Query 047919
Match_columns 101
No_of_seqs 121 out of 660
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 3.6E-40 7.8E-45 228.8 10.8 85 11-97 14-103 (104)
2 PLN03220 uncharacterized prote 100.0 9.5E-40 2.1E-44 226.8 10.8 96 1-96 1-102 (105)
3 PF02519 Auxin_inducible: Auxi 100.0 5.5E-36 1.2E-40 205.7 9.3 68 29-98 33-100 (100)
4 PLN03219 uncharacterized prote 100.0 1.1E-34 2.4E-39 202.4 10.3 69 29-97 36-105 (108)
5 PF02214 BTB_2: BTB/POZ domain 89.0 0.47 1E-05 30.6 2.8 57 39-99 3-62 (94)
6 PRK02899 adaptor protein; Prov 80.9 1.5 3.2E-05 33.2 2.6 24 59-83 39-62 (197)
7 smart00666 PB1 PB1 domain. Pho 80.2 5.9 0.00013 24.7 4.8 52 41-98 8-69 (81)
8 PF02100 ODC_AZ: Ornithine dec 77.8 3.7 8E-05 28.3 3.6 50 45-96 23-76 (108)
9 PRK02315 adaptor protein; Prov 73.8 2.6 5.7E-05 32.5 2.2 24 59-83 39-62 (233)
10 PF05389 MecA: Negative regula 68.0 1.7 3.7E-05 32.7 0.0 25 58-83 38-62 (220)
11 PRK14189 bifunctional 5,10-met 58.7 58 0.0013 26.1 7.1 54 33-99 32-87 (285)
12 PRK14193 bifunctional 5,10-met 55.6 62 0.0013 26.0 6.9 54 33-99 32-87 (284)
13 PRK14177 bifunctional 5,10-met 53.0 82 0.0018 25.3 7.2 53 34-99 34-88 (284)
14 cd06410 PB1_UP2 Uncharacterize 52.7 38 0.00083 22.9 4.5 52 38-95 17-80 (97)
15 cd05992 PB1 The PB1 domain is 52.1 53 0.0011 20.0 7.6 55 39-98 5-69 (81)
16 PRK14194 bifunctional 5,10-met 51.7 79 0.0017 25.6 6.9 54 33-99 33-88 (301)
17 PRK14172 bifunctional 5,10-met 51.6 83 0.0018 25.2 6.9 53 34-99 33-87 (278)
18 PF02209 VHP: Villin headpiece 51.4 7.6 0.00016 22.2 0.8 19 55-73 1-19 (36)
19 PF08861 DUF1828: Domain of un 51.2 54 0.0012 21.2 5.0 40 58-97 44-83 (90)
20 smart00153 VHP Villin headpiec 50.4 9 0.00019 21.8 1.0 19 55-73 1-19 (36)
21 PRK14186 bifunctional 5,10-met 45.6 1.1E+02 0.0025 24.6 7.0 54 33-99 32-87 (297)
22 PF11834 DUF3354: Domain of un 44.9 19 0.00041 23.2 2.0 24 46-75 19-42 (69)
23 PRK14166 bifunctional 5,10-met 44.2 1.2E+02 0.0026 24.3 6.9 54 33-99 30-85 (282)
24 PRK10308 3-methyl-adenine DNA 44.1 1E+02 0.0022 24.4 6.3 65 34-99 45-123 (283)
25 PRK14188 bifunctional 5,10-met 41.9 1.5E+02 0.0033 23.8 7.1 54 33-99 32-87 (296)
26 PRK14169 bifunctional 5,10-met 41.6 1.5E+02 0.0032 23.8 7.0 54 33-99 30-85 (282)
27 PRK14176 bifunctional 5,10-met 41.1 1.8E+02 0.0039 23.4 7.4 54 33-99 38-93 (287)
28 PRK14190 bifunctional 5,10-met 40.8 1.5E+02 0.0032 23.8 6.9 54 33-99 32-87 (284)
29 PLN02897 tetrahydrofolate dehy 40.4 1.4E+02 0.0031 24.8 6.9 54 33-99 86-141 (345)
30 PRK14182 bifunctional 5,10-met 40.1 1.5E+02 0.0033 23.8 6.8 55 32-99 29-85 (282)
31 PRK14192 bifunctional 5,10-met 40.0 1.7E+02 0.0036 23.2 7.0 54 33-99 33-88 (283)
32 PRK14171 bifunctional 5,10-met 39.9 1.8E+02 0.004 23.4 7.3 54 33-99 32-87 (288)
33 cd06396 PB1_NBR1 The PB1 domai 39.0 1.2E+02 0.0025 20.2 6.3 51 45-98 10-68 (81)
34 PRK10792 bifunctional 5,10-met 38.7 1.4E+02 0.0031 23.9 6.5 54 33-99 33-88 (285)
35 PRK14170 bifunctional 5,10-met 38.5 1.6E+02 0.0035 23.6 6.8 54 33-99 31-86 (284)
36 PRK14179 bifunctional 5,10-met 38.3 1.7E+02 0.0037 23.5 6.8 54 33-99 32-87 (284)
37 PRK14178 bifunctional 5,10-met 37.7 1.9E+02 0.0042 23.1 7.1 54 33-99 26-81 (279)
38 PF12058 DUF3539: Protein of u 37.4 6.3 0.00014 26.9 -1.2 11 54-64 4-14 (88)
39 PF00763 THF_DHG_CYH: Tetrahyd 37.3 1.3E+02 0.0029 20.4 7.2 55 32-99 28-84 (117)
40 PRK14175 bifunctional 5,10-met 37.3 1.7E+02 0.0036 23.5 6.7 54 33-99 32-87 (286)
41 cd06407 PB1_NLP A PB1 domain i 37.2 1.2E+02 0.0026 19.8 6.0 48 40-92 6-64 (82)
42 PRK14187 bifunctional 5,10-met 37.2 2.1E+02 0.0044 23.2 7.2 54 33-99 32-87 (294)
43 PRK14167 bifunctional 5,10-met 36.9 1.8E+02 0.004 23.5 6.9 54 33-99 31-86 (297)
44 PF11822 DUF3342: Domain of un 36.8 41 0.00089 27.7 3.2 51 45-99 12-67 (317)
45 PRK14184 bifunctional 5,10-met 35.6 1.9E+02 0.0041 23.3 6.7 54 33-99 31-86 (286)
46 PRK14180 bifunctional 5,10-met 35.6 2E+02 0.0044 23.1 6.9 54 33-99 31-86 (282)
47 PRK02797 4-alpha-L-fucosyltran 35.2 1.9E+02 0.0042 23.9 6.8 62 32-97 142-224 (322)
48 cd06398 PB1_Joka2 The PB1 doma 34.8 1.4E+02 0.003 19.9 6.2 53 42-95 8-72 (91)
49 PF12062 HSNSD: heparan sulfat 34.3 33 0.00071 29.9 2.3 41 33-74 95-141 (487)
50 PF00651 BTB: BTB/POZ domain; 33.6 1.2E+02 0.0026 18.9 4.8 54 37-97 13-71 (111)
51 PF07429 Glyco_transf_56: 4-al 33.5 1.9E+02 0.0042 24.3 6.6 45 31-75 180-245 (360)
52 PF00564 PB1: PB1 domain; Int 33.2 1.2E+02 0.0025 18.6 6.2 53 40-98 7-70 (84)
53 cd01406 SIR2-like Sir2-like: P 33.1 96 0.0021 23.1 4.5 36 35-77 1-36 (242)
54 PRK14183 bifunctional 5,10-met 32.6 79 0.0017 25.4 4.1 54 33-99 31-86 (281)
55 PRK14174 bifunctional 5,10-met 32.5 2.5E+02 0.0053 22.7 7.0 54 33-99 31-86 (295)
56 PF10087 DUF2325: Uncharacteri 31.3 1.5E+02 0.0032 19.2 5.5 54 37-97 42-96 (97)
57 PRK14168 bifunctional 5,10-met 29.9 2.8E+02 0.006 22.4 6.9 54 33-99 33-88 (297)
58 cd04395 RhoGAP_ARHGAP21 RhoGAP 29.3 1.3E+02 0.0028 22.0 4.5 40 59-99 19-58 (196)
59 PRK14191 bifunctional 5,10-met 29.2 2.8E+02 0.0061 22.3 6.8 54 33-99 31-86 (285)
60 PF11876 DUF3396: Protein of u 28.3 55 0.0012 24.8 2.5 40 45-84 23-64 (208)
61 PRK14181 bifunctional 5,10-met 27.8 3.3E+02 0.007 22.0 6.9 54 33-99 26-81 (287)
62 PLN02616 tetrahydrofolate dehy 27.5 3E+02 0.0064 23.1 6.8 54 33-99 103-158 (364)
63 TIGR03793 TOMM_pelo TOMM prope 26.4 1.2E+02 0.0025 19.8 3.5 27 56-83 14-44 (77)
64 cd04751 Commd3 COMM_Domain con 26.1 78 0.0017 21.0 2.7 21 79-99 65-85 (95)
65 TIGR02529 EutJ ethanolamine ut 26.1 77 0.0017 24.0 2.9 41 47-88 33-73 (239)
66 PF11470 TUG-UBL1: GLUT4 regul 26.0 89 0.0019 19.7 2.8 35 45-81 5-39 (65)
67 cd06536 CIDE_N_ICAD CIDE_N dom 25.9 1.2E+02 0.0026 20.2 3.5 36 45-85 12-47 (80)
68 PLN02516 methylenetetrahydrofo 25.8 3.6E+02 0.0078 21.8 7.3 54 33-99 39-94 (299)
69 PF08948 DUF1859: Domain of un 24.9 24 0.00053 25.2 0.0 28 33-62 86-123 (126)
70 PF14317 YcxB: YcxB-like prote 23.4 1.5E+02 0.0032 16.5 3.7 32 32-65 27-58 (62)
71 PF03460 NIR_SIR_ferr: Nitrite 23.2 1.4E+02 0.003 17.8 3.2 57 33-99 6-68 (69)
72 PRK14185 bifunctional 5,10-met 22.8 4.1E+02 0.0089 21.4 7.2 54 33-99 31-86 (293)
73 KOG1748 Acyl carrier protein/N 22.3 45 0.00097 24.3 0.9 28 69-96 98-126 (131)
74 smart00225 BTB Broad-Complex, 21.9 1.3E+02 0.0028 17.2 2.9 53 39-98 4-59 (90)
75 PF05194 UreE_C: UreE urease a 20.7 1.5E+02 0.0032 19.1 3.1 27 35-68 25-51 (87)
76 cd04404 RhoGAP-p50rhoGAP RhoGA 20.4 2.4E+02 0.0052 20.4 4.5 40 59-99 24-63 (195)
77 cd06397 PB1_UP1 Uncharacterize 20.4 2.8E+02 0.0061 18.7 5.5 46 45-95 10-65 (82)
78 PF11731 Cdd1: Pathogenicity l 20.4 1.6E+02 0.0034 20.1 3.3 32 62-99 45-76 (93)
79 COG1759 5-formaminoimidazole-4 20.4 44 0.00096 28.0 0.7 24 30-53 88-112 (361)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=228.76 Aligned_cols=85 Identities=53% Similarity=0.914 Sum_probs=80.4
Q ss_pred HHHHHHHhhhhhcccCC-----CCCCCCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEeeC
Q 047919 11 NAKQILKKHNNHALSRN-----QPAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPC 85 (101)
Q Consensus 11 ~~k~~l~r~~s~~~~~~-----~~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC 85 (101)
++||+|+||.|.+++++ .+.++|+||||||||+ +++||+||++|||||.|++||++|||||||+|+ |+|+|||
T Consensus 14 ~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~-G~L~IPC 91 (104)
T PLN03090 14 MLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHD-MGLTIPC 91 (104)
T ss_pred HHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC-CcEEEeC
Confidence 78999999999987763 5678999999999998 899999999999999999999999999999998 8999999
Q ss_pred cHHHHHHHHHHH
Q 047919 86 KEDDFIDLTYRL 97 (101)
Q Consensus 86 ~~~~Fe~vl~~l 97 (101)
+++.|++++|+|
T Consensus 92 ~~~~Fe~ll~~i 103 (104)
T PLN03090 92 EEVVFRSLTSMI 103 (104)
T ss_pred CHHHHHHHHHHh
Confidence 999999999998
No 2
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=9.5e-40 Score=226.83 Aligned_cols=96 Identities=58% Similarity=1.018 Sum_probs=85.7
Q ss_pred CcccchhhhHHHHHHHHhhhhhcccC---CCCCCCCCceEEEEeec---CceeEEEEeccccCchHHHHHHHHHHHHhCC
Q 047919 1 MGIRLPSVIQNAKQILKKHNNHALSR---NQPAEVPKGHIAVYVGE---MERKRFVVPISYLNHPLFADLLKKAEEEFGF 74 (101)
Q Consensus 1 ~~~~~~~~~~~~k~~l~r~~s~~~~~---~~~~~vpkG~~~VyVG~---~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~ 74 (101)
||+++|+|..+.||+|+|+....+.. +.+.+|||||||||||+ ++++||+||++|||||.|++||++|||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf 80 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF 80 (105)
T ss_pred CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence 99999999999999999998433332 35679999999999997 2589999999999999999999999999999
Q ss_pred ccCCCceEeeCcHHHHHHHHHH
Q 047919 75 NHPMGGLTVPCKEDDFIDLTYR 96 (101)
Q Consensus 75 ~~~~G~L~IPC~~~~Fe~vl~~ 96 (101)
+|++|+|+|||+++.|+++++.
T Consensus 81 ~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 81 NHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCEEeeCCHHHHHHHHHh
Confidence 9966999999999999999863
No 3
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=5.5e-36 Score=205.65 Aligned_cols=68 Identities=63% Similarity=1.125 Sum_probs=65.4
Q ss_pred CCCCCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHh
Q 047919 29 PAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98 (101)
Q Consensus 29 ~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~ 98 (101)
..++|+||||||||+ +++||+||++|||||.|++||++|||||||+++ |+|+|||+++.|++++|+|+
T Consensus 33 ~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~-G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 33 ESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD-GPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred cCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCCC-CcEEeeCCHHHHHHHHHHhC
Confidence 378999999999998 899999999999999999999999999999997 99999999999999999985
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=202.36 Aligned_cols=69 Identities=67% Similarity=1.216 Sum_probs=64.5
Q ss_pred CCCCCCceEEEEeec-CceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHH
Q 047919 29 PAEVPKGHIAVYVGE-MERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRL 97 (101)
Q Consensus 29 ~~~vpkG~~~VyVG~-~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l 97 (101)
+.++||||+|||||+ ++++||+||++|||||+|++||++|||||||+|++|+|+|||+++.|+++++.-
T Consensus 36 ~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~ 105 (108)
T PLN03219 36 SGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH 105 (108)
T ss_pred CCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence 467999999999998 469999999999999999999999999999998669999999999999999863
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=89.04 E-value=0.47 Score=30.62 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=42.2
Q ss_pred EEeecCceeEEEEeccccC-ch--HHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHhh
Q 047919 39 VYVGEMERKRFVVPISYLN-HP--LFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 39 VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
+=||. ++|.++.+.|. +| .|..+++...... ++.+.|.+-|-++...|++|+..++.
T Consensus 3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~-~~~~~~~~fiDRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDD-YDDDDGEYFIDRDPELFEYILNYLRT 62 (94)
T ss_dssp EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGG-EETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred EEECC---EEEEEcHHHHhhCCCChhhhHHhhccccc-cCCccceEEeccChhhhhHHHHHHhh
Confidence 45775 89999999887 54 6888888652222 22234899999999999999998865
No 6
>PRK02899 adaptor protein; Provisional
Probab=80.90 E-value=1.5 Score=33.16 Aligned_cols=24 Identities=38% Similarity=0.807 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHhCCccCCCceEe
Q 047919 59 PLFADLLKKAEEEFGFNHPMGGLTV 83 (101)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~I 83 (101)
-+|.++|++|..|+||..+ |||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~-~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEAD-GPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccC-CeEEE
Confidence 3577789999999999977 99976
No 7
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=80.25 E-value=5.9 Score=24.68 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=38.7
Q ss_pred eecCceeEEEEeccccCchHHHHHHHHHHHHhCCc----------cCCCceEeeCcHHHHHHHHHHHh
Q 047919 41 VGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFN----------HPMGGLTVPCKEDDFIDLTYRLH 98 (101)
Q Consensus 41 VG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~ 98 (101)
-|+ +.+||.+|- .+.|.+|..+..+.|+.. .++..++|.|+. .+..++.+..
T Consensus 8 ~~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~ 69 (81)
T smart00666 8 YGG-ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYD 69 (81)
T ss_pred ECC-EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHH
Confidence 365 789999985 778999999999999884 233478888866 5666665544
No 8
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=77.82 E-value=3.7 Score=28.35 Aligned_cols=50 Identities=32% Similarity=0.397 Sum_probs=26.4
Q ss_pred ceeEEE-EeccccCc---hHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHH
Q 047919 45 ERKRFV-VPISYLNH---PLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYR 96 (101)
Q Consensus 45 ~~~Rfv-Vp~~~L~h---P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~ 96 (101)
++.=|+ +|-..+.+ ..|.+||+.|||.+|.++ -.+.++=+-.....++..
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~ 76 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRT 76 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHH
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhh
Confidence 456666 56555444 459999999999999886 467777555555555443
No 9
>PRK02315 adaptor protein; Provisional
Probab=73.85 E-value=2.6 Score=32.47 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHhCCccCCCceEe
Q 047919 59 PLFADLLKKAEEEFGFNHPMGGLTV 83 (101)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~I 83 (101)
-+|.++|++|..|+||..+ |||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~~-~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFADE-GPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCcccC-CeEEE
Confidence 4699999999999999985 99986
No 10
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=67.96 E-value=1.7 Score=32.69 Aligned_cols=25 Identities=40% Similarity=0.736 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhCCccCCCceEe
Q 047919 58 HPLFADLLKKAEEEFGFNHPMGGLTV 83 (101)
Q Consensus 58 hP~F~~LL~~aeEEfG~~~~~G~L~I 83 (101)
+-.|.++|++|.+|+||+.+ |+|++
T Consensus 38 e~fF~~ileea~~e~~F~~~-~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFEND-GPLTF 62 (220)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhccccCcccC-CeEEE
Confidence 45699999999999999985 88875
No 11
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.73 E-value=58 Score=26.15 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=42.2
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-...+--.+++++.|++.+ .+.+| ++.+.|+..+..+++
T Consensus 32 ~p~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 32 QPGLAVILVGD-NP----------ASQVYVRNKVKACEDNGFHSL--KDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCeEEEEEeCC-Cc----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 44888899997 22 234566778889999999875 67888 889999999998865
No 12
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.65 E-value=62 Score=25.99 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=41.3
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...++||+ +. ..-.....-.+++|++|++.+ .+.+| ++.+.|...+..+++
T Consensus 32 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 32 TPGLGTVLVGD-DP----------GSQAYVRGKHRDCAEVGITSI--RRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred CceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44888899997 21 133456778889999999875 57888 889999999988864
No 13
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.01 E-value=82 Score=25.33 Aligned_cols=53 Identities=11% Similarity=0.248 Sum_probs=40.0
Q ss_pred CceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 34 KGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 34 kG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
.+...|.||+ +. ..-...+--.++++++|+..+ .+.+| |+.+.|...+..|+.
T Consensus 34 P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 34 PKLATILVGN-NP----------ASETYVSMKVKACHKVGMGSE--MIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred CeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3788889997 21 123455667788999999875 57787 889999999988864
No 14
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=52.67 E-value=38 Score=22.93 Aligned_cols=52 Identities=29% Similarity=0.324 Sum_probs=36.4
Q ss_pred EEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccC------------CCceEeeCcHHHHHHHHH
Q 047919 38 AVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHP------------MGGLTVPCKEDDFIDLTY 95 (101)
Q Consensus 38 ~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~------------~G~L~IPC~~~~Fe~vl~ 95 (101)
.=|||. +.+--.|+-+ ..|.+|..+..+.++..+. ++-+.|.||.+ ..+++.
T Consensus 17 l~Y~GG-~tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeD-l~~M~~ 80 (97)
T cd06410 17 LRYVGG-ETRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDED-LKNMME 80 (97)
T ss_pred EEEcCC-ceEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHH-HHHHHH
Confidence 469996 7788888866 4678888888888877751 25677888873 344443
No 15
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=52.05 E-value=53 Score=20.04 Aligned_cols=55 Identities=29% Similarity=0.388 Sum_probs=38.7
Q ss_pred EEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCc----------cCCCceEeeCcHHHHHHHHHHHh
Q 047919 39 VYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFN----------HPMGGLTVPCKEDDFIDLTYRLH 98 (101)
Q Consensus 39 VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~ 98 (101)
++-++ +.+||.+|. .++.|.+|..+.++.|+.. .++-.++|.++ +.|+.++....
T Consensus 5 ~~~~~-~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~ 69 (81)
T cd05992 5 VKYGG-EIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEAR 69 (81)
T ss_pred EEecC-CCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHh
Confidence 33443 789999997 7889999999999999885 12234555555 46777666654
No 16
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.71 E-value=79 Score=25.59 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=41.1
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...+.||+ +. ..-.....-.+++|+.|+... .+.+| ++.+.+...+..+++
T Consensus 33 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 33 EPALAVILVGN-DP----------ASQVYVRNKILRAEEAGIRSL--EHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 45888999997 21 123456677889999999875 57887 888899999888864
No 17
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.56 E-value=83 Score=25.21 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=39.6
Q ss_pred CceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 34 KGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 34 kG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
.+...|.||+ +. ..-.....-.+++|+.|+..+ .+.+| |+.+.+...+..|++
T Consensus 33 P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (278)
T PRK14172 33 PKIASILVGN-DG----------GSIYYMNNQEKVANSLGIDFK--KIKLDESISEEDLINEIEELNK 87 (278)
T ss_pred ceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3778889997 21 123345567789999999875 67888 888889998888864
No 18
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=51.39 E-value=7.6 Score=22.21 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=15.2
Q ss_pred ccCchHHHHHHHHHHHHhC
Q 047919 55 YLNHPLFADLLKKAEEEFG 73 (101)
Q Consensus 55 ~L~hP~F~~LL~~aeEEfG 73 (101)
||+.-.|+++..++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 19
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=51.17 E-value=54 Score=21.22 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHH
Q 047919 58 HPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRL 97 (101)
Q Consensus 58 hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l 97 (101)
.|.=+++|+..-..||++-++|.|.+.++.+.|-.....+
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~l 83 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRL 83 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHH
Confidence 6777899999999999998889999999999887766554
No 20
>smart00153 VHP Villin headpiece domain.
Probab=50.36 E-value=9 Score=21.81 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=17.0
Q ss_pred ccCchHHHHHHHHHHHHhC
Q 047919 55 YLNHPLFADLLKKAEEEFG 73 (101)
Q Consensus 55 ~L~hP~F~~LL~~aeEEfG 73 (101)
||+.-.|+.++.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7899999999999999884
No 21
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.58 E-value=1.1e+02 Score=24.63 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=40.8
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-....--.+++|++|++.+ .+.+| ++.+.|...+..++.
T Consensus 32 ~p~LaiI~vgd-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (297)
T PRK14186 32 PPGLAVLRVGD-DP----------ASAVYVRNKEKACARVGIASF--GKHLPADTSQAEVEALIAQLNQ 87 (297)
T ss_pred CceEEEEEeCC-Ch----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44788899997 21 233456777889999999875 57776 888899999988864
No 22
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=44.87 E-value=19 Score=23.18 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=19.4
Q ss_pred eeEEEEeccccCchHHHHHHHHHHHHhCCc
Q 047919 46 RKRFVVPISYLNHPLFADLLKKAEEEFGFN 75 (101)
Q Consensus 46 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~ 75 (101)
.+=..+| -.+++||+.|++.||+.
T Consensus 19 GKvi~lP------~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 19 GKVIWLP------DSLEELLKIASEKFGFS 42 (69)
T ss_pred CEEEEcC------ccHHHHHHHHHHHhCCC
Confidence 4556666 36999999999999995
No 23
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.20 E-value=1.2e+02 Score=24.29 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=40.7
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
..+...|.||+ +. ..-.....-.++++++|++.+ .+.+| ++.+.|...+..|+.
T Consensus 30 ~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 30 ESCLAVILVGD-NP----------ASQTYVKSKAKACEECGIKSL--VYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred CceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44888899997 21 123456677888999999875 67788 888899999888864
No 24
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=44.13 E-value=1e+02 Score=24.39 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=43.3
Q ss_pred CceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccC--------------CCceEeeCcHHHHHHHHHHHhh
Q 047919 34 KGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHP--------------MGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 34 kG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~--------------~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
.|.+.|.-.+ +..++.+.++.-.-+....++.....-||.+.+ .-+|+||...+.||.+++.|=.
T Consensus 45 ~~~~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aIig 123 (283)
T PRK10308 45 RGVVTVIPDI-ARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAILG 123 (283)
T ss_pred cEEEEEEEcC-CCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHH
Confidence 4555555443 444565655553335556677777777777755 2469999999999999987643
No 25
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.88 E-value=1.5e+02 Score=23.77 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=40.5
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-...+--.+++|++|++.+ .+.+| ++.+.|...+..+++
T Consensus 32 ~p~La~i~vg~-~~----------~s~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~ 87 (296)
T PRK14188 32 TPGLAVVLVGE-DP----------ASQVYVRSKGKQTKEAGMASF--EHKLPADTSQAELLALIARLNA 87 (296)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 45888999997 21 123456777888999999865 56777 888899999888864
No 26
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.59 E-value=1.5e+02 Score=23.83 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=40.2
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-....--.++++++|++.+ -+.+| ++.+.|...+..++.
T Consensus 30 ~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 30 TPTLAVVLVGS-DP----------ASEVYVRNKQRRAEDIGVRSL--MFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34788899997 21 123356677888999999875 57887 888899999888864
No 27
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.14 E-value=1.8e+02 Score=23.45 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=41.4
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-....--.+++|+.|+..+ .+.+| ++.+.+...+..|++
T Consensus 38 ~P~Laii~vg~-d~----------aS~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~LN~ 93 (287)
T PRK14176 38 TPGLATILVGD-DP----------ASKMYVRLKHKACERVGIRAE--DQFLPADTTQEELLELIDSLNK 93 (287)
T ss_pred CCeEEEEEECC-Cc----------chHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44888899997 21 234567778899999999875 67887 788899999888864
No 28
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.85 E-value=1.5e+02 Score=23.84 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=40.4
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-....--.+++++.|++.+ .+.+| ++.+.|+..+..+++
T Consensus 32 ~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (284)
T PRK14190 32 VPGLAVILVGD-DP----------ASHSYVRGKKKAAEKVGIYSE--LYEFPADITEEELLALIDRLNA 87 (284)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44788889997 21 233456677889999999875 67888 778889998888864
No 29
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=40.40 E-value=1.4e+02 Score=24.78 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=40.3
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. . .-....--.+++|++|++.. .+.+| ++.+.+...+..+|+
T Consensus 86 ~P~LaiIlvGd-dp------a----S~~Yv~~k~K~a~~~GI~~~--~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 86 VPGLAVVLVGQ-QR------D----SQTYVRNKIKACEETGIKSL--LAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred CCeEEEEEeCC-Ch------H----HHHHHHHHHHHHHhcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34788899997 21 1 12456677889999999975 67787 788889998888864
No 30
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.06 E-value=1.5e+02 Score=23.78 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=40.9
Q ss_pred CCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 32 VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 32 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
.+.+...|.||+ +. ..-....--.+++++.|++.+ .+.+| ++.+.++..+..++.
T Consensus 29 ~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 29 VQTGLTVVRVGD-DP----------ASAIYVRGKRKDCEEVGITSV--EHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred CCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 345788999997 21 133456677888999999875 67887 888889988888764
No 31
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.01 E-value=1.7e+02 Score=23.20 Aligned_cols=54 Identities=9% Similarity=0.198 Sum_probs=40.6
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEe--eCcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTV--PCKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~I--PC~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-.....-.++.++.|.+.. -+.+ .|+.+.|+.++..+++
T Consensus 33 ~p~L~~i~vg~-~~----------~s~~Y~~~~~~~~~~~Gi~~~--~~~l~~~~~~~~l~~~i~~Ln~ 88 (283)
T PRK14192 33 TPILATILVGD-DP----------ASATYVRMKGNACRRVGMDSL--KVELPQETTTEQLLAKIEELNA 88 (283)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44888999997 21 233467788889999999865 5667 4888899999988865
No 32
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.88 E-value=1.8e+02 Score=23.38 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=39.5
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
..+...|.||+ +. ..-...+--.+++++.|++.+ .+.+| ++.+.+...+..|+.
T Consensus 32 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 32 SPKLAIVLVGD-NP----------ASIIYVKNKIKNAHKIGIDTL--LVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred CCeEEEEEeCC-Cc----------cHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 34688899997 31 133456667788999999875 67887 888888888887764
No 33
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=39.01 E-value=1.2e+02 Score=20.21 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=36.9
Q ss_pred ceeEEEEeccccCchHHHHHHHHHHHHhCCc--------cCCCceEeeCcHHHHHHHHHHHh
Q 047919 45 ERKRFVVPISYLNHPLFADLLKKAEEEFGFN--------HPMGGLTVPCKEDDFIDLTYRLH 98 (101)
Q Consensus 45 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~--------~~~G~L~IPC~~~~Fe~vl~~l~ 98 (101)
+..||.++-+ .++.|.+|..+-+.-|+++ .++-+++|.|+++ ++..+...+
T Consensus 10 d~~rf~~~~~--~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~e-LeE~~rl~~ 68 (81)
T cd06396 10 ESQSFLVSDS--ENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGE-YEEALKSAV 68 (81)
T ss_pred eEEEEEecCC--CCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhh-HHHHHHHHH
Confidence 7899998752 2557999999999999963 4456889999885 444444443
No 34
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.68 E-value=1.4e+02 Score=23.92 Aligned_cols=54 Identities=26% Similarity=0.430 Sum_probs=40.7
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
..+...|.||+ +. ..-...+--.++++++|++.. .+.+| |+.+.|...+..+++
T Consensus 33 ~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 88 (285)
T PRK10792 33 APGLAVVLVGS-DP----------ASQVYVASKRKACEEVGFVSR--SYDLPETTSEAELLALIDELNA 88 (285)
T ss_pred CceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34788888997 21 133456777888999999865 67787 899999999988864
No 35
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.51 E-value=1.6e+02 Score=23.64 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=40.6
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...+.||+ +. ..-....--.++++++|++.+ .+.+| ++.+.|...+..+++
T Consensus 31 ~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 31 KPGLAVVLVGD-NQ----------ASRTYVRNKQKRTEEAGMKSV--LIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 45888999997 21 133456778889999999875 57888 778888888888764
No 36
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.32 E-value=1.7e+02 Score=23.49 Aligned_cols=54 Identities=17% Similarity=0.416 Sum_probs=41.0
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-....--.+++|+.|+... .+.+| |+.+.|...+..|++
T Consensus 32 ~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (284)
T PRK14179 32 VPGLVVILVGD-NP----------ASQVYVRNKERSALAAGFKSE--VVRLPETISQEELLDLIERYNQ 87 (284)
T ss_pred CceEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34788899997 21 123456677889999999875 68888 889999999988864
No 37
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.73 E-value=1.9e+02 Score=23.15 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=40.2
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-....--.+++|+.|++.. .+.+| ++.+.|...+..+++
T Consensus 26 ~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 81 (279)
T PRK14178 26 YPRLATVIVGD-DP----------ASQMYVRMKHRACERVGIGSV--GIELPGDATTRTVLERIRRLNE 81 (279)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44788999997 21 122356677889999999875 57777 788889998888864
No 38
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=37.41 E-value=6.3 Score=26.93 Aligned_cols=11 Identities=64% Similarity=1.117 Sum_probs=7.5
Q ss_pred cccCchHHHHH
Q 047919 54 SYLNHPLFADL 64 (101)
Q Consensus 54 ~~L~hP~F~~L 64 (101)
.|||||.|--|
T Consensus 4 ~YLNHPtFGlL 14 (88)
T PF12058_consen 4 TYLNHPTFGLL 14 (88)
T ss_dssp -EEEETTTEEE
T ss_pred ccccCCccchh
Confidence 58999987433
No 39
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=37.32 E-value=1.3e+02 Score=20.41 Aligned_cols=55 Identities=20% Similarity=0.452 Sum_probs=36.7
Q ss_pred CCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 32 VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 32 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
.+.+...|+||+ + | ..-.......++++++|.+-. ...+| ++.+.|...+..++.
T Consensus 28 ~~P~Laii~vg~-d------~----~S~~Y~~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 28 ITPKLAIILVGD-D------P----ASISYVRSKQKAAEKLGIEFE--LIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp ---EEEEEEES---------H----HHHHHHHHHHHHHHHHT-EEE--EEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCC-C------h----hHHHHHHHHHHHHHHcCCceE--EEECCCCcCHHHHHHHHHHHhC
Confidence 567888999997 2 1 123467788899999999875 57776 678888888887764
No 40
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.31 E-value=1.7e+02 Score=23.50 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=40.0
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-....--.+++++.|++.. .+.+| ++.+.|...+..+++
T Consensus 32 ~p~Laii~vg~-~~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 32 TPKLSVILVGN-DG----------ASQSYVRSKKKAAEKIGMISE--IVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44788899997 21 123456677888999999875 67888 778888888888764
No 41
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=37.22 E-value=1.2e+02 Score=19.78 Aligned_cols=48 Identities=25% Similarity=0.312 Sum_probs=35.0
Q ss_pred EeecCceeEEEEeccccCchHHHHHHHHHHHHhCCcc-----------CCCceEeeCcHHHHHH
Q 047919 40 YVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNH-----------PMGGLTVPCKEDDFID 92 (101)
Q Consensus 40 yVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~-----------~~G~L~IPC~~~~Fe~ 92 (101)
..|+ +..||.+|.+ ..|++|.++-.+-|+.+. ++...+|.|+.+.=|.
T Consensus 6 ~~~~-d~~r~~l~~~----~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~ea 64 (82)
T cd06407 6 TYGE-EKIRFRLPPS----WGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEEC 64 (82)
T ss_pred EeCC-eEEEEEcCCC----CCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHH
Confidence 3454 7899998864 369999999999888753 3456788888865443
No 42
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.20 E-value=2.1e+02 Score=23.18 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=40.4
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-.....-.+++++.|+..+ .+.+| ++.+.|...+..+++
T Consensus 32 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~e~~l~~~I~~lN~ 87 (294)
T PRK14187 32 FPCLIVILVGD-DP----------ASQLYVRNKQRKAEMLGLRSE--TILLPSTISESSLIEKINELNN 87 (294)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 45788999997 21 233456777889999999875 57777 778888888888764
No 43
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.89 E-value=1.8e+02 Score=23.46 Aligned_cols=54 Identities=13% Similarity=0.294 Sum_probs=40.4
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-....--.+++++.|++.+ .+.+| ++.+.++..+..+++
T Consensus 31 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (297)
T PRK14167 31 TPGLATVLMSD-DP----------ASETYVSMKQRDCEEVGIEAI--DVEIDPDAPAEELYDTIDELNA 86 (297)
T ss_pred CceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44888889997 22 233456777888999999875 57888 778888888888864
No 44
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=36.78 E-value=41 Score=27.68 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=38.5
Q ss_pred ceeEEEEeccccC--chHHHHHHHH---HHHHhCCccCCCceEeeCcHHHHHHHHHHHhh
Q 047919 45 ERKRFVVPISYLN--HPLFADLLKK---AEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 45 ~~~RfvVp~~~L~--hP~F~~LL~~---aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
..+=|.-|.+.|- ...|++.|.. ..++.. + =.|.+-||+..|+.++..+++
T Consensus 12 ~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~-idisVhCDv~iF~WLm~yv~~ 67 (317)
T PF11822_consen 12 EKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---E-IDISVHCDVHIFEWLMRYVKG 67 (317)
T ss_pred cceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---C-cceEEecChhHHHHHHHHhhc
Confidence 5677888888874 4569999976 433333 2 358888999999999988764
No 45
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.62 E-value=1.9e+02 Score=23.27 Aligned_cols=54 Identities=20% Similarity=0.396 Sum_probs=41.0
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-....--.+++++.|++.+ .+.+| ++.+.|...+..+++
T Consensus 31 ~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 31 APGLAVILVGE-DP----------ASQVYVRNKERACEDAGIVSE--AFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred CCEEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44788899997 21 123456667789999999875 67888 889999999998864
No 46
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.57 E-value=2e+02 Score=23.05 Aligned_cols=54 Identities=20% Similarity=0.395 Sum_probs=39.5
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-...+--.++++++|++.+ .+.+| ++.+.|...+..+++
T Consensus 31 ~P~La~I~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (282)
T PRK14180 31 TPKLVAIIVGN-DP----------ASKTYVASKEKACAQVGIDSQ--VITLPEHTTESELLELIDQLNN 86 (282)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44788899997 21 122356677888999999875 57777 777889998888864
No 47
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=35.20 E-value=1.9e+02 Score=23.89 Aligned_cols=62 Identities=19% Similarity=0.368 Sum_probs=40.0
Q ss_pred CCCceEEEEeec-------------------CceeEEEEeccc--cCchHHHHHHHHHHHHhCCccCCCceEeeCcHHHH
Q 047919 32 VPKGHIAVYVGE-------------------MERKRFVVPISY--LNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDF 90 (101)
Q Consensus 32 vpkG~~~VyVG~-------------------~~~~RfvVp~~~--L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F 90 (101)
.+++.+.+.||. ++.-|+.||.+| =|.-..++..+.+.+-||-+ -+.+-=+--.|
T Consensus 142 ~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~----~~~~L~e~l~f 217 (322)
T PRK02797 142 QRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE----NFQILTEKLPF 217 (322)
T ss_pred cCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc----cEEehhhhCCH
Confidence 466789999985 234599999999 56666777777777778843 24443333344
Q ss_pred HHHHHHH
Q 047919 91 IDLTYRL 97 (101)
Q Consensus 91 e~vl~~l 97 (101)
+.-+..|
T Consensus 218 ~eYl~lL 224 (322)
T PRK02797 218 DDYLALL 224 (322)
T ss_pred HHHHHHH
Confidence 4444443
No 48
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=34.76 E-value=1.4e+02 Score=19.89 Aligned_cols=53 Identities=23% Similarity=0.247 Sum_probs=37.9
Q ss_pred ecCceeEEEEeccc-cCchHHHHHHHHHHHHhCCcc-----------CCCceEeeCcHHHHHHHHH
Q 047919 42 GEMERKRFVVPISY-LNHPLFADLLKKAEEEFGFNH-----------PMGGLTVPCKEDDFIDLTY 95 (101)
Q Consensus 42 G~~~~~RfvVp~~~-L~hP~F~~LL~~aeEEfG~~~-----------~~G~L~IPC~~~~Fe~vl~ 95 (101)
|+ +.+||-+|.+- -.+..|..|.++-++-|.... ++.-++|.|+.+.-+.+-.
T Consensus 8 ~~-~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 8 GG-TLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred CC-EEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 54 79999999641 114578999999998888763 2357888999876665543
No 49
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=34.28 E-value=33 Score=29.89 Aligned_cols=41 Identities=32% Similarity=0.527 Sum_probs=35.6
Q ss_pred CCceEEEEeecCceeEEEEec-----cccCchH-HHHHHHHHHHHhCC
Q 047919 33 PKGHIAVYVGEMERKRFVVPI-----SYLNHPL-FADLLKKAEEEFGF 74 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~-----~~L~hP~-F~~LL~~aeEEfG~ 74 (101)
.||.+|+++-. ++.||-+-+ .|+|-+. -++||++=..|||-
T Consensus 95 ~kg~lP~LT~~-~kGRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~V 141 (487)
T PF12062_consen 95 GKGDLPVLTDN-DKGRYSLIIFENLLKYLNLDSWNRELLDKYCREYGV 141 (487)
T ss_pred CCCCCCccccC-CCCcEEEEEehhHHHHcCChHHHHHHHHHHhHccCc
Confidence 36899999976 788998876 8999998 89999999999984
No 50
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=33.59 E-value=1.2e+02 Score=18.88 Aligned_cols=54 Identities=22% Similarity=0.481 Sum_probs=36.5
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCC--ceEee-CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMG--GLTVP-CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G--~L~IP-C~~~~Fe~vl~~l 97 (101)
+.+.|| +.++|-+.-..| ..|.|+.++... +.... + .+.++ |+...|+.++..+
T Consensus 13 ~~i~v~--d~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~~l~~~ 71 (111)
T PF00651_consen 13 VTIRVG--DGKTFYVHKNILAARSPYFRNLFEGS----KFKES-TVPEISLPDVSPEAFEAFLEYM 71 (111)
T ss_dssp EEEEET--TTEEEEE-HHHHHHHBHHHHHHHTTT----TSTTS-SEEEEEETTSCHHHHHHHHHHH
T ss_pred EEEEEC--CCEEEeechhhhhccchhhhhccccc----ccccc-cccccccccccccccccccccc
Confidence 345556 258888888877 568999999887 22222 3 35555 7899999998865
No 51
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=33.45 E-value=1.9e+02 Score=24.30 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=34.4
Q ss_pred CCCCceEEEEeec-------------------CceeEEEEecccc--CchHHHHHHHHHHHHhCCc
Q 047919 31 EVPKGHIAVYVGE-------------------MERKRFVVPISYL--NHPLFADLLKKAEEEFGFN 75 (101)
Q Consensus 31 ~vpkG~~~VyVG~-------------------~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~ 75 (101)
..+++-+.+.||. ++..|+.||.+|= |.-...++.+.+++-||-+
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~ 245 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAE 245 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCcc
Confidence 3456888999984 3568999999996 4567888888888888843
No 52
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=33.18 E-value=1.2e+02 Score=18.57 Aligned_cols=53 Identities=25% Similarity=0.370 Sum_probs=34.3
Q ss_pred EeecCceeE-EEEeccccCchHHHHHHHHHHHHhCCc----------cCCCceEeeCcHHHHHHHHHHHh
Q 047919 40 YVGEMERKR-FVVPISYLNHPLFADLLKKAEEEFGFN----------HPMGGLTVPCKEDDFIDLTYRLH 98 (101)
Q Consensus 40 yVG~~~~~R-fvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~ 98 (101)
+-++ +.+| +.+| ..+.|.+|..+.++.||.. .++-.++|.++. .++..+...+
T Consensus 7 ~~~~-~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~-Dl~~a~~~~~ 70 (84)
T PF00564_consen 7 RYGG-DIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDE-DLQEAIEQAK 70 (84)
T ss_dssp EETT-EEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHH-HHHHHHHHHH
T ss_pred EECC-eeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHH-HHHHHHHHHH
Confidence 3343 4555 4444 5679999999999999983 232356777666 5555555543
No 53
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=33.07 E-value=96 Score=23.06 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=28.4
Q ss_pred ceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccC
Q 047919 35 GHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHP 77 (101)
Q Consensus 35 G~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~ 77 (101)
|+++++||.+-..+ .+-|...+|++...+++|.+.+
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccc
Confidence 67899999732333 4789999999999999997754
No 54
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.55 E-value=79 Score=25.39 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-.....-.+++++.|++.+ .+.+| ++.+.+...+..+++
T Consensus 31 ~P~Laii~vgd-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 31 VPGLAVILVGD-DP----------ASHTYVKMKAKACDRVGIYSI--THEMPSTISQKEILETIAMMNN 86 (281)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 45888999997 21 123345778889999999865 56776 677788888888764
No 55
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.50 E-value=2.5e+02 Score=22.66 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=40.9
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-...+--.+++++.|++.+ .+.+| ++.+.|+..+..+++
T Consensus 31 ~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (295)
T PRK14174 31 VPGLTVIIVGE-DP----------ASQVYVRNKAKSCKEIGMNST--VIELPADTTEEHLLKKIEDLNN 86 (295)
T ss_pred CCeEEEEEeCC-Ch----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 45888999997 21 133456777889999999875 57777 788899999888864
No 56
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.30 E-value=1.5e+02 Score=19.15 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (101)
++--++ ...=.+++++|.+|-.....-+.|.. +|- + .+... ++...|+..+..+
T Consensus 42 l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~akk-~~i--p--~~~~~~~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 42 LPSKIK--KADLVIVFTDYVSHNAMWKVKKAAKK-YGI--P--IIYSRSRGVSSLERALERL 96 (97)
T ss_pred HHHhcC--CCCEEEEEeCCcChHHHHHHHHHHHH-cCC--c--EEEECCCCHHHHHHHHHhh
Confidence 444455 35778999999999988776666554 442 2 34444 6788888877654
No 57
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.92 E-value=2.8e+02 Score=22.42 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=40.4
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
..+...+.||+ +. ..-.....-.+++++.|+... .+.+| ++.+.++..+..+++
T Consensus 33 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~t~~el~~~I~~lN~ 88 (297)
T PRK14168 33 VPGLVTILVGE-SP----------ASLSYVTLKIKTAHRLGFHEI--QDNQSVDITEEELLALIDKYNN 88 (297)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34888999997 21 123456778889999999865 56776 888999999988864
No 58
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=29.29 E-value=1.3e+02 Score=22.00 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHhh
Q 047919 59 PLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
|.|.+..-..-++.|.+.+ |.-++|.+...-+++...+++
T Consensus 19 P~iv~~~~~~l~~~g~~~e-GIFR~~g~~~~i~~l~~~l~~ 58 (196)
T cd04395 19 PLIVEVCCNIVEARGLETV-GIYRVPGNNAAISALQEELNR 58 (196)
T ss_pred ChHHHHHHHHHHHcCCCCc-cceeCCCcHHHHHHHHHHHhc
Confidence 5566555556678899887 999999999888888887764
No 59
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.15 E-value=2.8e+02 Score=22.26 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=40.7
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-.....-.+++++.|++.+ .+.+| ++.+.|...+..+++
T Consensus 31 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (285)
T PRK14191 31 RPKLAVILVGK-DP----------ASQTYVNMKIKACERVGMDSD--LHTLQENTTEAELLSLIKDLNT 86 (285)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44788888997 21 123456778889999999875 67888 778889998888864
No 60
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=28.29 E-value=55 Score=24.85 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=31.3
Q ss_pred ceeEEEEeccccCch--HHHHHHHHHHHHhCCccCCCceEee
Q 047919 45 ERKRFVVPISYLNHP--LFADLLKKAEEEFGFNHPMGGLTVP 84 (101)
Q Consensus 45 ~~~RfvVp~~~L~hP--~F~~LL~~aeEEfG~~~~~G~L~IP 84 (101)
+.=+|.+|++||..+ .|++|+...++.+.+.|-.+++.+-
T Consensus 23 s~l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~~ 64 (208)
T PF11876_consen 23 SYLSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAFN 64 (208)
T ss_pred cEEEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEEe
Confidence 356899999999872 4999999999988777655566554
No 61
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.76 E-value=3.3e+02 Score=21.96 Aligned_cols=54 Identities=19% Similarity=0.397 Sum_probs=41.3
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-.....-.+++++.|++.+ .+.+| ++.+.++..+..|++
T Consensus 26 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 26 APGLAVVLIGN-DP----------ASEVYVGMKVKKATDLGMVSK--AHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred CCcEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 45888999997 21 133456778889999999875 67887 788889999988864
No 62
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.50 E-value=3e+02 Score=23.13 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=39.1
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
..+...|.||+ +. ..-....--.+++|+.|++.. .+.+| ++.+++...+..+++
T Consensus 103 ~P~LaiIlvG~-dp----------aS~~Yv~~k~K~~e~~GI~~~--~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 103 VPGLAVILVGD-RK----------DSATYVRNKKKACDSVGINSF--EVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 44888899997 21 123456677889999999864 57777 677788888887764
No 63
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=26.40 E-value=1.2e+02 Score=19.83 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=18.4
Q ss_pred cCchHHHHHH----HHHHHHhCCccCCCceEe
Q 047919 56 LNHPLFADLL----KKAEEEFGFNHPMGGLTV 83 (101)
Q Consensus 56 L~hP~F~~LL----~~aeEEfG~~~~~G~L~I 83 (101)
-..|.|++.| ..+=+||||+-+ ..+.|
T Consensus 14 w~Dp~Fr~~Ll~DPraaL~e~G~~~P-~~~~i 44 (77)
T TIGR03793 14 WEDEAFKQALLTNPKEALEREGVQVP-AEVEV 44 (77)
T ss_pred HcCHHHHHHHHHCHHHHHHHhCCCCC-CceEE
Confidence 4578999865 444578899877 44444
No 64
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=26.13 E-value=78 Score=21.03 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=18.7
Q ss_pred CceEeeCcHHHHHHHHHHHhh
Q 047919 79 GGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 79 G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
..+.+-|+++.|.+++..|+.
T Consensus 65 ~~i~f~c~~e~L~~Li~~Lk~ 85 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKLKD 85 (95)
T ss_pred ceEEEEeCHHHHHHHHHHHHH
Confidence 489999999999999998864
No 65
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=26.11 E-value=77 Score=24.02 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=28.0
Q ss_pred eEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEeeCcHH
Q 047919 47 KRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKED 88 (101)
Q Consensus 47 ~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~ 88 (101)
.+-++..+-. .-.++.|.+++++-.|...+.-.+++||+..
T Consensus 33 ~g~I~d~~~~-~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~ 73 (239)
T TIGR02529 33 DGIVVDFLGA-VEIVRRLKDTLEQKLGIELTHAATAIPPGTI 73 (239)
T ss_pred CCeEEEhHHH-HHHHHHHHHHHHHHhCCCcCcEEEEECCCCC
Confidence 3444443333 2358889999988889876667899998653
No 66
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=26.04 E-value=89 Score=19.71 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=20.4
Q ss_pred ceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCce
Q 047919 45 ERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGL 81 (101)
Q Consensus 45 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L 81 (101)
..+|+.|++.= .-.+.++|++|-+.||++.+.+.|
T Consensus 5 ~~rr~~vkvtp--~~~l~~VL~eac~k~~l~~~~~~L 39 (65)
T PF11470_consen 5 NFRRFKVKVTP--NTTLNQVLEEACKKFGLDPSSYDL 39 (65)
T ss_dssp TS-EEEE---T--TSBHHHHHHHHHHHTT--GGG-EE
T ss_pred CCcEEEEEECC--CCCHHHHHHHHHHHcCCCccceEE
Confidence 34777777653 336889999999999998654433
No 67
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=25.94 E-value=1.2e+02 Score=20.23 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=25.3
Q ss_pred ceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEeeC
Q 047919 45 ERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPC 85 (101)
Q Consensus 45 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC 85 (101)
..+||=|-++ .+++|+.++.+-|....++++++|=+
T Consensus 12 r~~k~GV~A~-----sL~eL~~K~~~~l~l~~~~~~~~lvL 47 (80)
T cd06536 12 RQKQHGVAAS-----SLEELRIKACESLGFDSSSAPITLVL 47 (80)
T ss_pred CCeeEeEEcC-----CHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 4566666654 46899999999999985433566654
No 68
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=25.81 E-value=3.6e+02 Score=21.84 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=39.4
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
..+...|.||+ +. ..-....--.+++|+.|++.. .+.+| ++.+.+...+..|++
T Consensus 39 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 94 (299)
T PLN02516 39 VPGLAVVIVGS-RK----------DSQTYVNMKRKACAEVGIKSF--DVDLPENISEAELISKVHELNA 94 (299)
T ss_pred CCeEEEEEECC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34888899997 21 133456677888999999865 57776 677888888887764
No 69
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=24.86 E-value=24 Score=25.18 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=7.6
Q ss_pred CCceEEEEeecCceeEEE----------EeccccCchHHH
Q 047919 33 PKGHIAVYVGEMERKRFV----------VPISYLNHPLFA 62 (101)
Q Consensus 33 pkG~~~VyVG~~~~~Rfv----------Vp~~~L~hP~F~ 62 (101)
..||+|+.|-. +-.|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVPG--RAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE----SSSSEEEEEEEESS----S--------
T ss_pred Ccccceeeccc--hhhhhhhhccCCCcceeeEEEeceeee
Confidence 56999999953 33444 688888888644
No 70
>PF14317 YcxB: YcxB-like protein
Probab=23.37 E-value=1.5e+02 Score=16.55 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=23.9
Q ss_pred CCCceEEEEeecCceeEEEEeccccCchHHHHHH
Q 047919 32 VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLL 65 (101)
Q Consensus 32 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL 65 (101)
.-+.++-+|+++ ..-+.||-+.++.-...++.
T Consensus 27 e~~~~~~l~~~~--~~~~~iPk~~f~~~e~~~f~ 58 (62)
T PF14317_consen 27 ETKDYFYLYLGK--NQAFIIPKRAFSEEEKEEFR 58 (62)
T ss_pred EeCCEEEEEECC--CeEEEEEHHHCCHhHHHHHH
Confidence 456788889985 69999999999854444444
No 71
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=23.19 E-value=1.4e+02 Score=17.83 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=33.1
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCC-----ccCCCceEee-CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGF-----NHPMGGLTVP-CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~-----~~~~G~L~IP-C~~~~Fe~vl~~l~~ 99 (101)
+.|++.|.+- +|...++-..+..|.+-| ++||- ... ..|.|+ .+.+..+.+...|++
T Consensus 6 ~~g~~~v~~~--------~~~G~i~~~~l~~la~ia-~~yg~~~irlT~~-Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 6 GDGFYMVRIR--------IPGGRISAEQLRALAEIA-EKYGDGEIRLTTR-QNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp STTEEEEEEB---------GGGEEEHHHHHHHHHHH-HHHSTSEEEEETT-SCEEEEEEEGGGHHHHHHHHHH
T ss_pred CCeEEEEEEe--------CCCEEECHHHHHHHHHHH-HHhCCCeEEECCC-CeEEEeCCCHHHHHHHHHHHHc
Confidence 3455555554 666667555666666555 67772 222 345555 677777777776654
No 72
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.82 E-value=4.1e+02 Score=21.44 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=40.2
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+.+...|.||+ +. ..-...+.-.+++++.|++.+ .+.+| ++.+.+...+..+++
T Consensus 31 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (293)
T PRK14185 31 RPHLAAILVGH-DG----------GSETYVANKVKACEECGFKSS--LIRYESDVTEEELLAKVRELNQ 86 (293)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 45888999997 21 123456677889999999865 67888 778888888888864
No 73
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.25 E-value=45 Score=24.25 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=18.1
Q ss_pred HHHhCCccCC-CceEeeCcHHHHHHHHHH
Q 047919 69 EEEFGFNHPM-GGLTVPCKEDDFIDLTYR 96 (101)
Q Consensus 69 eEEfG~~~~~-G~L~IPC~~~~Fe~vl~~ 96 (101)
||||||+-++ -+=.|-|-.+.+++|-..
T Consensus 98 EEEFgiEIpd~dAdki~t~~da~~yI~~~ 126 (131)
T KOG1748|consen 98 EEEFGIEIPDEDADKIKTVRDAADYIADK 126 (131)
T ss_pred HHHhCCccCcchhhhhCCHHHHHHHHHhc
Confidence 8999998663 244566666666665543
No 74
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=21.92 E-value=1.3e+02 Score=17.24 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=35.9
Q ss_pred EEeecCceeEEEEeccccC--chHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHHh
Q 047919 39 VYVGEMERKRFVVPISYLN--HPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRLH 98 (101)
Q Consensus 39 VyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~ 98 (101)
+-||+ ++|-+.-..|. .|.|+.++.....+- .. ..+.++ .+...|+.++..+.
T Consensus 4 i~v~~---~~~~~h~~iL~~~s~~f~~~~~~~~~~~---~~-~~i~l~~~~~~~f~~~l~~ly 59 (90)
T smart00225 4 LVVGG---KKFKAHKAVLAACSPYFKALFSGDFKES---KK-SEIYLDDVSPEDFRALLEFLY 59 (90)
T ss_pred EEECC---EEEehHHHHHhhcCHHHHHHHcCCCccC---CC-CEEEecCCCHHHHHHHHHeec
Confidence 44553 67777776665 478899987654332 22 567776 68999999987653
No 75
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=20.74 E-value=1.5e+02 Score=19.13 Aligned_cols=27 Identities=26% Similarity=0.598 Sum_probs=17.3
Q ss_pred ceEEEEeecCceeEEEEeccccCchHHHHHHHHH
Q 047919 35 GHIAVYVGEMERKRFVVPISYLNHPLFADLLKKA 68 (101)
Q Consensus 35 G~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~a 68 (101)
-|+|+++++ + +..|| ..+.+.+||++-
T Consensus 25 rH~p~~i~~-~--~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 25 RHWPLFIEE-D--ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp TT--EEEET-T--EEEEE------HHHHHHHHHT
T ss_pred CccceEEcC-C--EEEec----CcHHHHHHHHHC
Confidence 488999997 3 78888 566677777763
No 76
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.44 E-value=2.4e+02 Score=20.41 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHhh
Q 047919 59 PLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
|.+...+-..=++.|.+.+ |.-++|.+...-+.+...+++
T Consensus 24 P~il~~~i~~l~~~g~~~e-GIFR~~g~~~~i~~l~~~~~~ 63 (195)
T cd04404 24 PPVVRETVEYLQAHALTTE-GIFRRSANTQVVKEVQQKYNM 63 (195)
T ss_pred ChHHHHHHHHHHHcCCCCC-CeeeCCCcHHHHHHHHHHHhC
Confidence 4554444444445888888 999999999999998888764
No 77
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=20.43 E-value=2.8e+02 Score=18.66 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=33.9
Q ss_pred ceeEEEEeccccCchHHHHHHHHHHHHhCCc----------cCCCceEeeCcHHHHHHHHH
Q 047919 45 ERKRFVVPISYLNHPLFADLLKKAEEEFGFN----------HPMGGLTVPCKEDDFIDLTY 95 (101)
Q Consensus 45 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~ 95 (101)
+.|||..|. -|.+.+|-++-+.=|-+. .++..|||.=+.+ ++.+..
T Consensus 10 ~~RRf~~~~----~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~e-L~d~~~ 65 (82)
T cd06397 10 DTRRIVFPD----IPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKE-LQDFYR 65 (82)
T ss_pred ceEEEecCC----CccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHH-HHHHHH
Confidence 789999998 899999999998888776 2334677776554 444443
No 78
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=20.39 E-value=1.6e+02 Score=20.07 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHhh
Q 047919 62 ADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 62 ~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
.+|-++.++-.|+.+| ||-.+.|..++...+.
T Consensus 45 ~~Ly~~lc~~~G~~~D------pCvldvfr~av~~a~~ 76 (93)
T PF11731_consen 45 EELYERLCALTGQRHD------PCVLDVFRCAVYFANG 76 (93)
T ss_pred HHHHHHHHHHcCCcCC------cHHHHHHHHHHHHHcC
Confidence 4667777787888887 8999999999987654
No 79
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=20.37 E-value=44 Score=28.03 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=18.0
Q ss_pred CCCCCceEEEEeecC-ceeEEEEec
Q 047919 30 AEVPKGHIAVYVGEM-ERKRFVVPI 53 (101)
Q Consensus 30 ~~vpkG~~~VyVG~~-~~~RfvVp~ 53 (101)
.-+|.|.|++|||-+ --+.|.||+
T Consensus 88 I~IP~gSfv~Y~G~d~ie~~~~vP~ 112 (361)
T COG1759 88 IFIPHGSFVAYVGYDGIENEFEVPM 112 (361)
T ss_pred EEecCCceEEEecchhhhhcccCcc
Confidence 678999999999962 235577764
Done!