Sum_probs=49.9
Q ss_pred CCCCCCCCCChhHhHHHHHHHhccccCCCCCccceeeeec-cchhhhhhhhhhhhhhhhhh
Q 047909 1 MLQKQADRDPTHLHSVDGYILDLQMENGDNPDDTMNIWYA-MCGLLVIMIKNAIVENKFRL 60 (78)
Q Consensus 1 M~AGqaerDp~PLhRAaklLin~QlenGDwPQqeI~G~f~-~c~l~y~~yr~a~~~n~f~l 60 (78)
+.|||++|||.|+|||||+|||+|++|||||||+|+|+|+ +||++|+.| ||+|||
T Consensus 690 i~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq~i~g~f~~~~~~~y~~y-----r~~F~~ 745 (760)
T KOG0497|consen 690 IMAGQAERDPLPLHRAAKVLINSQLENGDFPQQEIEGVFNKNCMIHYPTY-----RNIFPI 745 (760)
T ss_pred HhcCCcccccchHHHHHHHHHhcccccCCcchhHHHHHhhhhhhhccchh-----hhhccH
Confidence 4689999999999999999999999999999999999999 788777665 578886
No 2
>PLN03012 Camelliol C synthase
Probab=99.71 E-value=2.8e-18 Score=144.44 Aligned_cols=56 Identities=34% Similarity=0.485 Sum_probs=51.3
Q ss_pred CCCCCCCCCChhHhHHHHHHHhccccCCCCCccceeeeec-cchhhhhhhhhhhhhhhhhhe
Q 047909 1 MLQKQADRDPTHLHSVDGYILDLQMENGDNPDDTMNIWYA-MCGLLVIMIKNAIVENKFRLL 61 (78)
Q Consensus 1 M~AGqaerDp~PLhRAaklLin~QlenGDwPQqeI~G~f~-~c~l~y~~yr~a~~~n~f~l~ 61 (78)
|+|||+++|++|||||+++||++|++||+||||+|+|+|+ +|+++|++|| |+|||.
T Consensus 691 i~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~Y~~Yr-----~~FPl~ 747 (759)
T PLN03012 691 IHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLHYAAYR-----NIFPLW 747 (759)
T ss_pred HHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEecCccc-----hHHHHH
Confidence 5789999999999999999999999999999999999999 8888887764 789885
No 3
>PLN02993 lupeol synthase
Probab=99.65 E-value=5.6e-17 Score=136.60 Aligned_cols=56 Identities=32% Similarity=0.429 Sum_probs=51.4
Q ss_pred CCCCCCCCCChhHhHHHHHHHhccccCCCCCccceeeeec-cchhhhhhhhhhhhhhhhhhe
Q 047909 1 MLQKQADRDPTHLHSVDGYILDLQMENGDNPDDTMNIWYA-MCGLLVIMIKNAIVENKFRLL 61 (78)
Q Consensus 1 M~AGqaerDp~PLhRAaklLin~QlenGDwPQqeI~G~f~-~c~l~y~~yr~a~~~n~f~l~ 61 (78)
|+||++++|++||+||+++||++|++||+||||+|+|+|+ +|+|+|++| ||+|||.
T Consensus 691 ~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~i~Y~~Y-----r~~FPl~ 747 (763)
T PLN02993 691 IHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCMLHYATY-----RNTFPLW 747 (763)
T ss_pred HHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccceeccCcc-----chHHHHH
Confidence 4689999999999999999999999999999999999999 898888865 5789985
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.08 E-value=3.2e-11 Score=98.62 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=44.2
Q ss_pred CCCCCCCCChhHhHHHHHHHhccccCCCCCccceeeeec-cchhhhhhhhhhhhhhhhhhe
Q 047909 2 LQKQADRDPTHLHSVDGYILDLQMENGDNPDDTMNIWYA-MCGLLVIMIKNAIVENKFRLL 61 (78)
Q Consensus 2 ~AGqaerDp~PLhRAaklLin~QlenGDwPQqeI~G~f~-~c~l~y~~yr~a~~~n~f~l~ 61 (78)
.+|+++ ..+++||+++|+++|.+||+||||+|+|+|+ .|+++|.+| +|+|||.
T Consensus 576 ~~g~~~--~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l~Y~~Y-----~~~fpl~ 629 (634)
T TIGR03463 576 EAGEGG--HDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAMLDYDLY-----LRYFPTW 629 (634)
T ss_pred HcCCcC--CHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeEecCcc-----chHhHHH
Confidence 456654 4469999999999999999999999999999 777666665 5789985
No 5
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=98.92 E-value=4.4e-10 Score=92.21 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=46.5
Q ss_pred CCCCCCCCChhHhHHHHHHHhccccCCCCCccceeee-ec-cchhhhhhhhhhhhhhhhhhe
Q 047909 2 LQKQADRDPTHLHSVDGYILDLQMENGDNPDDTMNIW-YA-MCGLLVIMIKNAIVENKFRLL 61 (78)
Q Consensus 2 ~AGqaerDp~PLhRAaklLin~QlenGDwPQqeI~G~-f~-~c~l~y~~yr~a~~~n~f~l~ 61 (78)
.+|++ |...++||+++|+++|.+||.|+|+.++|. |+ .|+++|.+|| |+|||.
T Consensus 570 ~ag~~--~~~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi~Y~~Y~-----~~fpl~ 624 (635)
T TIGR01507 570 AAGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYHMYR-----HVFPLL 624 (635)
T ss_pred HhCCC--CcHHHHHHHHHHHHhcCCCCCCCCcccccCcccceeeecccchh-----hHhHHH
Confidence 35655 445799999999999999999999999999 98 9999988887 899985
No 6
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=98.86 E-value=9.8e-10 Score=88.74 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=43.5
Q ss_pred CCCCCCCCChhHhHHHHHHHhccccCCCCCccceeeeec-cchhhhhhhhhhhhhhhhhhe
Q 047909 2 LQKQADRDPTHLHSVDGYILDLQMENGDNPDDTMNIWYA-MCGLLVIMIKNAIVENKFRLL 61 (78)
Q Consensus 2 ~AGqaerDp~PLhRAaklLin~QlenGDwPQqeI~G~f~-~c~l~y~~yr~a~~~n~f~l~ 61 (78)
.+|+. |..+++||+++|+++|.++|+|+|++++|+|. .|+++|. .|+|+|||.
T Consensus 576 ~~g~~--~~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~~y~-----~Y~~~fpl~ 629 (634)
T cd02892 576 AAGEP--DSEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYIRYH-----NYRNYFPLW 629 (634)
T ss_pred HcCCC--ChHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeeeccC-----chhhHhHHH
Confidence 35554 55689999999999999999999999999999 6555554 557899985
No 7
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=98.77 E-value=2.1e-09 Score=87.78 Aligned_cols=53 Identities=23% Similarity=0.176 Sum_probs=43.9
Q ss_pred CCCCCCCCChhHhHHHHHHHhccccCCCCCccceeeeec--cchhhhhhhhhhhhhhhhhhe
Q 047909 2 LQKQADRDPTHLHSVDGYILDLQMENGDNPDDTMNIWYA--MCGLLVIMIKNAIVENKFRLL 61 (78)
Q Consensus 2 ~AGqaerDp~PLhRAaklLin~QlenGDwPQqeI~G~f~--~c~l~y~~yr~a~~~n~f~l~ 61 (78)
.+|+++. ..++||+++|+++|.+||.|+|+.++|.|. .|+++|++ |+|+|||+
T Consensus 560 ~ag~~~~--~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~i~Y~~-----Y~~~fpl~ 614 (621)
T TIGR01787 560 AAGEADS--EAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFYLKYTN-----YRNIFPLW 614 (621)
T ss_pred HcCccch--HHHHHHHHHHHHhCCCCCCCCCccccCCCCcccceecccc-----cchhhHHH
Confidence 3555543 469999999999999999999999999887 67777775 57899985
No 8
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=97.43 E-value=0.0001 Score=53.21 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=40.9
Q ss_pred CChhHhHHHHHHHhccccCCCCCccceeeeec-cchhhhhhhhhhhhhhhhhhe
Q 047909 9 DPTHLHSVDGYILDLQMENGDNPDDTMNIWYA-MCGLLVIMIKNAIVENKFRLL 61 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwPQqeI~G~f~-~c~l~y~~yr~a~~~n~f~l~ 61 (78)
|...+.||+++|.+.|.++|.|+....+|.+. .+ .|++..+.++|||.
T Consensus 295 ~~~~v~~a~~wL~~~Q~~dG~f~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 343 (348)
T cd02889 295 DSEAVKRGVKYLLNTQQEDGDWPQEEITGVFFKNF-----YIRYHNYRNYFPLW 343 (348)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcCCceeeeeeccee-----eeccCccchHhHHH
Confidence 55679999999999999999999999999888 54 56666777888875
No 9
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=95.77 E-value=0.006 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=17.6
Q ss_pred hhHhHHHHHHHhccccCCCCCc
Q 047909 11 THLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 11 ~PLhRAaklLin~QlenGDwPQ 32 (78)
+.+.||+.+|+++|-+||-|||
T Consensus 62 ~A~~kgl~ylL~aQypnGGWPQ 83 (289)
T PF09492_consen 62 EAFLKGLDYLLKAQYPNGGWPQ 83 (289)
T ss_dssp HHHHHHHHHHHHHS-TTS--BS
T ss_pred HHHHHHHHHHHHhhCCCCCCCc
Confidence 4588999999999999999999
No 10
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=95.25 E-value=0.011 Score=46.21 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=24.3
Q ss_pred CCCCChhHhHHHHHHHhccccCCCCCccc
Q 047909 6 ADRDPTHLHSVDGYILDLQMENGDNPDDT 34 (78)
Q Consensus 6 aerDp~PLhRAaklLin~QlenGDwPQqe 34 (78)
..+..+.+.||+.+|+++|-+||-|||=.
T Consensus 62 d~~y~~A~~rgld~LL~aQypnGGWPQf~ 90 (290)
T TIGR02474 62 NAKYRDAARKGIEYLLKAQYPNGGWPQFY 90 (290)
T ss_pred chhHHHHHHHHHHHHHhhhCCCCCcCccc
Confidence 34455679999999999999999999854
No 11
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=94.91 E-value=0.019 Score=35.36 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=16.7
Q ss_pred ChhHhHHHHHHHhccccCCCCCccceee
Q 047909 10 PTHLHSVDGYILDLQMENGDNPDDTMNI 37 (78)
Q Consensus 10 p~PLhRAaklLin~QlenGDwPQqeI~G 37 (78)
...|.||+++|++.|.+||.|.....+.
T Consensus 45 ~~ai~ka~~~l~~~Q~~dG~w~~~~~~~ 72 (109)
T PF13243_consen 45 DEAIKKAIDWLLSHQNPDGGWGYSGGEY 72 (109)
T ss_dssp SBSSHHHHHHHHH---TTS--S-TS--H
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcCCCC
Confidence 3459999999999999999999874433
No 12
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=94.82 E-value=0.0078 Score=37.07 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=0.0
Q ss_pred HhHHHHHHHhccccCCCCCcc
Q 047909 13 LHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQq 33 (78)
|.+|+.+|++.|.+||.|+-.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~ 21 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYN 21 (109)
T ss_dssp ---------------------
T ss_pred Ccccccccccccccccccccc
Confidence 578999999999999999755
No 13
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=93.64 E-value=0.032 Score=34.02 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=17.5
Q ss_pred hhHhHHHHHHHhccccCCCC
Q 047909 11 THLHSVDGYILDLQMENGDN 30 (78)
Q Consensus 11 ~PLhRAaklLin~QlenGDw 30 (78)
..+.||+++|++.|.+||.|
T Consensus 92 ~~~~~a~~~l~~~Q~~dGg~ 111 (113)
T PF13249_consen 92 EAVRKAVDWLLSCQNPDGGW 111 (113)
T ss_dssp TTHCCHHHHHHHTB-TTSSB
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 45899999999999999998
No 14
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=93.50 E-value=0.0099 Score=49.69 Aligned_cols=42 Identities=5% Similarity=-0.066 Sum_probs=38.8
Q ss_pred CChhHhHHHHHHHhccccCCCCCccceeeeec-cchhhhhhhh
Q 047909 9 DPTHLHSVDGYILDLQMENGDNPDDTMNIWYA-MCGLLVIMIK 50 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwPQqeI~G~f~-~c~l~y~~yr 50 (78)
++.+|++++++|+++|-++|.|-+.+.+|.|. +|-+.|+.|+
T Consensus 457 ~~~~i~~~~~~~~~~~~~~g~~~~~~~eg~~~~~~~~~~~~~~ 499 (517)
T COG1657 457 NQEAIKPGINLLVSDQEPDGSWREAEREGGFNCNFAIGYPYYL 499 (517)
T ss_pred chhhhcccccccccCcCCCCccccceecccCCCCcceeeeeEE
Confidence 55569999999999999999999999999999 8888999888
No 15
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=93.09 E-value=0.052 Score=39.23 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=24.4
Q ss_pred CCCCCCChhHhHHHHHHHhccccCCCCCcc
Q 047909 4 KQADRDPTHLHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 4 GqaerDp~PLhRAaklLin~QlenGDwPQq 33 (78)
.+...|+.-|.+|+++|+++|.+||.|...
T Consensus 42 ~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~ 71 (246)
T PF07678_consen 42 KYIFVDENVICRAVKWLISQQQPDGSFEED 71 (246)
T ss_dssp TTS-CEHHHHHHHHHHHHHHBETTSEB--S
T ss_pred HhhcCCHHHHHHHHHHHHHhhcCCCccccC
Confidence 456788999999999999999999999654
No 16
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=91.99 E-value=0.11 Score=38.40 Aligned_cols=27 Identities=11% Similarity=0.184 Sum_probs=24.0
Q ss_pred CCCChhHhHHHHHHHhccccCCCCCcc
Q 047909 7 DRDPTHLHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 7 erDp~PLhRAaklLin~QlenGDwPQq 33 (78)
..|+..|.||+++|+++|.+||.|...
T Consensus 99 ~v~~~~l~~a~~wL~~~Q~~dG~f~e~ 125 (297)
T cd02896 99 PVDQNVICGSVNWLISNQKPDGSFQEP 125 (297)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCeeCCC
Confidence 467778999999999999999999954
No 17
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=90.60 E-value=0.22 Score=36.13 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=23.0
Q ss_pred CCCChhHhHHHHHHHhccccCCCCCc
Q 047909 7 DRDPTHLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 7 erDp~PLhRAaklLin~QlenGDwPQ 32 (78)
..|...|.||+++|+++|.+||.|..
T Consensus 98 ~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 98 YIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 45667899999999999999999974
No 18
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=90.22 E-value=0.28 Score=27.30 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=17.8
Q ss_pred HhHHHHHHHhccccCCCCCc
Q 047909 13 LHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQ 32 (78)
..++.++|+++|.++|-|-.
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~ 22 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGG 22 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBS
T ss_pred HHHHHHHHHHHCCCCCCCCC
Confidence 57899999999999999864
No 19
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=89.55 E-value=0.21 Score=36.13 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=19.1
Q ss_pred HhHHHHHHHhccccCCCCCcc
Q 047909 13 LHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQq 33 (78)
|.||+++|.++|.+||-|+-+
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~ 21 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGE 21 (348)
T ss_pred CchHHHHHHHhccCCCCcccc
Confidence 578999999999999999964
No 20
>PLN03012 Camelliol C synthase
Probab=88.60 E-value=0.38 Score=41.91 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=24.9
Q ss_pred CCCCCCCChhHhHHHHHHHhccccCCCCCcc
Q 047909 3 QKQADRDPTHLHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 3 AGqaerDp~PLhRAaklLin~QlenGDwPQq 33 (78)
+|....+...+.||+++|++.|.+||.|..-
T Consensus 631 ~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs 661 (759)
T PLN03012 631 AGKTFNDCEAIRKGVHFLLAAQKDNGGWGES 661 (759)
T ss_pred hCccCCCcHHHHHHHHHHHHhcCCCCCcCCC
Confidence 4544455457999999999999999999853
No 21
>PLN02993 lupeol synthase
Probab=86.21 E-value=0.53 Score=41.03 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=24.2
Q ss_pred CCCCCCCChhHhHHHHHHHhccccCCCCCc
Q 047909 3 QKQADRDPTHLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 3 AGqaerDp~PLhRAaklLin~QlenGDwPQ 32 (78)
+|....+...+.||+++|++.|.+||.|-.
T Consensus 631 ~G~~~~~~~~IrrAv~fLls~Q~~DGGWGE 660 (763)
T PLN02993 631 AGKTYNDCLAMRKGVHFLLTIQRDDGGWGE 660 (763)
T ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCCCcCc
Confidence 455444545799999999999999999964
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=85.32 E-value=0.62 Score=30.92 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.4
Q ss_pred CChhHhHHHHHHHhccccCCCCCcc
Q 047909 9 DPTHLHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwPQq 33 (78)
+...++|++++|++.|.+||.|.--
T Consensus 102 ~~~~~~~~~~~l~~~q~~dG~~~~~ 126 (300)
T cd00688 102 DRIDLARALNWLLSLQNEDGGFRED 126 (300)
T ss_pred CHHHHHHHHHHHHHccCCCCCeeee
Confidence 4456999999999999999999753
No 23
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=85.16 E-value=0.73 Score=32.31 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.6
Q ss_pred CCChhHhHHHHHHHhccccCCCCCc
Q 047909 8 RDPTHLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 8 rDp~PLhRAaklLin~QlenGDwPQ 32 (78)
.|+..|.||+++|...|.++|.|.-
T Consensus 98 v~~~~i~ra~~~L~~~q~~~g~~~~ 122 (282)
T cd02891 98 VDENVLARALGWLVPQQKEDGSFRE 122 (282)
T ss_pred CCHHHHHHHHHHHHhccCCCCCcCC
Confidence 4556699999999999999999964
No 24
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=83.04 E-value=1.1 Score=37.41 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=23.4
Q ss_pred CCCCCCCChhHhHHHHHHHhccccCCCCC
Q 047909 3 QKQADRDPTHLHSVDGYILDLQMENGDNP 31 (78)
Q Consensus 3 AGqaerDp~PLhRAaklLin~QlenGDwP 31 (78)
+|+...|...++||+++|++.|.+||.|-
T Consensus 501 ~G~~~~~~~~i~rA~~~L~~~Q~~DGGWg 529 (621)
T TIGR01787 501 AGRTYRNCPEVQKACDWLLSRQMPDGGWG 529 (621)
T ss_pred hCCcccCCHHHHHHHHHHHhhcCCCCCCC
Confidence 45544444679999999999999999995
No 25
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=82.98 E-value=1.2 Score=29.52 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.6
Q ss_pred CChhHhHHHHHHHhccccCCCCCccce
Q 047909 9 DPTHLHSVDGYILDLQMENGDNPDDTM 35 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwPQqeI 35 (78)
+...+.+++++|+++|.++|.|.-...
T Consensus 256 ~~~~~~~~~~~L~~~q~~~G~w~~~~~ 282 (300)
T cd00688 256 DLEDAEKLVKWLLSQQNEDGGFSSKPG 282 (300)
T ss_pred CcccHHHHHHHHHhccCCCCCcCcCCC
Confidence 455689999999999999999987543
No 26
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=82.61 E-value=0.79 Score=27.83 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.1
Q ss_pred HHHHHhccccCCCCCcc
Q 047909 17 DGYILDLQMENGDNPDD 33 (78)
Q Consensus 17 aklLin~QlenGDwPQq 33 (78)
+++|++.|.+||.|+-.
T Consensus 1 v~~L~~~Q~~dGgw~~~ 17 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF 17 (113)
T ss_dssp HHHHHHHB-TTSSBBSS
T ss_pred CHhhHHHcCCCCCCcCC
Confidence 57899999999999973
No 27
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=80.65 E-value=1.4 Score=36.85 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=19.9
Q ss_pred hhHhHHHHHHHhccccCCCCCc
Q 047909 11 THLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 11 ~PLhRAaklLin~QlenGDwPQ 32 (78)
.-+.||+++|++.|.+||.|..
T Consensus 525 ~~i~rA~~~Ll~~Q~~DGgWg~ 546 (634)
T TIGR03463 525 MALQRAAAWLRSYQRADGGWGE 546 (634)
T ss_pred HHHHHHHHHHHHccCCCCCccC
Confidence 4599999999999999999963
No 28
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=69.80 E-value=3.8 Score=28.71 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=18.1
Q ss_pred hHhHHHHHHHhccccCCCCC
Q 047909 12 HLHSVDGYILDLQMENGDNP 31 (78)
Q Consensus 12 PLhRAaklLin~QlenGDwP 31 (78)
-|.+|++.|++.|.+||.|.
T Consensus 50 ~i~~~~~~l~~~Q~~dGgf~ 69 (282)
T cd02891 50 YIRKGYQRLLTYQRSDGSFS 69 (282)
T ss_pred HHHHHHHHHHhhcCCCCCcc
Confidence 48899999999999999983
No 29
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=69.09 E-value=3.3 Score=34.15 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=26.0
Q ss_pred HhHHHHHHHhccccCCCCCccceeeeeccchhh
Q 047909 13 LHSVDGYILDLQMENGDNPDDTMNIWYAMCGLL 45 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQqeI~G~f~~c~l~ 45 (78)
|.||..+|.+.|.+||-|+-|--...|.++++-
T Consensus 1 ~~~~~~~l~~~q~~dG~W~~e~~~~~~~~~~~i 33 (634)
T cd02892 1 IRRALEFLLSLQAPDGHWPGELEGPLFITAEYI 33 (634)
T ss_pred ChHHHHHHHHhccCCCceecccCCcchhhHHHH
Confidence 579999999999999999976655556555543
No 30
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=66.91 E-value=2.6 Score=35.62 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.7
Q ss_pred ChhHhHHHHHHHhccccCCCCCc
Q 047909 10 PTHLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 10 p~PLhRAaklLin~QlenGDwPQ 32 (78)
-.|+.||+.+|+++|.++|.|--
T Consensus 351 ~~~i~~a~e~LL~~Q~~~GsW~g 373 (517)
T COG1657 351 GQPIERALEWLLSDQEPDGSWYG 373 (517)
T ss_pred CCcccHHHhhhhhhccccCceee
Confidence 46799999999999999999864
No 31
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=61.94 E-value=7.3 Score=32.80 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=26.5
Q ss_pred HhHHHHHHHhccccCCCCCccceeeeeccchhh
Q 047909 13 LHSVDGYILDLQMENGDNPDDTMNIWYAMCGLL 45 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQqeI~G~f~~c~l~ 45 (78)
|+||..+|.+.|.++|-|+-|--...|.++++-
T Consensus 18 ~~~~~~~l~~~Q~~dG~W~~e~~~~~~~~a~~i 50 (635)
T TIGR01507 18 IDRAVDYLLSCQKDEGYWWGELESNVTIEAEYV 50 (635)
T ss_pred HHHHHHHHHHhccCCCccccccCCcchhcHHHH
Confidence 899999999999999999966555555566543
No 32
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=60.98 E-value=6.2 Score=35.15 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=26.9
Q ss_pred CCCCCCCCChhHhHHHHHHHhccccCCCCC
Q 047909 2 LQKQADRDPTHLHSVDGYILDLQMENGDNP 31 (78)
Q Consensus 2 ~AGqaerDp~PLhRAaklLin~QlenGDwP 31 (78)
.||+.-.+-++++||..+|++.|+++|-|-
T Consensus 629 aaGkty~nc~~irka~~Fll~~Q~~~GGWg 658 (760)
T KOG0497|consen 629 AAGKTYENCEAIRKACDFLLSKQNPDGGWG 658 (760)
T ss_pred hcchhhhccHHHHHHHHHHHhhhcccCCCc
Confidence 467777888999999999999999999995
No 33
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=59.26 E-value=7 Score=30.72 Aligned_cols=34 Identities=12% Similarity=-0.122 Sum_probs=26.4
Q ss_pred CChhHhHHHHHHHhccccCC----CCCccceeeeeccc
Q 047909 9 DPTHLHSVDGYILDLQMENG----DNPDDTMNIWYAMC 42 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenG----DwPQqeI~G~f~~c 42 (78)
...++.||+.+|++.|...| -|.||.=+-.+.+.
T Consensus 135 ~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa 172 (290)
T TIGR02474 135 AKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPK 172 (290)
T ss_pred HHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccc
Confidence 35679999999999999887 78888765545443
No 34
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=54.21 E-value=11 Score=27.74 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.0
Q ss_pred CChhHhHHHHHHHhccccCCCC
Q 047909 9 DPTHLHSVDGYILDLQMENGDN 30 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDw 30 (78)
|...+++++++|+++|.++|-|
T Consensus 194 ~~~~~~~~~~~L~~~q~~~GGf 215 (287)
T cd02894 194 DLIDRDRLGWWLCERQLPSGGL 215 (287)
T ss_pred cccCHHHHHHHHHHhCCCCCCc
Confidence 3345999999999999999988
No 35
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=53.46 E-value=7.3 Score=36.47 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=25.7
Q ss_pred CCCCCChhHhHHHHHHHhccccCCCCCcc
Q 047909 5 QADRDPTHLHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 5 qaerDp~PLhRAaklLin~QlenGDwPQq 33 (78)
+...|+.-|++|..+|.++|.+||+|.-.
T Consensus 1018 ~i~id~~~i~~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 1018 YIFIDPNVITQALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred ceEecHHHHHHHHHHHHHhhccCceEecc
Confidence 55779999999999999999999999754
No 36
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=53.07 E-value=8.8 Score=30.22 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=12.4
Q ss_pred CCCChhHhHHHHHH
Q 047909 7 DRDPTHLHSVDGYI 20 (78)
Q Consensus 7 erDp~PLhRAaklL 20 (78)
.-||++|.||||.|
T Consensus 28 ~FDP~aLERaAkAl 41 (276)
T PF12037_consen 28 GFDPEALERAAKAL 41 (276)
T ss_pred CCCcHHHHHHHHHH
Confidence 45999999999987
No 37
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=51.19 E-value=43 Score=18.74 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=38.3
Q ss_pred CCCChhHhHHHHHHHhcc-------ccCCCCCccceeeeeccchhhhhhhhhhhhhhhhhheee
Q 047909 7 DRDPTHLHSVDGYILDLQ-------MENGDNPDDTMNIWYAMCGLLVIMIKNAIVENKFRLLVE 63 (78)
Q Consensus 7 erDp~PLhRAaklLin~Q-------lenGDwPQqeI~G~f~~c~l~y~~yr~a~~~n~f~l~~~ 63 (78)
|.++.-++.+.+.+-+.+ .++-.||.+.+--++....+++..-+.+..+++.|.|-.
T Consensus 26 D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~ 89 (95)
T PF08241_consen 26 DISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKP 89 (95)
T ss_dssp ES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEE
T ss_pred eCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCc
Confidence 344555666666555443 455677888888899988888887777888888888754
No 38
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=47.05 E-value=17 Score=30.41 Aligned_cols=28 Identities=0% Similarity=-0.273 Sum_probs=24.7
Q ss_pred CCCChhHhHHHHHHHhccccCCCCCccc
Q 047909 7 DRDPTHLHSVDGYILDLQMENGDNPDDT 34 (78)
Q Consensus 7 erDp~PLhRAaklLin~QlenGDwPQqe 34 (78)
-+|+.-++.++.+++.+-+.+|.|||=-
T Consensus 58 ~~~~ds~k~tV~~i~~~~~~~~~~~qIl 85 (412)
T KOG4666|consen 58 FPMTENIKLAVALVTLVPLRFLLSMSIL 85 (412)
T ss_pred CCChHHHHHHHHHHHHhhhccCCCceee
Confidence 4677789999999999999999999843
No 39
>PRK14999 histidine utilization repressor; Provisional
Probab=44.40 E-value=26 Score=24.79 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=26.9
Q ss_pred CCCCCCCCCChhHhHHHHHHHhccccCCCCCccc
Q 047909 1 MLQKQADRDPTHLHSVDGYILDLQMENGDNPDDT 34 (78)
Q Consensus 1 M~AGqaerDp~PLhRAaklLin~QlenGDwPQqe 34 (78)
|+..--..++.|++.-++-.|..+..+|+|+..+
T Consensus 1 ~~~~~~~~~~~ply~qi~~~i~~~I~~g~~~~G~ 34 (241)
T PRK14999 1 MYSSRSRSAPAPFYETVKQDICKKIAGGVWQPHD 34 (241)
T ss_pred CcccccCcCCCcHHHHHHHHHHHHHHcCCCCCCC
Confidence 4444445567899999999999999999998665
No 40
>PLN02592 ent-copalyl diphosphate synthase
Probab=40.44 E-value=19 Score=31.87 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.2
Q ss_pred HhHHHHHHHhccccCCCCCcc
Q 047909 13 LHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQq 33 (78)
.-...++|++.|++||.|-..
T Consensus 117 FP~~~~wIl~nQ~~DGsWG~~ 137 (800)
T PLN02592 117 FPSSLQWIANNQLSDGSWGDA 137 (800)
T ss_pred CHHHHHHHHHccCCCCCCCCC
Confidence 347899999999999999664
No 41
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.94 E-value=8.7 Score=22.25 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.6
Q ss_pred HHHHHHHhccccCCCCCccc
Q 047909 15 SVDGYILDLQMENGDNPDDT 34 (78)
Q Consensus 15 RAaklLin~QlenGDwPQqe 34 (78)
.+||-|++.-++.|++||++
T Consensus 16 e~Ar~lL~evl~~~~~~q~~ 35 (44)
T TIGR03504 16 EGARELLEEVIEEGDEAQRQ 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHH
Confidence 46888888888999999875
No 42
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=39.47 E-value=26 Score=25.44 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=19.3
Q ss_pred CChhHhHHHHHHHhccccCCCCC
Q 047909 9 DPTHLHSVDGYILDLQMENGDNP 31 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwP 31 (78)
+...+.+++++|++.|-++|-|.
T Consensus 255 ~~~~~~~~v~WL~~~q~~~Ggf~ 277 (292)
T cd02897 255 DLAEALPIVKWLAKQRNSLGGFS 277 (292)
T ss_pred cHhHHHHHHHHHHHcCCCCCCcc
Confidence 44558899999999999999886
No 43
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=38.72 E-value=24 Score=28.98 Aligned_cols=24 Identities=8% Similarity=0.136 Sum_probs=20.4
Q ss_pred ChhHhHHHHHHHhccccCCCCCcc
Q 047909 10 PTHLHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 10 p~PLhRAaklLin~QlenGDwPQq 33 (78)
+.--++..++|.+.|.++|.|+|.
T Consensus 313 ~~~a~~~l~~l~~~q~~~G~~~~~ 336 (616)
T TIGR01577 313 HDRVDRFFRWAMQTQSRDGSWQQR 336 (616)
T ss_pred HHHHHHHHHHHHHhhCcCCCcceE
Confidence 445678899999999999998875
No 44
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=37.47 E-value=28 Score=25.08 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.9
Q ss_pred hHhHHHHHHHhccccCCCCCc
Q 047909 12 HLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 12 PLhRAaklLin~QlenGDwPQ 32 (78)
-..+++++|.+.|.+||-|-.
T Consensus 147 ~~~~~~~~l~~~Q~~dGGf~~ 167 (286)
T cd02890 147 DKEKLIDYILSCQNYDGGFGG 167 (286)
T ss_pred hHHHHHHHHHHhCCCCCCcCC
Confidence 478999999999999999964
No 45
>PLN02279 ent-kaur-16-ene synthase
Probab=36.86 E-value=24 Score=31.08 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.7
Q ss_pred HhHHHHHHHhccccCCCCCcc
Q 047909 13 LHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQq 33 (78)
.-...++|++.|++||.|--.
T Consensus 75 Fp~~~~wil~nQ~~dGsWg~~ 95 (784)
T PLN02279 75 FPECVKWLLENQLEDGSWGLP 95 (784)
T ss_pred ChHHHHHHHhcCCCCCCCCCC
Confidence 346899999999999999643
No 46
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=36.20 E-value=22 Score=24.79 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHHHHHhccccCCCCCccceeeeeccchhhh---hhhhhhh
Q 047909 15 SVDGYILDLQMENGDNPDDTMNIWYAMCGLLV---IMIKNAI 53 (78)
Q Consensus 15 RAaklLin~QlenGDwPQqeI~G~f~~c~l~y---~~yr~a~ 53 (78)
|.-..++..-+.+| -|.| +|++||+.. +.|++|+
T Consensus 43 lvpn~~k~lk~~eg---aeai--hfasCml~~~PkCpy~~~e 79 (101)
T COG5561 43 LVPNQIKQLKGKEG---AEAI--HFASCMLAFKPKCPYASAE 79 (101)
T ss_pred hhHHHHHHHhhccc---ccee--eeeeeeeccCCCCCccCHH
Confidence 44455555566666 3444 889999999 5666543
No 47
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=32.79 E-value=34 Score=25.22 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.7
Q ss_pred HhHHHHHHHhccccCCCCCcc
Q 047909 13 LHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQq 33 (78)
+++++++|.+.|-++|-|-..
T Consensus 102 ~~~~~~~i~~~q~~dGgf~~~ 122 (287)
T cd02894 102 KEKIAKFIKGLQNEDGSFSGD 122 (287)
T ss_pred HHHHHHHHHHHcCCCCCeecC
Confidence 789999999999999999643
No 48
>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family. These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....
Probab=31.66 E-value=37 Score=27.82 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=28.5
Q ss_pred ChhHhHHHHHHH-----hccccCCCCCccceeeeeccchhhhhhh
Q 047909 10 PTHLHSVDGYIL-----DLQMENGDNPDDTMNIWYAMCGLLVIMI 49 (78)
Q Consensus 10 p~PLhRAaklLi-----n~QlenGDwPQqeI~G~f~~c~l~y~~y 49 (78)
...+.|||.++. ..++++|..|++.+.|-.+.||-.|..+
T Consensus 100 ~~q~~rAA~li~~~~~f~~~l~~~~l~p~~~~~~~plcM~qy~~l 144 (591)
T PF00755_consen 100 HDQLERAARLIHAALKFKRLLRRGKLPPDVSRGGQPLCMSQYRRL 144 (591)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-S--CEECSSEEE--GGGGGS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCceecCCCCcccchHHHHh
Confidence 356999999875 5789999999999999788898877654
No 49
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=31.24 E-value=40 Score=25.40 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=24.2
Q ss_pred CChhHhHHHHHHHhccccCCCC---Cccceeeeec
Q 047909 9 DPTHLHSVDGYILDLQMENGDN---PDDTMNIWYA 40 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDw---PQqeI~G~f~ 40 (78)
++..+++++++|.++|-.+|-| |-.|--|.|.
T Consensus 144 ~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yT 178 (299)
T cd02893 144 TDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYT 178 (299)
T ss_pred chhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHH
Confidence 4455899999999999999988 5555545444
No 50
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=27.97 E-value=44 Score=25.48 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.4
Q ss_pred HhHHHHHHHhccccCCCCCc
Q 047909 13 LHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQ 32 (78)
..+++++|.+.|.++|.|-.
T Consensus 106 ~~~~~~~l~s~Q~~dGgF~~ 125 (316)
T PLN03201 106 ADKVASYVAGLQNEDGSFSG 125 (316)
T ss_pred HHHHHHHHHHhcCCCCCccC
Confidence 45699999999999999964
No 51
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=27.38 E-value=52 Score=24.45 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=18.0
Q ss_pred HhHHHHHHHhccccCCCCCc
Q 047909 13 LHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQ 32 (78)
++++++.+++.+.++|.||.
T Consensus 190 i~~~i~~~~~~~~~~g~w~~ 209 (343)
T cd04794 190 IKRSLDYLLSLQFPSGNFPS 209 (343)
T ss_pred HHHHHHHHHHhhccCCCCCC
Confidence 78899999999999999985
No 52
>PF09094 DUF1925: Domain of unknown function (DUF1925); InterPro: IPR015178 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). It is adjacent to the C-terminal domain (see IPR015179 from INTERPRO). The exact function of this domain is, as yet, unknown. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=26.55 E-value=70 Score=21.18 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=28.3
Q ss_pred hHHHHHHHhccccCCCCCccceeeeeccchhhhhhhhhhhhhhhhh
Q 047909 14 HSVDGYILDLQMENGDNPDDTMNIWYAMCGLLVIMIKNAIVENKFR 59 (78)
Q Consensus 14 hRAaklLin~QlenGDwPQqeI~G~f~~c~l~y~~yr~a~~~n~f~ 59 (78)
..|-..|...|.-|==|. |.| +|+--|.+|+|+++++-.
T Consensus 37 ~~a~~~L~~aQcNd~yWH-----G~F--GGlYlp~LR~a~y~~LI~ 75 (80)
T PF09094_consen 37 EEAREELYRAQCNDAYWH-----GLF--GGLYLPHLRHAAYRHLIK 75 (80)
T ss_dssp HHHHHHHHHTTBGGGG-------SSS---GGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcchhc-----ccc--cceecHHHHHHHHHHHHH
Confidence 458888999999988887 444 577888999999999754
No 53
>CHL00082 psbZ photosystem II protein Z
Probab=26.49 E-value=43 Score=21.31 Aligned_cols=23 Identities=35% Similarity=0.821 Sum_probs=19.7
Q ss_pred hhhhheeeeeeeeeeCCcccccC
Q 047909 56 NKFRLLVELQVVFCKPNTWCKSK 78 (78)
Q Consensus 56 n~f~l~~~~~~~~~~~~~~~~~~ 78 (78)
=-|-|.|-.-|+|-.|+.|-.||
T Consensus 15 ~Sf~LVVgVPV~~Asp~~W~~sK 37 (62)
T CHL00082 15 TSFLLVIGVPVVFASPDGWSSNK 37 (62)
T ss_pred HHHHHHheeeeEEECCCcchhhc
Confidence 34678899999999999998876
No 54
>PF13259 DUF4050: Protein of unknown function (DUF4050)
Probab=26.47 E-value=79 Score=21.29 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCCCCCChhHhHHHHHHHhccccCCCCC
Q 047909 4 KQADRDPTHLHSVDGYILDLQMENGDNP 31 (78)
Q Consensus 4 GqaerDp~PLhRAaklLin~QlenGDwP 31 (78)
+.+=+.|-||.-.+++|..-=.++|.||
T Consensus 95 ~~pf~~PI~L~dmv~~Lv~gW~~eg~w~ 122 (122)
T PF13259_consen 95 NKPFKQPIPLSDMVDFLVDGWEEEGLWP 122 (122)
T ss_pred CCCCCCCcCHHHHHHHHHHHhhcCCccC
Confidence 4455678899999999999999999997
No 55
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=24.73 E-value=53 Score=28.25 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.1
Q ss_pred HhHHHHHHHhccccCCCCCcc
Q 047909 13 LHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQq 33 (78)
-.++.++|.+.|.++|.|+|-
T Consensus 316 a~~~~~~l~~~~~~~G~~lq~ 336 (648)
T TIGR01535 316 ALRSLDYLAKVQQDNGMFPQN 336 (648)
T ss_pred HHHHHHHHHHHhccCCCcCce
Confidence 578999999999999999987
No 56
>PRK02576 psbZ photosystem II reaction center protein Z; Provisional
Probab=24.16 E-value=52 Score=20.92 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=19.5
Q ss_pred hhhhheeeeeeeeeeCCcccccC
Q 047909 56 NKFRLLVELQVVFCKPNTWCKSK 78 (78)
Q Consensus 56 n~f~l~~~~~~~~~~~~~~~~~~ 78 (78)
=-|-|+|-.-|+|-.|+.|-.||
T Consensus 15 ~SfiLVVgVPV~~Asp~gW~~sK 37 (62)
T PRK02576 15 MSFVLVVGVPVAYASPQNWGQSK 37 (62)
T ss_pred HHHHHHheeeeEEECCCcccccc
Confidence 34678899999999999998776
No 57
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=24.02 E-value=22 Score=31.13 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=35.5
Q ss_pred hHhHHHHHHHhccccCCCCCccceeeee--c---cchhhhhhhhhhh------hhhhhh
Q 047909 12 HLHSVDGYILDLQMENGDNPDDTMNIWY--A---MCGLLVIMIKNAI------VENKFR 59 (78)
Q Consensus 12 PLhRAaklLin~QlenGDwPQqeI~G~f--~---~c~l~y~~yr~a~------~~n~f~ 59 (78)
-+|+|||+||.---.-=+||++-+.-.| + +.++-.+.|+.|+ ++|-|.
T Consensus 470 ~lhLaAksl~~t~nvi~~Fpe~~~~~l~sya~~~~~~~~~t~~~~a~~~~~~~~~n~~~ 528 (615)
T KOG2247|consen 470 RLHLAAKSLMLTDNVIIEFPEARNATLYSYALTENFLIFTTSYKGAIWETFTIDKNTFA 528 (615)
T ss_pred HHHHHHHHHHhhhchhhcCcHhhhhhhheeeeeccceeeeecccceeEEEEeccccccc
Confidence 4899999999888888899999653222 2 5567778888885 566654
No 58
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=23.72 E-value=33 Score=26.75 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=7.8
Q ss_pred CChhHhHHHH
Q 047909 9 DPTHLHSVDG 18 (78)
Q Consensus 9 Dp~PLhRAak 18 (78)
..|||||||.
T Consensus 139 ~qtplHRAAa 148 (226)
T KOG4412|consen 139 GQTPLHRAAA 148 (226)
T ss_pred cCchhHHHHh
Confidence 3589999974
No 59
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=22.36 E-value=59 Score=23.40 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.4
Q ss_pred CChhHhHHHHHHHhccccCCCCCccc
Q 047909 9 DPTHLHSVDGYILDLQMENGDNPDDT 34 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwPQqe 34 (78)
++.|++.-++--|..+..+|+||-.+
T Consensus 4 ~~~plY~qI~~~i~~~I~~G~~~~G~ 29 (236)
T COG2188 4 SAMPLYQQIAEDIRQRIESGELPPGD 29 (236)
T ss_pred ccCccHHHHHHHHHHHHHhCCCCCCC
Confidence 57789999999999999999999765
No 60
>PF08093 Toxin_23: Magi 5 toxic peptide family; InterPro: IPR012628 This family consists of toxic peptides (Magi 5) found in the venom of the Hexathelidae spider. Magi 5 is the first spider toxin with binding affinity to site 4 of a mammalian sodium channel and the toxin has an insecticidal effect on larvae, causing paralysis when injected into the larvae.; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP3_A 1G9P_A 2GX1_A.
Probab=22.04 E-value=44 Score=18.88 Aligned_cols=10 Identities=40% Similarity=1.142 Sum_probs=5.3
Q ss_pred eeCCcc-cccC
Q 047909 69 CKPNTW-CKSK 78 (78)
Q Consensus 69 ~~~~~~-~~~~ 78 (78)
|+-++| |+|+
T Consensus 2 C~l~~~~Cssd 12 (30)
T PF08093_consen 2 CVLTFWRCSSD 12 (30)
T ss_dssp BC-SSSB-SSC
T ss_pred cEeeceeecCC
Confidence 666777 7764
No 61
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=21.82 E-value=57 Score=16.33 Aligned_cols=9 Identities=33% Similarity=0.276 Sum_probs=5.9
Q ss_pred ChhHhHHHH
Q 047909 10 PTHLHSVDG 18 (78)
Q Consensus 10 p~PLhRAak 18 (78)
-||||-|++
T Consensus 3 ~TpLh~A~~ 11 (33)
T PF00023_consen 3 NTPLHYAAQ 11 (33)
T ss_dssp BBHHHHHHH
T ss_pred ccHHHHHHH
Confidence 367887763
No 62
>PF13606 Ank_3: Ankyrin repeat
Probab=21.47 E-value=57 Score=16.73 Aligned_cols=9 Identities=33% Similarity=0.320 Sum_probs=6.2
Q ss_pred ChhHhHHHH
Q 047909 10 PTHLHSVDG 18 (78)
Q Consensus 10 p~PLhRAak 18 (78)
-||||-|++
T Consensus 3 ~T~Lh~A~~ 11 (30)
T PF13606_consen 3 NTPLHLAAS 11 (30)
T ss_pred CCHHHHHHH
Confidence 367888764
No 63
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=21.21 E-value=84 Score=23.97 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.1
Q ss_pred CChhHhHHHHHHHhccccCCCCCc
Q 047909 9 DPTHLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwPQ 32 (78)
++..+.+++++|++.|-.+|-|-.
T Consensus 150 ~~i~~~~~~~~i~scq~~dGGF~~ 173 (316)
T PLN03201 150 DKINVEKAVDYIVSCKNFDGGFGC 173 (316)
T ss_pred chhHHHHHHHHHHHhcCCCCCcCC
Confidence 334578999999999999999964
No 64
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=20.49 E-value=33 Score=23.39 Aligned_cols=21 Identities=10% Similarity=-0.129 Sum_probs=17.8
Q ss_pred HHHhccccCCCCCccceeeeec
Q 047909 19 YILDLQMENGDNPDDTMNIWYA 40 (78)
Q Consensus 19 lLin~QlenGDwPQqeI~G~f~ 40 (78)
+.+|+. .+|.|-+||..|.++
T Consensus 63 VVrNs~-~~g~Wg~eE~~~~~P 83 (143)
T KOG3587|consen 63 VVRNSL-INGEWGLEEREGGNP 83 (143)
T ss_pred EEEecc-cCCccCchhhcCCCC
Confidence 667887 999999999888665
No 65
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=20.31 E-value=60 Score=18.18 Aligned_cols=9 Identities=33% Similarity=0.224 Sum_probs=6.0
Q ss_pred ChhHhHHHH
Q 047909 10 PTHLHSVDG 18 (78)
Q Consensus 10 p~PLhRAak 18 (78)
.||||-|++
T Consensus 17 ~T~LH~A~~ 25 (56)
T PF13857_consen 17 NTPLHWAAR 25 (56)
T ss_dssp --HHHHHHH
T ss_pred CcHHHHHHH
Confidence 489999875
No 66
>TIGR03043 PS_II_psbZ photosystem II core protein PsbZ. PsbZ is a core protein of photosystem II in thylakoid-containing Cyanobacteria and plant chloroplasts. The original Chlamydomonas gene symbol, ycf9, is a synonym. PsbZ controls the interaction of the reaction center core with the light-harvesting antenna.
Probab=20.02 E-value=58 Score=20.42 Aligned_cols=22 Identities=36% Similarity=0.765 Sum_probs=19.1
Q ss_pred hhhheeeeeeeeeeCCcccccC
Q 047909 57 KFRLLVELQVVFCKPNTWCKSK 78 (78)
Q Consensus 57 ~f~l~~~~~~~~~~~~~~~~~~ 78 (78)
-|-|.|-.-|+|-.|+.|-+||
T Consensus 13 Sf~LVVgVPV~~Asp~~W~~sK 34 (58)
T TIGR03043 13 SFVLVVGVPVALASPGGWSRSK 34 (58)
T ss_pred HHHHHhhceeEEeCCCcchhcc
Confidence 4668888999999999998886
Done!