BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047910
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis
thaliana GN=AHP4 PE=1 SV=2
Length = 127
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 65/117 (55%)
Query: 18 EDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFH 77
+ LD +LE+++ ++P+ E+ +Y +DS + + I++ + ++ LD Y H
Sbjct: 9 QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 68
Query: 78 QLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQAYLEV 134
Q K SS IGA+KV E E C+ N E +F+++K EH+TL+ KL+ Y +
Sbjct: 69 QFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQA 125
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis
thaliana GN=AHP1 PE=1 SV=1
Length = 154
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 67/122 (54%)
Query: 13 QSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDL 72
+S F E ILD+ QL+Q++ S+P V ++ +DS + L + + V++ +
Sbjct: 15 KSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKV 74
Query: 73 DKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQAYL 132
D + HQLK SS+ IGA +V N C+++N+EA +++K E+ +K +L+
Sbjct: 75 DPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLF 134
Query: 133 EV 134
++
Sbjct: 135 KL 136
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa
subsp. japonica GN=HP1 PE=1 SV=1
Length = 149
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 3 ALRQQISAMRQSFFDEDILDTHIFQLEQVE-HISDPSLFEDFVNVYLRDSTKTLAIIEEE 61
ALR Q++A+ S F + ++D QL+ ++ P + V ++ D+ + + I
Sbjct: 5 ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64
Query: 62 IANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEH 121
+ VN+ +D Y HQLK SS +GA KV + + C++++ + + ++ +
Sbjct: 65 LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDF 124
Query: 122 TTLKTKLQAYLEV 134
L+ K Q L++
Sbjct: 125 YDLRNKFQTMLQL 137
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis
thaliana GN=AHP5 PE=1 SV=2
Length = 157
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 14 SFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTK---TLAIIEEEIANNPVNYM 70
S + + LD +L +++ P + V+++ D +K T++I E N V++
Sbjct: 19 SLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISLERPDN--VDFK 76
Query: 71 DLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQ 129
+D HQLK SS+ +GA +V N E C +N E +++ E+ LKTKLQ
Sbjct: 77 QVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYEYKMLKTKLQ 135
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis
thaliana GN=AHP2 PE=1 SV=1
Length = 156
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Query: 4 LRQQISAMRQSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEI- 62
L++Q S + + LD +L++++ P + ++++ D K ++ + +
Sbjct: 8 LQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALD 67
Query: 63 ANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHT 122
V++ + HQLK SS+ +GA +V E C+ +N E +++ +E+
Sbjct: 68 TTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYK 127
Query: 123 TLKTKLQ 129
LKTKLQ
Sbjct: 128 ALKTKLQ 134
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis
thaliana GN=AHP3 PE=1 SV=2
Length = 155
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 14 SFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEI-ANNPVNYMDL 72
S + + LD +L++++ P + V ++ D K ++ + + V++ +
Sbjct: 18 SLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALDQTGNVDFKLV 77
Query: 73 DKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQ 129
HQLK SS+ +GA +V E C +N E +++ +E+ TLK KLQ
Sbjct: 78 GSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEYKTLKAKLQ 134
>sp|B6ENT1|MURI_ALISL Glutamate racemase OS=Aliivibrio salmonicida (strain LFI1238)
GN=murI PE=3 SV=1
Length = 265
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 40 FEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCI 86
F +V L ST+ + + EE++ PVN ++LD+ K +CI
Sbjct: 130 FASISDVKLLGSTRLVEMAEEKMVGIPVNLIELDEILKSWKGQVDCI 176
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 25/95 (26%)
Query: 15 FFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRD-----------------------S 51
+F++ +DT ++E + SDP++ F R+
Sbjct: 61 YFNKSFIDTARIEVEFAKTFSDPTVPLSFKEKRKREEQKLKDEQERLLEQELRAQAKKQK 120
Query: 52 TKTLAIIEEEIANNP--VNYMDLDKYFHQLKSSSN 84
TK+ + I++EIA+NP YM++ K HQ+KS +N
Sbjct: 121 TKSTSEIDDEIASNPKLREYMEVMKPSHQVKSWAN 155
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana
sylvestris GN=RPOT1 PE=2 SV=1
Length = 1002
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 32 EHISDPSLFEDFVNVYLRDSTKT--LAIIEEEIANNPVNYMDLDKYFHQLKSS------- 82
E ++P+L +++ R S K L I EE + NP + + F +K
Sbjct: 44 ESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKR 103
Query: 83 -SNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQ 129
S +G + A +AI EE+++ + E+M E+ LKT LQ
Sbjct: 104 GSGSLGFLRSYGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNLQ 151
>sp|A1W9H4|RF2_ACISJ Peptide chain release factor 2 OS=Acidovorax sp. (strain JS42)
GN=prfB PE=3 SV=1
Length = 367
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 69 YMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKE-ENLEAAKASFEKMKVE 120
Y+D D F +L++ + + V N+ KKA EL KE ++L+A + +K+ E
Sbjct: 26 YLDYDAKFERLRTVNASLEDPAVWNDPKKAQELGKEKKSLDAVVLTLQKLTTE 78
>sp|B9MBK7|RF2_ACIET Peptide chain release factor 2 OS=Acidovorax ebreus (strain TPSY)
GN=prfB PE=3 SV=1
Length = 367
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 69 YMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKE-ENLEAAKASFEKMKVE 120
Y+D D F +L++ + + V N+ KKA EL KE ++L+A + +K+ E
Sbjct: 26 YLDYDAKFERLRTVNASLEDPAVWNDPKKAQELGKEKKSLDAVVLTLQKLTTE 78
>sp|P77279|YBBL_ECOLI Uncharacterized ABC transporter ATP-binding protein YbbL
OS=Escherichia coli (strain K12) GN=ybbL PE=1 SV=1
Length = 225
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 2 EALRQQIS--AMRQSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVY-LRDSTKTLAII 58
E RQQ+S A + F + + D IF + DP++F DF+ + L DS T I
Sbjct: 77 EIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNRQPDPAIFLDFLERFALPDSILTKNIA 136
Query: 59 E 59
E
Sbjct: 137 E 137
>sp|Q3SGF0|SYGB_THIDA Glycine--tRNA ligase beta subunit OS=Thiobacillus denitrificans
(strain ATCC 25259) GN=glyS PE=3 SV=1
Length = 701
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 61 EIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVE 120
E A +P+ D D Y QL+S I N A++ E+ ++ LEAA A + VE
Sbjct: 201 EAAADPIVLKDADSYAQQLESEGAVIA-----NFAERRAEIVRQ--LEAAAAPLGLVPVE 253
Query: 121 HTTLKTKLQAYLE 133
L ++ A +E
Sbjct: 254 DEALLDEVTALVE 266
>sp|B3GXZ2|PURT_ACTP7 Phosphoribosylglycinamide formyltransferase 2 OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=purT PE=3
SV=1
Length = 393
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 46 VYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEE 105
+Y + AI+ E +NN + + +LDK ++ ++ G +V + + L ++E
Sbjct: 315 IYQISPAASKAIVVEGKSNN-MTFGNLDKVLEEIGTNIRLFGKGEVNGHRRLGVILARDE 373
Query: 106 NLEAAKASFEK 116
N E A A E+
Sbjct: 374 NTEKALAKAER 384
>sp|A3N1B2|PURT_ACTP2 Phosphoribosylglycinamide formyltransferase 2 OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=purT PE=3
SV=1
Length = 393
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 46 VYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEE 105
+Y + AI+ E +NN + + +LDK ++ ++ G +V + + L ++E
Sbjct: 315 IYQISPAASKAIVVEGKSNN-MTFGNLDKVLEEIGTNIRLFGKGEVNGHRRLGVILARDE 373
Query: 106 NLEAAKASFEK 116
N E A A E+
Sbjct: 374 NTEKALAKAER 384
>sp|B0BQ46|PURT_ACTPJ Phosphoribosylglycinamide formyltransferase 2 OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=purT PE=3
SV=1
Length = 393
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 46 VYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEE 105
+Y + AI+ E +NN + + +LDK ++ ++ G +V + + L ++E
Sbjct: 315 IYQISPAASKAIVVEGKSNN-MTFGNLDKVLEEIGTNIRLFGKGEVNGHRRLGVILARDE 373
Query: 106 NLEAAKASFEK 116
N E A A E+
Sbjct: 374 NTEKALAKAER 384
>sp|A4IRU1|EZRA_GEOTN Septation ring formation regulator EzrA OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=ezrA PE=3 SV=1
Length = 567
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 68 NYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTK 127
Y ++K HQL+ I V EAK A L +EE LE + MK EH +
Sbjct: 347 KYRSIEKQMHQLQKRFLLI--EDRVAEAKTAYSLLREE-LEQLVGQIDMMKEEHEQFRLM 403
Query: 128 LQA 130
LQA
Sbjct: 404 LQA 406
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,264,352
Number of Sequences: 539616
Number of extensions: 1644649
Number of successful extensions: 6532
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 6503
Number of HSP's gapped (non-prelim): 70
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)