BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>047915
MYQSLVEMMMEPKGGRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQS
YHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHE
LNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSD
DDQEQEGRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQ
VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEP
PLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMADLNFLMCKA
IENPSLTPASSLRSSFIYQLKNDIGNPNLSSQP

High Scoring Gene Products

Symbol, full name Information P value
AT3G52610 protein from Arabidopsis thaliana 4.8e-62

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  047915
        (393 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2083183 - symbol:AT3G52610 "AT3G52610" species...   634  4.8e-62   1


>TAIR|locus:2083183 [details] [associations]
            symbol:AT3G52610 "AT3G52610" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AY142492
            IPI:IPI00534759 PIR:T08438 RefSeq:NP_566970.1 UniGene:At.1731
            UniGene:At.51378 ProteinModelPortal:Q8H1S5 PaxDb:Q8H1S5
            PRIDE:Q8H1S5 DNASU:824427 EnsemblPlants:AT3G52610.1 GeneID:824427
            KEGG:ath:AT3G52610 TAIR:At3g52610 eggNOG:NOG243477
            HOGENOM:HOG000029797 InParanoid:Q8H1S5 OMA:WELAKRC PhylomeDB:Q8H1S5
            ProtClustDB:CLSN2689130 Genevestigator:Q8H1S5 Uniprot:Q8H1S5
        Length = 475

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 139/326 (42%), Positives = 203/326 (62%)

Query:    68 RLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWC 127
             R   + +  +F   ++  + +++  F+  ST++I+  S+     P ++ILEHE+N+N W 
Sbjct:    67 RFDASANSFSFVVTSAADSHVEIHPFDSVSTAQIIRDSDDPCADPHRIILEHEMNKNTWI 126

Query:   128 NLK--CTSTTDMLYASSYALPD--AKWVVALRLHVAACDRTTAXXXXXXXXXXXXXXXX- 182
             N      S + +   S Y L D   + ++  RL+ AA DRT A                 
Sbjct:   127 NPHRWIKSESRVFIVSLYDLTDDGEQRILTFRLNTAAVDRTAAVTLLREFMKETAADGFG 186

Query:   183 -----XXXEGRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAK-SP 236
                     E    +  AIE LIP GK  K  WARG D+L YS+N+ + +NL F+DA+ S 
Sbjct:   187 NGPVVAATETAVGLGKAIEELIPSGKGDKPFWARGIDVLGYSLNAFRFSNLNFVDAENSN 246

Query:   237 RSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQ-----RKYAVATL 291
             R SQ+VRL+L++D T +++  CK+RG+KL   LA++ LIAA++S N       KYAV TL
Sbjct:   247 RRSQLVRLKLDRDQTLKLVAGCKARGLKLWAALASSALIAAYSSKNLPPYQGEKYAVVTL 306

Query:   292 TDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMA 351
             +DCRSILEPPL+++ FGFYH+ I++TH +   EKL DLAK+ Y +F +SK+ N+ F+DM+
Sbjct:   307 SDCRSILEPPLTSNDFGFYHAGILHTHDLTGEEKLWDLAKRCYDSFTSSKNSNKQFTDMS 366

Query:   352 DLNFLMCKAIENPSLTPASSLRSSFI 377
             DLNFLMCKAIENP+LTP+SSLR++FI
Sbjct:   367 DLNFLMCKAIENPNLTPSSSLRTAFI 392

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 120/289 (41%), Positives = 170/289 (58%)

Query:    12 PKG-GRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLH 70
             PK   R   GTEYSWCRA+ GGTGIAV+A+L S+ P+   LQ+ L+KLQ YHP LRS + 
Sbjct:     8 PKSMTRPVGGTEYSWCRAIDGGTGIAVIALLLSRTPKLQNLQNTLDKLQIYHPTLRSNIR 67

Query:    71 TNPSKNTFSFV-TSPT-TFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCN 128
              + S N+FSFV TS   + +++  F+  ST++I+  S+     P ++ILEHE+N+N W N
Sbjct:    68 FDASANSFSFVVTSAADSHVEIHPFDSVSTAQIIRDSDDPCADPHRIILEHEMNKNTWIN 127

Query:   129 LK--CTSTTDMLYASSYALPD--AKWVVALRLHVAACDRTTAXXXXXXXXXXXXXXXX-- 182
                   S + +   S Y L D   + ++  RL+ AA DRT A                  
Sbjct:   128 PHRWIKSESRVFIVSLYDLTDDGEQRILTFRLNTAAVDRTAAVTLLREFMKETAADGFGN 187

Query:   183 ----XXXEGRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAK-SPR 237
                    E    +  AIE LIP GK  K  WARG D+L YS+N+ + +NL F+DA+ S R
Sbjct:   188 GPVVAATETAVGLGKAIEELIPSGKGDKPFWARGIDVLGYSLNAFRFSNLNFVDAENSNR 247

Query:   238 SSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKY 286
              SQ+VRL+L++D T +++  CK+RG+KL   LA++ LIAA++S N   Y
Sbjct:   248 RSQLVRLKLDRDQTLKLVAGCKARGLKLWAALASSALIAAYSSKNLPPY 296


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.130   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      393       374   0.00087  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  236 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.12u 0.19s 29.31t   Elapsed:  00:00:01
  Total cpu time:  29.12u 0.19s 29.31t   Elapsed:  00:00:01
  Start:  Fri May 10 00:35:42 2013   End:  Fri May 10 00:35:43 2013

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