BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047915
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FR6|A Chain A, Tetramerization And Cooperativity In Plasmodium Falciparum
Glutathione Transferase Are Mediated By The Atypic Loop
113-118
pdb|3FR6|B Chain B, Tetramerization And Cooperativity In Plasmodium Falciparum
Glutathione Transferase Are Mediated By The Atypic Loop
113-118
Length = 211
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 44 KVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNL 95
K ET+ L + L K Y L + HTN + + + FV + T+ + FNL
Sbjct: 117 KANETTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAVFNL 168
>pdb|2AAW|A Chain A, Studies On Ligand Binding And Enzyme Inhibition Of
Plasmodium Falciparum Glutathione S-Transferase
pdb|2AAW|C Chain C, Studies On Ligand Binding And Enzyme Inhibition Of
Plasmodium Falciparum Glutathione S-Transferase
Length = 222
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 44 KVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNL 95
K ET+ L + L K Y L + HTN + + + FV + T+ + FNL
Sbjct: 128 KQNETTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAVFNL 179
>pdb|1OKT|A Chain A, X-Ray Structure Of Glutathione S-Transferase From The
Malarial Parasite Plasmodium Falciparum
pdb|1OKT|B Chain B, X-Ray Structure Of Glutathione S-Transferase From The
Malarial Parasite Plasmodium Falciparum
pdb|1PA3|A Chain A, Crystal Structure Of Glutathione-S-Transferase From
Plasmodium Falciparum
pdb|1PA3|B Chain B, Crystal Structure Of Glutathione-S-Transferase From
Plasmodium Falciparum
pdb|1Q4J|A Chain A, Crystal Structure Of Pf-Gst1 With Its Inhibitor
S-Hexyl-Gsh
pdb|1Q4J|B Chain B, Crystal Structure Of Pf-Gst1 With Its Inhibitor
S-Hexyl-Gsh
pdb|3FR9|A Chain A, Tetramerization And Cooperativity In Plasmodium Falciparum
Glutathione Transferase Are Mediated By The Atypic Loop
113-118
pdb|3FR9|B Chain B, Tetramerization And Cooperativity In Plasmodium Falciparum
Glutathione Transferase Are Mediated By The Atypic Loop
113-118
pdb|3FRC|A Chain A, Tetramerization And Cooperativity In Plasmodium Falciparum
Glutathione Transferase Are Mediated By The Atypic Loop
113-118
pdb|3FRC|B Chain B, Tetramerization And Cooperativity In Plasmodium Falciparum
Glutathione Transferase Are Mediated By The Atypic Loop
113-118
Length = 211
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 44 KVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNL 95
K ET+ L + L K Y L + HTN + + + FV + T+ + FNL
Sbjct: 117 KQNETTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAVFNL 168
>pdb|3FR3|A Chain A, Tetramerization And Cooperativity In Plasmodium Falciparum
Glutathione Transferase Are Mediated By The Atypic Loop
113-118
pdb|3FR3|B Chain B, Tetramerization And Cooperativity In Plasmodium Falciparum
Glutathione Transferase Are Mediated By The Atypic Loop
113-118
Length = 208
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 47 ETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNL 95
ET+ L + L K Y L + HTN + + + FV + T+ + FNL
Sbjct: 117 ETTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAVFNL 165
>pdb|2NWA|A Chain A, X-Ray Crystal Structure Of Protein Ytmb From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr466
pdb|2NWA|B Chain B, X-Ray Crystal Structure Of Protein Ytmb From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr466
pdb|2NWA|C Chain C, X-Ray Crystal Structure Of Protein Ytmb From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr466
pdb|2NWA|D Chain D, X-Ray Crystal Structure Of Protein Ytmb From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr466
pdb|2NWA|E Chain E, X-Ray Crystal Structure Of Protein Ytmb From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr466
pdb|2NWA|F Chain F, X-Ray Crystal Structure Of Protein Ytmb From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr466
pdb|2NWA|G Chain G, X-Ray Crystal Structure Of Protein Ytmb From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr466
pdb|2NWA|H Chain H, X-Ray Crystal Structure Of Protein Ytmb From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr466
Length = 88
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 202 GKAKKALWARGRDMLTYSVNSLKSTNLK 229
+ +K W GR ++TY + SL S NL+
Sbjct: 55 AEVQKLQWEEGRTIITYKLTSLHSVNLE 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,195,501
Number of Sequences: 62578
Number of extensions: 370631
Number of successful extensions: 870
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 14
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)