BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047910
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 67/122 (54%)
Query: 13 QSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDL 72
+S F E ILD+ QL+Q++ S+P V ++ +DS + L + + V++ +
Sbjct: 20 KSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKV 79
Query: 73 DKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQAYL 132
D + HQLK SS+ IGA +V N C+++N+EA +++K E+ +K +L+
Sbjct: 80 DPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLF 139
Query: 133 EV 134
++
Sbjct: 140 KL 141
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 3 ALRQQISAMRQSFFDEDILDTHIFQLEQV-EHISDPSLFEDFVNVYLRDSTKTLAIIEEE 61
ALR+Q++A+ S F ++D QL+ + E P + V ++ D+ + ++ +
Sbjct: 5 ALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISELAAL 64
Query: 62 IANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEH 121
+ V++ +D Y HQLK SS +GA KV + +LC+++N + + ++ E
Sbjct: 65 LDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVVRNEF 124
Query: 122 TTLKTKLQAYL 132
L+ K Q L
Sbjct: 125 YDLRNKFQTML 135
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%)
Query: 4 LRQQISAMRQSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIA 63
+R+Q +S F E LD QL+Q++ ++P + V+++ DS + L + +
Sbjct: 6 MRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVD 65
Query: 64 NNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTT 123
+++ +D + HQ K SS IGA +V N C+E+N++A + +++K E+
Sbjct: 66 QQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLL 125
Query: 124 LKTKLQAYLEV 134
+K KL+ L +
Sbjct: 126 VKNKLETLLRL 136
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 3 ALRQQISAMRQSFFDEDILDTHIFQLEQVE-HISDPSLFEDFVNVYLRDSTKTLAIIEEE 61
ALR Q++A+ S F + ++D QL+ ++ P + V ++ D+ + + I
Sbjct: 5 ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64
Query: 62 IANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEH 121
+ VN+ +D Y HQLK SS +GA KV + + C++++ + + ++ +
Sbjct: 65 LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDF 124
Query: 122 TTLKTKLQAYLEV 134
L+ K Q L++
Sbjct: 125 YDLRNKFQTMLQL 137
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 26 FQLEQVEHISD-PSLFEDFVNVYLRDSTKTLAII----EEEIANNPVNYMDLDKYFHQLK 80
F + EH+ D P+L FV + D +I + + + +Y D D +++
Sbjct: 54 FATGRREHLKDHPNL--TFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYND-- 109
Query: 81 SSSNCIGANKVVNEAKK 97
+ +NC+G + VV AKK
Sbjct: 110 TLTNCVGGSNVVQAAKK 126
>pdb|2NRA|C Chain C, Crystal Structure Of Pi Initiator Protein In Complex With
Iteron Dna
Length = 276
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 76 FHQLKSSSNCIGANKVVNEAKKAIELCKEEN-LEAAKASFEKM 117
+ QLK +GA+K+ I L KE N L AK S E++
Sbjct: 74 YRQLKEGGKLLGASKISLRGDDIIALAKELNLLSTAKNSSEEL 116
>pdb|1H1N|A Chain A, Atomic Resolution Structure Of The Major Endoglucanase
From Thermoascus Aurantiacus
pdb|1H1N|B Chain B, Atomic Resolution Structure Of The Major Endoglucanase
From Thermoascus Aurantiacus
Length = 305
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 20 ILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQL 79
++D H + IS PS FE F KT+A + A+NP+ D D +H +
Sbjct: 89 VVDPHNYGRYYNSIISSPSDFETFW--------KTVA---SQFASNPLVIFDTDNEYHDM 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,460,234
Number of Sequences: 62578
Number of extensions: 124084
Number of successful extensions: 522
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 25
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)