Query 047919
Match_columns 101
No_of_seqs 121 out of 660
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nz0_B Potassium voltage-gated 64.4 7.2 0.00025 26.9 3.7 62 33-99 33-95 (140)
2 2al3_A TUG long isoform; TUG U 62.9 9 0.00031 25.1 3.7 41 38-81 12-52 (90)
3 1und_A Advillin, P92; actin bi 62.6 2.3 7.9E-05 23.7 0.7 20 54-73 1-20 (37)
4 2vkp_A BTB/POZ domain-containi 60.1 15 0.00052 22.4 4.4 57 37-98 11-71 (109)
5 2vpk_A Myoneurin; transcriptio 58.8 13 0.00046 23.2 4.0 50 37-97 25-79 (116)
6 1s1g_A Potassium voltage-gated 58.4 7 0.00024 26.3 2.7 62 33-99 11-73 (124)
7 3drz_A BTB/POZ domain-containi 57.2 31 0.0011 22.1 5.6 61 34-99 5-70 (107)
8 1r29_A B-cell lymphoma 6 prote 53.1 13 0.00045 23.6 3.3 53 37-97 32-88 (127)
9 3ga1_A Nucleus accumbens-assoc 52.7 26 0.00087 22.4 4.7 50 37-97 36-89 (129)
10 1nn7_A Potassium channel KV4.2 48.6 3.7 0.00013 26.8 0.0 58 37-99 2-60 (105)
11 2if5_A Zinc finger and BTB dom 46.7 50 0.0017 20.5 7.0 54 37-97 28-84 (120)
12 1pzq_A Erythronolide synthase; 44.2 19 0.00063 21.7 2.7 17 9-25 34-50 (60)
13 3b84_A Zinc finger and BTB dom 39.4 42 0.0014 21.1 4.1 50 37-97 27-79 (119)
14 3p2o_A Bifunctional protein fo 39.4 1.3E+02 0.0043 23.1 7.9 54 33-99 33-88 (285)
15 2xko_C PIPX, global nitrogen r 39.2 3.8 0.00013 27.1 -1.1 11 54-64 5-15 (89)
16 1yu8_X Villin; alpha helix, 3- 38.9 9.2 0.00031 23.8 0.7 21 53-73 30-50 (67)
17 3ngx_A Bifunctional protein fo 38.4 1.3E+02 0.0044 22.9 8.1 54 32-99 26-81 (276)
18 4b4u_A Bifunctional protein fo 35.6 1.3E+02 0.0045 23.3 7.0 55 32-99 52-108 (303)
19 1qzp_A Dematin; villin headpie 35.0 8 0.00027 24.0 -0.0 21 53-73 31-51 (68)
20 1ujs_A Actin-binding LIM prote 34.0 12 0.00042 24.4 0.8 21 53-73 45-65 (88)
21 3htm_A Speckle-type POZ protei 33.4 46 0.0016 21.7 3.6 55 37-98 37-94 (172)
22 2q81_A MIZ-1 protein; BTB/POZ 33.3 54 0.0018 20.5 3.8 49 37-97 30-81 (119)
23 2k6m_S Supervillin; SVHP, HP, 33.1 10 0.00034 23.5 0.2 21 53-73 30-50 (67)
24 2c2x_A Methylenetetrahydrofola 32.8 1.6E+02 0.0056 22.4 7.9 55 32-99 31-87 (281)
25 3ohu_A Transcription regulator 32.4 34 0.0012 21.5 2.8 52 37-97 35-90 (125)
26 1y74_B MLIN-2/CASK, peripheral 30.2 14 0.00049 20.8 0.5 20 54-73 26-49 (50)
27 2ccq_A P97, peptide N-glycanas 30.0 46 0.0016 21.5 3.1 44 56-99 46-97 (99)
28 3fkc_A Transcriptional regulat 29.5 53 0.0018 20.6 3.3 49 37-97 34-85 (116)
29 4dpo_A Conserved protein; stru 29.1 1.1E+02 0.0039 19.4 5.4 59 6-71 36-105 (119)
30 1buo_A POZ domain, protein (pr 29.0 62 0.0021 20.2 3.6 49 37-97 31-82 (121)
31 2bkf_A Zinc-finger protein NBR 28.5 1.1E+02 0.0038 19.7 4.7 51 40-95 13-71 (87)
32 1y6i_A Mg-chelatase cofactor G 28.4 5.1 0.00017 30.4 -2.1 30 30-62 200-229 (233)
33 2ppi_A Gigaxonin; BTB domain, 28.2 86 0.0029 20.4 4.3 57 37-98 50-109 (144)
34 3l07_A Bifunctional protein fo 27.5 2.1E+02 0.007 21.9 7.9 55 32-99 33-89 (285)
35 3n5b_B ASR0485 protein; PII, P 27.0 8.1 0.00028 26.5 -1.1 28 28-64 11-38 (112)
36 4eoz_A Speckle-type POZ protei 26.8 57 0.002 20.6 3.1 55 37-98 28-85 (145)
37 1z3x_A Putative cytidyltransfe 26.4 2.7 9.3E-05 32.0 -3.9 29 30-61 208-236 (238)
38 2aze_C Retinoblastoma-associat 25.7 59 0.002 18.8 2.6 32 3-34 11-42 (46)
39 1zav_U 50S ribosomal protein L 25.7 45 0.0015 17.4 2.0 13 61-73 18-30 (30)
40 1wy3_A Villin; structural prot 25.3 21 0.00072 19.4 0.6 17 56-72 1-17 (35)
41 1a4i_A Methylenetetrahydrofola 25.2 2.3E+02 0.008 21.7 8.0 54 33-99 35-90 (301)
42 2ihc_A Transcription regulator 24.2 75 0.0026 20.0 3.3 52 37-97 32-87 (124)
43 2yy9_A Zinc finger and BTB dom 23.4 61 0.0021 20.8 2.8 50 37-97 28-80 (135)
44 3kkf_A Putative antibiotic bio 23.3 1.3E+02 0.0046 18.2 4.7 58 6-70 16-85 (105)
45 3qli_A Coenzyme A transferase; 23.0 48 0.0016 27.0 2.6 44 30-74 402-454 (455)
46 4a26_A Putative C-1-tetrahydro 22.9 2.6E+02 0.0089 21.4 8.0 55 32-99 36-92 (300)
47 1vd2_A Protein kinase C, IOTA 22.8 1.5E+02 0.0053 18.8 5.0 28 45-76 16-43 (89)
48 3ezo_A Malonyl COA-acyl carrie 22.7 54 0.0019 24.6 2.7 41 34-75 9-49 (318)
49 1w8x_N Protein P31, protein C, 22.4 17 0.00058 25.0 -0.2 28 33-62 86-123 (126)
50 3kvt_A Potassium channel prote 22.4 17 0.00057 24.1 -0.2 59 35-99 5-66 (115)
51 1wj6_A KIAA0049 protein, RSGI 22.1 1.5E+02 0.0052 19.6 4.5 52 40-96 21-80 (101)
52 4a5o_A Bifunctional protein fo 21.5 2.7E+02 0.0094 21.2 7.5 55 32-99 34-90 (286)
53 1hv2_A Elongin C, ELC1; protei 21.3 1.6E+02 0.0054 18.4 5.2 51 45-100 12-64 (99)
54 1zo0_A ODC-AZ, ornithine decar 21.2 56 0.0019 22.5 2.3 39 35-76 36-78 (126)
55 2lmc_A Bacterial RNA polymeras 21.1 62 0.0021 20.9 2.3 14 61-74 56-69 (84)
56 3pmi_A PWWP domain-containing 20.4 31 0.001 24.2 0.8 29 45-73 47-78 (134)
57 1b0a_A Protein (fold bifunctio 20.3 2.9E+02 0.01 21.1 8.3 55 32-99 32-88 (288)
58 1dd4_C 50S ribosomal protein L 20.2 65 0.0022 17.9 2.0 17 61-77 18-34 (40)
59 2z8h_A Transcription regulator 20.2 1.3E+02 0.0045 19.1 3.9 52 37-97 39-94 (138)
60 3hqi_A Speckle-type POZ protei 20.1 1E+02 0.0035 22.3 3.7 55 37-98 177-234 (312)
No 1
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=64.39 E-value=7.2 Score=26.89 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=45.4
Q ss_pred CCceEEEEeecCceeEEEEecccc-CchHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYL-NHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
....+.+-||. .||.+..+-| ++|. .+|..++...-++.+.|.+-|..+...|++||..+..
T Consensus 33 ~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~ 95 (140)
T 2nz0_B 33 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 95 (140)
T ss_dssp CCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhc
Confidence 45788888996 8999988766 3342 1333344444565566999999999999999998864
No 2
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=62.90 E-value=9 Score=25.10 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=29.7
Q ss_pred EEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCce
Q 047919 38 AVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGL 81 (101)
Q Consensus 38 ~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L 81 (101)
.+++.. ..+|+.|.+. ..-.+.++|++|.+.||++.+...|
T Consensus 12 v~Vl~~-n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 12 VSVLAP-NGRRHTVKVT--PSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp EEEECT-TSCEEEECCC--TTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred EEEEcC-CCcEEEEEEC--CCCCHHHHHHHHHHHhCCChhhCeE
Confidence 334443 5789999883 3446889999999999998664444
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=62.65 E-value=2.3 Score=23.66 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=17.5
Q ss_pred cccCchHHHHHHHHHHHHhC
Q 047919 54 SYLNHPLFADLLKKAEEEFG 73 (101)
Q Consensus 54 ~~L~hP~F~~LL~~aeEEfG 73 (101)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999983
No 4
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=60.11 E-value=15 Score=22.44 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=38.9
Q ss_pred EEEEeec-CceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHHh
Q 047919 37 IAVYVGE-MERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRLH 98 (101)
Q Consensus 37 ~~VyVG~-~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~ 98 (101)
+.+.||+ ++.++|-+.-..| ..|.|++++...-.|-. ..|.|| .+.+.|+.++..+-
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-----~~i~l~~~~~~~f~~~l~~iY 71 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-----SEIHIPDVEPAAFLILLKYMY 71 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-----CEEEETTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-----CeEEeCCCCHHHHHHHHHHHc
Confidence 4455664 2358899988888 68999999975433322 468887 68999999988763
No 5
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=58.81 E-value=13 Score=23.16 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=38.0
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee---CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP---CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP---C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..| ..|.|++++... . + ..+.|+ .+.+.|+.++..+
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHHHH
Confidence 4456664 6888887777 579999998654 2 3 578888 7899999998876
No 6
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=58.40 E-value=7 Score=26.34 Aligned_cols=62 Identities=23% Similarity=0.191 Sum_probs=44.8
Q ss_pred CCceEEEEeecCceeEEEEeccccC-chHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLN-HPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~-hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
....+.+-||. .||.+..+-|. +|. .+|..++...-++.+.|.+-|..+...|+.||..+..
T Consensus 11 ~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~ 73 (124)
T 1s1g_A 11 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 73 (124)
T ss_dssp -CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhc
Confidence 45678888996 89999887763 332 2333344444455566999999999999999998864
No 7
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=57.22 E-value=31 Score=22.05 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=43.3
Q ss_pred CceEEEEeecCceeEEEEeccccC-ch--HHHHHHHHHHHHhC--CccCCCceEeeCcHHHHHHHHHHHhh
Q 047919 34 KGHIAVYVGEMERKRFVVPISYLN-HP--LFADLLKKAEEEFG--FNHPMGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 34 kG~~~VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG--~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
...+.+-||. ++|.+..+-|. +| .|..+... ..++. .+. .|.+-|.++...|++|+..+..
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~-~~~~~~~~d~-~~~~fiDRdp~~F~~IL~~lr~ 70 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDE-TGAYLIDRDPTYFGPVLNYLRH 70 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTT-CGGGGGGBCT-TSCEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhc-CCCCCcCCCC-CceEEecCChHHHHHHHHHhCC
Confidence 4567888996 89999988775 44 45555432 12332 333 4899999999999999988753
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=53.12 E-value=13 Score=23.58 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=40.2
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEe-e-CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTV-P-CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~I-P-C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .. ..|.| + .+.+.|+.++..+
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHHHH
Confidence 4456664 6888887777 689999999765444 23 68999 4 7899999999876
No 9
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=52.66 E-value=26 Score=22.36 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=38.5
Q ss_pred EEEEeecCceeEEEEeccccC--chHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYLN--HPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..|. .|.|++++... .. ..|.|| .+.+.|+.++..+
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHHHH
Confidence 4666774 67877766664 68999998775 23 689996 8999999999876
No 10
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=48.60 E-value=3.7 Score=26.78 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=38.4
Q ss_pred EEEEeecCceeEEEEecccc-CchHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHhh
Q 047919 37 IAVYVGEMERKRFVVPISYL-NHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
+.+-||. .||.+..+-| ++|. .+|..++...-++.+.|.+-|..+...|++||..+..
T Consensus 2 V~LNVGG---~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~ 60 (105)
T 1nn7_A 2 IVLNVSG---TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60 (105)
T ss_dssp EEEEETT---EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhc
Confidence 4566885 8888877655 2332 1232333333444455899999999999999998764
No 11
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=46.67 E-value=50 Score=20.47 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=37.5
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..| ..|.|++++...-.|- .. ..|.|+ .+.+.|+.++..+
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e~---~~-~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVVD---QQ-NVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCcccc---CC-ceEEeCCCCHHHHHHHHHHH
Confidence 4456664 7888887777 4899999987543322 23 578898 6899999998865
No 12
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=44.17 E-value=19 Score=21.67 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=13.2
Q ss_pred hHHHHHHHHhhhhhccc
Q 047919 9 IQNAKQILKKHNNHALS 25 (101)
Q Consensus 9 ~~~~k~~l~r~~s~~~~ 25 (101)
=|++.++||||.|....
T Consensus 34 gqrlesllrrwnsrrad 50 (60)
T 1pzq_A 34 GQRLESLLRRWNSRRAD 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccC
Confidence 36889999999887543
No 13
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=39.42 E-value=42 Score=21.05 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=37.0
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..| ..|.|++++... . + +.|.|| .+.+.|+.++..+
T Consensus 27 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~-----~--~-~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 27 ATLDVGG---LVFKAHWSVLACCSHFFQSLYGDG-----S--G-GSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTT-----T--C-CCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHhhcCHHHHHHHCCC-----C--C-CeEEeCCCCHHHHHHHHHHH
Confidence 4455664 6788877777 479999988652 2 3 679998 6788999998876
No 14
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=39.41 E-value=1.3e+02 Score=23.05 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=40.4
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
..|...|.||+ +. . .-....--.++.++.|++.. .+.+| ++.+++...+..++.
T Consensus 33 ~P~Lavilvg~-dp------a----S~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN~ 88 (285)
T 3p2o_A 33 ESCLAVILVGD-NP------A----SQTYVKSKAKACEECGIKSL--VYHLNENITQNELLALINTLNH 88 (285)
T ss_dssp CCEEEEEEESC-CH------H----HHHHHHHHHHHHHHHTCEEE--EEEECTTCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCC-CH------H----HHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 56888999997 21 0 11235667889999999875 68889 888889888888774
No 15
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=39.16 E-value=3.8 Score=27.10 Aligned_cols=11 Identities=64% Similarity=1.099 Sum_probs=8.3
Q ss_pred cccCchHHHHH
Q 047919 54 SYLNHPLFADL 64 (101)
Q Consensus 54 ~~L~hP~F~~L 64 (101)
.|||||.|--|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999988543
No 16
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=38.87 E-value=9.2 Score=23.76 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=19.0
Q ss_pred ccccCchHHHHHHHHHHHHhC
Q 047919 53 ISYLNHPLFADLLKKAEEEFG 73 (101)
Q Consensus 53 ~~~L~hP~F~~LL~~aeEEfG 73 (101)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 30 ENHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGGSCHHHHHHHHSSCHHHHH
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999984
No 17
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=38.44 E-value=1.3e+02 Score=22.91 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=39.6
Q ss_pred CCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 32 VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 32 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
...|...|.||+ +. . .-....--.++.++.|+ .. .+.+| ++.+++...+..+|+
T Consensus 26 ~~P~Lavilvg~-dp------a----S~~Yv~~k~k~~~~~Gi-~~--~~~lp~~~s~~ell~~I~~lN~ 81 (276)
T 3ngx_A 26 LEPSLKLIQIGD-NE------A----ASIYARAKIRRGKKIGI-AV--DLEKYDDISMKDLLKRIDDLAK 81 (276)
T ss_dssp CCCEEEEEEESC-CH------H----HHHHHHHHHHHHHHHTC-EE--EEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCC-CH------H----HHHHHHHHHHHHHHCCe-EE--EEECCCCCCHHHHHHHHHHHcC
Confidence 456889999997 21 0 11245677889999999 54 68888 778888888887764
No 18
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=35.55 E-value=1.3e+02 Score=23.29 Aligned_cols=55 Identities=11% Similarity=0.244 Sum_probs=40.6
Q ss_pred CCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 32 VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 32 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
.+.|...|.||+ +. . .-....--.++.+|.|+... .+.+| ++.+++...+..||+
T Consensus 52 ~~P~LavIlVG~-dp------a----S~~Yv~~K~k~c~~vGi~s~--~~~lp~~~se~ell~~I~~LN~ 108 (303)
T 4b4u_A 52 RTPILATILVGD-DG------A----SATYVRMKGNACRRVGMDSL--KIELPQETTTEQLLAEIEKLNA 108 (303)
T ss_dssp CCCEEEEEEESC-CH------H----HHHHHHHHHHHHHHTTCEEE--EEEECTTCCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCC-CH------H----HHHHHHHHHHHHHHcCCeEE--EEecCccCCHHHHHHHHHHhcC
Confidence 467889999998 21 0 11244667889999999875 68888 788888888888775
No 19
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=35.05 E-value=8 Score=23.98 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.9
Q ss_pred ccccCchHHHHHHHHHHHHhC
Q 047919 53 ISYLNHPLFADLLKKAEEEFG 73 (101)
Q Consensus 53 ~~~L~hP~F~~LL~~aeEEfG 73 (101)
-.||+.-.|++++.++.+||-
T Consensus 31 E~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 31 ERHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGGBCHHHHHHHSSSCHHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 479999999999999999983
No 20
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=33.96 E-value=12 Score=24.36 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=19.2
Q ss_pred ccccCchHHHHHHHHHHHHhC
Q 047919 53 ISYLNHPLFADLLKKAEEEFG 73 (101)
Q Consensus 53 ~~~L~hP~F~~LL~~aeEEfG 73 (101)
-.||+.-.|++++.|+.+||-
T Consensus 45 E~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 45 ERHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGGSCTTHHHHHHSSCHHHHT
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999985
No 21
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=33.40 E-value=46 Score=21.70 Aligned_cols=55 Identities=15% Similarity=0.323 Sum_probs=39.4
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHHh
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRLH 98 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~ 98 (101)
+.+.||+ ++|-+.-..| ..|.|+.++...-.| ..+ ..|.|| .+.+.|+.++..+-
T Consensus 37 v~l~v~~---~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~~l~~~Y 94 (172)
T 3htm_A 37 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHEMEE---SKK-NRVEINDVEPEVFKEMMCFIY 94 (172)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHSCCCG---GGT-TEEEECSSCHHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHHHcCHHHHHHHccCccc---cCC-CeEEecCCCHHHHHHHHHHHh
Confidence 5666774 6788887777 479999999843111 122 578888 68999999988763
No 22
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=33.33 E-value=54 Score=20.52 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=36.6
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEeeC-cHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVPC-KEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IPC-~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..| ..|.|++++.. ++ ..+.++- +.+.|+.++..+
T Consensus 30 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~~~ 81 (119)
T 2q81_A 30 CTFVVDG---VHFKAHKAVLAACSEYFKMLFVD--------QK-DVVHLDISNAAGLGQVLEFM 81 (119)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHH--------CC-SGGGGGGCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEehhHHHHHHcCHHHHHHHcC--------CC-CEEEeCCCCHHHHHHHHHHH
Confidence 4456664 7888888877 48999999974 23 5678875 788999998765
No 23
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=33.07 E-value=10 Score=23.53 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.3
Q ss_pred ccccCchHHHHHHHHHHHHhC
Q 047919 53 ISYLNHPLFADLLKKAEEEFG 73 (101)
Q Consensus 53 ~~~L~hP~F~~LL~~aeEEfG 73 (101)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHHT
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 479999999999999999985
No 24
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=32.75 E-value=1.6e+02 Score=22.40 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=40.4
Q ss_pred CCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 32 VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 32 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
...|...|.||+ +.. .-....--.++.||.|+... .+.+| ++.+++...+..+|+
T Consensus 31 ~~P~Lavilvg~-dpa----------s~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~i~~lN~ 87 (281)
T 2c2x_A 31 RTPGLGTILVGD-DPG----------SQAYVRGKHADCAKVGITSI--RRDLPADISTATLNETIDELNA 87 (281)
T ss_dssp CCCEEEEEEESC-CHH----------HHHHHHHHHHHHHHHTCEEE--EEEECTTCCHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCC-Chh----------hHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHhcC
Confidence 346888999997 210 22345667788999999975 68888 678888888887764
No 25
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=32.35 E-value=34 Score=21.47 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=37.6
Q ss_pred EEEEeecCceeEEEEeccccC--chHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYLN--HPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..|. .|.|++++.....| . ..|.|| .+.+.|+.++..+
T Consensus 35 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~-~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 35 VTLIVER---KEFRAHRAVLAACSEYFWQALVGQTKN-----D-LVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTCCCS-----S-CEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEechHHHHHHcCHHHHHHhcCCCCC-----C-cEEEeCCCCCHHHHHHHHHhH
Confidence 4566764 67777766664 68899998654322 2 578887 7999999998875
No 26
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=30.23 E-value=14 Score=20.84 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=15.3
Q ss_pred cccCchHHHHHHHH----HHHHhC
Q 047919 54 SYLNHPLFADLLKK----AEEEFG 73 (101)
Q Consensus 54 ~~L~hP~F~~LL~~----aeEEfG 73 (101)
..|+.|.|++||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 57889999999974 456664
No 27
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=30.03 E-value=46 Score=21.51 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=31.6
Q ss_pred cCchHHHHHHHHH------HHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 56 LNHPLFADLLKKA------EEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 56 L~hP~F~~LL~~a------eEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
+++|.|++=+... =+..||...++.+.+| ++....+.+...|.+
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~~ 97 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAI 97 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHHh
Confidence 5688888865433 2457999887889998 677777777666653
No 28
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=29.50 E-value=53 Score=20.61 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=35.0
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..| ..|.|++++... . ..|.++ .+.+.|+.++..+
T Consensus 34 v~l~v~~---~~f~aHk~vLaa~S~~F~~~f~~~--------~-~~i~l~~~~~~~f~~~l~~~ 85 (116)
T 3fkc_A 34 VTVIVED---RKFRAHKNILSASSTYFHQLFSVA--------G-QVVELSFIRAEIFAEILNYI 85 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHTTSC--------C-SEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehhHHHHHHcCHHHHHHHcCC--------C-CEEEeCCCCHHHHHHHHHhh
Confidence 4556664 6777766555 458888887542 2 578887 7999999998875
No 29
>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}
Probab=29.06 E-value=1.1e+02 Score=19.39 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHhhhhhcccCCCCCCCCCceEEEEeec--CceeEEEEec---------cccCchHHHHHHHHHHHH
Q 047919 6 PSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGE--MERKRFVVPI---------SYLNHPLFADLLKKAEEE 71 (101)
Q Consensus 6 ~~~~~~~k~~l~r~~s~~~~~~~~~~vpkG~~~VyVG~--~~~~RfvVp~---------~~L~hP~F~~LL~~aeEE 71 (101)
|+....+.+.++.....++. ..||+-..+.. ++..+|++-. .+++.|.|+++++..++=
T Consensus 36 pg~~~~f~~~l~~~~~~~r~-------EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH~~s~~f~~~~~~~~~l 105 (119)
T 4dpo_A 36 PEKVQEFMNLCKSLIEETLK-------EEGCIDYGVYQELENPEILTMLEEWKDEGSLDQHIRSDHFKEIFPLLSEC 105 (119)
T ss_dssp TTTHHHHHHHHHHHHHHHHT-------STTEEEEEEEEETTEEEEEEEEEEESSHHHHHHHHTSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHhc-------CCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHH
Confidence 45555666666665544442 57998887764 4678888854 467789999999888753
No 30
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=29.02 E-value=62 Score=20.21 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=36.0
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..| ..|.|++++.. .. ..+.|+ .+.+.|+.++..+
T Consensus 31 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~~~ 82 (121)
T 1buo_A 31 VVIMVDS---QEFHAHRTVLACTSKMFEILFHR--------NS-QHYTLDFLSPKTFQQILEYA 82 (121)
T ss_dssp EEEEESS---CEEEECHHHHHHHCHHHHHHTTS--------CC-SEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehhHHHHhhcCHHHHHHHcC--------CC-cEEEeCCCCHHHHHHHHHhh
Confidence 4455664 6787777766 67899998853 12 578888 7899999998765
No 31
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=28.51 E-value=1.1e+02 Score=19.72 Aligned_cols=51 Identities=12% Similarity=0.273 Sum_probs=37.2
Q ss_pred EeecCceeEEEEeccccCchHHHHHHHHHHHHhCC--------ccCCCceEeeCcHHHHHHHHH
Q 047919 40 YVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGF--------NHPMGGLTVPCKEDDFIDLTY 95 (101)
Q Consensus 40 yVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~--------~~~~G~L~IPC~~~~Fe~vl~ 95 (101)
|-| +.+||. ++++..|.+.+|-.+-..-||+ |.++-.++|.=+.+ |+..+.
T Consensus 13 f~g--e~~rf~--vs~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E-~eEAlk 71 (87)
T 2bkf_A 13 FKN--EIQSFL--VSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGE-YEEALK 71 (87)
T ss_dssp ETT--EEEEEE--ESCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHH-HHHHHH
T ss_pred EcC--CeeEEE--eccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHH-HHHHHH
Confidence 445 578875 5789999999999999999995 34455777776654 444444
No 32
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=28.41 E-value=5.1 Score=30.41 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=20.5
Q ss_pred CCCCCceEEEEeecCceeEEEEeccccCchHHH
Q 047919 30 AEVPKGHIAVYVGEMERKRFVVPISYLNHPLFA 62 (101)
Q Consensus 30 ~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~ 62 (101)
..+|+||+|..-.- -.- -+-.+.|+||.|.
T Consensus 200 l~AP~GHLP~~~~l-rG~--~l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQL-RGV--RVAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCT-TCT--HHHHHHHTSTHHH
T ss_pred CCCCCCCCCCcccc-chH--HHHHHHHCCcccc
Confidence 46899999986521 011 1567889999884
No 33
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=28.17 E-value=86 Score=20.42 Aligned_cols=57 Identities=7% Similarity=0.013 Sum_probs=38.3
Q ss_pred EEEEeecCceeEEEEeccccC--chHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHHh
Q 047919 37 IAVYVGEMERKRFVVPISYLN--HPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRLH 98 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~ 98 (101)
+.+.||+ ++|-+.-..|. .|.|++++...-.|-. ... ..|.|+ .+.+.|+.++..+-
T Consensus 50 v~l~v~~---~~f~aHk~vLaa~S~yF~~mf~~~~~e~e-~~~-~~I~l~~v~~~~f~~lL~fiY 109 (144)
T 2ppi_A 50 AHLVLDG---EEIPVQKNILAAASPYIRTKLNYNPPKDD-GST-YKIELEGISVMVMREILDYIF 109 (144)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHHCC------CC-CEEECCSSCHHHHHHHHHHHT
T ss_pred eEEEECC---EEEehHHHHHHHcCHHHHHHHcCCCcccc-CCC-cEEEeCCCCHHHHHHHHHHHh
Confidence 4455664 78888777774 8999999975322110 112 679998 58999999998763
No 34
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=27.47 E-value=2.1e+02 Score=21.86 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=40.1
Q ss_pred CCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 32 VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 32 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
...|...|.||+ +. . .-....--.++.++.|++.. .+.+| ++.+++...+..++.
T Consensus 33 ~~P~Lavilvg~-dp------a----S~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN~ 89 (285)
T 3l07_A 33 ITPKLVAIIVGN-DP------A----SKTYVASKEKACAQVGIDSQ--VITLPEHTTESELLELIDQLNN 89 (285)
T ss_dssp CCCEEEEEEESC-CH------H----HHHHHHHHHHHHHHHTCEEE--EEEECTTCCHHHHHHHHHHHHT
T ss_pred CCceEEEEEECC-CH------H----HHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 356889999997 21 0 11344677889999999875 68887 778888888887764
No 35
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=27.00 E-value=8.1 Score=26.46 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=8.9
Q ss_pred CCCCCCCceEEEEeecCceeEEEEeccccCchHHHHH
Q 047919 28 QPAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADL 64 (101)
Q Consensus 28 ~~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~L 64 (101)
++.-||+|..---+. +-.|||||.|--|
T Consensus 11 ~~~~~~~~~~~~~ms---------~E~YLNHPTFGLL 38 (112)
T 3n5b_B 11 SSGLVPRGSHMNPEN---------SETYINHPTWGLL 38 (112)
T ss_dssp ------------------------CCCEEEETTTEEE
T ss_pred cCCcccCCccCCCcc---------hhhhccCCccchh
Confidence 345677775432222 2239999998543
No 36
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=26.83 E-value=57 Score=20.59 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=38.3
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHHh
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRLH 98 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~ 98 (101)
+.+.||+ +.|-+.-..| ..|.|++++...-.|- .+ +.+.+| .+.+.|+.++..+-
T Consensus 28 v~l~v~~---~~~~~Hk~iL~~~S~~F~~~f~~~~~e~---~~-~~i~l~~~~~~~~~~~l~~~Y 85 (145)
T 4eoz_A 28 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHEMEES---KK-NRVEINDVEPEVFKEMMCFIY 85 (145)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHSSSHHH---HH-TEEEECSSCHHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeehHHHHHcCHHHHHHHcCCCcCC---CC-ceEEecCCCHHHHHHHHHhhc
Confidence 4566774 6687776666 4799999997532221 12 578887 78999999988763
No 37
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=26.44 E-value=2.7 Score=32.03 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=19.7
Q ss_pred CCCCCceEEEEeecCceeEEEEeccccCchHH
Q 047919 30 AEVPKGHIAVYVGEMERKRFVVPISYLNHPLF 61 (101)
Q Consensus 30 ~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F 61 (101)
..+|+||+|..-. -+=.-+-.+.|+||.|
T Consensus 208 l~AP~GHLP~~~~---lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQ---LRGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCC---TTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCcc---cccHHHHHHHHcCccc
Confidence 4689999998642 1112255678899977
No 38
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=25.74 E-value=59 Score=18.80 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=20.1
Q ss_pred ccchhhhHHHHHHHHhhhhhcccCCCCCCCCC
Q 047919 3 IRLPSVIQNAKQILKKHNNHALSRNQPAEVPK 34 (101)
Q Consensus 3 ~~~~~~~~~~k~~l~r~~s~~~~~~~~~~vpk 34 (101)
|..++.+|+..||+--+...-+........||
T Consensus 11 Fg~~~rFQKINqMvnss~r~~KR~~d~~~apK 42 (46)
T 2aze_C 11 FGTSEKFQKINQMVCNSDRVLKRSAEGSNPPK 42 (46)
T ss_dssp TTHHHHHHHHHHHHHCCTTCCCCCSTTCCCCC
T ss_pred hCchHHHHHHHHHHhhhhHhhhhhccCCCCCC
Confidence 66788999999998665444333333344444
No 39
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=25.70 E-value=45 Score=17.43 Aligned_cols=13 Identities=54% Similarity=1.004 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhC
Q 047919 61 FADLLKKAEEEFG 73 (101)
Q Consensus 61 F~~LL~~aeEEfG 73 (101)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899998
No 40
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=25.32 E-value=21 Score=19.44 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=13.6
Q ss_pred cCchHHHHHHHHHHHHh
Q 047919 56 LNHPLFADLLKKAEEEF 72 (101)
Q Consensus 56 L~hP~F~~LL~~aeEEf 72 (101)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56677888888888887
No 41
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=25.18 E-value=2.3e+02 Score=21.74 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=40.4
Q ss_pred CCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 33 PKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
..|...|.||+ +.. ......--.++.||.|+... .+.+| ++.++++..+..||+
T Consensus 35 ~P~LavilvG~-dpa----------S~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN~ 90 (301)
T 1a4i_A 35 TPRLAILQVGN-RDD----------SNLYINVKLKAAEEIGIKAT--HIKLPRTTTESEVMKYITSLNE 90 (301)
T ss_dssp CCEEEEEEESC-CHH----------HHHHHHHHHHHHHHHTCEEE--EEEECTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCC-Chh----------HHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHhcC
Confidence 46888999997 210 22455677888999999975 68888 677888888888864
No 42
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=24.19 E-value=75 Score=19.96 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=35.7
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..| ..|.|++++.....| . ..+.+| .+...|+.++..+
T Consensus 32 v~l~v~~---~~~~aHk~vLaa~S~yF~~mf~~~~~e-----~-~~i~l~~~v~~~~f~~lL~~i 87 (124)
T 2ihc_A 32 VTIFVEG---QRFRAHRSVLAACSSYFHSRIVGQADG-----E-LNITLPEEVTVKGFEPLIQFA 87 (124)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTC--------C-EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEecHHHHHHHcCHHHHHHHcCCCCC-----C-ceEeecCCcCHHHHHHHHHHh
Confidence 3455664 6787777777 579999998643222 2 468885 7888999988765
No 43
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=23.41 E-value=61 Score=20.84 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=34.7
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..| ..|.|++++.... + ..|.|+ .+.+.|+.++..+
T Consensus 28 v~l~v~~---~~f~aHk~vLaa~S~yF~~mf~~~~-------~-~~i~l~~~~~~~f~~lL~fi 80 (135)
T 2yy9_A 28 ATLDVGG---LVFKAHWSVLACCSHFFQRIYGDGT-------G-GSVVLPAGFAEIFGLLLDFF 80 (135)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHTCC------------CCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC---EEEehHHHHHHHhCHHHHHHHcCCC-------C-CeEEeCCCCHHHHHHHHHHH
Confidence 4456664 6787777666 4788998876432 2 579998 6788999998865
No 44
>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}
Probab=23.28 E-value=1.3e+02 Score=18.24 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=38.2
Q ss_pred hhhhHHHHHHHHhhhhhc-ccCCCCCCCCCceEEEEeec--CceeEEEEec---------cccCchHHHHHHHHHHH
Q 047919 6 PSVIQNAKQILKKHNNHA-LSRNQPAEVPKGHIAVYVGE--MERKRFVVPI---------SYLNHPLFADLLKKAEE 70 (101)
Q Consensus 6 ~~~~~~~k~~l~r~~s~~-~~~~~~~~vpkG~~~VyVG~--~~~~RfvVp~---------~~L~hP~F~~LL~~aeE 70 (101)
|+....+.+.++.....+ + ...||+..++.. ++..+|++-- .+++.|.|+++.+...+
T Consensus 16 pg~~~~f~~~l~~~~~~s~r-------~EpGcl~y~~~~~~~~p~~~~~~E~w~d~~a~~~H~~s~~~~~~~~~~~~ 85 (105)
T 3kkf_A 16 PERLEEYNAYLKEEIEVSMR-------LEPGVLVLYAVAEKERPNHVTILEIYADEAAYKSHIATPHFKKYKEGTLD 85 (105)
T ss_dssp GGGHHHHHHHHHHHHHHHHH-------HCTTEEEEEEEECSSCTTEEEEEEEESSHHHHHHHHTSHHHHHHHHHHGG
T ss_pred cCcHHHHHHHHHHHHHHHHh-------CCCCcEEEEEEEeCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHH
Confidence 455556666666654333 3 257898877654 3567888754 46778888888887754
No 45
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=22.97 E-value=48 Score=27.04 Aligned_cols=44 Identities=27% Similarity=0.355 Sum_probs=30.7
Q ss_pred CCCCCceEEEEeec---------CceeEEEEeccccCchHHHHHHHHHHHHhCC
Q 047919 30 AEVPKGHIAVYVGE---------MERKRFVVPISYLNHPLFADLLKKAEEEFGF 74 (101)
Q Consensus 30 ~~vpkG~~~VyVG~---------~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~ 74 (101)
.+.|++++-+.|.| .-++|-.-=++ +-||.|++.|.+++++.|+
T Consensus 402 vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 402 VTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp CSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred cccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 45688888777765 12334333334 8899999999998888764
No 46
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=22.92 E-value=2.6e+02 Score=21.44 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=40.2
Q ss_pred CCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 32 VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 32 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
...|...|.||+ +. ..-....--.++.+|.|++.. .+.+| ++.+++...+..+|.
T Consensus 36 ~~P~Lavilvg~-dp----------aS~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN~ 92 (300)
T 4a26_A 36 RVPGLASIIVGQ-RM----------DSKKYVQLKHKAAAEVGMASF--NVELPEDISQEVLEVNVEKLNN 92 (300)
T ss_dssp CCCEEEEEEESC-CH----------HHHHHHHHHHHHHHHTTCEEE--EEEECTTCCHHHHHHHHHHHHT
T ss_pred CCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHhcC
Confidence 356889999997 21 012345667889999999875 67886 778888888888764
No 47
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=22.76 E-value=1.5e+02 Score=18.79 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=23.8
Q ss_pred ceeEEEEeccccCchHHHHHHHHHHHHhCCcc
Q 047919 45 ERKRFVVPISYLNHPLFADLLKKAEEEFGFNH 76 (101)
Q Consensus 45 ~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~ 76 (101)
+-.|+-||. ...|++|.++-.+-|++..
T Consensus 16 di~~~~v~~----~i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 16 DIMITHFEP----SISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp CEEEEEECT----TCCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCC----CCCHHHHHHHHHHHhCCCC
Confidence 678888887 4689999999999999853
No 48
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=22.72 E-value=54 Score=24.55 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=26.7
Q ss_pred CceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCc
Q 047919 34 KGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFN 75 (101)
Q Consensus 34 kG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~ 75 (101)
....-|+-|.+ .+..=.--+.+++|.|++.++++.+.+|++
T Consensus 9 ~~~~f~F~GQG-sQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 9 MKFAFVFPGQG-SQSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CCEEEEECCTT-CCCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CCeEEEECCcc-hhhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 34556677762 222112223338999999999999999875
No 49
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=22.41 E-value=17 Score=24.98 Aligned_cols=28 Identities=32% Similarity=0.607 Sum_probs=17.1
Q ss_pred CCceEEEEeecCceeEEE----------EeccccCchHHH
Q 047919 33 PKGHIAVYVGEMERKRFV----------VPISYLNHPLFA 62 (101)
Q Consensus 33 pkG~~~VyVG~~~~~Rfv----------Vp~~~L~hP~F~ 62 (101)
..||+|+.|-. +-.|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPG--RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECC--SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred Ccccceeeccc--hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 56999999963 44444 688899888644
No 50
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=22.35 E-value=17 Score=24.06 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=39.9
Q ss_pred ceEEEEeecCceeEEEEeccccC-ch--HHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHhh
Q 047919 35 GHIAVYVGEMERKRFVVPISYLN-HP--LFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK 99 (101)
Q Consensus 35 G~~~VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (101)
..+.+-||. .||....+-|. +| .+..|.. .-..++.+.|.+-|.-+...|..||..+..
T Consensus 5 ~~V~LNVGG---~~f~T~~~TL~~~P~s~L~~l~~---~~~~~~~~~g~~FiDRdp~~F~~ILnylR~ 66 (115)
T 3kvt_A 5 NRVIINVGG---IRHETYKATLKKIPATRLSRLTE---GMLNYDPVLNEYFFDRHPGVFAQIINYYRS 66 (115)
T ss_dssp CEEEEEETT---EEEEEEHHHHTTSCSSTTTTCCT---TSTTEETTTTEEEECSCTTTHHHHHHHHHH
T ss_pred CEEEEEECC---EEEEecHHHHhcCCCccHHHHhc---CCCCCCCCCCcEEEecChHHHHHHHHHhcC
Confidence 467788986 89998876554 23 1222222 123355556899999999999999988753
No 51
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.08 E-value=1.5e+02 Score=19.63 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=37.4
Q ss_pred EeecCceeEEEEeccccCchHHHHHHHHHHHHhCCc--------cCCCceEeeCcHHHHHHHHHH
Q 047919 40 YVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFN--------HPMGGLTVPCKEDDFIDLTYR 96 (101)
Q Consensus 40 yVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~--------~~~G~L~IPC~~~~Fe~vl~~ 96 (101)
|-| +.+||. ++++..+.+.+|-.+-..-||++ .++-.++|.=+. +|+..+..
T Consensus 21 f~g--e~~rF~--Vs~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~-E~eEAlkv 80 (101)
T 1wj6_A 21 FKN--EIQSFL--VSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQG-EYEEALKM 80 (101)
T ss_dssp ETT--EEEEEE--ESCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHH-HHHHHHHH
T ss_pred EcC--CeeEEE--ecCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHH-HHHHHHHH
Confidence 445 588885 57899999999999999999953 444567777655 45555443
No 52
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=21.50 E-value=2.7e+02 Score=21.19 Aligned_cols=55 Identities=25% Similarity=0.438 Sum_probs=39.8
Q ss_pred CCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 32 VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 32 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
.+.|...|.||+ +. . .-....--.++.+|.|++.. .+.+| ++.+++...+..+|+
T Consensus 34 ~~P~Lavilvg~-dp------a----S~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN~ 90 (286)
T 4a5o_A 34 RVPGLAVILVGT-DP------A----SQVYVAHKRKDCEEVGFLSQ--AYDLPAETSQDDLLALIDRLND 90 (286)
T ss_dssp CCCEEEEEEESC-CH------H----HHHHHHHHHHHHHHTTCEEE--EEEECTTCCHHHHHHHHHHHHT
T ss_pred CCceEEEEEeCC-CH------H----HHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 456888999997 21 0 11345667889999999875 68887 677888888887764
No 53
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=21.29 E-value=1.6e+02 Score=18.39 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=37.4
Q ss_pred ceeEEEEecccc-CchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHHhhc
Q 047919 45 ERKRFVVPISYL-NHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRLHKQ 100 (101)
Q Consensus 45 ~~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~~~ 100 (101)
+...|.|+.+.. ..+.++.+|+. |++.+.++|.+| -+...++.++..++.|
T Consensus 12 Dg~~f~V~~~vA~~S~~ik~ml~~-----~~e~~~~~Iplp~V~~~iL~kVieyc~~h 64 (99)
T 1hv2_A 12 DDKEYEISRSAAMISPTLKAMIEG-----PFRESKGRIELKQFDSHILEKAVEYLNYN 64 (99)
T ss_dssp TTEEEEEEHHHHTTCHHHHHHHHS-----STTTCTTEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEECHHHHHHhHHHHHHHhc-----ccccCCCceecCCcCHHHHHHHHHHHHHh
Confidence 678999987764 45678888765 554334788887 7888899988877654
No 54
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=21.22 E-value=56 Score=22.46 Aligned_cols=39 Identities=33% Similarity=0.479 Sum_probs=27.0
Q ss_pred ceEEEEeecCceeEEE-Eecccc---CchHHHHHHHHHHHHhCCcc
Q 047919 35 GHIAVYVGEMERKRFV-VPISYL---NHPLFADLLKKAEEEFGFNH 76 (101)
Q Consensus 35 G~~~VyVG~~~~~Rfv-Vp~~~L---~hP~F~~LL~~aeEEfG~~~ 76 (101)
.+-+|..|+ .=|+ ||..-+ +--.|..||+-|||+.+.++
T Consensus 36 ~W~~Vl~~~---~Lyv~iP~~~~~~gsKe~fv~LLEfAEe~L~~~~ 78 (126)
T 1zo0_A 36 TWRAVWNGG---GLYIELPAGPLPEGSKDSFAALLEFAEEQLRADH 78 (126)
T ss_dssp EEEEEEETT---EEEEECSSCCCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred eEEEEEeCC---eEEEEcCCccccccchHHHHHHHHHHHHhcCCCE
Confidence 344555553 5555 665443 55679999999999999875
No 55
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=21.11 E-value=62 Score=20.90 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhCC
Q 047919 61 FADLLKKAEEEFGF 74 (101)
Q Consensus 61 F~~LL~~aeEEfG~ 74 (101)
+-+-|+.||+||+-
T Consensus 56 LdEAlE~AE~eYee 69 (84)
T 2lmc_A 56 LDEALELAEWQYVP 69 (84)
T ss_dssp HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhhh
Confidence 55667788888863
No 56
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=20.37 E-value=31 Score=24.24 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=25.4
Q ss_pred ceeEEEEeccccCch---HHHHHHHHHHHHhC
Q 047919 45 ERKRFVVPISYLNHP---LFADLLKKAEEEFG 73 (101)
Q Consensus 45 ~~~RfvVp~~~L~hP---~F~~LL~~aeEEfG 73 (101)
+++=|-||+.-|+|= .-++|+++|.|.||
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 678899999988874 58999999999998
No 57
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=20.31 E-value=2.9e+02 Score=21.05 Aligned_cols=55 Identities=25% Similarity=0.420 Sum_probs=40.1
Q ss_pred CCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHHhh
Q 047919 32 VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRLHK 99 (101)
Q Consensus 32 vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (101)
...|...|.||+ +. ..-....--.++.||.|+... .+.+| ++.++++..+..+|+
T Consensus 32 ~~P~LavilvG~-dp----------aS~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN~ 88 (288)
T 1b0a_A 32 RAPGLAVVLVGS-NP----------ASQIYVASKRKACEEVGFVSR--SYDLPETTSEAELLELIDTLNA 88 (288)
T ss_dssp CCCEEEEEEESC-CH----------HHHHHHHHHHHHHHHHTCEEC--CEEECTTCCHHHHHHHHHHHHT
T ss_pred CCceEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHhcC
Confidence 346888999997 21 122345567788999999976 68888 677888888887764
No 58
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=20.21 E-value=65 Score=17.85 Aligned_cols=17 Identities=41% Similarity=0.770 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhCCccC
Q 047919 61 FADLLKKAEEEFGFNHP 77 (101)
Q Consensus 61 F~~LL~~aeEEfG~~~~ 77 (101)
..+|.+.-||+||.+..
T Consensus 18 ~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 18 LAELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHCCCcc
Confidence 46889999999999853
No 59
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=20.20 E-value=1.3e+02 Score=19.10 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=36.3
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee--CcHHHHHHHHHHH
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP--CKEDDFIDLTYRL 97 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 97 (101)
+.+.||+ ++|-+.-..| ..|.|++++... +... ..+.|| .+.+.|+.++..+
T Consensus 39 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~-----~~e~-~~i~l~~~v~~~~~~~lL~~~ 94 (138)
T 2z8h_A 39 VTVLVEG---QRFRAHRSVLAACSSYFHSRIVGQ-----TDAE-LTVTLPEEVTVKGFEPLIQFA 94 (138)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC-----CCTT-EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEechHHHHHHcCHHHHHHHhcC-----CCCC-ceEEeCCCCCHHHHHHHHHHh
Confidence 4456664 7788877777 579999988643 2222 468885 6888999988765
No 60
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=20.10 E-value=1e+02 Score=22.32 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=37.9
Q ss_pred EEEEeecCceeEEEEecccc--CchHHHHHHHHHHHHhCCccCCCceEee-CcHHHHHHHHHHHh
Q 047919 37 IAVYVGEMERKRFVVPISYL--NHPLFADLLKKAEEEFGFNHPMGGLTVP-CKEDDFIDLTYRLH 98 (101)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~ 98 (101)
+.+.||+ +.|-+.-..| ..|.|++++...-.|- .. ..|.|+ .+.+.|+.+|..|-
T Consensus 177 v~l~v~~---~~f~~Hk~vLaa~S~~F~~~f~~~~~e~---~~-~~i~l~~~~~~~f~~~L~~iY 234 (312)
T 3hqi_A 177 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHEMEES---KK-NRVEINDVEPEVFKEMMCFIY 234 (312)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHTTC--------CC-SEEEECSSCHHHHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHcCHHHHHHhccCcccc---CC-ceEEecCCCHHHHHHHHHhhc
Confidence 5566664 6688887777 4799999986432222 12 678998 79999999998764
Done!