Query 047909
Match_columns 78
No_of_seqs 100 out of 172
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 07:18:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 98.7 3.3E-09 1.1E-13 86.2 2.4 52 3-61 662-714 (732)
2 2sqc_A Squalene-hopene cyclase 98.6 1.3E-08 4.3E-13 80.5 2.8 52 3-61 566-619 (631)
3 1gxm_A Pectate lyase; mechanis 94.5 0.018 6.2E-07 44.5 2.4 25 11-35 97-121 (332)
4 1r76_A Pectate lyase; A-helica 93.8 0.029 9.9E-07 44.4 2.4 25 11-35 175-199 (408)
5 1qqf_A Protein (complement C3D 91.8 0.081 2.8E-06 36.8 2.2 27 7-33 85-112 (277)
6 3dss_B Geranylgeranyl transfer 89.7 0.12 4E-06 38.4 1.5 23 9-31 208-230 (331)
7 2wy7_A Complement C3D fragment 89.6 0.17 5.7E-06 36.0 2.2 27 7-33 101-128 (310)
8 1hzf_A Complement factor C4A; 89.0 0.19 6.4E-06 36.9 2.1 26 7-32 138-163 (367)
9 2wy7_A Complement C3D fragment 88.3 0.12 4.2E-06 36.6 0.7 31 10-40 253-285 (310)
10 2h6f_B Protein farnesyltransfe 85.2 0.32 1.1E-05 37.8 1.6 26 3-30 262-288 (437)
11 1gxm_A Pectate lyase; mechanis 78.7 0.35 1.2E-05 37.3 -0.4 34 7-40 165-202 (332)
12 1qqf_A Protein (complement C3D 77.5 1.5 5E-05 30.4 2.5 29 10-38 237-267 (277)
13 3dss_B Geranylgeranyl transfer 73.4 1.3 4.5E-05 32.8 1.5 25 9-33 160-184 (331)
14 2sqc_A Squalene-hopene cyclase 73.3 1.8 6.1E-05 34.2 2.3 35 12-46 14-48 (631)
15 4acq_A Alpha-2-macroglobulin; 73.2 1.5 5.2E-05 38.3 2.0 26 7-32 1034-1059(1451)
16 2hr0_B Complement C3 alpha' ch 73.0 2.2 7.7E-05 34.9 2.9 26 7-32 346-372 (915)
17 1n4q_B Geranyltransferase type 71.3 0.93 3.2E-05 34.5 0.3 21 4-24 234-256 (377)
18 4fxk_B Complement C4-A alpha c 70.9 3.1 0.0001 33.0 3.2 29 5-33 413-441 (767)
19 1w6k_A Lanosterol synthase; cy 67.0 3 0.0001 34.0 2.4 35 12-46 76-110 (732)
20 2h6f_B Protein farnesyltransfe 66.6 2.4 8.1E-05 32.9 1.7 25 9-33 218-242 (437)
21 2pn5_A TEP1R, thioester-contai 65.4 3.1 0.00011 35.1 2.3 25 8-32 921-945 (1325)
22 1r76_A Pectate lyase; A-helica 65.0 2.2 7.5E-05 33.7 1.2 20 12-31 315-334 (408)
23 1n4q_B Geranyltransferase type 61.9 3.5 0.00012 31.3 1.8 20 13-32 144-163 (377)
24 1hzf_A Complement factor C4A; 57.9 4.8 0.00017 29.4 1.9 20 12-31 92-111 (367)
25 3prx_B Cobra venom factor; imm 55.0 2.5 8.6E-05 37.7 0.0 27 8-34 1079-1106(1642)
26 2hr0_B Complement C3 alpha' ch 49.4 4.1 0.00014 33.4 0.3 30 11-40 499-530 (915)
27 2pn5_A TEP1R, thioester-contai 47.6 3.7 0.00013 34.7 -0.2 32 9-40 1064-1097(1325)
28 3p5p_A Taxadiene synthase; cla 45.6 9.5 0.00033 31.8 2.0 20 14-33 56-75 (764)
29 3s9v_A Abietadiene synthase, c 44.7 10 0.00034 31.8 2.0 20 14-33 77-96 (785)
30 3pya_A ENT-copalyl diphosphate 44.3 10 0.00035 31.7 2.0 20 14-33 53-72 (727)
31 1i26_A PTU-1; Ca channel, assa 44.0 5.9 0.0002 22.1 0.4 10 68-77 19-28 (34)
32 2b39_A C3; thioester, immune d 44.0 12 0.0004 32.8 2.4 26 7-32 1093-1119(1661)
33 3sdr_A Alpha-bisabolene syntha 43.4 11 0.00037 31.8 2.0 20 14-33 104-123 (817)
34 3jyu_A Ubiquitin carboxyl-term 39.9 3.3 0.00011 29.1 -1.3 21 14-34 210-230 (231)
35 3cu7_A Complement C5; Mg domai 39.1 14 0.00048 32.3 2.1 26 7-32 1094-1120(1676)
36 3q7a_B Farnesyltransferase bet 39.1 14 0.00047 30.0 2.0 19 13-31 169-187 (520)
37 1nc5_A Hypothetical protein YT 38.7 17 0.00057 26.5 2.2 38 13-50 243-289 (373)
38 4a3p_A Ubiquitin carboxyl-term 35.5 4.1 0.00014 28.3 -1.4 16 18-33 202-217 (217)
39 1zl8_A LIN-7; heterodimer, alp 30.7 13 0.00044 22.5 0.4 21 13-34 9-29 (53)
40 1xau_A B- and T-lymphocyte att 29.6 18 0.00063 24.8 1.1 15 62-76 34-51 (122)
41 3e6u_A LANC-like protein 1; al 29.4 31 0.0011 25.6 2.4 21 12-32 255-275 (411)
42 1xl7_A COT, peroxisomal carnit 25.5 56 0.0019 26.2 3.3 38 11-49 120-162 (612)
43 2kbw_B BH3-interacting domain 24.7 9.1 0.00031 21.3 -1.0 34 26-62 2-35 (35)
44 4fa8_E Macrophage colony-stimu 24.5 33 0.0011 24.1 1.7 14 16-29 17-30 (147)
45 1lmr_A Toxin ADO1; ICK; NMR {A 24.3 16 0.00055 20.4 0.0 9 68-77 19-27 (35)
46 1nm8_A Carnitine O-acetyltrans 23.7 37 0.0013 27.4 2.0 37 12-49 114-155 (616)
47 2oez_A UPF0289 protein VP2528; 21.0 34 0.0012 25.2 1.2 30 11-40 163-193 (247)
48 4agr_A Galectin; sugar binding 20.9 22 0.00077 24.1 0.2 22 19-40 57-78 (146)
49 1lf6_A Glucoamylase; (alpha/al 20.8 31 0.0011 27.4 1.0 25 9-33 357-381 (684)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=98.72 E-value=3.3e-09 Score=86.15 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=44.3
Q ss_pred CCCCCCCChhHhHHHHHHHhccccCCCCCccceeeeec-cchhhhhhhhhhhhhhhhhhe
Q 047909 3 QKQADRDPTHLHSVDGYILDLQMENGDNPDDTMNIWYA-MCGLLVIMIKNAIVENKFRLL 61 (78)
Q Consensus 3 AGqaerDp~PLhRAaklLin~QlenGDwPQqeI~G~f~-~c~l~y~~yr~a~~~n~f~l~ 61 (78)
+|++ |.++++||+++|+++|.++|+|+|+.++|.|+ .|+++|+.|| |+|||.
T Consensus 662 ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~i~Y~~y~-----~~fpl~ 714 (732)
T 1w6k_A 662 VRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYR-----NIFPIW 714 (732)
T ss_dssp TTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHH-----HHHHHH
T ss_pred cCCC--ChHHHHHHHHHHHHhcCCCCCccCCcccccccchhhhcccchh-----HHHHHH
Confidence 5654 77789999999999999999999999999999 8888877655 567764
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=98.62 E-value=1.3e-08 Score=80.53 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=44.0
Q ss_pred CCCCCCCChhHhHHHHHHHhccccCCCCCccceeee-ec-cchhhhhhhhhhhhhhhhhhe
Q 047909 3 QKQADRDPTHLHSVDGYILDLQMENGDNPDDTMNIW-YA-MCGLLVIMIKNAIVENKFRLL 61 (78)
Q Consensus 3 AGqaerDp~PLhRAaklLin~QlenGDwPQqeI~G~-f~-~c~l~y~~yr~a~~~n~f~l~ 61 (78)
+|+. +..+++||+++|+++|.+||.|+++.++|+ |+ .|+++|+.|| |+|||.
T Consensus 566 ag~~--~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~-----~~f~l~ 619 (631)
T 2sqc_A 566 GGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYR-----HVFPTL 619 (631)
T ss_dssp TTCS--SSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHH-----HHHHHH
T ss_pred cCCC--ChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchh-----hHHHHH
Confidence 4555 456799999999999999999999999998 88 8988888766 567773
No 3
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=94.47 E-value=0.018 Score=44.52 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=22.2
Q ss_pred hhHhHHHHHHHhccccCCCCCccce
Q 047909 11 THLHSVDGYILDLQMENGDNPDDTM 35 (78)
Q Consensus 11 ~PLhRAaklLin~QlenGDwPQqeI 35 (78)
+.+.||+.+|+.+|-+||-|||=..
T Consensus 97 ~Ai~Rgl~wlL~mQ~~nGGWpqFdp 121 (332)
T 1gxm_A 97 DAVRKAANFLVNSQYSTGALPQFYP 121 (332)
T ss_dssp HHHHHHHHHHHHHCCTTSCCBSEES
T ss_pred HHHHHHHHHHHhccCCCCCccccCC
Confidence 4589999999999999999999643
No 4
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=93.80 E-value=0.029 Score=44.37 Aligned_cols=25 Identities=24% Similarity=0.148 Sum_probs=22.4
Q ss_pred hhHhHHHHHHHhccccCCCCCccce
Q 047909 11 THLHSVDGYILDLQMENGDNPDDTM 35 (78)
Q Consensus 11 ~PLhRAaklLin~QlenGDwPQqeI 35 (78)
+.+.||+.+|+.+|.+||-|||=..
T Consensus 175 ~Ai~Rgl~wlL~mQ~~nGGWpqFdp 199 (408)
T 1r76_A 175 DAALKGIEYLLASQFPNGGWPQVWP 199 (408)
T ss_dssp HHHHHHHHHHHHHSCTTSCCBSBSS
T ss_pred HHHHHHHHHHHHccCCCCCCcCcCc
Confidence 4589999999999999999999764
No 5
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=91.82 E-value=0.081 Score=36.79 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCCChhHhHHHHHHH-hccccCCCCCcc
Q 047909 7 DRDPTHLHSVDGYIL-DLQMENGDNPDD 33 (78)
Q Consensus 7 erDp~PLhRAaklLi-n~QlenGDwPQq 33 (78)
..|+..|.||+++|+ +.|.+||.|...
T Consensus 85 ~v~~~~i~~a~~~L~~~~Q~~dG~f~~~ 112 (277)
T 1qqf_A 85 AIDSQVLCGAVKWLILEKQKPDGVFQED 112 (277)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCccCC
Confidence 567778999999999 599999999754
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=89.75 E-value=0.12 Score=38.45 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=19.9
Q ss_pred CChhHhHHHHHHHhccccCCCCC
Q 047909 9 DPTHLHSVDGYILDLQMENGDNP 31 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwP 31 (78)
|+.+++|++++|+++|.++|.|-
T Consensus 208 ~~~~~~~~~~wL~~~Q~~dGGf~ 230 (331)
T 3dss_B 208 HQVNSDLLGWWLCERQLPSGGLN 230 (331)
T ss_dssp GGSCHHHHHHHHHTTBCTTSCBC
T ss_pred chhhHHHHHHHHHHhCCCCCCcC
Confidence 34569999999999999999883
No 7
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=89.63 E-value=0.17 Score=35.96 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.0
Q ss_pred CCCChhHhHHHHHHH-hccccCCCCCcc
Q 047909 7 DRDPTHLHSVDGYIL-DLQMENGDNPDD 33 (78)
Q Consensus 7 erDp~PLhRAaklLi-n~QlenGDwPQq 33 (78)
..|+..|.||+++|+ +.|.+||.|...
T Consensus 101 ~v~~~~i~~a~~~L~~~~Q~~dGsf~~~ 128 (310)
T 2wy7_A 101 AIDSQVLCGAVKWLILEKQKPDGVFQED 128 (310)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCccccC
Confidence 467778999999999 599999999743
No 8
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=88.96 E-value=0.19 Score=36.92 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=22.5
Q ss_pred CCCChhHhHHHHHHHhccccCCCCCc
Q 047909 7 DRDPTHLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 7 erDp~PLhRAaklLin~QlenGDwPQ 32 (78)
..|...|.||+++|.+.|.+||.|..
T Consensus 138 ~v~~~~i~~a~~~L~~~Q~~dG~~~~ 163 (367)
T 1hzf_A 138 GGSPEKLQETSNWLLSQQQADGSFQD 163 (367)
T ss_dssp CCCHHHHHHHHHHHGGGBCTTSCBCC
T ss_pred CCCHHHHHHHHHHHHHhhccCCCccc
Confidence 44667799999999999999999964
No 9
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=88.34 E-value=0.12 Score=36.63 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=26.0
Q ss_pred ChhHhHHHHHHHhccccCCCCC--ccceeeeec
Q 047909 10 PTHLHSVDGYILDLQMENGDNP--DDTMNIWYA 40 (78)
Q Consensus 10 p~PLhRAaklLin~QlenGDwP--QqeI~G~f~ 40 (78)
+....+++++|+++|.++|.|. |+.+.+..+
T Consensus 253 ~~~~~~~v~wL~~qq~~~Ggw~sTq~T~~aL~A 285 (310)
T 2wy7_A 253 FDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQA 285 (310)
T ss_dssp TTTHHHHHHHHHHTTCCCCSTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHccCCCCCeeccHHHHHHHHH
Confidence 4568999999999999999999 888776444
No 10
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=85.16 E-value=0.32 Score=37.75 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.2
Q ss_pred CCCCCCCChhHhHHHHHHHhccc-cCCCC
Q 047909 3 QKQADRDPTHLHSVDGYILDLQM-ENGDN 30 (78)
Q Consensus 3 AGqaerDp~PLhRAaklLin~Ql-enGDw 30 (78)
+|+. |+.+++|++++|+++|+ ++|.|
T Consensus 262 lg~~--~~~~~~rl~~wL~~rQ~~~~GGf 288 (437)
T 2h6f_B 262 LKRE--RSLNLKSLLQWVTSRQMRFEGGF 288 (437)
T ss_dssp HTCG--GGSCHHHHHHHHHHTBCTTTCSB
T ss_pred cCCC--CcccHHHHHHHHHhcCCCCCCCc
Confidence 4554 55679999999999999 88877
No 11
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=78.66 E-value=0.35 Score=37.33 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=28.5
Q ss_pred CCCChhHhHHHHHHHhccccCC----CCCccceeeeec
Q 047909 7 DRDPTHLHSVDGYILDLQMENG----DNPDDTMNIWYA 40 (78)
Q Consensus 7 erDp~PLhRAaklLin~QlenG----DwPQqeI~G~f~ 40 (78)
.++..++.||+.+|++.|.++| -|-||.+.|.+.
T Consensus 165 ~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~qydygT~~ 202 (332)
T 1gxm_A 165 TRFKTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQ 202 (332)
T ss_dssp HHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCC
T ss_pred hhhHHHHHHHHHHHHHhhCccCCCcCeecccccccccc
Confidence 3455679999999999999998 678999998665
No 12
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=77.47 E-value=1.5 Score=30.38 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=23.4
Q ss_pred ChhHhHHHHHHHhccccCCCCC--ccceeee
Q 047909 10 PTHLHSVDGYILDLQMENGDNP--DDTMNIW 38 (78)
Q Consensus 10 p~PLhRAaklLin~QlenGDwP--QqeI~G~ 38 (78)
+....+++++|+++|.++|.|. |..+.+.
T Consensus 237 ~~~~~~~v~wL~~qq~~~Ggw~sTq~T~~aL 267 (277)
T 1qqf_A 237 FDSVPPVVRWLNDERYYGGGYGSTQATFMVF 267 (277)
T ss_dssp TTSHHHHHHHHHHCCCCTTSTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHccCCCCCeecchHHHHHH
Confidence 4568999999999999999997 5555443
No 13
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=73.36 E-value=1.3 Score=32.78 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.5
Q ss_pred CChhHhHHHHHHHhccccCCCCCcc
Q 047909 9 DPTHLHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwPQq 33 (78)
|...++|++++|++.|.+||-|-..
T Consensus 160 ~~~~~~k~v~~L~s~Q~~dGGfg~~ 184 (331)
T 3dss_B 160 DAINVEKAIEFVLSCMNFDGGFGCR 184 (331)
T ss_dssp GGSCHHHHHHHHHTTBCTTSCBCSS
T ss_pred CHHHHHHHHHHHHHhCcCCCCcCCC
Confidence 4556999999999999999999754
No 14
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=73.27 E-value=1.8 Score=34.24 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=25.8
Q ss_pred hHhHHHHHHHhccccCCCCCccceeeeeccchhhh
Q 047909 12 HLHSVDGYILDLQMENGDNPDDTMNIWYAMCGLLV 46 (78)
Q Consensus 12 PLhRAaklLin~QlenGDwPQqeI~G~f~~c~l~y 46 (78)
-|+||+.+|...|.+||-||-|-=...|.++++-.
T Consensus 14 ~~~~~~~~~~~~q~~dG~w~~~~~~~~~~~~~~v~ 48 (631)
T 2sqc_A 14 TLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVL 48 (631)
T ss_dssp HHHHHHHHHHHHCCTTSCCCCCEECCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcccccCCCcchhhHHHHH
Confidence 48999999999999999999554333344555433
No 15
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=73.19 E-value=1.5 Score=38.29 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=23.4
Q ss_pred CCCChhHhHHHHHHHhccccCCCCCc
Q 047909 7 DRDPTHLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 7 erDp~PLhRAaklLin~QlenGDwPQ 32 (78)
..|+..|.||+++|.++|.+||.|..
T Consensus 1034 ~v~~~~l~~a~~wL~~~Q~~dG~f~~ 1059 (1451)
T 4acq_A 1034 FIDEAHITQALIWLSQRQKDNGCFRS 1059 (1451)
T ss_dssp CCCTHHHHHHHHHHHHTEETTTEECC
T ss_pred ccCHHHHHHHHHHHHhhcccCCcccc
Confidence 46788899999999999999999984
No 16
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=73.00 E-value=2.2 Score=34.94 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.5
Q ss_pred CCCChhHhHHHHHHH-hccccCCCCCc
Q 047909 7 DRDPTHLHSVDGYIL-DLQMENGDNPD 32 (78)
Q Consensus 7 erDp~PLhRAaklLi-n~QlenGDwPQ 32 (78)
..|+..|.||+++|. ++|.+||.|..
T Consensus 346 ~v~~~~i~~al~~L~~~~Q~~dG~f~~ 372 (915)
T 2hr0_B 346 AIDSQVLCGAVKWLILEKQKPDGVFQE 372 (915)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred CCCHHHHHHHHHHHHHhhccCCCcccc
Confidence 466778999999999 59999999964
No 17
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=71.30 E-value=0.93 Score=34.54 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=15.9
Q ss_pred CCCCCC-Ch-hHhHHHHHHHhcc
Q 047909 4 KQADRD-PT-HLHSVDGYILDLQ 24 (78)
Q Consensus 4 GqaerD-p~-PLhRAaklLin~Q 24 (78)
|+.+++ |+ +++|++++|++||
T Consensus 234 g~~~~~~~~~~~~rli~wL~~rQ 256 (377)
T 1n4q_B 234 GKLEEVFSEKELNRIKRWCIMRQ 256 (377)
T ss_dssp TCHHHHSCHHHHHHHHHHHHTTB
T ss_pred cCcccccchhhHHHHHHHHHhcC
Confidence 444443 33 7999999999999
No 18
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=70.94 E-value=3.1 Score=33.04 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=25.3
Q ss_pred CCCCCChhHhHHHHHHHhccccCCCCCcc
Q 047909 5 QADRDPTHLHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 5 qaerDp~PLhRAaklLin~QlenGDwPQq 33 (78)
+...|+..|.+|+++|++.|.+||.|+..
T Consensus 413 ~i~id~~~i~~a~~wL~~~Q~~~G~f~e~ 441 (767)
T 4fxk_B 413 QVGGSPEKLQETSNWLLSQQQADGSFQDP 441 (767)
T ss_dssp SSSCCHHHHHHHHHHHHHTBCTTSCBCCS
T ss_pred hcCcchHHHHHHHHHHHHhhhhcccchhc
Confidence 34578888999999999999999999864
No 19
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=66.99 E-value=3 Score=34.03 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=25.9
Q ss_pred hHhHHHHHHHhccccCCCCCccceeeeeccchhhh
Q 047909 12 HLHSVDGYILDLQMENGDNPDDTMNIWYAMCGLLV 46 (78)
Q Consensus 12 PLhRAaklLin~QlenGDwPQqeI~G~f~~c~l~y 46 (78)
-|.||+.+|...|.+||-||-|--.-.|.++++-.
T Consensus 76 a~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~ 110 (732)
T 1w6k_A 76 GALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLI 110 (732)
T ss_dssp HHHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCccccccCchhhhHHHHH
Confidence 38899999999999999999554444444555443
No 20
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=66.55 E-value=2.4 Score=32.91 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=21.6
Q ss_pred CChhHhHHHHHHHhccccCCCCCcc
Q 047909 9 DPTHLHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwPQq 33 (78)
|...+.||+++|++.|.+||-|-..
T Consensus 218 ~~~~v~k~~~~L~s~Q~~DGGwg~~ 242 (437)
T 2h6f_B 218 TPDLFEGTAEWIARCQNWEGGIGGV 242 (437)
T ss_dssp CTTTTTTHHHHHHHHBCTTSSBCSS
T ss_pred ChHHHHHHHHHHHHccCCCCCcCCC
Confidence 4556899999999999999999754
No 21
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=65.35 E-value=3.1 Score=35.09 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.3
Q ss_pred CCChhHhHHHHHHHhccccCCCCCc
Q 047909 8 RDPTHLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 8 rDp~PLhRAaklLin~QlenGDwPQ 32 (78)
.|...|.||+++|.+.|.+||.|..
T Consensus 921 v~~~~l~~a~~~L~~~q~~dG~f~~ 945 (1325)
T 2pn5_A 921 IDAAMVEKALDWLASKQHFSGRFDK 945 (1325)
T ss_dssp SCHHHHHHHHHHHHHTCCTTSCCCC
T ss_pred CCHHHHHHHHHHHHhhhccCCCccc
Confidence 5667799999999999999999965
No 22
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=65.04 E-value=2.2 Score=33.70 Aligned_cols=20 Identities=0% Similarity=-0.064 Sum_probs=15.3
Q ss_pred hHhHHHHHHHhccccCCCCC
Q 047909 12 HLHSVDGYILDLQMENGDNP 31 (78)
Q Consensus 12 PLhRAaklLin~QlenGDwP 31 (78)
.++||+++|.+.|.++|.|-
T Consensus 315 aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 315 AIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHHHHHHHSCCCC----
T ss_pred HHHHHHHHHHHhhcCCCcee
Confidence 49999999999999999997
No 23
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=61.92 E-value=3.5 Score=31.35 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=18.1
Q ss_pred HhHHHHHHHhccccCCCCCc
Q 047909 13 LHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQ 32 (78)
..|++++|.+.|.+||.|--
T Consensus 144 ~~~~~~fL~~~Q~~DGSf~g 163 (377)
T 1n4q_B 144 KEACLAGLRALQLEDGSFCA 163 (377)
T ss_dssp HHHHHHHHHHHBCTTSCBCS
T ss_pred HHHHHHHHHHhcCCCCCeee
Confidence 47899999999999999975
No 24
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=57.86 E-value=4.8 Score=29.37 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=18.1
Q ss_pred hHhHHHHHHHhccccCCCCC
Q 047909 12 HLHSVDGYILDLQMENGDNP 31 (78)
Q Consensus 12 PLhRAaklLin~QlenGDwP 31 (78)
-|.+|+..|++.|.+||.|.
T Consensus 92 ~i~~g~~~ll~~Q~~dGgf~ 111 (367)
T 1hzf_A 92 LIQKGYMRIQQFRKADGSYA 111 (367)
T ss_dssp HHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHhccCCCCCee
Confidence 48899999999999999984
No 25
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=55.04 E-value=2.5 Score=37.73 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCChhHhHHHHHHHh-ccccCCCCCccc
Q 047909 8 RDPTHLHSVDGYILD-LQMENGDNPDDT 34 (78)
Q Consensus 8 rDp~PLhRAaklLin-~QlenGDwPQqe 34 (78)
.|+..|.+|+++|+. +|.+||.|....
T Consensus 1079 Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~ 1106 (1642)
T 3prx_B 1079 ISHEIICGGVRWLILNRQQPDGAFKENA 1106 (1642)
T ss_dssp ----------------------------
T ss_pred CCHHHHHHHHHHHHhhccCCCCcccccc
Confidence 688889999999997 899999997654
No 26
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=49.37 E-value=4.1 Score=33.44 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=25.2
Q ss_pred hhHhHHHHHHHhccccCCCCC--ccceeeeec
Q 047909 11 THLHSVDGYILDLQMENGDNP--DDTMNIWYA 40 (78)
Q Consensus 11 ~PLhRAaklLin~QlenGDwP--QqeI~G~f~ 40 (78)
..+.+++++|++.|..+|.|. |+.+.+..+
T Consensus 499 ~~~~~~v~wL~~qq~~~Ggw~STQdT~~Al~A 530 (915)
T 2hr0_B 499 DFVPPVVRWLNEQRYYGGGYGSTQATFMVFQA 530 (915)
T ss_dssp TTHHHHHHHHHTCCCSSSSCCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccCCCCccchhhHHHHHHH
Confidence 458899999999999999998 887766554
No 27
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=47.62 E-value=3.7 Score=34.69 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=26.5
Q ss_pred CChhHhHHHHHHHhccccCCCCC--ccceeeeec
Q 047909 9 DPTHLHSVDGYILDLQMENGDNP--DDTMNIWYA 40 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwP--QqeI~G~f~ 40 (78)
|...+.+.+++|+..|..+|.|. |+.+.+.++
T Consensus 1064 ~~~~~~~~v~wL~~q~~~~g~w~sTq~T~~aL~A 1097 (1325)
T 2pn5_A 1064 KYTDGIPVMNWLVNQRYVTGSFPSTQDTFVGLKA 1097 (1325)
T ss_dssp CHHHHHHHHHHHHTTCCTTSSCSSHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhccCCCCCccchHHHHHHHHH
Confidence 34467899999999999999999 888876555
No 28
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=45.58 E-value=9.5 Score=31.84 Aligned_cols=20 Identities=10% Similarity=0.239 Sum_probs=17.3
Q ss_pred hHHHHHHHhccccCCCCCcc
Q 047909 14 HSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 14 hRAaklLin~QlenGDwPQq 33 (78)
-....+|++.|++||.|-..
T Consensus 56 p~~~~wil~nQ~~DGsWg~~ 75 (764)
T 3p5p_A 56 PQALNWVFNNQLQDGSWGIE 75 (764)
T ss_dssp HHHHHHHHHCCCTTSCCSCT
T ss_pred hHHHHHHHHccCCCCCCCCC
Confidence 35899999999999999754
No 29
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=44.74 E-value=10 Score=31.82 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=17.9
Q ss_pred hHHHHHHHhccccCCCCCcc
Q 047909 14 HSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 14 hRAaklLin~QlenGDwPQq 33 (78)
-....+|++.|++||.|-..
T Consensus 77 p~~~~wil~nQ~~DGsWg~~ 96 (785)
T 3s9v_A 77 PETVEWILQNQLKDGSWGEG 96 (785)
T ss_dssp HHHHHHHHHCCCTTSCCSCS
T ss_pred hHHHHHHHHccCCCCCCCCC
Confidence 57899999999999999754
No 30
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=44.30 E-value=10 Score=31.67 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.5
Q ss_pred hHHHHHHHhccccCCCCCcc
Q 047909 14 HSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 14 hRAaklLin~QlenGDwPQq 33 (78)
-....+|++.|++||.|-..
T Consensus 53 p~~~~wil~nQ~~DGsWG~~ 72 (727)
T 3pya_A 53 PSAVKWIAENQLSDGSWGDA 72 (727)
T ss_dssp HHHHHHHHHTCCTTSCCSCS
T ss_pred HHHHHHHHhcCCCCCCCCCC
Confidence 46899999999999999754
No 31
>1i26_A PTU-1; Ca channel, assassin BUG, toxin; NMR {Peirates turpis} SCOP: g.3.6.3
Probab=44.04 E-value=5.9 Score=22.13 Aligned_cols=10 Identities=50% Similarity=1.597 Sum_probs=8.3
Q ss_pred eeeCCccccc
Q 047909 68 FCKPNTWCKS 77 (78)
Q Consensus 68 ~~~~~~~~~~ 77 (78)
-|.|.+||.|
T Consensus 19 cc~pr~~c~~ 28 (34)
T 1i26_A 19 CCNPRAWCSS 28 (34)
T ss_dssp BSSTTCCEET
T ss_pred ccCchhHHHH
Confidence 4889999976
No 32
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=44.03 E-value=12 Score=32.80 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.8
Q ss_pred CCCChhHhHHHHHHH-hccccCCCCCc
Q 047909 7 DRDPTHLHSVDGYIL-DLQMENGDNPD 32 (78)
Q Consensus 7 erDp~PLhRAaklLi-n~QlenGDwPQ 32 (78)
..|+..|.+|.++|. ++|.++|.|..
T Consensus 1093 ~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1119 (1661)
T 2b39_A 1093 AIDSKDLCETVKWLILEKQKPDGIFQE 1119 (1661)
T ss_dssp CCCHHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred cCCHHHHHHHHHHhhHhhCCCCCcccc
Confidence 467788999999999 59999999964
No 33
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=43.44 E-value=11 Score=31.78 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.9
Q ss_pred hHHHHHHHhccccCCCCCcc
Q 047909 14 HSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 14 hRAaklLin~QlenGDwPQq 33 (78)
-....+|++.|++||.|-..
T Consensus 104 p~~~~wil~nQ~~DGsWg~~ 123 (817)
T 3sdr_A 104 PQTVDWILKNQLKDGSWGIQ 123 (817)
T ss_dssp HHHHHHHHHCCCTTSCCSCT
T ss_pred hHHHHHHHHccCCCCCCCCC
Confidence 67899999999999999754
No 34
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=39.92 E-value=3.3 Score=29.09 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=14.1
Q ss_pred hHHHHHHHhccccCCCCCccc
Q 047909 14 HSVDGYILDLQMENGDNPDDT 34 (78)
Q Consensus 14 hRAaklLin~QlenGDwPQqe 34 (78)
...-.+||.-+-+||.||.|.
T Consensus 210 ~~~Q~illE~r~~dg~WP~~~ 230 (231)
T 3jyu_A 210 YQGQVLVIEPQNEDGTWPRQS 230 (231)
T ss_dssp CTTEEEEEEECCTTSCCCC--
T ss_pred CCCCEEEEEEecCCCCCCccc
Confidence 334445777778999999985
No 35
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=39.14 E-value=14 Score=32.28 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=23.0
Q ss_pred CCCChhHhHHHHHHHh-ccccCCCCCc
Q 047909 7 DRDPTHLHSVDGYILD-LQMENGDNPD 32 (78)
Q Consensus 7 erDp~PLhRAaklLin-~QlenGDwPQ 32 (78)
..|+..|.+|.++|.+ +|.+||.|..
T Consensus 1094 ~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1094 EQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp CCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence 4677889999999998 9999999964
No 36
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=39.14 E-value=14 Score=30.01 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=17.1
Q ss_pred HhHHHHHHHhccccCCCCC
Q 047909 13 LHSVDGYILDLQMENGDNP 31 (78)
Q Consensus 13 LhRAaklLin~QlenGDwP 31 (78)
.++++++|.+.|.+||.|-
T Consensus 169 r~k~v~fL~slQ~~DGSF~ 187 (520)
T 3q7a_B 169 RQSIYEFFMRCKRPDGGFV 187 (520)
T ss_dssp HHHHHHHHHHHBCTTSCBB
T ss_pred HHHHHHHHHHHhCCCCCEe
Confidence 5689999999999999984
No 37
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=38.69 E-value=17 Score=26.46 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=26.6
Q ss_pred HhHHHHHHHhcccc-CCCCCc----cceeeeec----cchhhhhhhh
Q 047909 13 LHSVDGYILDLQME-NGDNPD----DTMNIWYA----MCGLLVIMIK 50 (78)
Q Consensus 13 LhRAaklLin~Qle-nGDwPQ----qeI~G~f~----~c~l~y~~yr 50 (78)
+.+-++.|++.|.+ +|-|.| .+..|.|. .+++-|.+++
T Consensus 243 ~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~ 289 (373)
T 1nc5_A 243 LQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAK 289 (373)
T ss_dssp HHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHH
Confidence 56678899999996 999995 22335554 4666676666
No 38
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=35.54 E-value=4.1 Score=28.29 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=10.8
Q ss_pred HHHHhccccCCCCCcc
Q 047909 18 GYILDLQMENGDNPDD 33 (78)
Q Consensus 18 klLin~QlenGDwPQq 33 (78)
.+||.-+.+||.||+|
T Consensus 202 ~illE~r~~dg~WP~~ 217 (217)
T 4a3p_A 202 VLVIEQKNEDGTWPRG 217 (217)
T ss_dssp EEEEEECCCC-CCCC-
T ss_pred EEEEEEecCCCCCCCC
Confidence 4566677799999986
No 39
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=30.66 E-value=13 Score=22.48 Aligned_cols=21 Identities=5% Similarity=0.191 Sum_probs=16.6
Q ss_pred HhHHHHHHHhccccCCCCCccc
Q 047909 13 LHSVDGYILDLQMENGDNPDDT 34 (78)
Q Consensus 13 LhRAaklLin~QlenGDwPQqe 34 (78)
+.||+.+|-.- +.+|+.|-+-
T Consensus 9 v~RaiELle~l-q~sgevp~~K 29 (53)
T 1zl8_A 9 VQRILELMEHV-QKTGEVNNAK 29 (53)
T ss_dssp HHHHHHHHHHH-GGGSSSTHHH
T ss_pred HHHHHHHHHHH-HHcCCCCcHH
Confidence 78999987776 5789998654
No 40
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=29.63 E-value=18 Score=24.75 Aligned_cols=15 Identities=60% Similarity=1.526 Sum_probs=9.3
Q ss_pred eeeeeeee--eCC-cccc
Q 047909 62 VELQVVFC--KPN-TWCK 76 (78)
Q Consensus 62 ~~~~~~~~--~~~-~~~~ 76 (78)
.|--|.+| +|| ||||
T Consensus 34 LeCpv~yc~~rPnVtWcK 51 (122)
T 1xau_A 34 IECPVKYCVHRPNVTWCK 51 (122)
T ss_dssp EEEEEECSSSCCCEEEEE
T ss_pred EEeEecCCCCCCcEEEEe
Confidence 34455677 454 7887
No 41
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=29.36 E-value=31 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=18.9
Q ss_pred hHhHHHHHHHhccccCCCCCc
Q 047909 12 HLHSVDGYILDLQMENGDNPD 32 (78)
Q Consensus 12 PLhRAaklLin~QlenGDwPQ 32 (78)
-+.++++++++.+.++|.||.
T Consensus 255 ~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 255 LVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp THHHHHHHHHHTCCTTSCCCS
T ss_pred HHHHHHHHHHHhhccCCCCCC
Confidence 378899999999999999997
No 42
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=25.49 E-value=56 Score=26.17 Aligned_cols=38 Identities=11% Similarity=-0.074 Sum_probs=29.7
Q ss_pred hhHhHHHHHHHh-----ccccCCCCCccceeeeeccchhhhhhh
Q 047909 11 THLHSVDGYILD-----LQMENGDNPDDTMNIWYAMCGLLVIMI 49 (78)
Q Consensus 11 ~PLhRAaklLin-----~QlenGDwPQqeI~G~f~~c~l~y~~y 49 (78)
+.+.|||+++.. +.+++|+.|.+.+ |-.+.||-.|...
T Consensus 120 ~q~~rAA~li~~~l~f~~~l~~~~L~p~~~-~~~PlcM~Qy~~l 162 (612)
T 1xl7_A 120 TQLERGSMMLWHNLNYWQLLRREKLPVHKS-GNTPLDMNQFRML 162 (612)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSCCCEE-TTEECCCGGGGGT
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCcchhhc-CCccccHHHHHHh
Confidence 479999998764 6899999998876 5577888776543
No 43
>2kbw_B BH3-interacting domain death agonist; MCL-1, BID_BH3, complex, alternative splicing, apoptosis, CY developmental protein, differentiation, membrane; NMR {Homo sapiens}
Probab=24.66 E-value=9.1 Score=21.29 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=21.0
Q ss_pred cCCCCCccceeeeeccchhhhhhhhhhhhhhhhhhee
Q 047909 26 ENGDNPDDTMNIWYAMCGLLVIMIKNAIVENKFRLLV 62 (78)
Q Consensus 26 enGDwPQqeI~G~f~~c~l~y~~yr~a~~~n~f~l~~ 62 (78)
|-|.|+||+|.=- =.++-+.+.++.+.+|=|.+|
T Consensus 2 e~dse~qe~~i~~---ia~qla~igd~~d~~i~p~lv 35 (35)
T 2kbw_B 2 PLGSESQEDIIRN---IARHLAQVGDSMDRSIPPGLV 35 (35)
T ss_dssp ---CCCHHHHHHH---HHHHHHHHHHHHHHSCTTTTC
T ss_pred CCCcccchhHHHH---HHHHccchhhhhhcccCCccC
Confidence 4578888887442 234556777788888877654
No 44
>4fa8_E Macrophage colony-stimulating factor 1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3uf2_A 3uez_E 4adf_G* 1hmc_A 3ejj_A* 3uf5_A 4adq_E*
Probab=24.52 E-value=33 Score=24.09 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=12.0
Q ss_pred HHHHHHhccccCCC
Q 047909 16 VDGYILDLQMENGD 29 (78)
Q Consensus 16 AaklLin~QlenGD 29 (78)
.++-||++||++|-
T Consensus 17 ~L~~LIdsQm~~~c 30 (147)
T 4fa8_E 17 SLQRLIDSQMETSC 30 (147)
T ss_dssp HHHHHHHHSCCCCC
T ss_pred HHHHHHHHHhhcCc
Confidence 57889999999983
No 45
>1lmr_A Toxin ADO1; ICK; NMR {Agriosphodrus dohrni} SCOP: g.3.6.3
Probab=24.25 E-value=16 Score=20.42 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=6.2
Q ss_pred eeeCCccccc
Q 047909 68 FCKPNTWCKS 77 (78)
Q Consensus 68 ~~~~~~~~~~ 77 (78)
-|+| |||.+
T Consensus 19 CC~~-t~C~~ 27 (35)
T 1lmr_A 19 CCKG-TTCMF 27 (35)
T ss_dssp CCTT-EEEET
T ss_pred ccCc-hhHHH
Confidence 3666 88865
No 46
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=23.69 E-value=37 Score=27.36 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=29.6
Q ss_pred hHhHHHHHHHh-----ccccCCCCCccceeeeeccchhhhhhh
Q 047909 12 HLHSVDGYILD-----LQMENGDNPDDTMNIWYAMCGLLVIMI 49 (78)
Q Consensus 12 PLhRAaklLin-----~QlenGDwPQqeI~G~f~~c~l~y~~y 49 (78)
.+.|||+++.. +++++|+.|.+.+ |-.+.||-.|..+
T Consensus 114 q~~rAA~li~~~l~f~~~l~~~~L~p~~~-~~~PLcM~Qy~~l 155 (616)
T 1nm8_A 114 QLRFAAKLIEGVLDFKVMIDNETLPVEYL-GGKPLCMNQYYQI 155 (616)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEE-TTEECCCGGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcChhhc-CCccccHHHHHHh
Confidence 59999988764 5899999999876 6677888776644
No 47
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=21.00 E-value=34 Score=25.19 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=26.5
Q ss_pred hhHhHHHHHHHhccccCCCC-Cccceeeeec
Q 047909 11 THLHSVDGYILDLQMENGDN-PDDTMNIWYA 40 (78)
Q Consensus 11 ~PLhRAaklLin~QlenGDw-PQqeI~G~f~ 40 (78)
.||..|+.++++---++|.| ++..-.|+|-
T Consensus 163 ~pl~~al~liL~LlR~s~~~~~~~A~~GfyQ 193 (247)
T 2oez_A 163 KPLSDALTLWLKLARETGHFKAQIARAGFFQ 193 (247)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEEEBTTEEE
T ss_pred HHHHHHHHHHHHHHHhcCCcceeeECCCccc
Confidence 58999999999999999999 6667788887
No 48
>4agr_A Galectin; sugar binding protein; 2.10A {Cinachyrella} PDB: 4agg_A 4agv_A
Probab=20.88 E-value=22 Score=24.06 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=14.3
Q ss_pred HHHhccccCCCCCccceeeeec
Q 047909 19 YILDLQMENGDNPDDTMNIWYA 40 (78)
Q Consensus 19 lLin~QlenGDwPQqeI~G~f~ 40 (78)
+..|+.+.+|.|=+||-.+.|+
T Consensus 57 IV~NS~~~~G~WG~EER~~~~P 78 (146)
T 4agr_A 57 LVLNSKFAGGEWGPEVRPEGFP 78 (146)
T ss_dssp EEEEEEC----CCCCBCCSCCC
T ss_pred EEECCcccCCccCCccEecCCC
Confidence 3568889999999999988665
No 49
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=20.80 E-value=31 Score=27.43 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=20.0
Q ss_pred CChhHhHHHHHHHhccccCCCCCcc
Q 047909 9 DPTHLHSVDGYILDLQMENGDNPDD 33 (78)
Q Consensus 9 Dp~PLhRAaklLin~QlenGDwPQq 33 (78)
++.-..+..++|.+.|.++|.|+|.
T Consensus 357 ~~~~a~~~l~~l~~~q~~~G~~~~~ 381 (684)
T 1lf6_A 357 DVDSANRSLDYLAKVVKDNGMIPQN 381 (684)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSCCSC
T ss_pred CHHHHHHHHHHHHhhcCCCCCcccc
Confidence 3444678889999999999999763
Done!