Query 047915
Match_columns 393
No_of_seqs 149 out of 1734
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jgp_A Tyrocidine synthetase 3 100.0 1.3E-35 4.5E-40 295.5 32.2 296 14-345 95-406 (520)
2 1l5a_A Amide synthase, VIBH; n 100.0 8.6E-36 2.9E-40 290.2 28.3 282 30-345 17-310 (436)
3 4hvm_A Tlmii; PSI-biology, mid 100.0 6.2E-35 2.1E-39 288.7 28.0 298 12-343 10-331 (493)
4 2vsq_A Surfactin synthetase su 100.0 3.5E-34 1.2E-38 312.7 28.5 312 13-345 10-333 (1304)
5 2xhg_A Tyrocidine synthetase A 100.0 1.3E-33 4.3E-38 277.2 26.9 309 12-345 14-340 (466)
6 1q9j_A PAPA5, polyketide synth 100.0 2.9E-32 9.9E-37 264.0 26.9 294 11-345 3-319 (422)
7 3fot_A 15-O-acetyltransferase; 99.8 9.3E-19 3.2E-23 171.5 24.0 317 14-344 29-404 (519)
8 2xr7_A Malonyltransferase; xen 99.1 3.2E-08 1.1E-12 96.1 23.1 272 48-339 57-354 (453)
9 4g22_A Hydroxycinnamoyl-COA sh 99.0 6.9E-08 2.4E-12 93.3 23.2 268 46-340 56-339 (439)
10 2e1v_A Acyl transferase; BAHD 99.0 9.3E-08 3.2E-12 92.8 23.8 272 48-340 62-353 (454)
11 2bgh_A Vinorine synthase; VS, 98.9 2.7E-07 9.2E-12 88.7 24.4 252 47-340 59-324 (421)
12 2rkv_A Trichothecene 3-O-acety 98.4 1.6E-05 5.3E-10 77.0 20.0 193 134-339 133-340 (451)
13 2k9i_A Plasmid PRN1, complete 92.9 0.41 1.4E-05 30.7 6.6 41 240-280 10-50 (55)
14 3qoq_A Alginate and motility r 92.0 0.49 1.7E-05 32.1 6.1 41 239-279 19-59 (69)
15 1baz_A ARC repressor; transcri 91.5 0.64 2.2E-05 29.7 6.1 39 241-279 9-47 (53)
16 2ba3_A NIKA; dimer, bacterial 90.4 0.7 2.4E-05 29.2 5.5 36 238-273 14-49 (51)
17 2cpg_A REPA protein, transcrip 89.6 0.92 3.2E-05 27.5 5.5 38 241-278 4-41 (45)
18 1p94_A Plasmid partition prote 88.3 0.91 3.1E-05 31.4 5.1 43 237-279 32-74 (76)
19 3l60_A Branched-chain alpha-ke 87.3 12 0.0004 32.5 12.8 28 151-178 206-233 (250)
20 2kel_A SVTR protein, uncharact 85.6 3.2 0.00011 26.7 6.3 40 240-279 14-53 (56)
21 1u9p_A PARC; unknown function; 85.1 2.6 8.9E-05 31.7 6.4 39 241-279 20-58 (120)
22 1nla_A Transcriptional repress 84.9 1.5 5E-05 29.2 4.5 38 243-280 11-48 (64)
23 2gpe_A Bifunctional protein PU 84.6 3.2 0.00011 26.0 6.0 41 240-280 4-44 (52)
24 2ay0_A Bifunctional PUTA prote 81.3 6.4 0.00022 25.5 6.5 41 240-280 4-44 (58)
25 2an7_A Protein PARD; bacterial 76.9 3.5 0.00012 28.4 4.1 33 241-273 3-35 (83)
26 2k5j_A Uncharacterized protein 76.3 7.6 0.00026 27.0 6.1 40 241-280 11-50 (80)
27 1mnt_A MNT repressor; transcri 75.8 4.3 0.00015 28.0 4.6 38 242-279 7-44 (76)
28 3cla_A Type III chloramphenico 75.7 2.2 7.4E-05 36.2 3.7 28 151-178 182-209 (213)
29 2i9d_A Chloramphenicol acetylt 74.2 2.4 8.1E-05 36.0 3.6 27 151-177 190-216 (217)
30 1q23_A Chloramphenicol acetylt 72.9 2.7 9.1E-05 35.8 3.6 28 151-178 186-213 (219)
31 3rqc_A Probable lipoamide acyl 70.5 3.8 0.00013 34.9 4.0 28 151-178 188-215 (224)
32 1scz_A E2, dihydrolipoamide su 67.9 4.6 0.00016 34.6 4.0 28 151-178 197-224 (233)
33 1dpb_A Dihydrolipoyl-transacet 66.9 4.3 0.00015 35.0 3.7 28 151-178 209-236 (243)
34 3b8k_A PDCE2;, dihydrolipoylly 66.0 4 0.00014 35.2 3.2 29 150-178 204-232 (239)
35 3b8k_A PDCE2;, dihydrolipoylly 64.9 47 0.0016 28.3 9.9 87 243-344 41-144 (239)
36 2ii3_A Lipoamide acyltransfera 64.1 5.7 0.00019 34.7 3.9 28 151-178 225-252 (262)
37 3cla_A Type III chloramphenico 62.0 55 0.0019 27.3 9.6 76 252-343 37-125 (213)
38 1q23_A Chloramphenicol acetylt 61.7 50 0.0017 27.7 9.3 76 252-343 42-130 (219)
39 1scz_A E2, dihydrolipoamide su 60.5 45 0.0015 28.3 8.9 87 243-344 33-138 (233)
40 3mae_A 2-oxoisovalerate dehydr 57.7 9.1 0.00031 33.3 4.0 28 151-178 211-238 (256)
41 3mae_A 2-oxoisovalerate dehydr 57.0 72 0.0025 27.5 9.7 87 243-344 47-152 (256)
42 3rqc_A Probable lipoamide acyl 56.5 55 0.0019 27.6 8.7 87 243-344 35-137 (224)
43 2i9d_A Chloramphenicol acetylt 55.7 74 0.0025 26.6 9.3 76 252-343 39-128 (217)
44 2bsq_E FITA, trafficking prote 55.5 26 0.00089 24.1 5.2 35 244-278 6-40 (77)
45 4fxe_A Antitoxin RELB; toxin/a 50.0 43 0.0015 23.1 5.7 36 242-277 4-39 (79)
46 1y9b_A Conserved hypothetical 48.3 49 0.0017 23.4 5.9 40 240-279 6-46 (90)
47 3h87_C Putative uncharacterize 48.3 26 0.00089 23.8 4.2 34 244-277 7-40 (73)
48 1dpb_A Dihydrolipoyl-transacet 45.0 96 0.0033 26.4 8.5 87 243-344 44-150 (243)
49 3l60_A Branched-chain alpha-ke 43.2 93 0.0032 26.7 8.1 96 243-344 43-147 (250)
50 2ii3_A Lipoamide acyltransfera 41.8 1.3E+02 0.0045 25.9 8.9 87 243-344 59-165 (262)
51 3dva_I Dihydrolipoyllysine-res 34.9 8.1 0.00028 36.4 0.0 28 151-178 392-419 (428)
52 2hza_A Nickel-responsive regul 32.5 1.2E+02 0.0042 23.0 6.5 40 241-280 3-43 (133)
53 1nm8_A Carnitine O-acetyltrans 30.9 1.2E+02 0.0042 29.8 7.7 43 256-299 399-441 (616)
54 3kk4_A Uncharacterized protein 30.7 68 0.0023 24.2 4.4 34 240-273 28-61 (125)
55 4hv0_A AVTR; ribbon-helix-heli 25.3 1.4E+02 0.0049 21.4 5.0 35 244-278 3-37 (106)
56 2wvf_A Hpnikr, putative nickel 24.0 1.4E+02 0.0048 23.2 5.5 41 240-280 11-52 (148)
57 2bj7_A Nickel responsive regul 23.4 1.6E+02 0.0054 22.5 5.7 40 241-280 5-45 (138)
No 1
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=100.00 E-value=1.3e-35 Score=295.48 Aligned_cols=296 Identities=13% Similarity=0.106 Sum_probs=223.3
Q ss_pred CCccCcccccc-hhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCccee
Q 047915 14 GGRIASGTEYS-WCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQ 89 (393)
Q Consensus 14 ~~R~l~~~E~~-~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~ 89 (393)
...+|++.... |+.. .....||....++++|.+|.++|++||+.+++|||+||++|...++++.+++.... .++
T Consensus 95 ~~~pls~~Q~~~~~~~~~~~~~~~y~~~~~~~l~g~ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~--~~~ 172 (520)
T 2jgp_A 95 AYYPVSSAQKRMYILDQFEGVGISYNMPSTMLIEGKLERTRVEAAFQRLIARHESLRTSFAVVNGEPVQNIHEDV--PFA 172 (520)
T ss_dssp SSEECCHHHHHHHHHHHHTCCTTTTBCCEEEEEEECCCHHHHHHHHHHHHHHCGGGGEEEEEETTEEEEEECSCC--CCC
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCcccceEEEEECCCCCHHHHHHHHHHHHHHhHhheeEEEeeCCEEEEEECCCC--CCc
Confidence 44577777654 4432 33457899999999999999999999999999999999999877666666654432 333
Q ss_pred eeecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHH
Q 047915 90 VKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSL 169 (393)
Q Consensus 90 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~ 169 (393)
+...+++ .+++.+ +.++..+ ||++ .++|++|+.+++.+++++.|++.+||+++||||+.+|
T Consensus 173 ~~~~~~~-------------~~~~~~-~~~~~~~-~fdl----~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l 233 (520)
T 2jgp_A 173 LAYSEVT-------------EEEARE-LVSSLVQ-PFDL----EVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSGIL 233 (520)
T ss_dssp CEEEECC-------------HHHHHH-HHHHTCC-CCCT----TSSCCEEEEEEEEETTEEEEEEEEBGGGCCHHHHHHH
T ss_pred eEEEeCC-------------HHHHHH-HHHHhcC-CCCC----CCCcceeEEEEEEcCCcEEEEEEccceeecHhHHHHH
Confidence 4333311 223333 4556666 8998 6899999999998888899999999999999999999
Q ss_pred HHHHHHHHhcCCCccccccCCCChhHHhhc------CCC---cchhHHHHhhhhhhhcccccccccccCCcCC--C-CCC
Q 047915 170 LKELLLVLVSDDDQEQEGRGEVNLAIEALI------PKG---KAKKALWARGRDMLTYSVNSLKSTNLKFIDA--K-SPR 237 (393)
Q Consensus 170 ~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~--~-~~~ 237 (393)
+++|..+|.+..... .+.++.++. ... ...+.||.+.+... .+...+|...+ . ...
T Consensus 234 ~~el~~~Y~~~~l~~------~~~~~~d~~~~~~~~~~~~~~~~~~~yW~~~l~~~------~~~~~lp~~~~~~~~~~~ 301 (520)
T 2jgp_A 234 LAEWVQLYQGDVLPE------LRIQYKDFAVWQQEFSQSAAFHKQEAYWLQTFADD------IPVLNLPTDFTRPSTQSF 301 (520)
T ss_dssp HHHHHHHHTTCCCCC------CSCCHHHHHHHHHHHTTSHHHHHHHHHHHHHTSSC------CCCCCCCCSSCCCSSCCC
T ss_pred HHHHHHHHccCCCCC------CCCCHHHHHHHHHHhhcChhhHHHHHHHHHHhCCC------CCcCCCCCCCCCCCCCCC
Confidence 999999995432111 111222211 111 12457887765321 11223443321 1 122
Q ss_pred cccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccce
Q 047915 238 SSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNT 317 (393)
Q Consensus 238 ~~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~ 317 (393)
......+.++.+.+.+|.+.||++|+|++++++|||+.++++++|++++.+|+|+++|... .. ..++|+|+|++|++
T Consensus 302 ~~~~~~~~l~~~~~~~l~~~a~~~~~T~~~~l~aa~a~~L~~~~~~~dv~~g~~~~gR~~~--~~-~~~vG~f~n~lplr 378 (520)
T 2jgp_A 302 AGDQCTIGAGKALTEGLHQLAQATGTTLYMVLLAAYNVLLAKYAGQEDIIVGTPITGRSHA--DL-EPIVGMFVNTLAMR 378 (520)
T ss_dssp BEEEEEEECCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCSCEEEEEEECCCCSG--GG-TTCCSCCCEEEEEE
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCeEEEeccCCCCch--hh-hccEEeeeeeeeEE
Confidence 3456678899999999999999999999999999999999999999999999999999863 22 57999999999999
Q ss_pred eeCCCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 318 HLIKSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 318 ~~v~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
++++++.+|.++++++++++.++++|+.
T Consensus 379 ~~~~~~~~~~~~l~~v~~~~~~~~~h~~ 406 (520)
T 2jgp_A 379 NKPQREKTFSEFLQEVKQNALDAYGHQD 406 (520)
T ss_dssp ECCCTTSBHHHHHHHHHHHHHHHHHTCC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999976
No 2
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=100.00 E-value=8.6e-36 Score=290.21 Aligned_cols=282 Identities=12% Similarity=0.003 Sum_probs=214.8
Q ss_pred cCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeeecccCccccccccccccc
Q 047915 30 PGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFS 109 (393)
Q Consensus 30 ~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 109 (393)
....||+...+++.|.+|.++|++||+.+++|||+||++|...++ ++.... .+++..++++. . ...
T Consensus 17 ~~~~y~~~~~~~l~g~ld~~~L~~A~~~lv~rh~~LRt~f~~~~~----~v~~~~--~~~~~~~d~~~-------~-~~~ 82 (436)
T 1l5a_A 17 HINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGE----LYWHPF--SPPIDYQDLSI-------H-LEA 82 (436)
T ss_dssp TSCCSEEEEEEEEESSCCHHHHHHHHHHHHHTCGGGGEEECTTCC----EEECSS--CCCCEEEECTT-------C-TTH
T ss_pred CCCccceeEEEEEeCCCCHHHHHHHHHHHHHHhheeEEEEEecCC----eECCCc--CCCccEEeCCC-------C-CCH
Confidence 345699999999999999999999999999999999999987654 333222 34444444321 0 111
Q ss_pred hhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhc---CCCcccc
Q 047915 110 IAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVS---DDDQEQE 186 (393)
Q Consensus 110 ~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~---~~~~~~~ 186 (393)
+..+.+.+.++..+ ||++ .++|++|+.+++.+++++.|++.+||+++||||+.+|+++|..+|.+ +.....
T Consensus 83 ~~~~~~~~~~~~~~-~fdl----~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~~~~~g~~~~~- 156 (436)
T 1l5a_A 83 EPLAWRQIEQDLQR-SSTL----IDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQTPTA- 156 (436)
T ss_dssp HHHHHHHHHHHHTS-CCCC----BTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHTCCCCC-
T ss_pred HHHHHHHHHHHhcC-CCCc----CCCCCeEEEEEEEcCCEEEEEEeehhheecHhHHHHHHHHHHHHHHHHhcCCCCCC-
Confidence 33455666777777 9998 68999999999988889999999999999999999999999999963 221110
Q ss_pred ccCCCChhHHhhcC------CC---cchhHHHHhhhhhhhcccccccccccCCcCCCCCCcccEEEEEeCHHHHHHHHHH
Q 047915 187 GRGEVNLAIEALIP------KG---KAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLT 257 (393)
Q Consensus 187 ~~~~~~~~~~~~~~------~~---~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~t~~l~~~ 257 (393)
...++.++.. .. ...+.||.+.+... ..+..+|............+.+.++.+.+.+|.+.
T Consensus 157 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~------~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 226 (436)
T 1l5a_A 157 ----AFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREA------PDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKL 226 (436)
T ss_dssp ----CCCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTS------CCCCBCCTTCCGGGCCEEEEEEECCHHHHHHHHHH
T ss_pred ----CccCHHHHHHHHHHhhccHhHHHHHHHHHHHhcCC------CCcccCCCCCCCCcccceeeEEecCHHHHHHHHHH
Confidence 1122322211 11 22567888876432 11123343221112233466788999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCCCCcHHHHHHHHHHHH
Q 047915 258 CKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAF 337 (393)
Q Consensus 258 ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~ 337 (393)
||++|+|++++++|||+.++++++| +++.+|+|+++|... .. ..++|+|+|++|++++++++.+|.++++++++++
T Consensus 227 a~~~~~t~~~~l~aa~~~~L~~~~g-~dv~ig~~~~~R~~~--~~-~~~vG~f~n~lplr~~~~~~~t~~~~l~~v~~~~ 302 (436)
T 1l5a_A 227 ANANQIGWPDALVALCALYLESAEP-DAPWLWLPFMNRWGS--VA-ANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAI 302 (436)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHST-TCCEEEEEECCCTTS--GG-GGSCSCCCEEEEEECCCCTTCBHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhC-CceEEeeecccCCCh--HH-hcCcceEEEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999752 22 5799999999999999999999999999999999
Q ss_pred HhhhccCC
Q 047915 338 VNSKHCNR 345 (393)
Q Consensus 338 ~~~~~~~~ 345 (393)
.++++|+.
T Consensus 303 ~~~~~h~~ 310 (436)
T 1l5a_A 303 RSLYLHGR 310 (436)
T ss_dssp HHHHHTTT
T ss_pred HHHhhhcC
Confidence 99999976
No 3
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=100.00 E-value=6.2e-35 Score=288.72 Aligned_cols=298 Identities=14% Similarity=0.085 Sum_probs=212.7
Q ss_pred CCCCccCcccccchhhc----ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcc
Q 047915 12 PKGGRIASGTEYSWCRA----VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTF 87 (393)
Q Consensus 12 ~~~~R~l~~~E~~~~~~----~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~ 87 (393)
+...-+|++..+.+|.. .... ||+...++++|.+|.++|++||+.+++|||+||++|...++++. ++....
T Consensus 10 ~~~~~Pls~~Q~~~~~~~~~~~~~~-y~~~~~~~l~g~ld~~~L~~A~~~lv~rh~~LRt~f~~~~~~~~-~v~~~~--- 84 (493)
T 4hvm_A 10 RPGLRRASFLQRGAWRWLREAPPAA-AFAARGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDGLWM-RTRENA--- 84 (493)
T ss_dssp --CEEECCHHHHHHHHHHTTSCGGG-GEEEEEEEEESSCCHHHHHHHHHHHHHHCGGGGEEEEESSSEEE-EECSCC---
T ss_pred CCCCCCCCHHHHHHHHHHhhCCCCc-ceeEEEEEEeCCCCHHHHHHHHHHHHHhchhceeEEEccCCEEE-EecCCC---
Confidence 45667899987654322 2234 99999999999999999999999999999999999998776555 443322
Q ss_pred eeeeecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHH
Q 047915 88 IQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAV 167 (393)
Q Consensus 88 i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~ 167 (393)
+++..++++.. . ..+..+.+.+.++.++ ||++ .++|+||+.+++.+++++.|++.+||+++||||+.
T Consensus 85 ~~~~~~d~~~~------~--~~~~~~~~~~~~~~~~-~fdl----~~~pl~r~~l~~~~~~~~~l~l~~HH~i~Dg~S~~ 151 (493)
T 4hvm_A 85 DALVRSDLRGH------P--DPQARCVELLRADRDR-PTDP----ERDPLVRLHLVRLSETDVVLGVVAHQMLLDARSRY 151 (493)
T ss_dssp CCEEEEECTTS------S--SHHHHHHHHHHHHHSS-CCCT----TTSCSEEEEEEECSSSEEEEEEEEETTTCCHHHHH
T ss_pred CCceEEECCCC------C--chHHHHHHHHHHHhcC-CCCC----CCCCeEEEEEEEECCCcEEEEEecchhhccHHHHH
Confidence 44555543211 1 1125566667777777 9998 68999999999988888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccccccCCCChhHHhh--cCC---CcchhHHHHhhhhhhhcccccccccccCCcCCCCCCcccEE
Q 047915 168 SLLKELLLVLVSDDDQEQEGRGEVNLAIEAL--IPK---GKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVV 242 (393)
Q Consensus 168 ~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 242 (393)
+|+++|..+| .+.... ..+ .....++.. ... ....+.||.+.+... ++ + ...+.+......+
T Consensus 152 ~l~~~l~~~Y-~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~-------~~--l-~~~~~~~~~~~~~ 218 (493)
T 4hvm_A 152 MVLGAVWQAY-YGRFRP-AQY-RDFAEVADFHPLDRETVRVARHRWWSRRLPAL-------PV--R-GGDGGPVGPPETS 218 (493)
T ss_dssp HHHHHHHHHH-TTCCCG-GGS-BCGGGTTTCCTTCSHHHHHHHHHHHHHHGGGS-------CC--C-C-------CCEEE
T ss_pred HHHHHHHHHh-CCCCCC-cCH-HHHHHHHhhhhcccChhhHHHHHHHHHhccCC-------CC--C-CCCCCCCCCCeeE
Confidence 9999999999 443211 111 111111110 000 112567888876432 11 1 1111111124567
Q ss_pred EEEeCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhc-----------CCCCceEEEeeccccccCCCCCCCCceee
Q 047915 243 RLQLNKDDTERILLTCKSRGIK--LCGMLAAAGLIAAHNS-----------DNQRKYAVATLTDCRSILEPPLSNHRFGF 309 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~~gvT--~~~~l~Aa~~~al~~~-----------~g~~~~~i~~pv~~R~~~~~~~~~~~~G~ 309 (393)
...++.+.+.+|.++||++|+| ++++++|||+.+++++ +|++++.+|+|+++|... .. ..++|+
T Consensus 219 ~~~l~~~~~~~l~~~a~~~~vt~~~~~~l~aa~a~~L~~~~~~~~~~~~~~~g~~dv~~g~~~~gR~~~--~~-~~~vG~ 295 (493)
T 4hvm_A 219 RLRVPGSRWQALTEPGGPLGGNGSLAMAALTAWWLWTQGAGTGTDTGAGTGTGKDSLYLSTEVDLRDHL--QL-GSVVGP 295 (493)
T ss_dssp EEEEEHHHHHHHHCC------CHHHHHHHHHHHHHHHC----------------CEEEEEEEEEHHHHT--TC-CSBCSC
T ss_pred EEEcCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhcccccccCcCCCCCEEEEeeccCCCCc--ch-hcCeEe
Confidence 7899999999999999999999 9999999999999999 999999999999999763 23 579999
Q ss_pred EeeeccceeeCCC--CCcHHHHHHHHHHHHHhhhcc
Q 047915 310 YHSAIMNTHLIKS--GEKLGDLAKKIYTAFVNSKHC 343 (393)
Q Consensus 310 ~~~~~~~~~~v~~--~~~f~~la~~v~~~~~~~~~~ 343 (393)
|+|++|+++++++ +.+|.++++++++++.++++|
T Consensus 296 f~n~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h 331 (493)
T 4hvm_A 296 LTDRVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH 331 (493)
T ss_dssp CEEEEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT
T ss_pred eeceeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999 999999999999999999999
No 4
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.5e-34 Score=312.74 Aligned_cols=312 Identities=11% Similarity=0.078 Sum_probs=231.4
Q ss_pred CCCccCccccc-chhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCC-CCceEeeCCCCcc
Q 047915 13 KGGRIASGTEY-SWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPS-KNTFSFVTSPTTF 87 (393)
Q Consensus 13 ~~~R~l~~~E~-~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~-~~~~~~~~~~~~~ 87 (393)
+..-+|++..+ +|+.. .....||+...++++|.+|.++|++||+.+++|||+||++|...++ ++.|++.... .
T Consensus 10 ~d~~PLS~~Q~~lw~~~~~~~~~~~Y~~~~~~~l~g~ld~~~l~~A~~~lv~rH~~LRt~f~~~~~~~p~Q~v~~~~--~ 87 (1304)
T 2vsq_A 10 QDMYYLSPMQEGMLFHAILNPGQSFYLEQITMKVKGSLNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKR--Q 87 (1304)
T ss_dssp EEEEECCHHHHHHHHHHHHSTTSCTTEEEEEEEEEECCCHHHHHHHHHHHHHHCGGGGEEEECSSCSSCEEEEESCC--C
T ss_pred CCcCCCCHHHHHHHHHHhhCCCCCceEEEEEEEEcCCcCHHHHHHHHHHHHHhhhhceEEEEEcCCCeEEEEECCCC--C
Confidence 34457777654 45433 3345799999999999999999999999999999999999987654 4777665443 4
Q ss_pred eeeeecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHH
Q 047915 88 IQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAV 167 (393)
Q Consensus 88 i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~ 167 (393)
+++..+|++.. ++......+.+.+.++..+ ||++ .++|+||+.+++++++++.|++.+||+++||||+.
T Consensus 88 ~~~~~~d~~~~------~~~~~~~~~~~~~~~~~~~-~fdl----~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~ 156 (1304)
T 2vsq_A 88 FHIEEIDLTHL------TGSEQTAKINEYKEQDKIR-GFDL----TRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFG 156 (1304)
T ss_dssp CCEEEEECTTS------CHHHHHHHHHHHHHHHHHH-CCCT----TTSCSEEEEEEEEETTEEEEEEEEEGGGCCHHHHH
T ss_pred CceEEEECCCC------CchhHHHHHHHHHHHHhcC-CCCC----CCCCcEEEEEEEECCCcEEEEEecCceeechhhHH
Confidence 45555553321 1111123455556666777 9999 68999999999988889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccccccCCCChhHHhhc---CC--CcchhHHHHhhhhhhhcccccccccccCCcC--CCCCCccc
Q 047915 168 SLLKELLLVLVSDDDQEQEGRGEVNLAIEALI---PK--GKAKKALWARGRDMLTYSVNSLKSTNLKFID--AKSPRSSQ 240 (393)
Q Consensus 168 ~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~--~~~~~~~~ 240 (393)
+|+++|.++|.+........ .+..+++.++. .. ....+.||++.+.... .+..+|... +.......
T Consensus 157 ~l~~el~~~Y~~~~~g~~~~-l~~~~~y~d~~~~~~~~~~~~~~~yW~~~L~~~~------~~~~lp~~~~~~~~~~~~~ 229 (1304)
T 2vsq_A 157 IVVQDLFKVYNALREQKPYS-LPPVKPYKDYIKWLEKQDKQASLRYWREYLEGFE------GQTTFAEQRKKQKDGYEPK 229 (1304)
T ss_dssp HHHHHHHHHHHHHHTTCCCC-CCCCCCTHHHHHHHHTSCHHHHHHHHHHHHTTCC------CCCTTTTTCCCSSCCCCEE
T ss_pred HHHHHHHHHHHHhhcCCCCC-CCCcccHHHHHHHHhcchhhHHHHHHHHHhCCCC------ccccCCCCCCccccccCcc
Confidence 99999999996311100000 01111222221 11 1225678988774321 112233321 11123345
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceeeC
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLI 320 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v 320 (393)
...+.++++.+.+|+++||++|+|++++++|||+.++++++|++++.+|+|+++|....+.. ..++|+|+|++|+++++
T Consensus 230 ~~~~~l~~~~~~~L~~~a~~~~~T~~~vllaa~a~~L~r~tg~~dvv~G~pvsgR~~~~~~~-~~~vG~fvntlplr~~~ 308 (1304)
T 2vsq_A 230 ELLFSPSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQQSGDLAFGTVVSGRPAEIKGV-EHMVGLFINVVPRRVKL 308 (1304)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSEEEEEEEECCCCTTSTTG-GGCCSSCCEEEEEEEEC
T ss_pred eEEEecCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCccchhh-hcccccceeEEEEEecC
Confidence 66788999999999999999999999999999999999999999999999999997532333 57999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 321 KSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 321 ~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
+++.+|.++++++++++.++++|++
T Consensus 309 ~~~~s~~~ll~~v~~~~~~a~~hq~ 333 (1304)
T 2vsq_A 309 SEGITFNGLLKRLQEQSLQSEPHQY 333 (1304)
T ss_dssp CTTCBHHHHHHHHHHHHHHHGGGTT
T ss_pred CCCCcHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999976
No 5
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=100.00 E-value=1.3e-33 Score=277.21 Aligned_cols=309 Identities=12% Similarity=0.083 Sum_probs=221.3
Q ss_pred CCCCccCcccccchhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcce
Q 047915 12 PKGGRIASGTEYSWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFI 88 (393)
Q Consensus 12 ~~~~R~l~~~E~~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i 88 (393)
+...-+|++... |+.. .....||..+.+++.|.+|.++|++||+.+++|||+||++|...++++.+.+.......+
T Consensus 14 ~~~~~pls~~Q~-~~~~~~~~~~~~y~~~~~~~l~g~ld~~~L~~Al~~lv~rh~~LRt~f~~~~~~~~q~v~~~~~~~~ 92 (466)
T 2xhg_A 14 IAGNVPLTPIQK-WFFGKNFTNTGHWNQSSVLYRPEGFDPKVIQSVMDKIIEHHDALRMVYQHENGNVVQHNRGLGGQLY 92 (466)
T ss_dssp CCEECCCCHHHH-HHHHTTCTTTTCBEEEEEEEETTCCCHHHHHHHHHHHHHHSGGGGEEEECGGGCCEEEECCSSSCCC
T ss_pred cCCCCCCCHHHH-HHHhCCCCCcCcceeEEEEEcCCCCCHHHHHHHHHHHHHhChHhheEEecCCCceeeeccccccccc
Confidence 445567888877 5433 334568999999999999999999999999999999999999776666666543211245
Q ss_pred eeeecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHH
Q 047915 89 QVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVS 168 (393)
Q Consensus 89 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~ 168 (393)
.+..+|++.. ...++....+.++..+ ||++ .++|++|+.+++.+++. +|++.+||+++||||+.+
T Consensus 93 ~~~~~d~~~~---------~~~~~~~~~~~~~~~~-~fdl----~~~pl~r~~l~~~~~~~-~l~l~~HH~i~Dg~S~~~ 157 (466)
T 2xhg_A 93 DFFSYNLTAQ---------PDVQQAIEAETQRLHS-SMNL----QEGPLVKVALFQTLHGD-HLFLAIHHLVVDGISWRI 157 (466)
T ss_dssp EEEEEECTTC---------SCHHHHHHHHHHHHHT-TCCT----TTCCCEEEEEEEETTEE-EEEEEEEGGGCCHHHHHH
T ss_pred eeEEEecCCc---------ccHHHHHHHHHHHHHh-ccCC----CCCCeEEEEEEEcCCCC-EEEEEeeeeeechhhHHH
Confidence 5555553211 1112222223445566 8998 68999999999977655 488999999999999999
Q ss_pred HHHHHHHHHhcCCCccccccCCCChhHHhhc------CCC---cchhHHHHhhhhhhhcccccccccccCCcCCCC---C
Q 047915 169 LLKELLLVLVSDDDQEQEGRGEVNLAIEALI------PKG---KAKKALWARGRDMLTYSVNSLKSTNLKFIDAKS---P 236 (393)
Q Consensus 169 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~~---~ 236 (393)
|+++|..+|.+..........+...++.++. ... ...+.||.+.+... ++..+|...+.+ .
T Consensus 158 l~~el~~~Y~~~~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~-------~~~~lp~~~~~~~~~~ 230 (466)
T 2xhg_A 158 LFEDLATGYAQALAGQAISLPEKTDSFQSWSQWLQEYANEADLLSEIPYWESLESQA-------KNVSLPKDYEVTDCKQ 230 (466)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHHHHHHHTTSHHHHTTHHHHHHHHHHC-------CCCCCCCSSCCSSCBG
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCccchhhhHHHHHhhccC-------CcccCCcccccccccc
Confidence 9999999995311100000001112222221 111 12567888876431 122344433211 1
Q ss_pred CcccEEEEEeCHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCC--CCCCCCceeeEeee
Q 047915 237 RSSQVVRLQLNKDDTERILLTC-KSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILE--PPLSNHRFGFYHSA 313 (393)
Q Consensus 237 ~~~~~~~~~l~~~~t~~l~~~c-k~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~--~~~~~~~~G~~~~~ 313 (393)
.....+.+.++++.+.+|++.| +++|+|++++++|||+.++++++|++++.+++|+++|.... +.. ..++|+|+|+
T Consensus 231 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~t~~~~llaa~~~~l~~~~~~~dv~ig~~~~gR~~~~~~~~~-~~~vG~f~n~ 309 (466)
T 2xhg_A 231 KSVRNMRIRLHPEETEQLLKHANQAYQTEINDLLLAALGLAFAEWSKLAQIVIHLEGHGREDIIEQANV-ARTVGWFTSQ 309 (466)
T ss_dssp GGEEEEEEECCHHHHHHHHHTGGGTTTCCHHHHHHHHHHHHHHHHHCCSEEEEEEEECCCCSCSTTCCC-TTCCSCCCEE
T ss_pred ccceEEEEEcCHHHHHHHHHHhHHhhCCCHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCccccCCCc-cccccceeee
Confidence 2334567889999999999988 57899999999999999999999999999999999998642 222 5799999999
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 314 IMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 314 ~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
+|++++++++.+|.+++++|++++.+. .|+.
T Consensus 310 lplr~~~~~~~~~~~~l~~v~~~~~~~-~~~~ 340 (466)
T 2xhg_A 310 YPVLLDLKQTAPLSDYIKLTKENMRKI-PRKG 340 (466)
T ss_dssp EEEEEECSCCCSHHHHHHHHHHHHHHS-GGGG
T ss_pred ccEEEecCCCCCHHHHHHHHHHHHHhC-ccCC
Confidence 999999999999999999999998774 5543
No 6
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=100.00 E-value=2.9e-32 Score=264.01 Aligned_cols=294 Identities=17% Similarity=0.155 Sum_probs=203.1
Q ss_pred CCCCCccCcccccchhhcccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCccee-
Q 047915 11 EPKGGRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQ- 89 (393)
Q Consensus 11 ~~~~~R~l~~~E~~~~~~~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~- 89 (393)
.....++|++.+..++.. .||+...++++|++|.++|++||+.+++|||+||++|...++++.+++.... ..+
T Consensus 3 ~~~~~~pls~~Q~~~~~~----~y~~~~~~~l~g~ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~--~~~~ 76 (422)
T 1q9j_A 3 PGSVIRKLSHSEEVFAQY----EVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDL--LHSG 76 (422)
T ss_dssp TTSEEEECCHHHHHHHHT----TCEEEEEEEEESCCCHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEEECCS--SSCC
T ss_pred CCceeecCCHHHHHHHhc----CceEEEEEEEecCCCHHHHHHHHHHHHHhCccceEEEEecCCcceeeeccCC--CCCc
Confidence 345678999999876642 2999999999999999999999999999999999999987776755554432 222
Q ss_pred eeecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHH
Q 047915 90 VKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSL 169 (393)
Q Consensus 90 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~ 169 (393)
+..++++. .+ .... +.+ ... ||+. ++|+||+.+++ +++++.|++.+||+++||||+.+|
T Consensus 77 ~~~~d~~~-------~~--~~~~----~~~-~~~-~~d~-----~~pl~r~~l~~-~~~~~~l~l~~hH~i~Dg~S~~~l 135 (422)
T 1q9j_A 77 ICVIDGTA-------AT--NGSP----SGN-AEL-RLDQ-----SVSLLHLQLIL-REGGAELTLYLHHCMADGHHGAVL 135 (422)
T ss_dssp CEEEC--------------------------CCC-CCCT-----TTCSEEEEEEC-CSSSCEEEEEEEGGGCCHHHHHHH
T ss_pred eEEEECCC-------CC--cchh----hhc-ccC-ccCC-----CCCcEEEEEEe-cCCCeEEEEEeceEEEchhhHHHH
Confidence 44443221 00 0111 111 233 7773 78999999999 888999999999999999999999
Q ss_pred HHHHHHHHhc----CCCccccccCCCChhHHhh--cCC--------Ccc-hhHHHHhhhhhhhcccccccccccCCcCCC
Q 047915 170 LKELLLVLVS----DDDQEQEGRGEVNLAIEAL--IPK--------GKA-KKALWARGRDMLTYSVNSLKSTNLKFIDAK 234 (393)
Q Consensus 170 ~~~l~~~y~~----~~~~~~~~~~~~~~~~~~~--~~~--------~~~-~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~ 234 (393)
+++|..+|.+ +....... .+........ ... ... .++||.+.+. ....+|...+.
T Consensus 136 ~~~l~~~Y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~---------~~~~lp~~~~~ 205 (422)
T 1q9j_A 136 VDELFSRYTDAVTTGDPGPITP-QPTPLSMEAVLAQRGIRKQGLSGAERFMSVMYAYEIP---------ATETPAVLAHP 205 (422)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCC-CCCCBCHHHHHHHSSCCC-----CTTSSTTTTCC----------------------C
T ss_pred HHHHHHHHHHhhccCCCCCCCC-CCCCCCHHHHHHhcCCcccccchhhhhhhhhhcccCC---------CcccCCCCCCC
Confidence 9999999963 22111100 0011111110 000 000 1345554331 11223332211
Q ss_pred C-CCcccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--CCCCceEEEeeccccccCCC----CCCCCce
Q 047915 235 S-PRSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS--DNQRKYAVATLTDCRSILEP----PLSNHRF 307 (393)
Q Consensus 235 ~-~~~~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~--~g~~~~~i~~pv~~R~~~~~----~~~~~~~ 307 (393)
. ........+.++.+.+++|+++||++|+|++++++|||+.+++++ +|++++.+|+|+++|....+ +....++
T Consensus 206 ~~~~~~~~~~~~l~~~~~~~l~~~a~~~~~t~~~~l~aa~~~~l~r~~~~~~~~v~~g~~~~~R~~~~~~~~~~~~~~~v 285 (422)
T 1q9j_A 206 GLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLL 285 (422)
T ss_dssp CSBCCCCEEEECCCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHTCSSCCEEEEEEEETTTTSSSCCCTTTBSCCE
T ss_pred CCCCCccceEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCceEEEeeeeecccccCCCCChhhhhhhh
Confidence 1 122346678899999999999999999999999999999999977 88899999999999986421 1125799
Q ss_pred eeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccCC
Q 047915 308 GFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNR 345 (393)
Q Consensus 308 G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~~ 345 (393)
|+|+|++|++. +.+|.++++++++++.++++|+.
T Consensus 286 G~f~n~lp~~~----~~~~~~~l~~v~~~~~~~~~~~~ 319 (422)
T 1q9j_A 286 GAASYLAEIGP----NTDIVDLASDIVATLRADLANGV 319 (422)
T ss_dssp EEEEEEECCCS----SCCHHHHHHHHHHHHHHHHHHTH
T ss_pred eeeeeeeeccC----CCCHHHHHHHHHHHHHHHHhcCe
Confidence 99999998653 56899999999999999999975
No 7
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=99.83 E-value=9.3e-19 Score=171.51 Aligned_cols=317 Identities=13% Similarity=0.065 Sum_probs=187.0
Q ss_pred CCccCcccccchhhcc--cCCcceeEE--EEEEcCCCC--------hHHHHHHHHHHHhhcccccceeccCCCCC-ceEe
Q 047915 14 GGRIASGTEYSWCRAV--PGGTGIAVL--AILTSKVPE--------TSGLQDALNKLQSYHPILRSRLHTNPSKN-TFSF 80 (393)
Q Consensus 14 ~~R~l~~~E~~~~~~~--~~~~~~~~~--~~~l~g~ld--------~~~L~~A~~~l~~rhp~LR~~~~~~~~~~-~~~~ 80 (393)
..|+++..|.++.... ..+.|.... .+++.-+++ .++|++||..+..+||.|.+.+..+++.+ ...+
T Consensus 29 ~~R~~~g~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~l~~~lr~AW~~lR~~hP~iA~~v~~d~~~~~~~~Y 108 (519)
T 3fot_A 29 VQRRCVGAEAIVGLEEKNRRALYDLYIATSLRNIAPASTLLTLQNLKEMFELALLDARFEHPECACTVSWDDEVPAIITY 108 (519)
T ss_dssp EEEECCTHHHHHHCHHHHTTTTTCEEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHCGGGGCEEECCSSSSCEEEE
T ss_pred EEeecCccHHHHHHhhhcCCCcceEEEEEEEEecCCCCccccHHHHHHHHHHHHHHHHhhCCcceeEEeeCCCCcccEEE
Confidence 5799999998766442 234455444 444444443 57899999999999999999998763222 2222
Q ss_pred eCCCCcceeeeecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcC-------CC--ceE
Q 047915 81 VTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALP-------DA--KWV 151 (393)
Q Consensus 81 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~-------~~--~~~ 151 (393)
..... .-.++.+ ++.++.+++.. .+..++...++.. +.+... +.|. +...+.++.-. ++ +..
T Consensus 109 ~~~~~-~~~~~~W-l~~Tf~v~~~~--~t~~e~~~~~~~~--r~~~~~-~~p~--~~~~l~~v~~~~~~~~~~p~~~~~~ 179 (519)
T 3fot_A 109 ESPES-NESARDW-ARGCIHVQPTA--KSALDLWSEMEEG--RAAAND-NTPS--KSIELFLLSDVSTDSTPIPQDATVE 179 (519)
T ss_dssp ECCSS-HHHHHHH-HHHHEEEEECS--CCHHHHHHHHHHH--HHHTC--CCCC--CSCEEEEEESSSSTTSCCCTTCEEE
T ss_pred ecCCC-HHHHHHH-HHhcEEEeCCC--CCHHHHHHhhhhh--hccccc-CCCc--cceEEEEEeccccccccCCCCceEE
Confidence 11100 1111111 01122222211 1234443222111 001100 1112 34455554311 23 688
Q ss_pred EEEEeccccchHhhHHHHHHHHHHHHhcCCC----cc------ccccCCCChhHHhhcCCC-----cchhHHHHhhhhhh
Q 047915 152 VALRLHVAACDRTTAVSLLKELLLVLVSDDD----QE------QEGRGEVNLAIEALIPKG-----KAKKALWARGRDML 216 (393)
Q Consensus 152 l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~----~~------~~~~~~~~~~~~~~~~~~-----~~~~~~w~~~~~~~ 216 (393)
+++..||.++||+|+.+|+++|++.+.+... .. ..+...++|++++..... ..++..|.......
T Consensus 180 lv~~~~H~~~DG~g~~~f~~~ll~~L~~~~~~~~~~~~~~~~~g~E~~~L~P~~e~~~~~p~~~~~~e~~~~~~~~~~~~ 259 (519)
T 3fot_A 180 ILFHSNHLFWDGIGCRKFVGDLFRLVGSYIGRSDSREMKKIQWGQEIKNLSPPVVDSLKLDINTLGSEFDDKCTEYTSAL 259 (519)
T ss_dssp EEEEECGGGCCHHHHHHHHHHHHHHHTTSTTC-CGGGSCCCCTTTTGGGSCCCTGGGBSSCGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEeCceeEchHhHHHHHHHHHHHHHhhhccCCccCCCcCCCCcccccCCcCHHHHhCCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999953211 00 011224566677765432 11233333322111
Q ss_pred hcccccccccccCCcCCCCCCcccEEEEEeCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCC------CCceE
Q 047915 217 TYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSR---GIKLCGMLAAAGLIAAHNSDN------QRKYA 287 (393)
Q Consensus 217 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~t~~l~~~ck~~---gvT~~~~l~Aa~~~al~~~~g------~~~~~ 287 (393)
. ...+...+|+.. .+..+..+.+.|+.+.+++|++.||++ |+|++++++||++.++.++.. ...+.
T Consensus 260 ~---~~~~~~~~P~~~--~~~~~~~~~~~ls~~~t~~L~~~ck~~~~~g~Tvt~~l~Aa~~~al~~~~~~~~~~~~~~~~ 334 (519)
T 3fot_A 260 V---ANYKSRGMKFQP--GLALPRCVIHKLSADESIDIVKAVKTRLGPGFTISHLTQAAIVLALLDHLKPNDLSDDEVFI 334 (519)
T ss_dssp H---HHHHSCCSBCCC--CCCCEEEEEEECCHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHC----CCTTCCEE
T ss_pred h---cCCCcccCCCCC--CCCCcceEEEEcCHHHHHHHHHHHHhcCCCCeeHHHHHHHHHHHHHHhhcCCcccCCCccEE
Confidence 0 001122334322 234556788999999999999999999 999999999999999988542 14799
Q ss_pred EEeeccccccCCCCCCCCceeeEeeeccceeeC-C----CCCc--------HHHHHHHHHHHHHhhhccC
Q 047915 288 VATLTDCRSILEPPLSNHRFGFYHSAIMNTHLI-K----SGEK--------LGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 288 i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v-~----~~~~--------f~~la~~v~~~~~~~~~~~ 344 (393)
+.+|+|+|++++++.....+|.+++++++++.. . .... |+++++.+++.+....++.
T Consensus 335 ~~~pvnlR~~l~~~~~~n~~~~~~~~~~~~v~~i~~~~~~~~~~e~~~~~~~~~~ar~l~~~y~~~~~np 404 (519)
T 3fot_A 335 SPTSVDGRRWLREDIASNFYAMCQTAAVVRIENLKSITVSHKDEKELQVRALESACRNIKKSYRQWLENP 404 (519)
T ss_dssp EEEEEECGGGBCHHHHTSCCSCCEEEEEEEECCGGGGCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EEeeeeccccCCCcccccccceeeeeeeeEecCccccccccchhhhhhHhHHHHHHHHHHHHhhcccCCc
Confidence 999999999997643233568888877776532 1 1112 6888888888887766554
No 8
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=99.05 E-value=3.2e-08 Score=96.12 Aligned_cols=272 Identities=14% Similarity=0.101 Sum_probs=150.1
Q ss_pred hHHHHHHHHHHHhhcccccceeccC---CCCCceEeeCCCCcceeeeecccCccccccccccccchhHHHHHHHHhhccc
Q 047915 48 TSGLQDALNKLQSYHPILRSRLHTN---PSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNEN 124 (393)
Q Consensus 48 ~~~L~~A~~~l~~rhp~LR~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 124 (393)
.+.|++|+.+++..++-|.-|+... +|+......+.. .+.+...+.+.++..+.......... +. .+-
T Consensus 57 ~~~Lk~sLs~~L~~~~plAGRl~~~~~~~g~~~i~c~~~~--gv~fv~A~~~~~l~~l~~~~~~~~~~----~~-~l~-- 127 (453)
T 2xr7_A 57 IPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGN--SVSVIFSESDMDFNYLIGYHPRNTKD----FY-HFV-- 127 (453)
T ss_dssp HHHHHHHHHHHHTTSGGGGSCCEEESSTTCCCEEEEETTC--CCEEEEEECCSCHHHHTCSSCCCGGG----GG-GGS--
T ss_pred HHHHHHHHHHHhhhccccCeeEEccCCCCCCEEEEecCCC--ceEEEEEecCCCHHHhhccCCCChhh----hh-cCC--
Confidence 5789999999999999999999764 333433333222 22222222111111000000000000 00 000
Q ss_pred ccccccCCCC-----CCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCCccccccCCCChhHHh-h
Q 047915 125 AWCNLKCTST-----TDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEA-L 198 (393)
Q Consensus 125 p~~~~~~~~~-----~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~-~ 198 (393)
|...... .. .|++.+.+.+...+...|.+++||.++||.|+..|++.+.+....+........ ...|.++. .
T Consensus 128 p~~~~~~-~~~~~~~~pll~vQvT~f~cGG~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r~G~~~~~~~~-~~~P~~dr~~ 205 (453)
T 2xr7_A 128 PQLAEPK-DAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLAN-EFIPFYDRSV 205 (453)
T ss_dssp CCCCCCE-EETTEEECCCEEEEEEEETTTEEEEEEEECTTTCCSHHHHHHHHHHHHHHHTTTCGGGSCG-GGSCBCCCSS
T ss_pred CCCCCcc-cccccccCCeEEEEEEEccCCcEEEEEeeeeeeechhHHHHHHHHHHHHhhcCCCcccCCC-CCCCcccccc
Confidence 1100000 11 688877777765567899999999999999999999999988852321100000 00111111 1
Q ss_pred cCCCcchhHHHHhhhhhhhccccccccccc-CCcCCCCCCcccEEEEEeCHHHHHHHHHHHHhc-----CCCHHHHHHHH
Q 047915 199 IPKGKAKKALWARGRDMLTYSVNSLKSTNL-KFIDAKSPRSSQVVRLQLNKDDTERILLTCKSR-----GIKLCGMLAAA 272 (393)
Q Consensus 199 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l-p~~~~~~~~~~~~~~~~l~~~~t~~l~~~ck~~-----gvT~~~~l~Aa 272 (393)
+..... .. .... .+... .+ .+ +......+.......+.++++..++|++.|... .+|-+.++.|.
T Consensus 206 l~~p~~-~~--~~~~---~~~~~-~~--~~~~~~~~~~~~~~~~~~f~f~~~~i~~Lk~~a~~~~~~~~~~St~~~l~A~ 276 (453)
T 2xr7_A 206 IKDPNG-VG--MSIW---NEMKK-YK--HMMKMSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAY 276 (453)
T ss_dssp SCCSSC-HH--HHTT---TTGGG-CT--TTSCCSCCCCCCSCCCEEEEECHHHHHHHHHHHHHHSCCCSCCCHHHHHHHH
T ss_pred ccCCCC-cc--hHHH---Hhccc-cC--CccccccccCCCCceEEEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Confidence 110000 00 0000 00000 00 00 000000111122456899999999999999753 47888898886
Q ss_pred HHHHHHhcC-------CC-CceEEEeeccccccCCCCCCCCceeeEeeeccceeeCC---CCCcHHHHHHHHHHHHHh
Q 047915 273 GLIAAHNSD-------NQ-RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIK---SGEKLGDLAKKIYTAFVN 339 (393)
Q Consensus 273 ~~~al~~~~-------g~-~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~---~~~~f~~la~~v~~~~~~ 339 (393)
+-.++.+.. +. ....+..++|+|+++.+++....+|+.+........++ .+.++.++|+.|++.+.+
T Consensus 277 lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplP~~Y~GN~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~ 354 (453)
T 2xr7_A 277 VWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRK 354 (453)
T ss_dssp HHHHHHHHHHHTTCCCCTTSEEEEEEECCTTSCSSSCCCTTBCSCCCCEEEEEEEHHHHTSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccccccCCCCcceEEEEEecccccCCCCCCcccccceeeeeeeeeeHHHhcCcchHHHHHHHHHHHHHh
Confidence 665554332 22 57889999999999987777778888765443333332 347899999999999876
No 9
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=99.01 E-value=6.9e-08 Score=93.30 Aligned_cols=268 Identities=13% Similarity=0.079 Sum_probs=153.2
Q ss_pred CChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeeecccCccccccccccccchhHHHHHHHHhhcccc
Q 047915 46 PETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENA 125 (393)
Q Consensus 46 ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 125 (393)
...+.|++|+.+++..++-|.-|+..++++...+..++. .+.+-..+.+.+...+.... .... + +.+- |
T Consensus 56 ~~~~~Lk~sLs~~L~~f~plAGRl~~~~~g~~~i~c~~~--Gv~fv~A~~d~~l~~l~~~~--p~~~----~-~~l~--p 124 (439)
T 4g22_A 56 FDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGE--GVLFVEAESDGVVDDFGDFA--PTLE----L-RRLI--P 124 (439)
T ss_dssp TCHHHHHHHHHHHTTTTGGGGCEEEECTTSCEEEECCCC--CEEEEEEEESSCGGGGTTCC--CCGG----G-GGGS--C
T ss_pred cHHHHHHHHHHHHHhhccccceeeeeCCCCCEEEEECCC--CCEEEEEEcCCcHHHhcCCC--CCHH----H-HhcC--C
Confidence 347899999999999999999999876432222222222 22222222111111111000 0111 1 1110 1
Q ss_pred cccc-cCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCCccccccCCCChhHHh-hcCCC-
Q 047915 126 WCNL-KCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEA-LIPKG- 202 (393)
Q Consensus 126 ~~~~-~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~- 202 (393)
.... ......|++.+.+.+...+...|.+++||.++||.|...|++.+.+.+...+. . .+|.++. .+...
T Consensus 125 ~~~~~~~~~~~pll~vQvT~f~cGG~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~rg~~~-~------~~P~~dr~~l~~~~ 197 (439)
T 4g22_A 125 AVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV-T------LPPFIDRTLLRARD 197 (439)
T ss_dssp CCCTTSCTTSSCSEEEEEEECTTSCEEEEEEECTTTCCHHHHHHHHHHHHHHHTTCCC-S------SCCBCCGGGGCCCS
T ss_pred CCCcccccccCceeEEEEEEecCCCEEEEEEeeeccCcHHHHHHHHHHHHHHhCCCCC-C------CCCccccccccCCC
Confidence 1110 00034688888887776677899999999999999999999999999853221 1 1111111 11100
Q ss_pred cchhHHHHhhhhhhhcccccccccccCCcC-C--CCC-CcccEEEEEeCHHHHHHHHHHHHhc----CCCHHHHHHHHHH
Q 047915 203 KAKKALWARGRDMLTYSVNSLKSTNLKFID-A--KSP-RSSQVVRLQLNKDDTERILLTCKSR----GIKLCGMLAAAGL 274 (393)
Q Consensus 203 ~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~-~--~~~-~~~~~~~~~l~~~~t~~l~~~ck~~----gvT~~~~l~Aa~~ 274 (393)
.....+ +...|. +...++... + ..+ .......+.++++..++|++.|... .+|-+.++.|-+-
T Consensus 198 pp~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~~~~~~~~St~dal~A~iW 268 (439)
T 4g22_A 198 PPQPQF-----QHIEYQ----PPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVW 268 (439)
T ss_dssp SCCCSS-----CCGGGS----CCC---------------CEEEEEEEECHHHHHHHHHGGGGGGCCCCCCHHHHHHHHHH
T ss_pred CCCCCc-----Cccccc----CCCCCcccccccccCCcccceEEEEEECHHHHHHHHHHhhccCCCCCccHHHHHHHHHH
Confidence 000000 000000 000000000 0 001 1223456889999999999998654 3788899998766
Q ss_pred HHHHhcCC---CCceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCC--CCcHHHHHHHHHHHHHhh
Q 047915 275 IAAHNSDN---QRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKS--GEKLGDLAKKIYTAFVNS 340 (393)
Q Consensus 275 ~al~~~~g---~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~--~~~f~~la~~v~~~~~~~ 340 (393)
..+.+..+ .....+..++|+|++..|++....+|+.+........+++ +.++.++|+.|++.+.+.
T Consensus 269 r~~~rAr~~~~~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~el~~~~L~~~A~~Ir~ai~~~ 339 (439)
T 4g22_A 269 RCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARM 339 (439)
T ss_dssp HHHHHHTTCCTTCEEEEEEEEECTTTSSSCCCTTBCSCCEEEECCEEEHHHHHHSCHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCCCcEEEEEEEcccCCCCCCCCCCcccceeehhhcceEHHHHhhCcHHHHHHHHHHHHHhh
Confidence 66655443 2578899999999999877777788887765444443322 358999999999988764
No 10
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=98.99 E-value=9.3e-08 Score=92.85 Aligned_cols=272 Identities=13% Similarity=0.086 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHHhhcccccceec-cC--CCCCceEeeCCCCcceeeeecccCccccccccccccchhHHHHHHHHhhccc
Q 047915 48 TSGLQDALNKLQSYHPILRSRLH-TN--PSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNEN 124 (393)
Q Consensus 48 ~~~L~~A~~~l~~rhp~LR~~~~-~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 124 (393)
.+.|++|+.+++..++-|.-|+. .+ +|.......+.. .+.+...+.+.++..+.+........+ .. +-
T Consensus 62 ~~~Lk~sLs~~L~~~~plAGRl~~~~~~~g~~~i~c~~~~--gv~fv~A~~~~~l~~l~~~~~~~~~~~----~~-l~-- 132 (454)
T 2e1v_A 62 VPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGD--SVAVTFAECNLDLNELTGNHPRNCDKF----YD-LV-- 132 (454)
T ss_dssp HHHHHHHHHHHHTTCGGGGSEEEECSSSSSCCEEEECTTC--CEEEEEEEECSCGGGTSSSSCEEGGGG----GG-GS--
T ss_pred HHHHHHHHHHHhhhccccceeeeeccCCCCCEEEEECCCC--cEEEEEEEeCCCHHHhcCCCCCcchhh----hc-CC--
Confidence 57899999999999999999998 43 333433333222 223322221111111111000000111 01 10
Q ss_pred ccccc-cCC---CCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCC-cc-ccccCCCChhHHhh
Q 047915 125 AWCNL-KCT---STTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDD-QE-QEGRGEVNLAIEAL 198 (393)
Q Consensus 125 p~~~~-~~~---~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~-~~-~~~~~~~~~~~~~~ 198 (393)
|.... ... ...|++.+.+.+...+...|.+++||.++||.|+..|++.+.+.+..+.. .. .... ..|.++..
T Consensus 133 p~~~~~~~~~~~~~~pll~vQvT~f~cgG~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r~g~~~~~~~~~~--~~P~~dr~ 210 (454)
T 2e1v_A 133 PILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANG--TRPLYDRI 210 (454)
T ss_dssp CCCCCCEECSSCEEEECEEEEEEEETTTEEEEEEEECGGGCCHHHHHHHHHHHHHHHHTTSCCHHHHHHS--CCCBCCCC
T ss_pred CCCCCcccccccccCceEEEEEEEecCCcEEEEEEeeeeecchhHHHHHHHHHHHHhccCCCccccCCCC--CCCccccc
Confidence 11100 000 11278777776665567899999999999999999999999998853421 10 0000 01111111
Q ss_pred cCCCcchhHHHHhhhhh---hhcccccccccccCCcCCCCCCcccEEEEEeCHHHHHHHHHHHHhc-----CCCHHHHHH
Q 047915 199 IPKGKAKKALWARGRDM---LTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSR-----GIKLCGMLA 270 (393)
Q Consensus 199 ~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~t~~l~~~ck~~-----gvT~~~~l~ 270 (393)
+....-...++...... ..|. +..++ .+.......+.++++..++|++.|... .+|-+.++.
T Consensus 211 l~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~~~St~d~l~ 280 (454)
T 2e1v_A 211 IKYPMLDEAYLKRAKVESFNEDYV-----TQSLA-----GPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVAC 280 (454)
T ss_dssp CCCHHHHHHHHHHTTCTTHHHHCC-----CCCCC-----CCCCEEEEEEEECHHHHHHHHHHHHHHCTTCSCCCHHHHHH
T ss_pred CCCCCcchHHHHhhhccccccccC-----cccCC-----CCCCceEEEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHH
Confidence 11000000111100000 0000 00111 111222456899999999999999753 478889998
Q ss_pred HHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCC---CCcHHHHHHHHHHHHHhh
Q 047915 271 AAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKS---GEKLGDLAKKIYTAFVNS 340 (393)
Q Consensus 271 Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~---~~~f~~la~~v~~~~~~~ 340 (393)
|.+-..+.+....+...+..++|+|++..+++....+|+.+........+.+ +.++.++|+.|++.+.+.
T Consensus 281 A~lWr~~~~Ar~~~~~~l~~~vd~R~rl~pplP~~Y~GN~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~ 353 (454)
T 2e1v_A 281 AYIWSCIAKSRNDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKT 353 (454)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEEECGGGSSSCCCTTBCSCCEEEEEEEEEGGGTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCceEEEEEecchhccCCCCCcccccceeeeEEeecchhhccccccHHHHHHHHHHHHHhh
Confidence 8776666544344678899999999999877777788887765544444432 357999999999998876
No 11
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=98.94 E-value=2.7e-07 Score=88.66 Aligned_cols=252 Identities=11% Similarity=0.105 Sum_probs=149.4
Q ss_pred ChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeeecccCcccc-ccccccccchhHHHHHHHHhhcccc
Q 047915 47 ETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSK-ILESSERFSIAPLQLILEHELNENA 125 (393)
Q Consensus 47 d~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~p 125 (393)
..+.|++|+.+++..++-|.-|+.. +......+ . .+.+-..+.+.+.. +..... .... ++..+ |
T Consensus 59 ~~~~Lk~sLs~~L~~~~plAGRl~~---~~~i~c~~-~--Gv~fv~A~~d~~l~~~~~~~p--~~~~----~~~l~---p 123 (421)
T 2bgh_A 59 TSQHLKQSLSKVLTHFYPLAGRINV---NSSVDCND-S--GVPFVEARVQAQLSQAIQNVV--ELEK----LDQYL---P 123 (421)
T ss_dssp HHHHHHHHHHHHTTTSGGGGSEEET---TTEEECCC-C--CEEEEEEEESSCHHHHHSCCS--SGGG----GGGGS---S
T ss_pred HHHHHHHHHHHHhhhcchhccccCC---CcEEEEcC-C--ceEEEEEEEcCCHHHHhccCC--ChHH----HHhcC---C
Confidence 3689999999999999999999963 12221111 1 11111111000000 000000 0000 11111 2
Q ss_pred cccc-c--C-CCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCCccccccCCCChhHHhhcCC
Q 047915 126 WCNL-K--C-TSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEALIPK 201 (393)
Q Consensus 126 ~~~~-~--~-~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 201 (393)
.... + . ....|++.+.+.+..-+...|.+.+||.++||.|+..|++.+.+....... . ..|.++
T Consensus 124 ~~~~~~~~~~~~~~pll~vQvt~f~cgG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~~~-~------~~P~~d----- 191 (421)
T 2bgh_A 124 SAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETE-I------VLPNFD----- 191 (421)
T ss_dssp SCSSSSSSSCCCTTCSEEEEEEECTTSCEEEEEEEETTTCCHHHHHHHHHHHHHHHTTCSC-C------CCCBCS-----
T ss_pred CCCCccccccccCCceEEEEEEEEcCCCEEEEEEeeEEechHHHHHHHHHHHHHHhcCCCC-C------CCCccc-----
Confidence 2210 0 0 135788888887766567899999999999999999999998888743211 1 111110
Q ss_pred CcchhHHHHhhhhhhhcccccccccccCCcCCCCCCcccEEEEEeCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH
Q 047915 202 GKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKS----RGIKLCGMLAAAGLIAA 277 (393)
Q Consensus 202 ~~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~t~~l~~~ck~----~gvT~~~~l~Aa~~~al 277 (393)
+ . ..+. .. +...|......+.......+.++++..++|++.|.. ..+|-+.++.|.+-..+
T Consensus 192 ----r-~--~~l~------p~--~~~~~~~~~~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~~St~d~l~A~iW~~~ 256 (421)
T 2bgh_A 192 ----L-A--ARHF------PP--VDNTPSPELVPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHV 256 (421)
T ss_dssp ----H-H--HHHS------CC--CTTCCCCCCCCCSSEEEEEEEECHHHHHHHHHHTC-----CCCCHHHHHHHHHHHHH
T ss_pred ----c-c--cccC------CC--cccCCCCccCCccceEEEEEEECHHHHHHHHHHhhccCCCCCCchhHhHHHHHHHHH
Confidence 0 0 0000 00 000000000011222345688999999999999865 35788899988665555
Q ss_pred HhcC----CC-CceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhh
Q 047915 278 HNSD----NQ-RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNS 340 (393)
Q Consensus 278 ~~~~----g~-~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~ 340 (393)
.+.. +. ....+..++|+|++..+++....+|+.+........++.+.++.++|+.|++.+.+.
T Consensus 257 ~~Ar~~~~~~~~~~~l~~~vd~R~rl~pplP~~y~GN~~~~~~~~~~~~~~~~l~~~a~~ir~ai~~~ 324 (421)
T 2bgh_A 257 IDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKT 324 (421)
T ss_dssp HHHHHHHSCCCSCEEEEEEEESGGGSSSCCCTTBCSCCEEEEEEEECTTCCCCGGGGHHHHHHHTCCC
T ss_pred HHHhcccCCCCCceEEEEEecCccccCCCCCCCccceEEEEEEEEecccccccHHHHHHHHHHHHHHH
Confidence 4432 23 578899999999999877777788987776555555656788999999999988653
No 12
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=98.44 E-value=1.6e-05 Score=77.04 Aligned_cols=193 Identities=12% Similarity=0.078 Sum_probs=108.8
Q ss_pred CCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHhcCCCccccccCCCChhHHh--hcCCCcchhHHHHh
Q 047915 134 TTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEA--LIPKGKAKKALWAR 211 (393)
Q Consensus 134 ~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~w~~ 211 (393)
..|++.+.+... .+...|.+++||.++||.|+..|++.+.+.+...+...... ..|.++. +.+....... ..
T Consensus 133 ~~pll~vQvT~~-~GG~~lg~~~~H~v~Dg~g~~~Fl~awa~~~rg~~~~~~~~---~~p~~dr~~~~p~~~~~~p--~~ 206 (451)
T 2rkv_A 133 PKPVILLQLNFI-KGGLILTVNGQHGAMDMVGQDAVIRLLSKACRNDPFTEEEM---TAMNLDRKTIVPYLENYTI--GP 206 (451)
T ss_dssp CCBSEEEEEEEE-BTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCCCHHHH---HHTTCCSTTSSCCCTTCCC--CG
T ss_pred CCceEEEEEEEe-cCceeeeeeehhccccHHHHHHHHHHHHHHhcCCCCCcccc---ccccCchhhccccccccCC--Cc
Confidence 367776555432 36789999999999999999999999999885322100000 0000000 0010000000 00
Q ss_pred hhhhhhcccccccccccCCcCCCCCCcccEEEEEeCHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHhcC-C--
Q 047915 212 GRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSR------GIKLCGMLAAAGLIAAHNSD-N-- 282 (393)
Q Consensus 212 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~t~~l~~~ck~~------gvT~~~~l~Aa~~~al~~~~-g-- 282 (393)
.++...+. . .+. . ..............+.++++..++|++.|... .+|-+.++.|.+-..+.+.. +
T Consensus 207 ~~~~~~~~--~-~~~-~-~~~~~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~~~~St~d~l~A~~Wr~~~~Ar~~~~ 281 (451)
T 2rkv_A 207 EVDHQIVK--A-DVA-G-GDAVLTPVSASWAFFTFSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERI 281 (451)
T ss_dssp GGTTCBCC--T-TSC-C--------CCEEEEEEEECHHHHHHHHHHHHTTCCTTCSCCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccccccC--C-CCC-C-CCCCCCCCCceEEEEEECHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHhccC
Confidence 00000000 0 000 0 00000111223456889999999999999754 37888899887666554432 2
Q ss_pred -C-CceEEEeeccccccCCCCCCCCceeeEeeeccceeeCCC--CCcHHHHHHHHHHHHHh
Q 047915 283 -Q-RKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKS--GEKLGDLAKKIYTAFVN 339 (393)
Q Consensus 283 -~-~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~v~~--~~~f~~la~~v~~~~~~ 339 (393)
. ....+..++|+|++... +...+|+.+........+.+ +.++.++|+.|++.+.+
T Consensus 282 ~~~~~~~l~~~vd~R~rl~l--P~~y~GN~~~~~~~~~~~~el~~~~L~~~a~~ir~ai~~ 340 (451)
T 2rkv_A 282 DGSAPTEFCRAVDARPAMGV--SNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSELDP 340 (451)
T ss_dssp CTTSEEEEEEEEECHHHHTC--CTTCCSCCEEEEEEEEEHHHHHHSCHHHHHHHHHTTCCH
T ss_pred CCCCceEEEEEecccccCCC--CCCCcccceeeecccCcHHHhccchHHHHHHHHHHHhcc
Confidence 2 57889999999998763 34577876654443333322 46788899988887754
No 13
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=92.89 E-value=0.41 Score=30.66 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=36.4
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~ 280 (393)
..+.+.|+.++...|..+|+..|+|.+.++.-|+..++.+.
T Consensus 10 ~~i~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~ 50 (55)
T 2k9i_A 10 IKLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNH 50 (55)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999887777654
No 14
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=92.03 E-value=0.49 Score=32.05 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=36.5
Q ss_pred ccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047915 239 SQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 239 ~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~ 279 (393)
.....++++.++-.+|...|+++|.|+|+.+..++..++.+
T Consensus 19 ~~kf~LRlP~eL~~~L~~~A~~~grSlNaeIv~~Le~sl~~ 59 (69)
T 3qoq_A 19 ADKFVVRLPEGMREQIAEVARSHHRSMNSEIIARLEQSLLQ 59 (69)
T ss_dssp SEEEEEECCTTHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999888763
No 15
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=91.48 E-value=0.64 Score=29.71 Aligned_cols=39 Identities=8% Similarity=0.073 Sum_probs=34.7
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~ 279 (393)
...+++++++-.+|...++.+|.|+|..+..++..++.+
T Consensus 9 ~~~lRlp~eL~~~l~~~A~~~grS~N~~i~~~L~~~l~~ 47 (53)
T 1baz_A 9 QVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKK 47 (53)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred eeEEECCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 456889999999999999999999999999998877753
No 16
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=90.35 E-value=0.7 Score=29.16 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=31.6
Q ss_pred cccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 047915 238 SSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAG 273 (393)
Q Consensus 238 ~~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~ 273 (393)
.+..+.+.+++++...|.+.|+..|.|+..++..++
T Consensus 14 r~~~i~vRlt~eE~~~l~~~A~~~g~s~SeyiR~~~ 49 (51)
T 2ba3_A 14 KTVVRTLRFSPVEDETIRKKAEDSGLTVSAYIRNAA 49 (51)
T ss_dssp CSEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CceeEEEEECHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445678999999999999999999999999887664
No 17
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=89.61 E-value=0.92 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=33.6
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAH 278 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~ 278 (393)
.+.+.|+.+...+|.+.|++.|.|-+.++-.|+...+.
T Consensus 4 ritv~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 4 RLTITLSESVLENLEKMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred eEEEecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999888766664
No 18
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=88.26 E-value=0.91 Score=31.44 Aligned_cols=43 Identities=9% Similarity=0.193 Sum_probs=36.6
Q ss_pred CcccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047915 237 RSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 237 ~~~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~ 279 (393)
......++.++++.-.+|+..|...|+|++.++.-++-.++.+
T Consensus 32 ~~~~Rlti~i~~~lh~rlK~~Aa~~g~Smsdvvreli~~~L~~ 74 (76)
T 1p94_A 32 GKIKRVNVNFDEEKHTRFKAACARKGTSITDVVNQLVDNWLKE 74 (76)
T ss_dssp TCEEECCEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCceeEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3445667899999999999999999999999999888776653
No 19
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=87.26 E-value=12 Score=32.47 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=25.9
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
.+.+++||-++||.-+..|+++|-+++.
T Consensus 206 ~lsLs~DHRviDGa~aa~Fl~~lk~~Le 233 (250)
T 3l60_A 206 TLTCVFDHRVVDGAQVAQFMCELRDLIE 233 (250)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccccCHHHHHHHHHHHHHHHh
Confidence 4779999999999999999999999983
No 20
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=85.56 E-value=3.2 Score=26.74 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=35.0
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~ 279 (393)
....+.+++++-.++..+|..+|.|++.++.-|+-.++.+
T Consensus 14 g~~~vrId~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~ 53 (56)
T 2kel_A 14 AVFGIYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred eeEEEEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999888776654
No 21
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=85.11 E-value=2.6 Score=31.75 Aligned_cols=39 Identities=5% Similarity=0.045 Sum_probs=35.5
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~ 279 (393)
...+++++++-.+|...+++.|.|+|..+..++..++..
T Consensus 20 kf~LRLP~eLh~~La~~Ak~eGrSLN~eIv~~Le~sl~~ 58 (120)
T 1u9p_A 20 QFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKK 58 (120)
T ss_dssp EEEEECCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred eeEEeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 567899999999999999999999999999999887764
No 22
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=84.87 E-value=1.5 Score=29.24 Aligned_cols=38 Identities=3% Similarity=-0.023 Sum_probs=34.1
Q ss_pred EEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047915 243 RLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~ 280 (393)
.+++++++-.+|...+++.|.|+|..+..++..++...
T Consensus 11 ~lRlp~eLh~~l~~~A~~~GrSlN~~Iv~~L~~~l~~~ 48 (64)
T 1nla_A 11 LNRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKE 48 (64)
T ss_dssp GGSSCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 36799999999999999999999999999998887654
No 23
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=84.63 E-value=3.2 Score=26.02 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=35.8
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~ 280 (393)
..+.+.|+.+...+|.++|+..|.|.+.++.-|+..++.+.
T Consensus 4 ~~~sirl~~~l~~~l~~lA~~~~rs~s~lir~Ai~~yl~~~ 44 (52)
T 2gpe_A 4 TTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQL 44 (52)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999998887777643
No 24
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=81.31 E-value=6.4 Score=25.48 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=36.3
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~ 280 (393)
....++|+.++..+|.+++++.|.|.+-++--|+..++.+.
T Consensus 4 ~~~svrL~~el~~rL~~lA~~~~rs~s~lireAi~~yl~~~ 44 (58)
T 2ay0_A 4 TTMGVMLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQL 44 (58)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred cceEeECCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999998888777654
No 25
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=76.91 E-value=3.5 Score=28.41 Aligned_cols=33 Identities=3% Similarity=0.041 Sum_probs=29.4
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAG 273 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~ 273 (393)
..++.++.+.=.+|++.++.+|+|++.++.-.+
T Consensus 3 rLTIrLpd~qH~rLKalAa~qG~SInqli~E~l 35 (83)
T 2an7_A 3 RLTIDMTDQQHQSLKALAALQGKTIKQYALERL 35 (83)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTSCHHHHHHHHT
T ss_pred eeeEeCCHHHHHHHHHHHHHcCCcHHHHHHHHc
Confidence 467899999999999999999999999987653
No 26
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=76.28 E-value=7.6 Score=26.99 Aligned_cols=40 Identities=15% Similarity=0.035 Sum_probs=35.9
Q ss_pred EEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 047915 241 VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~ 280 (393)
.+.++|+.++..+|.+.|++.|.|-+.++.-|+..++.+.
T Consensus 11 risI~Lpdel~~~Ld~la~~~g~srselireAi~~yl~~~ 50 (80)
T 2k5j_A 11 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQ 50 (80)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 5779999999999999999999999999998887777654
No 27
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=75.75 E-value=4.3 Score=27.99 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=34.0
Q ss_pred EEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 047915 242 VRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 242 ~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~ 279 (393)
..+++++++-.+|...++.+|.|+|..+..++-.++.+
T Consensus 7 f~lRi~~eLh~~L~~~A~~~grSlN~~I~~~L~~al~~ 44 (76)
T 1mnt_A 7 FNFRMPMEVREKLKFRAEANGRSMNSELLQIVQDALSK 44 (76)
T ss_dssp CEEECCHHHHHHHHHTHHHHTSCTHHHHHHHHHHHHHC
T ss_pred eeeeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 45779999999999999999999999999998877753
No 28
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=75.73 E-value=2.2 Score=36.16 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=25.8
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
.|.+++||-++||.-+..|+++|-+++.
T Consensus 182 ~lsls~DHRvvDG~~aa~Fl~~lk~~le 209 (213)
T 3cla_A 182 PLSVQVHHAVCDGFHVARFINRLQELCN 209 (213)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcccccChHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998883
No 29
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=74.19 E-value=2.4 Score=36.02 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=24.4
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHH
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVL 177 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y 177 (393)
.|.+++||-++||.-+..|+++|-+++
T Consensus 190 ~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 190 PIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecchhhChHHHHHHHHHHHHHh
Confidence 578999999999999999999998765
No 30
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=72.89 E-value=2.7 Score=35.77 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=25.9
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
.|.+++||-++||.-+..|+++|-+++.
T Consensus 186 ~lsls~DHRvvDG~~aa~Fl~~lk~~le 213 (219)
T 1q23_A 186 PLAIQVHHAVCDGFHVGRMLNELQQYCD 213 (219)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEchhhChHHHHHHHHHHHHHHh
Confidence 6789999999999999999999998884
No 31
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=70.46 E-value=3.8 Score=34.90 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=26.0
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
.+.+++||-++||.-+..|+++|-+++.
T Consensus 188 ~lsls~DHRviDGa~aa~Fl~~l~~~le 215 (224)
T 3rqc_A 188 YLSLSCDHRLIDGAVATRFIVDLKKVIE 215 (224)
T ss_dssp CEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEEEeccceecHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999993
No 32
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=67.92 E-value=4.6 Score=34.64 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=26.0
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
.+.+++||-++||.-+..|+++|-+++.
T Consensus 197 ~lsls~DHRviDGa~aa~Fl~~lk~~le 224 (233)
T 1scz_A 197 YLALSYDHRLIDGRESVGFLVTIKELLE 224 (233)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcceeechHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999883
No 33
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=66.88 E-value=4.3 Score=35.05 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=26.1
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
.+.+++||-++||.-+..|+++|-+++.
T Consensus 209 ~lsls~DHRviDGa~aa~Fl~~lk~~le 236 (243)
T 1dpb_A 209 PLSLSYDCRVINGAAAARFTKRLGDLLA 236 (243)
T ss_dssp EEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEECcccccHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999883
No 34
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=66.02 E-value=4 Score=35.20 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=26.5
Q ss_pred eEEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 150 WVVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 150 ~~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
-.+.+++||-++||.-+..|+++|-+++.
T Consensus 204 m~lsls~DHRviDGa~aa~Fl~~lk~~le 232 (239)
T 3b8k_A 204 MSVTLSCDHRVVDGAVGAQWLAEFRKYLE 232 (239)
T ss_dssp EEEEECCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999883
No 35
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=64.87 E-value=47 Score=28.34 Aligned_cols=87 Identities=8% Similarity=0.082 Sum_probs=55.8
Q ss_pred EEEeCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHhcC-------CC-----CceEEEeeccccccCCCCCCCC
Q 047915 243 RLQLNKDDTERILLTCKS-----RGIKLCGMLAAAGLIAAHNSD-------NQ-----RKYAVATLTDCRSILEPPLSNH 305 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~-----~gvT~~~~l~Aa~~~al~~~~-------g~-----~~~~i~~pv~~R~~~~~~~~~~ 305 (393)
...++-....++++..|+ .++|++.+++-|...++.++- ++ +.+.++..|+.- +
T Consensus 41 ~~evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igvAV~~~--------~- 111 (239)
T 3b8k_A 41 SIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTP--------A- 111 (239)
T ss_dssp EEEECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHCCCSCTTSCCCSSSCSCCCCEEECEECS--------S-
T ss_pred EEEEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEeCceeEEEEEEcC--------C-
Confidence 456666666666666655 699999999999999998653 11 234455444321 1
Q ss_pred ceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 306 RFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 306 ~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
|.+ +|+.... ...+|.++++++++...++.+.+
T Consensus 112 --GL~---vPvi~~a-~~~~l~~i~~~~~~l~~~ar~~k 144 (239)
T 3b8k_A 112 --GLI---TPIVFNA-HIKGVETIANDVVSLATKAREGK 144 (239)
T ss_dssp --CEE---CCEECCS-SCCCHHHHHHHHHHHHHHHHTTC
T ss_pred --cEE---EEEEcCC-CCCCHHHHHHHHHHHHHHHHcCC
Confidence 111 2333233 35799999999999888776554
No 36
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=64.13 E-value=5.7 Score=34.72 Aligned_cols=28 Identities=14% Similarity=-0.047 Sum_probs=26.0
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
.|.+++||-++||.-+..|+++|-+++.
T Consensus 225 ~lsls~DHRviDGa~aa~Fl~~lk~~Le 252 (262)
T 2ii3_A 225 NVSWSADHRIIDGATVSRFSNLWKSYLE 252 (262)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEECcceecHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999883
No 37
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=61.99 E-value=55 Score=27.34 Aligned_cols=76 Identities=5% Similarity=-0.023 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-------CC-----CceEEEeec-cccccCCCCCCCCceeeEeeecccee
Q 047915 252 ERILLTCKSRGIKLCGMLAAAGLIAAHNSD-------NQ-----RKYAVATLT-DCRSILEPPLSNHRFGFYHSAIMNTH 318 (393)
Q Consensus 252 ~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~-------g~-----~~~~i~~pv-~~R~~~~~~~~~~~~G~~~~~~~~~~ 318 (393)
.++.+.+|+.++|++.+++=|.+.|+.++- ++ +.+.++.+| +.. + |.++ |+..
T Consensus 37 t~l~~~rk~~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t~--------~---GL~v---pvi~ 102 (213)
T 3cla_A 37 TTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQE--------T---ETFS---ALSC 102 (213)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEETT--------T---TEEE---EEEC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeCC--------C---ceEE---EEEe
Confidence 445566788999999999999999997653 22 345555555 421 1 2221 2222
Q ss_pred eCCCCCcHHHHHHHHHHHHHhhhcc
Q 047915 319 LIKSGEKLGDLAKKIYTAFVNSKHC 343 (393)
Q Consensus 319 ~v~~~~~f~~la~~v~~~~~~~~~~ 343 (393)
. ...++.++++++++...++.+.
T Consensus 103 ~--~~~~~~~i~~~~~~l~~~ar~~ 125 (213)
T 3cla_A 103 P--YSSDIDQFMVNYLSVMERYKSD 125 (213)
T ss_dssp C--CCSSHHHHHHHHHHHHHHHTTC
T ss_pred c--CCCCHHHHHHHHHHHHHHHhhc
Confidence 2 2368999999999888777653
No 38
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=61.72 E-value=50 Score=27.71 Aligned_cols=76 Identities=5% Similarity=-0.110 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-------CC-----CceEEEeec-cccccCCCCCCCCceeeEeeecccee
Q 047915 252 ERILLTCKSRGIKLCGMLAAAGLIAAHNSD-------NQ-----RKYAVATLT-DCRSILEPPLSNHRFGFYHSAIMNTH 318 (393)
Q Consensus 252 ~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~-------g~-----~~~~i~~pv-~~R~~~~~~~~~~~~G~~~~~~~~~~ 318 (393)
.+|.+.+|+.++|++.+++=|...|+.++- ++ +.+.++.+| +.. + |.++ |+..
T Consensus 42 t~l~~~rk~~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAV~~t~--------~---GL~~---pvi~ 107 (219)
T 1q23_A 42 TAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQ--------T---ETFS---SLWS 107 (219)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEETT--------T---TEEE---EEEC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEecccCeEEEEEecC--------C---cEEE---EEEe
Confidence 445566688999999999999999997653 22 345555555 421 1 1121 2222
Q ss_pred eCCCCCcHHHHHHHHHHHHHhhhcc
Q 047915 319 LIKSGEKLGDLAKKIYTAFVNSKHC 343 (393)
Q Consensus 319 ~v~~~~~f~~la~~v~~~~~~~~~~ 343 (393)
. ...++.++++++++...++.+.
T Consensus 108 ~--~~~~l~~i~~~~~~l~~~ar~~ 130 (219)
T 1q23_A 108 E--YHDDFRQFLHIYSQDVACYGEN 130 (219)
T ss_dssp C--CCSSHHHHHHHHHHHHHHHTTC
T ss_pred c--CCCCHHHHHHHHHHHHHHHHcc
Confidence 2 2358999999998888776554
No 39
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=60.51 E-value=45 Score=28.31 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=53.5
Q ss_pred EEEeCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcC-------CC-----CceEEEeeccccccCCCCCC
Q 047915 243 RLQLNKDDTERILLTCKS-------RGIKLCGMLAAAGLIAAHNSD-------NQ-----RKYAVATLTDCRSILEPPLS 303 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~-------~gvT~~~~l~Aa~~~al~~~~-------g~-----~~~~i~~pv~~R~~~~~~~~ 303 (393)
...++-....++++..|+ .++|++.++.-|...++.++- |+ +.+.++.+++..
T Consensus 33 ~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~~~~~i~~~~~v~igiAV~~~-------- 104 (233)
T 1scz_A 33 FNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP-------- 104 (233)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCEEETTEEECCSSCCEEECEEET--------
T ss_pred EEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEEEeCCEEEEeCceeEEEEEEcC--------
Confidence 345665666666555554 689999999999999998764 11 233344433311
Q ss_pred CCceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 304 NHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 304 ~~~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+ |.+ +|+...+ ...+|.++++++++...++.+.+
T Consensus 105 ~---GL~---vPvi~~a-~~~~l~~i~~~~~~l~~~ar~~k 138 (233)
T 1scz_A 105 R---GLV---TPVLRDV-DTLGMADIEKKIKELAVKGRDGK 138 (233)
T ss_dssp T---EEE---CCEETTG-GGCCHHHHHHHHHHHHHHTTTTC
T ss_pred C---cEE---EEEEcCC-CCCCHHHHHHHHHHHHHHHHcCC
Confidence 1 221 2322222 35799999999999888776543
No 40
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=57.71 E-value=9.1 Score=33.27 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=26.2
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
.|.+++||-++||.-+..|+++|-+++.
T Consensus 211 ~lsLs~DHRviDGa~aa~Fl~~lk~~Le 238 (256)
T 3mae_A 211 NLCLSIDHRILDGLLAGKFLQAIKANVE 238 (256)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEccccccHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999999994
No 41
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=57.01 E-value=72 Score=27.50 Aligned_cols=87 Identities=8% Similarity=0.070 Sum_probs=53.4
Q ss_pred EEEeCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcC-------CC-----CceEEEeeccccccCCCCCC
Q 047915 243 RLQLNKDDTERILLTCKS-------RGIKLCGMLAAAGLIAAHNSD-------NQ-----RKYAVATLTDCRSILEPPLS 303 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~-------~gvT~~~~l~Aa~~~al~~~~-------g~-----~~~~i~~pv~~R~~~~~~~~ 303 (393)
...++-....++++..|+ .++|++.+++-|...++.++- +. +.+.++++|+.-
T Consensus 47 ~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~i~~~~~vnigiAV~t~-------- 118 (256)
T 3mae_A 47 MVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAG-------- 118 (256)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTSEEEETTEEEECSSCCEEECCCCT--------
T ss_pred EEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhhhEEecCEEEEcCcEEEEeEEEcC--------
Confidence 345555566666554442 468999999999999998764 11 233444444321
Q ss_pred CCceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 304 NHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 304 ~~~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+ |.+ +|+. .-....+|.++++++++....+.+.+
T Consensus 119 ~---GL~---vPvi-~~ad~~sl~ei~~~i~~l~~~Ar~gk 152 (256)
T 3mae_A 119 D---LLY---VPVI-KNADEKSIKGIAREISELAGKARNGK 152 (256)
T ss_dssp T---SCC---CCEE-TTGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred C---ceE---EEEE-cCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 211 1322 22245799999999999887776543
No 42
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=56.47 E-value=55 Score=27.56 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=53.1
Q ss_pred EEEeCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhcC-------C---C----CceEEEeeccccccCCCCCCCCc
Q 047915 243 RLQLNKDDTERILLTCKS--RGIKLCGMLAAAGLIAAHNSD-------N---Q----RKYAVATLTDCRSILEPPLSNHR 306 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~--~gvT~~~~l~Aa~~~al~~~~-------g---~----~~~~i~~pv~~R~~~~~~~~~~~ 306 (393)
...++-....++++..|+ .++|++.+++-|...++.++- + + +.+.++.+++.- +
T Consensus 35 ~~evDvt~l~~~r~~~k~~g~kls~~~~~ikA~~~Al~~~P~~N~~~~~~~~~i~~~~~v~igiAV~~~--------~-- 104 (224)
T 3rqc_A 35 MEEVDVTSMVSILDSAKARNRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTP--------D-- 104 (224)
T ss_dssp EECCBTHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHSGGGSBBCCSSTTCCCEECSCCEEEEEECS--------S--
T ss_pred EEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHHhheEEeCCCCEEEEeCccceEeEEEcC--------C--
Confidence 345665556666665655 467999999999999997753 1 1 233344444311 1
Q ss_pred eeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 307 FGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 307 ~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
|.+ +|+. .-....+|.++++++++...++.+.+
T Consensus 105 -GL~---vPvi-~~a~~~sl~~i~~~~~~l~~~ar~~~ 137 (224)
T 3rqc_A 105 -GLN---VFVI-KDADRKSMVEISAEISDKASRARENK 137 (224)
T ss_dssp -CEE---EEEE-SCGGGSCHHHHHHHHHHHHHHHTTTC
T ss_pred -ceE---EeEE-CCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 211 1322 22345799999999999887776543
No 43
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=55.72 E-value=74 Score=26.63 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--------CC-----CceEEEeec-cccccCCCCCCCCceeeEeeeccce
Q 047915 252 ERILLTCKSRGIKLCGMLAAAGLIAAHNSD--------NQ-----RKYAVATLT-DCRSILEPPLSNHRFGFYHSAIMNT 317 (393)
Q Consensus 252 ~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~--------g~-----~~~~i~~pv-~~R~~~~~~~~~~~~G~~~~~~~~~ 317 (393)
.++.+.+|+.++|++.+++-|.+.|+.++- ++ +.+.++++| +.. +..+ + |+.
T Consensus 39 t~l~~~rk~~~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~t~--------~GL~---~---pv~ 104 (217)
T 2i9d_A 39 GGARQRAKAAGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKIKE--------NGKF---F---TTR 104 (217)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEECST--------TSCE---E---EEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEecC--------CceE---e---EEE
Confidence 445566788999999999999999997542 22 356666666 432 1122 1 222
Q ss_pred eeCCCCCcHHHHHHHHHHHHHhhhcc
Q 047915 318 HLIKSGEKLGDLAKKIYTAFVNSKHC 343 (393)
Q Consensus 318 ~~v~~~~~f~~la~~v~~~~~~~~~~ 343 (393)
+.. ..++.++++++++...++.+.
T Consensus 105 ~~~--~~~~~~i~~~~~~l~~~ar~~ 128 (217)
T 2i9d_A 105 FPY--HNDFDTFYQEARLIIDAIPED 128 (217)
T ss_dssp ECC--CSSHHHHHHHHHHHHHHCCSS
T ss_pred ecC--CCCHHHHHHHHHHHHHHHHhc
Confidence 222 347999999998888776553
No 44
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=55.54 E-value=26 Score=24.09 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=30.5
Q ss_pred EEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 047915 244 LQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAH 278 (393)
Q Consensus 244 ~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~ 278 (393)
..++.+...+|+..++++|.|++..+...+..++.
T Consensus 6 Rnlpd~~~~~Lk~rAa~~GrSle~e~r~iL~~a~~ 40 (77)
T 2bsq_E 6 RNLSEATHNAIKFRARAAGRSTEAEIRLILDNIAK 40 (77)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 34999999999999999999999988877776665
No 45
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=50.00 E-value=43 Score=23.07 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=30.5
Q ss_pred EEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047915 242 VRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAA 277 (393)
Q Consensus 242 ~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al 277 (393)
+.++++.+.-+...+.|++.|.|++.++-.-+-...
T Consensus 4 i~~RiD~~lK~~a~~v~~~lGl~~s~Ai~~fl~~v~ 39 (79)
T 4fxe_A 4 INLRIDDELKARSYAALEKMGVTPSEALRLMLEYIA 39 (79)
T ss_dssp EEEECCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999998886554443
No 46
>1y9b_A Conserved hypothetical protein; MCSG, structural genomics, conserved hypoth protein, PSI, protein structure initiative; 2.20A {Vibrio cholerae o1 biovar eltor} SCOP: a.43.1.9
Probab=48.26 E-value=49 Score=23.42 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=33.0
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHh
Q 047915 240 QVVRLQLNKDDTERILLTCKSRG-IKLCGMLAAAGLIAAHN 279 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~g-vT~~~~l~Aa~~~al~~ 279 (393)
..+.++++++.-..|..++...| .|++.++..+......+
T Consensus 6 ~ri~~R~~~e~k~lI~~AA~~~G~~s~s~Fv~~aa~~~A~~ 46 (90)
T 1y9b_A 6 PRITARVDVDTQDLLAKAAALAGMSSINSFVLNAAIEKAKQ 46 (90)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cceeeeCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999 59999988776555443
No 47
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=48.25 E-value=26 Score=23.78 Aligned_cols=34 Identities=9% Similarity=-0.022 Sum_probs=29.2
Q ss_pred EEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 047915 244 LQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAA 277 (393)
Q Consensus 244 ~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al 277 (393)
..++.+...+|...++++|.|.+.++..-+-...
T Consensus 7 Rnvpdev~~~L~~rAa~~G~S~~~ylr~~Le~~a 40 (73)
T 3h87_C 7 RDIPDDVLASLDAIAARLGLSRTEYIRRRLAQDA 40 (73)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999987764433
No 48
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=44.96 E-value=96 Score=26.42 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=52.5
Q ss_pred EEEeCHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHhcC-------C---C----CceEEEeeccccccCCCCC
Q 047915 243 RLQLNKDDTERILLTCKS------RGIKLCGMLAAAGLIAAHNSD-------N---Q----RKYAVATLTDCRSILEPPL 302 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~------~gvT~~~~l~Aa~~~al~~~~-------g---~----~~~~i~~pv~~R~~~~~~~ 302 (393)
...++-....++++..|+ .++|++.+++-|...++.++- + + +.+.++..++.-
T Consensus 44 ~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~------- 116 (243)
T 1dpb_A 44 FESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTP------- 116 (243)
T ss_dssp EEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEEECTTSSCEEECSSCCEEECEEET-------
T ss_pred EEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEEEecCCCeEEEeCceeEEEEEECC-------
Confidence 455666666666655554 689999999999999997653 1 0 122333333210
Q ss_pred CCCceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 303 SNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 303 ~~~~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+ |.+ +|+.... ...+|.++++++++...++.+.+
T Consensus 117 -~---GL~---vPvi~~a-~~~sl~ei~~~~~~l~~~ar~~k 150 (243)
T 1dpb_A 117 -D---GLL---VPVIRNV-DQKSLLQLAAEAAELAEKARSKK 150 (243)
T ss_dssp -T---EEE---CCEETTG-GGSCHHHHHHHHHHHHHHHHTTC
T ss_pred -C---cEE---EEEeCCC-CCCCHHHHHHHHHHHHHHHHcCC
Confidence 0 111 2222222 24699999999999888776543
No 49
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=43.21 E-value=93 Score=26.69 Aligned_cols=96 Identities=10% Similarity=0.042 Sum_probs=52.3
Q ss_pred EEEeCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCceEEEeecccc--ccCCCCCCCCceeeEeee-----
Q 047915 243 RLQLNKDDTERILLTCKSR--GIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCR--SILEPPLSNHRFGFYHSA----- 313 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~~--gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R--~~~~~~~~~~~~G~~~~~----- 313 (393)
...++-....++++..|+. ++|++.+++-|...++.++-. +.... .+.. .... ..+.-.+|.-+.+
T Consensus 43 ~~evDvt~l~~~r~~~k~~~~kls~~~~iikAva~AL~~~P~---~Na~~-~~~~~~~~i~-~~~~vnigvAV~t~~GL~ 117 (250)
T 3l60_A 43 SVEVICAELLRLRDRFVSAAPEITPFALTLRLLVIALKHNVI---LNSTW-VDSGEGPQVH-VHRGVHLGFGAATERGLL 117 (250)
T ss_dssp EEEEECHHHHHHHHHHTTTCTTCCHHHHHHHHHHHHHHHCGG---GSEEE-ECTTTSCEEE-ECSSCCEEECEEETTEEE
T ss_pred EEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHH---hhEEE-eccCCCCeEE-EcCceeEEEEEEcCCCeE
Confidence 3456556666666655555 569999999999999987531 00000 0000 0000 0011223333311
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 314 IMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 314 ~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+|+ +.-....+|.++++++++...++.+.+
T Consensus 118 vPv-i~~ad~~sl~ei~~~i~~l~~~Ar~gk 147 (250)
T 3l60_A 118 VPV-VTDAQDKNTRELASRVAELITGAREGT 147 (250)
T ss_dssp CCE-ETTGGGCCHHHHHHHHHHHHHHHHHTC
T ss_pred EeE-EecCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 222 222245899999999998887776554
No 50
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=41.83 E-value=1.3e+02 Score=25.92 Aligned_cols=87 Identities=7% Similarity=0.044 Sum_probs=52.7
Q ss_pred EEEeCHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHhcC-------CC-------CceEEEeeccccccCCCCC
Q 047915 243 RLQLNKDDTERILLTCKS------RGIKLCGMLAAAGLIAAHNSD-------NQ-------RKYAVATLTDCRSILEPPL 302 (393)
Q Consensus 243 ~~~l~~~~t~~l~~~ck~------~gvT~~~~l~Aa~~~al~~~~-------g~-------~~~~i~~pv~~R~~~~~~~ 302 (393)
...++-....++++..|+ .++|++.+++-|...++.++- +. +.+.+++.|+.-
T Consensus 59 ~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~------- 131 (262)
T 2ii3_A 59 CDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTE------- 131 (262)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEEECTTSCEEEECSSCCEEECEEET-------
T ss_pred EEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEEEeCCCCEEEEecccceEEEEEcC-------
Confidence 455666666666555554 589999999999999997653 11 122233333210
Q ss_pred CCCceeeEeeeccceeeCCCCCcHHHHHHHHHHHHHhhhccC
Q 047915 303 SNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCN 344 (393)
Q Consensus 303 ~~~~~G~~~~~~~~~~~v~~~~~f~~la~~v~~~~~~~~~~~ 344 (393)
+ |.+ +|+..++ ...+|.++++++++...++.+.+
T Consensus 132 -~---GL~---vPvi~~a-~~~sl~ei~~~~~~l~~~ar~~k 165 (262)
T 2ii3_A 132 -Q---GLI---VPNVKNV-QIRSIFEIATELNRLQKLGSAGQ 165 (262)
T ss_dssp -T---EEE---CCEETTG-GGCCHHHHHHHHHHHHHHHHHTC
T ss_pred -C---CEE---EEEecCC-CCCCHHHHHHHHHHHHHHHHhCC
Confidence 0 211 2222222 34799999999999888776654
No 51
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=34.86 E-value=8.1 Score=36.40 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred EEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915 151 VVALRLHVAACDRTTAVSLLKELLLVLV 178 (393)
Q Consensus 151 ~l~l~~hH~i~DG~S~~~~~~~l~~~y~ 178 (393)
.|.+++||-++||.-+..|+++|-+++.
T Consensus 392 ~lsls~DHRviDG~~aa~Fl~~lk~~Le 419 (428)
T 3dva_I 392 ALSLSFDHRMIDGATAQKALNHIKRLLS 419 (428)
T ss_dssp ----------------------------
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999883
No 52
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=32.47 E-value=1.2e+02 Score=22.98 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=34.2
Q ss_pred EEEEEeCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 047915 241 VVRLQLNKDDTERILLTCKSRG-IKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~g-vT~~~~l~Aa~~~al~~~ 280 (393)
...++|++++.+.|.+.|++.| .|-+.++-.|.-..+.+.
T Consensus 3 risVsLp~~ll~~lD~~v~~~~y~sRSe~Ir~air~~l~~~ 43 (133)
T 2hza_A 3 RVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQE 43 (133)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999 799999988887666543
No 53
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=30.91 E-value=1.2e+02 Score=29.83 Aligned_cols=43 Identities=14% Similarity=-0.137 Sum_probs=32.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCC
Q 047915 256 LTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILE 299 (393)
Q Consensus 256 ~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~ 299 (393)
.++|+.|+++-++++-|+++|.++..|.-.- ..=++++|.+..
T Consensus 399 ~~iK~~k~SPDafiQmAlQLAyyr~~G~~~~-TYEsastR~F~~ 441 (616)
T 1nm8_A 399 DFPKSEKLSPDAFIQMALQLAYYRIYGQACA-TYESASLRMFHL 441 (616)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHSSCCC-EEEEEECTTSTT
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHHcCCCCC-eEeccccccCCC
Confidence 5678899999999999999999998887322 233556776543
No 54
>3kk4_A Uncharacterized protein BP1543; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: CME; 1.95A {Bordetella pertussis tohama I}
Probab=30.71 E-value=68 Score=24.18 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=29.3
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 047915 240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAG 273 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~ 273 (393)
....++|.+..+..|.+.|++.|.|++.++.-..
T Consensus 28 hrTSIrLE~~FW~~L~eIA~~~g~tv~~Lia~I~ 61 (125)
T 3kk4_A 28 VATSVRLEQLFWDVLEEIAARDGMRVTQLIERLY 61 (125)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EeeeeehhHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3556899999999999999999999998877654
No 55
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=25.26 E-value=1.4e+02 Score=21.38 Aligned_cols=35 Identities=9% Similarity=0.001 Sum_probs=29.3
Q ss_pred EEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 047915 244 LQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAH 278 (393)
Q Consensus 244 ~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~ 278 (393)
+.++.+...+|...|++.|+|+.+++-=.+.-+|.
T Consensus 3 IvIEeslY~~LkelAe~EGvSvSav~RkLL~EyL~ 37 (106)
T 4hv0_A 3 VTVEEEVYEFLKKKAKEEGTSVPAVIRKILKEYFG 37 (106)
T ss_dssp EEEEHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred EEeeHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 45788999999999999999999998776655553
No 56
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=24.04 E-value=1.4e+02 Score=23.19 Aligned_cols=41 Identities=5% Similarity=-0.075 Sum_probs=35.3
Q ss_pred cEEEEEeCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 047915 240 QVVRLQLNKDDTERILLTCKSRG-IKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 240 ~~~~~~l~~~~t~~l~~~ck~~g-vT~~~~l~Aa~~~al~~~ 280 (393)
....++|+.++...|.+.|++.| .|-+.++-.|.-..+.+.
T Consensus 11 ~risVsLp~~ll~~lD~~v~~~~y~sRSe~Ir~Air~~l~~~ 52 (148)
T 2wvf_A 11 IRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVED 52 (148)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCS
T ss_pred EEEEEEeCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999 799999988887777653
No 57
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=23.43 E-value=1.6e+02 Score=22.48 Aligned_cols=40 Identities=5% Similarity=-0.137 Sum_probs=34.7
Q ss_pred EEEEEeCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 047915 241 VVRLQLNKDDTERILLTCKSRG-IKLCGMLAAAGLIAAHNS 280 (393)
Q Consensus 241 ~~~~~l~~~~t~~l~~~ck~~g-vT~~~~l~Aa~~~al~~~ 280 (393)
...++|+.++...|.+.+++.| .|-+.++-.|+-..+.+.
T Consensus 5 risVsLp~~l~~~ld~~v~~~~y~sRSe~Ir~air~~l~~~ 45 (138)
T 2bj7_A 5 RFSISIPSKLLEKFDQIIEEIGYENRSEAIRDLIRDFIIRH 45 (138)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999 799999988887777654
Done!