Query 047910
Match_columns 135
No_of_seqs 111 out of 384
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:19:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 2E-37 6.7E-42 227.5 13.0 133 2-134 4-136 (153)
2 1yvi_A Histidine-containing ph 100.0 4.7E-36 1.6E-40 218.7 13.0 133 2-134 4-137 (149)
3 2r25_A Phosphorelay intermedia 100.0 2.9E-30 1E-34 191.6 11.7 118 14-134 2-165 (167)
4 2a0b_A HPT domain; sensory tra 99.9 1.1E-23 3.7E-28 148.4 9.5 114 15-133 6-120 (125)
5 3myf_A Sensor protein; HPT, hi 99.8 7.3E-20 2.5E-24 128.7 11.2 113 16-133 1-114 (119)
6 1y6d_A Phosphorelay protein LU 99.8 5.8E-22 2E-26 139.6 -2.0 110 19-132 10-119 (120)
7 3iqt_A Signal transduction his 99.8 3.3E-19 1.1E-23 126.2 9.1 111 18-133 12-123 (123)
8 2ooc_A Histidine phosphotransf 99.7 1.2E-18 4.1E-23 121.5 5.4 101 18-133 8-108 (113)
9 1sr2_A Putative sensor-like hi 99.7 7.1E-17 2.4E-21 113.1 6.7 88 35-124 28-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.6 1.6E-15 5.5E-20 103.4 6.6 92 40-131 3-103 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 1.2E-13 4.2E-18 99.0 6.1 90 41-130 3-101 (139)
12 1i5n_A Chemotaxis protein CHEA 99.4 1.8E-13 6.3E-18 98.9 5.5 90 41-130 6-104 (146)
13 2lch_A Protein OR38; structura 99.4 3E-13 1E-17 93.5 5.5 91 41-131 5-104 (113)
14 3kyj_A CHEA3, putative histidi 99.0 4.3E-10 1.5E-14 81.2 6.1 89 40-128 9-106 (144)
15 2lp4_A Chemotaxis protein CHEA 98.7 3.9E-08 1.3E-12 75.2 7.3 88 41-128 6-102 (225)
16 2cw9_A Translocase of inner mi 87.3 3.7 0.00012 30.0 8.3 82 5-105 22-104 (194)
17 2di0_A Activating signal coint 71.0 4.5 0.00015 25.3 3.4 44 17-60 9-52 (71)
18 1gp8_A Protein (scaffolding pr 69.6 10 0.00036 20.9 4.3 22 58-81 17-38 (40)
19 2kmf_A Photosystem II 11 kDa p 69.4 15 0.0005 25.0 6.0 86 44-130 13-113 (115)
20 3qk9_A Mitochondrial import in 67.8 5.3 0.00018 30.1 3.8 55 36-105 72-127 (222)
21 3err_A Fusion protein of micro 65.2 34 0.0012 28.9 8.7 87 36-132 117-207 (536)
22 3bvo_A CO-chaperone protein HS 62.9 29 0.001 25.5 7.1 26 103-129 176-201 (207)
23 3ls0_A SLL1638 protein, PSBQ; 60.3 40 0.0014 23.4 9.7 30 48-79 32-62 (133)
24 3uo3_A J-type CO-chaperone JAC 55.5 54 0.0019 23.5 7.5 41 89-130 132-172 (181)
25 4igg_A Catenin alpha-1; asymme 50.3 1.4E+02 0.0048 26.7 10.6 125 3-130 258-419 (832)
26 1wjt_A Transcription elongatio 49.6 10 0.00035 25.1 2.4 32 88-119 11-42 (103)
27 2y6x_A PSB27, photosystem II 1 48.9 59 0.002 21.9 7.9 85 45-130 10-109 (113)
28 3zta_A MTR, anti-sigma-factor 47.5 20 0.00067 24.3 3.5 64 4-84 58-121 (146)
29 2nsz_A Programmed cell death p 45.2 46 0.0016 22.3 5.2 43 2-47 4-46 (129)
30 1fpo_A HSC20, chaperone protei 44.3 81 0.0028 22.2 6.9 41 89-130 123-163 (171)
31 3ay5_A Cyclin-D1-binding prote 44.2 49 0.0017 26.4 6.0 79 49-134 282-360 (360)
32 3hho_A CO-chaperone protein HS 43.8 83 0.0028 22.2 6.9 42 69-118 115-156 (174)
33 2f4m_B UV excision repair prot 41.0 31 0.0011 20.7 3.4 36 24-60 12-47 (61)
34 2p1h_A APAF-1, apoptotic prote 39.0 48 0.0016 20.6 4.3 64 8-75 24-88 (94)
35 3do9_A UPF0302 protein BA_1542 37.6 35 0.0012 25.0 3.8 28 52-81 152-179 (188)
36 2ion_A PDCD4, programmed cell 36.9 70 0.0024 22.2 5.2 43 2-47 6-48 (152)
37 3a7m_A Flagellar protein FLIT; 36.4 95 0.0033 20.8 5.7 36 89-128 12-47 (122)
38 3oj5_A Ferritin family protein 31.8 1.3E+02 0.0045 21.0 6.9 75 18-92 99-177 (189)
39 1h3o_B Transcription initiatio 31.6 79 0.0027 19.7 4.3 48 6-64 9-56 (76)
40 3edv_A Spectrin beta chain, br 30.9 1.6E+02 0.0056 21.8 9.4 85 44-128 115-208 (323)
41 2vs0_A Virulence factor ESXA; 30.1 93 0.0032 18.7 5.8 20 67-86 6-25 (97)
42 2rg8_A Programmed cell death p 30.0 1.4E+02 0.0048 20.8 7.7 47 3-49 8-55 (165)
43 3h3m_A Flagellar protein FLIT; 28.1 1.4E+02 0.0048 20.2 6.1 37 89-129 25-61 (126)
44 3fkr_A L-2-keto-3-deoxyarabona 27.1 71 0.0024 24.6 4.3 40 80-119 210-249 (309)
45 3nkz_A Flagellar protein FLIT; 26.7 1.2E+02 0.0042 20.3 4.9 21 90-110 16-36 (123)
46 4ioe_A Secreted protein ESXB; 26.4 1.1E+02 0.0038 18.4 5.2 34 67-101 9-42 (93)
47 2wx3_A MRNA-decapping enzyme 1 26.2 22 0.00076 20.7 0.9 24 35-58 26-49 (51)
48 2wx4_A DCP1, decapping protein 26.2 28 0.00095 19.9 1.3 21 35-55 24-44 (46)
49 1vyk_A Oxygen-evolving enhance 25.8 1.7E+02 0.0059 20.4 9.4 38 89-126 109-146 (149)
50 3zbh_A ESXA; unknown function, 25.6 1.2E+02 0.004 18.4 5.4 16 68-83 10-25 (99)
51 2r6a_C DNAG primase, helicase 25.4 1.2E+02 0.0041 19.5 4.7 49 68-119 87-135 (143)
52 4fla_A Regulation of nuclear P 25.2 1.8E+02 0.006 20.3 9.6 55 2-63 42-96 (152)
53 3iuo_A ATP-dependent DNA helic 24.5 44 0.0015 22.3 2.3 36 39-75 77-112 (122)
54 3p9y_A CG14216, LD40846P; phos 23.0 32 0.0011 25.5 1.4 17 84-100 152-168 (198)
55 1pve_A HHR23B, UV excision rep 23.0 26 0.0009 21.8 0.8 35 24-59 14-48 (72)
56 4h3k_B RNA polymerase II subun 22.9 43 0.0015 25.1 2.1 18 84-101 168-185 (214)
57 1xi4_A Clathrin heavy chain; a 22.7 4.2E+02 0.014 25.7 9.1 42 31-73 1395-1436(1630)
58 1ug3_A EIF4GI, eukaryotic prot 21.8 2.8E+02 0.0094 21.3 7.6 49 2-50 8-57 (339)
59 2qsf_X RAD23, UV excision repa 21.0 82 0.0028 22.7 3.2 36 24-60 34-69 (171)
60 2rr7_A Dynein heavy chain 9; m 20.9 59 0.002 22.6 2.4 67 25-103 72-140 (155)
61 3f0n_A Mevalonate pyrophosphat 20.3 1.5E+02 0.005 24.3 5.0 56 43-100 238-307 (414)
62 3gwk_C SAG1039, putative uncha 20.0 1.6E+02 0.0054 17.9 5.8 19 68-86 9-27 (98)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=2e-37 Score=227.49 Aligned_cols=133 Identities=27% Similarity=0.482 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHhccchhhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhcc
Q 047910 2 EALRQQISAMRQSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKS 81 (135)
Q Consensus 2 ~~~~~~~~~~~~~~~d~~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 81 (135)
.+|++|+.++++|++++|+||.+|++|++|+++++|+|+.++|.+|++|+++.+..|+.|+.++++|+..++++||+|||
T Consensus 4 ~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 83 (153)
T 3us6_A 4 GQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKG 83 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 68999999999999999999988999999999999999999999999999999999999999876799999999999999
Q ss_pred cccccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047910 82 SSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQAYLEV 134 (135)
Q Consensus 82 SSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~ 134 (135)
||+||||.+|+.+|..||.+++.++.+++...+.+|+.+|..++.+|++|+++
T Consensus 84 ss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~l 136 (153)
T 3us6_A 84 SSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRL 136 (153)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999875
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=100.00 E-value=4.7e-36 Score=218.75 Aligned_cols=133 Identities=25% Similarity=0.470 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHhccchhhhhHHHHHHHhccccCC-cchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhc
Q 047910 2 EALRQQISAMRQSFFDEDILDTHIFQLEQVEHISD-PSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLK 80 (135)
Q Consensus 2 ~~~~~~~~~~~~~~~d~~~lD~~~~~L~~L~~~~~-~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 80 (135)
++|++|+.+|++||+++|+||++|++|++|+++++ |+|+.+||.+|++|+++.+..|+.|++++++|+..++.++|+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LK 83 (149)
T 1yvi_A 4 AALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLK 83 (149)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 68999999999999999999999999999988888 99999999999999999999999999987679999999999999
Q ss_pred ccccccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047910 81 SSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQAYLEV 134 (135)
Q Consensus 81 GSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~ 134 (135)
|||+||||.+|+.+|..||..++.++++++..++.+++.+|..++.+|++|+++
T Consensus 84 Gssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~ 137 (149)
T 1yvi_A 84 GSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQL 137 (149)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999865
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.97 E-value=2.9e-30 Score=191.58 Aligned_cols=118 Identities=15% Similarity=0.302 Sum_probs=111.7
Q ss_pred hccchhhhhH-HHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHh-cCCCCHHHHHHHHhhhcccccccChHHH
Q 047910 14 SFFDEDILDT-HIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIA-NNPVNYMDLDKYFHQLKSSSNCIGANKV 91 (135)
Q Consensus 14 ~~~d~~~lD~-~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~-~~~~D~~~l~~~aH~LKGSSa~iGA~~l 91 (135)
||.++|+||+ +|.+|++|++++ |+|+.+||.+|++|+++++..|++|++ .+ |+.+++.++|+|||||+||||.+|
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV 78 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI 78 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence 6788999998 699999999987 999999999999999999999999999 55 999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC------------HH--------------------------------HHHHHHHHHHHHHHHHHHH
Q 047910 92 VNEAKKAIELCKEEN------------LE--------------------------------AAKASFEKMKVEHTTLKTK 127 (135)
Q Consensus 92 ~~~c~~lE~~~~~~~------------~~--------------------------------~~~~~l~~l~~ef~~~~~~ 127 (135)
+.+|.+||.+|+.++ .+ +|...|.+++.+|..++.+
T Consensus 79 ~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~ 158 (167)
T 2r25_A 79 AWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIE 158 (167)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 44 7889999999999999999
Q ss_pred HHHHhcC
Q 047910 128 LQAYLEV 134 (135)
Q Consensus 128 L~~~l~~ 134 (135)
|++|++-
T Consensus 159 L~~~~~~ 165 (167)
T 2r25_A 159 LSKYYNT 165 (167)
T ss_dssp HHHHTTS
T ss_pred HHHHHcc
Confidence 9999874
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.90 E-value=1.1e-23 Score=148.41 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=104.8
Q ss_pred ccchhhhhHH-HHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhcccccccChHHHHH
Q 047910 15 FFDEDILDTH-IFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVN 93 (135)
Q Consensus 15 ~~d~~~lD~~-~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~ 93 (135)
+.+.++||.. +.+|..+ .|++|+.+++..|++++++.+..|..++..+ |+..+++.+|+|||||+|+|+.+|+.
T Consensus 6 ~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~ 80 (125)
T 2a0b_A 6 SKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ 80 (125)
T ss_dssp CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4456788875 6666655 6899999999999999999999999999987 99999999999999999999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047910 94 EAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQAYLE 133 (135)
Q Consensus 94 ~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~ 133 (135)
+|..+|..++.++.+++...+..|..+|.+++.+|+.|++
T Consensus 81 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~ 120 (125)
T 2a0b_A 81 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVA 120 (125)
T ss_dssp HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998874
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.82 E-value=7.3e-20 Score=128.73 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=99.5
Q ss_pred cchhhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhcccccccChHHHHHHH
Q 047910 16 FDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEA 95 (135)
Q Consensus 16 ~d~~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c 95 (135)
||..++|++ .+..+ -.|+|++..+++.+|+++.|+.+..|+.++..+ |++.+.+.+|+|||||+|+||++|..+|
T Consensus 1 ~~~~~~D~~--~~l~~-~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~ 75 (119)
T 3myf_A 1 FDLHTLNWD--LCLTQ-ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC 75 (119)
T ss_dssp -CTTTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccCHH--HHHHH-hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 467788876 22222 227899999999999999999999999999988 8999999999999999999999999999
Q ss_pred HHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047910 96 KKAIELCKEEN-LEAAKASFEKMKVEHTTLKTKLQAYLE 133 (135)
Q Consensus 96 ~~lE~~~~~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l~ 133 (135)
..||..++.|. .+.....+..+..+...+..+++.|+.
T Consensus 76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~ 114 (119)
T 3myf_A 76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS 114 (119)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 477888889999999999999999874
No 6
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.81 E-value=5.8e-22 Score=139.60 Aligned_cols=110 Identities=15% Similarity=0.247 Sum_probs=91.7
Q ss_pred hhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhcccccccChHHHHHHHHHH
Q 047910 19 DILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKA 98 (135)
Q Consensus 19 ~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~l 98 (135)
+.+|+ ..|.+|+++.||+++.+++..|++++++.|..|+.+...+ |+..+.+.+|+|||||+|+||.+|+.+|..+
T Consensus 10 ~~~d~--~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~l 85 (120)
T 1y6d_A 10 DVLNQ--QKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAI 85 (120)
T ss_dssp TTTTT--THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred ccccH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHH
Confidence 44554 4666777778999999999999999999999999987766 7788999999999999999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047910 99 IELCKEENLEAAKASFEKMKVEHTTLKTKLQAYL 132 (135)
Q Consensus 99 E~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l 132 (135)
|..+|.|+.+.+......+...+.+++..++.++
T Consensus 86 E~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~~ 119 (120)
T 1y6d_A 86 DKKAKANQLQEQGMETSEMLALLHITRDAYRSWT 119 (120)
T ss_dssp HHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999887555555666666666666666654
No 7
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.79 E-value=3.3e-19 Score=126.16 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=98.2
Q ss_pred hhhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhcccccccChHHHHHHHHH
Q 047910 18 EDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKK 97 (135)
Q Consensus 18 ~~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~ 97 (135)
.+++|++ .+..+- .|+|++..+++.+|+++.|+.+..|+.++..+ |++.+++.+|+|||||+++||++|..+|..
T Consensus 12 ~~~~D~~--~~l~~a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~ 86 (123)
T 3iqt_A 12 NATLDWQ--LALRQA-AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL 86 (123)
T ss_dssp GGTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCccCHH--HHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4678876 333332 37899999999999999999999999999988 889999999999999999999999999999
Q ss_pred HHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047910 98 AIELCKEENL-EAAKASFEKMKVEHTTLKTKLQAYLE 133 (135)
Q Consensus 98 lE~~~~~~~~-~~~~~~l~~l~~ef~~~~~~L~~~l~ 133 (135)
||..++.|+. +.....+..+..+...+..+.++|+.
T Consensus 87 LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~~ 123 (123)
T 3iqt_A 87 IEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG 123 (123)
T ss_dssp HHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999964 47788899999999999999999874
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.74 E-value=1.2e-18 Score=121.49 Aligned_cols=101 Identities=8% Similarity=0.125 Sum_probs=85.4
Q ss_pred hhhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhcccccccChHHHHHHHHH
Q 047910 18 EDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKK 97 (135)
Q Consensus 18 ~~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~ 97 (135)
.+.+|.. .|..+ ..|+|+|+.+|+.+|++++++.+..|..+ .. |+ +++||+|||||+||||.+|+.+|..
T Consensus 8 ~~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~ 77 (113)
T 2ooc_A 8 SGAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCER 77 (113)
T ss_dssp -CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3456654 44444 34789999999999999999999999998 22 54 8999999999999999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047910 98 AIELCKEENLEAAKASFEKMKVEHTTLKTKLQAYLE 133 (135)
Q Consensus 98 lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~ 133 (135)
+|..++. ....+..|+.++.+++.+|..+++
T Consensus 78 lE~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~ 108 (113)
T 2ooc_A 78 CEAGQES-----LEGVRTALDAALLDIAAYAHEQAL 108 (113)
T ss_dssp HHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877 567789999999999999998765
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.67 E-value=7.1e-17 Score=113.14 Aligned_cols=88 Identities=10% Similarity=0.141 Sum_probs=81.0
Q ss_pred CCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 047910 35 SDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASF 114 (135)
Q Consensus 35 ~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l 114 (135)
+.++.-.+++.+|+++.++-+..|+.++.++ |+..+++.+|+||||++|+|+.+++.+|.++|..++.++.+.+...+
T Consensus 28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i 105 (116)
T 1sr2_A 28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI 105 (116)
T ss_dssp HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4456777899999999999999999999998 99999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHH
Q 047910 115 EKMKVEHTTL 124 (135)
Q Consensus 115 ~~l~~ef~~~ 124 (135)
..|+..+.++
T Consensus 106 ~~L~~~l~~L 115 (116)
T 1sr2_A 106 SDIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.59 E-value=1.6e-15 Score=103.41 Aligned_cols=92 Identities=8% Similarity=0.204 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcHHHHHHHHHHHHhc------CCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHH---hhcCHHHH
Q 047910 40 FEDFVNVYLRDSTKTLAIIEEEIAN------NPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELC---KEENLEAA 110 (135)
Q Consensus 40 ~~~li~~fl~d~~~~l~~L~~al~~------~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~---~~~~~~~~ 110 (135)
+.+++..|++++++.+..|+.++.. ...++..+.+.+|+|||||+++|+..+..+|..+|... +.|..+..
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~ 82 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKIT 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4689999999999999999999851 11256799999999999999999999999999999875 77877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047910 111 KASFEKMKVEHTTLKTKLQAY 131 (135)
Q Consensus 111 ~~~l~~l~~ef~~~~~~L~~~ 131 (135)
...+..+...++.++..+..+
T Consensus 83 ~~~~~~l~~~~d~l~~~l~~~ 103 (105)
T 1tqg_A 83 SDLLDKIFAGVDMITRMVDKI 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888888877653
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.44 E-value=1.2e-13 Score=98.97 Aligned_cols=90 Identities=9% Similarity=0.232 Sum_probs=71.8
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHhc------CCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHH---hhcCHHHHH
Q 047910 41 EDFVNVYLRDSTKTLAIIEEEIAN------NPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELC---KEENLEAAK 111 (135)
Q Consensus 41 ~~li~~fl~d~~~~l~~L~~al~~------~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~---~~~~~~~~~ 111 (135)
.+++..|++++++.+..|..++.. +..++..+.+.+|+|||||+++|+..++.+|..+|... |.|......
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~ 82 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS 82 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 478999999999999999999841 12267899999999999999999999999999999865 677655445
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047910 112 ASFEKMKVEHTTLKTKLQA 130 (135)
Q Consensus 112 ~~l~~l~~ef~~~~~~L~~ 130 (135)
..++.+...++.+...+..
T Consensus 83 ~l~~~l~~~~D~l~~~l~~ 101 (139)
T 2ld6_A 83 DLLDKIFAGVDMITRMVDK 101 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655554
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.41 E-value=1.8e-13 Score=98.87 Aligned_cols=90 Identities=12% Similarity=0.243 Sum_probs=71.5
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHhc---CCC---CHHHHHHHHhhhcccccccChHHHHHHHHHHHHH---HhhcCHHHHH
Q 047910 41 EDFVNVYLRDSTKTLAIIEEEIAN---NPV---NYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIEL---CKEENLEAAK 111 (135)
Q Consensus 41 ~~li~~fl~d~~~~l~~L~~al~~---~~~---D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~~ 111 (135)
.+++..|++++++.|..|+.++.. ++. ++..+.+.+|+|||||+++|+..+..+|..+|.. .|.|......
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~ 85 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 378999999999999999999932 111 4589999999999999999999999999999987 6777655555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047910 112 ASFEKMKVEHTTLKTKLQA 130 (135)
Q Consensus 112 ~~l~~l~~ef~~~~~~L~~ 130 (135)
..+..+...++.++..+..
T Consensus 86 ~l~~~l~~~~D~l~~~l~~ 104 (146)
T 1i5n_A 86 DIINLFLETKDIMQEQLDA 104 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555544
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.40 E-value=3e-13 Score=93.47 Aligned_cols=91 Identities=12% Similarity=0.307 Sum_probs=75.3
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHhc---CCCC---HHHHHHHHhhhcccccccChHHHHHHHHHHHHH---HhhcCHHHHH
Q 047910 41 EDFVNVYLRDSTKTLAIIEEEIAN---NPVN---YMDLDKYFHQLKSSSNCIGANKVVNEAKKAIEL---CKEENLEAAK 111 (135)
Q Consensus 41 ~~li~~fl~d~~~~l~~L~~al~~---~~~D---~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~~ 111 (135)
.+++..|++++++++..|..++.. ++.| +..+.+.+|+|||||+++|+..+..+|..+|.. .+.+......
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~ 84 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 489999999999999999999842 2223 457999999999999999999999999999974 5777766667
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047910 112 ASFEKMKVEHTTLKTKLQAY 131 (135)
Q Consensus 112 ~~l~~l~~ef~~~~~~L~~~ 131 (135)
..++.+...++.+...++.+
T Consensus 85 ~l~~~l~~~~d~l~~~l~~~ 104 (113)
T 2lch_A 85 DLIDKVKKKLDMVTRELDKK 104 (113)
T ss_dssp HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887777654
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.02 E-value=4.3e-10 Score=81.19 Aligned_cols=89 Identities=18% Similarity=0.269 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcHHHHHHHHHHHHh---cCCCC---HHHHHHHHhhhcccccccChHHHHHHHHHHHHH---HhhcCHHHH
Q 047910 40 FEDFVNVYLRDSTKTLAIIEEEIA---NNPVN---YMDLDKYFHQLKSSSNCIGANKVVNEAKKAIEL---CKEENLEAA 110 (135)
Q Consensus 40 ~~~li~~fl~d~~~~l~~L~~al~---~~~~D---~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~ 110 (135)
..+++..|+++++++|..|...+. .++.| ...+.+.+|+|||||+++|...+..+|-.+|.. .+.|...-.
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 468999999999999999999874 23223 357999999999999999999999999999986 356643333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047910 111 KASFEKMKVEHTTLKTKL 128 (135)
Q Consensus 111 ~~~l~~l~~ef~~~~~~L 128 (135)
...++.+-..++.+...+
T Consensus 89 ~~l~dlll~~~D~l~~lv 106 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAML 106 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.69 E-value=3.9e-08 Score=75.18 Aligned_cols=88 Identities=11% Similarity=0.234 Sum_probs=64.6
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHhc---CCCCH---HHHHHHHhhhcccccccChHHHHHHHHHHHHH---HhhcCHHHHH
Q 047910 41 EDFVNVYLRDSTKTLAIIEEEIAN---NPVNY---MDLDKYFHQLKSSSNCIGANKVVNEAKKAIEL---CKEENLEAAK 111 (135)
Q Consensus 41 ~~li~~fl~d~~~~l~~L~~al~~---~~~D~---~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~~ 111 (135)
.+++..|++++.++|..|...+.. ++.|. ..+.+.+|+|||||+.+|...+..+|-.+|.. .|.|...--.
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~ 85 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 367899999999999999998743 33343 47789999999999999999999999999977 4566433333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047910 112 ASFEKMKVEHTTLKTKL 128 (135)
Q Consensus 112 ~~l~~l~~ef~~~~~~L 128 (135)
..+..+-..++.++.-+
T Consensus 86 ~~~~ll~~~~D~l~~~l 102 (225)
T 2lp4_A 86 DIINLFLETKDIMQEQL 102 (225)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 16
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=87.34 E-value=3.7 Score=30.01 Aligned_cols=82 Identities=9% Similarity=0.157 Sum_probs=59.8
Q ss_pred HHHHHHHHHhccchhhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHH-HHHHHHHHhcCCCCHHHHHHHHhhhcccc
Q 047910 5 RQQISAMRQSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKT-LAIIEEEIANNPVNYMDLDKYFHQLKSSS 83 (135)
Q Consensus 5 ~~~~~~~~~~~~d~~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~-l~~L~~al~~~~~D~~~l~~~aH~LKGSS 83 (135)
...+.+++.+++.+.=....+..|+.+. |+|= ...|++.+... +..|..|..+| |.+.|+.+
T Consensus 22 ~~~~~~~~~~~f~~s~~~~~l~~i~~~d----p~Fd---~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~-------- 84 (194)
T 2cw9_A 22 TDKVTDLLGGLFSKTEMSEVLTEILRVD----PAFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDW-------- 84 (194)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHC----TTCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHH--------
T ss_pred hhhhhhhhccccCCCHHHHHHHHHHhhC----CCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHh--------
Confidence 3455555666666665555577777774 4443 37899999998 79999999998 89999998
Q ss_pred cccChHHHHHHHHHHHHHHhhc
Q 047910 84 NCIGANKVVNEAKKAIELCKEE 105 (135)
Q Consensus 84 a~iGA~~l~~~c~~lE~~~~~~ 105 (135)
+.-.-...++..+......|
T Consensus 85 --~t~~~~~~~~~~i~~r~~~g 104 (194)
T 2cw9_A 85 --CYEATYSQLAHPIQQAKALG 104 (194)
T ss_dssp --BCHHHHHHHHHHHHHHHHTT
T ss_pred --cCHHHHHHHHHHHHHHHHCC
Confidence 55566777777777766554
No 17
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=70.96 E-value=4.5 Score=25.33 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=37.1
Q ss_pred chhhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHH
Q 047910 17 DEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEE 60 (135)
Q Consensus 17 d~~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~ 60 (135)
+...++..+.+++.|-.+-|..|+..++..|=.|+++.+..|=+
T Consensus 9 ~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 34456667889999999999999999999999999998877643
No 18
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=69.60 E-value=10 Score=20.92 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=16.9
Q ss_pred HHHHHhcCCCCHHHHHHHHhhhcc
Q 047910 58 IEEEIANNPVNYMDLDKYFHQLKS 81 (135)
Q Consensus 58 L~~al~~~~~D~~~l~~~aH~LKG 81 (135)
|.-|-..| ||+.++.+=|.||+
T Consensus 17 iyvA~seG--d~etv~~Le~QL~~ 38 (40)
T 1gp8_A 17 MDAAASKG--DVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHTTS--CHHHHHHHHHHHTT
T ss_pred HHHHHhcC--CHHHHHHHHHHHHh
Confidence 34444555 99999999999986
No 19
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=69.42 E-value=15 Score=25.03 Aligned_cols=86 Identities=10% Similarity=0.119 Sum_probs=56.7
Q ss_pred HHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhc-----------ccccccChHHHHHHHHHHHHH----HhhcCHH
Q 047910 44 VNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLK-----------SSSNCIGANKVVNEAKKAIEL----CKEENLE 108 (135)
Q Consensus 44 i~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK-----------GSSa~iGA~~l~~~c~~lE~~----~~~~~~~ 108 (135)
-..|.+|+-..+..|+.+++.+. |-+..++....+| +..+.-|-.....+-..|..+ ...|+.+
T Consensus 13 ~~~Y~~dT~~Vv~~lr~~l~l~~-d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s~g~~P 91 (115)
T 2kmf_A 13 TGNYSQDTLTVIATLREAIDLPQ-DAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYGARP 91 (115)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSCT-TCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CccHHHHHHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCC
Confidence 45689999999999999998642 4344444444443 233444555555555555544 3556555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047910 109 AAKASFEKMKVEHTTLKTKLQA 130 (135)
Q Consensus 109 ~~~~~l~~l~~ef~~~~~~L~~ 130 (135)
--..+.++|.+||.++..+|.+
T Consensus 92 lPek~k~Rl~~el~~AE~al~r 113 (115)
T 2kmf_A 92 IPEKLKKRLQLEFTQAERSIER 113 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 5567889999999999988865
No 20
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=67.78 E-value=5.3 Score=30.11 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=38.9
Q ss_pred CcchHHHHHHHHHHcHHHH-HHHHHHHHhcCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHHhhc
Q 047910 36 DPSLFEDFVNVYLRDSTKT-LAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEE 105 (135)
Q Consensus 36 ~~df~~~li~~fl~d~~~~-l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~ 105 (135)
+|.|- ...|++++... +..|-.|...| |...|+.+ ++-.-....+..+....+.|
T Consensus 72 DPsF~---~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~l----------lse~~y~~f~~~i~~r~~~G 127 (222)
T 3qk9_A 72 DPTFS---NESFTRHLREYIVPEILEAYVKG--DVKVLKKW----------FSEAPFNVYAAQQKIFKEQD 127 (222)
T ss_dssp ---CC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHH----------BCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhh----------cCHHHHHHHHHHHHHHHHCC
Confidence 55554 36788888887 56799999998 89999998 55566666666776665554
No 21
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=65.21 E-value=34 Score=28.85 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=60.6
Q ss_pred CcchHHHHHHHHHHc--HHHHHHHHH-HHHhcCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHHhhc-CHHHHH
Q 047910 36 DPSLFEDFVNVYLRD--STKTLAIIE-EEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEE-NLEAAK 111 (135)
Q Consensus 36 ~~df~~~li~~fl~d--~~~~l~~L~-~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~-~~~~~~ 111 (135)
+++|+..|+. |=.| +++.+..|+ ..+.+.+.+++.+++. |.-|..|..++..+..+..-. ......
T Consensus 117 ~~~Fl~~L~~-fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~~---------S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk 186 (536)
T 3err_A 117 RENFIPTIVN-FSAEEISDAIREKMKKNYMSNPSYNYEIVNRA---------SLAAGPMVKWAIAQLNYADMLKRVEPLR 186 (536)
T ss_dssp CTTHHHHHHH-CCGGGCCHHHHHHHHHHTTTSTTCSHHHHHHH---------CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHh-cCcccCCHHHHHHHHHHhcCCCCCCHHHHHHH---------HHHHHHHHHHHHhcchhHHHHHhhhhhH
Confidence 4567766665 4322 456778886 5777776666666543 456777888888888775433 456667
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047910 112 ASFEKMKVEHTTLKTKLQAYL 132 (135)
Q Consensus 112 ~~l~~l~~ef~~~~~~L~~~l 132 (135)
..+..++.+...+...|+..+
T Consensus 187 ~eLk~lE~eL~e~e~eL~~ll 207 (536)
T 3err_A 187 NELQKLEDDAKDNQQKLEALL 207 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888888887654
No 22
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=62.86 E-value=29 Score=25.51 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=13.3
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 047910 103 KEENLEAAKASFEKMKVEHTTLKTKLQ 129 (135)
Q Consensus 103 ~~~~~~~~~~~l~~l~~ef~~~~~~L~ 129 (135)
..++++.+...+.+|+= |.++...++
T Consensus 176 ~~~d~~~A~~~v~kL~y-~~kl~~~i~ 201 (207)
T 3bvo_A 176 EQDDFEEAKEILTKMRY-FSNIEEKIK 201 (207)
T ss_dssp HTTCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35666666655555544 334444443
No 23
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=60.34 E-value=40 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=23.3
Q ss_pred HHcHHHHHHH-HHHHHhcCCCCHHHHHHHHhhh
Q 047910 48 LRDSTKTLAI-IEEEIANNPVNYMDLDKYFHQL 79 (135)
Q Consensus 48 l~d~~~~l~~-L~~al~~~~~D~~~l~~~aH~L 79 (135)
+.++.+++.+ |...+..+ ||...|...|.-
T Consensus 32 i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGP 62 (133)
T 3ls0_A 32 IAVARDGMEKRLQGLIADQ--NWVDTQTYIHGP 62 (133)
T ss_dssp HHHHHHHHHHTHHHHHHTT--CHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHhhhc--chHHHHHHHhch
Confidence 3456778888 88888887 899999887743
No 24
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=55.52 E-value=54 Score=23.48 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047910 89 NKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQA 130 (135)
Q Consensus 89 ~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~ 130 (135)
.++..+...|+.+-..++++.+...+.+|+= |.++...+..
T Consensus 132 ~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y-~~kl~~~ik~ 172 (181)
T 3uo3_A 132 ERIQDIEAQLGQCYNDKDYAAAVKLTVELKY-WYNLAKAFKD 172 (181)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 4666677777777777788877777776654 5555555544
No 25
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=50.30 E-value=1.4e+02 Score=26.66 Aligned_cols=125 Identities=17% Similarity=0.253 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhc-cchh----------hhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHH
Q 047910 3 ALRQQISAMRQSF-FDED----------ILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMD 71 (135)
Q Consensus 3 ~~~~~~~~~~~~~-~d~~----------~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~ 71 (135)
++++.+++++..- ...| .++.-...++.|+..-..-.+..+.+.|++.. .-|..|..|...| |-..
T Consensus 258 ~vrq~L~dLl~~~~~~~g~~~~s~~l~~ai~~l~~k~~dL~r~L~~AvvdqvsD~F~dt~-~pL~~Li~Aa~~g--~ee~ 334 (832)
T 4igg_A 258 AVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETN-VPLLVLIEAAKNG--NEKE 334 (832)
T ss_dssp HHHHHHHHHHHHHHTCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSS-HHHHHHHHHHHTT--CHHH
T ss_pred HHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHcC--cHHH
Confidence 4666777777532 1112 23332445566655455567888888887654 4445677777777 6676
Q ss_pred HHHHHhhhc--------------cccccc-ChHHHHHHHHHHHHHHhh-----------cCHHHHHHHHHHHHHHHHHHH
Q 047910 72 LDKYFHQLK--------------SSSNCI-GANKVVNEAKKAIELCKE-----------ENLEAAKASFEKMKVEHTTLK 125 (135)
Q Consensus 72 l~~~aH~LK--------------GSSa~i-GA~~l~~~c~~lE~~~~~-----------~~~~~~~~~l~~l~~ef~~~~ 125 (135)
+...+..|- +.|.|= |...+...|..+|.+++. -+...+.+.|+.+.++|....
T Consensus 335 ~~e~a~~F~eha~~lvevA~Lv~~~s~ne~~v~~i~~aa~~le~L~PQVI~Aar~L~~~P~Sk~A~Enle~f~~~W~~~v 414 (832)
T 4igg_A 335 VKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQV 414 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 655554443 444332 455677777777776541 134556777888888887665
Q ss_pred HHHHH
Q 047910 126 TKLQA 130 (135)
Q Consensus 126 ~~L~~ 130 (135)
..|..
T Consensus 415 ~~L~~ 419 (832)
T 4igg_A 415 RVLTD 419 (832)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 26
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=49.63 E-value=10 Score=25.10 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 047910 88 ANKVVNEAKKAIELCKEENLEAAKASFEKMKV 119 (135)
Q Consensus 88 A~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 119 (135)
...+..++..|+.+...++.+.+..+|..|+.
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~ 42 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGALDLLKKLNS 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 56888999999998777777778888887743
No 27
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=48.92 E-value=59 Score=21.92 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=55.3
Q ss_pred HHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhh-----------cccccccChHHHHHHHHHHHHH----HhhcCHHH
Q 047910 45 NVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQL-----------KSSSNCIGANKVVNEAKKAIEL----CKEENLEA 109 (135)
Q Consensus 45 ~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~L-----------KGSSa~iGA~~l~~~c~~lE~~----~~~~~~~~ 109 (135)
..|.+|+-..+..|+.+++.+. |-+........+ .+..+.-|-.....+-..|..+ ...|+.+-
T Consensus 10 ~~Y~~dT~~Vv~~lr~~l~l~~-d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~g~~Pl 88 (113)
T 2y6x_A 10 GNFREDTLALISSLREAIALPE-NDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSYPNRPL 88 (113)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCT-TCTTHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred ccHHHHHHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCCC
Confidence 4588999999999999988642 323333333333 3344445555555555555544 34555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047910 110 AKASFEKMKVEHTTLKTKLQA 130 (135)
Q Consensus 110 ~~~~l~~l~~ef~~~~~~L~~ 130 (135)
-..+.++|.+||.++..+|.+
T Consensus 89 Pek~k~Rl~~el~~AE~al~R 109 (113)
T 2y6x_A 89 PEKLKARLEQEFKQVELALDR 109 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999999988875
No 28
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=47.50 E-value=20 Score=24.28 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhccchhhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhcccc
Q 047910 4 LRQQISAMRQSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSS 83 (135)
Q Consensus 4 ~~~~~~~~~~~~~d~~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSS 83 (135)
|...+.+.++-|+.+|+--+. .+| .+..+++.|+.-..+..-++..|..- ...+| -|.+||.|
T Consensus 58 lekeiadkvkimfaqgyhiev----lql-------ilekildsfisvireqyhdlqaaasy----ittvr--dhifkgts 120 (146)
T 3zta_A 58 LEKEIADKVKIMFAQGYHIEV----LQL-------ILEKILDSFISVIREQYHDLQAAASY----ITTVR--DHIFKGTS 120 (146)
T ss_dssp HHHHHHHHHHHHHHHTCCTHH----HHH-------HHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHhcchH
Confidence 445566666666666653311 111 34566777766555555445444321 12333 38888876
Q ss_pred c
Q 047910 84 N 84 (135)
Q Consensus 84 a 84 (135)
-
T Consensus 121 f 121 (146)
T 3zta_A 121 F 121 (146)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.17 E-value=46 Score=22.35 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHhccchhhhhHHHHHHHhccccCCcchHHHHHHHH
Q 047910 2 EALRQQISAMRQSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVY 47 (135)
Q Consensus 2 ~~~~~~~~~~~~~~~d~~~lD~~~~~L~~L~~~~~~df~~~li~~f 47 (135)
+.+..++..+++..+..|-+++...-+++|. -|.|..+++...
T Consensus 4 eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~---~p~f~~e~V~~~ 46 (129)
T 2nsz_A 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKELE---VPHFHHELVYEA 46 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT---CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC---CCccHHHHHHHH
Confidence 5678888899999998898998888888884 556665555543
No 30
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=44.29 E-value=81 Score=22.22 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047910 89 NKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQA 130 (135)
Q Consensus 89 ~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~ 130 (135)
.++..+...|..+-..++++.+...+.+|+= |.++...++.
T Consensus 123 ~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y-~~kl~~~i~~ 163 (171)
T 1fpo_A 123 KMFDTRHQLMVEQLDNETWDAAADTCRKLRF-LDKLRSSAEQ 163 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3556666666666667788888877776664 4455555544
No 31
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=44.17 E-value=49 Score=26.40 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=45.7
Q ss_pred HcHHHHHHHHHHHHhcCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 047910 49 RDSTKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKL 128 (135)
Q Consensus 49 ~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L 128 (135)
...+..+.++..++=. +.|...++..+..|+++ +..+....+.+.. +..+....+..+...++..+.+++...
T Consensus 282 ~~i~~~VDeLa~slYP-p~d~~~v~~~~~~L~~~-----~~~~~~~~~~~~~-~~~~~~~Wi~~l~~A~~h~~~~~~~~~ 354 (360)
T 3ay5_A 282 DEISPSVDDLALSIYP-PMSHLTVRINSAKLVSV-----LKKALEITKASHV-TPQPEDSWIPLLINAIDHCMNRIKELT 354 (360)
T ss_dssp HHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHHH-----HHHHHHHHHHSTT-CC----CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHH-----HHHHHHHHHHccC-CCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555543 35777888777777663 2333333333222 344556667778888999999998887
Q ss_pred HHHhcC
Q 047910 129 QAYLEV 134 (135)
Q Consensus 129 ~~~l~~ 134 (135)
+..+++
T Consensus 355 ~~~~~~ 360 (360)
T 3ay5_A 355 QSELEL 360 (360)
T ss_dssp GGGGCC
T ss_pred HHHhcC
Confidence 776653
No 32
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=43.83 E-value=83 Score=22.20 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcccccccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 047910 69 YMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMK 118 (135)
Q Consensus 69 ~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~ 118 (135)
..++..+...++ .++..+...|+.+-..++++.+...+.+|+
T Consensus 115 ~~~l~~l~~~~~--------~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~ 156 (174)
T 3hho_A 115 EAALVAFDTKVT--------AMQRHYLAQLQGQLAQSEWLAAADQIRKLK 156 (174)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344555544443 356666777777777778877776555443
No 33
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=41.01 E-value=31 Score=20.69 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=28.0
Q ss_pred HHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHH
Q 047910 24 HIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEE 60 (135)
Q Consensus 24 ~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~ 60 (135)
+|.+++++-. .+|+.+..++...-..-|+++..|.+
T Consensus 12 qf~~lR~~vq-~NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 12 QFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHH-HCGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 5888888876 58998888888887777777766544
No 34
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=38.98 E-value=48 Score=20.64 Aligned_cols=64 Identities=9% Similarity=0.170 Sum_probs=38.1
Q ss_pred HHHHHHhccchhhhhHH-HHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 047910 8 ISAMRQSFFDEDILDTH-IFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKY 75 (135)
Q Consensus 8 ~~~~~~~~~d~~~lD~~-~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~ 75 (135)
+..++..++..|++... .+.|+.- ....+=+..|++.-..-++.-......++... ++..+...
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~--~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~~ 88 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNE--PTQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAAL 88 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTS--SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHHH
Confidence 34455556666666664 5555553 23445566677766666777777777777653 44444443
No 35
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=37.55 E-value=35 Score=24.97 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhhhcc
Q 047910 52 TKTLAIIEEEIANNPVNYMDLDKYFHQLKS 81 (135)
Q Consensus 52 ~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 81 (135)
.+++..|.+|++.+ |-+.+.+++..||-
T Consensus 152 ~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~ 179 (188)
T 3do9_A 152 ERLLKQIDEALDKQ--DKEAFHRLTAELKM 179 (188)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 56789999999998 89999999988873
No 36
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.92 E-value=70 Score=22.18 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHhccchhhhhHHHHHHHhccccCCcchHHHHHHHH
Q 047910 2 EALRQQISAMRQSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVY 47 (135)
Q Consensus 2 ~~~~~~~~~~~~~~~d~~~lD~~~~~L~~L~~~~~~df~~~li~~f 47 (135)
+.+..++..+++..+..|-+++...-+++|. -|.|..+++...
T Consensus 6 eel~kki~~lL~EY~~~~D~~EA~~cl~EL~---~p~f~~e~V~~~ 48 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSGDISEAEHCLKELE---VPHFHHELVYEA 48 (152)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT---CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC---CCcchHHHHHHH
Confidence 4677888888898888898888888888884 456665555543
No 37
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=36.38 E-value=95 Score=20.85 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 047910 89 NKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKL 128 (135)
Q Consensus 89 ~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L 128 (135)
..+..+..++=.+++.|+|+... .++.+|......|
T Consensus 12 q~i~~lS~~ML~aA~~gdWD~Lv----~lE~~y~~~Ve~l 47 (122)
T 3a7m_A 12 QRIALLSQSLLELAQRGEWDLLL----QQEVSYLQSIETV 47 (122)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHHHH
Confidence 35677778888888888888743 4455555555444
No 38
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=31.81 E-value=1.3e+02 Score=20.98 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=32.0
Q ss_pred hhhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhc----CCCCHHHHHHHHhhhcccccccChHHHH
Q 047910 18 EDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIAN----NPVNYMDLDKYFHQLKSSSNCIGANKVV 92 (135)
Q Consensus 18 ~~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~----~~~D~~~l~~~aH~LKGSSa~iGA~~l~ 92 (135)
+..+...+.++..+.++.+..-...++..|+++-.+.+..++..+.. |+.-|..=..++-..+++++.-||+..+
T Consensus 99 E~~~~~~~~~l~~~A~~~~D~~t~~~l~~~l~eqe~~~~~l~~~l~~l~~~g~~l~~~d~~l~~~~~~~~~~~~~~~~~ 177 (189)
T 3oj5_A 99 ERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRVADRAGANLFELENFVAREVDVAPAASGAPHAA 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHHhhCCCCCCCCCCccc
Confidence 33344444455555444444445577778888877777777766642 1101112233455566666777777654
No 39
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=31.62 E-value=79 Score=19.68 Aligned_cols=48 Identities=4% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhc
Q 047910 6 QQISAMRQSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIAN 64 (135)
Q Consensus 6 ~~~~~~~~~~~d~~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~ 64 (135)
.+|+++++++--...+|. .-.+++.++.+.|++++-..--.+..-=..
T Consensus 9 ~~L~~Lv~~idp~~~ld~-----------~vee~ll~lADdFV~~V~~~ac~lAKhR~s 56 (76)
T 1h3o_B 9 KKLQDLVREVDPNEQLDE-----------DVEEMLLQIADDFIESVVTAACQLARHRKS 56 (76)
T ss_dssp HHHHHHHHHHCSSCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456666666533222332 234678889999999888776666554333
No 40
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=30.86 E-value=1.6e+02 Score=21.77 Aligned_cols=85 Identities=9% Similarity=0.061 Sum_probs=48.7
Q ss_pred HHHHHHcHHHHHHHHHHHHhc--C--CCCHHHHHHHHhhhcccccccChHH--HHHHHHHHHHHHhhc---CHHHHHHHH
Q 047910 44 VNVYLRDSTKTLAIIEEEIAN--N--PVNYMDLDKYFHQLKSSSNCIGANK--VVNEAKKAIELCKEE---NLEAAKASF 114 (135)
Q Consensus 44 i~~fl~d~~~~l~~L~~al~~--~--~~D~~~l~~~aH~LKGSSa~iGA~~--l~~~c~~lE~~~~~~---~~~~~~~~l 114 (135)
+..|..++.+.+.-|...-.. . ..|+..+...-...++=-..|.+.. +..+...-+.+.... +.+.....+
T Consensus 115 ~~~f~~~~~e~~~Wl~~k~~~l~~~~~~d~~~v~~l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~ 194 (323)
T 3edv_A 115 LHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRE 194 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 346888888887777764332 1 1377777776666666555565543 333333333333322 245566667
Q ss_pred HHHHHHHHHHHHHH
Q 047910 115 EKMKVEHTTLKTKL 128 (135)
Q Consensus 115 ~~l~~ef~~~~~~L 128 (135)
..+...|..++...
T Consensus 195 ~~l~~~W~~l~~~~ 208 (323)
T 3edv_A 195 NEVLEAWKSLLDAC 208 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665543
No 41
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=30.12 E-value=93 Score=18.74 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=10.6
Q ss_pred CCHHHHHHHHhhhccccccc
Q 047910 67 VNYMDLDKYFHQLKSSSNCI 86 (135)
Q Consensus 67 ~D~~~l~~~aH~LKGSSa~i 86 (135)
+|++.++..|-.+++.+..|
T Consensus 6 v~~~~l~~~A~~~~~~~~~l 25 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQI 25 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 35555555555555554444
No 42
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=30.00 E-value=1.4e+02 Score=20.80 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHhcccc-CCcchHHHHHHHHHH
Q 047910 3 ALRQQISAMRQSFFDEDILDTHIFQLEQVEHI-SDPSLFEDFVNVYLR 49 (135)
Q Consensus 3 ~~~~~~~~~~~~~~d~~~lD~~~~~L~~L~~~-~~~df~~~li~~fl~ 49 (135)
.++.+...+++..+..|-+++....+++|..+ -.|.||..+|..-++
T Consensus 8 e~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~ald 55 (165)
T 2rg8_A 8 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALE 55 (165)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHc
Confidence 45667777888888888888878888888521 234444444444433
No 43
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=28.10 E-value=1.4e+02 Score=20.16 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 047910 89 NKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKTKLQ 129 (135)
Q Consensus 89 ~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~ 129 (135)
..+..+..++=.+++.|+|+... .++.+|......|.
T Consensus 25 q~Il~lS~~ML~aA~~gdWD~Lv----~lE~~y~~lVe~L~ 61 (126)
T 3h3m_A 25 QDIANLTSRMLAAANASNWDLVL----NHGQEYVCLVERLR 61 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcHHHHH----HHHHHHHHHHHHHH
Confidence 35677778888888888888743 44555665555554
No 44
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=27.11 E-value=71 Score=24.58 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=31.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 047910 80 KSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKV 119 (135)
Q Consensus 80 KGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 119 (135)
-|+.+.|+++-+.+.|.++=++.++|+.+.+..+..++..
T Consensus 210 ~G~~G~i~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~ 249 (309)
T 3fkr_A 210 AGATGAMTGGGFPDGIRPILEAWREGRHDDAYARYQAWLP 249 (309)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcEEEEhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666667777788999999999999999998876655543
No 45
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=26.74 E-value=1.2e+02 Score=20.30 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhcCHHHH
Q 047910 90 KVVNEAKKAIELCKEENLEAA 110 (135)
Q Consensus 90 ~l~~~c~~lE~~~~~~~~~~~ 110 (135)
.+..+..++=.+++.|+|+..
T Consensus 16 ~il~lS~~ML~aA~~gdWD~L 36 (123)
T 3nkz_A 16 QILTLSEQMLVLATEGNWDAL 36 (123)
T ss_dssp HHHHHHHHHHHHHTTSCTTHH
T ss_pred HHHHHHHHHHHHHHHCcHHHH
Confidence 456677777777888887764
No 46
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=26.36 E-value=1.1e+02 Score=18.36 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=17.7
Q ss_pred CCHHHHHHHHhhhcccccccChHHHHHHHHHHHHH
Q 047910 67 VNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIEL 101 (135)
Q Consensus 67 ~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~ 101 (135)
+|++.|+..|-.+++.+.+|-. .+..+...+..+
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~L 42 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQS-QINRLEGDINSL 42 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4566666666666665555432 234444444444
No 47
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=26.24 E-value=22 Score=20.72 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=16.1
Q ss_pred CCcchHHHHHHHHHHcHHHHHHHH
Q 047910 35 SDPSLFEDFVNVYLRDSTKTLAII 58 (135)
Q Consensus 35 ~~~df~~~li~~fl~d~~~~l~~L 58 (135)
.+++|+..+-+.|+....+.+..+
T Consensus 26 nD~~Fl~~IHeAYl~sl~~~~~n~ 49 (51)
T 2wx3_A 26 NDSSFLSTLHEVYLQVLTKNKDNH 49 (51)
T ss_dssp HCHHHHHHHHHHHHHTTC------
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcc
Confidence 578999999999998877766544
No 48
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=26.16 E-value=28 Score=19.86 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=13.6
Q ss_pred CCcchHHHHHHHHHHcHHHHH
Q 047910 35 SDPSLFEDFVNVYLRDSTKTL 55 (135)
Q Consensus 35 ~~~df~~~li~~fl~d~~~~l 55 (135)
.+++|+..+-+.|+....+.|
T Consensus 24 nD~~Fl~~iHeAYl~sl~~~l 44 (46)
T 2wx4_A 24 NDKEFANKLHKAYLNGCSNLL 44 (46)
T ss_dssp HCTTHHHHHHHHHHC------
T ss_pred cCHHHHHHHHHHHHHHHHHHh
Confidence 578899999999998877665
No 49
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=25.77 E-value=1.7e+02 Score=20.41 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 047910 89 NKVVNEAKKAIELCKEENLEAAKASFEKMKVEHTTLKT 126 (135)
Q Consensus 89 ~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~ 126 (135)
..|..--.+|..+++.++...+..........|+.+.+
T Consensus 109 ~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~ 146 (149)
T 1vyk_A 109 SKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLA 146 (149)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777888877776655555555544443
No 50
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=25.60 E-value=1.2e+02 Score=18.36 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=6.7
Q ss_pred CHHHHHHHHhhhcccc
Q 047910 68 NYMDLDKYFHQLKSSS 83 (135)
Q Consensus 68 D~~~l~~~aH~LKGSS 83 (135)
|++.|+..|-.++..+
T Consensus 10 ~~~~l~~~A~~~~~~~ 25 (99)
T 3zbh_A 10 TPEELRGVARQYNVES 25 (99)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 51
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=25.41 E-value=1.2e+02 Score=19.55 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=37.5
Q ss_pred CHHHHHHHHhhhcccccccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 047910 68 NYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELCKEENLEAAKASFEKMKV 119 (135)
Q Consensus 68 D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 119 (135)
....+..++..+|-.+- -.++..++.++...+..|+.+.......++.+
T Consensus 87 ~~~~i~~y~~~v~~~~~---~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~ 135 (143)
T 2r6a_C 87 SEQELEDYIRHVLNRPK---WLMLKVKEQEKTEAERRKDFLTAARIAKEMIE 135 (143)
T ss_dssp CHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45678888888887654 47888899999998888888887766655544
No 52
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=25.16 E-value=1.8e+02 Score=20.32 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhccchhhhhHHHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHHHHh
Q 047910 2 EALRQQISAMRQSFFDEDILDTHIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIA 63 (135)
Q Consensus 2 ~~~~~~~~~~~~~~~d~~~lD~~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~ 63 (135)
++.+++|..++-.+.|..+|+ .+.+-...+-+.+.|+.....-.+....|..-+.
T Consensus 42 a~vrq~Ia~LP~eVsd~s~l~-------klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~ 96 (152)
T 4fla_A 42 ATVRQKIASLPQEVQDVSLLE-------KITDKEAAERLSKTVDEACLLLAEYNGRLAAELE 96 (152)
T ss_dssp HHHHHHHHTSCGGGTCGGGGG-------GCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccCHHHHH-------HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888877 5554332222234444444444455555555554
No 53
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=24.48 E-value=44 Score=22.26 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 047910 39 LFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLDKY 75 (135)
Q Consensus 39 f~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~~~ 75 (135)
-+..+...|.+.....|..+.+++.. +.+|..+|-.
T Consensus 77 ~~~~I~~~~~~~~~~~Lk~i~e~l~~-~~sy~eIRlv 112 (122)
T 3iuo_A 77 HLEDIFEYFKESTTDSLEEAMQELGK-DYSEEEIRLV 112 (122)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTT-TSCHHHHHHH
T ss_pred HHHHHHHHHHHcCcccHHHHHHHccC-cCCHHHHHHH
Confidence 34456666666555567777777764 3677777754
No 54
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=23.03 E-value=32 Score=25.54 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=15.8
Q ss_pred cccChHHHHHHHHHHHH
Q 047910 84 NCIGANKVVNEAKKAIE 100 (135)
Q Consensus 84 a~iGA~~l~~~c~~lE~ 100 (135)
|.+||..+.++|..|+.
T Consensus 152 A~~Ga~~ileL~~~l~~ 168 (198)
T 3p9y_A 152 ALMGAFVITDMINMMAK 168 (198)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999999987
No 55
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=22.96 E-value=26 Score=21.76 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=25.9
Q ss_pred HHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHH
Q 047910 24 HIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIE 59 (135)
Q Consensus 24 ~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~ 59 (135)
+|.+|+++-. .+|+++..|+...-..-|+++..|.
T Consensus 14 qf~qlR~~vq-qNP~lL~~lLqqL~~~NPqL~q~I~ 48 (72)
T 1pve_A 14 QFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQIS 48 (72)
T ss_dssp TTTTHHHHHT-TCGGGHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHH
Confidence 4778887766 5888888888887777777766554
No 56
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=22.94 E-value=43 Score=25.09 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=15.6
Q ss_pred cccChHHHHHHHHHHHHH
Q 047910 84 NCIGANKVVNEAKKAIEL 101 (135)
Q Consensus 84 a~iGA~~l~~~c~~lE~~ 101 (135)
|.+||..+.++|..|+..
T Consensus 168 A~~Ga~~ileL~~~le~~ 185 (214)
T 4h3k_B 168 ATLGAFLICELCQCIQHT 185 (214)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 569999999999999764
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=22.72 E-value=4.2e+02 Score=25.69 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=35.2
Q ss_pred ccccCCcchHHHHHHHHHHcHHHHHHHHHHHHhcCCCCHHHHH
Q 047910 31 VEHISDPSLFEDFVNVYLRDSTKTLAIIEEEIANNPVNYMDLD 73 (135)
Q Consensus 31 L~~~~~~df~~~li~~fl~d~~~~l~~L~~al~~~~~D~~~l~ 73 (135)
+....+|++.-+.+.-|++.-|..|..|-.++... +|+.++-
T Consensus 1395 i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~r-lD~~R~V 1436 (1630)
T 1xi4_A 1395 ITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPR-LDHTRAV 1436 (1630)
T ss_pred hcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhc-CChHHHH
Confidence 34457899999999999999999999999999874 6766543
No 58
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.78 E-value=2.8e+02 Score=21.33 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHhccchhhhhHHHHHHHhcccc-CCcchHHHHHHHHHHc
Q 047910 2 EALRQQISAMRQSFFDEDILDTHIFQLEQVEHI-SDPSLFEDFVNVYLRD 50 (135)
Q Consensus 2 ~~~~~~~~~~~~~~~d~~~lD~~~~~L~~L~~~-~~~df~~~li~~fl~d 50 (135)
+.+..++..+++..+..|-+++...-+++|..+ -.+.||..+|...++-
T Consensus 8 ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~ 57 (339)
T 1ug3_A 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLER 57 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCC
Confidence 356778888888888888888878888888543 2345666666666654
No 59
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=20.95 E-value=82 Score=22.66 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=25.4
Q ss_pred HHHHHHhccccCCcchHHHHHHHHHHcHHHHHHHHHH
Q 047910 24 HIFQLEQVEHISDPSLFEDFVNVYLRDSTKTLAIIEE 60 (135)
Q Consensus 24 ~~~~L~~L~~~~~~df~~~li~~fl~d~~~~l~~L~~ 60 (135)
+|.+++.+-. .+|.++..|+...-..-|.++..|.+
T Consensus 34 qf~qlRq~vq-qNPqlL~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 34 DLLSLRQVVS-GNPEALAPLLENISARYPQLREHIMA 69 (171)
T ss_dssp HHHHHHHHHH-TCGGGHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 5788887766 58888888777666666766665543
No 60
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=20.86 E-value=59 Score=22.55 Aligned_cols=67 Identities=6% Similarity=0.036 Sum_probs=44.7
Q ss_pred HHHHHhccccCCcchHHHHHHHHHHc--HHHHHHHHHHHHhcCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHH
Q 047910 25 IFQLEQVEHISDPSLFEDFVNVYLRD--STKTLAIIEEEIANNPVNYMDLDKYFHQLKSSSNCIGANKVVNEAKKAIELC 102 (135)
Q Consensus 25 ~~~L~~L~~~~~~df~~~li~~fl~d--~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~ 102 (135)
|...+.+- ++++|+..|++ |=.| +++.+..|+..+.+.+.+++.+++. |..|..|...+..+..+.
T Consensus 72 W~~~k~~l--~~~~Fl~~L~~-fdkd~I~~~~~~~l~~yl~~p~f~~e~v~~~---------S~Aa~~Lc~WV~A~~~y~ 139 (155)
T 2rr7_A 72 WEASKKML--MEFDFLDSLRK-FDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQ---------SVACAGLCSWVIALEKYD 139 (155)
T ss_dssp HHHHHHHH--SCSSHHHHHHH-SCGGGCCHHHHTTSTTTSSCTTSSHHHHHHH---------CTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--chHHHHHHHHh-cCcccChHHHHHHHHHHhcCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 55555554 45689988775 5222 4677888888888776677777654 456677888877777664
Q ss_pred h
Q 047910 103 K 103 (135)
Q Consensus 103 ~ 103 (135)
+
T Consensus 140 ~ 140 (155)
T 2rr7_A 140 K 140 (155)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=20.31 E-value=1.5e+02 Score=24.28 Aligned_cols=56 Identities=5% Similarity=0.136 Sum_probs=37.3
Q ss_pred HHHHHHHc-HHHHHHHHHHHHhcCCCCHHHHHHH-------Hhhhcccc------cccChHHHHHHHHHHHH
Q 047910 43 FVNVYLRD-STKTLAIIEEEIANNPVNYMDLDKY-------FHQLKSSS------NCIGANKVVNEAKKAIE 100 (135)
Q Consensus 43 li~~fl~d-~~~~l~~L~~al~~~~~D~~~l~~~-------aH~LKGSS------a~iGA~~l~~~c~~lE~ 100 (135)
+...++.. ++..+..|..|+.++ ||+.+.+. -|..-=.+ -+-+-.++...+.+++.
T Consensus 238 ~~~~~v~~~~~~~~~~l~~AL~~g--D~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~ 307 (414)
T 3f0n_A 238 LLKFRAESVVPERMKEMTRCIQEQ--DFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNT 307 (414)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHH
Confidence 44566777 899999999999998 99987553 45422222 34445566666666654
No 62
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.03 E-value=1.6e+02 Score=17.88 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=9.1
Q ss_pred CHHHHHHHHhhhccccccc
Q 047910 68 NYMDLDKYFHQLKSSSNCI 86 (135)
Q Consensus 68 D~~~l~~~aH~LKGSSa~i 86 (135)
|++.|+..|-.++..+.+|
T Consensus 9 ~~e~l~~~A~~~~~~~~~i 27 (98)
T 3gwk_C 9 TPEELRSSAQKYTAGSQQV 27 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4445555544444444443
Done!