BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047915
         (393 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1T9S1|PAPA5_MYCVP Phthiocerol/phthiodiolone dimycocerosyl transferase
           OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
           GN=papA5 PE=3 SV=1
          Length = 416

 Score = 34.7 bits (78), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 246 LNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATL--TDCRSILEPPLS 303
           L++ DTE+I+  C++  + L  +L+AA L+A  N        V  +   D R +L PP+S
Sbjct: 213 LSEQDTEKIIAFCRANKLGLNSLLSAAVLMAEWNVRRTPNIPVPYVYPVDLRYLLSPPVS 272


>sp|P98161|PKD1_HUMAN Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3
          Length = 4303

 Score = 34.3 bits (77), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 12   PKGGRIASGTEYSWCRAVPGGT 33
            P  G++A+GT  SWC AVPGG+
Sbjct: 1824 PFWGQLATGTNVSWCWAVPGGS 1845


>sp|Q17Z99|ISPE_HELAH 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Helicobacter
           acinonychis (strain Sheeba) GN=ispE PE=3 SV=1
          Length = 268

 Score = 33.5 bits (75), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 15/161 (9%)

Query: 35  IAVLAILTSK-VPETSGL----QDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFI- 88
           +  LAI   K +P  +GL     DA   L   + I   RL+        S V + T F  
Sbjct: 89  LDTLAIEVEKNIPTQAGLGGGSTDAGGLLYHLNQIFDLRLNLEELYTIGSLVGADTNFFI 148

Query: 89  -QVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPD 147
            Q KS N +S  +++E+ E     PL+  LE  + +N +C+ K        Y        
Sbjct: 149 SQYKSANATSYGEVIENFEE---KPLENRLEIYVPDNIFCSTKAVYQA---YKPKTCFYQ 202

Query: 148 AK-WVVALRLH-VAACDRTTAVSLLKELLLVLVSDDDQEQE 186
           AK W+    L  +  CDR+    LLK  LL   +  D E +
Sbjct: 203 AKEWLKKPSLECLKTCDRSELNDLLKPALLTHQALKDIESQ 243


>sp|Q89AM7|ERA_BUCBP GTPase Era OS=Buchnera aphidicola subsp. Baizongia pistaciae
           (strain Bp) GN=era PE=3 SV=1
          Length = 287

 Score = 33.1 bits (74), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 190 EVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKD 249
           + NL I++++ +   +K +   G D L YS+  + + N+  ID     S     + +N  
Sbjct: 186 KTNLDIKSIVSEIIREKLILYLG-DELPYSI-QVSTKNI--IDRNIKTSYIEAVISVNNT 241

Query: 250 DTERILLTCKSRGIKLCGMLAAAGL 274
             ++I++ CK + IKLCG LA   L
Sbjct: 242 QHKKIIIGCKGKKIKLCGSLARKAL 266


>sp|E1C231|LTN1_CHICK E3 ubiquitin-protein ligase listerin OS=Gallus gallus GN=LTN1 PE=3
           SV=1
          Length = 1766

 Score = 32.0 bits (71), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 147 DAKWVVALRLHVAACDRTTAVSLLKELL--------LVLVSDD 181
           D KW+V L++   AC  TT +SL+ E L        LV+++DD
Sbjct: 705 DLKWIVFLQIIQKACSSTTKLSLISEWLKGDMLGERLVMLADD 747


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,799,834
Number of Sequences: 539616
Number of extensions: 5269850
Number of successful extensions: 12407
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 12403
Number of HSP's gapped (non-prelim): 10
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)