Query 047915
Match_columns 393
No_of_seqs 149 out of 1734
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12467 peptide synthase; Pro 100.0 6E-31 1.3E-35 310.1 31.3 308 16-345 50-373 (3956)
2 PRK12467 peptide synthase; Pro 100.0 1E-30 2.3E-35 308.2 33.0 305 17-345 1118-1438(3956)
3 PRK10252 entF enterobactin syn 100.0 2E-30 4.2E-35 285.5 28.3 303 17-346 9-329 (1296)
4 PF00668 Condensation: Condens 100.0 4.7E-31 1E-35 244.8 19.9 266 30-321 23-301 (301)
5 PRK12316 peptide synthase; Pro 100.0 3E-30 6.6E-35 308.8 30.3 307 17-345 51-373 (5163)
6 PRK05691 peptide synthase; Val 100.0 5.4E-30 1.2E-34 304.5 30.5 307 17-345 1730-2052(4334)
7 PRK05691 peptide synthase; Val 100.0 2E-29 4.4E-34 299.6 29.9 307 17-345 677-999 (4334)
8 PRK12316 peptide synthase; Pro 100.0 4.3E-29 9.2E-34 299.0 30.9 303 17-345 2604-2922(5163)
9 PRK09294 acyltransferase PapA5 100.0 2E-28 4.3E-33 238.0 27.9 299 12-347 4-316 (416)
10 PF07247 AATase: Alcohol acety 100.0 9.9E-28 2.1E-32 237.3 31.5 362 17-388 1-423 (480)
11 TIGR02946 acyl_WS_DGAT acyltra 99.9 4.5E-26 9.7E-31 223.6 24.5 308 18-346 1-334 (446)
12 COG4908 Uncharacterized protei 99.8 1.3E-17 2.9E-22 151.6 22.4 298 15-338 5-317 (439)
13 PF03007 WES_acyltransf: Wax e 99.4 2.1E-11 4.5E-16 110.7 16.5 144 18-176 1-155 (263)
14 PLN02481 Omega-hydroxypalmitat 98.9 2.4E-07 5.2E-12 90.6 23.0 268 47-340 63-344 (436)
15 PLN02663 hydroxycinnamoyl-CoA: 98.9 8.2E-07 1.8E-11 86.9 26.1 267 46-340 51-331 (431)
16 PF02458 Transferase: Transfer 98.9 5.3E-08 1.1E-12 95.4 16.7 264 48-339 55-332 (432)
17 PLN03157 spermidine hydroxycin 98.8 1.8E-06 3.9E-11 84.9 24.6 266 48-340 54-339 (447)
18 PF07428 Tri3: 15-O-acetyltran 98.8 5.4E-07 1.2E-11 81.1 18.3 162 149-317 168-355 (413)
19 TIGR03443 alpha_am_amid L-amin 98.6 1.9E-07 4.1E-12 104.5 12.7 110 208-345 1-113 (1389)
20 PLN00140 alcohol acetyltransfe 98.6 6.1E-06 1.3E-10 80.9 21.1 256 48-341 58-329 (444)
21 COG1020 EntF Non-ribosomal pep 98.5 3.2E-07 7E-12 94.5 10.2 100 246-346 1-100 (642)
22 COG4845 Chloramphenicol O-acet 93.9 0.97 2.1E-05 38.4 10.3 26 152-177 186-211 (219)
23 PF01402 RHH_1: Ribbon-helix-h 93.6 0.35 7.5E-06 29.5 5.6 36 242-277 2-37 (39)
24 PHA01623 hypothetical protein 89.5 2.2 4.8E-05 28.5 6.4 40 240-279 14-53 (56)
25 PF03869 Arc: Arc-like DNA bin 89.1 2.1 4.6E-05 27.8 5.9 39 241-279 6-44 (50)
26 PF00302 CAT: Chloramphenicol 87.2 0.53 1.2E-05 40.9 2.9 22 152-173 184-205 (206)
27 PF05534 HicB: HicB family; I 86.7 1.3 2.9E-05 28.9 3.9 32 241-272 19-50 (51)
28 PHA01513 mnt Mnt 86.2 2.5 5.5E-05 30.4 5.3 38 241-278 7-44 (82)
29 PRK13757 chloramphenicol acety 85.5 0.87 1.9E-05 40.0 3.3 26 152-177 187-212 (219)
30 PRK11855 dihydrolipoamide acet 85.0 7 0.00015 39.6 10.0 27 151-177 513-539 (547)
31 PF12651 RHH_3: Ribbon-helix-h 83.4 6.6 0.00014 24.7 5.8 40 241-280 4-43 (44)
32 PRK11675 LexA regulated protei 82.4 5.5 0.00012 29.3 5.8 38 240-277 51-88 (90)
33 PHA01748 hypothetical protein 81.8 7.4 0.00016 26.4 6.0 40 241-280 4-43 (60)
34 PRK11854 aceF pyruvate dehydro 78.5 27 0.00058 36.2 11.6 28 151-178 599-626 (633)
35 PF09274 ParG: ParG; InterPro 78.3 9 0.00019 27.2 5.6 40 235-274 30-69 (76)
36 PHA00617 ribbon-helix-helix do 73.9 17 0.00037 26.2 6.1 40 240-279 40-79 (80)
37 PF04221 RelB: RelB antitoxin; 66.2 27 0.00058 25.3 6.1 38 241-278 3-40 (83)
38 TIGR02384 RelB_DinJ addiction 61.7 33 0.00071 24.9 5.8 36 242-277 5-40 (83)
39 COG4226 HicB Predicted nucleas 60.9 41 0.00088 25.7 6.1 37 241-277 72-108 (111)
40 PRK11235 bifunctional antitoxi 60.0 40 0.00086 24.4 5.8 37 241-277 3-39 (80)
41 PF08681 DUF1778: Protein of u 58.8 45 0.00098 24.0 6.0 38 242-279 2-39 (80)
42 PF00198 2-oxoacid_dh: 2-oxoac 56.9 1E+02 0.0022 27.4 9.2 87 243-344 33-138 (231)
43 PF10723 RepB-RCR_reg: Replica 55.3 47 0.001 24.2 5.6 39 240-278 42-80 (84)
44 PF13467 RHH_4: Ribbon-helix-h 53.5 31 0.00068 23.9 4.2 32 240-271 12-43 (67)
45 PRK11856 branched-chain alpha- 53.1 12 0.00027 36.3 3.0 27 151-177 376-402 (411)
46 PRK13877 conjugal transfer rel 52.2 38 0.00082 26.3 5.0 35 239-273 10-44 (114)
47 PF00755 Carn_acyltransf: Chol 50.9 1.1E+02 0.0024 31.4 9.7 43 256-299 395-437 (591)
48 PRK11856 branched-chain alpha- 48.9 98 0.0021 30.1 8.6 78 251-343 222-316 (411)
49 PF14483 Cut8_M: Cut8 dimerisa 48.1 14 0.00031 22.4 1.7 27 44-70 8-34 (38)
50 PRK13858 type IV secretion sys 47.4 52 0.0011 26.8 5.2 36 238-273 23-58 (147)
51 PLN02226 2-oxoglutarate dehydr 47.0 2E+02 0.0043 28.5 10.1 93 244-344 264-368 (463)
52 PF13817 DDE_Tnp_IS66_C: IS66 44.8 44 0.00095 20.4 3.4 21 254-274 2-22 (39)
53 PRK05704 dihydrolipoamide succ 44.5 2.3E+02 0.005 27.5 10.2 93 244-344 208-312 (407)
54 PTZ00144 dihydrolipoamide succ 43.4 2.2E+02 0.0048 27.8 9.8 87 243-344 218-323 (418)
55 PF14492 EFG_II: Elongation Fa 42.2 28 0.00061 24.6 2.7 38 36-73 6-43 (75)
56 TIGR01349 PDHac_trf_mito pyruv 41.7 2.9E+02 0.0063 27.1 10.5 87 243-344 236-339 (435)
57 PRK11857 dihydrolipoamide acet 40.3 3.1E+02 0.0067 25.5 10.4 68 262-344 131-212 (306)
58 PF00302 CAT: Chloramphenicol 38.8 2.6E+02 0.0057 24.2 9.5 81 251-346 36-129 (206)
59 PF07683 CobW_C: Cobalamin syn 38.3 52 0.0011 24.1 3.8 32 36-69 2-33 (94)
60 PLN02744 dihydrolipoyllysine-r 38.0 2.9E+02 0.0063 28.0 9.9 94 244-345 339-444 (539)
61 TIGR01347 sucB 2-oxoglutarate 37.5 3.4E+02 0.0074 26.3 10.2 94 243-344 203-308 (403)
62 PRK14843 dihydrolipoamide acet 36.9 3.4E+02 0.0075 25.7 9.9 95 244-344 148-254 (347)
63 PLN02528 2-oxoisovalerate dehy 35.8 3.5E+02 0.0077 26.4 10.0 89 241-344 211-319 (416)
64 TIGR01348 PDHac_trf_long pyruv 33.9 3.3E+02 0.0072 27.6 9.8 95 244-344 348-453 (546)
65 TIGR02927 SucB_Actino 2-oxoglu 33.9 3.2E+02 0.0069 28.1 9.8 94 245-344 384-489 (590)
66 PF09498 DUF2388: Protein of u 29.4 58 0.0013 22.9 2.5 26 42-67 35-60 (72)
67 cd00460 RNAP_RPB11_RPB3 RPB11 29.3 1.8E+02 0.004 21.1 5.4 54 3-63 24-84 (86)
68 PF00198 2-oxoacid_dh: 2-oxoac 28.1 79 0.0017 28.0 3.8 29 150-178 196-224 (231)
69 COG4453 Uncharacterized protei 22.0 2.7E+02 0.0059 20.9 5.0 41 240-280 11-51 (95)
70 PF03533 SPO11_like: SPO11 hom 22.0 1.2E+02 0.0026 18.6 2.5 25 320-344 5-29 (43)
No 1
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=6e-31 Score=310.14 Aligned_cols=308 Identities=13% Similarity=0.128 Sum_probs=227.3
Q ss_pred ccCcccc-cchhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeee
Q 047915 16 RIASGTE-YSWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVK 91 (393)
Q Consensus 16 R~l~~~E-~~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (393)
-+|++.- .+|+.. .....||+...++++|.+|.++|++||+.+++|||+|||+|...++++.+++.... ...+.
T Consensus 50 ~pLS~~Q~~lw~~~~~~~~~~~Yni~~~~~l~g~lD~~~L~~A~~~vv~rH~~LRt~f~~~~~~~~q~v~~~~--~~~i~ 127 (3956)
T PRK12467 50 IPLSYAQERQWFLWQLDPDSAAYNIPTALRLRGELDVSALRRAFDALVARHESLRTRFVQDEEGFRQVIDASL--SLTIP 127 (3956)
T ss_pred CCCCHHHHHHHHHHHhCCCCCceeccEEEEEeCCCCHHHHHHHHHHHHHHhhhheEEEEecCCeEEEEEcCCC--CCcee
Confidence 3566664 445533 33457999999999999999999999999999999999999987766666654432 23333
Q ss_pred ecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHH
Q 047915 92 SFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLK 171 (393)
Q Consensus 92 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~ 171 (393)
..+++. .++......+.+.+.++... ||++ .++|++|+.+++++++++.+++.+||+++||||+..|++
T Consensus 128 ~~d~~~------~~~~~~~~~~~~~~~~~~~~-~fdL----~~~pl~r~~l~~~~~~~~~l~l~~HHii~DG~S~~~l~~ 196 (3956)
T PRK12467 128 LDDLAN------EQGRARESQIEAYINEEVAR-PFDL----ANGPLLRVRLLRLADDEHVLVVTLHHIISDGWSMRVLVE 196 (3956)
T ss_pred EEeccc------CChhhHHHHHHHHHHHHhcC-CCCC----CCCCceEEEEEEECCCcEEEEEecCeeeEccchHHHHHH
Confidence 333211 01111133445566677777 9998 699999999999888899999999999999999999999
Q ss_pred HHHHHHhcCCCccccccCCCChhHHhhc-------CC--CcchhHHHHhhhhhhhcccccccccccCCcCC--C-CCCcc
Q 047915 172 ELLLVLVSDDDQEQEGRGEVNLAIEALI-------PK--GKAKKALWARGRDMLTYSVNSLKSTNLKFIDA--K-SPRSS 239 (393)
Q Consensus 172 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~--~-~~~~~ 239 (393)
+|.++|.+..........+.+.++.++. .. ......||++.+... .++..+|...+ . .....
T Consensus 197 el~~~Y~~~~~g~~~~~~~~~~~y~dy~~~~~~~l~~~~~~~~~~yW~~~L~~~------~~~~~lp~~~~~~~~~~~~~ 270 (3956)
T PRK12467 197 ELVQLYSAYSQGREPSLPALPIQYADYAIWQRSWLEAGERERQLAYWQEQLGGE------HTVLELPTDRPRPAVPSYRG 270 (3956)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhcChhhHHHHHHHHHHhccC------CCcCCCCCCCCCCCCCCcCc
Confidence 9999995321111000001111222211 11 122457888876432 12223443321 1 12233
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceee
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHL 319 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~ 319 (393)
......++++.+++|.++||++|+|++++++|||+.++++++|++++.+|+|+++|.... . ..++|+|+|++|++++
T Consensus 271 ~~~~~~l~~~~~~~L~~~a~~~g~T~~~vl~aA~a~lL~r~tg~~dv~iG~pvsgR~~~~--~-~~~iG~fiNtlplrv~ 347 (3956)
T PRK12467 271 ARLRVDLPQALSAGLKALAQREGVTLFMVLLASFQTLLHRYSGQSDIRIGVPNANRNRVE--T-ERLIGFFVNTQVLKAE 347 (3956)
T ss_pred eeEEEeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccCCCCchh--h-hcceeeeeeeeeeEee
Confidence 456788999999999999999999999999999999999999999999999999997532 3 5799999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 320 IKSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 320 v~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
++++.+|.++++++++++.++++|++
T Consensus 348 ~~~~~t~~~ll~~v~~~~~~a~~hq~ 373 (3956)
T PRK12467 348 VDPQASFLELLQQVKRTALGAQAHQD 373 (3956)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999976
No 2
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=1e-30 Score=308.16 Aligned_cols=305 Identities=14% Similarity=0.125 Sum_probs=225.9
Q ss_pred cCccc-ccchhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeee
Q 047915 17 IASGT-EYSWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKS 92 (393)
Q Consensus 17 ~l~~~-E~~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (393)
+|++. |.+|+.. .....||....+++.|.+|.++|++||+.+++|||+|||+|...++++.+.+.... .+++..
T Consensus 1118 PlS~~Q~~lw~~~~~~~~~~~Y~~~~~~~l~g~ld~~~L~~Al~~vv~rH~~LRT~f~~~~~~~~q~v~~~~--~~~~~~ 1195 (3956)
T PRK12467 1118 PLSYAQERQWFLWQLEPGSAAYHIPQALRLKGPLDIEALERSFDALVARHESLRTTFVQEDGRTRQVIHPVG--SLTLEE 1195 (3956)
T ss_pred ccchHHHHHHHHHhhCCCCccceeeEEEEECCCcCHHHHHHHHHHHHHhCCcceEEEEccCCeEEEEECCCC--CCceEE
Confidence 45554 4455543 33456999999999999999999999999999999999999987766666554322 233333
Q ss_pred cccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHH
Q 047915 93 FNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKE 172 (393)
Q Consensus 93 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~ 172 (393)
.+.+. . .....++...++++... ||++ .++|++|+.+++.++++++|++.+||+|+||||+.+|++|
T Consensus 1196 ~~~~~-------~-~~~~~~~~~~~~~~~~~-~fdl----~~~pl~R~~l~~~~~~~~~l~l~~HHii~DG~S~~ill~e 1262 (3956)
T PRK12467 1196 PLLLA-------A-DKDEAQLKVYVEAEARQ-PFDL----EQGPLLRVGLLRLAADEHVLVLTLHHIVSDGWSMQVLVDE 1262 (3956)
T ss_pred eecCc-------c-cchHHHHHHHHHHHhhC-CCCC----CCCcceeEEEEEECCCeEEEEEecchhhhhHhHHHHHHHH
Confidence 32110 0 11134455566666676 8999 6899999999998888899999999999999999999999
Q ss_pred HHHHHhcCCCccccccCCCChhHHhh-------cCCC--cchhHHHHhhhhhhhcccccccccccCCcCCC---CCCccc
Q 047915 173 LLLVLVSDDDQEQEGRGEVNLAIEAL-------IPKG--KAKKALWARGRDMLTYSVNSLKSTNLKFIDAK---SPRSSQ 240 (393)
Q Consensus 173 l~~~y~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~ 240 (393)
|..+|.+..........+.+.++.++ .... ....+||++.+... .+...+|...+. ......
T Consensus 1263 l~~~Y~~~~~g~~~~l~~~~~~y~dy~~wq~~~l~~~~~~~~~~yW~~~L~~~------~~~~~lp~~~~~~~~~~~~~~ 1336 (3956)
T PRK12467 1263 LVALYAAYSQGQSLQLPALPIQYADYAVWQRQWMDAGERARQLAYWKAQLGGE------QPVLELPTDRPRPAVQSHRGA 1336 (3956)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHhcCC------CCcccCCCCCCCCcccCcCce
Confidence 99999532111111111111222222 1111 12456888876431 112234433211 122344
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceeeC
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLI 320 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v 320 (393)
.....++++.+.+|.+.||++|+|++++++|||+.++++++|++++.+|+|+++|... .. +.++|+|+|++|+++++
T Consensus 1337 ~~~~~l~~~~~~~L~~~a~~~~vT~~~vl~aA~a~lL~r~sg~~dvv~G~pvsgR~~~--~~-~~~vG~fvNtlplR~~~ 1413 (3956)
T PRK12467 1337 RLAFELPPALAEGLRALARREGVTLFMLLLASFQTLLHRYSGQDDIRVGVPIANRNRA--ET-EGLIGFFVNTQVLRAEV 1413 (3956)
T ss_pred EEEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhCCCCEEEEecccCCCch--hh-hcceeeeeeeeEEEEec
Confidence 5678899999999999999999999999999999999999999999999999999853 23 57999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 321 KSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 321 ~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
+++.+|.++++++++++.++++|++
T Consensus 1414 ~~~~t~~~~l~~v~~~~~~a~~hq~ 1438 (3956)
T PRK12467 1414 DGQASFQQLLQQVKQAALEAQAHQD 1438 (3956)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999986
No 3
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.97 E-value=2e-30 Score=285.48 Aligned_cols=303 Identities=12% Similarity=0.064 Sum_probs=218.4
Q ss_pred cCcccc-cchhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCccee-ee
Q 047915 17 IASGTE-YSWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQ-VK 91 (393)
Q Consensus 17 ~l~~~E-~~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~-~~ 91 (393)
+|+..- .+|+.. .....||....++++|.+|.++|++||+.+++|||+||++|..+++++.+.+.... .++ +.
T Consensus 9 Pls~~Q~~lw~~~~~~~~~~~yn~~~~~~l~g~ld~~~l~~Al~~lv~rh~~LRt~f~~~~g~~~q~v~~~~--~~~~~~ 86 (1296)
T PRK10252 9 PLVAAQPGIWMAEKLSPLPSAWSVAHYVELTGELDAPLLARAVVAGLAEADTLRMRFTEDNGEVWQWVDPAL--TFPLPE 86 (1296)
T ss_pred CCCHHHHHHHHHHHhCCCCCceeeeEEEEEeCCCCHHHHHHHHHHHHHhccceEEEEEcCCCeEEEEECCCC--CCCcCc
Confidence 566654 345433 33456999999999999999999999999999999999999987776666543322 222 33
Q ss_pred ecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCC-CceEEEEEEcCCCceEEEEEeccccchHhhHHHHH
Q 047915 92 SFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTT-DMLYASSYALPDAKWVVALRLHVAACDRTTAVSLL 170 (393)
Q Consensus 92 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~ 170 (393)
.+|++. . ......+.+.+.++..+ ||++ .++ |++|+.+++++++++.|++.+||+|+||||+.+|+
T Consensus 87 ~~d~~~-------~-~~~~~~~~~~~~~~~~~-~fdl----~~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~~l~ 153 (1296)
T PRK10252 87 IIDLRT-------Q-PDPHAAAQALMQADLQQ-DLRV----DSGKPLVFHQLIQLGDNRWYWYQRYHHLLVDGFSFPAIT 153 (1296)
T ss_pred eeecCC-------C-CCHHHHHHHHHHHHhcC-CcCC----CCCCCCeEEEEEEEcCCEEEEEEecCceeEccccHHHHH
Confidence 444321 0 11123344556666666 8999 676 99999999998899999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccCCCChhHHh-------hcC--CCcchhHHHHhhhhhhhcccccccccccCCcCCC---CCCc
Q 047915 171 KELLLVLVSDDDQEQEGRGEVNLAIEA-------LIP--KGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAK---SPRS 238 (393)
Q Consensus 171 ~~l~~~y~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~ 238 (393)
+||..+|.+......... +...++.+ ... ....+++||++.+.... ....+|...+. ....
T Consensus 154 ~el~~~Y~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~yW~~~L~~~~------~~~~l~~~~~~~~~~~~~ 226 (1296)
T PRK10252 154 RRIAAIYCAWLRGEPTPA-SPFTPFADVVEEYQRYRASEAWQRDAAFWAEQRRQLP------PPASLSPAPLPGRSASAD 226 (1296)
T ss_pred HHHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHhhCchhhHHHHHHHHHhcCCC------CcccCCCCCCCCccCCCc
Confidence 999999953211111100 11111211 111 11235678988774321 11223322111 1112
Q ss_pred ccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeecccee
Q 047915 239 SQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTH 318 (393)
Q Consensus 239 ~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~ 318 (393)
.......++.+.+.++.+.|+ |+|++++++|||..++++++|++++.+|+|+++|.... . ..++|+|+|++|+++
T Consensus 227 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~~l~aa~~~lL~r~sg~~dv~ig~p~sgR~~~~--~-~~~vG~fvntlplr~ 301 (1296)
T PRK10252 227 ILRLKLEFTDGAFRQLAAQAS--GVQRPDLALALVALWLGRLCGRMDYAAGFIFMRRLGSA--A-LTATGPVLNVLPLRV 301 (1296)
T ss_pred ceeeeeecCHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhCCCceEEEEEecCCCchh--h-hcCCCcccceEEEEE
Confidence 234456789999999988665 78999999999999999999999999999999997532 2 569999999999999
Q ss_pred eCCCCCcHHHHHHHHHHHHHhhhccCCC
Q 047915 319 LIKSGEKLGDLAKKIYTAFVNSKHCNRH 346 (393)
Q Consensus 319 ~v~~~~~f~~la~~v~~~~~~~~~~~~~ 346 (393)
+++++.+|.++++++++++.++++|++.
T Consensus 302 ~~~~~~tf~~~l~~~~~~~~~~~~h~~~ 329 (1296)
T PRK10252 302 HIAAQETLPELATRLAAQLKKMRRHQRY 329 (1296)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999873
No 4
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=99.97 E-value=4.7e-31 Score=244.77 Aligned_cols=266 Identities=18% Similarity=0.202 Sum_probs=172.9
Q ss_pred cCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCC-CCceEeeCCCCcceeeeecccCcccccccccccc
Q 047915 30 PGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPS-KNTFSFVTSPTTFIQVKSFNLSSTSKILESSERF 108 (393)
Q Consensus 30 ~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 108 (393)
....||+.+.++++|.+|.++|++||+.++++||+||++|...++ ++.+...... .+.+..++... ...
T Consensus 23 ~~~~~~~~~~~~l~~~~d~~~l~~A~~~~~~~h~~Lr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~ 92 (301)
T PF00668_consen 23 DSSSYNIAFVFELDGPIDIERLRQALERLIARHPILRTRFEEDDGFEPYQRVLESS--SIEIEYIDVSS--------DSD 92 (301)
T ss_dssp TSTTTEEEEEEEEEES--HHHHHHHHHHHHHH-GGGGEEEEECTTCSSEEEEESEE--ETTCEEEECCT--------S-H
T ss_pred CCCcEEEEEEEEecCccchHHHhhhhHhhhhhhhhhhheeeeecccccceeeeecc--ccccccccccc--------ccc
Confidence 445789999999999999999999999999999999999999876 5555544321 12232222110 001
Q ss_pred chhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCCcccccc
Q 047915 109 SIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGR 188 (393)
Q Consensus 109 ~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~ 188 (393)
...++.+.+.+.... +|++ .++|++++.+++.+++++.|++.+||+++||+|+..|+++|.++|.+......
T Consensus 93 ~~~~~~~~~~~~~~~-~~~l----~~~pl~~~~l~~~~~~~~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~~~~~--- 164 (301)
T PF00668_consen 93 SEEEILELIEQELNR-PFDL----SEGPLFRFTLIRTSDDEYFLLISFHHIICDGWSLNILLRELLQAYAGLSNPLP--- 164 (301)
T ss_dssp HHHHHHHHHHHHHCC----T----CTSBSEEEEEEEEETTEEEEEEEEEGGG--HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred chhhhhhhhhhhhhh-cccc----cccchhhccccccccccchhcccccccccccccchhhhhhhHHhhhccccccc---
Confidence 234555566666676 8988 68899999999977778999999999999999999999999999954321000
Q ss_pred CCCChhHHh------hcCCC---cchhHHHHhhhhhhhcccccccccccCCcCCC--CC-CcccEEEEEeCHHHHHHHHH
Q 047915 189 GEVNLAIEA------LIPKG---KAKKALWARGRDMLTYSVNSLKSTNLKFIDAK--SP-RSSQVVRLQLNKDDTERILL 256 (393)
Q Consensus 189 ~~~~~~~~~------~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~--~~-~~~~~~~~~l~~~~t~~l~~ 256 (393)
...++..+ ..... ...++||.+.+..... ...+|...+. .. .......+.++.+.+++|.+
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 237 (301)
T PF00668_consen 165 -APSPSYKDFVEFQREYRNSDRLQEARAFWREYLRGVPP------APSLPPDFPRPSIPSYSPSRISFSLSSELSKRLKE 237 (301)
T ss_dssp ---S-BHHHHHHHHHHHHTSHHHHHHHHHHHHHCCTS-----------CTTTT--CSSBEEBEEEEEEE--HHHHHHHHH
T ss_pred -cccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccchhhhhhhh
Confidence 01111211 11111 2356788876643211 0122222111 11 12246678999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceeeCC
Q 047915 257 TCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIK 321 (393)
Q Consensus 257 ~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~ 321 (393)
+||++|+|++++++|||+.++++++|++++.+++|+++|....+. ..+++|+|+|++|++++++
T Consensus 238 ~a~~~~~t~~~~l~aa~~~~l~~~~~~~~~~i~~~~~~R~~~~~~-~~~~vG~~~~~~P~~i~~~ 301 (301)
T PF00668_consen 238 FAKQYGVTPFAVLLAAFALALSRLTGQDDVVIGTPVSGRPRSGPG-FSNTVGPFVNTLPVRIDVD 301 (301)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEE---TTTSCG-GGGS-SS--EEEEEEEE--
T ss_pred hhhhhcccchhhhhhhhhhhhhhccccceeeecccccCCCCCCcC-hhhCeeeEeEEEEEEEEcC
Confidence 999999999999999999999999999999999999999972222 2579999999999998874
No 5
>PRK12316 peptide synthase; Provisional
Probab=99.97 E-value=3e-30 Score=308.79 Aligned_cols=307 Identities=14% Similarity=0.105 Sum_probs=226.0
Q ss_pred cCcccc-cchhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeee
Q 047915 17 IASGTE-YSWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKS 92 (393)
Q Consensus 17 ~l~~~E-~~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (393)
+|+..- .+|+.. .....||+...++++|++|.++|++||+.+++|||+||++|...++++.+.+.... .+.+..
T Consensus 51 plS~~Q~~lw~~~~l~~~~~~yn~~~~~~i~g~ld~~~l~~A~~~vv~rHe~LRt~f~~~~~~~~q~v~~~~--~~~~~~ 128 (5163)
T PRK12316 51 RLSYAQQRMWFLWQLEPQSGAYNLPSAVRLNGPLDRQALERAFASLVQRHETLRTVFPRGADDSLAQVPLDR--PLEVEF 128 (5163)
T ss_pred CCCHHHHHHHHHHHhCCCCCcchhcEEEEEeCCCCHHHHHHHHHHHHHHhhhceEEEEeeCCeEEEEECCCC--CCCccE
Confidence 566554 455543 33457999999999999999999999999999999999999987766666554332 344444
Q ss_pred cccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHH
Q 047915 93 FNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKE 172 (393)
Q Consensus 93 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~ 172 (393)
+|++.. .+......+.+...++..+ ||++ .++|++|+.+++.+++++.|++.+||+|+||||+.+|++|
T Consensus 129 ~d~~~~------~~~~~~~~~~~~~~~~~~~-pfdl----~~~pl~r~~l~~~~~~~~~l~l~~HHii~Dg~S~~~l~~e 197 (5163)
T PRK12316 129 EDCSGL------PEAEQEARLRDEAQRESLQ-PFDL----CEGPLLRVRLLRLGEEEHVLLLTLHHIVSDGWSMNVLIEE 197 (5163)
T ss_pred EECCCC------ChhhHHHHHHHHHHHhhcC-CCCC----CCCCceEEEEEEECCCcEEEEEcccceeechhHHHHHHHH
Confidence 443210 1100122233334444566 9999 6899999999998888999999999999999999999999
Q ss_pred HHHHHhcCCCccccccCCCChhHHhhc-------CC--CcchhHHHHhhhhhhhcccccccccccCCcC--C-CCCCccc
Q 047915 173 LLLVLVSDDDQEQEGRGEVNLAIEALI-------PK--GKAKKALWARGRDMLTYSVNSLKSTNLKFID--A-KSPRSSQ 240 (393)
Q Consensus 173 l~~~y~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~--~-~~~~~~~ 240 (393)
|.++|.+..........+.+.++.++. .. ....++||++.+... .+...+|... + .......
T Consensus 198 l~~~Y~~~~~~~~~~l~~~~~~y~dy~~~q~~~~~~~~~~~~~~yW~~~l~~~------~~~~~lp~~~~~~~~~~~~~~ 271 (5163)
T PRK12316 198 FSRFYSAYATGAEPGLPALPIQYADYALWQRSWLEAGEQERQLEYWRAQLGEE------HPVLELPTDHPRPAVPSYRGS 271 (5163)
T ss_pred HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHHHHHhCCC------CccccCCCCCCCCCCCCcCCe
Confidence 999996422111110001111222221 11 112467888776321 1222345432 1 1123445
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceeeC
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLI 320 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v 320 (393)
.+.+.++.+.+.+|.++||++|+|++++++|||++++++++|++++.+|+|+++|...+ . ..++|+|+|++|+++++
T Consensus 272 ~~~~~l~~~~~~~l~~~a~~~~~T~~~~llaa~a~lL~~~tg~~dv~ig~pvs~R~~~~--~-~~~vG~f~n~lplr~~~ 348 (5163)
T PRK12316 272 RYEFSIDPALAEALRGTARRQGLTLFMLLLGAFNVLLHRYSGQTDIRVGVPIANRNRAE--V-EGLIGFFVNTQVLRSVF 348 (5163)
T ss_pred eEEEecCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCeEEEeeeCCCCchh--h-hcceeeeeeeEEEEEec
Confidence 67789999999999999999999999999999999999999999999999999997532 2 56999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 321 KSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 321 ~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
+++.+|.++++++++++.++++|++
T Consensus 349 ~~~~tf~~~l~~v~~~~~~a~~hq~ 373 (5163)
T PRK12316 349 DGRTRVATLLAGVKDTVLGAQAHQD 373 (5163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999986
No 6
>PRK05691 peptide synthase; Validated
Probab=99.97 E-value=5.4e-30 Score=304.45 Aligned_cols=307 Identities=12% Similarity=0.072 Sum_probs=223.9
Q ss_pred cCcccc-cchhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeee
Q 047915 17 IASGTE-YSWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKS 92 (393)
Q Consensus 17 ~l~~~E-~~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (393)
+|++.- .+|+.. .....||....++++|.+|.++|++||+.+++|||+|||+|...++++.+.+.... .+.+..
T Consensus 1730 pls~~Q~~l~~~~~~~~~~~~Yn~~~~~~l~g~ld~~~L~~A~~~lv~rH~~LRT~f~~~~~~~~q~v~~~~--~~~~~~ 1807 (4334)
T PRK05691 1730 PLSYSQQRMWFLWQMEPDSPAYNVGGMARLSGVLDVDRFEAALQALILRHETLRTTFPSVDGVPVQQVAEDS--GLRMDW 1807 (4334)
T ss_pred CCCHHHHhHHHhhhccCCCcccceeeeehccCCCCHHHHHHHHHHHHHhCCcceEEEEccCCeEEEEECCCC--CCCeeE
Confidence 566653 445432 23356999999999999999999999999999999999999987766666554322 333333
Q ss_pred cccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHH
Q 047915 93 FNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKE 172 (393)
Q Consensus 93 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~ 172 (393)
.+++.. .+......+....+++..+ ||++ .++|++|+.+++.++++++|++.+||+++||||+.+|+++
T Consensus 1808 ~d~~~~------~~~~~~~~~~~~~~~~~~~-~fdl----~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~ll~~e 1876 (4334)
T PRK05691 1808 QDFSAL------PADARQQRLQQLADSEAHQ-PFDL----ERGPLLRACLVKAAEREHYFVLTLHHIVTEGWAMDIFARE 1876 (4334)
T ss_pred eeccCC------ChHhHHHHHHHHHHHHHhc-CCCC----CCCceeEEEEEEeCCCcEEEEEecchhhhhhhhHHHHHHH
Confidence 332210 1111123344455566666 8999 6899999999998888999999999999999999999999
Q ss_pred HHHHHhcCCCccccccCCCChhHHhh-------cCC--CcchhHHHHhhhhhhhcccccccccccCCcCCC---CCCccc
Q 047915 173 LLLVLVSDDDQEQEGRGEVNLAIEAL-------IPK--GKAKKALWARGRDMLTYSVNSLKSTNLKFIDAK---SPRSSQ 240 (393)
Q Consensus 173 l~~~y~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~ 240 (393)
|..+|.+..........+.+..+.++ ... .....+||++.+... .+...+|...+. ......
T Consensus 1877 l~~~Y~~~~~~~~~~~~~~~~~y~dy~~~~~~~l~~~~~~~~~~yW~~~L~~~------~~~~~lp~~~~~~~~~~~~~~ 1950 (4334)
T PRK05691 1877 LGALYEAFLDDRESPLEPLPVQYLDYSVWQRQWLESGERQRQLDYWKAQLGNE------HPLLELPADRPRPPVQSHRGE 1950 (4334)
T ss_pred HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhcChhhHHHHHHHHHHhcCC------CCcccCCCCCCCCcccCcCce
Confidence 99999532111100000111122221 111 122457888876431 111234433211 123344
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceeeC
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLI 320 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v 320 (393)
.....++.+.+.+|.++|+++|+|++++++|||++++++++|++++.+|+|+++|... .. ..++|+|+|++|+++++
T Consensus 1951 ~~~~~l~~~~~~~l~~~a~~~~vT~~~~l~aA~a~lL~r~sg~~dvv~G~~vsgR~~~--~~-~~~vG~fvntlPlrv~~ 2027 (4334)
T PRK05691 1951 LYRFDLSPELAARVRAFNAQRGLTLFMTMTATLAALLYRYSGQRDLRIGAPVANRIRP--ES-EGLIGAFLNTQVLRCQL 2027 (4334)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCeEEEecccCCCch--hh-hcceeeeeeeeeEEeec
Confidence 5678899999999999999999999999999999999999999999999999999753 23 57999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 321 KSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 321 ~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
+++.+|.++++++++++.++++|++
T Consensus 2028 ~~~~t~~~ll~~v~~~~~~~~~hq~ 2052 (4334)
T PRK05691 2028 DGQMSVSELLEQVRQTVIEGQSHQD 2052 (4334)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999976
No 7
>PRK05691 peptide synthase; Validated
Probab=99.97 E-value=2e-29 Score=299.57 Aligned_cols=307 Identities=15% Similarity=0.099 Sum_probs=223.4
Q ss_pred cCcccc-cchhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeee
Q 047915 17 IASGTE-YSWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKS 92 (393)
Q Consensus 17 ~l~~~E-~~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (393)
++++.- .+|+.. .....||....+++.|.+|.++|++||+.+++|||+||++|...++++.+.+.... .+.+..
T Consensus 677 plS~~Q~~lw~~~~~~~~~~~Y~~~~~~~l~g~ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~--~~~~~~ 754 (4334)
T PRK05691 677 PQSLAQNRLWLLWQLDPQSAAYNIPGGLHLRGELDEAALRASFQRLVERHESLRTRFYERDGVALQRIDAQG--EFALQR 754 (4334)
T ss_pred CCCHHHHHHHHHHHhCCCCcceeccEEEEEeccCCHHHHHHHHHHHHHHhhhhcEEEEccCCeEEEEECCCC--CCcceE
Confidence 555554 345432 33467999999999999999999999999999999999999977665555543322 344444
Q ss_pred cccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHH
Q 047915 93 FNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKE 172 (393)
Q Consensus 93 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~ 172 (393)
+|++.. .+......+.+..+++.+. ||++ .++|++|+.+++++++++.|++.+||+++||||+.+|+++
T Consensus 755 ~d~~~~------~~~~~~~~~~~~~~~~~~~-~fdl----~~~pl~R~~l~~~~~~~~~l~l~~HHii~DG~S~~ll~~e 823 (4334)
T PRK05691 755 IDLSDL------PEAEREARAAQIREEEARQ-PFDL----EKGPLLRVTLVRLDDEEHQLLVTLHHIVADGWSLNILLDE 823 (4334)
T ss_pred EeCCCC------ChHHHHHHHHHHHHHHhcC-CCCC----CCCCceEEEEEEEcCCeEEEEEeeCceeeccchHHHHHHH
Confidence 443211 1111122334445566666 9999 7899999999998888999999999999999999999999
Q ss_pred HHHHHhcCCCccccccCCCChhHHhhc-------CCC--cchhHHHHhhhhhhhcccccccccccCCcCCCC---CCccc
Q 047915 173 LLLVLVSDDDQEQEGRGEVNLAIEALI-------PKG--KAKKALWARGRDMLTYSVNSLKSTNLKFIDAKS---PRSSQ 240 (393)
Q Consensus 173 l~~~y~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~~---~~~~~ 240 (393)
|..+|.+..........+.+..+.++. ... ...++||++.+... .+...+|...+.. .....
T Consensus 824 l~~~Y~~~~~g~~~~l~~~~~~y~dy~~~~~~~l~~~~~~~~~~yW~~~L~~~------~~~~~l~~~~~~~~~~~~~~~ 897 (4334)
T PRK05691 824 FSRLYAAACQGQTAELAPLPLGYADYGAWQRQWLAQGEAARQLAYWKAQLGDE------QPVLELATDHPRSARQAHSAA 897 (4334)
T ss_pred HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhcChhHHHHHHHHHHHhCCC------CCccCCCCCCCCCccCCcCce
Confidence 999995321111000001111222221 111 12457888876431 1111233322111 12234
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceeeC
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLI 320 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v 320 (393)
.....++.+.+.+|.++|+++|+|++++++|||.+.+++|+|++++.+|+|+++|+.. .. ..++|+|+|++|+++++
T Consensus 898 ~~~~~l~~~~~~~L~~~a~~~gvT~~~vl~aa~allL~rytg~~dv~~G~~~sgR~~~--~~-~~~vG~fintlplr~~~ 974 (4334)
T PRK05691 898 RYSLRVDASLSEALRGLAQAHQATLFMVLLAAFQALLHRYSGQGDIRIGVPNANRPRL--ET-QGLVGFFINTQVLRAQL 974 (4334)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCCCEEEEecccCCCch--hh-hcceeeeeeeeeEEEec
Confidence 5567899999999999999999999999999999999999999999999999999743 23 57999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 321 KSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 321 ~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
+++.+|.++++++++++.++++|+.
T Consensus 975 ~~~~t~~~ll~~v~~~~~~a~~h~~ 999 (4334)
T PRK05691 975 DGRLPFTALLAQVRQATLGAQAHQD 999 (4334)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999976
No 8
>PRK12316 peptide synthase; Provisional
Probab=99.97 E-value=4.3e-29 Score=299.02 Aligned_cols=303 Identities=14% Similarity=0.136 Sum_probs=223.2
Q ss_pred cCcccc-cchhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeee
Q 047915 17 IASGTE-YSWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKS 92 (393)
Q Consensus 17 ~l~~~E-~~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (393)
++++.. .+|+.. .....||+...+++.|.+|.++|++||+.+++|||+||++|...++++.+++.... ...+..
T Consensus 2604 pls~~Q~~lw~~~~~~~~~~~Y~~~~~~~l~g~ld~~~L~~A~~~lv~rH~~LRt~f~~~~~~~~q~v~~~~--~~~~~~ 2681 (5163)
T PRK12316 2604 PLSHAQQRQWFLWQLEPESAAYHLPSALHLRGVLDQAALEQAFDALVLRHETLRTRFVEVGEQTRQVILPNM--SLRIVL 2681 (5163)
T ss_pred CCChHHHhHHHHcccCCCccccccceEEEEcCCcCHHHHHHHHHHHHHHhhHhhcceeeeCCeEEEEECCCC--Ccccee
Confidence 455443 445433 33457999999999999999999999999999999999999987766666554322 122222
Q ss_pred cccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHH
Q 047915 93 FNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKE 172 (393)
Q Consensus 93 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~ 172 (393)
.+. . ......+.+.+.++..+ ||++ .++|++|+.+++.+++++.+++.+||+++||||+.+|++|
T Consensus 2682 ~~~--------~--~~~~~~~~~~~~~~~~~-~fdl----~~~pl~r~~l~~~~~~~~~l~l~~HHii~DG~S~~~l~~e 2746 (5163)
T PRK12316 2682 EDC--------A--GVADAAIRQRVAEEIQR-PFDL----ARGPLLRVRLLALDGQEHVLVITQHHIVSDGWSMQVMVDE 2746 (5163)
T ss_pred ecc--------c--cCCHHHHHHHHHHHhhC-CCCC----CCCCcEEEEEEEECCCeEEEEEecCcCcccHhHHHHHHHH
Confidence 110 0 11134455667777777 9999 6899999999998888899999999999999999999999
Q ss_pred HHHHHhcCCCccccccCCCChhHHhhc-------CC--CcchhHHHHhhhhhhhcccccccccccCCcCC---CCCCccc
Q 047915 173 LLLVLVSDDDQEQEGRGEVNLAIEALI-------PK--GKAKKALWARGRDMLTYSVNSLKSTNLKFIDA---KSPRSSQ 240 (393)
Q Consensus 173 l~~~y~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~---~~~~~~~ 240 (393)
|..+|.+..........+.+..+.++. .. ....++||++.+... .+...+|...+ .......
T Consensus 2747 L~~~Y~~~~~g~~~~l~~~~~~y~dy~~~~~~~~~~~~~~~~~~yW~~~L~~~------~~~~~lp~~~~~~~~~~~~~~ 2820 (5163)
T PRK12316 2747 LVQAYAGARRGEQPTLPPLPLQYADYAAWQRAWMDSGEGARQLDYWRERLGGE------QPVLELPLDRPRPALQSHRGA 2820 (5163)
T ss_pred HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHhcCC------CCcccCCccCCCCccCCCCCc
Confidence 999996411111100001111222211 11 122457888876432 11123443321 1123344
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceeeC
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLI 320 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v 320 (393)
.....++.+.+.+|.++||++|+|++++++|||+.++++++|++++.+|+|+++|... .. ..++|+|+|++|+++++
T Consensus 2821 ~~~~~l~~~~~~~L~~~a~~~~vT~~~~l~aA~a~~L~r~tg~~dv~iG~pvsgR~~~--~~-~~~iG~fvntlPlrv~l 2897 (5163)
T PRK12316 2821 RLDVALDVALSRELLALARREGVTLFMLLLASFQVLLHRYSGQSDIRVGVPIANRNRA--ET-ERLIGFFVNTQVLRAQV 2897 (5163)
T ss_pred eEEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCch--hH-HhhhhheecceeEEEec
Confidence 5678899999999999999999999999999999999999999999999999999643 23 57999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 321 KSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 321 ~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
+++.+|.++++++++++.++++|++
T Consensus 2898 ~~~~t~~~ll~~v~~~~~~~~~hq~ 2922 (5163)
T PRK12316 2898 DAQLAFRDLLGQVKEQALGAQAHQD 2922 (5163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999976
No 9
>PRK09294 acyltransferase PapA5; Provisional
Probab=99.97 E-value=2e-28 Score=237.98 Aligned_cols=299 Identities=16% Similarity=0.116 Sum_probs=200.8
Q ss_pred CCCCccCcccccchhhcccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeee
Q 047915 12 PKGGRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVK 91 (393)
Q Consensus 12 ~~~~R~l~~~E~~~~~~~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (393)
-.+-|+|+..|+.|.. .+.+ ....++++|.+|.++|++||++++++||+||++|...+++..+++.... ....+.
T Consensus 4 ~~~~~~L~~~~~~f~~---~~~~-~~~~~~l~g~lD~~~L~~Al~~l~~rhp~Lr~~~~~~~~~~~~~~~~~~-~~~~v~ 78 (416)
T PRK09294 4 GSVIRKLAPSEEVFAR---YEAF-TGYTAHLRGVLDIDALSDAFDALLRAHPVLAAHLEQDSDGGWELVADDL-LHPGIV 78 (416)
T ss_pred CCcccCCchHHhhhhc---cCce-EEEEEEEcCCCCHHHHHHHHHHHHHhCHHhhEEEEECCCCceEEeeCCc-CCCCeE
Confidence 4568999999998877 3344 4579999999999999999999999999999999654433333332221 122333
Q ss_pred ecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCC-CceEEEEEEcCCCceEEEEEeccccchHhhHHHHH
Q 047915 92 SFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTT-DMLYASSYALPDAKWVVALRLHVAACDRTTAVSLL 170 (393)
Q Consensus 92 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~ 170 (393)
.++.+ . .++ .. ++++ ..+ +++++.++. +++++.|++.+||+++||||...|+
T Consensus 79 ~~d~~-------~-----~~~---------~~-~~~l----~~~~~l~~~~~~~-~~~~~~l~l~~hH~i~DG~S~~~ll 131 (416)
T PRK09294 79 VVDGD-------A-----ARP---------LP-ELQL----DQGVSLLALDVVP-DDGGARVTLYIHHSIADAHHSASLL 131 (416)
T ss_pred EEecc-------c-----ccc---------cC-CCCC----CCCCceEEEEEEE-cCCCEEEEEEeccEeEccccHHHHH
Confidence 33311 0 000 22 5666 344 488888775 6678899999999999999999999
Q ss_pred HHHHHHHhcCCC-cccc--ccCCCChhHHhhcCCCcc-------hhHHHHhhhhhhhcccccccccccC-CcCCCCCCcc
Q 047915 171 KELLLVLVSDDD-QEQE--GRGEVNLAIEALIPKGKA-------KKALWARGRDMLTYSVNSLKSTNLK-FIDAKSPRSS 239 (393)
Q Consensus 171 ~~l~~~y~~~~~-~~~~--~~~~~~~~~~~~~~~~~~-------~~~~w~~~~~~~~~~~~~~~~~~lp-~~~~~~~~~~ 239 (393)
++|+.+|.+... .... ...+.+.++++.+..... ...+|... ..+.....+ ..+ ...+..+...
T Consensus 132 ~el~~~Y~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~~~---~~~~lp~~~--~~~~~~~~~~~~~~ 206 (416)
T PRK09294 132 DELWSRYTDVVTTGDPGPIRPQPAPQSLEAVLAQRGIRRQALSGAERFMPAM---YAYELPPTP--TAAVLAKPGLPQAV 206 (416)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCcCHHHHHHhcCCCcccccchhhhhhhh---ccccCCCCC--cCcCCCCCCCCCCC
Confidence 999999953211 1110 011122344544322110 01122211 011111111 011 1111122233
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC--CceEEEeeccccccCCCCCCCCceeeEeeeccce
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQ--RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNT 317 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~--~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~ 317 (393)
......++++.+++|.+.||++|+|++++++||++.++++++++ ..+.+++|+|+|++++++.....++++++.....
T Consensus 207 ~~~~~~l~~~~~~~L~~~a~~~~~t~~~~l~Aa~~~~l~r~~~~~~~~i~~~~pv~~R~~l~p~~~~~~~~n~~g~~~~~ 286 (416)
T PRK09294 207 PVTRCRLSKAQTSSLAAFGRRHRLTVNALVSAAILLAEWQLRRTPHVPLPYVYPVDLRFRLTPPVAATEGTNLLGAATYL 286 (416)
T ss_pred ceeEEEeCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCCCCCceeeecchhhHhhcCCCCCcccceeeEeeeeee
Confidence 46778999999999999999999999999999999999999876 3667889999999887654334566777766666
Q ss_pred eeCCCCCcHHHHHHHHHHHHHhhhccCCCC
Q 047915 318 HLIKSGEKLGDLAKKIYTAFVNSKHCNRHF 347 (393)
Q Consensus 318 ~~v~~~~~f~~la~~v~~~~~~~~~~~~~~ 347 (393)
+++..+.+|+++++++++++++.++++...
T Consensus 287 ~~~~~~~sf~ela~~v~~~~~~~l~~~~v~ 316 (416)
T PRK09294 287 AEIGPDTDIVDLARAIAATLRADLADGVIQ 316 (416)
T ss_pred ccccCCCCHHHHHHHHHHHHhhhhhcceee
Confidence 777778899999999999999999887643
No 10
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=99.97 E-value=9.9e-28 Score=237.30 Aligned_cols=362 Identities=15% Similarity=0.156 Sum_probs=220.3
Q ss_pred cCcccccchhhcccCCcc-eeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCC--------CCceEeeCC--CC
Q 047915 17 IASGTEYSWCRAVPGGTG-IAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPS--------KNTFSFVTS--PT 85 (393)
Q Consensus 17 ~l~~~E~~~~~~~~~~~~-~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~--------~~~~~~~~~--~~ 85 (393)
+||.+|.++...+..|.| |+.++.+++..++.+.|..|++.+|.+||+|++.+..+++ +..+...+- .-
T Consensus 1 ~lg~lE~~~~~r~~~~~y~n~~v~a~y~~~~~~~~l~~AL~~~I~~~P~L~~~i~~~~~~~~~~~~~~~~~~~~P~~~~l 80 (480)
T PF07247_consen 1 RLGFLERYFYARHRLGLYSNFIVTATYNKPLSKNQLYHALRSVILKHPILSVNIFGEDDPEDDAYYNSDNYTVRPYFKRL 80 (480)
T ss_pred CCChhHHHHHHhhhcCCceeEEEEEEECCCCCHHHHHHHHHHHHHhCccEEEEEeccCCcccccccccccceeccccccc
Confidence 689999988777666655 6888999999999999999999999999999999997530 011110000 00
Q ss_pred cceeeeecccCccc-cccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCC--CceEEEEEeccccch
Q 047915 86 TFIQVKSFNLSSTS-KILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPD--AKWVVALRLHVAACD 162 (393)
Q Consensus 86 ~~i~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~--~~~~l~l~~hH~i~D 162 (393)
+.|.+..+-..... +. ...+...++++.+.+. +.+- ++.. .+.|+||+.+++... +...+++.+||+++|
T Consensus 81 ~~I~l~dvV~~~~~e~~-~~~d~~~~~~l~~~l~-~~~~-~~~~----~~~P~Wrl~vl~~~~~~~~~~i~f~~~H~i~D 153 (480)
T PF07247_consen 81 PSIDLDDVVSFEQREEF-RDEDEKFDEELLEILN-NHNF-PYDD----PTKPLWRLIVLPNEDDESFQFIVFVFHHAIFD 153 (480)
T ss_pred CeEEHHHeeccCCcccc-ccCCccccHHHHHHHh-hccc-CCCC----CCCCCeEEEEECCCCCCcceEEEEEecccccc
Confidence 12333221000000 00 0000011233333332 2222 3443 355999999998432 245788999999999
Q ss_pred HhhHHHHHHHHHHHHhcCCCccc----------cc----cCCCChhHHhhcCCCcch----hHHHHhhhhhhhccccccc
Q 047915 163 RTTAVSLLKELLLVLVSDDDQEQ----------EG----RGEVNLAIEALIPKGKAK----KALWARGRDMLTYSVNSLK 224 (393)
Q Consensus 163 G~S~~~~~~~l~~~y~~~~~~~~----------~~----~~~~~~~~~~~~~~~~~~----~~~w~~~~~~~~~~~~~~~ 224 (393)
|+|+.+|+++|++.++....... .. ...+|+++++.+...... ..+|...+.- .+.....
T Consensus 154 G~Sg~~Fh~~ll~~L~~~~~~~~~~~~~~i~~~~~~~~~~~~LP~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 231 (480)
T PF07247_consen 154 GMSGKIFHEDLLEALNSLSSDPEPDDNDVIFDPSSDVEHLPSLPPPIEELIKSSPSLYFLPKSLWSSFIFP-SLFFSKW- 231 (480)
T ss_pred cHHHHHHHHHHHHHHhhccccccccccCceecCCcccccccCCCcCHHHhhhccccHHHHHHHHHHHhhhh-hcccccc-
Confidence 99999999999999964322111 00 012344566555433221 1222221100 0000000
Q ss_pred ccccCCc---CCC-CCCcccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc----CCC--CceEEEeeccc
Q 047915 225 STNLKFI---DAK-SPRSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS----DNQ--RKYAVATLTDC 294 (393)
Q Consensus 225 ~~~lp~~---~~~-~~~~~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~----~g~--~~~~i~~pv~~ 294 (393)
...|.. .+. .+..+....+.++++.+++|++.||++|+|++++|+|+++.++++. ... ..+.+.+|+|+
T Consensus 232 -~~~~~~~~~~~~~~~~~t~~~~~~i~~~~~~~ll~~CR~~~~TlT~~L~al~~~al~~~~~~~~~~~~~~~~~~~pvnl 310 (480)
T PF07247_consen 232 -SDKPIFATIPPIPKPFKTRYRSLSISPEELKKLLKACRKHGTTLTALLHALIALALSKVQLPKPKSEKSSFKISTPVNL 310 (480)
T ss_pred -ccCCccCCCCccccCCcceEEEEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhcccccccCceEEEEeeeeC
Confidence 001110 111 1234556778999999999999999999999999999999999973 122 46888999999
Q ss_pred cccCCCCCC---CCceeeEeeeccc-----eeeC--CCCCcHHHHHHHHHHHHHhhhccCCCCCCcch--HHHHHH----
Q 047915 295 RSILEPPLS---NHRFGFYHSAIMN-----THLI--KSGEKLGDLAKKIYTAFVNSKHCNRHFSDMAD--LNFLMC---- 358 (393)
Q Consensus 295 R~~~~~~~~---~~~~G~~~~~~~~-----~~~v--~~~~~f~~la~~v~~~~~~~~~~~~~~~~~~~--l~~l~~---- 358 (393)
|++++.... ...+|.+++.... .... +....||++|+++++++.+.++++..+..++. ..++..
T Consensus 311 R~~~p~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~d~ 390 (480)
T PF07247_consen 311 RRFLPEDSELRDEYSYGNFVGGIDFSYSISPVSASRGSSENFWELARQIQKEIKESIKNGKSLNGVGFLMNDFLLKYVDI 390 (480)
T ss_pred CCCCCccccccccccceeEEEccceeeecccccccccchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHhccCCH
Confidence 999976543 3578888887433 1222 22457999999999999999888776665543 001110
Q ss_pred -Hhh-cCCCCCCCCccceeeeeeee-cCCCCCC
Q 047915 359 -KAI-ENPSLTPASSLRSSFIYQLK-NDIGNPN 388 (393)
Q Consensus 359 -~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 388 (393)
..+ ...+-...+++-.+++|+|+ +..|+|.
T Consensus 391 ~~~~~~~~~~~r~~t~evSNLG~~~~~~~~~~~ 423 (480)
T PF07247_consen 391 WDFFKSKIGKPRRSTFEVSNLGVFDFEENGKWK 423 (480)
T ss_pred HHHHHhhcCCCCCCcEEEEeCCcccCCCCCCeE
Confidence 111 11223335778888889998 4555443
No 11
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=99.95 E-value=4.5e-26 Score=223.59 Aligned_cols=308 Identities=13% Similarity=0.048 Sum_probs=192.7
Q ss_pred Ccccccchhhccc-CCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCC---CCCceEeeCCCCcceeeeec
Q 047915 18 ASGTEYSWCRAVP-GGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNP---SKNTFSFVTSPTTFIQVKSF 93 (393)
Q Consensus 18 l~~~E~~~~~~~~-~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~---~~~~~~~~~~~~~~i~~~~~ 93 (393)
|++.+..|+.+.. ...|++...+.++|++|.+.|++|++.++.+||.||++|...+ +++.|+..... .+...+.
T Consensus 1 ls~~D~~~l~~e~~~~~~~~~~~~~l~g~ld~~~l~~al~~~~~rh~~LR~~~~~~~~~~~~~~~~~~~~~--~~~~~v~ 78 (446)
T TIGR02946 1 LSPVDAAFLRLETPTRPMHIGALAVFEGPLSFEALRALLESRLPLAPRFRQRLREVPLGLGHPYWVEDPDF--DLDYHVR 78 (446)
T ss_pred CCHHHHHHHhccCCCCCceEEEEEEEcCCccHHHHHHHHHHhhccCChhhcccccCCCCCCCcEEeeCCCC--ChHHhhc
Confidence 6778888887643 4568888999999999999999999999999999999998753 23444321111 1211111
Q ss_pred ccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEE-cCCCceEEEEEeccccchHhhHHHHHHH
Q 047915 94 NLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYA-LPDAKWVVALRLHVAACDRTTAVSLLKE 172 (393)
Q Consensus 94 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~-~~~~~~~l~l~~hH~i~DG~S~~~~~~~ 172 (393)
. .+..+...++++.+.+.+...+ ||+. . .|+||+.+++ ++++++.+++.+||+++||||+..++++
T Consensus 79 ~-------~~~~~~~~~~~~~~~~~~~~~~-p~dl----~-~Pl~r~~li~~~~~~~~~l~~~~HH~i~DG~S~~~l~~~ 145 (446)
T TIGR02946 79 R-------VALPAPGTRRELLELVGRLMST-PLDR----S-RPLWEMHLIEGLAGGRFAVLTKVHHALADGVAGLRLLAR 145 (446)
T ss_pred c-------ccCCCCCCHHHHHHHHHHHhcC-CCCC----C-CCCeEEEEEeccCCCeEEEEEEeehhhhchHHHHHHHHH
Confidence 0 0011112245566667777777 9998 4 4999999999 7788899999999999999999999999
Q ss_pred HHHHHhcCCCccccccCCCChhHHhhcCCCcc--hhHHHHhhhhhhhcccc----------cccccccCCcCCCC---CC
Q 047915 173 LLLVLVSDDDQEQEGRGEVNLAIEALIPKGKA--KKALWARGRDMLTYSVN----------SLKSTNLKFIDAKS---PR 237 (393)
Q Consensus 173 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~----------~~~~~~lp~~~~~~---~~ 237 (393)
+...|........... +......+....... ....|.+......++.. ......+|+..+.+ ..
T Consensus 146 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (446)
T TIGR02946 146 LLDDDPDPPPLPAPPP-PPQPSTRGLLSGALSGLPSALLRRVASTAPGVVRAAGRAVEGVARSARPALPFTAPPTPLNGP 224 (446)
T ss_pred HcCCCCCCCCCCCCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCcCCCC
Confidence 9998843221110000 011111111100000 00112111111001000 00111223222111 11
Q ss_pred cccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC------ceEEEeeccccccCCCCCCCCceeeEe
Q 047915 238 SSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQR------KYAVATLTDCRSILEPPLSNHRFGFYH 311 (393)
Q Consensus 238 ~~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~------~~~i~~pv~~R~~~~~~~~~~~~G~~~ 311 (393)
.+....+.+....+..|++.||+.|+|+|++++||+..+++++.++. .+.+++|+++|...+. ..+|+++
T Consensus 225 ~~~~r~~~~~~~~~~~l~~~a~~~g~T~ndvllaa~~~al~~~~~~~~~~~~~~i~~~~pv~~R~~~~~----~~~~N~~ 300 (446)
T TIGR02946 225 ISRKRRFAAQSLPLADVKAVAKAFGVTINDVVLAAVAGALRRYLEERGELPDDPLVAMVPVSLRPMEDD----SEGGNQV 300 (446)
T ss_pred CCccceEEeeccCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeeeccccccC----CCCCCEE
Confidence 12233466777788889999999999999999999999999986442 3999999999986432 2344444
Q ss_pred eeccceeeCCCCCcHHHHHHHHHHHHHhhhccCCC
Q 047915 312 SAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRH 346 (393)
Q Consensus 312 ~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~~~ 346 (393)
+.+.+.+.++.. ++.+.+++|++++...+++...
T Consensus 301 ~~~~~~l~~~~~-~~~~~l~~v~~~~~~~k~~~~~ 334 (446)
T TIGR02946 301 SAVLVPLPTGIA-DPVERLSAIHASMTRAKESGQA 334 (446)
T ss_pred EEEEecCCCCCC-CHHHHHHHHHHHHHHHHHhHhh
Confidence 444444444444 4667779999999998887654
No 12
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=99.80 E-value=1.3e-17 Score=151.62 Aligned_cols=298 Identities=13% Similarity=0.048 Sum_probs=185.7
Q ss_pred CccCcccccchhhcccC-CcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEee-CCCCcceeeee
Q 047915 15 GRIASGTEYSWCRAVPG-GTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFV-TSPTTFIQVKS 92 (393)
Q Consensus 15 ~R~l~~~E~~~~~~~~~-~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~-~~~~~~i~~~~ 92 (393)
.++.-..|.+++..+-. ...+....+.+.+.+|.++|++|++..+..-|+|.|.|.+...++.|... +-..+.+....
T Consensus 5 ~~~a~~~d~f~~~~d~~i~~htl~~vi~f~~~fni~~lkkAl~~svka~piL~c~f~eg~~~~~Wq~i~d~~v~~~~i~l 84 (439)
T COG4908 5 LYPAEISDMFIYADDYKINDHTLHYVITFGDKFNIDRLKKALRYSVKAVPILSCKFSEGEKRPFWQRILDFEVDQIAIHL 84 (439)
T ss_pred eccccHHHHHhhhhhcCcCCceEEEEEEeCCccCHHHHHHHHHHHHHhhhhhhhhhhhcccchhHHHHhcccccceeEEE
Confidence 34444455555542111 12234555667788999999999999999999999999877544554322 21111211111
Q ss_pred cccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHH
Q 047915 93 FNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKE 172 (393)
Q Consensus 93 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~ 172 (393)
.. + ..+++..+....+.+.+..+. . ..+|.+++.+++ ......|++.+||++|||+|+...+--
T Consensus 85 ~~---t----~~~~~~~E~~fs~Fi~~k~~~----t----~~~PqI~v~~~r-~~~~d~L~i~lhH~~~DgrG~leyL~l 148 (439)
T COG4908 85 EE---T----KTDEPFGEVAFSRFIVRKLNI----T----KESPQIKVFVVR-QTVGDTLVINLHHAVCDGRGFLEYLYL 148 (439)
T ss_pred ee---e----cccccchhHHHHHHHhccccc----c----cCCCeEEEeeeh-hccCcEEEEEechhhhcchhHHHHHHH
Confidence 10 0 011111233333434443331 1 358999999999 445678999999999999999999999
Q ss_pred HHHHHhcCCCccccccCCCChhHHhhcCCCcchhHHHHhhhh---hh-hccccccc----ccccCCcCCCCCCcccEEEE
Q 047915 173 LLLVLVSDDDQEQEGRGEVNLAIEALIPKGKAKKALWARGRD---ML-TYSVNSLK----STNLKFIDAKSPRSSQVVRL 244 (393)
Q Consensus 173 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~---~~-~~~~~~~~----~~~lp~~~~~~~~~~~~~~~ 244 (393)
|..+|..... .. .+ .|..+...... ........+ .. +...+... ....|......+........
T Consensus 149 l~~~Ys~L~~-~~-~~---~p~~~~~g~k~---i~~v~d~f~~~~~~r~~ik~~~e~n~i~~~fP~~~s~d~~~m~~~~~ 220 (439)
T COG4908 149 LARLYSKLLD-NP-NY---QPNEESKGSKD---IFGVRDLFDVLERKRGLIKNLIERNRITRVFPLGGSPDGPNMSFEKT 220 (439)
T ss_pred HHHHHHhccc-CC-CC---Ccchhhccccc---hhhhhhhhhHHHHHHHhhhhhhccCCCCccCCCcCCCCCCcceEEEE
Confidence 9999942211 11 11 01101000000 000000000 00 01111000 11223221112233346678
Q ss_pred EeCHHHHHHHHHHHHhcCCCHHHHHHHHH--HHHHHhcCCC---CceEEEeeccccccCCCCCCCCceeeEeeeccceee
Q 047915 245 QLNKDDTERILLTCKSRGIKLCGMLAAAG--LIAAHNSDNQ---RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHL 319 (393)
Q Consensus 245 ~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~--~~al~~~~g~---~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~ 319 (393)
.++.+..++|.++||.+|.|+|++++||+ ...+...+.+ +.+.+.+|||.|++++.. +..+|+|.+.+..++.
T Consensus 221 ~I~~~ef~~ikay~k~~gaTiNDiilaa~~~fr~~y~~~~~k~~~~lsi~~~VDlRkyl~sk--~~sI~Nls~~~~i~I~ 298 (439)
T COG4908 221 TIPSDEFKKIKAYAKVHGATINDIILAALLKFRLLYNTTHEKANNYLSIDMPVDLRKYLPSK--EESISNLSSYLTIVIN 298 (439)
T ss_pred ecCHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhhchhhcCeeeeceeeehhhhcccc--ccceeccceeEEEEEe
Confidence 99999999999999999999999999999 6777766655 789999999999998752 3689999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 047915 320 IKSGEKLGDLAKKIYTAFV 338 (393)
Q Consensus 320 v~~~~~f~~la~~v~~~~~ 338 (393)
.+.-.+|.+..+.|+..+.
T Consensus 299 ~dd~~~fe~t~~~vk~~~~ 317 (439)
T COG4908 299 VDDVTDFEKTLEKVKGIMN 317 (439)
T ss_pred ccccccHHHHHHHHHhhcC
Confidence 8888999999999888765
No 13
>PF03007 WES_acyltransf: Wax ester synthase-like Acyl-CoA acyltransferase domain; InterPro: IPR004255 This entry represents the N terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=99.38 E-value=2.1e-11 Score=110.75 Aligned_cols=144 Identities=14% Similarity=0.112 Sum_probs=99.6
Q ss_pred CcccccchhhcccCCc-ceeEEEEEEcCC------CChHHHHHHHHHHHhhcccccceeccCC---CCCceEeeCCCCcc
Q 047915 18 ASGTEYSWCRAVPGGT-GIAVLAILTSKV------PETSGLQDALNKLQSYHPILRSRLHTNP---SKNTFSFVTSPTTF 87 (393)
Q Consensus 18 l~~~E~~~~~~~~~~~-~~~~~~~~l~g~------ld~~~L~~A~~~l~~rhp~LR~~~~~~~---~~~~~~~~~~~~~~ 87 (393)
|++++..|+.+..... .++.....++.+ .+.+.|++.+..-+..+|.||.+++... +.+.|+..+ .
T Consensus 1 Ls~~Da~fl~~e~~~~pmhv~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~p~fr~rv~~~~~~~~~p~W~~d~----~ 76 (263)
T PF03007_consen 1 LSPLDAAFLYMETPSNPMHVGALAIFDPPTDGAPPLDVERLRARLEARLARHPRFRQRVVRVPFGLGRPRWVEDP----D 76 (263)
T ss_pred CChHHHHHHhcCCCCCCceEEEEEEEEcCCCCCCcchHHHHHHHHHHhhccCCccccceecCCCCCCCEEEEECC----C
Confidence 6778888888855444 343333334433 4789999999999999999999998743 335554221 1
Q ss_pred eeeeecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEE-cCCCceEEEEEeccccchHhhH
Q 047915 88 IQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYA-LPDAKWVVALRLHVAACDRTTA 166 (393)
Q Consensus 88 i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~-~~~~~~~l~l~~hH~i~DG~S~ 166 (393)
+.+..+ ...+......+.+++.+.+.+..++ |++. ..|+|+++++. +.+++..+++.+||+++||.|+
T Consensus 77 fDl~~H-----v~~~~l~~pg~~~~l~~~v~~l~~~-pLd~-----~rPlWe~~li~g~~~g~~Al~~k~HHal~DG~~~ 145 (263)
T PF03007_consen 77 FDLDYH-----VRRVALPAPGDRAELQALVSRLAST-PLDR-----SRPLWEVHLIEGLEGGRFALVLKVHHALADGVSL 145 (263)
T ss_pred CChHHc-----eEEecCCCCCCHHHHHHHHHHHhcC-CCCC-----CCCCcEEEEEecCCCCcEEEEEeehhhhhhhHhH
Confidence 222111 1101111223456777777777777 8987 78999999998 4567789999999999999999
Q ss_pred HHHHHHHHHH
Q 047915 167 VSLLKELLLV 176 (393)
Q Consensus 167 ~~~~~~l~~~ 176 (393)
..++..++..
T Consensus 146 ~~l~~~l~~~ 155 (263)
T PF03007_consen 146 MRLLAALLDR 155 (263)
T ss_pred HHHHHHHhCC
Confidence 9999888664
No 14
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=98.95 E-value=2.4e-07 Score=90.63 Aligned_cols=268 Identities=12% Similarity=0.027 Sum_probs=149.1
Q ss_pred ChHHHHHHHHHHHhhcccccceeccCCCCCceEe-eCCCCcceeeeecccCccccccccccccchhHHHHHHHHhhcccc
Q 047915 47 ETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSF-VTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENA 125 (393)
Q Consensus 47 d~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 125 (393)
..+.|++|+.+++..++-|.-|+...+++. ..+ .++. .+.+-....+.++..+..........+ ...+-.
T Consensus 63 ~~~~Lk~sLs~~L~~~~plAGRL~~~~~g~-~~i~c~~~--Gv~fvea~~d~~l~~l~~~~~p~~~~~----~~l~~~-- 133 (436)
T PLN02481 63 PVDVIKKALSKVLVHYYPLAGRLTISSEGK-LIVDCTGE--GVVFVEAEANCSIEEIGDITKPDPETL----GKLVYD-- 133 (436)
T ss_pred HHHHHHHHHHHHhccccCCCCeeeeCCCCc-EEEEEcCC--CeEEEEEEecCcHHHhccccCCCCHHH----HHhCCC--
Confidence 468999999999999999999997654322 222 2222 222222111111110100000000111 111110
Q ss_pred cccc-cCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCCccccccCCCChhHHh-hcCC-C
Q 047915 126 WCNL-KCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEA-LIPK-G 202 (393)
Q Consensus 126 ~~~~-~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~-~~~~-~ 202 (393)
+... +. ...|++.+.+.+...+...|.+++||.++||.|+..|++.+.+.....+. . .++.+.. .+.. .
T Consensus 134 ~~~~~~~-~~~Pll~vQvT~F~~GG~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg~~~-~------~~p~~dr~~l~~~~ 205 (436)
T PLN02481 134 VPGAKNI-LEIPPLTAQVTRFKCGGFVLGLCMNHCMFDGIGAMEFVNSWGETARGLPL-S------VPPFLDRSILRARN 205 (436)
T ss_pred CCCcccc-cccceeeeccceEecCcEEEEEEeccccccHHHHHHHHHHHHHHhcCCCC-C------CCCCcCcccCCCCC
Confidence 1110 11 23577776665555677899999999999999999999999998843221 1 0111100 1100 0
Q ss_pred cchhHHHHhhhhhhhcccccccccccCCcC-CCCCCcccEEEEEeCHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHH
Q 047915 203 KAKKALWARGRDMLTYSVNSLKSTNLKFID-AKSPRSSQVVRLQLNKDDTERILLTCKSRG----IKLCGMLAAAGLIAA 277 (393)
Q Consensus 203 ~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~-~~~~~~~~~~~~~l~~~~t~~l~~~ck~~g----vT~~~~l~Aa~~~al 277 (393)
.....+.. ..+ ......+... ...........+.++++..++|++.|...+ +|-+.++.|-+-.++
T Consensus 206 pp~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~~~~~~~~S~~dal~A~iW~~~ 276 (436)
T PLN02481 206 PPKIEFPH-----QEF----AEIEDVSGTSKLYDDEELVYKSFCFDPEKLEKLKSMALEDGVIKKCSTFEALTAFVWRAR 276 (436)
T ss_pred CCCCCcCc-----ccc----ccccCCccccccccccCceEEEEEECHHHHHHHHHhcccccCCCCcChHHHHHHHHHHHH
Confidence 00000000 000 0000000000 001112234568899999999999996543 688889998777777
Q ss_pred HhcCCC---CceEEEeeccccccCCCCCCCCceeeEeeeccceeeCC--CCCcHHHHHHHHHHHHHhh
Q 047915 278 HNSDNQ---RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIK--SGEKLGDLAKKIYTAFVNS 340 (393)
Q Consensus 278 ~~~~g~---~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~--~~~~f~~la~~v~~~~~~~ 340 (393)
.+..+. ....+..++|+|++..|++....+|+.+........++ .+.++..+|+.|++.+.+.
T Consensus 277 ~rA~~~~~~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~~l~~~~l~~~A~~Ir~~i~~~ 344 (436)
T PLN02481 277 TKALKMLPDQQTKLLFAVDGRSRFNPPLPKGYFGNGIVLTNALTTAGELLENPLSHAVGLVQDAIKMV 344 (436)
T ss_pred HhccCCCCCCeEEEEEEEcCccCCCCCCCCCceeeeeeeccccccHHHHhhCCHHHHHHHHHHHHHHH
Confidence 665432 56788999999999987777778888665433222222 2468999999999998765
No 15
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=98.93 E-value=8.2e-07 Score=86.88 Aligned_cols=267 Identities=15% Similarity=0.099 Sum_probs=149.9
Q ss_pred CChHHHHHHHHHHHhhcccccceeccCCC-CCceEeeCCCCcceeeeecccCccccccccccccchhHHHHHHHHhhccc
Q 047915 46 PETSGLQDALNKLQSYHPILRSRLHTNPS-KNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNEN 124 (393)
Q Consensus 46 ld~~~L~~A~~~l~~rhp~LR~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 124 (393)
+|.+.|++|+.+++..+.-|..|+...++ ...... ++. .+.+-....+.....+.... .... +.+.+
T Consensus 51 ~~~~~Lk~sLs~~L~~~yplaGRl~~~~~g~~~i~c-~~~--Gv~fv~A~~~~~l~~~~~~~--~~~~----~~~l~--- 118 (431)
T PLN02663 51 FDPQVMKEALSKALVPFYPMAGRLRRDEDGRIEIDC-NAE--GVLFVEADTPSVIDDFGDFA--PTLE----LRQLI--- 118 (431)
T ss_pred cCHHHHHHHHHHHHhhccccceeeeECCCCCEEEEE-CCC--CceEEEEecCCCHHHhhccC--CCHH----HHhhc---
Confidence 57899999999999999999999986543 333322 222 22222211111110000000 0011 11111
Q ss_pred ccccc-cCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCCccccccCCCChhHH-hhcCCC
Q 047915 125 AWCNL-KCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIE-ALIPKG 202 (393)
Q Consensus 125 p~~~~-~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~ 202 (393)
|.... ......|++.+.+.....+...|.+++||.++||.|+..|++.+.+....... .. +|.+. ..+...
T Consensus 119 P~~~~~~~~~~~P~l~vQvt~F~cGG~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg~~~-~~------~p~~dr~~l~~~ 191 (431)
T PLN02663 119 PTVDYSGGISSYPLLVLQVTHFKCGGVSLGVGMQHHAADGFSGLHFINTWSDMARGLDL-TI------PPFIDRTLLRAR 191 (431)
T ss_pred CCCCCccccccCceEEEEEEEeccCCEEEEEEecccccchHHHHHHHHHHHHHhcCCCC-CC------CCccCccccCCC
Confidence 22111 00024688777776555567899999999999999999999999988843221 10 01000 011000
Q ss_pred -cchhHHHHhhhhhhhcccccccccccCCcC-CCCCCcccEEEEEeCHHHHHHHHHHHHhc----CCCHHHHHHHHHHHH
Q 047915 203 -KAKKALWARGRDMLTYSVNSLKSTNLKFID-AKSPRSSQVVRLQLNKDDTERILLTCKSR----GIKLCGMLAAAGLIA 276 (393)
Q Consensus 203 -~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~-~~~~~~~~~~~~~l~~~~t~~l~~~ck~~----gvT~~~~l~Aa~~~a 276 (393)
..... +....+. ....+.... ...+.......+.++++..++|++.|... .+|-+.++.|-+...
T Consensus 192 ~p~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~~~~~~~~~~~S~~dalsA~lW~~ 262 (431)
T PLN02663 192 DPPQPA-----FHHVEYQ----PPPSMKTPLETSKPENTTVSIFKLTRDQLNTLKAKSKEDGNTISYSSYEMLAGHVWRS 262 (431)
T ss_pred CCCCCC-----ccccccc----CCCccccccccCCCCCceEEEEEECHHHHHHHHhhCcccCCCcccchHHHHHHHHHhh
Confidence 00000 0000000 000000000 00011123456789999999999998753 267788888877777
Q ss_pred HHhcCCC---CceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCC--CCcHHHHHHHHHHHHHhh
Q 047915 277 AHNSDNQ---RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKS--GEKLGDLAKKIYTAFVNS 340 (393)
Q Consensus 277 l~~~~g~---~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~--~~~f~~la~~v~~~~~~~ 340 (393)
+.+..+. ....+..++|+|++..+++....+|+.+..........+ +.+++.+|..+++.+.+.
T Consensus 263 ~~rA~~~~~~~~~~~~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~~~el~~~~l~~~a~~ir~ai~~~ 331 (431)
T PLN02663 263 ACKARGLPDDQETKLYIATDGRSRLRPQLPPGYFGNVIFTATPIAVAGELQSKPTWYAAGKIHDALVRM 331 (431)
T ss_pred hhhcccCCCccceEEEEEecCCcCCCCCCCCCcccceEEecccccchhhhhhCCHHHHHHHHHHHHHHh
Confidence 7666543 578889999999999877777788887665433332211 346889999999888665
No 16
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=98.90 E-value=5.3e-08 Score=95.38 Aligned_cols=264 Identities=14% Similarity=0.106 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeeecccCccccccccccccchhHHHHHHHHhhcc-ccc
Q 047915 48 TSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNE-NAW 126 (393)
Q Consensus 48 ~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~p~ 126 (393)
.+.|++|+.+++..+|.|.-|+...++...... ++. -+.+-....+.++.-+...+ .... ....+.. .++
T Consensus 55 ~~~Lk~sLs~~L~~~~~lAGrl~~~~~~~~i~c-~d~--Gv~f~~a~~~~~l~~~~~~~--~~~~----~~~~l~p~~~~ 125 (432)
T PF02458_consen 55 VDNLKESLSKTLVHYYPLAGRLRDPDGRLEIDC-NDD--GVEFVEAEADGTLDDLLDLE--PPSE----FLRDLVPQLPV 125 (432)
T ss_dssp HHHHHHHHHHHHTTSGGGGSEEESSCTTTEEEE-CTT--TEEEEEEEESS-HHHHCSSS--CCGG----GGGGGSSS-SS
T ss_pred HHHHHHHHHHhHhhCcccCcEEcccccceEEEE-ecC--CCEEEEEecccceeeccccc--cchH----HHHHHhhhccc
Confidence 578999999999999999999933323332222 322 23333222111111111100 0000 0011110 011
Q ss_pred ccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCCccccccCCCChhHHh-hcCCCcch
Q 047915 127 CNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEA-LIPKGKAK 205 (393)
Q Consensus 127 ~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 205 (393)
.. +. ...|++.+.+.+...+...|.+++||.++||.|+..|++.+.+.+..... ... .|..+. .+....
T Consensus 126 ~~-~~-~~~Pll~vQvt~f~~GG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~~~-~~~-----~p~~~r~~~~~~~-- 195 (432)
T PF02458_consen 126 SS-EG-EDAPLLAVQVTRFKCGGLALGVSFHHAVADGTGFSQFLKAWAEICRGGSP-PSP-----PPVFDRSLLLPPN-- 195 (432)
T ss_dssp SE-EE-TTEBSEEEEEEEETTTEEEEEEEEETTT--HHHHHHHHHHHHHHHHTTCH-HHH-----HHCHSSTTSS-ST--
T ss_pred CC-cc-cccceeEeeeeeecccceeeeeeceeccCcccchhHHHHHHHhhhcCCcc-ccc-----ccccchHHhhhcc--
Confidence 11 01 24689998887777778899999999999999999999999999854311 000 000000 000000
Q ss_pred hHHHHhhhhhhhcccccccccccCCcCCCCCCcccEEEEEeC---HHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHH
Q 047915 206 KALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLN---KDDTERILLTCKSRGI----KLCGMLAAAGLIAAH 278 (393)
Q Consensus 206 ~~~w~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~---~~~t~~l~~~ck~~gv----T~~~~l~Aa~~~al~ 278 (393)
.... . +.. ......+..............+.+. .+..++++..+...+. |-+.++.|-+...+.
T Consensus 196 ~p~~--~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~lk~~~~~~~~~~~~St~d~l~A~lWr~~~ 266 (432)
T PF02458_consen 196 PPSV--S-----FPP--SEFEPFPPEPAPPSSKCVSKTFVFSKLSIEKLKKLKSEALSSSSGKPVSTFDALTALLWRCIT 266 (432)
T ss_dssp THHH--G-----CTC--SCHTTC--TTS---SSEEEEEEEEEHHHHHHHHHHHHHHSTTTSTT-S-HHHHHHHHHHHHHH
T ss_pred Cccc--c-----ccc--cccccccccccccccccccceeeecccHHHHHHHHhhccccccCCCCCCeeEEEEEehhhhhc
Confidence 0000 0 000 0000010000001111122334455 5555555555543322 778888887777776
Q ss_pred hcCC---CCceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCC--CCcHHHHHHHHHHHHHh
Q 047915 279 NSDN---QRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKS--GEKLGDLAKKIYTAFVN 339 (393)
Q Consensus 279 ~~~g---~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~--~~~f~~la~~v~~~~~~ 339 (393)
+..+ .....+..++|+|+++.+++....+|+.+..........+ ..++..+|+.+++.+.+
T Consensus 267 rar~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~el~~~~l~~~a~~ir~ai~~ 332 (432)
T PF02458_consen 267 RARGLPSDETSRLSFAVDCRKRLNPPLPEGYFGNAVFFAFASATAGELLSEPLSDIARLIREAIAK 332 (432)
T ss_dssp HHHCHTTTTCEEEEEEEETHHHSSS---TTB-S--EEEEEEEEEHHHHHHSHHHHHHHHHHHHHCH
T ss_pred cccccccccccccccccccCCCcCCCcceeecCceEeecccccchhhhhhhhhhHHHHhhhhhhhc
Confidence 5442 2468999999999998876767788887765554444421 46789999999998876
No 17
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=98.83 E-value=1.8e-06 Score=84.85 Aligned_cols=266 Identities=14% Similarity=0.133 Sum_probs=149.2
Q ss_pred hHHHHHHHHHHHhhcccccceeccCCC-CCceEeeCCCCcceeeeecccCccccccccccccchhHHHHHHHHhhccccc
Q 047915 48 TSGLQDALNKLQSYHPILRSRLHTNPS-KNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAW 126 (393)
Q Consensus 48 ~~~L~~A~~~l~~rhp~LR~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~ 126 (393)
.+.|++|+.+++..++-|.-|+...++ .......+. -+.+-....+.+...+.... ....+...+ |.
T Consensus 54 ~~~Lk~sLs~~L~~fyplAGRl~~~~~g~~~i~c~~~---Gv~fveA~~~~~l~~~~~~~--~~~~~~~l~-------P~ 121 (447)
T PLN03157 54 IEILKDSLSRALVPFYPLAGRLRWIGGGRLELECNAM---GVLLIEAESEAKLDDFGDFS--PTPEFEYLI-------PS 121 (447)
T ss_pred HHHHHHHHHHHHhhccccCEEEEEcCCCcEEEEECCC---CeEEEEEEeCCcHHHhhccC--CCHHHHhhc-------CC
Confidence 579999999999999999999875443 333333222 22222221111110000000 011121111 21
Q ss_pred ccc-cCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCCccccccCCCChhHHh-hcCCCcc
Q 047915 127 CNL-KCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEA-LIPKGKA 204 (393)
Q Consensus 127 ~~~-~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 204 (393)
... ......|++.+.+.....+...|.+++||.++||.|+..|++.+.+.....+. . .+|-++. .+.....
T Consensus 122 ~~~~~~~~~~Pll~vQvT~F~cGG~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg~~~-~------~~P~~dR~~l~~~~~ 194 (447)
T PLN03157 122 VDYTKPIHELPLLLVQLTKFSCGGISLGLGISHAVADGQSALHFISEWARIARGEPL-G------TVPFLDRKVLRAGEP 194 (447)
T ss_pred CCcccccccCceEEEEEEEecCCCEEEEEEeeccccchHhHHHHHHHHHHHhcCCCC-C------CCCccCcccccCCCC
Confidence 111 00024588777765545567899999999999999999999999998843221 1 0111110 0000000
Q ss_pred ---hhHHHHhhhhhhhcccccccccccCCcC--CCCCCcccEEEEEeCHHHHHHHHHHHHhc-------CCCHHHHHHHH
Q 047915 205 ---KKALWARGRDMLTYSVNSLKSTNLKFID--AKSPRSSQVVRLQLNKDDTERILLTCKSR-------GIKLCGMLAAA 272 (393)
Q Consensus 205 ---~~~~w~~~~~~~~~~~~~~~~~~lp~~~--~~~~~~~~~~~~~l~~~~t~~l~~~ck~~-------gvT~~~~l~Aa 272 (393)
...+... .+. .++....... ...+.......+.++++..++|++.|... .+|-+.++.|-
T Consensus 195 p~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~~~~~~~~~~~St~dalsA~ 266 (447)
T PLN03157 195 PLSAPVFDHA-----EFS---HPPLLIGEQDNVEERKKKTTVAMLKLSKDQVEKLKDKANESRSSDNGRPYTRYETVAGH 266 (447)
T ss_pred CCcCCccChh-----hcc---cCcccccccccccccccCceEEEEEECHHHHHHHHHhCcccccccCCCCccHHHHHHHH
Confidence 0000000 000 0000000000 00011222456899999999999998653 26888888887
Q ss_pred HHHHHHhcCCC---CceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCC--CCcHHHHHHHHHHHHHhh
Q 047915 273 GLIAAHNSDNQ---RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKS--GEKLGDLAKKIYTAFVNS 340 (393)
Q Consensus 273 ~~~al~~~~g~---~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~--~~~f~~la~~v~~~~~~~ 340 (393)
+-..+.+..+. ....+..++|+|+++.|++....+|+.+..........+ +..+.++|..+++.+.+.
T Consensus 267 lWr~~~rAr~~~~~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~el~~~~l~~~a~~Ir~ai~~~ 339 (447)
T PLN03157 267 VWRSACKARGHEPEQPTALGICVDSRSRMQPPLPDGYFGNATLDVIAESTSGELVSKPLGYASSKIREAIEKV 339 (447)
T ss_pred HHHHHHHHccCCCCCceEEEEEecCCCCCCCCCCCCcccceeeeccchhhHHHHhhCCHHHHHHHHHHHHHHh
Confidence 77777665532 578899999999999887877888887764433322211 246899999999988665
No 18
>PF07428 Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR009992 This family represents a conserved region approximately 400 residues long within 15-O-acetyltransferase (Tri3), which seems to be restricted to ascomycete fungi. In Fusarium sporotrichioides, this is required for acetylation of the C-15 hydroxyl group of trichothecenes in the biosynthesis of T-2 toxin [].; PDB: 3FP0_A 3FOT_A.
Probab=98.82 E-value=5.4e-07 Score=81.13 Aligned_cols=162 Identities=12% Similarity=0.119 Sum_probs=83.2
Q ss_pred ceEEEEEeccccchHhhHHHHHHHHHHHHhcCCC----cccc------ccCCCChhHHhhcCCCcc-hhHHHHhhhh---
Q 047915 149 KWVVALRLHVAACDRTTAVSLLKELLLVLVSDDD----QEQE------GRGEVNLAIEALIPKGKA-KKALWARGRD--- 214 (393)
Q Consensus 149 ~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~----~~~~------~~~~~~~~~~~~~~~~~~-~~~~w~~~~~--- 214 (393)
...++|.+||+..||.|...|..+|+.++..--. .+.. +...+.+++-+.+..... ...++.....
T Consensus 168 ~V~~vFhsnHL~wDGis~r~FvGDlfR~l~~~i~~~~~~e~~~~~WG~Ei~NL~~pvld~lk~~v~tlg~EFd~~~~qy~ 247 (413)
T PF07428_consen 168 TVELVFHSNHLFWDGISCRKFVGDLFRLLGELIGASDKAELPKIQWGTEIKNLSPPVLDALKDDVSTLGSEFDDTCTQYT 247 (413)
T ss_dssp EEEEEEEE-GGG--HHHHHHHHHHHHHHHCCTTT---GGGS----TTTTGGGS---TGGGBSS-GGG--HHHHHHHHHHH
T ss_pred EEEEEEecccceeccccchhhhHHHHHHHHhhcCCCcccccccCcchhhhhhcChHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 5679999999999999999999999999853111 1100 011233344444433211 1111111110
Q ss_pred ---hhhcccccccccccCCcCCCCCCcccEEEEEeCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCC-----
Q 047915 215 ---MLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSR---GIKLCGMLAAAGLIAAHNSDNQ----- 283 (393)
Q Consensus 215 ---~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~t~~l~~~ck~~---gvT~~~~l~Aa~~~al~~~~g~----- 283 (393)
+.+|. .-.+|+... -..++.....++.++..+|.+.||.. +.|++++-+||+.+++-+....
T Consensus 248 ~aL~~~y~-----s~Gl~~~pg--~glpr~~i~~fs~~eS~Ai~k~vKt~~gP~~TisHL~qAAvllALL~~~~P~d~~D 320 (413)
T PF07428_consen 248 SALMANYK-----SWGLPFNPG--LGLPRCIIHSFSAEESIAIKKAVKTRLGPKYTISHLGQAAVLLALLRDLKPTDLPD 320 (413)
T ss_dssp HHHHHHHC-----S--CE---------EEEEEEE--HHHHHHHHHHHHHHT-TT--HHHHHHHHHHHHHHHH-------T
T ss_pred HHHhhccc-----ccCCCCCCC--CCCcceecccCChhhhHHHHHHHhcccCCCcCHHHHHHHHHHHHHHhccCCCCCCC
Confidence 01121 123333221 12445677889999999999999975 7899999999999999877522
Q ss_pred -CceEEEeeccccccCCCCCCCCceeeEeeeccce
Q 047915 284 -RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNT 317 (393)
Q Consensus 284 -~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~ 317 (393)
+-+..-+||++|+++.+.......+.+-.+-+++
T Consensus 321 ~~~~isp~~v~GRR~Lr~~~a~~~Y~~cqt~a~V~ 355 (413)
T PF07428_consen 321 SQAFISPMPVNGRRWLRPKIAKNYYAICQTAAVVR 355 (413)
T ss_dssp T--EEEEEEEE-GGGB-HHHHTS--S--EEEEEEE
T ss_pred cceEecccccCcchhcccchhhhhhhhhhccceEE
Confidence 2477889999999987643333334333444444
No 19
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.65 E-value=1.9e-07 Score=104.46 Aligned_cols=110 Identities=13% Similarity=0.008 Sum_probs=88.3
Q ss_pred HHHhhhhhhhcccccccccccCCcCCCCC---CcccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC
Q 047915 208 LWARGRDMLTYSVNSLKSTNLKFIDAKSP---RSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQR 284 (393)
Q Consensus 208 ~w~~~~~~~~~~~~~~~~~~lp~~~~~~~---~~~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~ 284 (393)
||++.+.. .++..+|.+.+.+. .....+.+.++++... +++|+|++++++|||++.+++++|++
T Consensus 1 ~W~~~L~~-------~~~~~lp~d~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~t~~~~l~aa~~~lL~r~sg~~ 67 (1389)
T TIGR03443 1 RWSERLDN-------PTLSVLPHDYLRPANNRLVEATYSLQLPSAEVT------AGGGSTPFIILLAAFAALVYRLTGDE 67 (1389)
T ss_pred ChhHhhCC-------CCcccCCCCCCCCCCCCcCCeEEEEeCCHHHHh------hhcCCCHHHHHHHHHHHHHHHHcCCC
Confidence 57776632 12334554432221 2334566788887766 99999999999999999999999999
Q ss_pred ceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 285 KYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 285 ~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
++.||+|+++|. +++|++++++++.+|.++++++++++.++++|++
T Consensus 68 dv~iG~~~~~R~---------------~~lplr~~~~~~~t~~~~l~~~~~~~~~~~~h~~ 113 (1389)
T TIGR03443 68 DIVLGTSSNKSG---------------RPFVLRLNITPELSFLQLYAKVSEEEKEGASDIG 113 (1389)
T ss_pred ceEEEeeeCCCC---------------ceEEEEecCCCCCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999984 4589999999999999999999999999999987
No 20
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=98.63 E-value=6.1e-06 Score=80.95 Aligned_cols=256 Identities=12% Similarity=0.046 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeeecccCccccccccccccchhHHHHHHHHhhcccccc
Q 047915 48 TSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWC 127 (393)
Q Consensus 48 ~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~ 127 (393)
.+.|+.|+.+++..++-|.-|+... ......+.. ..+..-..+.+ ..+++...+ ... +.+.+ |+.
T Consensus 58 ~~~Lk~sLs~~L~~fyplAGRl~~~---~~i~cn~~G-v~fveA~~~~~-l~d~l~~~~---~~~----~~~l~---p~~ 122 (444)
T PLN00140 58 SIQLKRSLSETLSTFYPFSGRVKDN---LIIDNYEEG-VPFFETRVKGS-LSDFLKHPQ---LEL----LNKFL---PCQ 122 (444)
T ss_pred HHHHHHHHHHHHhhhhccCccccCC---ceeEccCCC-ceEEEEEecCc-HHHhcCCCC---HHH----HHhhC---CCC
Confidence 4889999999999999999998753 111111211 11111111100 001111100 111 11111 221
Q ss_pred ccc---CCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCCccccccCCCChhHHh---hcCC
Q 047915 128 NLK---CTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEA---LIPK 201 (393)
Q Consensus 128 ~~~---~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~---~~~~ 201 (393)
... .+...|++.+-+-+...+...|-+++||.++||.|+..|++.+.+......... ..|.++. ..+.
T Consensus 123 ~~~~~~~~~~~Pll~vQvT~F~cGG~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg~~~~~------~~P~~dr~~~~~p~ 196 (444)
T PLN00140 123 PFSYESDPEAIPQVAIQVNTFDCGGIALGLCFSHKIIDAATASAFLDSWAANTRGHYSEV------INPDLFEASSFFPP 196 (444)
T ss_pred cccccCCccCCceEEEEEEEeccCcEEEEeeeceEcccHHHHHHHHHHHHHHhcCCCCCC------CCcccccccccCCC
Confidence 100 002358877777665556789999999999999999999999999885321100 1111110 0000
Q ss_pred Ccc-hhHHHHhhhhhhhcccccccccccCCcCCCCCCcccEEEEEeCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Q 047915 202 GKA-KKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSR---GIKLCGMLAAAGLIAA 277 (393)
Q Consensus 202 ~~~-~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~t~~l~~~ck~~---gvT~~~~l~Aa~~~al 277 (393)
... ...+. ...+ .....+......++.++++..++|++.|... .+|-+.++.|-+-..+
T Consensus 197 ~~~~~~~~~----------------~~~~-~~~~~~~~~v~~~f~fs~~~I~~LK~~~~~~~~~~~S~~e~vsA~iWr~~ 259 (444)
T PLN00140 197 LNSFPVQFL----------------LLME-ENWFFKENYITKRFVFDAKAIATLRAKAKSKRVPNPSRIETLSCFIWKCC 259 (444)
T ss_pred CCccccccc----------------cccc-ccccccCceEEEEEEECHHHHHHHHHhcccccCCCCchhHHHHHHHHHHH
Confidence 000 00000 0000 0000111122456889999999999999753 4677788877666665
Q ss_pred HhcC----C-CCceEEEeeccccccCCCCCCCCceeeEeeeccceeeCC-CCCcHHHHHHHHHHHHHhhh
Q 047915 278 HNSD----N-QRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIK-SGEKLGDLAKKIYTAFVNSK 341 (393)
Q Consensus 278 ~~~~----g-~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~-~~~~f~~la~~v~~~~~~~~ 341 (393)
.+.. + .....+..++|+|++..|++..+.+|+.+.......... ....++.+|..|++.+.+..
T Consensus 260 ~rA~~~~~~~~~~~~~~~~vn~R~Rl~PpLP~~y~GN~i~~~~~~~~~~~~~~~l~~~a~~Ir~~i~~~~ 329 (444)
T PLN00140 260 TAASRSISAAPRPSISVHAVNIRQRTKPPMSRYSIGNLFWWALAAADPADTKIELNELVSLTRESIANYN 329 (444)
T ss_pred HHHhhhccCCCCceEEEEEEeccccCCCCCCcccccchhhhheecccccccccchHHHHHHHHHHHHHHH
Confidence 5442 2 246788889999999988887778888664332222221 13679999999999887753
No 21
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.55 E-value=3.2e-07 Score=94.49 Aligned_cols=100 Identities=12% Similarity=0.127 Sum_probs=90.3
Q ss_pred eCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCCCCc
Q 047915 246 LNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEK 325 (393)
Q Consensus 246 l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~~~~ 325 (393)
++++...++.+.++++|+|++++++|+|...+++++|++++.+++|+.+|+...+.. ...+|.|+|+++++.++.+..+
T Consensus 1 ~~~~~~~~l~~~~~~~~~t~~~~l~a~~~~~l~r~~~~~~~~~g~~~~~r~~~~~~~-~~~ig~f~n~~~lr~~~~~~~~ 79 (642)
T COG1020 1 LDPELSAALRALAAEHGLTLFMVLLAAFAALLSRWSGQEDIVLGLPVAGRPLALPDV-EQLIGLFANTLPLRLDISGRVT 79 (642)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCEEEeeeecCCCccccch-HhhccchheeeeeeeccCCCCC
Confidence 356777889999999999999999999999999999999999999999997544433 5799999999999999999899
Q ss_pred HHHHHHHHHHHHHhhhccCCC
Q 047915 326 LGDLAKKIYTAFVNSKHCNRH 346 (393)
Q Consensus 326 f~~la~~v~~~~~~~~~~~~~ 346 (393)
|.++++++++++..+.+|++.
T Consensus 80 ~~~~~~~~~~~~~~~~~h~~~ 100 (642)
T COG1020 80 FAELLARLRELALGALEHQDL 100 (642)
T ss_pred HHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999873
No 22
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=93.87 E-value=0.97 Score=38.44 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=24.3
Q ss_pred EEEEeccccchHhhHHHHHHHHHHHH
Q 047915 152 VALRLHVAACDRTTAVSLLKELLLVL 177 (393)
Q Consensus 152 l~l~~hH~i~DG~S~~~~~~~l~~~y 177 (393)
|.+.+||+.+||+-+..|++.|-+.+
T Consensus 186 lavq~hHA~vDG~Hi~~l~~~lQ~~~ 211 (219)
T COG4845 186 LAVQAHHANVDGFHIGQLFDQLQTLF 211 (219)
T ss_pred EEEEecccccchhhHHHHHHHHHHHh
Confidence 66899999999999999999998888
No 23
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=93.55 E-value=0.35 Score=29.48 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=32.0
Q ss_pred EEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047915 242 VRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAA 277 (393)
Q Consensus 242 ~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al 277 (393)
+++.++.+..++|.+.|++.|.|.+.++.-|+...+
T Consensus 2 iti~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l 37 (39)
T PF01402_consen 2 ITIRLPDELYERLDELAKELGRSRSELIREAIREYL 37 (39)
T ss_dssp EEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred eEEEeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 568899999999999999999999999988876554
No 24
>PHA01623 hypothetical protein
Probab=89.55 E-value=2.2 Score=28.46 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=35.1
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~ 279 (393)
....++++.++..+|..+|+.+|++.+.++.-|+-..+..
T Consensus 14 ~r~sVrldeel~~~Ld~y~~~~g~~rSe~IreAI~~yL~~ 53 (56)
T PHA01623 14 AVFGIYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_pred eeEEEEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999888766654
No 25
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=89.08 E-value=2.1 Score=27.79 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=34.1
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~ 279 (393)
...++++.+...+|...++.+|-|+|+-+..++--++.+
T Consensus 6 ~f~lRlP~~l~~~lk~~A~~~gRS~NsEIv~~L~~~l~~ 44 (50)
T PF03869_consen 6 QFNLRLPEELKEKLKERAEENGRSMNSEIVQRLEEALKK 44 (50)
T ss_dssp EEEEECEHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred ceeeECCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhc
Confidence 456889999999999999999999999999998887764
No 26
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=87.24 E-value=0.53 Score=40.93 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.4
Q ss_pred EEEEeccccchHhhHHHHHHHH
Q 047915 152 VALRLHVAACDRTTAVSLLKEL 173 (393)
Q Consensus 152 l~l~~hH~i~DG~S~~~~~~~l 173 (393)
|.+.+||+++||+-+..|+++|
T Consensus 184 vsiqvhHa~~DG~Hv~~F~~~l 205 (206)
T PF00302_consen 184 VSIQVHHALVDGYHVGQFFEEL 205 (206)
T ss_dssp EEEEEETTT--HHHHHHHHHHH
T ss_pred EEEEEecccccHHHHHHHHHHh
Confidence 6789999999999999999986
No 27
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=86.75 E-value=1.3 Score=28.89 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=28.8
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAA 272 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa 272 (393)
...+++++++-+++...+++.|+|+|.++.-|
T Consensus 19 ~~~lRi~~~Lh~~l~~~A~~~gvSlN~~I~~a 50 (51)
T PF05534_consen 19 KFNLRIPPELHRALAEAAAAEGVSLNQWIEEA 50 (51)
T ss_pred ceeeeCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45688999999999999999999999998754
No 28
>PHA01513 mnt Mnt
Probab=86.22 E-value=2.5 Score=30.44 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=34.2
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAH 278 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~ 278 (393)
...++++.++-.+|...++.+|.|+|+.+..++..++.
T Consensus 7 qf~LRLP~eLk~rL~~aA~~nGRSmNaeIv~~Le~al~ 44 (82)
T PHA01513 7 QFNLRLPYELKEKLKQRAKANGRSLNAELVQIVQDALS 44 (82)
T ss_pred ceeeeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999998877775
No 29
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=85.50 E-value=0.87 Score=39.96 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.5
Q ss_pred EEEEeccccchHhhHHHHHHHHHHHH
Q 047915 152 VALRLHVAACDRTTAVSLLKELLLVL 177 (393)
Q Consensus 152 l~l~~hH~i~DG~S~~~~~~~l~~~y 177 (393)
|-+.+||+++||+-+..|+++|-+.+
T Consensus 187 vSvqvHHa~~DG~Hv~~F~~~lQ~~~ 212 (219)
T PRK13757 187 LAIQVHHAVCDGFHVGRMLNELQQYC 212 (219)
T ss_pred EEEEEehhccchHHHHHHHHHHHHHH
Confidence 66899999999999999999997765
No 30
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=84.95 E-value=7 Score=39.60 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=25.4
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHH
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVL 177 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y 177 (393)
.|.+++||-++||.-+..|+++|-+++
T Consensus 513 ~lslt~DHRviDG~~aa~Fl~~l~~~l 539 (547)
T PRK11855 513 PLSLSYDHRVIDGATAARFTNYLKQLL 539 (547)
T ss_pred EEeEEccchhcCcHHHHHHHHHHHHHH
Confidence 478999999999999999999999988
No 31
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=83.38 E-value=6.6 Score=24.68 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=35.7
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~ 280 (393)
...+.++.+...+|...|++.|+..+.++--|+-..+.+|
T Consensus 4 r~t~~l~~el~~~L~~ls~~t~i~~S~Ll~eAle~~l~ky 43 (44)
T PF12651_consen 4 RFTFSLDKELYEKLKELSEETGIPKSKLLREALEDYLEKY 43 (44)
T ss_pred EEEEecCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 3568899999999999999999999999999988887765
No 32
>PRK11675 LexA regulated protein; Provisional
Probab=82.42 E-value=5.5 Score=29.31 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=33.1
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAA 277 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al 277 (393)
..+.+.++.+...+|.++|+++|+|-..++.-++...+
T Consensus 51 KRveVKldedl~ekL~eyAe~~nitRSElIr~~I~k~L 88 (90)
T PRK11675 51 KRVELKLNADLVDALNELAEARNISRSELIEEILMKQL 88 (90)
T ss_pred eeEEEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 35778999999999999999999999999987775544
No 33
>PHA01748 hypothetical protein
Probab=81.78 E-value=7.4 Score=26.37 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=34.9
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~ 280 (393)
.+.++++.+....|...|+++|++-+.++..|+-..+...
T Consensus 4 ~iSvrLp~el~~eld~~a~~~g~~RSE~Ir~Ai~~~~~~~ 43 (60)
T PHA01748 4 VITFKIEEDLLELLDRYAIKHGLNRSEAIRKAIEKMVKDE 43 (60)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999887766543
No 34
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=78.52 E-value=27 Score=36.15 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=25.8
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
.|.+++||-++||.-+..|+++|.+++.
T Consensus 599 ~lslt~DHRviDGa~aa~Fl~~lk~~LE 626 (633)
T PRK11854 599 PLSLSYDHRVIDGADGARFITIINDRLS 626 (633)
T ss_pred EEeEEccchhcchHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999983
No 35
>PF09274 ParG: ParG; InterPro: IPR015354 This entry represents plasmid partition proteins; it adopts a ribbon-helix-helix fold, with a core of four alpha-helices. The proteins are an essential component of the DNA partition complex of the multi drug resistance plasmid TP228 []. ; PDB: 1P94_B.
Probab=78.32 E-value=9 Score=27.21 Aligned_cols=40 Identities=10% Similarity=0.259 Sum_probs=31.1
Q ss_pred CCCcccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 047915 235 SPRSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGL 274 (393)
Q Consensus 235 ~~~~~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~ 274 (393)
++.....+++.|+.+.-.+|...|-.+|+|+..++.-++-
T Consensus 30 ~s~k~Krvtv~i~EelH~r~K~~ca~~G~sisdvv~eLid 69 (76)
T PF09274_consen 30 PSEKTKRVTVNIDEELHRRFKAACAKQGTSISDVVRELID 69 (76)
T ss_dssp TTTTEEEE-EEEEHHHHHHHHHHHHHHT--HHHHHHHHHH
T ss_pred CccceEEEEEecCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3455667889999999999999999999999999876653
No 36
>PHA00617 ribbon-helix-helix domain containing protein
Probab=73.92 E-value=17 Score=26.19 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=35.0
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~ 279 (393)
..+.++|++++.++|.+.++..|.+-+.++..|+-..+.+
T Consensus 40 ~~iSVrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee 79 (80)
T PHA00617 40 DVISFKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEE 79 (80)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999888766643
No 37
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=66.22 E-value=27 Score=25.33 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=29.3
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAH 278 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~ 278 (393)
.+.++++.+.-.+..+.|++.|.|++.++-..+-....
T Consensus 3 ~i~~Rid~~lK~~a~~il~~~Glt~s~ai~~fl~qiv~ 40 (83)
T PF04221_consen 3 TINVRIDEELKEEAEAILEELGLTLSDAINMFLKQIVR 40 (83)
T ss_dssp EEEEEE-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred eEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998876644443
No 38
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=61.71 E-value=33 Score=24.95 Aligned_cols=36 Identities=3% Similarity=0.056 Sum_probs=30.8
Q ss_pred EEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047915 242 VRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAA 277 (393)
Q Consensus 242 ~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al 277 (393)
+.++++.++-.+..+.|++.|+|++.++-..+....
T Consensus 5 i~~Rvd~~lK~~a~~i~~~lGl~~s~ai~~fl~qvv 40 (83)
T TIGR02384 5 ISIRIDEELKKEAYAVFEELGLTPSTAIRMFLKQVI 40 (83)
T ss_pred eEEeeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999998886654333
No 39
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=60.94 E-value=41 Score=25.65 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=32.4
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAA 277 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al 277 (393)
-...++++++-+++...+.++|+|+|.++.-++..+.
T Consensus 72 kf~~Ri~p~lH~~a~~aAa~qgiSLN~~v~~~L~~~v 108 (111)
T COG4226 72 KFNLRIDPELHEAAALAAAAQGISLNTWVEEALNEAV 108 (111)
T ss_pred eeeEecCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4568999999999999999999999999988876554
No 40
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=59.99 E-value=40 Score=24.35 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=31.0
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAA 277 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al 277 (393)
.+.++++.+.-....+.|++.|+|++.++-..+-...
T Consensus 3 ~i~vRiD~~lK~~A~~vl~~lGls~S~Ai~~fl~qi~ 39 (80)
T PRK11235 3 TINVRVDDELKARAYAVLEKLGVTPSEALRLLLQYVA 39 (80)
T ss_pred eEEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999886654443
No 41
>PF08681 DUF1778: Protein of unknown function (DUF1778); InterPro: IPR014795 This entry is represented by Vibrio phage ICP1, Orf50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA. ; PDB: 1Y9B_A.
Probab=58.75 E-value=45 Score=23.98 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=28.8
Q ss_pred EEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047915 242 VRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 242 ~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~ 279 (393)
..++++++.-..|.+++...|+|++.++..+..-...+
T Consensus 2 i~iR~~~e~k~li~~AA~~~G~sls~Fi~~aa~~~A~~ 39 (80)
T PF08681_consen 2 IEIRVTPEEKELIERAAALSGVSLSDFILSAALEAAEE 39 (80)
T ss_dssp EEEE--HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred eeEecCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999988776555444
No 42
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=56.92 E-value=1e+02 Score=27.36 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=49.6
Q ss_pred EEEeCHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHhcC-------CC------CceEEEeeccccccCCCCCC
Q 047915 243 RLQLNKDDTERILLTCKS------RGIKLCGMLAAAGLIAAHNSD-------NQ------RKYAVATLTDCRSILEPPLS 303 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~------~gvT~~~~l~Aa~~~al~~~~-------g~------~~~~i~~pv~~R~~~~~~~~ 303 (393)
...++.+...++++.-|+ .++|++.++.-|+..++.++- ++ +.+.+|+.++..
T Consensus 33 ~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~~~~~~~i~~~~~vnIgvAV~~~-------- 104 (231)
T PF00198_consen 33 SREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNASWDGDGEIVLYERVNIGVAVDTP-------- 104 (231)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEEEETTSEEEEESS--EEEEEEET--------
T ss_pred EEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccccccccceeeeeeEEEEEEEEcC--------
Confidence 345655555555544332 289999999999999998764 11 123333333211
Q ss_pred CCceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 304 NHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 304 ~~~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+ |.+ +| .++-....++.|+++++++...++.+.+
T Consensus 105 ~---GL~---vP-VIr~a~~~sl~eIa~e~~~l~~~ar~g~ 138 (231)
T PF00198_consen 105 D---GLV---VP-VIRDADKKSLAEIAKELRDLAERAREGK 138 (231)
T ss_dssp T---EEE---EE-EETTGGGS-HHHHHHHHHHHHHHHHTT-
T ss_pred C---CEE---EE-EEeCCccccHHHHHHHHhhhhccchhhh
Confidence 0 111 12 2222345899999999999988887765
No 43
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=55.25 E-value=47 Score=24.24 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=29.5
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAH 278 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~ 278 (393)
..+...++++.-..|..+|+..|+|-..+|--++-..+.
T Consensus 42 k~i~v~I~~~~K~~L~~lc~~~GlTQae~IE~LI~~~~~ 80 (84)
T PF10723_consen 42 KRINVFIPNELKERLEELCKEQGLTQAEMIERLIKSELQ 80 (84)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHS---HHHHHHHHHHHHHH
T ss_pred CeeEEEECHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 356778999999999999999999999998776655443
No 44
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=53.54 E-value=31 Score=23.95 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=25.4
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHH
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAA 271 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~A 271 (393)
....+.|.+.....|.+.|++.|.|++.++.-
T Consensus 12 hrTSi~LE~~FW~~L~eiA~~~g~s~~~li~~ 43 (67)
T PF13467_consen 12 HRTSIRLEPAFWDALEEIAAREGLSLNALIAE 43 (67)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred EEeeeeehHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 34568899999999999999999999877654
No 45
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=53.08 E-value=12 Score=36.31 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=25.4
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHH
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVL 177 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y 177 (393)
.|.+++||-++||.-+..|+++|-+.+
T Consensus 376 ~lslt~DHRviDG~~aa~Fl~~l~~~l 402 (411)
T PRK11856 376 PLSLSFDHRVIDGADAARFLKALKELL 402 (411)
T ss_pred EEeEEeehhhcCcHHHHHHHHHHHHHH
Confidence 488999999999999999999999988
No 46
>PRK13877 conjugal transfer relaxosome component TraJ; Provisional
Probab=52.16 E-value=38 Score=26.35 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=30.8
Q ss_pred ccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 047915 239 SQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAG 273 (393)
Q Consensus 239 ~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~ 273 (393)
+..+.+.+++++-..|.+.|++.|+|+..++-.+.
T Consensus 10 ~~~I~vrvt~eE~~~I~~kA~~AGlS~SeYLR~~a 44 (114)
T PRK13877 10 GRHLRVPVLPDEKAEIEANAAAAGLSVARYLRDVG 44 (114)
T ss_pred CceeEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34567899999999999999999999999988764
No 47
>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family. These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....
Probab=50.91 E-value=1.1e+02 Score=31.37 Aligned_cols=43 Identities=9% Similarity=-0.113 Sum_probs=31.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCC
Q 047915 256 LTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILE 299 (393)
Q Consensus 256 ~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~ 299 (393)
.++|+.|+++-++++.|+++|..++.|+- ....=++++|.+..
T Consensus 395 ~~iK~~~~spDa~iQ~alQLA~~r~~g~~-~~tyEs~stR~F~~ 437 (591)
T PF00755_consen 395 DFIKKFKVSPDAFIQMALQLAYYRLHGKF-PPTYESASTRHFRH 437 (591)
T ss_dssp HHHHHTTS-HHHHHHHHHHHHHHHHHSS----EEEEEE-TTSTT
T ss_pred HhHhcCCCCccHHHHHHHHHHHHHHcCCc-chhhhhhhHHHhHh
Confidence 67888999999999999999999988873 23455677887643
No 48
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=48.91 E-value=98 Score=30.07 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=48.9
Q ss_pred HHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcC-------CC-----CceEEEeeccccccCCCCCCCCceeeEeee
Q 047915 251 TERILLTCKSR-----GIKLCGMLAAAGLIAAHNSD-------NQ-----RKYAVATLTDCRSILEPPLSNHRFGFYHSA 313 (393)
Q Consensus 251 t~~l~~~ck~~-----gvT~~~~l~Aa~~~al~~~~-------g~-----~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~ 313 (393)
..+|.+++|++ ++|++.+++-|+..++.++- +. +.+.+++.++ +. + |.++
T Consensus 222 vt~l~~~~k~~~~~~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~-~~-------~---gl~~-- 288 (411)
T PRK11856 222 VTALLALRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVA-TD-------G---GLIV-- 288 (411)
T ss_pred hHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEE-CC-------C---CeEe--
Confidence 34566777776 89999999999999997764 11 2233333333 10 1 1111
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHHHhhhcc
Q 047915 314 IMNTHLIKSGEKLGDLAKKIYTAFVNSKHC 343 (393)
Q Consensus 314 ~~~~~~v~~~~~f~~la~~v~~~~~~~~~~ 343 (393)
|+ +.-....+|.++++.+++...++.++
T Consensus 289 -pv-i~~~~~~sl~ei~~~~~~~~~~ar~~ 316 (411)
T PRK11856 289 -PV-IRDADKKSLFELAREIKDLAEKAREG 316 (411)
T ss_pred -Cc-CCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 22 22223579999999999988877654
No 49
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=48.05 E-value=14 Score=22.37 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=22.2
Q ss_pred CCCChHHHHHHHHHHHhhcccccceec
Q 047915 44 KVPETSGLQDALNKLQSYHPILRSRLH 70 (393)
Q Consensus 44 g~ld~~~L~~A~~~l~~rhp~LR~~~~ 70 (393)
..+|.+.|+.-+..++++||-+...+.
T Consensus 8 E~Ld~~qL~~lL~~l~~~HPei~~~i~ 34 (38)
T PF14483_consen 8 ETLDKDQLQSLLQSLCERHPEIQQEIR 34 (38)
T ss_dssp TTS-HHHHHHHHHHHHHHSTHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHhChhHHHHHH
Confidence 358999999999999999998876554
No 50
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=47.42 E-value=52 Score=26.76 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=32.6
Q ss_pred cccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 047915 238 SSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAG 273 (393)
Q Consensus 238 ~~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~ 273 (393)
...++.+.+++++...|.+.|+..|+|+..++-.|.
T Consensus 23 ~~kvVsvRLTe~Ey~~L~~rA~~aGlS~SEfIRqAi 58 (147)
T PRK13858 23 GFKVVSTRLRSAEYESFSAQARLLGLSDSMAIRVAV 58 (147)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 346788999999999999999999999999998876
No 51
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=47.00 E-value=2e+02 Score=28.51 Aligned_cols=93 Identities=9% Similarity=0.040 Sum_probs=52.8
Q ss_pred EEeCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeee---
Q 047915 244 LQLNKDDTERILLTCKS-------RGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSA--- 313 (393)
Q Consensus 244 ~~l~~~~t~~l~~~ck~-------~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~--- 313 (393)
..++.....++++..+. .++|++.++.-|+..+|.++---+- -++....... ....+|.-+.+
T Consensus 264 ~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa-----~~~~~~i~~~--~~vnIGvAV~t~~G 336 (463)
T PLN02226 264 NEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNA-----VIDGDDIIYR--DYVDISIAVGTSKG 336 (463)
T ss_pred EEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhhe-----EEcCCEEEEe--CcccEEEEEECCCC
Confidence 45555555555555442 2589999999999999987641000 0011100000 11233433321
Q ss_pred --ccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 314 --IMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 314 --~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+|+.-. ....++.++++++++...++.+++
T Consensus 337 LvVPVIr~-ad~~sl~eIa~ei~~L~~kAR~gk 368 (463)
T PLN02226 337 LVVPVIRG-ADKMNFAEIEKTINGLAKKANEGT 368 (463)
T ss_pred EEeccCCC-cccCCHHHHHHHHHHHHHHHHcCC
Confidence 233222 345899999999999998887665
No 52
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=44.78 E-value=44 Score=20.39 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHH
Q 047915 254 ILLTCKSRGIKLCGMLAAAGL 274 (393)
Q Consensus 254 l~~~ck~~gvT~~~~l~Aa~~ 274 (393)
|.+.||.+|+.+..+|.-.+.
T Consensus 2 lieTcK~ngv~P~~yL~~vL~ 22 (39)
T PF13817_consen 2 LIETCKLNGVNPYAYLTDVLE 22 (39)
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 678999999999999987663
No 53
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=44.54 E-value=2.3e+02 Score=27.53 Aligned_cols=93 Identities=10% Similarity=0.041 Sum_probs=53.0
Q ss_pred EEeCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeee---
Q 047915 244 LQLNKDDTERILLTCKS-------RGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSA--- 313 (393)
Q Consensus 244 ~~l~~~~t~~l~~~ck~-------~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~--- 313 (393)
..++.+...++++..++ .++|++.++.-|+..+|.++---+ .-++....... ....+|.-+.+
T Consensus 208 ~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~N-----a~~~~~~i~~~--~~~nIgiAv~~~~G 280 (407)
T PRK05704 208 NEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVN-----ASIDGDDIVYH--NYYDIGIAVGTPRG 280 (407)
T ss_pred EEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhh-----cEEcCCeEEEc--CCCCeEEEEECCCc
Confidence 45666666655555442 258999999999999998764100 00011110000 12234433331
Q ss_pred --ccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 314 --IMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 314 --~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+|+.-. ....++.++++++++...++.+++
T Consensus 281 LivPVI~~-a~~~sl~eIa~~~~~l~~~ar~g~ 312 (407)
T PRK05704 281 LVVPVLRD-ADQLSFAEIEKKIAELAKKARDGK 312 (407)
T ss_pred eEeCcCCC-cccCCHHHHHHHHHHHHHHHHcCC
Confidence 233222 345799999999999988876665
No 54
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=43.42 E-value=2.2e+02 Score=27.77 Aligned_cols=87 Identities=7% Similarity=0.064 Sum_probs=53.2
Q ss_pred EEEeCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcC-------CC-----CceEEEeeccccccCCCCCC
Q 047915 243 RLQLNKDDTERILLTCKS-------RGIKLCGMLAAAGLIAAHNSD-------NQ-----RKYAVATLTDCRSILEPPLS 303 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~-------~gvT~~~~l~Aa~~~al~~~~-------g~-----~~~~i~~pv~~R~~~~~~~~ 303 (393)
...++.....++++..++ .++|++.++.=|+..+|.++- +. ..+.||..++..+
T Consensus 218 ~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~~~------- 290 (418)
T PTZ00144 218 FNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPT------- 290 (418)
T ss_pred EEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEEEECCC-------
Confidence 345555555555555442 258999999999999998764 11 1233333333211
Q ss_pred CCceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 304 NHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 304 ~~~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
|.+ +|+.-. ....++.++++++++...++.+++
T Consensus 291 ----GL~---vPVI~~-ad~~sl~eIa~ei~~L~~~ar~g~ 323 (418)
T PTZ00144 291 ----GLV---VPVIRN-CENKSFAEIEKELADLAEKARNNK 323 (418)
T ss_pred ----CEE---EccCCC-cccCCHHHHHHHHHHHHHHHHcCC
Confidence 111 233222 345799999999999998887765
No 55
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=42.21 E-value=28 Score=24.65 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=30.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCC
Q 047915 36 AVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNP 73 (393)
Q Consensus 36 ~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~ 73 (393)
+.+++.-...-|.+.|..|+.++.+.-|.|+..+..+.
T Consensus 6 ~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et 43 (75)
T PF14492_consen 6 LSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEET 43 (75)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTT
T ss_pred EEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 35566777777899999999999999999998776554
No 56
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=41.73 E-value=2.9e+02 Score=27.15 Aligned_cols=87 Identities=8% Similarity=0.121 Sum_probs=54.3
Q ss_pred EEEeCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHhcC-------CC-----CceEEEeeccccccCCCCCCCC
Q 047915 243 RLQLNKDDTERILLTCKS-----RGIKLCGMLAAAGLIAAHNSD-------NQ-----RKYAVATLTDCRSILEPPLSNH 305 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~-----~gvT~~~~l~Aa~~~al~~~~-------g~-----~~~~i~~pv~~R~~~~~~~~~~ 305 (393)
...++.+...++++..+. .++|++.+|.=|+..+|.++- +. +.+.||+.++...
T Consensus 236 ~~evd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~--------- 306 (435)
T TIGR01349 236 SIECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPD--------- 306 (435)
T ss_pred EEEEEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCC---------
Confidence 345555566666555553 369999999999999998764 11 2334444443211
Q ss_pred ceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 306 RFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 306 ~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
|.+ +|+.-.+ ...++.++++++++....+.+++
T Consensus 307 --GL~---vPvi~~a-~~~sl~eia~~i~~l~~~ar~~~ 339 (435)
T TIGR01349 307 --GLI---TPIVRNA-DAKGLSTISNEIKDLAKRARNNK 339 (435)
T ss_pred --CeE---ECCCCCc-ccCCHHHHHHHHHHHHHHHhcCC
Confidence 211 2332233 45799999999999998876654
No 57
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=40.30 E-value=3.1e+02 Score=25.50 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHHhcC-------CC-------CceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCCCCcHH
Q 047915 262 GIKLCGMLAAAGLIAAHNSD-------NQ-------RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLG 327 (393)
Q Consensus 262 gvT~~~~l~Aa~~~al~~~~-------g~-------~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~~~~f~ 327 (393)
++|++.++.-|+..+|.++- ++ +++.|+..++..+ |.+ +|+.-. ....++.
T Consensus 131 kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~-----------GL~---vPVI~~-a~~~sl~ 195 (306)
T PRK11857 131 KLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTEA-----------GLM---VPVIKN-AQKLSIV 195 (306)
T ss_pred CCCHHHHHHHHHHHHHHhCcHhhEEEeCCCCEEEEcCCccEEEEEECCC-----------CEE---eCCcCC-cCcCCHH
Confidence 58999999999999998764 11 1233333333210 211 233222 3458999
Q ss_pred HHHHHHHHHHHhhhccC
Q 047915 328 DLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 328 ~la~~v~~~~~~~~~~~ 344 (393)
++++++++....+.+++
T Consensus 196 eIa~~i~~l~~~Ar~~k 212 (306)
T PRK11857 196 EIAKEISRLAKAARERK 212 (306)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999998887665
No 58
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=38.82 E-value=2.6e+02 Score=24.24 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--------C-C----CceEEEeeccccccCCCCCCCCceeeEeeeccce
Q 047915 251 TERILLTCKSRGIKLCGMLAAAGLIAAHNSD--------N-Q----RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNT 317 (393)
Q Consensus 251 t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~--------g-~----~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~ 317 (393)
...+.+.||++|.+.+.+++=++..++-+.- + + +.+....++-.+. +.+++. +.
T Consensus 36 vT~l~~~~K~~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~~-------~~tFs~------~~ 102 (206)
T PF00302_consen 36 VTNLYKYAKEKGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHKD-------DETFSF------CW 102 (206)
T ss_dssp -HHHHHHHHHTT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEETT-------TTEEEE------EE
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeCC-------CCeEEE------EE
Confidence 3458899999999999999888888875443 1 2 2233332221111 123322 11
Q ss_pred eeCCCCCcHHHHHHHHHHHHHhhhccCCC
Q 047915 318 HLIKSGEKLGDLAKKIYTAFVNSKHCNRH 346 (393)
Q Consensus 318 ~~v~~~~~f~~la~~v~~~~~~~~~~~~~ 346 (393)
+ .=.++|.+..+...+.+++..+....
T Consensus 103 ~--~y~~df~~F~~~~~~~~~~~~~~~~~ 129 (206)
T PF00302_consen 103 T--EYDEDFEEFYANYEADIERYKESKGL 129 (206)
T ss_dssp E-----SSHHHHHHHHHHHHHHHTTS-SS
T ss_pred e--cCCCCHHHHHHHHHHHHHHHhccccc
Confidence 1 12458889989998888776665443
No 59
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=38.31 E-value=52 Score=24.06 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=25.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHHHhhccccccee
Q 047915 36 AVLAILTSKVPETSGLQDALNKLQSYHPILRSRL 69 (393)
Q Consensus 36 ~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~ 69 (393)
..+++..++++|.++|+..++. ....+||+.=
T Consensus 2 ~s~~~~~~~p~~~~~l~~~l~~--~~~~vlR~KG 33 (94)
T PF07683_consen 2 SSVTFEFDRPFDPERLEAWLQE--LPGDVLRAKG 33 (94)
T ss_dssp EEEEEEESS-B-HHHHHHHHHH--TTTTEEEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHh--CCCCEEEEEE
Confidence 3678899999999999999999 7777899764
No 60
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=38.01 E-value=2.9e+02 Score=28.01 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=52.2
Q ss_pred EEeCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeee---
Q 047915 244 LQLNKDDTERILLTCKS-------RGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSA--- 313 (393)
Q Consensus 244 ~~l~~~~t~~l~~~ck~-------~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~--- 313 (393)
..++-+...++++..+. .++|++.+|.=|+..+|.++-.-+- .++....... ....+|.-+.+
T Consensus 339 ~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa-----~~~~~~i~~~--~~vnIgvAV~t~~G 411 (539)
T PLN02744 339 VDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNS-----SWTDDYIRQY--HNVNINVAVQTENG 411 (539)
T ss_pred EEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhhe-----eeccCcEEEe--CCcceEEEEECCCC
Confidence 34444445555555442 2689999999999999987641000 0000000000 01223333321
Q ss_pred --ccceeeCCCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 314 --IMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 314 --~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
+|+.-.+ ...++.++++++++...++.+++-
T Consensus 412 L~vPVIr~a-d~~sl~eIa~ei~~L~~kAr~~kL 444 (539)
T PLN02744 412 LYVPVVKDA-DKKGLSTIAEEVKQLAQKARENSL 444 (539)
T ss_pred eEECcCCCc-ccCCHHHHHHHHHHHHHHHHcCCC
Confidence 2332233 458999999999999988877653
No 61
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=37.47 E-value=3.4e+02 Score=26.34 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=52.6
Q ss_pred EEEeCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeee--
Q 047915 243 RLQLNKDDTERILLTCKS-------RGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSA-- 313 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~-------~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~-- 313 (393)
...++.....++++..+. .++|++.+|.-|+..++.++-.-+ . -++...... .....+|.-+.+
T Consensus 203 ~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~N---a--~~~~~~i~~--~~~vnIgvAv~~~~ 275 (403)
T TIGR01347 203 FNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVN---A--EIDGDDIVY--KDYYDISVAVSTDR 275 (403)
T ss_pred EEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhh---e--EEcCCEEEE--cCCCCeEEEEECCC
Confidence 345665555555554432 258999999999999998764100 0 001100000 012233433321
Q ss_pred ---ccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 314 ---IMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 314 ---~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+|+.-. ....++.++++++++...++.+++
T Consensus 276 GL~vPVIr~-ad~~sl~eIa~~~~~l~~~ar~gk 308 (403)
T TIGR01347 276 GLVVPVVRN-ADRMSFADIEKEIADLGKKARDGK 308 (403)
T ss_pred CeEECcCCC-cccCCHHHHHHHHHHHHHHHHcCC
Confidence 233222 245799999999999988887654
No 62
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=36.88 E-value=3.4e+02 Score=25.71 Aligned_cols=95 Identities=6% Similarity=0.010 Sum_probs=52.4
Q ss_pred EEeCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeee---
Q 047915 244 LQLNKDDTERILLTCKS-------RGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSA--- 313 (393)
Q Consensus 244 ~~l~~~~t~~l~~~ck~-------~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~--- 313 (393)
..++-....++++..++ .++|++.++.=|+..+|.++-. +....--++..... .....+|.-+.+
T Consensus 148 ~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~---~Na~~~~~~~~i~~--~~~vnigvAV~~~~G 222 (347)
T PRK14843 148 YEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPY---INASLTEDGKTIIT--HNYVNLAMAVGMDNG 222 (347)
T ss_pred EEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcc---eeEEEecCCCeEEE--ecccceEEEEecCCC
Confidence 44555555555555442 2589999999999999987641 00000000000000 012234444432
Q ss_pred --ccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 314 --IMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 314 --~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+|+.-. ....++.++++++++-...+.+++
T Consensus 223 L~vPVIr~-a~~~sl~eIa~~i~~l~~~Ar~~k 254 (347)
T PRK14843 223 LMTPVVYN-AEKMSLSELVVAFKDVIGRTLDGK 254 (347)
T ss_pred eEeCcCCC-cccCCHHHHHHHHHHHHHHHHcCC
Confidence 233222 245799999999999888777664
No 63
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=35.76 E-value=3.5e+02 Score=26.36 Aligned_cols=89 Identities=7% Similarity=-0.027 Sum_probs=0.0
Q ss_pred EEEEEeCHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHhcC---------CC-----CceEEEeeccccccCCC
Q 047915 241 VVRLQLNKDDTERILLTCKSR------GIKLCGMLAAAGLIAAHNSD---------NQ-----RKYAVATLTDCRSILEP 300 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~------gvT~~~~l~Aa~~~al~~~~---------g~-----~~~~i~~pv~~R~~~~~ 300 (393)
.....++.....++++.-+++ ++|++.+|.-|+..+|.++- +. ..+.|+..++..+
T Consensus 211 ~~~~eid~~~l~~~r~~~~~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~---- 286 (416)
T PLN02528 211 HYVEEINVDALVELKASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEH---- 286 (416)
T ss_pred EEEEEEEhHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCC----
Q ss_pred CCCCCceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 301 PLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 301 ~~~~~~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+.+...++-....++.++++++++...++.+++
T Consensus 287 -----------GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~gk 319 (416)
T PLN02528 287 -----------GLVVPNIKNVQSLSLLEITKELSRLQHLAAENK 319 (416)
T ss_pred -----------CeEecccCCcccCCHHHHHHHHHHHHHHHHcCC
No 64
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=33.92 E-value=3.3e+02 Score=27.65 Aligned_cols=95 Identities=7% Similarity=-0.019 Sum_probs=51.5
Q ss_pred EEeCHHHHHHHHHHHHh----c--CCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeee----
Q 047915 244 LQLNKDDTERILLTCKS----R--GIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSA---- 313 (393)
Q Consensus 244 ~~l~~~~t~~l~~~ck~----~--gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~---- 313 (393)
..++-...-++++..++ . ++|++.+|.-|+..+|.++---+ ...--++..... .....+|.-+.+
T Consensus 348 ~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~N---a~~~~~~~~i~~--~~~vnigvAv~~~~GL 422 (546)
T TIGR01348 348 DKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFN---ASLDLGGEQLIL--KKYVNIGVAVDTPNGL 422 (546)
T ss_pred EEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhh---EEEeCCCCEEEE--eCCcCEEEEEECCCCe
Confidence 34444444555555543 2 58999999999999998764100 000000000000 001233333321
Q ss_pred -ccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 314 -IMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 314 -~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+|+. +-....++.++++++++...++.+++
T Consensus 423 ~vPvi-~~a~~~sl~~ia~~~~~l~~~ar~g~ 453 (546)
T TIGR01348 423 LVPVI-KDVDRKGITELALELSDLAKKARDGK 453 (546)
T ss_pred EECCc-CCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 2332 22345899999999999988876654
No 65
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=33.89 E-value=3.2e+02 Score=28.10 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=52.3
Q ss_pred EeCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeee----
Q 047915 245 QLNKDDTERILLTCKS-------RGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSA---- 313 (393)
Q Consensus 245 ~l~~~~t~~l~~~ck~-------~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~---- 313 (393)
.++-....++++..+. .++|++.+|+-|+..+|.++-.-+ -.+ --++..... .....+|.-+.+
T Consensus 384 evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~N-a~~--~~~~~~i~~--~~~vnigvAv~t~~GL 458 (590)
T TIGR02927 384 EVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVN-ASY--NADTKEITY--HAAEHLGFAVDTDAGL 458 (590)
T ss_pred EEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhh-eEE--ecCCCEEEE--eCCccEEEEEECCCCc
Confidence 4555555555555543 258999999999999998764100 000 000000000 012234443331
Q ss_pred -ccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 314 -IMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 314 -~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+|+.-. ....++.++++++++...++.+++
T Consensus 459 ~vPvIk~-a~~~sl~~ia~~i~~l~~kAr~gk 489 (590)
T TIGR02927 459 LSPVIHN-AGDLSLGEIAKAIADIAARARNGK 489 (590)
T ss_pred EecccCC-cccCCHHHHHHHHHHHHHHHHcCC
Confidence 233222 245799999999999988887765
No 66
>PF09498 DUF2388: Protein of unknown function (DUF2388); InterPro: IPR012661 This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae pv. tomato str. DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=29.44 E-value=58 Score=22.87 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.1
Q ss_pred EcCCCChHHHHHHHHHHHhhcccccc
Q 047915 42 TSKVPETSGLQDALNKLQSYHPILRS 67 (393)
Q Consensus 42 l~g~ld~~~L~~A~~~l~~rhp~LR~ 67 (393)
-.|.+.=..|+.|++.+..++|-+++
T Consensus 35 SdG~IRGA~LEaAl~~lR~~~p~~~a 60 (72)
T PF09498_consen 35 SDGAIRGARLEAALRQLRQDNPELQA 60 (72)
T ss_pred cCccchHHHHHHHHHHHHhhCCCCCC
Confidence 47888889999999999999998864
No 67
>cd00460 RNAP_RPB11_RPB3 RPB11 and RPB3 subunits of RNA polymerase. The eukaryotic RPB11 and RPB3 subunits of RNA polymerase (RNAP), as well as their archaeal (L and D subunits) and bacterial (alpha subunit) counterparts, are involved in the assembly of RNAP, a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The assembly of the two largest eukaryotic RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of RPB3/RPB11 heterodimer subunits. This is also true for the
Probab=29.28 E-value=1.8e+02 Score=21.08 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCCCccCcccccchhhcccCC------cceeEEEEEEcCCCCh-HHHHHHHHHHHhhcc
Q 047915 3 QSLVEMMMEPKGGRIASGTEYSWCRAVPGG------TGIAVLAILTSKVPET-SGLQDALNKLQSYHP 63 (393)
Q Consensus 3 ~~~~~~~~~~~~~R~l~~~E~~~~~~~~~~------~~~~~~~~~l~g~ld~-~~L~~A~~~l~~rhp 63 (393)
..|...+++ .+.+..-+...... ..++.+.++-.|.+++ ++|+.|+..+..+..
T Consensus 24 n~L~~~l~~-------~pV~~a~Y~v~hp~~~~~~~~d~~~~~VeT~Gs~~P~~al~~Ai~~L~~~~~ 84 (86)
T cd00460 24 NSLRRILLK-------SPVEFAAYYVEHPVKLQRTDEDKFILRIETVGSIPPEEALRRAVEILRKKLE 84 (86)
T ss_pred HHHHHHHhC-------CCceEEEEEeCCCccCCCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 346666666 55554433332221 3466778888898886 578999999887643
No 68
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=28.07 E-value=79 Score=28.00 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=25.5
Q ss_pred eEEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 150 WVVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 150 ~~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
-.+.++++|=++||.-+..|+++|.+.+.
T Consensus 196 ~~lslt~DHRvidG~~aa~Fl~~l~~~le 224 (231)
T PF00198_consen 196 MNLSLTFDHRVIDGAEAARFLKDLKELLE 224 (231)
T ss_dssp EEEEEEEETTTS-HHHHHHHHHHHHHHHH
T ss_pred EEeEEeccceEEcHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999883
No 69
>COG4453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=2.7e+02 Score=20.85 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=32.5
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~ 280 (393)
..+..+++++.-+-|.+++.-.|-|++++++-|..-+..++
T Consensus 11 ~rinlR~~~d~~~Li~~AAai~g~s~tdFvl~aA~~~A~~v 51 (95)
T COG4453 11 ERINLRLTPDQRDLIDRAAAIEGKSLTDFVLSAALEAAEDV 51 (95)
T ss_pred ccceeecCHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999998776554444443
No 70
>PF03533 SPO11_like: SPO11 homologue; InterPro: IPR004084 Spo11 is a meiosis-specific protein in yeast that covalently binds to DNA double-strand breaks (DSBs) during the early stages of meiosis []. These DSBs initiate homologous recombination, which is required for chromosomal segregation and generation of genetic diversity during meiosis. Mouse and human homologues of Spo11 have been cloned and characterised. The proteins are 82% identical and share ~25% identity with other family members. Mouse Spo11 has been localised to chromosome 2H4, and human SPO11 to chromosome 20q13.2-q13.3, a region amplified in some breast and ovarian tumours []. Similarity between SPO11 and archaebacterial TOP6A proteins points to evolutionary specialisation of a DNA-cleavage function for meiotic recombination []. Note that the yeast SPO11 protein shares far less similarity to other SPO11 proteins than the human and mouse homologues do to each other.; GO: 0003677 DNA binding, 0007131 reciprocal meiotic recombination
Probab=21.99 E-value=1.2e+02 Score=18.60 Aligned_cols=25 Identities=0% Similarity=0.048 Sum_probs=21.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 320 IKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 320 v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+.++.+|.+++.+-++.+.++++.+
T Consensus 5 mGPeASFf~vLdrHRasLlaal~~g 29 (43)
T PF03533_consen 5 MGPEASFFEVLDRHRASLLAALRRG 29 (43)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHcc
Confidence 5678899999999999998887654
Done!