Query 047920
Match_columns 556
No_of_seqs 145 out of 1086
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:36:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3670 Lignostilbene-alpha,be 100.0 5E-111 1E-115 871.6 34.5 458 69-556 19-489 (490)
2 PF03055 RPE65: Retinal pigmen 100.0 4E-109 9E-114 905.8 35.1 465 74-555 2-486 (486)
3 PLN02258 9-cis-epoxycarotenoid 100.0 8E-107 2E-111 892.8 46.7 453 72-555 115-583 (590)
4 PLN02491 carotenoid 9,10(9',10 100.0 8E-105 2E-109 874.8 45.2 454 70-555 50-536 (545)
5 PLN02969 9-cis-epoxycarotenoid 100.0 5E-102 1E-106 863.6 46.2 468 69-555 57-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 3.8E-67 8.2E-72 570.0 30.0 460 87-555 36-575 (582)
7 KOG1285 Beta, beta-carotene 15 99.8 2.2E-18 4.8E-23 188.8 15.1 279 72-368 108-406 (582)
8 PF06433 Me-amine-dh_H: Methyl 66.6 1.8E+02 0.004 30.9 18.9 243 213-543 18-290 (342)
9 COG3823 Glutamine cyclotransfe 56.7 6.9 0.00015 38.7 1.9 37 195-233 95-132 (262)
10 PF02239 Cytochrom_D1: Cytochr 46.3 77 0.0017 33.9 8.1 75 451-541 45-119 (369)
11 PF02239 Cytochrom_D1: Cytochr 36.3 67 0.0014 34.4 5.7 86 441-542 272-359 (369)
12 TIGR02276 beta_rpt_yvtn 40-res 27.8 1.5E+02 0.0033 20.2 4.6 27 521-548 13-39 (42)
13 PF13570 PQQ_3: PQQ-like domai 25.3 62 0.0013 22.5 2.2 28 192-221 13-40 (40)
14 CHL00108 psbJ photosystem II p 22.1 28 0.00062 24.9 -0.1 12 91-102 5-16 (40)
15 TIGR03866 PQQ_ABC_repeats PQQ- 20.2 6.2E+02 0.014 24.5 9.2 67 470-547 229-295 (300)
No 1
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.3e-111 Score=871.64 Aligned_cols=458 Identities=29% Similarity=0.456 Sum_probs=388.2
Q ss_pred ccccccCCccccccccccccE-EEeecCCCCceEEEEeCCCCCCCCCCccccCccCCCcEEEEEEeCC-eEEEEEEEecC
Q 047920 69 VERNHVAWTSVRQERWEGELV-VQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENG-RLIAGHRQIES 146 (556)
Q Consensus 69 ~~~~~~~~~~~~~E~~~~~l~-V~G~IP~~L~Gtl~RnGPg~~~~g~~~~~H~FDGdGml~~~~f~~G-~v~y~~RfV~T 146 (556)
...|.++|+|+++|.+...|+ |+|+||++|+|||||||||++++++...+||||||||||+|.|.|| +|+|+||||||
T Consensus 19 ~~~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT 98 (490)
T COG3670 19 NPYWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRT 98 (490)
T ss_pred chhhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEee
Confidence 467999999999999998998 9999999999999999999999999999999999999999999995 99999999999
Q ss_pred hHHHHHHHcCCccccccCCCCCCCchhhhhhhhhhcccCCCCCCccceeeEEcCCceeeEeecCCCcceeeCCCCCceee
Q 047920 147 EAYKAAKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTIS 226 (556)
Q Consensus 147 ~~~~~e~~agr~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNT~V~~~g~grLlAl~E~g~~p~~iDp~TLeT~g 226 (556)
++|.+|++||+++|+++++.+.+..+...+ ....||.|||||+.|+ ++|+||||+| .||+|||.||+|+|
T Consensus 99 ~g~~ae~~Ag~~l~~g~~~~~p~~~~~~~~--------~~~lkn~aNTsVi~~~-~~LlalwEgG-~pyrLdp~tL~TlG 168 (490)
T COG3670 99 QGYLAENEAGKPLWGGLGETQPPGVRPHSR--------TGDLKNAANTSVIMHG-DELLALWEGG-SPYRLDPDTLETLG 168 (490)
T ss_pred ceeehhhhcCcceeccccccCCCCcCcCcc--------ccccccCCccceEeeh-hHHHHHHhcC-CccccChhHhhhcC
Confidence 999999999999999988754332211110 1357999999999998 8999999998 69999999999999
Q ss_pred ccccCCCCCCcccCCCCccccC--CceecccCCCCCcEEEEEEeCCCceeEEEEEEecCCCCCCccccccccCCCEEEEE
Q 047920 227 RFEYSDTLGGLIHSAHPIVTES--EFLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVP 304 (556)
Q Consensus 227 ~~d~~~~l~~~~~sAHP~~Dp~--e~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~v~~~~~~~~~~iHdfavTenY~V~~ 304 (556)
+.+|++.-.+..||||||+||. |++||++.+..+..+++.+++.+..++. ..+ .+|.++|||||++|+||+||+
T Consensus 169 ~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~-~~i---~lpg~~~~HDFa~T~~y~If~ 244 (490)
T COG3670 169 KEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRT-VDI---PLPGPPMMHDFAITENYLIFF 244 (490)
T ss_pred hhhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEe-eee---ecCCCccceeeeecCceEEEE
Confidence 9999985445789999999999 7999999887775577777755432221 123 358999999999999999999
Q ss_pred ecccccCHHHHHhcCCCCccceeeCCCCCcEEEEEeCCCCceeEEEEcCceeEEeeccccccCCCCCceeEEEEEeeccC
Q 047920 305 EMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEEKDEDGRLIAIIADCCEHN 384 (556)
Q Consensus 305 ~~Pl~~~~~~~l~g~~~~~~~~~w~~~~~t~i~Vi~R~~g~~v~~~e~~~~f~fH~vNAyEd~d~~g~~~~Iv~D~~~~~ 384 (556)
+.|+.+|+...+.+.....+++.|+|+.+|||+||||.+++.|||||+++||+||+.||||+.| | .|.+|+|+|+
T Consensus 245 ~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g~~~irwfE~~p~fvfH~~NAye~~d--~---~v~~d~~~~~ 319 (490)
T COG3670 245 DLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREGDSEIRWFEAEPGFVFHFLNAYEEGD--E---VVLVDFLRYD 319 (490)
T ss_pred eCcccccchhHHhcCcccccceeecCCCCcEEEEEccCCCCceeEEecCCeEEEEecceeecCC--C---cEEEEEEeec
Confidence 9999999655555666667899999999999999999843689999999999999999999987 3 6999999998
Q ss_pred CchhhhhhhhhcccccCCCCC--CCCCccEEEEEEeCCCCCccceeeecCCCccCCCCCCCccCCCCCCCCccEEEEecc
Q 047920 385 ADTTILDKLRLNNLRSFNGQD--VLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGMDMCSINPAYLGKMYRYAYACGA 462 (556)
Q Consensus 385 ~~~~~~~~~~l~~l~~~~~~~--~~~~~~L~R~~idl~~~~~~~~~~~l~~~~~~~~~EfP~In~~~~G~~yry~Y~~~~ 462 (556)
+.... ++.++...+.+ ....++|+||+|+|+++.+. ++.++ ++++|||+||+++.|++|||+|+++.
T Consensus 320 -~~~~~----~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~--~~~~~----~r~~EFP~in~~~~G~p~RY~Y~~~~ 388 (490)
T COG3670 320 -DFSQT----LDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVA--EEQLD----DRACEFPRINPRYVGQPYRYTYMSGA 388 (490)
T ss_pred -ccccc----cccccccccccccccCCCcceEEEEccccchhH--HHhhh----hhhcccCccChhhcCCceEEEEEecc
Confidence 43221 12222222222 22368999999999987643 23444 57899999999999999999999976
Q ss_pred cCCCCCCCc---eEEEecCCCceEEEc-CCCCcCCccEEeeCCCCCCCCCeEEEEEEEcC-CCceEEEEEecCCccc--c
Q 047920 463 KRPCNFPNT---LTKLDLVGKKAKNWY-EEGAVPSEPFFVARPGATEEDDGVVISIVSER-NGEGFALLLDGSTFEE--I 535 (556)
Q Consensus 463 ~~~~~~~~~---lvK~Dl~tg~~~~w~-~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~-~~~s~L~VLDA~~l~e--V 535 (556)
++....+++ |+|+|++||+.+.|+ ++++|++||+||||||+.+|||||||++|+|. .++|+|+||||++++. |
T Consensus 389 rp~~~l~~g~~~l~k~D~~tg~~~~~~~g~~~y~~E~vfvPrpg~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epI 468 (490)
T COG3670 389 RPGTFLFQGLQTLAKHDLETGTSQVYSFGPRGYGSEPVFVPRPGSSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPI 468 (490)
T ss_pred cCCccchhhcceeEEEeccCCcEEEEecCCCCcccccccccCCCCCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcc
Confidence 655445555 999999999999995 89999999999999999999999999999996 4899999999999875 9
Q ss_pred EEEEcCCCCCCCCCcccccCC
Q 047920 536 ARAKFPYGLPYGLHGCWVPKN 556 (556)
Q Consensus 536 Ar~~LP~~vP~GfHG~w~~~~ 556 (556)
||++||++||+||||.|++.+
T Consensus 469 a~l~Lp~~vP~gfHG~w~~~~ 489 (490)
T COG3670 469 ARLALPQRVPYGFHGNWVPTE 489 (490)
T ss_pred eEEeccccccccccccccccc
Confidence 999999999999999999863
No 2
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=4e-109 Score=905.81 Aligned_cols=465 Identities=36% Similarity=0.640 Sum_probs=348.0
Q ss_pred cCCccccccc-cccccEEEeecCCCCceEEEEeCCCCCC-CCCCccccCccCCCcEEEEEEeCCeEEEEEEEecChHHHH
Q 047920 74 VAWTSVRQER-WEGELVVQGEIPLWLKGTYLRNGPGMWH-IGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKA 151 (556)
Q Consensus 74 ~~~~~~~~E~-~~~~l~V~G~IP~~L~Gtl~RnGPg~~~-~g~~~~~H~FDGdGml~~~~f~~G~v~y~~RfV~T~~~~~ 151 (556)
++|+|+++|. +...++|+|+||+||+|||||||||+++ +++..+.||||||||||+|+|++|+|+|+||||+|+.|++
T Consensus 2 g~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~~ 81 (486)
T PF03055_consen 2 GGFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYKA 81 (486)
T ss_dssp GCGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHHH
T ss_pred CCCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHHH
Confidence 6899999999 7677999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHcCCccccc-cCCCCCCCchhhhhhhhhhcccCCCCCCccceeeEEcCCceeeEeecCCCcceeeCCCCCceeecccc
Q 047920 152 AKENKKLCYRE-FSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTISRFEY 230 (556)
Q Consensus 152 e~~agr~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNT~V~~~g~grLlAl~E~g~~p~~iDp~TLeT~g~~d~ 230 (556)
|+++||.+|++ |++.+.++++.+.+ ...........+|+|||||++|+ ||||||||++ .||+|||+||||+|.++|
T Consensus 82 e~~~g~~~~~g~~gt~~~~~~~~~~~-~~~~~~~~~~~~~~aNt~v~~~~-g~llAl~E~g-~p~~lDp~TLeT~g~~~~ 158 (486)
T PF03055_consen 82 EREAGRRLYRGEFGTVPLPDPCRNIF-RFPMPFFRGKPKNNANTNVIPHG-GRLLALWEGG-PPYELDPDTLETLGPFDF 158 (486)
T ss_dssp HHHHTSS-SC-TTTCTTCSTHHHHTC-HHTTS--GGGB-----SEEEEET-TEEEEE-TTS-EEEEEETTTCEEEEEEEG
T ss_pred HHhcCCceecccccccccCchhhhhh-hhccccccccCCCCceeeeEEEC-CEEEEEEcCC-CCEEechhHhhhcCcccc
Confidence 99999999977 78765445443321 00111223468999999999997 8999999999 699999999999999999
Q ss_pred CCCCCCcccCCCCccccC--CceecccCCCC---CcEEEEEEeCCCceeEEEEEEecCCCCCCccccccccCCCEEEEEe
Q 047920 231 SDTLGGLIHSAHPIVTES--EFLTLLPDLVS---PGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVPE 305 (556)
Q Consensus 231 ~~~l~~~~~sAHP~~Dp~--e~~~~~~~~~~---~~y~v~~~~~~~~~~~~~~~v~~~~~~~~~~iHdfavTenY~V~~~ 305 (556)
++.|++..+|||||+||+ ++|+|++.+.. +.|.++.+++... .+.+++...++.++|||||+|||||+||++
T Consensus 159 ~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~iHdf~vT~~Y~V~~~ 235 (486)
T PF03055_consen 159 DGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGK---KIHRVPSFPLPRPSYIHDFAVTENYVVFPD 235 (486)
T ss_dssp GGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSE---EEEEEEESCCCS-B-----EE-SSEEEEEE
T ss_pred cccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccc---eeEEeeeccCCCCcccccccccCceEEEEE
Confidence 999998899999999987 89999997643 6689999987763 344555556789999999999999999999
Q ss_pred cccccCHHHHHhcCCCCccceeeCCCCCcEEEEEeCCCC-ceeEEEEcCceeEEeeccccccCCCCCceeEEEEEeeccC
Q 047920 306 MSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASG-KIVASVEVPLYITFHFINAYEEKDEDGRLIAIIADCCEHN 384 (556)
Q Consensus 306 ~Pl~~~~~~~l~g~~~~~~~~~w~~~~~t~i~Vi~R~~g-~~v~~~e~~~~f~fH~vNAyEd~d~~g~~~~Iv~D~~~~~ 384 (556)
+|+.+++.+++.|... .++|+|+|+++++|+||||+++ +.++||++++||+||++||||++++++ +||+|+|+|+
T Consensus 236 ~P~~~~~~~~~~g~~~-~~~~~~~p~~~t~~~VipR~~~~~~v~~~~~~~~~~~H~~NAyE~~dg~~---~iv~d~~~~~ 311 (486)
T PF03055_consen 236 NPLRFDPERLLLGGSP-IDCLKWDPERPTRFHVIPRDGGKSPVRWFEAPPFFVFHFVNAYEDDDGGG---EIVLDACRYD 311 (486)
T ss_dssp -SEEE-HHHHHTTCCT-GGCEEE-TTS-EEEEEEETTTSCCCEEEEEETTCEEEEEEEEEEETTT-T---EEEEEEEEEC
T ss_pred CCeEECHHHHhhCCcc-cceEEECCCCCeEEEEEECcCCCceeEEEecCChhhccccceeecCCCce---EEEEEEeecC
Confidence 9999999999977643 6789999999999999999998 779999999999999999999876323 7999999998
Q ss_pred CchhhhhhhhhcccccC-CCCCCCCCccEEEEEEeCC--CCCccceeeecCCCccCC-CCCCCccCCCCCCCCccEEEEe
Q 047920 385 ADTTILDKLRLNNLRSF-NGQDVLPDARVGRFRIPFD--GSEFGELEAALDPDEHGR-GMDMCSINPAYLGKMYRYAYAC 460 (556)
Q Consensus 385 ~~~~~~~~~~l~~l~~~-~~~~~~~~~~L~R~~idl~--~~~~~~~~~~l~~~~~~~-~~EfP~In~~~~G~~yry~Y~~ 460 (556)
+..+++.+++++++.. ......+.++|+||+||++ ++.+ .++.|+ +. ++|||+||+++.|++|||+|++
T Consensus 312 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~--~~~~l~----~~~~~EfP~in~~~~g~~~ry~Y~~ 384 (486)
T PF03055_consen 312 -DPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRV--SEEPLD----DGNPCEFPRINPRYSGRPYRYVYAV 384 (486)
T ss_dssp -SSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEE--EEEEEE----TTEEEEEEEE-GGGTTS--SEEEEE
T ss_pred -CcccccccchhcccccccccccCCCceEEEEEEcccccccee--EHhHhc----cCCCcccceeCcccCCCcccEEEEE
Confidence 6667776666666531 0123456789999999998 4433 234454 23 6999999999999999999976
Q ss_pred cccC--C-CCCCCceEEEecCCCceEEEc-CCCCcCCccEEeeCCCCCCCCCeEEEEEEEcC-CCceEEEEEecCCccc-
Q 047920 461 GAKR--P-CNFPNTLTKLDLVGKKAKNWY-EEGAVPSEPFFVARPGATEEDDGVVISIVSER-NGEGFALLLDGSTFEE- 534 (556)
Q Consensus 461 ~~~~--~-~~~~~~lvK~Dl~tg~~~~w~-~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~-~~~s~L~VLDA~~l~e- 534 (556)
+... . ..++++|+|+|+++|+.+.|. +++++++||+|||||++.+|||||||++|+|. .++|+|+||||++|++
T Consensus 385 ~~~~~~~~~~~~~~l~k~D~~tg~~~~~~~~~~~~~~EpvFVPr~~~~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~~G 464 (486)
T PF03055_consen 385 GMDPERSPGFPFNGLVKVDLETGEVQRWSFGPGCFPGEPVFVPRPGGAEEDDGYLLSVVYDSDTNRSELLVLDAKDLEEG 464 (486)
T ss_dssp EECSCTS---EEEEEEEEETTTTEEEEEE-TTTEEE--EEEEE-TTS-STT-EEEEEEEEETTTTCEEEEEEETTTTCE-
T ss_pred eecccCCcCcCCCEEEEEecccccceEEECCCCceecceEeccCCCCCCCCceEEEEEEEECCCCccEEEEEeCCCCCcC
Confidence 5432 2 457899999999999999996 67999999999999999999999999999996 5899999999999999
Q ss_pred -cEEEEcCCCCCCCCCcccccC
Q 047920 535 -IARAKFPYGLPYGLHGCWVPK 555 (556)
Q Consensus 535 -VAr~~LP~~vP~GfHG~w~~~ 555 (556)
|||++||++||+||||+|++.
T Consensus 465 PvAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 465 PVARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp -EEEEEESS---S-SEEEEEE-
T ss_pred ceEEEECCCCCCCCccccccCC
Confidence 999999999999999999974
No 3
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=7.9e-107 Score=892.81 Aligned_cols=453 Identities=24% Similarity=0.395 Sum_probs=373.7
Q ss_pred cccCCccccccccccccEEEeecCCCCceEEEEeCCCCCCCCCCccccCccCCCcEEEEEEeCCeEEEEEEEecChHHHH
Q 047920 72 NHVAWTSVRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKA 151 (556)
Q Consensus 72 ~~~~~~~~~~E~~~~~l~V~G~IP~~L~Gtl~RnGPg~~~~g~~~~~H~FDGdGml~~~~f~~G~v~y~~RfV~T~~~~~ 151 (556)
+.++|+|+++|.....|+|+|+||+||+|||||||||+.+.+ ...+||||||||||+|+|+||+|+|+||||||++|++
T Consensus 115 l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p-~~~~H~FDGDGMvhav~f~dG~a~y~~RfVrT~~~~~ 193 (590)
T PLN02258 115 IAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEP-VAGHHLFDGDGMVHAVRIGNGSASYACRFTETNRLVQ 193 (590)
T ss_pred ccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCC-CCCCccccCCceEEEEEECCCeEEEEeeeecchhHHH
Confidence 578999999999999999999999999999999999965432 3568999999999999999999999999999999999
Q ss_pred HHHcCCccccc-cCCCCCCCchhh----hhhhhhhcccCCCCCCccceeeEEcCCceeeEeecCCCcceeeCCC---CCc
Q 047920 152 AKENKKLCYRE-FSEVPKPDNFLS----YVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPD---TLD 223 (556)
Q Consensus 152 e~~agr~~~~~-f~~~~~~~~~~~----~~~~~~~~~~~~~~~~~aNT~V~~~g~grLlAl~E~g~~p~~iDp~---TLe 223 (556)
|+++||++|.+ +++......+.. ..+.+.+.+.....+|+|||||++|+ ||||||||++ .||+||++ |||
T Consensus 194 E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~-grLlAL~E~g-~Py~l~~d~~~TLe 271 (590)
T PLN02258 194 ERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFN-GRLLAMSEDD-LPYQVRITGDGDLE 271 (590)
T ss_pred HHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEEC-CEEEEEEcCC-CceEecCCCCCCcc
Confidence 99999999985 776531111110 11111112222235789999999997 8999999998 59999654 999
Q ss_pred eeeccccCCCCCCcccCCCCccccC--CceecccCCC-CCcEEEEEEeCCCceeEEEEEEecCCCCCCccccccccCCCE
Q 047920 224 TISRFEYSDTLGGLIHSAHPIVTES--EFLTLLPDLV-SPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHY 300 (556)
Q Consensus 224 T~g~~d~~~~l~~~~~sAHP~~Dp~--e~~~~~~~~~-~~~y~v~~~~~~~~~~~~~~~v~~~~~~~~~~iHdfavTenY 300 (556)
|+|.+||++.|. ..||||||+||. |+++|+|+.. +|.+.++.+++.+.... ...++ ++.|+|||||+|||||
T Consensus 272 T~G~~df~g~l~-~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~-~~~i~---lp~p~~~HDFaiTenY 346 (590)
T PLN02258 272 TVGRYDFDGQLD-SSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSP-DVEIP---LDQPTMMHDFAITENF 346 (590)
T ss_pred cCcccccCCccC-cccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEe-eEEee---CCCCccccceeccCce
Confidence 999999999995 689999999997 9999999854 46677788876543222 22443 5789999999999999
Q ss_pred EEEEecccccCHHHHHhcCCCCccceeeCCCCCcEEEEEeCCCC--ceeEEEEcCceeEEeeccccccCCCCCceeEEEE
Q 047920 301 VVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASG--KIVASVEVPLYITFHFINAYEEKDEDGRLIAIIA 378 (556)
Q Consensus 301 ~V~~~~Pl~~~~~~~l~g~~~~~~~~~w~~~~~t~i~Vi~R~~g--~~v~~~e~~~~f~fH~vNAyEd~d~~g~~~~Iv~ 378 (556)
+||+++|+.+++.+++.|+. ++.|++++++||+||||+++ ..++||++|+||+||++||||+++ +| +||+
T Consensus 347 ~Vf~d~Pl~~~~~~~~~g~~----~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~-~~---~VVv 418 (590)
T PLN02258 347 VVIPDQQVVFKLSEMIRGGS----PVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPE-TD---EVVV 418 (590)
T ss_pred EEEEccCceEcHHHHhhCCC----ceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCC-CC---eEEE
Confidence 99999999999999988753 58899999999999999864 468999999999999999999754 23 6999
Q ss_pred EeeccCCchhhhhhhhhcccccCCCCCCCCCccEEEEEEeCCCCCccceeeecCCCccCCCCCCCccCCCCCCCCccEEE
Q 047920 379 DCCEHNADTTILDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGMDMCSINPAYLGKMYRYAY 458 (556)
Q Consensus 379 D~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~L~R~~idl~~~~~~~~~~~l~~~~~~~~~EfP~In~~~~G~~yry~Y 458 (556)
|.|++. ++..+ +..+ .....++|+||||||+++.+. .+.++++. ..++|||+||++|.||+|||+|
T Consensus 419 d~~~~~-~~~~~----~~~~------~~~~~~~L~r~ridl~tg~~~-~~~l~~~~--~~~~EFP~In~~~~Grk~Ry~Y 484 (590)
T PLN02258 419 IGSCMT-PPDSI----FNES------DESLRSVLSEIRLNLRTGEST-RRPIISGE--QVNLEAGMVNRNLLGRKTRYAY 484 (590)
T ss_pred EEeccc-Chhhh----cccc------cccccceEEEEEEECCCCcee-eeEeecCC--CcccccceECHHHCCCccceEE
Confidence 999987 33211 1111 112357899999999877653 23333311 3689999999999999999999
Q ss_pred EecccCCCCCCCceEEEecCCCceEEE-cCCCCcCCccEEeeCCCCCC-CCCeEEEEEEEcC-CCceEEEEEecCCcccc
Q 047920 459 ACGAKRPCNFPNTLTKLDLVGKKAKNW-YEEGAVPSEPFFVARPGATE-EDDGVVISIVSER-NGEGFALLLDGSTFEEI 535 (556)
Q Consensus 459 ~~~~~~~~~~~~~lvK~Dl~tg~~~~w-~~~~~~~~EPvFVPrpg~~~-EDDG~Lls~V~d~-~~~s~L~VLDA~~l~eV 535 (556)
++... +...+++|+|+|+++|+.+.| +++++|++||+||||+++.+ |||||||++|+|. .++|+|+||||++|++|
T Consensus 485 ~~~~~-~~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~~V 563 (590)
T PLN02258 485 LAIAE-PWPKVSGFAKVDLSTGEVKKYIYGEGRYGGEPFFVPRGSGSEAEDDGYILAFVHDEEKGKSELQVVNAVNLELE 563 (590)
T ss_pred EeccC-CCCCCCeEEEEECCCCcEEEEECCCCccccCCEeccCCCCCcccCCcEEEEEEEECCCCceEEEEEeCCCCccc
Confidence 98654 355689999999999999877 69999999999999999875 9999999999996 58999999999999999
Q ss_pred EEEEcCCCCCCCCCcccccC
Q 047920 536 ARAKFPYGLPYGLHGCWVPK 555 (556)
Q Consensus 536 Ar~~LP~~vP~GfHG~w~~~ 555 (556)
||++||++||+||||+|++.
T Consensus 564 Arv~LP~rVP~GFHG~wv~~ 583 (590)
T PLN02258 564 ATVKLPSRVPYGFHGTFISA 583 (590)
T ss_pred EEEECCCCCCCcccccccCH
Confidence 99999999999999999985
No 4
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=7.7e-105 Score=874.84 Aligned_cols=454 Identities=21% Similarity=0.331 Sum_probs=363.3
Q ss_pred cccccCCcccccccc-ccccEEEeecCCCCceEEEEeCCCCCCCCCCccccCccCCCcEEEEEEeCCeEEEEEEEecChH
Q 047920 70 ERNHVAWTSVRQERW-EGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEA 148 (556)
Q Consensus 70 ~~~~~~~~~~~~E~~-~~~l~V~G~IP~~L~Gtl~RnGPg~~~~g~~~~~H~FDGdGml~~~~f~~G~v~y~~RfV~T~~ 148 (556)
.-+.++|+|+++|.. ...|+|+|+||+||+|||||||||+++. ....+||||||||||+|+|++|+|+|+||||||++
T Consensus 50 ~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~-~~~~~H~FDGDGMlha~~f~~G~a~y~~RfVrT~~ 128 (545)
T PLN02491 50 HYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKFS-PVAGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSR 128 (545)
T ss_pred ccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCCCCCC-CCCCCccccCCccEEEEEEcCCcEEEEeeeecccc
Confidence 347889999999985 7779999999999999999999998753 45678999999999999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCCCC-Cchhhhhhhhhhc---ccCCCCCCccceeeEEcCCceeeEeecCCCcceee---CCCC
Q 047920 149 YKAAKENKKLCYREFSEVPKP-DNFLSYVGELASL---FSGASLTDNANTGVVKLGDGRVVCLTETQKGSIII---DPDT 221 (556)
Q Consensus 149 ~~~e~~agr~~~~~f~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~aNT~V~~~g~grLlAl~E~g~~p~~i---Dp~T 221 (556)
|++|+++|+.+|..++..... +.+...+...... ......+|+|||||++|+ ||||||||++ .||+| ||.|
T Consensus 129 ~~~E~~ag~~~~~~~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~-grLlAl~E~g-~Py~l~~~Dp~t 206 (545)
T PLN02491 129 LKQEEFFGGAKFMKIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHH-GKLLALSEAD-KPYVVKVLEDGD 206 (545)
T ss_pred hhhhhhcCcccccccccccccchhhhhhhhhhhccccccccccCCCCCceeEEEEC-CEEEEEEcCC-CCeEecCCCCCC
Confidence 999999999999864432100 0001111100000 011112689999999997 8999999998 59995 7799
Q ss_pred CceeeccccCCCCCCcccCCCCccccC--CceecccCCCCCcEEEEEEeCCCceeEEEEEEecCCCCCCccccccccCCC
Q 047920 222 LDTISRFEYSDTLGGLIHSAHPIVTES--EFLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEH 299 (556)
Q Consensus 222 LeT~g~~d~~~~l~~~~~sAHP~~Dp~--e~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~v~~~~~~~~~~iHdfavTen 299 (556)
|||+|.+||++.|. ..||||||+||. |+++|++...++...++.+++.+... ..+++ .++.|+|||||+||||
T Consensus 207 LeT~G~~df~g~l~-~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~---~~v~i-~l~~~~~~HDFaiTen 281 (545)
T PLN02491 207 LQTLGLLDYDKRLK-HSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMH---DPVPI-TISEPIMMHDFAITEN 281 (545)
T ss_pred cceeeecccCCccC-cccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCc---ceeEe-ecCCCceeeeeEecCC
Confidence 99999999999997 689999999997 99999998854544445555433221 12232 3578999999999999
Q ss_pred EEEEEecccccCHHHHHhcCCCCccceeeCCCCCcEEEEEeCCCC--ceeEEEEcCceeEEeeccccccCCCCCceeEEE
Q 047920 300 YVVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASG--KIVASVEVPLYITFHFINAYEEKDEDGRLIAII 377 (556)
Q Consensus 300 Y~V~~~~Pl~~~~~~~l~g~~~~~~~~~w~~~~~t~i~Vi~R~~g--~~v~~~e~~~~f~fH~vNAyEd~d~~g~~~~Iv 377 (556)
|+||+++|+.+++.++++++.. ++.|++++++||+||||.++ +.++||++|+||+||++|||||++ +||
T Consensus 282 y~Vf~~~Pl~~~~~~~~~~~~~---~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~~------~Iv 352 (545)
T PLN02491 282 YAIFMDLPLYFRPKEMVKEKKF---IYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEED------EVV 352 (545)
T ss_pred EEEEEECCcccCHHHHhhCCCc---eeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccCC------eEE
Confidence 9999999999999999887542 58999999999999999754 468999999999999999999764 699
Q ss_pred EEeeccCCchhh--hhhhhhcccccCCCCCCCCCccEEEEEEeCCCCCccceeeecCCCccCCCCCCCccCCCCCCCCcc
Q 047920 378 ADCCEHNADTTI--LDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGMDMCSINPAYLGKMYR 455 (556)
Q Consensus 378 ~D~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~~~~L~R~~idl~~~~~~~~~~~l~~~~~~~~~EfP~In~~~~G~~yr 455 (556)
+|+|+|+ ++.+ ......+.+ ....++|+||||||+++.+. +..|+ +.++|||+||++|.||+||
T Consensus 353 vd~~~~~-~~~~~~~~~~~~~~~-------~~~~~~l~r~ridl~tg~~~--~~~l~----~~~~EfP~In~~~~Grk~r 418 (545)
T PLN02491 353 LITCRLE-NPDLDMVNGKVKEKL-------ENFGNELYEMRFNMKTGAAS--QKKLS----ASAVDFPRVNESYTGRKQR 418 (545)
T ss_pred EEEeccC-CCccccccccccccc-------cccCceEEEEEEECCCCcee--eeccC----CcccccCccCHHHCCCccc
Confidence 9999997 4321 001001111 11357899999999876542 23343 5689999999999999999
Q ss_pred EEEEecccCCCCCCCceEEEecCC----CceE---------E-EcCCCCcCCccEEeeCCCC--CCCCCeEEEEEEEcC-
Q 047920 456 YAYACGAKRPCNFPNTLTKLDLVG----KKAK---------N-WYEEGAVPSEPFFVARPGA--TEEDDGVVISIVSER- 518 (556)
Q Consensus 456 y~Y~~~~~~~~~~~~~lvK~Dl~t----g~~~---------~-w~~~~~~~~EPvFVPrpg~--~~EDDG~Lls~V~d~- 518 (556)
|+|++... +...+++|+|+|+++ |+.+ . |+++++++|||+||||+++ .+|||||||++|+|.
T Consensus 419 y~Y~~~~~-~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~ 497 (545)
T PLN02491 419 YVYGTILD-SIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDEN 497 (545)
T ss_pred EEEEeccC-CccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCC
Confidence 99998664 334579999999996 4432 3 4799999999999999754 589999999999996
Q ss_pred CCceEEEEEecCCcc--ccEEEEcCCCCCCCCCcccccC
Q 047920 519 NGEGFALLLDGSTFE--EIARAKFPYGLPYGLHGCWVPK 555 (556)
Q Consensus 519 ~~~s~L~VLDA~~l~--eVAr~~LP~~vP~GfHG~w~~~ 555 (556)
.++|+|+||||++|+ +|||++||++||+||||+|++.
T Consensus 498 ~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~ 536 (545)
T PLN02491 498 TGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTE 536 (545)
T ss_pred CCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCH
Confidence 589999999999998 5999999999999999999985
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=4.7e-102 Score=863.58 Aligned_cols=468 Identities=24% Similarity=0.330 Sum_probs=369.3
Q ss_pred ccccccCCccccccc-ccccc-EEEeecCCCC-ceEEEEeCCCCCCCCCCccccCccCCCcEEEEEEeCC--eEEEEEEE
Q 047920 69 VERNHVAWTSVRQER-WEGEL-VVQGEIPLWL-KGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENG--RLIAGHRQ 143 (556)
Q Consensus 69 ~~~~~~~~~~~~~E~-~~~~l-~V~G~IP~~L-~Gtl~RnGPg~~~~g~~~~~H~FDGdGml~~~~f~~G--~v~y~~Rf 143 (556)
-|.|+.+|+|+++|. +..+| +|+|+||+|| +|||||||||++++++.++.||||||||||+|+|++| +|+|+|||
T Consensus 57 ~~~~~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRf 136 (610)
T PLN02969 57 FWDYQFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARY 136 (610)
T ss_pred HHHhhhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeee
Confidence 367899999999999 67788 4999999999 9999999999999877678999999999999999998 59999999
Q ss_pred ecChHHHHHHHcCCcccc----c-cCCCCCCCchhhhhhhhhhcccCCCCCCccceeeEEcCCceeeEeecCCCcceeeC
Q 047920 144 IESEAYKAAKENKKLCYR----E-FSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIID 218 (556)
Q Consensus 144 V~T~~~~~e~~agr~~~~----~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNT~V~~~g~grLlAl~E~g~~p~~iD 218 (556)
|||++|++|+++|+.+++ + |+... +... .......+|+|||||++|+ ||||||||++ .||+||
T Consensus 137 VrT~~~~~E~~ag~~~~~~~~~~pfs~~~-~~~~---------~~~~~~~kn~ANT~V~~~g-g~LlAl~E~g-~P~~lD 204 (610)
T PLN02969 137 VKTEAKKEEHDPETRTWRFTYRGPFSVLK-GGKR---------VGNVKVMKNVANTSVLKWG-GRLLCLWEGG-EPYEID 204 (610)
T ss_pred eccHHHHHHHHhCCcceeeeeccchhccc-CCCC---------cccccccccCCCcceeeeC-CEEEEecCCC-CCeEcC
Confidence 999999999999977653 2 32211 1100 0001246899999999997 8999999998 599999
Q ss_pred CCCCceeeccccC-----------------------------CCCC--CcccCCCCccccC--CceecccCC-----CCC
Q 047920 219 PDTLDTISRFEYS-----------------------------DTLG--GLIHSAHPIVTES--EFLTLLPDL-----VSP 260 (556)
Q Consensus 219 p~TLeT~g~~d~~-----------------------------~~l~--~~~~sAHP~~Dp~--e~~~~~~~~-----~~~ 260 (556)
|+||||+|.++|. +.++ ...||||||+||. ++++|++.. .++
T Consensus 205 P~TLeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~ 284 (610)
T PLN02969 205 SGTLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRS 284 (610)
T ss_pred cCccceeecccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCc
Confidence 9999999999983 2232 3578999999998 899999764 346
Q ss_pred cEEEEEEeCCCceeEEEEEEecCCCCCCccccccccCCCEEEEEecccccCHHHHHh---cCCCCccceeeCCCCCc-EE
Q 047920 261 GYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVPEMSLRYCAQNLLR---AEPTPLYKFEWHPDSKA-FL 336 (556)
Q Consensus 261 ~y~v~~~~~~~~~~~~~~~v~~~~~~~~~~iHdfavTenY~V~~~~Pl~~~~~~~l~---g~~~~~~~~~w~~~~~t-~i 336 (556)
.+.++.+++.+..... ..+ .++.++|||||+|||||+||+++|+++|+.+++. |...++++|+|+|++++ +|
T Consensus 285 ~~~~y~~d~~G~~~~~-~~~---~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~ 360 (610)
T PLN02969 285 NFTFYEFDADFKLVQR-KEF---KLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPV 360 (610)
T ss_pred eeEEEEECCCCCEecc-eee---cCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEE
Confidence 6889999865432211 233 4578999999999999999999999999986553 44456789999999995 89
Q ss_pred EEEeCCCC---ceeEE---EEcC-ceeEEeeccccccCCCCCceeEEEEEeec--cCCchhhhhhhh--hcccccCCC--
Q 047920 337 HVMCKASG---KIVAS---VEVP-LYITFHFINAYEEKDEDGRLIAIIADCCE--HNADTTILDKLR--LNNLRSFNG-- 403 (556)
Q Consensus 337 ~Vi~R~~g---~~v~~---~e~~-~~f~fH~vNAyEd~d~~g~~~~Iv~D~~~--~~~~~~~~~~~~--l~~l~~~~~-- 403 (556)
+||||+++ +.++| +++| +||+||++||||+++++|. .+||+|+|. |+ +..+...+. +..++....
T Consensus 361 ~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~-~~Ivvd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 438 (610)
T PLN02969 361 YLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGN-LRIQLHASACSYQ-WFSFHRMFGYDWQNKKLDPSVM 438 (610)
T ss_pred EEEECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCc-eEEEEEEeccccc-cccccccccccccccccCcchh
Confidence 99999875 35788 9998 5999999999997653442 258999864 65 333433222 111110000
Q ss_pred ---CCCCCCccEEEEEEeCC-CCCcccee-eecCCCccCCCCCCCccCCCCCCCCccEEEEecccC-----CCCCCCceE
Q 047920 404 ---QDVLPDARVGRFRIPFD-GSEFGELE-AALDPDEHGRGMDMCSINPAYLGKMYRYAYACGAKR-----PCNFPNTLT 473 (556)
Q Consensus 404 ---~~~~~~~~L~R~~idl~-~~~~~~~~-~~l~~~~~~~~~EfP~In~~~~G~~yry~Y~~~~~~-----~~~~~~~lv 473 (556)
......++|+||+||++ ++.+..++ +.+.. .++.++|||+||++|.||+|||+|+++... +...+|+|+
T Consensus 439 ~~~~~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~-~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~ 517 (610)
T PLN02969 439 NNAKGKELLPHLVQVSIDLDRTGDCRSCDVEPLSN-QWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVV 517 (610)
T ss_pred cccCcccccceEEEEEEeCCcCCccccccceeecc-ccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEE
Confidence 00123578999999996 34332111 22321 124689999999999999999999886542 234679999
Q ss_pred EEecCCCceEEEc-CCCCcCCccEEeeC---CCCCCCCCeEEEEEEEcC-CCceEEEEEecCCccc----cEEEEcCCCC
Q 047920 474 KLDLVGKKAKNWY-EEGAVPSEPFFVAR---PGATEEDDGVVISIVSER-NGEGFALLLDGSTFEE----IARAKFPYGL 544 (556)
Q Consensus 474 K~Dl~tg~~~~w~-~~~~~~~EPvFVPr---pg~~~EDDG~Lls~V~d~-~~~s~L~VLDA~~l~e----VAr~~LP~~v 544 (556)
|+|+++|+.+.|. +++++++||+|||| |++++|||||||++|+|. .++|+|+||||++|++ |||++||++|
T Consensus 518 K~D~~tg~~~~w~~g~~~~~~EPvFVPr~~~p~~~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v 597 (610)
T PLN02969 518 KLDVPDGSARSWSTGARRFVGEPVFVPRKSSQGGGEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHL 597 (610)
T ss_pred EEECCCCCEEEEEeCCCCcccCCEEecCCCCCCCCccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECCccc
Confidence 9999999999996 79999999999999 568899999999999996 5899999999999997 9999999998
Q ss_pred --CCCCCcccccC
Q 047920 545 --PYGLHGCWVPK 555 (556)
Q Consensus 545 --P~GfHG~w~~~ 555 (556)
|+||||+|++.
T Consensus 598 ~~P~GfHG~w~~~ 610 (610)
T PLN02969 598 TFPMGFHGFWADE 610 (610)
T ss_pred CCCccccccccCC
Confidence 99999999873
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.8e-67 Score=569.96 Aligned_cols=460 Identities=33% Similarity=0.533 Sum_probs=357.3
Q ss_pred ccEEEeecCCCCceEEEEeCCCCCCCCCCccccCccCCCcEEEEEEeCCeEEEEEEEecChHHHHHHHcCCccccccCCC
Q 047920 87 ELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAAKENKKLCYREFSEV 166 (556)
Q Consensus 87 ~l~V~G~IP~~L~Gtl~RnGPg~~~~g~~~~~H~FDGdGml~~~~f~~G~v~y~~RfV~T~~~~~e~~agr~~~~~f~~~ 166 (556)
.+.+.|.||+||+|+++|||||.|..|...++|||||.+++|+++|.||+++|++||++|+.|++.....+.+..+|++.
T Consensus 36 ~~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v~~~f~~~ 115 (582)
T KOG1285|consen 36 ECTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIVSGEFAPV 115 (582)
T ss_pred ccccccccCccccccccCCCCcccccCcccccccccchhhhhheeecCCeEEEEeeecccCCcccccccceeeecccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCCchhhhhhhhhhcc-cCCCCCCccceeeEEcCCceeeEeecCCCcceeeCCCCCceeeccccCC-CCCCcccCCCC
Q 047920 167 P-KPDNFLSYVGELASLF-SGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTISRFEYSD-TLGGLIHSAHP 243 (556)
Q Consensus 167 ~-~~~~~~~~~~~~~~~~-~~~~~~~~aNT~V~~~g~grLlAl~E~g~~p~~iDp~TLeT~g~~d~~~-~l~~~~~sAHP 243 (556)
+ .|+.+-+.|......+ .+...+|+||+++.+.|+++|+|.+|+. ..++||++||+|+..++|.+ .+.-..++|||
T Consensus 116 ~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet~-~~~ki~~~tl~t~~~~~~~k~~v~~~~~gah~ 194 (582)
T KOG1285|consen 116 AEFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTETP-HAVKIDPGTLETTYKVRFTKTLVQEHTAGAHP 194 (582)
T ss_pred CCCCCccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCCc-eeEEecCcccceeEeeccccceeeeeecccCC
Confidence 6 4444333322222333 2667899999999999668999999988 59999999999999999998 55556788999
Q ss_pred ccccC-Ccee-cccC-CC---CCcEEEEEEeCCCce-------eEEEEE--EecCCCCCCccccccccCCCEEEEEeccc
Q 047920 244 IVTES-EFLT-LLPD-LV---SPGYWVVRMEAGSNE-------RKVIGR--VNCRGGPAPGWVHSFPVTEHYVVVPEMSL 308 (556)
Q Consensus 244 ~~Dp~-e~~~-~~~~-~~---~~~y~v~~~~~~~~~-------~~~~~~--v~~~~~~~~~~iHdfavTenY~V~~~~Pl 308 (556)
+.|+. ++++ ++.. +. ...|.+.++.+.... ..+... +.+++.+.|.|||+|++||||+|++++|+
T Consensus 195 ~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~ 274 (582)
T KOG1285|consen 195 HPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPL 274 (582)
T ss_pred cccCcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCc
Confidence 99999 8888 4443 22 234666665433221 111112 45778899999999999999999999999
Q ss_pred ccCHHHHHhcC------CCCccceeeCCCCCcEEEEEeCCCCceeEEEEcCceeEEeeccccccCCCCCceeEEEEEeec
Q 047920 309 RYCAQNLLRAE------PTPLYKFEWHPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEEKDEDGRLIAIIADCCE 382 (556)
Q Consensus 309 ~~~~~~~l~g~------~~~~~~~~w~~~~~t~i~Vi~R~~g~~v~~~e~~~~f~fH~vNAyEd~d~~g~~~~Iv~D~~~ 382 (556)
++++.+++... .....+++|.|+...+++++++++++.+..-..+++++|||+||||++. .||+|.|+
T Consensus 275 ~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg------~vi~D~~~ 348 (582)
T KOG1285|consen 275 RLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDG------CVVPDLCV 348 (582)
T ss_pred ccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcceeccCcceEEEeeeecccC------ceEEEEEE
Confidence 99999887642 2345678999999999999999887655444445599999999999874 69999999
Q ss_pred cCCchh-hh-hh--hhhcccccC-CCCCCCCCccEEEEEEeCCCCCcc-------c------------------------
Q 047920 383 HNADTT-IL-DK--LRLNNLRSF-NGQDVLPDARVGRFRIPFDGSEFG-------E------------------------ 426 (556)
Q Consensus 383 ~~~~~~-~~-~~--~~l~~l~~~-~~~~~~~~~~L~R~~idl~~~~~~-------~------------------------ 426 (556)
|. +.. +. +. +..++++.. .+......+...|+++++..+... +
T Consensus 349 ~~-~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~~ 427 (582)
T KOG1285|consen 349 YF-DLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFRE 427 (582)
T ss_pred Ee-chhhhhcccceeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCceEEeecccCCccchhhcc
Confidence 98 443 11 11 111211110 011111223445666655432100 0
Q ss_pred --------e-eeecC-------CC-c-cCCCCCCCccCCCCCCCCccEEEEecccCCCCCCCceEEEecCCCceEEEcC-
Q 047920 427 --------L-EAALD-------PD-E-HGRGMDMCSINPAYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYE- 487 (556)
Q Consensus 427 --------~-~~~l~-------~~-~-~~~~~EfP~In~~~~G~~yry~Y~~~~~~~~~~~~~lvK~Dl~tg~~~~w~~- 487 (556)
+ +..+. +. . ...++|+++||..|.||+|||+|++..+. +..+++++|+|+.+|+.+.|..
T Consensus 428 ~de~~~~~l~e~r~~~~tg~~~~~~~~~~~nl~~~~in~~~~Gkk~ryvY~ai~~~-~p~~~g~vKvDl~~g~~~~w~~~ 506 (582)
T KOG1285|consen 428 SDELLGNRLEEIRLNLKTGLEFPRPVIPKINLDFGMINRSYLGKKYRYVYGAILDP-WPKVSGIVKVDLVTGEVKKWREG 506 (582)
T ss_pred cccchhceeeeeeecccccccccceeecccccccccccceeecccceEEEEEecCC-ccCCCeEEEEEecCCceeeEecC
Confidence 0 00000 00 1 12478999999999999999999998764 6678999999999999999974
Q ss_pred CCCcCCccEEeeCCCCCCCCCeEEEEEEEcCC-CceEEEEEecCCccccEEEEcCCCCCCCCCcccccC
Q 047920 488 EGAVPSEPFFVARPGATEEDDGVVISIVSERN-GEGFALLLDGSTFEEIARAKFPYGLPYGLHGCWVPK 555 (556)
Q Consensus 488 ~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~~-~~s~L~VLDA~~l~eVAr~~LP~~vP~GfHG~w~~~ 555 (556)
.+++.|||+|||+|++.+|||||||++|++.+ .+|+|+||||++|+++||+++|.+||+||||.|++.
T Consensus 507 ~~~~~GEP~FVP~p~~~eEDdG~Iv~~v~~~~~~~s~l~ildAK~l~~~ar~~vp~rvP~gfHG~f~~~ 575 (582)
T KOG1285|consen 507 GGRPGGEPIFVPRPGTLEEDDGYIVSVVHDESKEKSFLLILDAKTLEEVARVEVPTRVPYGFHGTFVST 575 (582)
T ss_pred CCccCCCceEecCCCCcccCCcEEEEEEEcCCCCcccEEEEeccccceeeEEecCCCCCCccceeEecc
Confidence 55666699999999999999999999999964 789999999999999999999999999999999975
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=2.2e-18 Score=188.84 Aligned_cols=279 Identities=19% Similarity=0.238 Sum_probs=203.0
Q ss_pred cccCCccccccccccc-cEEEeecCCCCceEEEEeCCCCCC--CCCCccccCccCCCcEEEEEEeCC--eEEEEEEEecC
Q 047920 72 NHVAWTSVRQERWEGE-LVVQGEIPLWLKGTYLRNGPGMWH--IGDYNFRHLFDGYATLVKLHIENG--RLIAGHRQIES 146 (556)
Q Consensus 72 ~~~~~~~~~~E~~~~~-l~V~G~IP~~L~Gtl~RnGPg~~~--~g~~~~~H~FDGdGml~~~~f~~G--~v~y~~RfV~T 146 (556)
...+|.|+. |..... +.++|.+|.-++|.+.|+||+.-. +|+ +|+|||++|+|.+.|+.| +++|..||.+|
T Consensus 108 v~~~f~~~~-~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g---~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~ 183 (582)
T KOG1285|consen 108 VSGEFAPVA-EFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGG---HHLYAGTETPHAVKIDPGTLETTYKVRFTKT 183 (582)
T ss_pred eeccccccC-CCCCccCcceeeeeeecccccccccCCCcceeecCC---CeeEecCCCceeEEecCcccceeEeeccccc
Confidence 455788887 654444 558999999999999999999754 433 599999999999999999 89999999999
Q ss_pred hHHHHHHHcCCcc-ccccCCCCCCCchhhhhhh----hh-hcccCCCCCCccceeeEEcCCceeeEeecCCCcce---ee
Q 047920 147 EAYKAAKENKKLC-YREFSEVPKPDNFLSYVGE----LA-SLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSI---II 217 (556)
Q Consensus 147 ~~~~~e~~agr~~-~~~f~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~aNT~V~~~g~grLlAl~E~g~~p~---~i 217 (556)
|.+++..|+.. +...|++-.- ....+++. .. .........+.+|+..++.. ++++|+.|... +| ..
T Consensus 184 --~v~~~~~gah~~~d~~G~~~g~-~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~-~~~~a~~~dd~-~~p~yvh 258 (582)
T KOG1285|consen 184 --LVQEHTAGAHPHPDEIGTVYGH-FGIARFGLFFARALTVLKNPANGVGLANAGLVWFH-NRLLAYSEDDL-PYPGYVH 258 (582)
T ss_pred --eeeeeecccCCcccCcccEEee-echhhccccccceeEEEecCCCccccccccceEee-cceeeeccCCC-ccceEEe
Confidence 99999888433 3334432110 00001110 00 11112334567899976664 79999888774 54 23
Q ss_pred CCCCCce-eeccccCCCCCCcccCCCCccccC--CceecccCCC-CCcEEEEEEeCCCceeEEEEEEecCCCCCCccccc
Q 047920 218 DPDTLDT-ISRFEYSDTLGGLIHSAHPIVTES--EFLTLLPDLV-SPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHS 293 (556)
Q Consensus 218 Dp~TLeT-~g~~d~~~~l~~~~~sAHP~~Dp~--e~~~~~~~~~-~~~y~v~~~~~~~~~~~~~~~v~~~~~~~~~~iHd 293 (556)
.-..+|| |+.+++...|. ....|||++||. +.+...++.. ++.+.+++++..+.+..- ..+.+ ..|.|+||
T Consensus 259 s~G~tenyi~~~e~~~~l~-~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~-~~~~~---~~~t~hh~ 333 (582)
T KOG1285|consen 259 SFGDTENYIGRFEFPLRLN-LSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVP-VEIFP---SFPTFHHD 333 (582)
T ss_pred ecCCccceEeEecCCcccc-hhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCc-ceecc---CcceEEEe
Confidence 3457899 99999999888 478999999988 6666777765 355556666544332111 12322 27899999
Q ss_pred cccCCCEEEEEecccccCHHHHHhcCCCCccceeeCCCCCcEEEEEeCC--CCceeEEEEcCceeEEeeccccccCC
Q 047920 294 FPVTEHYVVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKA--SGKIVASVEVPLYITFHFINAYEEKD 368 (556)
Q Consensus 294 favTenY~V~~~~Pl~~~~~~~l~g~~~~~~~~~w~~~~~t~i~Vi~R~--~g~~v~~~e~~~~f~fH~vNAyEd~d 368 (556)
||+|||+.|+++.+...++..+..+.. | ...+..+..|+.+.++. +...++|.+.+.+++||+.|+||+..
T Consensus 334 na~eedg~vi~D~~~~~~~~~~~~~~~-p---~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~ 406 (582)
T KOG1285|consen 334 NAFEEDGCVVPDLCVYFDLSEMIRDTS-P---LLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKP 406 (582)
T ss_pred eeecccCceEEEEEEEechhhhhcccc-e---eecccccccccccccccCCcccceEEEeccccccccchhhhcccC
Confidence 999999999999999999998777655 3 45678888999999885 34568999999999999999999743
No 8
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=66.56 E-value=1.8e+02 Score=30.90 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=120.0
Q ss_pred cceeeCCCCCceeeccccCCCCCCcccCCCCccccC--Cceeccc--CCCC---CcEEEEEEeCCCceeEEEEE--EecC
Q 047920 213 GSIIIDPDTLDTISRFEYSDTLGGLIHSAHPIVTES--EFLTLLP--DLVS---PGYWVVRMEAGSNERKVIGR--VNCR 283 (556)
Q Consensus 213 ~p~~iDp~TLeT~g~~d~~~~l~~~~~sAHP~~Dp~--e~~~~~~--~~~~---~~y~v~~~~~~~~~~~~~~~--v~~~ 283 (556)
..|.+|.++.+-+|..+- .+.+|..+.|+ +++.... .-+. -.-.|..++..+.. ..++ +|..
T Consensus 18 rv~viD~d~~k~lGmi~~-------g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~--~~~EI~iP~k 88 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDT-------GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS--PTGEIEIPPK 88 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-------ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE--EEEEEEETTS
T ss_pred eEEEEECCCCcEEEEeec-------ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc--ccceEecCCc
Confidence 468899999888888642 35556556666 4543221 1110 00122233444442 2233 3321
Q ss_pred -CCCCCccccccccC--CCEEEEEecccccCHHHHHhcCCCCccceeeCCCCCcEEEEEeCCCCceeEEEEcCceeEEee
Q 047920 284 -GGPAPGWVHSFPVT--EHYVVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGKIVASVEVPLYITFHF 360 (556)
Q Consensus 284 -~~~~~~~iHdfavT--enY~V~~~~Pl~~~~~~~l~g~~~~~~~~~w~~~~~t~i~Vi~R~~g~~v~~~e~~~~f~fH~ 360 (556)
..-.-.+-+.+++| ++|+.+. +-.--+-+.||+-..++.+..+.+|.|+...-
T Consensus 89 ~R~~~~~~~~~~~ls~dgk~~~V~------------------------N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP 144 (342)
T PF06433_consen 89 PRAQVVPYKNMFALSADGKFLYVQ------------------------NFTPATSVTVVDLAAKKVVGEIDTPGCWLIYP 144 (342)
T ss_dssp -B--BS--GGGEEE-TTSSEEEEE------------------------EESSSEEEEEEETTTTEEEEEEEGTSEEEEEE
T ss_pred chheecccccceEEccCCcEEEEE------------------------ccCCCCeEEEEECCCCceeeeecCCCEEEEEe
Confidence 00112466777776 2444432 22223567899998888899999999865432
Q ss_pred ccccccCCCCCceeEEEEEeeccCCchhhhhhhhhcccccCCCCCCCCCccEEEEEEeCCCCCccceeeecCCCccCCCC
Q 047920 361 INAYEEKDEDGRLIAIIADCCEHNADTTILDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGM 440 (556)
Q Consensus 361 vNAyEd~d~~g~~~~Iv~D~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~L~R~~idl~~~~~~~~~~~l~~~~~~~~~ 440 (556)
. .++ + .. =+| - ++.|..++||-++....+.+..++++ -
T Consensus 145 ~---~~~---~----F~-~lC-~-------------------------DGsl~~v~Ld~~Gk~~~~~t~~F~~~-----~ 182 (342)
T PF06433_consen 145 S---GNR---G----FS-MLC-G-------------------------DGSLLTVTLDADGKEAQKSTKVFDPD-----D 182 (342)
T ss_dssp E---ETT---E----EE-EEE-T-------------------------TSCEEEEEETSTSSEEEEEEEESSTT-----T
T ss_pred c---CCC---c----eE-EEe-c-------------------------CCceEEEEECCCCCEeEeeccccCCC-----C
Confidence 1 111 1 11 112 1 24566677775443332223344321 2
Q ss_pred CCCccCCCCCCCCccEEEEecccCCCCCCCceEEEecCCCce---EEEc-------CCCCcCC--ccEEeeCCCCCCCCC
Q 047920 441 DMCSINPAYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKA---KNWY-------EEGAVPS--EPFFVARPGATEEDD 508 (556)
Q Consensus 441 EfP~In~~~~G~~yry~Y~~~~~~~~~~~~~lvK~Dl~tg~~---~~w~-------~~~~~~~--EPvFVPrpg~~~EDD 508 (556)
|-.-.++.|.+...+|.|.. .. ..|.-+|+...+. ..|. ++++-|+ +++= -....
T Consensus 183 dp~f~~~~~~~~~~~~~F~S-y~------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A------~~~~~ 249 (342)
T PF06433_consen 183 DPLFEHPAYSRDGGRLYFVS-YE------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA------YHAAS 249 (342)
T ss_dssp S-B-S--EEETTTTEEEEEB-TT------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE------EETTT
T ss_pred cccccccceECCCCeEEEEe-cC------CEEEEEeccCCcccccCcccccCccccccCcCCcceeeee------ecccc
Confidence 43334666777777887743 22 2344455555442 2342 0223222 1121 12244
Q ss_pred eEEEEEEEcC------CCceEEEEEecCCccccEEEEcCCC
Q 047920 509 GVVISIVSER------NGEGFALLLDGSTFEEIARAKFPYG 543 (556)
Q Consensus 509 G~Lls~V~d~------~~~s~L~VLDA~~l~eVAr~~LP~~ 543 (556)
|-|.++.+.. +..+|+||+|.++=..|+|+.|++.
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~ 290 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP 290 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc
Confidence 6666555542 2458999999999888999999754
No 9
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.69 E-value=6.9 Score=38.65 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=29.3
Q ss_pred eeEEcCCceeeEe-ecCCCcceeeCCCCCceeeccccCCC
Q 047920 195 GVVKLGDGRVVCL-TETQKGSIIIDPDTLDTISRFEYSDT 233 (556)
Q Consensus 195 ~V~~~g~grLlAl-~E~g~~p~~iDp~TLeT~g~~d~~~~ 233 (556)
++..+| +++++| |-.+ -.+.+|++|||++|.+.|.++
T Consensus 95 Git~~g-d~~y~LTw~eg-vaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 95 GITKLG-DYFYQLTWKEG-VAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred ceeecc-ceEEEEEeccc-eeEEEChHHhhhhcccccCCc
Confidence 356777 688887 4445 489999999999999999774
No 10
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=46.31 E-value=77 Score=33.94 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=44.7
Q ss_pred CCCccEEEEecccCCCCCCCceEEEecCCCceEEEcCCCCcCCccEEeeCCCCCCCCCeEEEEEEEcCCCceEEEEEecC
Q 047920 451 GKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGS 530 (556)
Q Consensus 451 G~~yry~Y~~~~~~~~~~~~~lvK~Dl~tg~~~~w~~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~~~~s~L~VLDA~ 530 (556)
...-||.|.++.+ ..|.++|+.+++...-..-| .+|.=|.= ..|.-||++..+.. ..+.|+|++
T Consensus 45 s~Dgr~~yv~~rd------g~vsviD~~~~~~v~~i~~G---~~~~~i~~----s~DG~~~~v~n~~~---~~v~v~D~~ 108 (369)
T PF02239_consen 45 SPDGRYLYVANRD------GTVSVIDLATGKVVATIKVG---GNPRGIAV----SPDGKYVYVANYEP---GTVSVIDAE 108 (369)
T ss_dssp TT-SSEEEEEETT------SEEEEEETTSSSEEEEEE-S---SEEEEEEE------TTTEEEEEEEET---TEEEEEETT
T ss_pred cCCCCEEEEEcCC------CeEEEEECCcccEEEEEecC---CCcceEEE----cCCCCEEEEEecCC---CceeEeccc
Confidence 3446899988633 48999999999854432222 23332221 23555777665533 589999999
Q ss_pred CccccEEEEcC
Q 047920 531 TFEEIARAKFP 541 (556)
Q Consensus 531 ~l~eVAr~~LP 541 (556)
+++.|.++...
T Consensus 109 tle~v~~I~~~ 119 (369)
T PF02239_consen 109 TLEPVKTIPTG 119 (369)
T ss_dssp T--EEEEEE--
T ss_pred cccceeecccc
Confidence 99998877654
No 11
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=36.30 E-value=67 Score=34.41 Aligned_cols=86 Identities=21% Similarity=0.203 Sum_probs=44.0
Q ss_pred CCCccCCCCCCCCccEEEEecccCCCCCCCceEEEecCCCceEEEc--CCCCcCCccEEeeCCCCCCCCCeEEEEEEEcC
Q 047920 441 DMCSINPAYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWY--EEGAVPSEPFFVARPGATEEDDGVVISIVSER 518 (556)
Q Consensus 441 EfP~In~~~~G~~yry~Y~~~~~~~~~~~~~lvK~Dl~tg~~~~w~--~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~ 518 (556)
-|-+.+|+ -+|+|......+. .+.|.-+|.++.+...-. .++.-+-.+-|= .+++ .|..-+++.
T Consensus 272 lFi~thP~-----s~~vwvd~~~~~~--~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~------~dG~-~v~vS~~~~ 337 (369)
T PF02239_consen 272 LFIKTHPD-----SRYVWVDTFLNPD--ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN------PDGK-EVWVSVWDG 337 (369)
T ss_dssp --EE--TT------SEEEEE-TT-SS--HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-------TTSS-EEEEEEE--
T ss_pred ceeecCCC-----CccEEeeccCCCC--CceEEEEECcCcceeEEEeccCCCcEeccEEC------CCCC-EEEEEEecC
Confidence 45455554 3688987332222 479999999998654321 222111122222 2233 344444444
Q ss_pred CCceEEEEEecCCccccEEEEcCC
Q 047920 519 NGEGFALLLDGSTFEEIARAKFPY 542 (556)
Q Consensus 519 ~~~s~L~VLDA~~l~eVAr~~LP~ 542 (556)
++ .|+|+|++++++++|+.++.
T Consensus 338 ~~--~i~v~D~~Tl~~~~~i~~~t 359 (369)
T PF02239_consen 338 NG--AIVVYDAKTLKEKKRIPVPT 359 (369)
T ss_dssp TT--EEEEEETTTTEEEEEEE--S
T ss_pred CC--EEEEEECCCcEEEEEEEeeC
Confidence 33 99999999999999999653
No 12
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=27.85 E-value=1.5e+02 Score=20.16 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=20.7
Q ss_pred ceEEEEEecCCccccEEEEcCCCCCCCC
Q 047920 521 EGFALLLDGSTFEEIARAKFPYGLPYGL 548 (556)
Q Consensus 521 ~s~L~VLDA~~l~eVAr~~LP~~vP~Gf 548 (556)
...+.|+|+.+...+.++.+. .-|.++
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg-~~P~~i 39 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVG-GYPFGV 39 (42)
T ss_pred CCEEEEEECCCCeEEEEEECC-CCCceE
Confidence 458888999998889998884 555543
No 13
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=25.35 E-value=62 Score=22.48 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=17.6
Q ss_pred cceeeEEcCCceeeEeecCCCcceeeCCCC
Q 047920 192 ANTGVVKLGDGRVVCLTETQKGSIIIDPDT 221 (556)
Q Consensus 192 aNT~V~~~g~grLlAl~E~g~~p~~iDp~T 221 (556)
.+.++... +|+||+.++.+ .-|.||++|
T Consensus 13 ~~~~~~v~-~g~vyv~~~dg-~l~ald~~t 40 (40)
T PF13570_consen 13 IWSSPAVA-GGRVYVGTGDG-NLYALDAAT 40 (40)
T ss_dssp --S--EEC-TSEEEEE-TTS-EEEEEETT-
T ss_pred cCcCCEEE-CCEEEEEcCCC-EEEEEeCCC
Confidence 34455555 48999999887 589999876
No 14
>CHL00108 psbJ photosystem II protein J
Probab=22.07 E-value=28 Score=24.88 Aligned_cols=12 Identities=67% Similarity=1.295 Sum_probs=10.3
Q ss_pred EeecCCCCceEE
Q 047920 91 QGEIPLWLKGTY 102 (556)
Q Consensus 91 ~G~IP~~L~Gtl 102 (556)
+|+||.||-||.
T Consensus 5 tGRiPLWlVgtv 16 (40)
T CHL00108 5 TGRIPLWLIGTV 16 (40)
T ss_pred cccccEEeeeeh
Confidence 599999998875
No 15
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=20.16 E-value=6.2e+02 Score=24.46 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=40.6
Q ss_pred CceEEEecCCCceEEEcCCCCcCCccEEeeCCCCCCCCCeEEEEEEEcCCCceEEEEEecCCccccEEEEcCCCCCCC
Q 047920 470 NTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGLPYG 547 (556)
Q Consensus 470 ~~lvK~Dl~tg~~~~w~~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~~~~s~L~VLDA~~l~eVAr~~LP~~vP~G 547 (556)
+.|..+|+++++.......+..+....|-|. ..+|++.. .....|.|+|.++.+.+.++++. .=|++
T Consensus 229 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-------g~~l~~~~---~~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 295 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPD-------EKYLLTTN---GVSNDVSVIDVAALKVIKSIKVG-RLPWG 295 (300)
T ss_pred CeEEEEECCCCcEEEEEEeCCCcceEEECCC-------CCEEEEEc---CCCCeEEEEECCCCcEEEEEEcc-cccce
Confidence 5788899998886544222222333344432 22443322 12457999999999989999885 33444
Done!